Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 260 of 313
Found at i:79724335 original size:23 final size:22
Alignment explanation
Indices: 79724012--79724335 Score: 80
Period size: 23 Copynumber: 14.2 Consensus size: 22
79724002 AAAGTGCCGC
* *
79724012 AAATCGAAGTGTTTAAATGCTGT
1 AAATTGAAGTGTTT-AATTCTGT
*
79724035 AAATTGAAGTGTTAAAGTGT-TG-
1 AAATTGAAGTGTTTAA-T-TCTGT
* * **
79724057 CAATTGAAGTATTTAAATGATGT
1 AAATTGAAGTGTTT-AATTCTGT
* * * *
79724080 GAATTGAAGTGTTAAAGTGCTGC
1 AAATTGAAGTGTTTAA-TTCTGT
**
79724103 AAATTGAAGCATTTAAATGT-TGT
1 AAATTGAAGTGTTT-AAT-TCTGT
* *
79724126 AAATTGAAGTGTTTTAAGTACTGC
1 AAATTGAAGTG-TTTAA-TTCTGT
* *
79724150 AAATTGAATTGTTTAGTTGCTAG-
1 AAATTGAAGTGTTTAATT-CT-GT
79724173 AAATTG-AGATGTTT-A-TCGTTGT
1 AAATTGAAG-TGTTTAATTC--TGT
* *
79724195 -AATTGAGGTGTATAAATGT-TGT
1 AAATTGAAGTGT-TTAAT-TCTGT
* * *
79724217 TAATTG-GGATGTTAAAGTGT-TGT
1 AAATTGAAG-TGTTTAA-T-TCTGT
* *
79724240 AAGTTGAGGTGTTTAAATGT-TGT
1 AAATTGAAGTGTTT-AAT-TCTGT
79724263 AAATTGAAGTGTTTAATTGCTGT
1 AAATTGAAGTGTTTAATT-CTGT
* **
79724286 AAATTGAGGTGCTCAAATGT-TGT
1 AAATTGAAGTG-TTTAAT-TCTGT
*
79724309 AAATTGAAGTGTTTAAGTTCTGC
1 AAATTGAAGTGTTTAA-TTCTGT
79724332 AAAT
1 AAAT
79724336 AATATATAAT
Statistics
Matches: 227, Mismatches: 41, Indels: 66
0.68 0.12 0.20
Matches are distributed among these distances:
20 1 0.00
21 11 0.05
22 39 0.17
23 147 0.65
24 27 0.12
25 2 0.01
ACGTcount: A:0.32, C:0.05, G:0.24, T:0.39
Consensus pattern (22 bp):
AAATTGAAGTGTTTAATTCTGT
Found at i:79724776 original size:4 final size:5
Alignment explanation
Indices: 79724753--79724787 Score: 56
Period size: 5 Copynumber: 7.4 Consensus size: 5
79724743 ATAAAACACA
79724753 TTCTT TTCTT TTCTT TTC-T TTCTT TT-TT TTCTT TT
1 TTCTT TTCTT TTCTT TTCTT TTCTT TTCTT TTCTT TT
79724788 TTGAATTGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 8 0.29
5 20 0.71
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (5 bp):
TTCTT
Found at i:79724788 original size:10 final size:9
Alignment explanation
Indices: 79724753--79724789 Score: 56
Period size: 9 Copynumber: 4.0 Consensus size: 9
79724743 ATAAAACACA
79724753 TTCTTTTCTT
1 TTCTTTT-TT
*
79724763 TTCTTTTCT
1 TTCTTTTTT
79724772 TTCTTTTTT
1 TTCTTTTTT
79724781 TTCTTTTTT
1 TTCTTTTTT
79724790 GAATTGAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
9 18 0.72
10 7 0.28
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (9 bp):
TTCTTTTTT
Found at i:79728395 original size:58 final size:57
Alignment explanation
Indices: 79728263--79728397 Score: 182
Period size: 58 Copynumber: 2.3 Consensus size: 57
79728253 TTTAATTCAT
* **
79728263 ATAATAATTATATTAAGAATTTTATTAAATTATATATTATTTTATTAAATTATATTTA
1 ATAATAATTATATTAA-AATATGGTTAAATTATATATTATTTTATTAAATTATATTTA
* * *
79728321 ATAATAATTATGTTAAAATATGGTTAAATTATTTATTATTTTTATTAAATTATTTTTA
1 ATAATAATTATATTAAAATATGGTTAAATTATATATTA-TTTTATTAAATTATATTTA
79728379 ATAATAATCT-TATTAAAAT
1 ATAATAAT-TATATTAAAAT
79728398 TTAATAACAA
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
57 18 0.26
58 49 0.72
59 1 0.01
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.53
Consensus pattern (57 bp):
ATAATAATTATATTAAAATATGGTTAAATTATATATTATTTTATTAAATTATATTTA
Found at i:79729627 original size:21 final size:21
Alignment explanation
Indices: 79729583--79729634 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
79729573 TTGAGAATGC
**
79729583 TATTAAATTATATATTATTTT
1 TATTAAATTATATATTATAAT
79729604 TATTAAATTATAT-TTAATAAT
1 TATTAAATTATATATT-ATAAT
*
79729625 TATTATATTA
1 TATTAAATTA
79729635 AAATATGATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
20 2 0.07
21 25 0.93
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (21 bp):
TATTAAATTATATATTATAAT
Found at i:79729663 original size:59 final size:56
Alignment explanation
Indices: 79729532--79729681 Score: 153
Period size: 59 Copynumber: 2.6 Consensus size: 56
79729522 AATATTATAT
* *
79729532 ATTATAT-TTTTTTTATT-AATTCATATTTTAATAATATTATATTGAGAATGCTATTAA
1 ATTATATATTTTTTTATTAAATT-ATA-TTTAATAATATTATATTAAAAATGC-ATTAA
79729589 ATTATATATTATTTTTATTAAATTATATTTAATAATTATTATATTAAAATATG-ATTAA
1 ATTATATATT-TTTTTATTAAATTATATTTAATAA-TATTATATTAAAA-ATGCATTAA
* * * *
79729647 ATTTTTTTTATTTTTTTATTAAATCATATTCAATA
1 A--TTATATATTTTTTTATTAAATTATATTTAATA
79729682 GTAATCCTAT
Statistics
Matches: 80, Mismatches: 6, Indels: 12
0.82 0.06 0.12
Matches are distributed among these distances:
57 7 0.09
58 16 0.20
59 43 0.54
60 14 0.17
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.56
Consensus pattern (56 bp):
ATTATATATTTTTTTATTAAATTATATTTAATAATATTATATTAAAAATGCATTAA
Found at i:79730283 original size:10 final size:10
Alignment explanation
Indices: 79730268--79730301 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
79730258 TCCAAATCCT
79730268 TTTTTATTCA
1 TTTTTATTCA
*
79730278 TTTTTATTTA
1 TTTTTATTCA
79730288 -TTTTATTCA
1 TTTTTATTCA
79730297 TTTTT
1 TTTTT
79730302 TATTTTGTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
9 8 0.38
10 13 0.62
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76
Consensus pattern (10 bp):
TTTTTATTCA
Found at i:79730291 original size:19 final size:20
Alignment explanation
Indices: 79730269--79730306 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
79730259 CCAAATCCTT
79730269 TTTTATTCA-TTTTTATTTA
1 TTTTATTCATTTTTTATTTA
79730288 TTTTATTCATTTTTTATTT
1 TTTTATTCATTTTTTATTT
79730307 TGTTTTGTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.18, C:0.05, G:0.00, T:0.76
Consensus pattern (20 bp):
TTTTATTCATTTTTTATTTA
Found at i:79730921 original size:3 final size:3
Alignment explanation
Indices: 79730913--79730943 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
79730903 ATTTTCTTAA
79730913 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
79730944 CCCTCATTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:79731053 original size:23 final size:22
Alignment explanation
Indices: 79731010--79731053 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
79731000 CATGTGCATG
*
79731010 CGTACATTTTTTTTATATTATA
1 CGTACATTTTTTTAATATTATA
79731032 CGTACATATTTTTGTAAT-TTAT
1 CGTACAT-TTTTT-TAATATTAT
79731054 TTTTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 7 0.37
23 9 0.47
24 3 0.16
ACGTcount: A:0.27, C:0.09, G:0.07, T:0.57
Consensus pattern (22 bp):
CGTACATTTTTTTAATATTATA
Found at i:79737178 original size:25 final size:25
Alignment explanation
Indices: 79737150--79737199 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
79737140 ATTAACAATT
*
79737150 CTCTTTTACTAAATTTTCAAGTAAA
1 CTCTTTTACTAAATTTTAAAGTAAA
79737175 CTCTTTTACTAAATTTTAAAGTAAA
1 CTCTTTTACTAAATTTTAAAGTAAA
79737200 TAAATAAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.38, C:0.14, G:0.04, T:0.44
Consensus pattern (25 bp):
CTCTTTTACTAAATTTTAAAGTAAA
Found at i:79737349 original size:21 final size:21
Alignment explanation
Indices: 79737325--79737367 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
79737315 AATAATAACT
79737325 AATAACTAATAATAAATAATA
1 AATAACTAATAATAAATAATA
* * * *
79737346 AATATCTTATACTAATTAATA
1 AATAACTAATAATAAATAATA
79737367 A
1 A
79737368 GCAAATTAAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (21 bp):
AATAACTAATAATAAATAATA
Found at i:79737499 original size:25 final size:23
Alignment explanation
Indices: 79737455--79737515 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 23
79737445 ATTTTGATTT
*
79737455 ATTTAATAATATAATATCATTATA
1 ATTTAATTATATAATATCA-TATA
79737479 ATTTAATTATCATAA-ATTCATATA
1 ATTTAATTAT-ATAATA-TCATATA
*
79737503 ATATAAATTATAT
1 AT-TTAATTATAT
79737516 TTAATAAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
24 18 0.56
25 14 0.44
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (23 bp):
ATTTAATTATATAATATCATATA
Found at i:79737680 original size:30 final size:27
Alignment explanation
Indices: 79737644--79737708 Score: 76
Period size: 30 Copynumber: 2.3 Consensus size: 27
79737634 TTTCCTATAA
*
79737644 TATAATATCTTAACTTTAATTAATATAATT
1 TATAATATCTTAA--TTAAATAATAT-ATT
* *
79737674 TATAATATTTTAATTAAATAATATTTT
1 TATAATATCTTAATTAAATAATATATT
79737701 TATAATAT
1 TATAATAT
79737709 AAATCAAGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
27 10 0.31
28 10 0.31
30 12 0.38
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (27 bp):
TATAATATCTTAATTAAATAATATATT
Found at i:79737710 original size:16 final size:17
Alignment explanation
Indices: 79737674--79737710 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
79737664 TAATATAATT
79737674 TATAATATTTTAATTAA
1 TATAATATTTTAATTAA
*
79737691 -ATAATATTTTTA-TAA
1 TATAATATTTTAATTAA
79737706 TATAA
1 TATAA
79737711 ATCAAGAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 3 0.17
16 15 0.83
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TATAATATTTTAATTAA
Found at i:79738080 original size:44 final size:43
Alignment explanation
Indices: 79738014--79738357 Score: 211
Period size: 44 Copynumber: 7.8 Consensus size: 43
79738004 GCCATTAGTC
79738014 CTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG-AGATT
* * * * * *
79738058 CTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGAGATT
* * * * * * *
79738101 CTTATCTTCCC-ACCA-CAGTGGAGAAGTAGATTTAAGCCATT-AG-TC
1 C-TATC-ACCCTA--AGCAGTAGTGGAGTAGGTTGAAG--ATTGAGATT
* *
79738146 CTACCACCCTAAGTAGTAGTGGAGTAGGTTGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG-AGATT
** * * * *
79738190 CTGCCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGA-ATC
1 CTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGAT--TGAGATT
* * * * * * * *
79738234 CTATCTTCCC-AATACAGTGGAGAAGTAGCTTTAAGCCATT-AG-TC
1 CTATC-ACCCTAA-GCAGTAGTGGAGTAGGTTGAAG--ATTGAGATT
79738278 CTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG-AGATT
*
79738322 CTGTCACCCTAAGCAGTAGTGGAGT-GGATTGAAGAT
1 CTATCACCCTAAGCAGTAGTGGAGTAGG-TTGAAGAT
79738358 GGTGACTTAT
Statistics
Matches: 225, Mismatches: 52, Indels: 46
0.70 0.16 0.14
Matches are distributed among these distances:
41 6 0.03
42 1 0.00
43 48 0.21
44 123 0.55
45 39 0.17
46 4 0.02
47 4 0.02
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (43 bp):
CTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGAGATT
Found at i:79739633 original size:132 final size:132
Alignment explanation
Indices: 79737989--79739621 Score: 2153
Period size: 132 Copynumber: 12.4 Consensus size: 132
79737979 CAACACGGTT
79737989 GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
1 GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
* **
79738054 GATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGATTCTTATCTTCCCACCACAG
66 GATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAG
79738119 TG
131 TG
* * *
79738121 GAGAAGTAGATTTAAGCCATTAGTCCTACCACCCTAAGTAGTAGTGGAGTAGGTTGAAGATTGCA
1 GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
* *
79738186 GATTCTGCCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCCTATCTTCCCAATACAG
66 GATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAG
79738251 TG
131 TG
* *
79738253 GAGAAGTAGCTTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
1 GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
** * * * * *
79738318 GATTCTGTCACCCTAAGCAGTAGTGGAGTGGATTGAAGATGGTGACT-TATATCTTCTCAAGATA
66 GATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCT-TATCTTCCCAATACA
*
79738382 ATG
130 GTG
* * * *
79738385 AAGAAGCAGATTTAAGCCATTAGCCCAATCTCCCTAAGCAG-ATGTGGAGTAGGTTGAAGATTGC
1 GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTA-GTGGAGTAGGTTGAAGATTGC
* * * * *
79738449 AGATTCTGTCACCCTAAGCAGTAGTGGAGCGGATCAAAGATGGTGAATCATATCTTCTC-ATGAT
65 AGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAT-AC
79738513 AGTG
129 AGTG
* * * * *
79738517 GAGAAGCAGATTTAAGCCATTAGCCCAATCTCCATAAGCAGTAGTGGAGTAGGTTGAAGATTACA
1 GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
* * * * *
79738582 GATTCTGTCACCCTAAGCAGTAGTGGAGCGGATCAAAGATGGTGAATCATATCTTCTC-ATGATA
66 GATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAT-ACA
79738646 GTG
130 GTG
* * * * *
79738649 GAGAAGCAGATTTAAGCCATTAGCCCAATCTCCATAAGCAGTAGTGGAGTAGGTTGAAGATTACA
1 GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
* ** * * * *
79738714 GATTCTGTCACCCTAAGCAGTAGTGAAGTGGACCAAAGATAGTGAATCTTATCTTCCCAAAACAG
66 GATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAG
79738779 TG
131 TG
* * * * *
79738781 GAGAAGAAGGTTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAATATTACA
1 GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
* * * * * * *
79738846 GATTCTGTCACCCTAAACAGTAGTGGGGCAGATCGAATATGATAAATCTTACCTTCCCAATATAG
66 GATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAG
79738911 TG
131 TG
* * * *
79738913 GAGAAGCAGATTGAAGCCATTAGTCCGATCACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGTA
1 GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
* * * * *
79738978 GATTCTGTCAACCAAAGTAGTAGTGGAGCAGATCGAAGATCGTGAATCTTATCTTCCCAATACAA
66 GATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAG
79739043 TG
131 TG
* * ** * **
79739045 GAGAAGCAGATTTAAACCATTAGTCCTACCACCCTAAGCAGTAGTCAATTAGGTTGAAGATTTTA
1 GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
* *
79739110 GATTCTGTCACTCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCAATACAG
66 GATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAG
79739175 TG
131 TG
* * * * *
79739177 GAGAAGTACATTTAAGCCAATAGTTCTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGCA
1 GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
79739242 GATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATGC-TCCCAATACA
66 GATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT-CTTCCCAATACA
*
79739306 ATG
130 GTG
* * * *
79739309 GAGAAGTATATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAATGGAGTAGGATGAAGATTGCA
1 GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
* * * * * * *
79739374 GATTCTGTCACCCTAAGCAGCAGCGGAGCAGATCGAATATGATGAATCCTACCTTCCCAATATAG
66 GATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAG
79739439 TG
131 TG
* * ** * * * *
79739441 GAGAAACAGATTTAAGCAACCAGTCGTATCACCCTAAACAGTAGTGGAATAGGTTGAAGATT-TA
1 GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
* * * * * * *
79739505 TGATTCTTTCACCCGAAGCAATAGTGGAGCAAATCGAAGATGGTGAATCCTATGTTCCCAATATA
66 -GATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACA
79739570 GTG
130 GTG
* *
79739573 GAGAAGCAGATTTAAGCCATTAGTCCTACCACCCTAAGAAGTAGTGGAG
1 GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAG
79739622 CAGATCGAAG
Statistics
Matches: 1330, Mismatches: 162, Indels: 18
0.88 0.11 0.01
Matches are distributed among these distances:
131 4 0.00
132 1323 0.99
133 3 0.00
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (132 bp):
GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
GATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAG
TG
Found at i:79739673 original size:220 final size:220
Alignment explanation
Indices: 79739382--79739841 Score: 562
Period size: 220 Copynumber: 2.1 Consensus size: 220
79739372 CAGATTCTGT
* * * *
79739382 CACCCTAAGCAGCAGCGGAGCAGATCGAATATGATGAATCCTACCTTCCCAATATAGTGGAGAAA
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAATCCTACCTTCCCAATACAGTGGAGAAA
* * *
79739447 CAGATTTAAGCAACCAGTCGTATCACCCTAAACAGTAGTGGAATAGGTTGAAGATTTA-TGATTC
66 CAGATTTAAGCAACCAGCCCTATCACCCTAAACAGTAGTGGAATAGGTTGAAGA-TTACCGATTC
* * * * * *
79739511 TTTCACCCGAAGCAATAGTGGAGCAAATCGAAGATGGTGAATCCTATGTTCCCAATATAGTGGAG
130 TGTCACCCGAAGCAATAGTGGAGCAAATAGAAGATGATGAATCCTATCTTCCCAACACAGTGGAG
79739576 AAGCAGATTTAAGCCATTAGTCCTAC
195 AAGCAGATTTAAGCCATTAGTCCTAC
* * * * *
79739602 CACCCTAAGAAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAATCCTACCTTCCCAATACAGTGGAGAAA
* ** * * * *
79739667 CAGATTTAAGCCATTAGCCCTATCACTCTAAGCAGTAGTGGAGTTGGTTGAAGATTACCGATTCT
66 CAGATTTAAGCAACCAGCCCTATCACCCTAAACAGTAGTGGAATAGGTTGAAGATTACCGATTCT
* * * * * * ** * * *
79739732 GTCACCCTAGGCAGTAGTGGATCAGATAGAAGTTGATGAATTTTATCTTCGCAACACGGTTGAGA
131 GTCACCCGAAGCAATAGTGGAGCAAATAGAAGATGATGAATCCTATCTTCCCAACACAGTGGAGA
* *
79739797 AGTAGATTTAAGCCATTAGTCCTAT
196 AGCAGATTTAAGCCATTAGTCCTAC
79739822 CACCCTAAGCAGTAGTGGAG
1 CACCCTAAGCAGTAGTGGAG
79739842 TAGGTTGAAG
Statistics
Matches: 200, Mismatches: 39, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
219 3 0.01
220 197 0.99
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (220 bp):
CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAATCCTACCTTCCCAATACAGTGGAGAAA
CAGATTTAAGCAACCAGCCCTATCACCCTAAACAGTAGTGGAATAGGTTGAAGATTACCGATTCT
GTCACCCGAAGCAATAGTGGAGCAAATAGAAGATGATGAATCCTATCTTCCCAACACAGTGGAGA
AGCAGATTTAAGCCATTAGTCCTAC
Found at i:79739721 original size:88 final size:88
Alignment explanation
Indices: 79739526--79739709 Score: 296
Period size: 88 Copynumber: 2.1 Consensus size: 88
79739516 CCCGAAGCAA
* * *
79739526 TAGTGGAGCAAATCGAAGATGGTGAATCCTATGTTCCCAATATAGTGGAGAAGCAGATTTAAGCC
1 TAGTGGAGCAGATCGAAGATGGTGAATCCTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCC
*
79739591 ATTAGTCCTACCACCCTAAGAAG
66 ATTAGCCCTACCACCCTAAGAAG
*
79739614 TAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCC
1 TAGTGGAGCAGATCGAAGATGGTGAATCCTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCC
* * *
79739679 ATTAGCCCTATCACTCTAAGCAG
66 ATTAGCCCTACCACCCTAAGAAG
79739702 TAGTGGAG
1 TAGTGGAG
79739710 TTGGTTGAAG
Statistics
Matches: 88, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
88 88 1.00
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.24
Consensus pattern (88 bp):
TAGTGGAGCAGATCGAAGATGGTGAATCCTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCC
ATTAGCCCTACCACCCTAAGAAG
Found at i:79739721 original size:352 final size:352
Alignment explanation
Indices: 79739250--79740324 Score: 1007
Period size: 352 Copynumber: 3.1 Consensus size: 352
79739240 CAGATTCTGT
79739250 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATGCTCCCAATACAATGGAGAAG
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATGCTCCCAATACAATGGAGAAG
* * * *
79739315 TATATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAATGGAGTAGGATGAAGATTGCAGATTCT
66 CAGATTTAAGCCATTAGCCCTATCACCCTAAGCAGTAATGGAGTAGGATGAAGATTACAGATTCT
* * *
79739380 GTCACCCTAAGCAGCAGCGGAGCAGATCGAA-TATGATGAATCCTACCTTCCCAATATAGTGGAG
131 GTCACCCTAAGCAGCAGCGGAGCAGATAGAAGT-TGATGAATCCTACCTTCCCAACACAGTGGAG
* *
79739444 AAACAGATTTAAGCAACCAGTCGTATCACCCTAAACAGTAGTGGAATAGGTTGAAGATT-TATGA
195 AAACAGATTTAAGCAACCAGTCCTATCACCCTAAACAGTAGTGGAATAGGTTGAAGATTGCA-GA
* * *
79739508 TTCTTTCACCCGAAGCAATAGTGGAGCAAATCGAAGATGGTGAATCCTATGTTCCCAATATAGTG
259 TTCTGTCACCCGAAGCAATAGTGGAGCAAATCGAAGATGGTGAATCCTATCTTCCCAATACAGTG
79739573 GAGAAGCAGATTTAAGCCATTAGTCCTAC
324 GAGAAGCAGATTTAAGCCATTAGTCCTAC
* *
79739602 CACCCTAAGAAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT-CTTCCCAATACAGTGGAGAA
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATGC-TCCCAATACAATGGAGAA
* * * * *
79739666 GCAGATTTAAGCCATTAGCCCTATCACTCTAAGCAGTAGTGGAGTTGGTTGAAGATTACCGATTC
65 GCAGATTTAAGCCATTAGCCCTATCACCCTAAGCAGTAATGGAGTAGGATGAAGATTACAGATTC
* * * * ** * * * *
79739731 TGTCACCCTAGGCAGTAGTGGATCAGATAGAAGTTGATGAATTTTATCTTCGCAACACGGTTGAG
130 TGTCACCCTAAGCAGCAGCGGAGCAGATAGAAGTTGATGAATCCTACCTTCCCAACACAGTGGAG
** * ** * *
79739796 AAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGAT
195 AAACAGATTTAAGCAACCAGTCCTATCACCCTAAACAGTAGTGGAATAGGTTGAAGATTGCAGAT
* * * *
79739861 TCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGG
260 TCTGTCACCCGAAGCAATAGTGGAGCAAATCGAAGATGGTGAATCCTATCTTCCCAATACAGTGG
* *
79739926 AGAAGTAGATTTAAGCCATTAGTCCTAT
325 AGAAGCAGATTTAAGCCATTAGTCCTAC
* * * * * * * * * *
79739954 CGCCGTAAGCAGTAGTGGAGTA-AGTTGAAGATTGTAGATTC-TGT-CACCCTAA-GCAGTAGTG
1 CACCCTAAGCAGTAGTGGAGCAGA-TCGAAGATGGT-GAATCTTATGCTCCC-AATACAAT-G-G
* ** * * ** *** * * *
79740015 -GAA-CAAATCGAA--TATGATGAATCT-T-A-CCTTCCCAATACAGTGGAGAAGCAGATTTAAG
61 AGAAGCAGATTTAAGCCATTA-G-CCCTATCACCCTAAGCAGTA-A-TGGAGTAG--GA-TGAAG
* ** * ** * * * * * *
79740073 CCATT--AG-TCCTACCACCCTAAGAAATAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCC
119 --ATTACAGATTCTGTCACCCTAAGCAGCAGCGGAGCAGATAGAAGTTGATGAATCCTACCTTCC
* ** * ** * *
79740135 CAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTT
182 CAACACAGTGGAGAAACAGATTTAAGCAACCAGTCCTATCACCCTAAACAGTAGTGGAATAGGTT
* * ** ** *
79740200 GAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAATAGTTCGAAGATGGTGAATCTTATCTT
247 GAAGATTGCAGATTCTGTCACCCGAAGCAATAGTGGAGCAAATCGAAGATGGTGAATCCTATCTT
* * *
79740265 TCCAATACAGTGGAGAAGCATATTTAAG-CATTAGTCCTAT
312 CCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTAC
*
79740305 CACCTTAAGCAGTAGTGGAG
1 CACCCTAAGCAGTAGTGGAG
79740325 TCGGTTGAAG
Statistics
Matches: 613, Mismatches: 93, Indels: 35
0.83 0.13 0.05
Matches are distributed among these distances:
348 6 0.01
349 4 0.01
350 8 0.01
351 47 0.08
352 533 0.87
353 12 0.02
355 3 0.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (352 bp):
CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATGCTCCCAATACAATGGAGAAG
CAGATTTAAGCCATTAGCCCTATCACCCTAAGCAGTAATGGAGTAGGATGAAGATTACAGATTCT
GTCACCCTAAGCAGCAGCGGAGCAGATAGAAGTTGATGAATCCTACCTTCCCAACACAGTGGAGA
AACAGATTTAAGCAACCAGTCCTATCACCCTAAACAGTAGTGGAATAGGTTGAAGATTGCAGATT
CTGTCACCCGAAGCAATAGTGGAGCAAATCGAAGATGGTGAATCCTATCTTCCCAATACAGTGGA
GAAGCAGATTTAAGCCATTAGTCCTAC
Found at i:79739808 original size:484 final size:482
Alignment explanation
Indices: 79739122--79740564 Score: 2149
Period size: 484 Copynumber: 3.0 Consensus size: 482
79739112 TTCTGTCACT
* * *
79739122 CTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGTACA
1 CTAAGAAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGTAGA
* * *
79739187 TTTAAGCCAATAGTTCTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGCAGATTCTGTCA
66 TTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCA
* * *
79739252 CCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATGCTCCCAATACAATGGAGAAGTA
131 CCCTAAGCAGTAGTGGATCAGATCGAAGATGGTGAATCTTAT-CTTCCAATACAGTGGAGAAGTA
* *
79739317 TATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAATGGAGTAGGATGAAGATTGCAGATTCTGT
195 TATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGT
* * * * * * *
79739382 CACCCTAAGCAGCAGCGGAGCAGATCGAATATGATGAATCCTACCTTCCCAATATAGTGGAGAAA
260 CACCCTAAGCAGTAG-GGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
* ** * *
79739447 CAGATTTAAGCAACCAGTCGTATCACCCTAAACAGTAGTGGAATAGGTTGAAGATT-TATGATTC
324 CAGATTTAAGCCATTAGTCGTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTA-GATTC
* * * * *
79739511 TTTCACCCGAAGCAATAGTGGAGCAAATCGAAGATGGTGAATCCTATGTTCCCAATATAGTGGAG
388 TTTCACCCTAAGCAGTAGTGGAGCAAATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAG
79739576 AAGCAGATTTAAGCCATTAGTCCTACCACC
453 AAGCAGATTTAAGCCATTAGTCCTACCACC
*
79739606 CTAAGAAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGA
1 CTAAGAAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGTAGA
* * * * *
79739671 TTTAAGCCATTAGCCCTATCACTCTAAGCAGTAGTGGAGTTGGTTGAAGATTACCGATTCTGTCA
66 TTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCA
* * * * * * * *
79739736 CCCTAGGCAGTAGTGGATCAGATAGAAGTTGATGAATTTTATCTTCGCAACACGGTTGAGAAGTA
131 CCCTAAGCAGTAGTGGATCAGATCGAAGATGGTGAATCTTATCTTC-CAATACAGTGGAGAAGTA
*
79739801 GATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGT
195 TATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGT
79739866 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
260 CACCCTAAGCAGTAG-GGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
* * * * *
79739931 TAGATTTAAGCCATTAGTCCTATCGCCGTAAGCAGTAGTGGAGTAAGTTGAAGATTGTAGATTCT
324 CAGATTTAAGCCATTAGTCGTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATTCT
* * * * *
79739996 GTCACCCTAAGCAGTAGTGGAACAAATCGAATATGATGAATCTTACCTTCCCAATACAGTGGAGA
389 TTCACCCTAAGCAGTAGTGGAGCAAATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGA
79740061 AGCAGATTTAAGCCATTAGTCCTACCACC
454 AGCAGATTTAAGCCATTAGTCCTACCACC
*
79740090 CTAAGAAATAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGTAGA
1 CTAAGAAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGTAGA
79740155 TTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCA
66 TTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCA
* *
79740220 CCCTAAGCAGTAGTGGAAT-AGTTCGAAGATGGTGAATCTTATCTTTCCAATACAGTGGAGAAGC
131 CCCTAAGCAGTAGTGG-ATCAGATCGAAGATGGTGAATCTTATC-TTCCAATACAGTGGAGAAGT
* *
79740284 ATATTTAAG-CATTAGTCCTATCACCTTAAGCAGTAGTGGAGTCGGTTGAAGATTGCAGATTCTG
194 ATATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTG
*
79740348 TCACCCTAAGCAGTAGTGATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
259 TCACCCTAAGCAGTAGGGA-GCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * * * *
79740413 GCAGATTTAAGCCATTAGT-GCTATCACCTTAAGCAGTCGCGGAGTAGGTTAAAGATTGCAGATT
323 GCAGATTTAAGCCATTAGTCG-TATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATT
*
79740477 -TTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGG
387 CTT-TCACCCTAAGCAGTAGTGGAGCAAATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGG
* * *
79740541 GGAACCAGATTTAAGCTATTAGTC
451 AGAAGCAGATTTAAGCCATTAGTC
79740565 AAATCCCCCT
Statistics
Matches: 859, Mismatches: 93, Indels: 15
0.89 0.10 0.02
Matches are distributed among these distances:
482 3 0.00
483 248 0.29
484 601 0.70
485 7 0.01
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (482 bp):
CTAAGAAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGTAGA
TTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCA
CCCTAAGCAGTAGTGGATCAGATCGAAGATGGTGAATCTTATCTTCCAATACAGTGGAGAAGTAT
ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTC
ACCCTAAGCAGTAGGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCA
GATTTAAGCCATTAGTCGTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATTCTTT
CACCCTAAGCAGTAGTGGAGCAAATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
CAGATTTAAGCCATTAGTCCTACCACC
Found at i:79739871 original size:44 final size:43
Alignment explanation
Indices: 79739818--79744411 Score: 343
Period size: 44 Copynumber: 104.6 Consensus size: 43
79739808 GCCATTAGTC
*
79739818 CTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTG-AGATT
* * * * * *
79739862 CTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGAGATT
* * * * * * *
79739905 CTTATCTTCCC-AATACAGTGGAGAAGTAGATTTAAGCCATT-AG-TC
1 C-TATC-ACCCTAA-GCAGTAGTGGAGTAGATTGAAG--ATTGAGATT
* *
79739950 CTATCGCCGTAAGCAGTAGTGGAGTA-AGTTGAAGATTGTAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGA-TTGAAGATTG-AGATT
* ** * * * *
79739994 CTGTCACCCTAAGCAGTAGTGGAACAAATCGAATA-TGATGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGA-GATT
* * * * * * * * *
79740037 CTTACCTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCATT-AG-TC
1 C-TATC-ACCCTAA-GCAGTAGTGGAGTAGATTGAAG--ATTGAGATT
* * * * * * * *
79740082 CTACCACCCTAAGAAATAGTGGAGCAGATCGAAGATGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGAGATT
* * * * * * *
79740125 CTTATCTTCCC-AATACAGTGGAGAAGTAGATTTAAGCCATT-AG-TC
1 C-TATC-ACCCTAA-GCAGTAGTGGAGTAGATTGAAG--ATTGAGATT
*
79740170 CTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTG-AGATT
* * * * *
79740214 CTGTCACCCTAAGCAGTAGTGGAATAG-TTCGAAGATGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATT-GAAGATTGAGATT
** * * * * * * * *
79740257 CTTATCTTTCC-AATACAGTGGAGAAGCATATTTAAGCATT-AG-TC
1 C-TATC-ACCCTAA-GCAGTAGTGGAGTAGATTGAAG-ATTGAGATT
* * *
79740301 CTATCACCTTAAGCAGTAGTGGAGTCGGTTGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTG-AGATT
* * * * * *
79740345 CTGTCACCCTAAGCAGTAGT-GATGCAGATCGAAGATGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGA-GTAGATTGAAGATTGAGATT
* * * * * * * *
79740388 CTTATCTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCATT-AG-TG
1 C-TATC-ACCCTAA-GCAGTAGTGGAGTAGATTGAAG--ATTGAGATT
* * * * *
79740433 CTATCACCTTAAGCAGTCGCGGAGTAGGTTAAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTG-AGATT
* * * * * * *
79740477 TTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGAGATT
* * * ** *
79740520 CTTATCTTCCC-AATACAGT-GGGGAACCAGATTTAAGCTATT-AG--T
1 C-TATC-ACCCTAA-GCAGTAGTGG-AGTAGATTGAAG--ATTGAGATT
* * * * * *
79740564 CAAATCCCCCTAAGCAGTAGTGTAGTCGGTCGAAGATTGTAGATT
1 C-TATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTG-AGATT
* ** * * * * *
79740609 -TTTCACCCTAATAAGTAGTGGAGCAGATCGAAGATGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGAGATT
** * * *
79740651 CTTATC-TTCTCAAG-AG-AGTGTAGAAGCAGATTTAAGCCATT-AG-TC
1 C-TATCACCCT-AAGCAGTAGTG--G-AGTAGATTGAAG--ATTGAGATT
* * * * *
79740696 CTACCACCCTAAGTAGTGGTGGACTAGGTTGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTG-AGATT
* * * * * * *
79740740 CTGTCACCCTAGGCAGTAGTGGAGCAGATCGAAGATAGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGAGATT
* * * * * *
79740783 CTCATCTTCCCAATAA--AGTGGAGAAGTAGATTTAAGCCATT-AG-TC
1 CT-ATC-ACCC--TAAGCAGTAGTGGAGTAGATTGAAG--ATTGAGATT
* *
79740828 CTATCACCCTAAGTAGTAGTGGAGTAGGTTGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTG-AGATT
* * * * * *
79740872 CTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGAGATT
* * * * * * *
79740915 CTTATCTTCCC-AATACAGTGGAGAAGTAGATTTAAGCCATT-AG-TC
1 C-TATC-ACCCTAA-GCAGTAGTGGAGTAGATTGAAG--ATTGAGATT
*
79740960 CTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTG-AGATT
* * * *
79741004 CTGTCACCCTAAGCAGTAGTGGA-TCAGATCGAATA-TGATGAAT
1 CTATCACCCTAAGCAGTAGTGGAGT-AGATTGAAGATTGA-GATT
* * * * * * *
79741047 CTTTC-CTTCCCAA-TA-TAGTGGAGAAGCAGATTTAAGCCA-TCAG-TC
1 CTATCAC--CCTAAGCAGTAGT-G-G-AGTAGATTGAAG--ATTGAGATT
*
79741092 CTATCACCCTAAGCAGTAGTGGAGTA-AGTTGAAGATTTATGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGA-TTGAAGATTGA-GATT
* * * * * * *
79741136 CTTTTACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGAGATT
** * * * * * * *
79741179 CTTATGTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCATT-AG-TC
1 C-TAT-CACCCTAA-GCAGTAGTGGAGTAGATTGAAG--ATTGAGATT
* * * *
79741224 CAACCACCCTAAGCAATAGTCGAGTA-AGTTGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGA-TTGAAGATTG-AGATT
* * * ** * * *
79741268 CTGTCACCGTAAGCAGTATTGGAGTAGATCCAAGATGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGAGATT
** * * * * ** * *
79741311 CTTATTTTCCC-AATACAGTGGAGAAACAGATTTAAGCTATT-AG-TC
1 C-TA-TCACCCTAA-GCAGTAGTGGAGTAGATTGAAG--ATTGAGATT
*
79741356 CTATCACCCTAAGCAGTAGTGGAGTCGATTGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTG-AGATT
* * * * * *
79741400 CTGTCACCCTAAGCAGTAGT-GATGCAGATCGAAGATGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGA-GTAGATTGAAGATTGAGATT
* * * * *
79741443 CTTATCTTCCC-AA-CA-CAGTGGAGAAGCATATTTAAGCTATT-AG-TC
1 C-TATC-ACCCTAAGCAGTAGTGGAGTAG---ATTGAAG--ATTGAGATT
* *
79741488 CTATCACCCTAAGCAGTAGCGGAGTAGGTTGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTG-AGATT
* * * * * *
79741532 CTGTCACCCTAAGCAGTAGT-GATGCAGATCGAAGATGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGA-GTAGATTGAAGATTGAGATT
* * * * * * *
79741575 CTTATCTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCATT-AG--T
1 C-TATC-ACCCTAA-GCAGTAGTGGAGTAGATTGAAG--ATTGAGATT
* * * * *
79741619 CAATCACCCTAAGCAGTAGTGGTGTCGGTTGAAGATTACAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATT-GAGATT
* * * * ** ** *
79741663 TTGTCACCCTAAGAAGTAGTGGAGCAGAACGAAGACGGTGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGAGATT
** * * * * * * * * *
79741706 CTTATCTTCCAAATACAGTGGAGAAGTGGATTTAAGCCATT-CG-TC
1 C-TATCACCCTAA-GCAGTAGTGGAGTAGATTGAAG--ATTGAGATT
* * * * *
79741751 CTACCACCCTAAGGAGTAGTCGAGTAGGTTGAAGATATCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGAT-TGAGATT
** ** * * *
79741795 CTGCCACTGTAAGCAGTAGTGGAGCAGATCGAAGATGGTGA-ATC
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGAT--TGAGATT
* * ** * * * * *
79741839 CTATCTTCCCAAAATAGTGGAGAAGTAGATTTAAGCCATT-AG-TC
1 CTATC-ACCCTAAGCAGTAGTGGAGTAGATTGAAG--ATTGAGATT
*
79741883 CTATCACCCTAAGCAGTAGTGGAGTAGGA-TGAAGATTTCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTA-GATTGAAGA-TTGAGATT
** * * * * * * *
79741927 CTGCCACCCTGAGCAGTAGTGGAGCAGATCGAATATGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGAGATT
** * * * * * * * ** *
79741970 CTCATCTTCCAAATACAATGGAGAAGAAGATTTCAGCCATT-AG-TC
1 CT-ATCACCCTAA-GCAGTAGTGGAGTAGATTGAAG--ATTGAGATT
* *
79742015 CTATCACCCTAAGTAGTAGTGGAGTCAG-TTGAAGATTACAGATT
1 CTATCACCCTAAGCAGTAGTGGAGT-AGATTGAAGATT-GAGATT
* * * * * *
79742059 CTGTCACCCTAAGCAGTAGTCGAGCAGATCGAAGATGGTGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGAGATT
* * * * * * * *
79742102 CTTATCTTCCC-AACACAGTGGAGAAGCAGATTTAAGCCA-TCAG--T
1 C-TATC-ACCCTAA-GCAGTAGTGGAGTAGATTGAAG--ATTGAGATT
* * * *
79742146 CTTATCAGCCTAAGCAGTAGTGGAGTGGGTTGAAGATTGGAGATA
1 C-TATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATT-GAGATT
* ** ** * * *
79742191 CTGTCATTCTAAGCAGTAGTGGAGCGGATTGAAGATGGCGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGAGATT
* * * * **
79742234 C-ATAACTTCTCAAG-A-TAATGAAGTCGCAGATTGAAGCCATT-AG-CC
1 CTATCAC-CCT-AAGCAGTAGTGGAGT---AGATTGAAG--ATTGAGATT
* * * *
79742279 CAATCTCCCTAAGTAGTAGTGGAGTAGGTTGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTG-AGATT
* ** * * * *
79742323 CTGTCACCCTAAGCAGTAGTGGAGCGGATAGAAGATGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGAGATT
** * * **
79742366 CATATC-TTCTCAAG-A-TAGTGGAGAAGCAGATTTAAGCCATT-AG-CC
1 C-TATCACCCT-AAGCAGTAGT-G-G-AGTAGATTGAAG--ATTGAGATT
* * * *
79742411 CAATCTCCATAAGCAGTAGTGGAGTACG-TTGAAGATTGCAGACT
1 CTATCACCCTAAGCAGTAGTGGAGTA-GATTGAAGATTG-AGATT
* * * * * *
79742455 CTATCACCTTAAGCAGTAGTGGAGTGGATCGAAGATAGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGAGATT
** * * *
79742498 CTTATCTTCCTAA-TA-TAGTGGAGTAGAAGATTTAAGCCATT-AG-TC
1 C-TATCACCCTAAGCAGTAGTGGAGT---AGATTGAAG--ATTGAGATT
* * * * * * *
79742543 CTGTCTCCCTAAGAAGCAGTGGAGTGGGTTGAAGATT-ACAATTT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGA-GA-TT
* ** * * * *
79742587 CTGTCACCCTAAGCAGTAGTGGAGTAGACCGAAAATAGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGAGATT
* * * * * * *
79742630 CTTATCTTCCCAAAACAGTAGAGGAGAAGATTTAAGCCATT-AG-TC
1 C-TATC-ACCCTAAGCAGTAGTGGAGTAGATTGAAG--ATTGAGATT
* * * *
79742675 CTATCTCCCTAAGCAGTAGTGGAGTAGGTTAAAGATTATAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATT-GAGATT
* * * * * * *
79742719 CTGTCACCCTAAACAGTAGTGGGGCAGATCGAAGAAAAT-A-AAT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAG--ATTGAGATT
* * * *
79742762 CTTACCTTCCC-AA-TA-TAGTGGAGAAGCAGATTGAAGCCATT-AG--T
1 C-TATC-ACCCTAAGCAGTAGT-G-G-AGTAGATTGAAG--ATTGAGATT
* * *
79742806 CAGATCACCCTAAGCAGTAGTGGAGCAGGTTGAAGATTGCAGATT
1 C-TATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTG-AGATT
* * * * * * * * *
79742851 CTGTCAACCTAAGTAGTAGTGGAGCAGATCGAATATGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGAGATT
** * * * * * * * * * *
79742894 CTTATCTTCCGAATACAATGGAGAAGCAGATTTAAACCATT-AG-TC
1 C-TATCACCCTAA-GCAGTAGTGGAGTAGA-TTGAA-GATTGAGATT
* * * *
79742939 CTACCACCCTAAGCAGTAGTCGAGTAGGTTAAAGATTGTAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTG-AGATT
* * ** * * *
79742983 CTGTCACCCTAAGCAGTAGTGGAGCAGAACGAAGATGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGAGATT
** * * * * * * *
79743026 CTTATCTTCCTAATACAGTGGAGAAGCAGATTTAAGCCATT-AG-TC
1 C-TATCACCCTAA-GCAGTAGTGGAGTAGATTGAAG--ATTGAGATT
* * *
79743071 CTATCACCCTAAGTAGTAGTGGAGTTGGTTGAAGATTGTAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTG-AGATT
** * * * * *
79743115 CCGTCACCCTAAGCAGTAGTGGAGTCGATCGAAGATGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGAGATT
* * * * *
79743158 CTTATCTTCCC--AGCA-CAGTTGAGAAGCAGATTTAAGCCATT-AG-TC
1 C-TATC-ACCCTAAGCAGTAG-TG-G-AGTAGATTGAAG--ATTGAGATT
* * *
79743203 CTATCACCCTAAGCAGTGGTGGAGTAGGTTGAAGATTTTAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGA-TTGAGATT
* * * * *
79743247 CTGTCACCCTAAGCAGTAGGGGAGTAGGTTGAAGATTTATGATA
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGA-GATT
* * * ** *
79743291 CTTTCACCCTAAGCAGTAGTGGAGCAAATCAAAGATGGTGA-ATC
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGAT--TGAGATT
** * * * * ** * *
79743335 CTATGTTCCC-AA-TA-CAGTGAAGAAGCAGTTGTGGAGCT-AG-TC
1 CTAT-CACCCTAAGCAGTAGTGGAGTAG-A-TTGAAGA-TTGAGATT
* * * * * *
79743377 CGATCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGAGATT
* * * * * * *
79743420 CTTATCTTCCC-AATACAGTGGAGAAGTAGATTTAAGGCATT-AG-TC
1 C-TATC-ACCCTAA-GCAGTAGTGGAGTAGATTGAA-G-ATTGAGATT
* * * * *
79743465 CTATCACCCTAAGCTGTAGTAGAGTTGGTTGAAGATTGCCGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTG-AGATT
* * * * * *
79743509 CTGTCACCCTAGGTAGTAGTGGA-TCAGATAGAAG-TTGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGT-AGATTGAAGATT-GAGATT
* * * * * * *
79743552 CTTATCTTCCC-AA-CACGGTTGAGAAGCAGATTTAAGCCATT-AG-TC
1 C-TATC-ACCCTAAGCA--GTAGTGGAGTAGATTGAAG--ATTGAGATT
* *
79743597 CTATGACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTG-AGATT
* * * * * * * *
79743641 CTGTTA-CCTAAGAAGTAGTGGAGCAGATCGAAGATGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGAGATT
** * * * * * *
79743683 CTTATCTTCCTAATACAGTGGAGAAGTAGATTTAAGCCATT-AG-TC
1 C-TATCACCCTAA-GCAGTAGTGGAGTAGATTGAAG--ATTGAGATT
* *
79743728 CTATGACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTG-AGATT
* * * * * * *
79743772 CTGTCAGCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGAGATT
* * ** * * * * * *
79743815 CTTATCTTCCCAAAATAGTGGAGAAGCAGATTTAAGCCATT-AG-TC
1 C-TATC-ACCCTAAGCAGTAGTGGAGTAGATTGAAG--ATTGAGATT
* * * ** * * * * *
79743860 CAATCACCCTAGGAAGTAGTGGAACAGGTCGAAGATGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGAGATT
** ** * * *
79743903 CTTATCTTCAAAAG-AG-AGTGCAGAAGCAGATTTAAGCAATT-AG-TC
1 C-TATCACCCTAAGCAGTAGTG--G-AGTAGATTGAAG--ATTGAGATT
* * * * *
79743948 CTACCACCCTAAGGAGTGGTGGAGTAGGTTGAAGATTGCAAATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTG-AGATT
* * * * * * *
79743992 CTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATAGCGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGAGATT
** * * * * * *
79744035 CTTATCTTCCTAATACAGTGGAGAAGTAGATTTAAGCCATT-AG-TC
1 C-TATCACCCTAA-GCAGTAGTGGAGTAGATTGAAG--ATTGAGATT
* *
79744080 CTATCACCCAAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTG-AGATT
* * * * * *
79744124 CTGTCAACCTAAGTAGTAGTGGAGCT-GATCGAAGATGGAGAAT
1 CTATCACCCTAAGCAGTAGTGGAG-TAGATTGAAGATTGAGATT
* * * * * * * * * *
79744167 CTTATCTTCCC-AATACAATGGAGAAGCAGATTTAA-ATCATTAG-TC
1 C-TATC-ACCCTAA-GCAGTAGTGGAGTAGATTGAAGAT--TGAGATT
* * *
79744212 CTACCACCCTAAGCAGTAGTCGAGTAGGTTGAAGATTGTAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTG-AGATT
* * * * *
79744256 CTGTCACCCTAAGCAGTAGTGGAGCAGATCGAATA-TGATGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGA-GATT
* * * * * * * * * *
79744299 CTTACCTTCCC-AATACAGTTGAGAAGCAGATTTAAGCGA-TCAG-TC
1 C-TATC-ACCCTAA-GCAGTAGTGGAGTAGATTGAA--GATTGAGATT
* * *
79744344 CTATCACGCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCTGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTG-AGATT
* *
79744388 CTTTCACCCTAACCAGTAGTGGAG
1 CTATCACCCTAAGCAGTAGTGGAG
79744412 CAAATCGAAG
Statistics
Matches: 3035, Mismatches: 1138, Indels: 754
0.62 0.23 0.15
Matches are distributed among these distances:
40 3 0.00
41 91 0.03
42 129 0.04
43 747 0.25
44 1350 0.44
45 558 0.18
46 92 0.03
47 62 0.02
48 3 0.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (43 bp):
CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGAGATT
Found at i:79740116 original size:132 final size:132
Alignment explanation
Indices: 79739602--79740117 Score: 719
Period size: 132 Copynumber: 3.9 Consensus size: 132
79739592 TTAGTCCTAC
* *
79739602 CACCCTAAGAAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCCAATACAGTGGAGAAG
* * * * * *
79739667 CAGATTTAAGCCATTAGCCCTATCACTCTAAGCAGTAGTGGAGTTGGTTGAAGATTACCGATTCT
66 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGCAGATTCT
79739732 GT
131 GT
* * * * * * * * *
79739734 CACCCTAGGCAGTAGTGGATCAGATAGAAGTTGATGAATTTTATCTTCGCAACACGGTTGAGAAG
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCCAATACAGTGGAGAAG
* *
79739799 TAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
66 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGCAGATTCT
79739864 GT
131 GT
*
79739866 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCCAATACAGTGGAGAAG
* * * *
79739931 TAGATTTAAGCCATTAGTCCTATCGCCGTAAGCAGTAGTGGAGTA-AGTTGAAGATTGTAGATTC
66 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGA-TTGAAGATTGCAGATTC
79739995 TGT
130 TGT
* * * *
79739998 CACCCTAAGCAGTAGTGGAACAAATCGAATATGATGAATCTTACCTTCCCAATACAGTGGAGAAG
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCCAATACAGTGGAGAAG
* * * * *
79740063 CAGATTTAAGCCATTAGTCCTACCACCCTAAGAAATAGTGGAGCAGATCGAAGAT
66 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGAT
79740118 GGTGAATCTT
Statistics
Matches: 338, Mismatches: 44, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
132 337 1.00
133 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (132 bp):
CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCCAATACAGTGGAGAAG
CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGCAGATTCT
GT
Found at i:79740124 original size:220 final size:219
Alignment explanation
Indices: 79739866--79740324 Score: 765
Period size: 220 Copynumber: 2.1 Consensus size: 219
79739856 CAGATTCTGT
79739866 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
* * *
79739931 TAGATTTAAGCCATTAGTCCTATCGCCGTAAGCAGTAGTGGAGTAAGTTGAAGATTGTAGATTCT
66 TAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAAGTTGAAGATTGCAGATTCT
*
79739996 GTCACCCTAAGCAGTAGTGGAACAAATCGAATATGATGAATCTTACCTTCCCAATACAGTGGAGA
131 GTCACCCTAAGCAGTAGTGGAACAAATCGAAGATGATGAATCTTACCTTCCCAATACAGTGGAGA
79740061 AGCAGATTTAAGCCATTAGTCCTAC
196 AGCAGATTTAAG-CATTAGTCCTAC
* *
79740086 CACCCTAAGAAATAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
*
79740151 TAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
66 TAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAAGTTGAAGATTGCAGATTCT
* ** * * *
79740216 GTCACCCTAAGCAGTAGTGGAATAGTTCGAAGATGGTGAATCTTATCTTTCCAATACAGTGGAGA
131 GTCACCCTAAGCAGTAGTGGAACAAATCGAAGATGATGAATCTTACCTTCCCAATACAGTGGAGA
* *
79740281 AGCATATTTAAGCATTAGTCCTAT
196 AGCAGATTTAAGCATTAGTCCTAC
*
79740305 CACCTTAAGCAGTAGTGGAG
1 CACCCTAAGCAGTAGTGGAG
79740325 TCGGTTGAAG
Statistics
Matches: 221, Mismatches: 18, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
219 28 0.13
220 193 0.87
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (219 bp):
CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
TAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAAGTTGAAGATTGCAGATTCT
GTCACCCTAAGCAGTAGTGGAACAAATCGAAGATGATGAATCTTACCTTCCCAATACAGTGGAGA
AGCAGATTTAAGCATTAGTCCTAC
Found at i:79743305 original size:176 final size:174
Alignment explanation
Indices: 79743074--79743400 Score: 421
Period size: 176 Copynumber: 1.9 Consensus size: 174
79743064 ATTAGTCCTA
* * * *
79743074 TCACCCTAAGTAGTAGTGGAGTTGGTTGAAGATTGTAGATTCCGTCACCCTAAGCAGTAGTGGAG
1 TCACCCTAAGCAGTAGGGGAGTAGGTTGAAGATTGTAGATACCGTCACCCTAAGCAGTAGTGGAG
* * * *
79743139 TC-GATCGAAGATGGTGAATCTTATCTTCCCAGCACAGTTG-AGAAGCAGATT-T-AAGCCATTA
66 -CAAATCAAAGATGGTGAATCCTATCTTCCCAACACAG-TGAAGAAGCAG-TTGTGAAG-C--TA
* *
79743200 GTCCTATCACCCTAAGCAGTGGTGGAGTAGGTTGAAGATTTTAGATTCTG
125 GTCCGATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTTTAGATTCTG
**
79743250 TCACCCTAAGCAGTAGGGGAGTAGGTTGAAGATT-TATGATACTTTCACCCTAAGCAGTAGTGGA
1 TCACCCTAAGCAGTAGGGGAGTAGGTTGAAGATTGTA-GATACCGTCACCCTAAGCAGTAGTGGA
* * *
79743314 GCAAATCAAAGATGGTGAATCCTATGTTCCCAATACAGTGAAGAAGCAGTTGTGGAGCTAGTCCG
65 GCAAATCAAAGATGGTGAATCCTATCTTCCCAACACAGTGAAGAAGCAGTTGTGAAGCTAGTCCG
79743379 ATCACCCTAAGCAGTAGTGGAG
130 ATCACCCTAAGCAGTAGTGGAG
79743401 CAGATCGAAG
Statistics
Matches: 131, Mismatches: 15, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
174 27 0.21
175 7 0.05
176 95 0.73
177 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (174 bp):
TCACCCTAAGCAGTAGGGGAGTAGGTTGAAGATTGTAGATACCGTCACCCTAAGCAGTAGTGGAG
CAAATCAAAGATGGTGAATCCTATCTTCCCAACACAGTGAAGAAGCAGTTGTGAAGCTAGTCCGA
TCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTTTAGATTCTG
Found at i:79743895 original size:132 final size:132
Alignment explanation
Indices: 79740086--79743882 Score: 4910
Period size: 132 Copynumber: 28.8 Consensus size: 132
79740076 TTAGTCCTAC
* *
79740086 CACCCTAAGAAATAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
*
79740151 TAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
66 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
79740216 GT
131 GT
** * *
79740218 CACCCTAAGCAGTAGTGGAATAGTTCGAAGATGGTGAATCTTATCTTTCCAATACAGTGGAGAAG
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
* * *
79740283 CATATTTAAG-CATTAGTCCTATCACCTTAAGCAGTAGTGGAGTCGGTTGAAGATTGCAGATTCT
66 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
79740347 GT
131 GT
79740349 CACCCTAAGCAGTAGT-GATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
1 CACCCTAAGCAGTAGTGGA-GCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * * * * *
79740413 GCAGATTTAAGCCATTAGTGCTATCACCTTAAGCAGTCGCGGAGTAGGTTAAAGATTGCAGATTT
65 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
79740478 TGT
130 TGT
* *
79740481 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGGGAAC
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
* ** * * * * *
79740546 CAGATTTAAGCTATTAGTCAAATCCCCCTAAGCAGTAGTGTAGTCGGTCGAAGATTGTAGATT-T
66 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
*
79740610 TT
131 GT
** * * * *
79740612 CACCCTAATAAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCTCAAGAGAGTGTAGAAG
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
* * * *
79740677 CAGATTTAAGCCATTAGTCCTACCACCCTAAGTAGTGGTGGACTAGGTTGAAGATTGCAGATTCT
66 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
79740742 GT
131 GT
* * * *
79740744 CACCCTAGGCAGTAGTGGAGCAGATCGAAGATAGTGAATCTCATCTTCCCAATAAAGTGGAGAAG
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
* *
79740809 TAGATTTAAGCCATTAGTCCTATCACCCTAAGTAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
66 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
79740874 GT
131 GT
79740876 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
*
79740941 TAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
66 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
79741006 GT
131 GT
* * * *
79741008 CACCCTAAGCAGTAGTGGATCAGATCGAATATGATGAATCTT-TCCTTCCCAATATAGTGGAGAA
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT-CTTCCCAATACAGTGGAGAA
* * *
79741072 GCAGATTTAAGCCATCAGTCCTATCACCCTAAGCAGTAGTGGAGTAAGTTGAAGATT-TATGATT
65 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA-GATT
*
79741136 CTTT
129 CTGT
* *
79741140 TACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATGTTCCCAATACAGTGGAGAAG
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
* * * * *
79741205 CAGATTTAAGCCATTAGTCCAACCACCCTAAGCAATAGTCGAGTAAGTTGAAGATTGCAGATTCT
66 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
79741270 GT
131 GT
* * * * * *
79741272 CACCGTAAGCAGTATTGGAGTAGATCCAAGATGGTGAATCTTATTTTCCCAATACAGTGGAGAAA
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
* * *
79741337 CAGATTTAAGCTATTAGTCCTATCACCCTAAGCAGTAGTGGAGTCGATTGAAGATTGCAGATTCT
66 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
79741402 GT
131 GT
*
79741404 CACCCTAAGCAGTAGT-GATGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACAGTGGAGAA
1 CACCCTAAGCAGTAGTGGA-GCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * *
79741468 GCATATTTAAGCTATTAGTCCTATCACCCTAAGCAGTAGCGGAGTAGGTTGAAGATTGCAGATTC
65 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
79741533 TGT
130 TGT
79741536 CACCCTAAGCAGTAGT-GATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
1 CACCCTAAGCAGTAGTGGA-GCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * * * *
79741600 GCAGATTTAAGCCATTAGT-CAATCACCCTAAGCAGTAGTGGTGTCGGTTGAAGATTACAGATTT
65 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
79741664 TGT
130 TGT
* * * * *
79741667 CACCCTAAGAAGTAGTGGAGCAGAACGAAGACGGTGATTCTTATCTTCCAAATACAGTGGAGAAG
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
** * * * *
79741732 TGGATTTAAGCCATTCGTCCTACCACCCTAAGGAGTAGTCGAGTAGGTTGAAGATAT-CAGATTC
66 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGAT-TGCAGATTC
*
79741796 TGC
130 TGT
** * * *
79741799 CACTGTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCCTATCTTCCCAAAATAGTGGAGAAG
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
* * *
79741864 TAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGATGAAGATTTCAGATTCT
66 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
*
79741929 GC
131 GT
* * * * *
79741931 CACCCTGAGCAGTAGTGGAGCAGATCGAATATGGTGAATCTCATCTTCCAAATACAATGGAGAAG
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
* * * *
79741996 AAGATTTCAGCCATTAGTCCTATCACCCTAAGTAGTAGTGGAGTCA-GTTGAAGATTACAGATTC
66 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT-AGGTTGAAGATTGCAGATTC
79742060 TGT
130 TGT
* * *
79742063 CACCCTAAGCAGTAGTCGAGCAGATCGAAGATGGTGATTCTTATCTTCCCAACACAGTGGAGAAG
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
* * * * * *
79742128 CAGATTTAAGCCATCAGTCTTATCAGCCTAAGCAGTAGTGGAGTGGGTTGAAGATTGGAGATACT
66 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
79742193 GT
131 GT
** * * * * * * * * * * **
79742195 CATTCTAAGCAGTAGTGGAGCGGATTGAAGATGGCGAATCATAACTTCTCAAGATAATGAAGTCG
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
* * * * *
79742260 CAGATTGAAGCCATTAGCCCAATCTCCCTAAGTAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
66 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
79742325 GT
131 GT
* * * * * *
79742327 CACCCTAAGCAGTAGTGGAGCGGATAGAAGATGGTGAATCATATCTTCTCAAGATAGTGGAGAAG
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
* * * * * *
79742392 CAGATTTAAGCCATTAGCCCAATCTCCATAAGCAGTAGTGGAGTACGTTGAAGATTGCAGACTCT
66 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
*
79742457 AT
131 GT
* ** * * * *
79742459 CACCTTAAGCAGTAGTGGAGTGGATCGAAGATAGTGAATCTTATCTTCCTAATATAGTGGAGTAG
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
* * * * * * *
79742524 AAGATTTAAGCCATTAGTCCTGTCTCCCTAAGAAGCAGTGGAGTGGGTTGAAGATTACA-ATTTC
66 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA-TTC
79742588 TGT
130 TGT
* * * * * * *
79742591 CACCCTAAGCAGTAGTGGAGTAGACCGAAAATAGTGAATCTTATCTTCCCAAAACAGTAGAGGAG
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
* * * **
79742656 AAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTAAAGATTATAGATTCT
66 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
79742721 GT
131 GT
* * *** * * *
79742723 CACCCTAAACAGTAGTGGGGCAGATCGAAGAAAATAAATCTTACCTTCCCAATATAGTGGAGAAG
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
* ** *
79742788 CAGATTGAAGCCATTAGTCAGATCACCCTAAGCAGTAGTGGAGCAGGTTGAAGATTGCAGATTCT
66 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
79742853 GT
131 GT
* * * * *
79742855 CAACCTAAGTAGTAGTGGAGCAGATCGAATATGGTGAATCTTATCTTCCGAATACAATGGAGAAG
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
* * * * *
79742920 CAGATTTAAACCATTAGTCCTACCACCCTAAGCAGTAGTCGAGTAGGTTAAAGATTGTAGATTCT
66 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
79742985 GT
131 GT
* *
79742987 CACCCTAAGCAGTAGTGGAGCAGAACGAAGATGGTGAATCTTATCTTCCTAATACAGTGGAGAAG
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
* * * *
79743052 CAGATTTAAGCCATTAGTCCTATCACCCTAAGTAGTAGTGGAGTTGGTTGAAGATTGTAGATTCC
66 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
79743117 GT
131 GT
** *
79743119 CACCCTAAGCAGTAGTGGAGTC-GATCGAAGATGGTGAATCTTATCTTCCCAGCACAGTTGAGAA
1 CACCCTAAGCAGTAGTGGAG-CAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* **
79743183 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTGGTGGAGTAGGTTGAAGATTTTAGATTC
65 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
79743248 TGT
130 TGT
* * * * ** * * * *
79743251 CACCCTAAGCAGTAGGGGAGTAGGTTGAAGATTTATG-ATACTT-TC-ACCCTAA-GCAGTAGTG
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGA-TGGTGAAT-CTTATCTTCCC-AATACAGTGGAG
* * ** * ** * * * * **
79743312 GAGCAAATCAAAG--ATGGTGAATCCTATGTTCCC-AA-TA-CAGTGAAGAAGCAGTTGTGGA--
63 AAGCAGATTTAAGCCAT--T-AGTCCTAT-CACCCTAAGCAGTAGTGGAGTAG--GTTGAAGATT
*
79743370 GCTAG--TCCGAT
122 GC-AGATTCTG-T
79743381 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
* * * * * *
79743446 TAGATTTAAGGCATTAGTCCTATCACCCTAAGCTGTAGTAGAGTTGGTTGAAGATTGCCGATTCT
66 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
79743511 GT
131 GT
* * * * * * * *
79743513 CACCCTAGGTAGTAGTGGATCAGATAGAAGTTGGTGAATCTTATCTTCCCAACACGGTTGAGAAG
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
*
79743578 CAGATTTAAGCCATTAGTCCTATGACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
66 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
79743643 GT
131 GT
* * *
79743645 TA-CCTAAGAAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCTAATACAGTGGAGAAG
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
* *
79743709 TAGATTTAAGCCATTAGTCCTATGACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
66 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
79743774 GT
131 GT
* * *
79743776 CAGCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAAATAGTGGAGAAG
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
* * *
79743841 CAGATTTAAGCCATTAGTCCAATCACCCTAGGAAGTAGTGGA
66 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGA
79743883 ACAGGTCGAA
Statistics
Matches: 3184, Mismatches: 437, Indels: 88
0.86 0.12 0.02
Matches are distributed among these distances:
129 14 0.00
130 58 0.02
131 512 0.16
132 2578 0.81
133 22 0.01
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (132 bp):
CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
GT
Found at i:79744037 original size:132 final size:131
Alignment explanation
Indices: 79743863--79744931 Score: 940
Period size: 132 Copynumber: 7.8 Consensus size: 131
79743853 ATTAGTCCAA
* * * * ** * * *
79743863 TCACCCTAGGAAGTAGTGGAACAGGTCGAAGATGGTGAATCTTATCTTCAAAAGAGAGTGCAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * *
79743928 GCAGATTTAAGCAATTAGTCCTACCACCCTAAGGAGTGGTGGAGTAGGTTGAAGATTGCAAATTC
66 GCAGATTTAAGC-ATTAGTCCTACCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
79743993 TG
130 TG
* * * *
79743995 TCACCTTAAGCAGTAGTGGAGCAGATCGAAGATAGCGAATCTTATCTTCCTAATACAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * *
79744060 GTAGATTTAAGCCATTAGTCCTATCACCCAAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
66 GCAGATTTAAG-CATTAGTCCTACCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
79744125 TG
130 TG
* * * * *
79744127 TCAACCTAAGTAGTAGTGGAGCTGATCGAAGATGGAGAATCTTATCTTCCCAATACAATGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * *
79744192 GCAGATTTAAATCATTAGTCCTACCACCCTAAGCAGTAGTCGAGTAGGTTGAAGATTGTAGATTC
66 GCAGATTT-AAGCATTAGTCCTACCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
79744257 TG
130 TG
* * * *
79744259 TCACCCTAAGCAGTAGTGGAGCAGATCGAATATGATGAATCTTACCTTCCCAATACAGTTGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * * *
79744324 GCAGATTTAAGCGATCAGTCCTATCACGCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCTGATTC
66 GCAGATTTAAGC-ATTAGTCCTACCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
*
79744389 TT
130 TG
* * * * *
79744391 TCACCCTAACCAGTAGTGGAGCAAATCGAAGATGGTGAATCCTATGTTCCCAATACAGTGAAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * * *** * * * * *
79744456 GCAGATGTGGAGCAGATCGAAGATAGTGAATCTTATGTTCCC-AATACAGT-GAAGAAGCAGTTG
66 GCAGAT-T-TA--AG--C----AT--T-AGTCCTA-CCACCCTAA-GCAGTAG-TGGAGTAGGT-
* ** * **
79744519 TGGAGCAGATCGAAGATGGTG
114 TGAAG-ATT--GCAGATTCTG
*
79744540 AATCCTATGTTCCC-AATACAGTGAAGAAGCAGTTGTGGAGCAGATCGAAGATGGTGAATCTTAT
1 --T-C-A----CCCTAA-GCAGT--------A---GTGGAGCAGATCGAAGATGGTGAATCTTAT
* * * * * *
79744604 GTTCCCAATACAATAGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAATGGAGT
46 CTTCCCAATACAGTGGAGAAGCAGATTTAAG-CATTAGTCCTACCACCCTAAGCAGTAGTGGAGT
79744669 AGGTTGAAGATTGCAGATTCTG
110 AGGTTGAAGATTGCAGATTCTG
* * * * *
79744691 TCACCCTAAGCAGTAGTGGAGCAGATTGAATATGATGAATCATACCTTCCCAATACAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* ** * *
79744756 ACAGATTTAAGCCACCAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATT-TATGATT
66 GCAGATTTAAG-CATTAGTCCTACCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA-GATT
*
79744820 CTT
129 CTG
* * * * *
79744823 TCACCCTAAGCAATAGTGGAGCAAATCGAAGATGGTGAATCCTATGTTCCCAATATAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
*
79744888 GCAGATTTAAGCCATTAGTCCTACCACTCTAAGCAGTAGTGGAG
66 GCAGATTTAAG-CATTAGTCCTACCACCCTAAGCAGTAGTGGAG
79744932 CAGATCGAAG
Statistics
Matches: 756, Mismatches: 135, Indels: 92
0.77 0.14 0.09
Matches are distributed among these distances:
131 4 0.01
132 595 0.79
133 4 0.01
134 1 0.00
135 1 0.00
136 2 0.00
138 1 0.00
141 3 0.00
143 7 0.01
144 10 0.01
145 12 0.02
146 4 0.01
147 2 0.00
148 1 0.00
149 6 0.01
151 8 0.01
152 1 0.00
153 2 0.00
154 4 0.01
155 13 0.02
156 9 0.01
157 8 0.01
159 2 0.00
163 1 0.00
164 2 0.00
165 1 0.00
166 1 0.00
167 1 0.00
168 50 0.07
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (131 bp):
TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
GCAGATTTAAGCATTAGTCCTACCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
G
Found at i:79744037 original size:220 final size:220
Alignment explanation
Indices: 79743647--79744102 Score: 680
Period size: 220 Copynumber: 2.1 Consensus size: 220
79743637 GATTCTGTTA
* ** * * *
79743647 CCTAAGAAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCTAATACAGTGGAGAAGTAG
1 CCTAAGAAGTAGTGGAACAGATCGAAGATGGTGAATCTTATCTTCAAAAGACAGTGCAGAAGCAG
* ** *
79743712 ATTTAAGCCATTAGTCCTATGACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTC
66 ATTTAAGCAATTAGTCCTACCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAAATTCTGTC
* * *
79743777 AGCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAAATAGTGGAGAAGC
131 AGCCTAAGCAGTAGTGGAGCAGATCGAAGATAGCGAATCTTATCTTCCCAAAACAGTGGAGAAGC
79743842 AGATTTAAGCCATTAGTCCAATCAC
196 AGATTTAAGCCATTAGTCCAATCAC
* * *
79743867 CCTAGGAAGTAGTGGAACAGGTCGAAGATGGTGAATCTTATCTTCAAAAGAGAGTGCAGAAGCAG
1 CCTAAGAAGTAGTGGAACAGATCGAAGATGGTGAATCTTATCTTCAAAAGACAGTGCAGAAGCAG
* *
79743932 ATTTAAGCAATTAGTCCTACCACCCTAAGGAGTGGTGGAGTAGGTTGAAGATTGCAAATTCTGTC
66 ATTTAAGCAATTAGTCCTACCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAAATTCTGTC
* *
79743997 A-CCTTAAGCAGTAGTGGAGCAGATCGAAGATAGCGAATCTTATCTTCCTAATACAGTGGAGAAG
131 AGCC-TAAGCAGTAGTGGAGCAGATCGAAGATAGCGAATCTTATCTTCCCAAAACAGTGGAGAAG
* *
79744061 TAGATTTAAGCCATTAGTCCTATCAC
195 CAGATTTAAGCCATTAGTCCAATCAC
* *
79744087 CCAAAGCAGTAGTGGA
1 CCTAAGAAGTAGTGGA
79744103 GTAGGTTGAA
Statistics
Matches: 210, Mismatches: 25, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
219 2 0.01
220 208 0.99
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (220 bp):
CCTAAGAAGTAGTGGAACAGATCGAAGATGGTGAATCTTATCTTCAAAAGACAGTGCAGAAGCAG
ATTTAAGCAATTAGTCCTACCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAAATTCTGTC
AGCCTAAGCAGTAGTGGAGCAGATCGAAGATAGCGAATCTTATCTTCCCAAAACAGTGGAGAAGC
AGATTTAAGCCATTAGTCCAATCAC
Found at i:79744211 original size:264 final size:263
Alignment explanation
Indices: 79743863--79744931 Score: 1041
Period size: 264 Copynumber: 3.9 Consensus size: 263
79743853 ATTAGTCCAA
* * * * ** * * *
79743863 TCACCCTAGGAAGTAGTGGAACAGGTCGAAGATGGTGAATCTTATCTTCAAAAGAGAGTGCAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * * *
79743928 GCAGATTTAAGCAATTAGTCCTACCACCCTAAGGAGTGGTGGAGTAGGTTGAAGATTGCAAATTC
66 GCAGATTTAAGC-ATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
* * * *
79743993 TGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATAGCGAATCTTATCTTCCTAATACAGTGGAG
130 TGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAG
* *
79744058 AAGTAGATTTAAGCCATTAGTCCTATCACCCAAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGAT
195 AAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGAT
79744123 TCTG
260 TCTG
* * * * *
79744127 TCAACCTAAGTAGTAGTGGAGCTGATCGAAGATGGAGAATCTTATCTTCCCAATACAATGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * * *
79744192 GCAGATTTAAATCATTAGTCCTACCACCCTAAGCAGTAGTCGAGTAGGTTGAAGATTGTAGATTC
66 GCAGATTT-AAGCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
* * * *
79744257 TGTCACCCTAAGCAGTAGTGGAGCAGATCGAATATGATGAATCTTACCTTCCCAATACAGTTGAG
130 TGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAG
* * * *
79744322 AAGCAGATTTAAGCGATCAGTCCTATCACGCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCTGAT
195 AAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGAT
*
79744387 TCTT
260 TCTG
* * * * *
79744391 TCACCCTAACCAGTAGTGGAGCAAATCGAAGATGGTGAATCCTATGTTCCCAATACAGTGAAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * * *
79744456 GCAGATGTGGAGCAGATCGAAGATAGTGAATCTTATGTTC-CCAATACAGTGAAGAAGCAGTTGT
66 GCAGAT-T-TA--AG--C----AT--T-AGTCCTA---TCACC----C--T----AAGCAGTAGT
* * * * *
79744520 GGAGCAGATCGAAGATGGTG-A-ATCCTATGTTC-CCAATACAGTGAAGAAGCAGTTGTGGAGCA
105 GGAGTAGGTTGAAGAT--TGCAGAT--TCTG-TCACC----C--T----AAGCAGTAGTGGAGCA
* * * *
79744582 GATCGAAGATGGTGAATCTTATGTTCCCAATACAATAGAGAAGTAGATTTAAGCCATTAGTCCTA
155 GATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTA
*
79744647 TCACCCTAAGCAGTAATGGAGTAGGTTGAAGATTGCAGATTCTG
220 TCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTG
* * * * *
79744691 TCACCCTAAGCAGTAGTGGAGCAGATTGAATATGATGAATCATACCTTCCCAATACAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* ** *
79744756 ACAGATTTAAGCCACCAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATT-TATGATT
66 GCAGATTTAAG-CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA-GATT
* * * * * *
79744820 CTTTCACCCTAAGCAATAGTGGAGCAAATCGAAGATGGTGAATCCTATGTTCCCAATATAGTGGA
129 CTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGA
* *
79744885 GAAGCAGATTTAAGCCATTAGTCCTACCACTCTAAGCAGTAGTGGAG
194 GAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAG
79744932 CAGATCGAAG
Statistics
Matches: 656, Mismatches: 102, Indels: 94
0.77 0.12 0.11
Matches are distributed among these distances:
264 378 0.58
265 5 0.01
267 1 0.00
268 1 0.00
269 1 0.00
270 1 0.00
273 4 0.01
274 6 0.01
275 1 0.00
276 29 0.04
278 2 0.00
279 1 0.00
280 1 0.00
282 2 0.00
284 1 0.00
285 2 0.00
286 2 0.00
288 28 0.04
289 1 0.00
290 7 0.01
291 3 0.00
294 1 0.00
295 1 0.00
296 3 0.00
298 1 0.00
299 1 0.00
300 172 0.26
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (263 bp):
TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
GCAGATTTAAGCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
GTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGA
AGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
CTG
Found at i:79744624 original size:56 final size:56
Alignment explanation
Indices: 79744401--79744615 Score: 376
Period size: 56 Copynumber: 3.8 Consensus size: 56
79744391 TCACCCTAAC
* *
79744401 CAGTAGTGGAGCAAATCGAAGATGGTGAATCCTATGTTCCCAATACAGTGAAGAAG
1 CAGTTGTGGAGCAGATCGAAGATGGTGAATCCTATGTTCCCAATACAGTGAAGAAG
* * *
79744457 CAGATGTGGAGCAGATCGAAGATAGTGAATCTTATGTTCCCAATACAGTGAAGAAG
1 CAGTTGTGGAGCAGATCGAAGATGGTGAATCCTATGTTCCCAATACAGTGAAGAAG
79744513 CAGTTGTGGAGCAGATCGAAGATGGTGAATCCTATGTTCCCAATACAGTGAAGAAG
1 CAGTTGTGGAGCAGATCGAAGATGGTGAATCCTATGTTCCCAATACAGTGAAGAAG
*
79744569 CAGTTGTGGAGCAGATCGAAGATGGTGAATCTTATGTTCCCAATACA
1 CAGTTGTGGAGCAGATCGAAGATGGTGAATCCTATGTTCCCAATACA
79744616 ATAGAGAAGT
Statistics
Matches: 150, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 150 1.00
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.24
Consensus pattern (56 bp):
CAGTTGTGGAGCAGATCGAAGATGGTGAATCCTATGTTCCCAATACAGTGAAGAAG
Found at i:79744998 original size:132 final size:131
Alignment explanation
Indices: 79744916--79746073 Score: 1638
Period size: 132 Copynumber: 8.8 Consensus size: 131
79744906 TCCTACCACT
* *
79744916 CTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGTGAAGCAGA
1 CTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGTAGA
* *
79744981 TTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTTGGTTGAAGATTGCCGATTCTGTCA
66 TTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATT-CAGATTCTGTCA
79745046 CC
130 CC
* * * * * *
79745048 CTAGGCAGTAGTGG-GTCAGATAGAAGTTGGTGAATCTTATCTTCCCAACACGGTTGAGAAGTAG
1 CTAAGCAGTAGTGGAG-CAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGTAG
*
79745112 ATTTACGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTC
65 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATT-CAGATTCTGTC
79745177 ACC
129 ACC
* *
79745180 CTAAGCAGTAGTGGAGCAGATCGAAGATAGTGAATCTTATCTTCCCAATAAAGTGGAGAAGTAGA
1 CTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGTAGA
* * * * * *
79745245 TTTAAGCTATTAGTCCAATCACCCTAAGCAGTAGTGGAGTCGGTCGAGGATTACAGATT-TTTCA
66 TTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATT-CAGATTCTGTCA
79745309 CC
130 CC
** * * * * **
79745311 CTAATAAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCTCAAGAGAGTGTAGAAACAGA
1 CTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGTAGA
* * * *
79745376 TTTAAGCCATTAGTCCTACCACCCTAAGGAGTGGTGGACTAGGTTGAAGATTGCAGATTCTGTCA
66 TTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATT-CAGATTCTGTCA
79745441 CC
130 CC
* *
79745443 CTAAGCAGTAGTGGAGCAGATCGAAGATAGTGAATCTTATCTTCCCAATAAAGTGGAGAAGTAGA
1 CTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGTAGA
* * *
79745508 TTGAAGCTATTAGTCCTATCACCCTAAGTAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCA
66 TTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATT-CAGATTCTGTCA
79745573 CC
130 CC
* * * * * * * *
79745575 CTGAGCTGTAGTGGAACAGATCGAATATGGTGAATCTCATCTTCCAAATACAATGGAGAAGCAGA
1 CTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGTAGA
* * *
79745640 TTTAAGCTATTAGTCCTATCACCCTAAGCAGTATTGGAGTAGGTTGAAGATTGCAGATTCTATCA
66 TTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATT-CAGATTCTGTCA
79745705 CC
130 CC
* * *
79745707 CTAAGCAGTAGTGGAGCAGATCGATGATGGGGAATCTGATCTTCCCAATACAGTGGAGAAGTAGA
1 CTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGTAGA
* *
79745772 TTTAAGCCATTAGTCCTATCACCCTAAGCCGTCGTGGAGTAGGTTGAAGATTGCAGATTCTGTCA
66 TTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATT-CAGATTCTGTCA
79745837 CC
130 CC
* * *
79745839 CTAAGCAGTAGTGGAGCAGATCGATGATGGGGAATCTGATCTTCCCAATACAGTGGAGAAGTAGA
1 CTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGTAGA
* *
79745904 TTTAAGCCATTAGTCCTATCACCCTAAGCCGTCGTGGAGTAGGTTGAAGATTGCAGATTCTGTCA
66 TTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATT-CAGATTCTGTCA
79745969 CC
130 CC
* * * * *
79745971 CTAAGCAGTAGTGGATCAGATCGAA-ATGATGAATCTTACCTTCCCAATATAGTGGAGAAGCAGA
1 CTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGTAGA
* *
79746035 TTTAAGCTATCAGTCCTATCACCCTAAGCAGTAGTGGAG
66 TTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAG
79746074 CAGATCGAAG
Statistics
Matches: 920, Mismatches: 103, Indels: 7
0.89 0.10 0.01
Matches are distributed among these distances:
131 180 0.20
132 739 0.80
133 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (131 bp):
CTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGTAGA
TTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTCAGATTCTGTCAC
C
Found at i:79744999 original size:220 final size:220
Alignment explanation
Indices: 79744692--79745151 Score: 643
Period size: 220 Copynumber: 2.1 Consensus size: 220
79744682 CAGATTCTGT
* *
79744692 CACCCTAAGCAGTAGTGGAGCAGATTGAATATGATGAATCATACCTTCCCAATACAGTGGAGAAA
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAATCATACCTTCCCAATACAGTGGAGAAA
* *
79744757 CAGATTTAAGCCACCAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTTATGATTCT
66 CAGATTTAAGCCACCAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGACGATTCT
* * * * *
79744822 TTCACCCTAAGCAATAGTGGAG-CAAATCGAAGATGGTGAATCCTATGTTCCCAATATAGTGGAG
131 GTCACCCTAAGCAATAGTGG-GTCAAATAGAAGATGGTGAATCCTATCTTCCCAACACAGTGGAG
79744886 AAGCAGATTTAAGCCATTAGTCCTAC
195 AAGCAGATTTAAGCCATTAGTCCTAC
* * * * * *
79744912 CACTCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGTGAAG
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAATCATACCTTCCCAATACAGTGGAGAAA
** * *
79744977 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTTGGTTGAAGATTGCCGATTCT
66 CAGATTTAAGCCACCAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGACGATTCT
* * * * * * *
79745042 GTCACCCTAGGCAGTAGTGGGTCAGATAGAAGTTGGTGAATCTTATCTTCCCAACACGGTTGAGA
131 GTCACCCTAAGCAATAGTGGGTCAAATAGAAGATGGTGAATCCTATCTTCCCAACACAGTGGAGA
* * *
79745107 AGTAGATTTACGCCATTAGTCCTAT
196 AGCAGATTTAAGCCATTAGTCCTAC
79745132 CACCCTAAGCAGTAGTGGAG
1 CACCCTAAGCAGTAGTGGAG
79745152 TAGGTTGAAG
Statistics
Matches: 209, Mismatches: 30, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
219 1 0.00
220 208 1.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.26
Consensus pattern (220 bp):
CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAATCATACCTTCCCAATACAGTGGAGAAA
CAGATTTAAGCCACCAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGACGATTCT
GTCACCCTAAGCAATAGTGGGTCAAATAGAAGATGGTGAATCCTATCTTCCCAACACAGTGGAGA
AGCAGATTTAAGCCATTAGTCCTAC
Found at i:79745031 original size:88 final size:88
Alignment explanation
Indices: 79744823--79745019 Score: 322
Period size: 88 Copynumber: 2.2 Consensus size: 88
79744813 TATGATTCTT
* * * *
79744823 TCACCCTAAGCAATAGTGGAGCAAATCGAAGATGGTGAATCCTATGTTCCCAATATAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCCTATCTTCCCAATACAGTGGAGAA
79744888 GCAGATTTAAGCCATTAGTCCTA
66 GCAGATTTAAGCCATTAGTCCTA
* * * *
79744911 CCACTCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGTGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCCTATCTTCCCAATACAGTGGAGAA
79744976 GCAGATTTAAGCCATTAGTCCTA
66 GCAGATTTAAGCCATTAGTCCTA
79744999 TCACCCTAAGCAGTAGTGGAG
1 TCACCCTAAGCAGTAGTGGAG
79745020 TTGGTTGAAG
Statistics
Matches: 99, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
88 99 1.00
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (88 bp):
TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCCTATCTTCCCAATACAGTGGAGAA
GCAGATTTAAGCCATTAGTCCTA
Found at i:79745772 original size:527 final size:527
Alignment explanation
Indices: 79744916--79746073 Score: 1730
Period size: 527 Copynumber: 2.2 Consensus size: 527
79744906 TCCTACCACT
* *
79744916 CTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGTGAAGCAGA
1 CTAAGCAGTAGTGGAGCAGATCGAAGAT-GTGAATCTTATCTTCCCAATAAAGTGGAGAAGCAGA
* * *
79744981 TTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTTGGTTGAAGATTGCCGATTCTGTCA
65 TTTAAGCTATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCA
** * * ** * *
79745046 CCCTAGGCAGTAGTGGGTCAGATAGAAGTTGGTGAATCTTATCTTCCCAACACGGTTGAGAAGTA
130 CCCTAGGCAGTAGTGGAACAGATAGAAGTTGGTGAATCTCATCTTCCAAACACAATGGAGAAGCA
* *
79745111 GATTTACGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGT
195 GATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTAT
* *
79745176 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATAGTGAATCTTATCTTCCCAATAAAGTGGAGAAG
260 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATAGGGAATCTGATCTTCCCAATAAAGTGGAGAAG
* * *
79745241 TAGATTTAAGCTATTAGTCCAATCACCCTAAGCAGTAGTGGAGTCGGTCGAGGATTACAGATT-T
325 TAGATTTAAGCCATTAGTCCAATCACCCTAAGCAGTAGTGGAGTAGGTCGAAGATTACAGATTCT
* * * * * * *
79745305 TTCACCCTAATAAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCTCAAGAGAGTGTAGA
390 GTCACCCTAAGAAGTAGTGGAGCAGATCGAAGATGGGGAATCTGATCTTCCCAAGACAGTGGAGA
* *
79745370 AACAGATTTAAGCCATTAGTCCTACCACCCTAAGGAGTGGTGGACTAGGTTGAAGATTGCAGATT
455 AACAGATTTAAGCCATTAGTCCTACCACCCTAAGCAGTCGTGGACTAGGTTGAAGATTGCAGATT
79745435 CTGTCACC
520 CTGTCACC
*
79745443 CTAAGCAGTAGTGGAGCAGATCGAAGATAGTGAATCTTATCTTCCCAATAAAGTGGAGAAGTAGA
1 CTAAGCAGTAGTGGAGCAGATCGAAGAT-GTGAATCTTATCTTCCCAATAAAGTGGAGAAGCAGA
* *
79745508 TTGAAGCTATTAGTCCTATCACCCTAAGTAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCA
65 TTTAAGCTATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCA
* * *
79745573 CCCT-GAGCTGTAGTGGAACAGATCGAA-TATGGTGAATCTCATCTTCCAAATACAATGGAGAAG
130 CCCTAG-GCAGTAGTGGAACAGATAGAAGT-TGGTGAATCTCATCTTCCAAACACAATGGAGAAG
* *
79745636 CAGATTTAAGCTATTAGTCCTATCACCCTAAGCAGTATTGGAGTAGGTTGAAGATTGCAGATTCT
193 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
* * *
79745701 ATCACCCTAAGCAGTAGTGGAGCAGATCGATGATGGGGAATCTGATCTTCCCAATACAGTGGAGA
258 ATCACCCTAAGCAGTAGTGGAGCAGATCGAAGATAGGGAATCTGATCTTCCCAATAAAGTGGAGA
* * * * *
79745766 AGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCCGTCGTGGAGTAGGTTGAAGATTGCAGATT
323 AGTAGATTTAAGCCATTAGTCCAATCACCCTAAGCAGTAGTGGAGTAGGTCGAAGATTACAGATT
* * *
79745831 CTGTCACCCTAAGCAGTAGTGGAGCAGATCGATGATGGGGAATCTGATCTTCCCAATACAGTGGA
388 CTGTCACCCTAAGAAGTAGTGGAGCAGATCGAAGATGGGGAATCTGATCTTCCCAAGACAGTGGA
** * * *
79745896 GAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCCGTCGTGGAGTAGGTTGAAGATTGCAGA
453 GAAACAGATTTAAGCCATTAGTCCTACCACCCTAAGCAGTCGTGGACTAGGTTGAAGATTGCAGA
79745961 TTCTGTCACC
518 TTCTGTCACC
* * *
79745971 CTAAGCAGTAGTGGATCAGATCGAA-ATGATGAATCTTACCTTCCCAATATAGTGGAGAAGCAGA
1 CTAAGCAGTAGTGGAGCAGATCGAAGATG-TGAATCTTATCTTCCCAATAAAGTGGAGAAGCAGA
*
79746035 TTTAAGCTATCAGTCCTATCACCCTAAGCAGTAGTGGAG
65 TTTAAGCTATTAGTCCTATCACCCTAAGCAGTAGTGGAG
79746074 CAGATCGAAG
Statistics
Matches: 566, Mismatches: 61, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
526 3 0.01
527 417 0.74
528 146 0.26
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (527 bp):
CTAAGCAGTAGTGGAGCAGATCGAAGATGTGAATCTTATCTTCCCAATAAAGTGGAGAAGCAGAT
TTAAGCTATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCAC
CCTAGGCAGTAGTGGAACAGATAGAAGTTGGTGAATCTCATCTTCCAAACACAATGGAGAAGCAG
ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTATC
ACCCTAAGCAGTAGTGGAGCAGATCGAAGATAGGGAATCTGATCTTCCCAATAAAGTGGAGAAGT
AGATTTAAGCCATTAGTCCAATCACCCTAAGCAGTAGTGGAGTAGGTCGAAGATTACAGATTCTG
TCACCCTAAGAAGTAGTGGAGCAGATCGAAGATGGGGAATCTGATCTTCCCAAGACAGTGGAGAA
ACAGATTTAAGCCATTAGTCCTACCACCCTAAGCAGTCGTGGACTAGGTTGAAGATTGCAGATTC
TGTCACC
Found at i:79745839 original size:44 final size:44
Alignment explanation
Indices: 79745790--79745985 Score: 132
Period size: 44 Copynumber: 4.5 Consensus size: 44
79745780 ATTAGTCCTA
* * *
79745790 TCACCCTAAGCCGTCGTGGAGTAGGTTGAAGATTGCAGATTCTG
1 TCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGCAGATTCTG
* * * ** *
79745834 TCACCCTAAGCAGTAGTGGAGCAGATCGATGA-TGGGGAATCTG
1 TCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGCAGATTCTG
* * * * * * * *
79745877 ATCTTCCC-AATACAGTGGAGAAGTAGATTTAAGCCATT--AG-TCCTA
1 -TC-ACCCTAA-GCAGTAGTGGAGTAGATTGAAG--ATTGCAGATTCTG
* * *
79745922 TCACCCTAAGCCGTCGTGGAGTAGGTTGAAGATTGCAGATTCTG
1 TCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGCAGATTCTG
79745966 TCACCCTAAGCAGTAGTGGA
1 TCACCCTAAGCAGTAGTGGA
79745986 TCAGATCGAA
Statistics
Matches: 108, Mismatches: 34, Indels: 20
0.67 0.21 0.12
Matches are distributed among these distances:
41 3 0.03
43 28 0.26
44 55 0.51
45 19 0.18
46 1 0.01
47 1 0.01
48 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (44 bp):
TCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGCAGATTCTG
Found at i:79746119 original size:88 final size:87
Alignment explanation
Indices: 79745966--79746157 Score: 294
Period size: 88 Copynumber: 2.2 Consensus size: 87
79745956 GCAGATTCTG
* *
79745966 TCACCCTAAGCAGTAGTGGATCAGATCGAAATGATGAATCTTACCTTCCCAATATAGTGGAGAAG
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAATGATGAATCTTACCTTCCCAATACAGTGGAGAAG
*
79746031 CAGATTTAAGCTATCAGTCCTA
66 CAGATTTAAGCCATCAGTCCTA
* **
79746053 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATGTTCCCAATACAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAA-ATGATGAATCTTACCTTCCCAATACAGTGGAGAA
*
79746118 GCAGATTTAAGCCATTAGTCCTA
65 GCAGATTTAAGCCATCAGTCCTA
* *
79746141 CCACCCTAAGCAATAGT
1 TCACCCTAAGCAGTAGT
79746158 CGAGTAAGTT
Statistics
Matches: 95, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
87 29 0.31
88 66 0.69
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (87 bp):
TCACCCTAAGCAGTAGTGGAGCAGATCGAAATGATGAATCTTACCTTCCCAATACAGTGGAGAAG
CAGATTTAAGCCATCAGTCCTA
Found at i:79746203 original size:132 final size:132
Alignment explanation
Indices: 79746053--79747245 Score: 1552
Period size: 132 Copynumber: 9.1 Consensus size: 132
79746043 ATCAGTCCTA
*
79746053 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATGTTCCCAATACAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * * ** **
79746118 GCAGATTTAAGCCATTAGTCCTACCACCCTAAGCAATAGTCGAGTAAGTTTTAGATTGCAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTCGGTTGAAGATTGCAGATTC
79746183 TG
131 TG
* * *
79746185 TCA-CCTAAAGCAGTAGTGGAGTAGATCCAATATGGTGAATCTTATCTTCCCAATACAGTGGAGA
1 TCACCCT-AAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGA
* *
79746249 AGCAGATTTAAGCTATTAGTCCTATCACCCTAAGCAGTAGTGGAGTCGGTTAAAGATTGCAGATT
65 AGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTCGGTTGAAGATTGCAGATT
*
79746314 CTA
130 CTG
* * *
79746317 TCACCCTAAGCAATAGT-GATGTAGATCGAAGATGGTGAATCTTATCTTCCCAACACAGTGGAGA
1 TCACCCTAAGCAGTAGTGGA-GCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGA
*
79746381 AGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTCGGTTAAAGATTGCAGATT
65 AGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTCGGTTGAAGATTGCAGATT
*
79746446 CTA
130 CTG
* * * *
79746449 TCACCCTAAGCAATAGT-GATGTAGATCGAAGATGGTGAATCTTATCTTCCCAATATAGTGGGGA
1 TCACCCTAAGCAGTAGTGGA-GCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGA
* * * *
79746513 AGCAGATTTAAACCATTAGT-CAATCACCCTAAGCAGTAGTGGTGTCGGTTGAAGATTACAGATT
65 AGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTCGGTTGAAGATTGCAGATT
*
79746577 TTG
130 CTG
* * **
79746580 TCACCCTAAGAAGTAGTGGAGCAGATCGAAGATGGTGATTCTTATCTTCCCAACGCAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
** * * * *
79746645 GTGGATTTAAGCCATTCGTCCTACCACCCTAAGCAGTAGTCGAGTAGGTTGAAGATAT-CAGATT
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTCGGTTGAAGAT-TGCAGATT
79746709 CTG
130 CTG
* * * * *
79746712 CCACCGTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCCTATCTTCCCAAAATAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * *
79746777 GTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTTCAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTCGGTTGAAGATTGCAGATTC
79746842 TG
131 TG
* * ** * * *
79746844 CCACCCTGAGCAGTAGTGGAGCAGATCGAATTTGGTGAATCTCATCTTCCAAATACAATGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * * * *
79746909 GAAGATTTCAGCCATTAGTCCTATCACCCTAAGTAGTAGTGGAGTCAGTTGAAGATTACAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTCGGTTGAAGATTGCAGATTC
79746974 TG
131 TG
* * * *
79746976 TCACCCTAAGCAGTAGTCGAGCAGATTGAAGATGGTGATTCTTATCTTCCCAACACAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * * * * * * *
79747041 GCAGATTTGAGCCATCAGTCTTATCAGCCTAAGCAGTAGTGGCGTGGGTTGAAGATTGGAGATAC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTCGGTTGAAGATTGCAGATTC
79747106 TG
131 TG
* * * * * * * * * * *
79747108 TCACTCTAAGCAGTAGTGGAGCGGATTGAAGATGGCGAATCATATCTTCTCAAGATAATGAAGTA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* *
79747173 GCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTCGGTCGAAGATTGCAGATT-
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTCGGTTGAAGATTGCAGATTC
*
79747237 TT
131 TG
79747239 TCACCCT
1 TCACCCT
79747246 CCAATATAGT
Statistics
Matches: 933, Mismatches: 121, Indels: 15
0.87 0.11 0.01
Matches are distributed among these distances:
131 123 0.13
132 806 0.86
133 4 0.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (132 bp):
TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTCGGTTGAAGATTGCAGATTC
TG
Found at i:79746320 original size:44 final size:44
Alignment explanation
Indices: 79746270--79746466 Score: 131
Period size: 44 Copynumber: 4.5 Consensus size: 44
79746260 GCTATTAGTC
* *
79746270 CTATCACCCTAAGCAGTAGTGGAGTCGGTTAAAGATTGCAGATT
1 CTATCACCCTAAGCAATAGTGGAGTCGATTAAAGATTGCAGATT
* ** ** *
79746314 CTATCACCCTAAGCAATAGT-GATGTAGATCGAAGA-TGGTGAAT
1 CTATCACCCTAAGCAATAGTGGA-GTCGATTAAAGATTGCAGATT
* * * * *
79746357 CTTATCTTCCC-AA-C-ACAGTGGAGAAGCAGATTTAAGCCATT--AG-TC
1 C-TATC-ACCCTAAGCAATAGTGGAG--TC-GATTAAAG--ATTGCAGATT
* *
79746402 CTATCACCCTAAGCAGTAGTGGAGTCGGTTAAAGATTGCAGATT
1 CTATCACCCTAAGCAATAGTGGAGTCGATTAAAGATTGCAGATT
79746446 CTATCACCCTAAGCAATAGTG
1 CTATCACCCTAAGCAATAGTG
79746467 ATGTAGATCG
Statistics
Matches: 112, Mismatches: 25, Indels: 32
0.66 0.15 0.19
Matches are distributed among these distances:
41 3 0.03
42 5 0.04
43 22 0.20
44 61 0.54
45 11 0.10
46 8 0.07
47 1 0.01
48 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.26
Consensus pattern (44 bp):
CTATCACCCTAAGCAATAGTGGAGTCGATTAAAGATTGCAGATT
Found at i:79747046 original size:527 final size:527
Alignment explanation
Indices: 79746053--79747236 Score: 1604
Period size: 527 Copynumber: 2.2 Consensus size: 527
79746043 ATCAGTCCTA
* *
79746053 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATGTTCCCAATACAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAA-GCAGTGGAGAA
* * **
79746118 GCAGATTTAAGCCATTAGTCCTACCACCCTAAGCAATAGTCGAGTAAGTTTTAGATTGCAGATTC
65 GCAGATTTAAGCCATTAGTCCTACCACCCTAAGCAGTAGTCGAGTAGGTTGAAGATTGCAGATTC
* * * * *
79746183 TGTCACCTAAAGCAGTAGTGGAGTAGATCCAATATGGTGAATCTTATCTTCCCAATACAGTGGAG
130 TGCCACCTAAAGCAGTAGTGGAGCAGATCCAAGATGGTGAATCCTATCTTCCCAAAACAGTGGAG
* *
79746248 AAGCAGATTTAAGCTATTAGTCCTATCACCCTAAGCAGTAGTGGAGTCGGTTAAAGATTGCAGAT
195 AAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGAT
* * * * *
79746313 TCTATCACCCTAAGCAATAGTGATGTAGATCGAAGATGGTGAATCTTATCTTCCCAACACAGTGG
260 TCTACCACCCTAAGCAATAGTGATGCAGATCGAAGATGGTGAATCTCATCTTCCAAACACAATGG
* * *
79746378 AGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTCGGTTAAAGATTGCAG
325 AGAAGAAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTCAGTTAAAGATTACAG
* * *
79746443 ATTCTATCACCCTAAGCAATAGTGATGTAGATCGAAGATGGTGAATCTTATCTTCCCAATATAGT
390 ATTCTATCACCCTAAGCAATAGTGATGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACAGT
* * *
79746508 GGGGAAGCAGATTTAAACCATTAGTC-AATCACCCTAAGCAGTAGTGGTGTCGGTTGAAGATTAC
455 GGAGAAGCAGATTTAAACCATCAGTCTAATCACCCTAAGCAGTAGTGGCGTCGGTTGAAGATTAC
**
79746572 AGATTTTG
520 AGATACTG
* *
79746580 TCACCCTAAGAAGTAGTGGAGCAGATCGAAGATGGTGATTCTTATCTTCCCAACGCAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAA-GCAGTGGAGAA
** *
79746645 GTGGATTTAAGCCATTCGTCCTACCACCCTAAGCAGTAGTCGAGTAGGTTGAAGATAT-CAGATT
65 GCAGATTTAAGCCATTAGTCCTACCACCCTAAGCAGTAGTCGAGTAGGTTGAAGAT-TGCAGATT
* *
79746709 CTGCCACCGT-AAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCCTATCTTCCCAAAATAGTGG
129 CTGCCACC-TAAAGCAGTAGTGGAGCAGATCCAAGATGGTGAATCCTATCTTCCCAAAACAGTGG
* * *
79746773 AGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTTCAG
193 AGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAG
* * * ** *
79746838 ATTCTGCCACCCTGAGCAGTAGTGGA-GCAGATCGAATTTGGTGAATCTCATCTTCCAAATACAA
258 ATTCTACCACCCTAAGCAATAGT-GATGCAGATCGAAGATGGTGAATCTCATCTTCCAAACACAA
* * *
79746902 TGGAGAAGAAGATTTCAGCCATTAGTCCTATCACCCTAAGTAGTAGTGGAGTCAGTTGAAGATTA
322 TGGAGAAGAAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTCAGTTAAAGATTA
* * * *
79746967 CAGATTCTGTCACCCTAAGCAGTAGTCGA-GCAGATTGAAGATGGTGATTCTTATCTTCCCAACA
387 CAGATTCTATCACCCTAAGCAATAGT-GATGCAGATCGAAGATGGTGAATCTTATCTTCCCAACA
* * * * *
79747031 CAGTGGAGAAGCAGATTTGAGCCATCAGTCTTATCAGCCTAAGCAGTAGTGGCGTGGGTTGAAGA
451 CAGTGGAGAAGCAGATTTAAACCATCAGTCTAATCACCCTAAGCAGTAGTGGCGTCGGTTGAAGA
**
79747096 TTGGAGATACTG
516 TTACAGATACTG
* * * * * * * * * *
79747108 TCACTCTAAGCAGTAGTGGAGCGGATTGAAGATGGCGAATCATATCTTCTCAAGATAATGAAGTA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAG-CAGTGGAGAA
* * * * *
79747173 GCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTCGGTCGAAGATTGCAGATT
65 GCAGATTTAAGCCATTAGTCCTACCACCCTAAGCAGTAGTCGAGTAGGTTGAAGATTGCAGATT
79747237 TTTCACCCTC
Statistics
Matches: 570, Mismatches: 80, Indels: 13
0.86 0.12 0.02
Matches are distributed among these distances:
527 421 0.74
528 149 0.26
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.27
Consensus pattern (527 bp):
TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGCAGTGGAGAAG
CAGATTTAAGCCATTAGTCCTACCACCCTAAGCAGTAGTCGAGTAGGTTGAAGATTGCAGATTCT
GCCACCTAAAGCAGTAGTGGAGCAGATCCAAGATGGTGAATCCTATCTTCCCAAAACAGTGGAGA
AGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATT
CTACCACCCTAAGCAATAGTGATGCAGATCGAAGATGGTGAATCTCATCTTCCAAACACAATGGA
GAAGAAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTCAGTTAAAGATTACAGA
TTCTATCACCCTAAGCAATAGTGATGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACAGTG
GAGAAGCAGATTTAAACCATCAGTCTAATCACCCTAAGCAGTAGTGGCGTCGGTTGAAGATTACA
GATACTG
Found at i:79747409 original size:132 final size:132
Alignment explanation
Indices: 79747246--79748848 Score: 2241
Period size: 132 Copynumber: 12.2 Consensus size: 132
79747236 TTTTCACCCT
* * * ** * *
79747246 CCAATATAGTGGAGAAGCAGATTTAAGCCATTAGCCCAATTTCCATAAGGAGTAGTGGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
* * * **
79747311 TGAAGATTGCAGACTCTGTCACCTTAAGCAGAAGTGGAGTGGATCGAAGATGGTGAATCTTATCT
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
79747376 TC
131 TC
* * * *
79747378 CTAATATAGTGGAGAAGAAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
* * * * ** * *
79747443 TGAAGATTACAGATTCTGTCACCCTAAACAGTAGTGGGGCAGATCGAATATAATAAATCTTACCT
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
79747508 TC
131 TC
* * * *
79747510 CCAATATAGTGGAGAAGCAGATTGAAGCCATTAGT-CTGATCATCCTCAGCAGTAGTGGA-TCAG
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCT-ATCACCCTAAGCAGTAGTGGAGT-AG
* *
79747573 GTTGAAGATTGCAGATTCTGTGAACCTAAGCAGTAGTGGAGCAGATCGAATG-TGGTGAATCTTA
64 GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAA-GATGGTGAATCTTA
79747637 TCTTC
128 TCTTC
* * * * *
79747642 CCAATACAATGGAGAAGCAGATTTAAACCACTAGTCCTACCACCCTAAGCAGTAGTCGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
* *
79747707 TAAAGATTGTAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
79747772 TC
131 TC
* * *
79747774 TCAATACAGTGGAGAAGCAGA-TTAAGCCATTAGTCCTATCACCCTAAGTAGTAGTGGAGTTGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
79747838 TGAAGATAT-CAGATTCTGTCACCCTAAGCAGTAGTGGAGTC-GATCGAAGATGGTGAATCTTAT
66 TGAAGAT-TGCAGATTCTGTCACCCTAAGCAGTAGTGGAG-CAGATCGAAGATGGTGAATCTTAT
79747901 CTTC
129 CTTC
** *
79747905 CCAGCACAGTTGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
* *
79747970 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAATATGATGAATCTTATCT
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
79748035 TC
131 TC
* * *
79748037 CCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCTGTAGTGCAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
79748102 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
79748167 TC
131 TC
* * *
79748169 CCAAAACAGTGGAGAAGCAGATTTAAGCCATTAGTCCAATCA-CCTAAGCAGTAGTGGAGTCGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
* * * * *
79748233 CGAAGATTGCAGATT-TTTCACCCTAGGAAGTAGTGGAACAGATCGAAGATGGTGAATCTTATCT
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
79748297 TC
131 TC
* * * * * * * *
79748299 TCAAGAGAGTGCAGAAGCAGATTTAAGCAATTAGTCCTACCACCCTAAGGAGTGGTGGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
* * *
79748364 TGAAGATTGCAGATTCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATAGCGAATCTTATCT
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
79748429 TC
131 TC
* * *
79748431 CTAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCAAAGCAGTAGTGGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
* * *
79748496 TGAAGATTGCAGATTCTGTCAACCTAAGTAGTAGTGGAGCTGATCGAAGATGGTGAATCTTATCT
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
79748561 TC
131 TC
* * * * *
79748563 CCAATACAATGGAGAAACAGATTTAAACCATTAGTCCTACCACCCTAAGCAGTAGTCGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
* * * * *
79748628 TGAAGATTGTAGATTCTGTCACCCTAAGCAGTAGTGGAACAGATCGAATATGATGAATCTTACCT
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
79748693 TC
131 TC
* * ** *
79748695 CCAATACAGTTGAGAAGTAGATTTAAGTGATCAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
* * * * * * *
79748760 TGAAGATTACTGATTCTTTCACCCTAACCAGTAGTGGAGCAAATCGAAGATGGTGAATCCTATGT
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
79748825 TC
131 TC
*
79748827 CCAATACAGTGAAGAAGCAGAT
1 CCAATACAGTGGAGAAGCAGAT
79748849 GTGGAGCAGA
Statistics
Matches: 1296, Mismatches: 162, Indels: 26
0.87 0.11 0.02
Matches are distributed among these distances:
130 82 0.06
131 187 0.14
132 1024 0.79
133 3 0.00
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.27
Consensus pattern (132 bp):
CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
TC
Found at i:79747723 original size:264 final size:264
Alignment explanation
Indices: 79747246--79754127 Score: 7438
Period size: 264 Copynumber: 26.7 Consensus size: 264
79747236 TTTTCACCCT
* * * ** * *
79747246 CCAATATAGTGGAGAAGCAGATTTAAGCCATTAGCCCAATTTCCATAAGGAGTAGTGGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
* * * **
79747311 TGAAGATTGCAGACTCTGTCACCTTAAGCAGAAGTGGAGTGGATCGAAGATGGTGAATCTTATCT
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
* * * *
79747376 TCCTAATATAGTGGAGAAGAAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAG
131 TCCCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
* * * * ** * *
79747441 GTTGAAGATTACAGATTCTGTCACCCTAAACAGTAGTGGGGCAGATCGAATATAATAAATCTTAC
196 GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
79747506 CTTC
261 CTTC
* * * *
79747510 CCAATATAGTGGAGAAGCAGATTGAAGCCATTAGT-CTGATCATCCTCAGCAGTAGTGGA-TCAG
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCT-ATCACCCTAAGCAGTAGTGGAGT-AG
* *
79747573 GTTGAAGATTGCAGATTCTGTGAACCTAAGCAGTAGTGGAGCAGATCGAATG-TGGTGAATCTTA
64 GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAA-GATGGTGAATCTTA
* * * * * *
79747637 TCTTCCCAATACAATGGAGAAGCAGATTTAAACCACTAGTCCTACCACCCTAAGCAGTAGTCGAG
128 TCTTCCCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAG
* *
79747702 TAGGTTAAAGATTGTAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCT
193 TAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCT
79747767 TATCTTC
258 TATCTTC
* * *
79747774 TCAATACAGTGGAGAAGCAGA-TTAAGCCATTAGTCCTATCACCCTAAGTAGTAGTGGAGTTGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
79747838 TGAAGATAT-CAGATTCTGTCACCCTAAGCAGTAGTGGAGTC-GATCGAAGATGGTGAATCTTAT
66 TGAAGAT-TGCAGATTCTGTCACCCTAAGCAGTAGTGGAG-CAGATCGAAGATGGTGAATCTTAT
** * *
79747901 CTTCCCAGCACAGTTGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
129 CTTCCCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
* *
79747966 AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAATATGATGAATCTT
194 AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTT
79748031 ATCTTC
259 ATCTTC
* * *
79748037 CCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCTGTAGTGCAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
79748102 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
* * * *
79748167 TCCCAAAACAGTGGAGAAGCAGATTTAAGCCATTAGTCCAATCA-CCTAAGCAGTAGTGGAGTCG
131 TCCCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
* * * * *
79748231 GTCGAAGATTGCAGATT-TTTCACCCTAGGAAGTAGTGGAACAGATCGAAGATGGTGAATCTTAT
196 GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
79748295 CTTC
261 CTTC
* * * * * * * *
79748299 TCAAGAGAGTGCAGAAGCAGATTTAAGCAATTAGTCCTACCACCCTAAGGAGTGGTGGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
* * *
79748364 TGAAGATTGCAGATTCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATAGCGAATCTTATCT
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
* *
79748429 TCCTAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCAAAGCAGTAGTGGAGTAG
131 TCCCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
* * *
79748494 GTTGAAGATTGCAGATTCTGTCAACCTAAGTAGTAGTGGAGCTGATCGAAGATGGTGAATCTTAT
196 GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
79748559 CTTC
261 CTTC
* * * * *
79748563 CCAATACAATGGAGAAACAGATTTAAACCATTAGTCCTACCACCCTAAGCAGTAGTCGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
* * * * *
79748628 TGAAGATTGTAGATTCTGTCACCCTAAGCAGTAGTGGAACAGATCGAATATGATGAATCTTACCT
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
* ** *
79748693 TCCCAATACAGTTGAGAAGTAGATTTAAGTGATCAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
131 TCCCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
* * * * * *
79748758 GTTGAAGATTACTGATTCTTTCACCCTAACCAGTAGTGGAGCAAATCGAAGATGGTGAATCCTAT
196 GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
*
79748823 GTTC
261 CTTC
* * * * *
79748827 CCAATACAGTGAAGAAGCAGATGTGGAGCAGATCGAAGATGGTGAATCTTATGTTC-CCAATACA
1 CCAATACAGTGGAGAAGCAGAT-T-TA--AG--C---CAT--T-AGTCCTA---TCACC----C-
* * * * *
79748891 GTAAAGAAGCAGTTGTGGAGCAGATCGAAGATGGTG-A-ATCCTATGTTC-CCAATACAGTGAAG
46 -T----AAGCAGTAGTGGAGTAGGTTGAAGAT--TGCAGAT--TCTG-TCACC----C--T----
* * * * *
79748953 AAGCAGTTGTGGAGCAGATCGAAGATGGTGAATCCTATGTTCCCAATACAGTGAAGAAGCAG-TT
91 AAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGTAGATT
* * * ** * * * * * *
79749017 GTGGAGCAGATCGAAGATGGTGAATCTTATGTTCCCATTA-CAATAGAGAAGTAGATTTAAGCCA
156 -T--A--AG--C---CAT--T-AGTCCTAT-CACCC-TAAGCAGTAGTGGAGTAGGTTGAAG--A
* * * * * * ** * *
79749081 TT--AG-TCCTATCACCCTAAGCAGTAATGGAGTAGGTTGAAGATTGCAGATTC-TATC-AC
204 TTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGA-TGGTGAATCTTATCTTC
* * * * ** *** * * * * * * * * * *
79749138 CCTAA-GCAGTAGTGGAGCAGATCGAATATGATGAATCTTACCTTCCC-AATACAGCAGAGAAAT
1 CC-AATACAGTGGAGAAGCAGATTTAA-GCCATTAGTCCTATC-ACCCTAA-GCAGTAGTGGAGT
* * **** * * * * * ** *
79749201 AGATTTAAGCCACCAG-TCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTTATGATTCT
62 AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGA-TGGTGAATCT
* * * * * ** * ** *
79749265 T-TC-ACACTAAGCAATAGTGGAGCA--A-ATCGAAG--ATGGTGAATCCTATGTTCCC-AA-TA
126 TATCTTC-CCAA--TACAGTGGAGAAGTAGATTTAAGCCAT--T-AGTCCTAT-CACCCTAAGCA
* * * * ** *
79749321 -TAGTGGAGAAGCAGATTTAAGCCATT--A-CTCCTACCACTCTAAGCAGTAGTGGAGCAGATCG
184 GTAGTGGAGTAG--G-TTGAAG--ATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
79749382 AAGATGGTGAATCTTATCTTC
244 AAGATGGTGAATCTTATCTTC
*
79749403 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTTGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
* * * * *
79749468 TGAAGATTGCCGATTTTGTCACCCTAGGCAGTAGTGG-GTCAGATAGAAGTTGGTGAATCTTATC
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAG-CAGATCGAAGATGGTGAATCTTATC
* * * ** * *
79749532 TTCCCAACACGGTTGAGAAACAGATTTACGCCATTAGTCCTATCACCCTAAGCAGTAGTGGGGTA
130 TTCCCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTA
*
79749597 GGTTGAAGATTGCAGATTCTGTCACCGTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTA
195 GGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTA
79749662 TCTTC
260 TCTTC
** * * * * *
79749667 TGATTACAGTGGAGAAGTAGATTTAAGCCATTAGTGCAATCACCCTAAGCAGTAGTGGAGAAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
* * * *
79749732 TGAAGATTGCAGATTCTGTCACTCTAAGCAGTAGTGGAGCAAATCGAATATGATGAATCTTA-CA
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATC-
* * * *
79749796 TTCCCAGTACAGTGGAGAAGCAGATTGAAGCCATCAGT-CTAATCACCCTAAGCAGTAGTGGAGT
130 TTCCCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCT-ATCACCCTAAGCAGTAGTGGAGT
* * *
79749860 AGGTTGAAGATT-TATGATTCCT-TCACCCTAAGAAGTAGTGGAGCAAATCGAAGATGGTGAATC
194 AGGTTGAAGATTGCA-GATT-CTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATC
*
79749923 TTATGTTC
257 TTATCTTC
* * * * * *
79749931 CCAATACAGTGGAGAAGCAGATCTAAGCCTTTAGTCCTACCACCCCAAGCAGAAGTCGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
* ** * * * *
79749996 TGAAGATTGCAGATTTTGTCACCCTAAGCAGTAGTGGAATAGATCGAATATGGTTAATATTATTT
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
* * * *
79750061 TCCCAATACAGTGGAGAAGCAGATTTAAGCTATTAGTCCTATCACCCTAAGCAATAGTGGAGTCG
131 TCCCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
* * *
79750126 GTTGAAGATTGCAGATTCTGTCACCCTAAGGAGTAGT-GATGTAGATGGAAGATGGTGAATCTTA
196 GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGA-GCAGATCGAAGATGGTGAATCTTA
79750190 TCTTC
260 TCTTC
* * * **
79750195 CCAATACAGTGAAGAAGCAGATTTAAGCCATTAGTCCCATCTCCCTAAGCAGTAGCAGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
* * * * *
79750260 TAAAGATTGTAGATTCTGTCAGCCTAAGCAGTAGTGGAGTAGATCGAAGATGGTGATTCTTATCT
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
* * *
79750325 TCTCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCCATCACCCTAAGCAGTAGTGGAGTCG
131 TCCCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
* * * ** *
79750390 GTCGAAGATTACAGATT-TTTCACCCTAATAAGTAGTGGAGCAGATCGAAGATGGGGAATCTTAT
196 GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
79750454 CTTC
261 CTTC
* * * * * * *
79750458 TCAAGAGAGTGTAGAAGCAGATTTAAGCCATTAGTCCTA-CAACCCTAAGGAGTGGTGGACTAGG
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATC-ACCCTAAGCAGTAGTGGAGTAGG
*
79750522 TTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATAGTGAATCTTATC
65 TTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATC
* * *
79750587 TTCCTAATAAAGTGGAGAAGTAGATTTAAGCCAGTAGTCCTATCACCCTAAGCAGTAGTGGAGTA
130 TTCCCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTA
* * * * *
79750652 AGTT-AATGATTACAGATTCTGTCACCCTGAGCAGTAGTGGAGCAGATCGAATATGGTGAATCTC
195 GGTTGAA-GATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTT
79750716 ATCTT-
259 ATCTTC
* * *
79750721 CCAACTACAATGGAGAAGCAGATTTAAGCTATTAGTCTTATCACCCTAAGCAGTAGTGGAGTAGG
1 CCAA-TACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGG
*
79750786 TTGAAGATTGCAGATTCTGTCGCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATC
65 TTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATC
* * * * *
79750851 TACCCAGTAAAGTGGAGAAGCAGATTTAAGCCATCAGTCCTATCACCCTAAGCAGTAGTGGAGTA
130 TTCCCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTA
79750916 GGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTG-A----A
195 GGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTA
79750976 TC-T-
260 TCTTC
79750979 ----T--A-T-------CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
79751030 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTG-A----ATCT
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
79751090 T----AT-C-----------AGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
131 TCCCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
79751139 GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTG-A----AT
196 GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
79751199 C-T-
261 CTTC
79751201 ----T--A-T-------CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
79751252 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTG-A----ATCT
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
79751312 T----AT-C-----------AGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
131 TCCCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
79751361 GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTG-A----AT
196 GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
79751421 C-T-
261 CTTC
79751423 ----T--A-T-------CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
79751474 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTG-A----ATCT
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
79751534 T----AT-C-----------AGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
131 TCCCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
79751583 GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTG-A----AT
196 GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
79751643 C-T-
261 CTTC
79751645 ----T--A-T-------CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
79751696 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTG-A----ATCT
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
79751756 T----AT-C-----------AGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
131 TCCCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
79751805 GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTG-A----AT
196 GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
79751865 C-T-
261 CTTC
79751867 ----T--A-T-------CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
79751918 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTG-A----ATCT
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
79751978 T----AT-C-----------AGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
131 TCCCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
* **
79752027 GTTGAAGATTGCACATTCTGTCACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
196 GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
79752092 CTTC
261 CTTC
* * * * *
79752096 CCAACACGGTTGAGAAGTATATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
* **
79752161 TGAAGATTGCACATTCTGTCACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
* * * *
79752226 TCCCAACACGGTTGAGAAGTATATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
131 TCCCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
* **
79752291 GTTGAAGATTGCACATTCTGTCACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
196 GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
79752356 CTTC
261 CTTC
* * * * *
79752360 CCAACACGGTTGAGAAGTATATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
* **
79752425 TGAAGATTGCACATTCTGTCACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
* * * *
79752490 TCCCAACACGGTTGAGAAGTATATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
131 TCCCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
* **
79752555 GTTGAAGATTGCACATTCTGTCACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
196 GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
79752620 CTTC
261 CTTC
* * * * *
79752624 CCAACACGGTTGAGAAGTATATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
* **
79752689 TGAAGATTGCACATTCTGTCACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
* * * *
79752754 TCCCAACACGGTTGAGAAGTATATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
131 TCCCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
* **
79752819 GTTGAAGATTGCACATTCTGTCACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
196 GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
79752884 CTTC
261 CTTC
* * * * *
79752888 CCAACACGGTTGAGAAGTATATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
* **
79752953 TGAAGATTGCACATTCTGTCACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
* * * *
79753018 TCCCAACACGGTTGAGAAGTATATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
131 TCCCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
* **
79753083 GTTGAAGATTGCACATTCTGTCACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
196 GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
79753148 CTTC
261 CTTC
* * * * *
79753152 CCAACACGGTTGAGAAGTATATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
* **
79753217 TGAAGATTGCACATTCTGTCACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
* * * *
79753282 TCCCAACACGGTTGAGAAGTATATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
131 TCCCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
* **
79753347 GTTGAAGATTGCACATTCTGTCACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
196 GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
79753412 CTTC
261 CTTC
* * * * *
79753416 CCAACACGGTTGAGAAGTATATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
* **
79753481 TGAAGATTGCACATTCTGTCACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
* * * * *
79753546 TCCCAACACGGTTGAGAAGTATATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTCG
131 TCCCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
* * * *
79753611 GTTGAAGATTGCAGATTTTGTCACCCTAAGAAGTAGTGGAGCAGATTGAAGATGGTGATTCTTAT
196 GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
79753676 CTTC
261 CTTC
* ** * * * * *
79753680 CCAACACAGTGGAGAAGTGGATTGAAGCCATTCGTCCTACCACCCTAAACAGTAGTCGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
79753745 TGAAGATAT-CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTG------A--
66 TGAAGAT-TGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATC
* *
79753801 TTCCCAAAACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTA
130 TTCCCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTA
* * * * * * *
79753866 GGTTAAAGATTTCAGACTCTGTCATCCTGAGCAGTAGTGGAGCAGATC-AATTATGGTGAATCTC
195 GGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAA-GATGGTGAATCTT
*
79753930 GTCTTC
259 ATCTTC
* * *
79753936 CCAATACAGTAGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTTGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
* *
79754001 TGAAGATTGCAGATTCTGTCGCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATGT
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
* * * * * *
79754066 TCCCAATACAGTGGAGAAGCAGATCTAAGCCTTTAGTGCTACCACACTAAG-ATGTAGTGGAG
131 TCCCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCA-GTAGTGGAG
79754128 CAGATCGAAG
Statistics
Matches: 5907, Mismatches: 533, Indels: 356
0.87 0.08 0.05
Matches are distributed among these distances:
222 986 0.17
223 1 0.00
227 3 0.00
228 1 0.00
234 1 0.00
236 1 0.00
238 4 0.00
242 1 0.00
243 198 0.03
244 1 0.00
248 5 0.00
250 1 0.00
251 1 0.00
252 1 0.00
253 2 0.00
255 3 0.00
256 222 0.04
258 2 0.00
259 3 0.00
261 11 0.00
262 215 0.04
263 584 0.10
264 3327 0.56
265 37 0.01
266 10 0.00
267 2 0.00
268 1 0.00
270 1 0.00
271 2 0.00
273 3 0.00
275 2 0.00
276 32 0.01
277 7 0.00
278 10 0.00
279 1 0.00
280 1 0.00
282 2 0.00
284 1 0.00
285 2 0.00
286 3 0.00
288 27 0.00
289 14 0.00
290 7 0.00
291 2 0.00
294 1 0.00
295 1 0.00
296 1 0.00
297 1 0.00
299 4 0.00
300 60 0.01
302 1 0.00
303 3 0.00
304 2 0.00
307 1 0.00
309 5 0.00
311 15 0.00
312 40 0.01
313 26 0.00
314 2 0.00
315 3 0.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (264 bp):
CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
TCCCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
CTTC
Found at i:79747757 original size:44 final size:44
Alignment explanation
Indices: 79747682--79748671 Score: 203
Period size: 44 Copynumber: 22.6 Consensus size: 44
79747672 CTAGTCCTAC
* * * * *
79747682 CACCCTAAGCAGTAGTCGAGTAGGTTAAAGATTGTAGATTCTGT
1 CACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATTCTAT
* * *
79747726 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGT-GAATCTTAT
1 CACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATTC-TAT
** * * * * *
79747770 C-TTCTCAATACAGTGGAGAAGCAGATT-AAGCCA-T-TAG-TCCTAT
1 CACCCT-AA-GCAGTAGTGGAGCAGATTGAAG--ATTGTAGATTCTAT
* ** * * *
79747813 CACCCTAAGTAGTAGTGGAGTTGGTTGAAGATAT-CAGATTCTGT
1 CACCCTAAGCAGTAGTGGAGCAGATTGAAGAT-TGTAGATTCTAT
* * *
79747857 CACCCTAAGCAGTAGTGGAGTC-GATCGAAGATGGT-GAATCTTAT
1 CACCCTAAGCAGTAGTGGAG-CAGATTGAAGATTGTAGATTC-TAT
* * * *
79747901 CTTCCC--AGCA-CAGTTGAGAAGCAGATTTAAGCCA-T-TAG-TCCTAT
1 C-ACCCTAAGCAGTAG-TG-G-AGCAGATTGAAG--ATTGTAGATTCTAT
* * * *
79747945 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGT
1 CACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATTCTAT
* * *
79747989 CACCCTAAGCAGTAGTGGAGCAGATCGAATA-TG-ATGAATCTTAT
1 CACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTA-GATTC-TAT
* * * * * * * *
79748033 CTTCCC-AATACAGTGGAGAAGTAGATTTAAGCCA-T-TAG-TCCTAT
1 C-ACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGTAGATTCTAT
* * * * * *
79748077 CACCCTAAGCTGTAGTGCAGTAGGTTGAAGATTGCAGATTCTGT
1 CACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATTCTAT
* * *
79748121 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGT-GAATCTTAT
1 CACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATTC-TAT
* * * * * * * * *
79748165 CTTCCCAAAACAGTGGAGAAGCAGATTTAAGCCA-T-TAG-TCCAAT
1 C-ACCCTAAGCAGTAGTGGAGCAGATTGAAG--ATTGTAGATTCTAT
* * * *
79748209 CA-CCTAAGCAGTAGTGGAGTC-GGTCGAAGATTGCAGATT-TTT
1 CACCCTAAGCAGTAGTGGAG-CAGATTGAAGATTGTAGATTCTAT
* * * * * *
79748251 CACCCTAGGAAGTAGTGGAACAGATCGAAGATGGT-GAATCTTAT
1 CACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATTC-TAT
** * * * *
79748295 C-TTCTCAAG-AG-AGTGCAGAAGCAGATTTAAGCAAT-TAG-TCCTAC
1 CACCCT-AAGCAGTAGTG--G-AGCAGATTGAAG-ATTGTAGATTCTAT
* * * * * *
79748339 CACCCTAAGGAGTGGTGGAGTAGGTTGAAGATTGCAGATTCTGT
1 CACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATTCTAT
* * * * *
79748383 CACCTTAAGCAGTAGTGGAGCAGATCGAAGATAG-CGAATCTTAT
1 CACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATTC-TAT
** * * * * * * *
79748427 CTTCCTAATACAGTGGAGAAGTAGATTTAAGCCA-T-TAG-TCCTAT
1 CACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGTAGATTCTAT
* * * * *
79748471 CACCCAAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGT
1 CACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATTCTAT
* * * * * *
79748515 CAACCTAAGTAGTAGTGGAGCTGATCGAAGATGGT-GAATCTTAT
1 CACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATTC-TAT
* * * * * * * * * * *
79748559 CTTCCC-AATACAATGGAGAAACAGATTTAA-ACCAT-TAG-TCCTAC
1 C-ACCCTAA-GCAGTAGTGGAGCAGATTGAAGA--TTGTAGATTCTAT
* * * *
79748603 CACCCTAAGCAGTAGTCGAGTAGGTTGAAGATTGTAGATTCTGT
1 CACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATTCTAT
*
79748647 CACCCTAAGCAGTAGTGGAACAGAT
1 CACCCTAAGCAGTAGTGGAGCAGAT
79748672 CGAATATGAT
Statistics
Matches: 636, Mismatches: 229, Indels: 162
0.62 0.22 0.16
Matches are distributed among these distances:
40 1 0.00
41 5 0.01
42 49 0.08
43 156 0.25
44 286 0.45
45 120 0.19
46 13 0.02
47 6 0.01
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.26
Consensus pattern (44 bp):
CACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATTCTAT
Found at i:79749067 original size:56 final size:56
Alignment explanation
Indices: 79748788--79749058 Score: 479
Period size: 56 Copynumber: 4.8 Consensus size: 56
79748778 TCACCCTAAC
* *
79748788 CAGTAGTGGAGCAAATCGAAGATGGTGAATCCTATGTTCCCAATACAGTGAAGAAG
1 CAGTTGTGGAGCAGATCGAAGATGGTGAATCCTATGTTCCCAATACAGTGAAGAAG
* * *
79748844 CAGATGTGGAGCAGATCGAAGATGGTGAATCTTATGTTCCCAATACAGTAAAGAAG
1 CAGTTGTGGAGCAGATCGAAGATGGTGAATCCTATGTTCCCAATACAGTGAAGAAG
79748900 CAGTTGTGGAGCAGATCGAAGATGGTGAATCCTATGTTCCCAATACAGTGAAGAAG
1 CAGTTGTGGAGCAGATCGAAGATGGTGAATCCTATGTTCCCAATACAGTGAAGAAG
79748956 CAGTTGTGGAGCAGATCGAAGATGGTGAATCCTATGTTCCCAATACAGTGAAGAAG
1 CAGTTGTGGAGCAGATCGAAGATGGTGAATCCTATGTTCCCAATACAGTGAAGAAG
* *
79749012 CAGTTGTGGAGCAGATCGAAGATGGTGAATCTTATGTTCCCATTACA
1 CAGTTGTGGAGCAGATCGAAGATGGTGAATCCTATGTTCCCAATACA
79749059 ATAGAGAAGT
Statistics
Matches: 205, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 205 1.00
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.24
Consensus pattern (56 bp):
CAGTTGTGGAGCAGATCGAAGATGGTGAATCCTATGTTCCCAATACAGTGAAGAAG
Found at i:79749246 original size:132 final size:132
Alignment explanation
Indices: 79749009--79749374 Score: 500
Period size: 132 Copynumber: 2.8 Consensus size: 132
79748999 TACAGTGAAG
* * *
79749009 AAGCAGTTGTGGAGCAGATCGAAGATGGTGAATCTTATGTTCCCATTACAATAGAGAAGTAGATT
1 AAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATGTTCCCAATACAGTAGAGAAGTAGATT
*
79749074 TAAGCCATTAGTCCTATCACCCTAAGCAGTAATGGAGTAGGTTGAAGATTGCA-GATTCTATCAC
66 TAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATT-CATGATTCTATCAC
*
79749138 CCT
130 ACT
* * ** * *
79749141 AAGCAGTAGTGGAGCAGATCGAATATGATGAATCTTACCTTCCCAATACAGCAGAGAAATAGATT
1 AAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATGTTCCCAATACAGTAGAGAAGTAGATT
** * *
79749206 TAAGCCACCAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTTATGATTCTTTCACA
66 TAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTCATGATTCTATCACA
79749271 CT
131 CT
* * * * * *
79749273 AAGCAATAGTGGAGCAAATCGAAGATGGTGAATCCTATGTTCCCAATATAGTGGAGAAGCAGATT
1 AAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATGTTCCCAATACAGTAGAGAAGTAGATT
* * *
79749338 TAAGCCATTACTCCTACCACTCTAAGCAGTAGTGGAG
66 TAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAG
79749375 CAGATCGAAG
Statistics
Matches: 201, Mismatches: 32, Indels: 2
0.86 0.14 0.01
Matches are distributed among these distances:
131 1 0.00
132 200 1.00
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (132 bp):
AAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATGTTCCCAATACAGTAGAGAAGTAGATT
TAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTCATGATTCTATCACA
CT
Found at i:79749431 original size:220 final size:220
Alignment explanation
Indices: 79749135--79749592 Score: 614
Period size: 220 Copynumber: 2.1 Consensus size: 220
79749125 CAGATTCTAT
*
79749135 CACCCTAAGCAGTAGTGGAGCAGATCGAATATGATGAATCTTACCTTCCCAATACAGCAGAGAAA
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAATCTTACCTTCCCAATACAGCAGAGAAA
* * *
79749200 TAGATTTAAGCCACCAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTTATGATTCT
66 CAGATTTAAGCCACCAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGACGATT-T
* * * *
79749265 T-TCACACTAAGCAATAGTGGAG-CAAATCGAAGATGGTGAATCCTATGTTCCCAATATAGTGGA
130 TGTCACACTAAGCAATAGTGG-GTCAAATAGAAGATGGTGAATCCTATCTTCCCAACACAGTGGA
*
79749328 GAAGCAGATTTAAGCCATTACTCCTAC
194 GAAACAGATTTAAGCCATTACTCCTAC
* * * ** *
79749355 CACTCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAATCTTACCTTCCCAATACAGCAGAGAAA
** * *
79749420 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTTGGTTGAAGATTGCCGATTTT
66 CAGATTTAAGCCACCAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGACGATTTT
* * * * * * * *
79749485 GTCACCCTAGGCAGTAGTGGGTCAGATAGAAGTTGGTGAATCTTATCTTCCCAACACGGTTGAGA
131 GTCACACTAAGCAATAGTGGGTCAAATAGAAGATGGTGAATCCTATCTTCCCAACACAGTGGAGA
* * *
79749550 AACAGATTTACGCCATTAGTCCTAT
196 AACAGATTTAAGCCATTACTCCTAC
79749575 CACCCTAAGCAGTAGTGG
1 CACCCTAAGCAGTAGTGG
79749593 GGTAGGTTGA
Statistics
Matches: 205, Mismatches: 31, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
219 3 0.01
220 202 0.99
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.26
Consensus pattern (220 bp):
CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAATCTTACCTTCCCAATACAGCAGAGAAA
CAGATTTAAGCCACCAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGACGATTTT
GTCACACTAAGCAATAGTGGGTCAAATAGAAGATGGTGAATCCTATCTTCCCAACACAGTGGAGA
AACAGATTTAAGCCATTACTCCTAC
Found at i:79749441 original size:132 final size:131
Alignment explanation
Indices: 79749359--79750982 Score: 2159
Period size: 132 Copynumber: 12.3 Consensus size: 131
79749349 TCCTACCACT
79749359 CTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGA
1 CTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGA
* * *
79749424 TTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTTGGTTGAAGATTGCCGATTTTGTCA
66 TTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG-AGATTCTGTCA
79749489 CC
130 CC
* * * * * * *
79749491 CTAGGCAGTAGTGG-GTCAGATAGAAGTTGGTGAATCTTATCTTCCCAACACGGTTGAGAAACAG
1 CTAAGCAGTAGTGGAG-CAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAG
* *
79749555 ATTTACGCCATTAGTCCTATCACCCTAAGCAGTAGTGGGGTAGGTTGAAGATTGCAGATTCTGTC
65 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG-AGATTCTGTC
79749620 ACC
129 ACC
* ** * *
79749623 GTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCTGATTACAGTGGAGAAGTAGA
1 CTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGA
* * *
79749688 TTTAAGCCATTAGTGCAATCACCCTAAGCAGTAGTGGAGAAGGTTGAAGATTGCAGATTCTGTCA
66 TTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG-AGATTCTGTCA
*
79749753 CT
130 CC
* * * *
79749755 CTAAGCAGTAGTGGAGCAAATCGAATATGATGAATCTTA-CATTCCCAGTACAGTGGAGAAGCAG
1 CTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATC-TTCCCAATACAGTGGAGAAGCAG
* * *
79749819 ATTGAAGCCATCAGT-CTAATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTTATGATTCCT-
65 ATTTAAGCCATTAGTCCT-ATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGA-GATT-CTG
79749882 TCACC
127 TCACC
* * *
79749887 CTAAGAAGTAGTGGAGCAAATCGAAGATGGTGAATCTTATGTTCCCAATACAGTGGAGAAGCAGA
1 CTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGA
* * * * * * *
79749952 TCTAAGCCTTTAGTCCTACCACCCCAAGCAGAAGTCGAGTAGGTTGAAGATTGCAGATTTTGTCA
66 TTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG-AGATTCTGTCA
79750017 CC
130 CC
** * * * *
79750019 CTAAGCAGTAGTGGAATAGATCGAATATGGTTAATATTATTTTCCCAATACAGTGGAGAAGCAGA
1 CTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGA
* * *
79750084 TTTAAGCTATTAGTCCTATCACCCTAAGCAATAGTGGAGTCGGTTGAAGATTGCAGATTCTGTCA
66 TTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG-AGATTCTGTCA
79750149 CC
130 CC
* * * *
79750151 CTAAGGAGTAGT-GATGTAGATGGAAGATGGTGAATCTTATCTTCCCAATACAGTGAAGAAGCAG
1 CTAAGCAGTAGTGGA-GCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAG
* * ** *
79750215 ATTTAAGCCATTAGTCCCATCTCCCTAAGCAGTAGCAGAGTAGGTTAAAGATTGTAGATTCTGTC
65 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG-AGATTCTGTC
*
79750280 AGC
129 ACC
* * * *
79750283 CTAAGCAGTAGTGGAGTAGATCGAAGATGGTGATTCTTATCTTCTCAATACAGTGGAGAAGTAGA
1 CTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGA
* * * * *
79750348 TTTAAGCCATTAGTCCCATCACCCTAAGCAGTAGTGGAGTCGGTCGAAGATTACAGATT-TTTCA
66 TTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATT-GAGATTCTGTCA
79750412 CC
130 CC
** * * * * *
79750414 CTAATAAGTAGTGGAGCAGATCGAAGATGGGGAATCTTATCTTCTCAAGAGAGTGTAGAAGCAGA
1 CTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGA
* * *
79750479 TTTAAGCCATTAGTCCTA-CAACCCTAAGGAGTGGTGGACTAGGTTGAAGATTGCAGATTCTGTC
66 TTTAAGCCATTAGTCCTATC-ACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG-AGATTCTGTC
79750543 ACC
129 ACC
* * * *
79750546 CTAAGCAGTAGTGGAGCAGATCGAAGATAGTGAATCTTATCTTCCTAATAAAGTGGAGAAGTAGA
1 CTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGA
* * *
79750611 TTTAAGCCAGTAGTCCTATCACCCTAAGCAGTAGTGGAGTAAGTT-AATGATTACAGATTCTGTC
66 TTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAA-GATT-GAGATTCTGTC
79750675 ACC
129 ACC
* * * *
79750678 CTGAGCAGTAGTGGAGCAGATCGAATATGGTGAATCTCATCTT-CCAACTACAATGGAGAAGCAG
1 CTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAA-TACAGTGGAGAAGCAG
* *
79750742 ATTTAAGCTATTAGTCTTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTC
65 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG-AGATTCTGTC
*
79750807 GCC
129 ACC
* * *
79750810 CTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTACCCAGTAAAGTGGAGAAGCAGA
1 CTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGA
*
79750875 TTTAAGCCATCAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCA
66 TTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG-AGATTCTGTCA
79750940 CC
130 CC
79750942 CTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATC
1 CTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATC
79750983 AGATTTAAGC
Statistics
Matches: 1301, Mismatches: 168, Indels: 46
0.86 0.11 0.03
Matches are distributed among these distances:
130 1 0.00
131 122 0.09
132 1164 0.89
133 14 0.01
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.27
Consensus pattern (131 bp):
CTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGA
TTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGAGATTCTGTCAC
C
Found at i:79749474 original size:88 final size:88
Alignment explanation
Indices: 79749271--79749462 Score: 312
Period size: 88 Copynumber: 2.2 Consensus size: 88
79749261 TTCTTTCACA
* * * *
79749271 CTAAGCAATAGTGGAGCAAATCGAAGATGGTGAATCCTATGTTCCCAATATAGTGGAGAAGCAGA
1 CTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCCTATCTTCCCAATACAGTGGAGAAGCAGA
*
79749336 TTTAAGCCATTACTCCTACCACT
66 TTTAAGCCATTACTCCTACCACC
*
79749359 CTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGA
1 CTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCCTATCTTCCCAATACAGTGGAGAAGCAGA
* *
79749424 TTTAAGCCATTAGTCCTATCACC
66 TTTAAGCCATTACTCCTACCACC
79749447 CTAAGCAGTAGTGGAG
1 CTAAGCAGTAGTGGAG
79749463 TTGGTTGAAG
Statistics
Matches: 96, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
88 96 1.00
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.24
Consensus pattern (88 bp):
CTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCCTATCTTCCCAATACAGTGGAGAAGCAGA
TTTAAGCCATTACTCCTACCACC
Found at i:79749888 original size:396 final size:396
Alignment explanation
Indices: 79747246--79754127 Score: 7463
Period size: 396 Copynumber: 17.8 Consensus size: 396
79747236 TTTTCACCCT
* * * ** * *
79747246 CCAATATAGTGGAGAAGCAGATTTAAGCCATTAGCCCAATTTCCATAAGGAGTAGTGGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
* * * **
79747311 TGAAGATTGCAGACTCTGTCACCTTAAGCAGAAGTGGAGTGGATCGAAGATGGTGAATCTTATCT
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
* * * *
79747376 TCCTAATATAGTGGAGAAGAAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAG
131 TCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
* * * * ** * *
79747441 GTTGAAGATTACAGATTCTGTCACCCTAAACAGTAGTGGGGCAGATCGAATATAATAAATCTTAC
196 GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
* * * * * *
79747506 CTTCCCAATATAGTGGAGAAGCAGATTGAAGCCATTAGT-CTGATCATCCTCAGCAGTAGTGGA-
261 CTTCCCAACACAGTTGAGAAGCAGATTTAAGCCATTAGTCCT-ATCACCCTAAGCAGTAGTGGAG
* *
79747569 TCAGGTTGAAGATTGCAGATTCTGTGAACCTAAGCAGTAGTGGAGCAGATCGAATG-TGGTGAAT
325 T-AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAA-GATGGTGAAT
79747633 CTTATCTTC
388 CTTATCTTC
* * * * *
79747642 CCAATACAATGGAGAAGCAGATTTAAACCACTAGTCCTACCACCCTAAGCAGTAGTCGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
* *
79747707 TAAAGATTGTAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
* * *
79747772 TCTCAATACAGTGGAGAAGCAGA-TTAAGCCATTAGTCCTATCACCCTAAGTAGTAGTGGAGTTG
131 TCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
79747836 GTTGAAGATAT-CAGATTCTGTCACCCTAAGCAGTAGTGGAGTC-GATCGAAGATGGTGAATCTT
196 GTTGAAGAT-TGCAGATTCTGTCACCCTAAGCAGTAGTGGAG-CAGATCGAAGATGGTGAATCTT
*
79747899 ATCTTCCCAGCACAGTTGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGA
259 ATCTTCCCAACACAGTTGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGA
* *
79747964 GTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAATATGATGAATC
324 GTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATC
79748029 TTATCTTC
389 TTATCTTC
* * *
79748037 CCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCTGTAGTGCAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
79748102 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
* * *
79748167 TCCCAAAACAGTGGAGAAGCAGATTTAAGCCATTAGTCCAATCA-CCTAAGCAGTAGTGGAGTCG
131 TCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
* * * * *
79748231 GTCGAAGATTGCAGATT-TTTCACCCTAGGAAGTAGTGGAACAGATCGAAGATGGTGAATCTTAT
196 GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
* * * * * * *
79748295 CTTCTCAAGAGAG-TGCAGAAGCAGATTTAAGCAATTAGTCCTACCACCCTAAGGAGTGGTGGAG
261 CTTCCCAACACAGTTG-AGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAG
* * *
79748359 TAGGTTGAAGATTGCAGATTCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATAGCGAATCT
325 TAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCT
79748424 TATCTTC
390 TATCTTC
* * *
79748431 CTAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCAAAGCAGTAGTGGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
* * *
79748496 TGAAGATTGCAGATTCTGTCAACCTAAGTAGTAGTGGAGCTGATCGAAGATGGTGAATCTTATCT
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
* * * * *
79748561 TCCCAATACAATGGAGAAACAGATTTAAACCATTAGTCCTACCACCCTAAGCAGTAGTCGAGTAG
131 TCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
* * * * *
79748626 GTTGAAGATTGTAGATTCTGTCACCCTAAGCAGTAGTGGAACAGATCGAATATGATGAATCTTAC
196 GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
* * ** *
79748691 CTTCCCAATACAGTTGAGAAGTAGATTTAAGTGATCAGTCCTATCACCCTAAGCAGTAGTGGAGT
261 CTTCCCAACACAGTTGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
* * * * * *
79748756 AGGTTGAAGATTACTGATTCTTTCACCCTAACCAGTAGTGGAGCAAATCGAAGATGGTGAATCCT
326 AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTT
*
79748821 ATGTTC
391 ATCTTC
* * * * *
79748827 CCAATACAGTGAAGAAGCAGATGTGGAGCAGATCGAAGATGGTGAATCTTATGTTC-CCAATACA
1 CCAATACAGTGGAGAAGCAGAT-T-TA--AG--C---CAT--T-AGTCCTA---TCACC----C-
* * * * *
79748891 GTAAAGAAGCAGTTGTGGAGCAGATCGAAGATGGTG-A-ATCCTATGTTC-CCAATACAGTGAAG
46 -T----AAGCAGTAGTGGAGTAGGTTGAAGAT--TGCAGAT--TCTG-TCACC----C--T----
* * * *
79748953 AAGCAGTTGTGGAGCAGATCGAAGATGGTGAATCCTATGTTCCCAATACAGTGAAGAAGCAG-TT
91 AAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATT
* * * ** * * * * * *
79749017 GTGGAGCAGATCGAAGATGGTGAATCTTATGTTCCCATTA-CAATAGAGAAGTAGATTTAAGCCA
156 -T--A--AG--C---CAT--T-AGTCCTAT-CACCC-TAAGCAGTAGTGGAGTAGGTTGAAG--A
* * * * * * ** * *
79749081 TT--AG-TCCTATCACCCTAAGCAGTAATGGAGTAGGTTGAAGATTGCAGATTC-TATC-ACCCT
204 TTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGA-TGGTGAATCTTATCTTCCC-
* * * * ** *** * * * * * * * * * * *
79749141 AA-GCAGTAGTGGAGCAGATCGAATATGATGAATCTTACCTTCCC-AATACAGCAGAGAAATAGA
267 AACACAGTTGAGAAGCAGATTTAA-GCCATTAGTCCTATC-ACCCTAA-GCAGTAGTGGAGTAGG
* **** * * * * * ** *
79749204 TTTAAGCCACCAG-TCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTTATGATTCTT-T
329 TTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGA-TGGTGAATCTTAT
*
79749267 C-AC
393 CTTC
* * * * * * * ** * ** *
79749270 ACTAA-GCAATAGTGGAGCAAATCGAAG--ATGGTGAATCCTATGTTCCC-AA-TA-TAGTGGAG
1 -CCAATACAGTGGAGAAGCAGATTTAAGCCAT--T-AGTCCTAT-CACCCTAAGCAGTAGTGGAG
* * * * ** *
79749329 AAGCAGATTTAAGCCATT--A-CTCCTACCACTCTAAGCAGTAGTGGAGCAGATCGAAGATGGTG
61 TAG--G-TTGAAG--ATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTG
79749391 AATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGT
121 AATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGT
* * * * * *
79749456 AGTGGAGTTGGTTGAAGATTGCCGATTTTGTCACCCTAGGCAGTAGTGG-GTCAGATAGAAGTTG
186 AGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAG-CAGATCGAAGATG
* * *
79749520 GTGAATCTTATCTTCCCAACACGGTTGAGAAACAGATTTACGCCATTAGTCCTATCACCCTAAGC
250 GTGAATCTTATCTTCCCAACACAGTTGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGC
* *
79749585 AGTAGTGGGGTAGGTTGAAGATTGCAGATTCTGTCACCGTAAGCAGTAGTGGAGCAGATCGAAGA
315 AGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGA
79749650 TGGTGAATCTTATCTTC
380 TGGTGAATCTTATCTTC
** * * * * *
79749667 TGATTACAGTGGAGAAGTAGATTTAAGCCATTAGTGCAATCACCCTAAGCAGTAGTGGAGAAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
* * * *
79749732 TGAAGATTGCAGATTCTGTCACTCTAAGCAGTAGTGGAGCAAATCGAATATGATGAATCTTA-CA
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATC-
* * *
79749796 TTCCCAGTACAGTGGAGAAGCAGATTGAAGCCATCAGT-CTAATCACCCTAAGCAGTAGTGGAGT
130 TTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCT-ATCACCCTAAGCAGTAGTGGAGT
* * *
79749860 AGGTTGAAGATT-TATGATTCCT-TCACCCTAAGAAGTAGTGGAGCAAATCGAAGATGGTGAATC
194 AGGTTGAAGATTGCA-GATT-CTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATC
* * * * * * * * *
79749923 TTATGTTCCCAATACAGTGGAGAAGCAGATCTAAGCCTTTAGTCCTACCACCCCAAGCAGAAGTC
257 TTATCTTCCCAACACAGTTGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTG
* ** * *
79749988 GAGTAGGTTGAAGATTGCAGATTTTGTCACCCTAAGCAGTAGTGGAATAGATCGAATATGGTTAA
322 GAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAA
* *
79750053 TATTATTTTC
387 TCTTATCTTC
* * *
79750063 CCAATACAGTGGAGAAGCAGATTTAAGCTATTAGTCCTATCACCCTAAGCAATAGTGGAGTCGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
* * *
79750128 TGAAGATTGCAGATTCTGTCACCCTAAGGAGTAGT-GATGTAGATGGAAGATGGTGAATCTTATC
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGA-GCAGATCGAAGATGGTGAATCTTATC
* * * **
79750192 TTCCCAATACAGTGAAGAAGCAGATTTAAGCCATTAGTCCCATCTCCCTAAGCAGTAGCAGAGTA
130 TTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTA
* * * * *
79750257 GGTTAAAGATTGTAGATTCTGTCAGCCTAAGCAGTAGTGGAGTAGATCGAAGATGGTGATTCTTA
195 GGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTA
* * * * *
79750322 TCTTCTCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCCATCACCCTAAGCAGTAGTGGAG
260 TCTTCCCAACACAGTTGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAG
* * * * ** *
79750387 TCGGTCGAAGATTACAGATT-TTTCACCCTAATAAGTAGTGGAGCAGATCGAAGATGGGGAATCT
325 TAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCT
79750451 TATCTTC
390 TATCTTC
* * * * * * *
79750458 TCAAGAGAGTGTAGAAGCAGATTTAAGCCATTAGTCCTA-CAACCCTAAGGAGTGGTGGACTAGG
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATC-ACCCTAAGCAGTAGTGGAGTAGG
*
79750522 TTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATAGTGAATCTTATC
65 TTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATC
* * * *
79750587 TTCCTAATAAAGTGGAGAAGTAGATTTAAGCCAGTAGTCCTATCACCCTAAGCAGTAGTGGAGTA
130 TTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTA
* * * * *
79750652 AGTT-AATGATTACAGATTCTGTCACCCTGAGCAGTAGTGGAGCAGATCGAATATGGTGAATCTC
195 GGTTGAA-GATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTT
* * * *
79750716 ATCTT-CCAACTACAATGGAGAAGCAGATTTAAGCTATTAGTCTTATCACCCTAAGCAGTAGTGG
259 ATCTTCCCAAC-ACAGTTGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGG
*
79750780 AGTAGGTTGAAGATTGCAGATTCTGTCGCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
323 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
*
79750845 CTTATCTAC
388 CTTATCTTC
* * *
79750854 CCAGTAAAGTGGAGAAGCAGATTTAAGCCATCAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
79750919 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTG-A----ATC-
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
79750978 T-----T--A-T-------CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
131 TCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
79751028 GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTG-A----AT
196 GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
79751088 CTT--------A--T------CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
261 CTTCCCAACACAGTTGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
79751137 AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTG-A----
326 AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTT
79751197 ATC-T-
391 ATCTTC
79751201 ----T--A-T-------CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
79751252 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTG-A----ATC-
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
79751311 T-----T--A-T-------CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
131 TCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
79751361 GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTG-A----AT
196 GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
79751421 CTT--------A--T------CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
261 CTTCCCAACACAGTTGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
79751470 AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTG-A----
326 AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTT
79751530 ATC-T-
391 ATCTTC
79751534 ----T--A-T-------CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
79751585 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTG-A----ATC-
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
79751644 T-----T--A-T-------CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
131 TCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
79751694 GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTG-A----AT
196 GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
79751754 CTT--------A--T------CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
261 CTTCCCAACACAGTTGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
79751803 AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTG-A----
326 AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTT
79751863 ATC-T-
391 ATCTTC
79751867 ----T--A-T-------CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
79751918 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTG-A----ATC-
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
79751977 T-----T--A-T-------CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
131 TCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
* **
79752027 GTTGAAGATTGCACATTCTGTCACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
196 GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
* * *
79752092 CTTCCCAACACGGTTGAGAAGTATATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
261 CTTCCCAACACAGTTGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
* **
79752157 AGGTTGAAGATTGCACATTCTGTCACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTT
326 AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTT
79752222 ATCTTC
391 ATCTTC
* * * * *
79752228 CCAACACGGTTGAGAAGTATATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
* **
79752293 TGAAGATTGCACATTCTGTCACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
* * * * *
79752358 TCCCAACACGGTTGAGAAGTATATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
131 TCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
* **
79752423 GTTGAAGATTGCACATTCTGTCACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
196 GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
* * *
79752488 CTTCCCAACACGGTTGAGAAGTATATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
261 CTTCCCAACACAGTTGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
* **
79752553 AGGTTGAAGATTGCACATTCTGTCACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTT
326 AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTT
79752618 ATCTTC
391 ATCTTC
* * * * *
79752624 CCAACACGGTTGAGAAGTATATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
* **
79752689 TGAAGATTGCACATTCTGTCACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
* * * * *
79752754 TCCCAACACGGTTGAGAAGTATATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
131 TCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
* **
79752819 GTTGAAGATTGCACATTCTGTCACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
196 GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
* * *
79752884 CTTCCCAACACGGTTGAGAAGTATATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
261 CTTCCCAACACAGTTGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
* **
79752949 AGGTTGAAGATTGCACATTCTGTCACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTT
326 AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTT
79753014 ATCTTC
391 ATCTTC
* * * * *
79753020 CCAACACGGTTGAGAAGTATATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
* **
79753085 TGAAGATTGCACATTCTGTCACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
* * * * *
79753150 TCCCAACACGGTTGAGAAGTATATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
131 TCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
* **
79753215 GTTGAAGATTGCACATTCTGTCACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
196 GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
* * *
79753280 CTTCCCAACACGGTTGAGAAGTATATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
261 CTTCCCAACACAGTTGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
* **
79753345 AGGTTGAAGATTGCACATTCTGTCACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTT
326 AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTT
79753410 ATCTTC
391 ATCTTC
* * * * *
79753416 CCAACACGGTTGAGAAGTATATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
* **
79753481 TGAAGATTGCACATTCTGTCACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
* * * * * *
79753546 TCCCAACACGGTTGAGAAGTATATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTCG
131 TCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
* * * *
79753611 GTTGAAGATTGCAGATTTTGTCACCCTAAGAAGTAGTGGAGCAGATTGAAGATGGTGATTCTTAT
196 GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
* ** * * * * *
79753676 CTTCCCAACACAGTGGAGAAGTGGATTGAAGCCATTCGTCCTACCACCCTAAACAGTAGTCGAGT
261 CTTCCCAACACAGTTGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
79753741 AGGTTGAAGATAT-CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTG-----
326 AGGTTGAAGAT-TGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCT
79753800 -A--TTC
390 TATCTTC
*
79753804 CCAAAACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
* * * * * * **
79753869 TAAAGATTTCAGACTCTGTCATCCTGAGCAGTAGTGGAGCAGATC-AATTATGGTGAATCTCGTC
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAA-GATGGTGAATCTTATC
* * *
79753933 TTCCCAATACAGTAGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTT
130 TTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTA
*
79753998 GGTTGAAGATTGCAGATTCTGTCGCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTA
195 GGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTA
* * * * * * * *
79754063 TGTTCCCAATACAGTGGAGAAGCAGATCTAAGCCTTTAGTGCTACCACACTAAG-ATGTAGTGGA
260 TCTTCCCAACACAGTTGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCA-GTAGTGGA
79754127 G
324 G
79754128 CAGATCGAAG
Statistics
Matches: 5737, Mismatches: 560, Indels: 386
0.86 0.08 0.06
Matches are distributed among these distances:
333 876 0.15
334 1 0.00
338 5 0.00
340 1 0.00
341 1 0.00
343 1 0.00
348 1 0.00
349 3 0.00
353 1 0.00
354 198 0.03
355 1 0.00
359 3 0.00
360 1 0.00
362 1 0.00
368 1 0.00
370 5 0.00
374 1 0.00
375 192 0.03
376 3 0.00
380 3 0.00
381 1 0.00
382 1 0.00
383 1 0.00
385 1 0.00
387 3 0.00
388 284 0.05
389 1 0.00
390 2 0.00
391 3 0.00
393 9 0.00
394 331 0.06
395 819 0.14
396 2527 0.44
397 43 0.01
398 12 0.00
399 4 0.00
400 2 0.00
402 2 0.00
404 2 0.00
405 2 0.00
406 1 0.00
407 1 0.00
408 64 0.01
409 2 0.00
410 2 0.00
411 2 0.00
412 1 0.00
414 2 0.00
417 1 0.00
418 11 0.00
419 1 0.00
420 28 0.00
421 6 0.00
422 6 0.00
423 4 0.00
426 1 0.00
427 1 0.00
428 1 0.00
429 1 0.00
431 4 0.00
432 67 0.01
434 1 0.00
436 1 0.00
438 1 0.00
439 2 0.00
441 4 0.00
443 29 0.01
444 85 0.01
445 53 0.01
446 2 0.00
447 3 0.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (396 bp):
CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
TCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAG
GTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
CTTCCCAACACAGTTGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTT
ATCTTC
Found at i:79750968 original size:44 final size:44
Alignment explanation
Indices: 79750759--79750969 Score: 173
Period size: 44 Copynumber: 4.8 Consensus size: 44
79750749 CTATTAGTCT
* *
79750759 TATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
1 TATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATTC
* * * ** *
79750803 TGTCGCCCTAAGCAGTAGTGGAGCAGATCGAAGA-TGGTGAATC
1 TATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATTC
* * * * *
79750846 TTATCTACCCAGTAA--AGTGGAGAAGCAGATTTAAGCCA-T-CAG-TCC
1 -TATC-ACCC--TAAGCAGTAGTGGAGCAGATTGAAG--ATTGCAGATTC
* *
79750891 TATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
1 TATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATTC
* *
79750935 TGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGAT
1 TATCACCCTAAGCAGTAGTGGAGCAGATTGAAGAT
79750970 GGTGAATCTT
Statistics
Matches: 126, Mismatches: 30, Indels: 22
0.71 0.17 0.12
Matches are distributed among these distances:
41 4 0.03
42 1 0.01
43 27 0.21
44 69 0.55
45 19 0.15
46 1 0.01
47 5 0.04
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.24
Consensus pattern (44 bp):
TATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATTC
Found at i:79751065 original size:111 final size:111
Alignment explanation
Indices: 79750871--79752092 Score: 2408
Period size: 111 Copynumber: 11.0 Consensus size: 111
79750861 AGTGGAGAAG
*
79750871 CAGATTTAAGCCATCAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
1 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
79750936 GTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
66 GTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
79750982 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
1 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
79751047 GTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
66 GTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
79751093 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
1 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
79751158 GTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
66 GTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
79751204 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
1 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
79751269 GTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
66 GTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
79751315 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
1 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
79751380 GTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
66 GTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
79751426 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
1 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
79751491 GTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
66 GTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
79751537 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
1 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
79751602 GTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
66 GTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
79751648 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
1 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
79751713 GTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
66 GTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
79751759 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
1 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
79751824 GTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
66 GTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
79751870 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
1 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
79751935 GTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
66 GTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
*
79751981 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCACATTCT
1 CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
**
79752046 GTCACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
66 GTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
79752092 C
1 C
79752093 TTCCCAACAC
Statistics
Matches: 1107, Mismatches: 4, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
111 1107 1.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (111 bp):
CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
GTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
Found at i:79754139 original size:132 final size:132
Alignment explanation
Indices: 79751984--79754127 Score: 3682
Period size: 132 Copynumber: 16.3 Consensus size: 132
79751974 ATCTTATCAG
79751984 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCACATTCTGTC
1 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCACATTCTGTC
79752049 ACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACGGTTGAGAAGT
66 ACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACGGTTGAGAAGT
79752114 AT
131 AT
79752116 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCACATTCTGTC
1 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCACATTCTGTC
79752181 ACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACGGTTGAGAAGT
66 ACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACGGTTGAGAAGT
79752246 AT
131 AT
79752248 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCACATTCTGTC
1 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCACATTCTGTC
79752313 ACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACGGTTGAGAAGT
66 ACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACGGTTGAGAAGT
79752378 AT
131 AT
79752380 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCACATTCTGTC
1 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCACATTCTGTC
79752445 ACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACGGTTGAGAAGT
66 ACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACGGTTGAGAAGT
79752510 AT
131 AT
79752512 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCACATTCTGTC
1 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCACATTCTGTC
79752577 ACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACGGTTGAGAAGT
66 ACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACGGTTGAGAAGT
79752642 AT
131 AT
79752644 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCACATTCTGTC
1 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCACATTCTGTC
79752709 ACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACGGTTGAGAAGT
66 ACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACGGTTGAGAAGT
79752774 AT
131 AT
79752776 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCACATTCTGTC
1 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCACATTCTGTC
79752841 ACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACGGTTGAGAAGT
66 ACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACGGTTGAGAAGT
79752906 AT
131 AT
79752908 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCACATTCTGTC
1 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCACATTCTGTC
79752973 ACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACGGTTGAGAAGT
66 ACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACGGTTGAGAAGT
79753038 AT
131 AT
79753040 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCACATTCTGTC
1 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCACATTCTGTC
79753105 ACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACGGTTGAGAAGT
66 ACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACGGTTGAGAAGT
79753170 AT
131 AT
79753172 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCACATTCTGTC
1 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCACATTCTGTC
79753237 ACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACGGTTGAGAAGT
66 ACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACGGTTGAGAAGT
79753302 AT
131 AT
79753304 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCACATTCTGTC
1 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCACATTCTGTC
79753369 ACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACGGTTGAGAAGT
66 ACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACGGTTGAGAAGT
79753434 AT
131 AT
79753436 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCACATTCTGTC
1 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCACATTCTGTC
79753501 ACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACGGTTGAGAAGT
66 ACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACGGTTGAGAAGT
79753566 AT
131 AT
* * *
79753568 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTCGGTTGAAGATTGCAGATTTTGTC
1 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCACATTCTGTC
** * * * * *
79753633 ACCCTAAGAAGTAGTGGAGCAGATTGAAGATGGTGATTCTTATCTTCCCAACACAGTGGAGAAGT
66 ACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACGGTTGAGAAGT
**
79753698 GG
131 AT
* * * * * *
79753700 ATTGAAGCCATTCGTCCTACCACCCTAAACAGTAGTCGAGTAGGTTGAAGATAT-CAGATTCTGT
1 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGAT-TGCACATTCTGT
** * * *
79753764 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTG------A--TTCCCAAAACAGTGGAGAAG
65 CACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACGGTTGAGAAG
* *
79753821 CAG
130 TAT
* * * *
79753824 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTTCAGACTCTGTC
1 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCACATTCTGTC
* * * ** * * *
79753889 A-TCCTGAGCAGTAGTGGAGCAGATC-AATTATGGTGAATCTCGTCTTCCCAATACAGTAGAGAA
66 ACT-ATAAGCAGTAGTGGAGCAGATCGAA-GATGGTGAATCTTATCTTCCCAACACGGTTGAGAA
*
79753952 GTAG
129 GTAT
* *
79753956 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTTGGTTGAAGATTGCAGATTCTGTC
1 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCACATTCTGTC
* ** * * * * *
79754021 GCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATGTTCCCAATACAGTGGAGAAGC
66 ACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACGGTTGAGAAGT
*
79754086 AG
131 AT
* * * * *
79754088 ATCTAAGCCTTTAGTGCTACCACACTAAG-ATGTAGTGGAG
1 ATTTAAGCCATTAGTCCTATCACCCTAAGCA-GTAGTGGAG
79754128 CAGATCGAAG
Statistics
Matches: 1941, Mismatches: 56, Indels: 30
0.96 0.03 0.01
Matches are distributed among these distances:
123 3 0.00
124 104 0.05
126 1 0.00
131 1 0.00
132 1829 0.94
133 3 0.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (132 bp):
ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCACATTCTGTC
ACTATAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACGGTTGAGAAGT
AT
Found at i:79754144 original size:220 final size:220
Alignment explanation
Indices: 79753895--79754347 Score: 646
Period size: 220 Copynumber: 2.1 Consensus size: 220
79753885 TGTCATCCTG
* ** * *
79753895 AGCAGTAGTGGAGCAGATCAATTATGGTGAATCTCGTCTTCCCAATACAGTAG-AGAAGTAGATT
1 AGCAGTAGTGGAGCAGATCAATGATGGTGAATCTAATCTTCCCAAGACAGT-GTAGAAGCAGATT
* * * *
79753959 TAAGCCATTAGTCCTATC-ACCCTAAGCAGTAGTGGAGTTGGTTGAAGATTGCAGATTCTGTCGC
65 TAAGCCATTAGTCCTA-CAACACTAAGCAGTAGTGGACTAGGTTGAAGATTGCAGATTCTGTCAC
* *
79754023 CCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATGTTCCCAATACAGTGGAGAAGCAG
129 CCTAAGCAGTAGTGGAGCAGATCCAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAG
*
79754088 ATCTAAGCCT-TTAGTGCTACCACACTA
194 ATCTAAG-CTATTAGTCCTACCACACTA
* *
79754115 AG-ATGTAGTGGAGCAGATCGAA-GATGGTGAATCTAATCTTCTCAAGAGAGTGTAGAAGCAGAT
1 AGCA-GTAGTGGAGCAGATC-AATGATGGTGAATCTAATCTTCCCAAGACAGTGTAGAAGCAGAT
* *
79754178 TTAAGCCATTAGTCCTACAACACTAAGGAGTGGTGGACTAGGTTGAAGATTGCAGATTCTGTCAC
64 TTAAGCCATTAGTCCTACAACACTAAGCAGTAGTGGACTAGGTTGAAGATTGCAGATTCTGTCAC
79754243 CCTAAGCAGTAGTGGAGCAGATCCAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAG
129 CCTAAGCAGTAGTGGAGCAGATCCAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAG
* * * *
79754308 GTTTAAGCTATTAGTCCTATCACCCTA
194 ATCTAAGCTATTAGTCCTACCACACTA
79754335 AGCAGTAGTGGAG
1 AGCAGTAGTGGAG
79754348 TCGGTTGAAG
Statistics
Matches: 207, Mismatches: 20, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
219 5 0.02
220 199 0.96
221 3 0.01
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (220 bp):
AGCAGTAGTGGAGCAGATCAATGATGGTGAATCTAATCTTCCCAAGACAGTGTAGAAGCAGATTT
AAGCCATTAGTCCTACAACACTAAGCAGTAGTGGACTAGGTTGAAGATTGCAGATTCTGTCACCC
TAAGCAGTAGTGGAGCAGATCCAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAT
CTAAGCTATTAGTCCTACCACACTA
Found at i:79754227 original size:88 final size:88
Alignment explanation
Indices: 79754031--79754204 Score: 258
Period size: 88 Copynumber: 2.0 Consensus size: 88
79754021 GCCCTAAGCA
* * *
79754031 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATGTTCCCAATACAGTGGAGAAGCAGATCTAAGC
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTAATCTTCCCAAGACAGTGGAGAAGCAGATCTAAGC
* * *
79754096 CTTTAGTGCTACCACACTAAGAT
66 CATTAGTCCTACAACACTAAGAT
* * * *
79754119 GTAGTGGAGCAGATCGAAGATGGTGAATCTAATCTTCTCAAGAGAGTGTAGAAGCAGATTTAAGC
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTAATCTTCCCAAGACAGTGGAGAAGCAGATCTAAGC
79754184 CATTAGTCCTACAACACTAAG
66 CATTAGTCCTACAACACTAAG
79754205 GAGTGGTGGA
Statistics
Matches: 76, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
88 76 1.00
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (88 bp):
GTAGTGGAGCAGATCGAAGATGGTGAATCTAATCTTCCCAAGACAGTGGAGAAGCAGATCTAAGC
CATTAGTCCTACAACACTAAGAT
Found at i:79754354 original size:132 final size:132
Alignment explanation
Indices: 79754119--79756284 Score: 3274
Period size: 132 Copynumber: 16.4 Consensus size: 132
79754109 ACACTAAGAT
* * * * *
79754119 GTAGTGGAGCAGATCGAAGATGGTGAATCTAATCTTCTCAAGAGAGTGTAGAAGCAGATTTAAGC
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
* * * *
79754184 CATTAGTCCTA-CAACACTAAGGAGTGGTGGACTAGGTTGAAGATTGCAGATTCTGTCACCCTAA
66 CATTAGTCCTATC-ACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAA
79754248 GCA
130 GCA
* *
79754251 GTAGTGGAGCAGATCCAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGGTTTAAGC
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
* *
79754316 TATTAGTCCTATCACCCTAAGCAGTAGTGGAGTCGGTTGAAGATTGCAGATTCTGTCACCCTAAG
66 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAG
79754381 CA
131 CA
79754383 GTAGT-GATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAG
1 GTAGTGGA-GCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAG
** * * *
79754447 CCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAATTTAAAGATTACAGATTCTGTCACCCTGA
65 CCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAA
79754512 GCA
130 GCA
* * *
79754515 GTAGTGGAGCAGATCGAATATGGTGAATCTCATCTT-CCAACTACAATGGAGAAGCAGATTTAAG
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAA-TACAGTGGAGAAGCAGATTTAAG
* * *
79754579 CTATTAGTCTTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCGCCCTAA
65 CCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAA
79754644 GCA
130 GCA
* *
79754647 GTAGTGGAGAAGATCGAAGATGGTGAATCTTATCTACCCAATACAGTGGAGAAGCAGATTTAAGC
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
* * * * *
79754712 CATCAGTCCTATCACCCTAAGCAGTAGTGGAGAAGGTTGAAGATT-TATGATTCTTTTACCCTAA
66 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA-GATTCTGTCACCCTAA
79754776 GCA
130 GCA
* * *
79754779 TTAGTGGAGCAGATCGAAGATGGTGAATCTTATGTTCCCAATACAGTGGAGAAGCATATTTAAGC
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
* * * *
79754844 TATTAGTCCTATCACCCTAAGCAGCAGTGGAGTCGGTTTAAGATTGCAGATTCTGTCACCCTAAG
66 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAG
*
79754909 TA
131 CA
* *
79754911 GAAGT-GATGCAGATCGAAGATGGTAAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAG
1 GTAGTGGA-GCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAG
* * * *
79754975 CCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAAGTTAAAGATTACAGATTCTGTCACCCTGA
65 CCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAA
79755040 GCA
130 GCA
* * *
79755043 GTAGTGGAGCAGATCGAATATGGTGAATCTCATCTT-CCAACTACAATGGAGAAGCAGATTTAAG
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAA-TACAGTGGAGAAGCAGATTTAAG
* * *
79755107 CTATTAGTCTTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCGCCCTAA
65 CCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAA
79755172 GCA
130 GCA
* * * * **
79755175 GTAGTGGAGAAGATCGAAGATGGTGAATCTTATCTACCCAGTAAAGTGGAGAAGCCTATTTAAGC
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
* * * * *
79755240 CATCAGTCCTATCACCCTAAGCAGTAGTGGAGAAGGTTGAAGATT-TATGATTCTTTTACCCTAA
66 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA-GATTCTGTCACCCTAA
79755304 GCA
130 GCA
* * *
79755307 TTAGTGGAGCAGATCGAAGATGGTGAATCTTATGTTCCCAATACAGTGGAGAAGCATATTTAAGC
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
* * * *
79755372 TATTAGTCCTATCACCCTAAGCAGCAGTGGAGTCGGTTTAAGATTGCAGATTCTGTCACCCTAAG
66 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAG
*
79755437 TA
131 CA
* *
79755439 GAAGT-GATGCAGATCGAAGATGGTAAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAG
1 GTAGTGGA-GCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAG
*
79755503 CCATTAGTCCTATCACCCTAAGCAGTAGCGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAA
65 CCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAA
79755568 GCA
130 GCA
79755571 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
* * * * * * *
79755636 TATTAGTCCAATCCCCCTAAGCAGTAGTGGAGTCGGTTGAAGATTACATATTTTGTCACCCTAAG
66 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAG
*
79755701 AA
131 CA
* * * * * * *
79755703 GTAATGGAGCAGATCGAAGATGGTGATTCTTATCTTTCAAACACTGTGGAGAAG-TGCATTTAAG
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAG-ATTTAAG
* *
79755767 CCATTCA-TCCTACCACCCTAAGCAGTAGTCGAGTAGGTTGAAGATAT-CAGATTCTGTCACCCT
65 CCATT-AGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGAT-TGCAGATTCTGTCACCCT
*
79755830 GAGCA
128 AAGCA
* * * *
79755835 GTAGTGGAGCAGATCGAATATGGTGAATCTCATCTTCCCAATACAGTTGAGAAGCAGATTTAAAC
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
*
79755900 CATTAGTTCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAG
66 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAG
79755965 CA
131 CA
79755967 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
79756032 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAG
66 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAG
79756097 CA
131 CA
*
79756099 GTAGTGGAGCAGATCGAATATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
*
79756164 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTTTGTCACCCTAAG
66 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAG
79756229 CA
131 CA
79756231 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
79756285 NNNNNNNNNN
Statistics
Matches: 1831, Mismatches: 182, Indels: 42
0.89 0.09 0.02
Matches are distributed among these distances:
131 19 0.01
132 1793 0.98
133 19 0.01
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (132 bp):
GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAG
CA
Found at i:79755974 original size:44 final size:44
Alignment explanation
Indices: 79754220--79756251 Score: 337
Period size: 44 Copynumber: 46.2 Consensus size: 44
79754210 GTGGACTAGG
*
79754220 TTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGA
1 TTGAAGATTGCAGATTCTATCACCCTAAGCAGTAGTGGAGCAGA
** ** * * * * * * *
79754264 TCCAAGA-TGGTGAATCTTATCTTCCC-AATACAGTGGAGAAGCAGG
1 TTGAAGATTGCAGATTC-TATC-ACCCTAA-GCAGTAGTGGAGCAGA
* * *
79754309 TTTAAGCTATT--AG-TCCTATCACCCTAAGCAGTAGTGGAGTC-GG
1 TTGAAG--ATTGCAGATTCTATCACCCTAAGCAGTAGTGGAG-CAGA
*
79754352 TTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGT-GATGCAGA
1 TTGAAGATTGCAGATTCTATCACCCTAAGCAGTAGTGGA-GCAGA
* ** * * * * * *
79754396 TCGAAGA-TGGTGAATCTTATCTTCCC-AATACAGTGGAGAAGCAGA
1 TTGAAGATTGCAGATTC-TATC-ACCCTAA-GCAGTAGTGGAGCAGA
* * *
79754441 TTTAAGCCATT--AG-TCCTATCACCCTAAGCAGTAGTGGAGTA-A
1 TTGAAG--ATTGCAGATTCTATCACCCTAAGCAGTAGTGGAGCAGA
* * * *
79754483 TTTAAAGATTACAGATTCTGTCACCCTGAGCAGTAGTGGAGCAGA
1 -TTGAAGATTGCAGATTCTATCACCCTAAGCAGTAGTGGAGCAGA
* * ** * * * * * *
79754528 TCGAATA-TGGTGAATCTCATCTTCCAACT-A-CAATGGAGAAGCAGA
1 TTGAAGATTGCAGATTCT-ATC-ACC--CTAAGCAGTAGTGGAGCAGA
* * *
79754573 TTTAAGCTATT--AG--TCTTATCACCCTAAGCAGTAGTGGAGTAGG
1 TTGAAG--ATTGCAGATTC-TATCACCCTAAGCAGTAGTGGAGCAGA
* * *
79754616 TTGAAGATTGCAGATTCTGTCGCCCTAAGCAGTAGTGGAGAAGA
1 TTGAAGATTGCAGATTCTATCACCCTAAGCAGTAGTGGAGCAGA
* ** * * * * *
79754660 TCGAAGA-TGGTGAATCTTATCTACCC-AATACAGTGGAGAAGCAGA
1 TTGAAGATTGCAGATTC-TATC-ACCCTAA-GCAGTAGTGGAGCAGA
* * * *
79754705 TTTAAGCCA-T-CAG-TCCTATCACCCTAAGCAGTAGTGGAGAAGG
1 TTGAAG--ATTGCAGATTCTATCACCCTAAGCAGTAGTGGAGCAGA
* * * *
79754748 TTGAAGATT-TATGATTCTTTTACCCTAAGCATTAGTGGAGCAGA
1 TTGAAGATTGCA-GATTCTATCACCCTAAGCAGTAGTGGAGCAGA
* ** * ** * * * * *
79754792 TCGAAGA-TGGTGAATCTTATGTTCCC-AATACAGTGGAGAAGCATA
1 TTGAAGATTGCAGATTC-TAT-CACCCTAA-GCAGTAGTGGAGCAGA
* * * *
79754837 TTTAAGCTATT--AG-TCCTATCACCCTAAGCAGCAGTGGAGTC-GG
1 TTGAAG--ATTGCAGATTCTATCACCCTAAGCAGTAGTGGAG-CAGA
* * * *
79754880 TTTAAGATTGCAGATTCTGTCACCCTAAGTAGAAGT-GATGCAGA
1 TTGAAGATTGCAGATTCTATCACCCTAAGCAGTAGTGGA-GCAGA
* * * * * * * * *
79754924 TCGAAGATGGTA-AATCTTATCTTCCC-AATACAGTGGAGAAGCAGA
1 TTGAAGATTGCAGATTC-TATC-ACCCTAA-GCAGTAGTGGAGCAGA
* * *
79754969 TTTAAGCCATT--AG-TCCTATCACCCTAAGCAGTAGTGGAGTA-A
1 TTGAAG--ATTGCAGATTCTATCACCCTAAGCAGTAGTGGAGCAGA
* * * *
79755011 GTTAAAGATTACAGATTCTGTCACCCTGAGCAGTAGTGGAGCAGA
1 -TTGAAGATTGCAGATTCTATCACCCTAAGCAGTAGTGGAGCAGA
* * ** * * * * * *
79755056 TCGAATA-TGGTGAATCTCATCTTCCAACT-A-CAATGGAGAAGCAGA
1 TTGAAGATTGCAGATTCT-ATC-ACC--CTAAGCAGTAGTGGAGCAGA
* * *
79755101 TTTAAGCTATT--AG--TCTTATCACCCTAAGCAGTAGTGGAGTAGG
1 TTGAAG--ATTGCAGATTC-TATCACCCTAAGCAGTAGTGGAGCAGA
* * *
79755144 TTGAAGATTGCAGATTCTGTCGCCCTAAGCAGTAGTGGAGAAGA
1 TTGAAGATTGCAGATTCTATCACCCTAAGCAGTAGTGGAGCAGA
* ** * * * *
79755188 TCGAAGA-TGGTGAATCTTATCTACCC--AGTA-AAGTGGAGAAGCCTA
1 TTGAAGATTGCAGATTC-TATC-ACCCTAAGCAGTAGTGGAGCAG---A
* * * *
79755233 TTTAAGCCA-T-CAG-TCCTATCACCCTAAGCAGTAGTGGAGAAGG
1 TTGAAG--ATTGCAGATTCTATCACCCTAAGCAGTAGTGGAGCAGA
* * * *
79755276 TTGAAGATT-TATGATTCTTTTACCCTAAGCATTAGTGGAGCAGA
1 TTGAAGATTGCA-GATTCTATCACCCTAAGCAGTAGTGGAGCAGA
* ** * ** * * * * *
79755320 TCGAAGA-TGGTGAATCTTATGTTCCC-AATACAGTGGAGAAGCATA
1 TTGAAGATTGCAGATTC-TAT-CACCCTAA-GCAGTAGTGGAGCAGA
* * * *
79755365 TTTAAGCTATT--AG-TCCTATCACCCTAAGCAGCAGTGGAGTC-GG
1 TTGAAG--ATTGCAGATTCTATCACCCTAAGCAGTAGTGGAG-CAGA
* * * *
79755408 TTTAAGATTGCAGATTCTGTCACCCTAAGTAGAAGT-GATGCAGA
1 TTGAAGATTGCAGATTCTATCACCCTAAGCAGTAGTGGA-GCAGA
* * * * * * * * *
79755452 TCGAAGATGGTA-AATCTTATCTTCCC-AATACAGTGGAGAAGCAGA
1 TTGAAGATTGCAGATTC-TATC-ACCCTAA-GCAGTAGTGGAGCAGA
* * * * *
79755497 TTTAAGCCATT--AG-TCCTATCACCCTAAGCAGTAGCGGAGTAGG
1 TTGAAG--ATTGCAGATTCTATCACCCTAAGCAGTAGTGGAGCAGA
*
79755540 TTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGA
1 TTGAAGATTGCAGATTCTATCACCCTAAGCAGTAGTGGAGCAGA
* ** * * * * * *
79755584 TCGAAGA-TGGTGAATCTTATCTTCCC-AATACAGTGGAGAAGCAGA
1 TTGAAGATTGCAGATTC-TATC-ACCCTAA-GCAGTAGTGGAGCAGA
* * * * *
79755629 TTTAAGCTATT--AG-TCCAATCCCCCTAAGCAGTAGTGGAGTC-GG
1 TTGAAG--ATTGCAGATTCTATCACCCTAAGCAGTAGTGGAG-CAGA
* * * * * *
79755672 TTGAAGATTACATATTTTGTCACCCTAAGAAGTAATGGAGCAGA
1 TTGAAGATTGCAGATTCTATCACCCTAAGCAGTAGTGGAGCAGA
* ** *** * * *
79755716 TCGAAGA-TGGTGATTCTTATCTTTC-AAACACT-GTGGAGAAGTGCA
1 TTGAAGATTGCAGATTC-TATCACCCTAAGCAGTAGTGGAGCA--G-A
* * * * * *
79755761 TTTAAGCCATT-C--ATCCTACCACCCTAAGCAGTAGTCGAGTAGG
1 TTGAAG--ATTGCAGATTCTATCACCCTAAGCAGTAGTGGAGCAGA
* *
79755804 TTGAAGATAT-CAGATTCTGTCACCCTGAGCAGTAGTGGAGCAGA
1 TTGAAGAT-TGCAGATTCTATCACCCTAAGCAGTAGTGGAGCAGA
* * ** * * * * * *
79755848 TCGAATA-TGGTGAATCTCATCTTCCC-AATACAGTTGAGAAGCAGA
1 TTGAAGATTGCAGATTCT-ATC-ACCCTAA-GCAGTAGTGGAGCAGA
* * * *
79755893 TTTAAACCATT--AG-TTCTATCACCCTAAGCAGTAGTGGAGTAGG
1 -TTGAA-GATTGCAGATTCTATCACCCTAAGCAGTAGTGGAGCAGA
*
79755936 TTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGA
1 TTGAAGATTGCAGATTCTATCACCCTAAGCAGTAGTGGAGCAGA
* ** * * * * * *
79755980 TCGAAGA-TGGTGAATCTTATCTTCCC-AATACAGTGGAGAAGCAGA
1 TTGAAGATTGCAGATTC-TATC-ACCCTAA-GCAGTAGTGGAGCAGA
* * * *
79756025 TTTAAGCCATT--AG-TCCTATCACCCTAAGCAGTAGTGGAGTAGG
1 TTGAAG--ATTGCAGATTCTATCACCCTAAGCAGTAGTGGAGCAGA
*
79756068 TTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGA
1 TTGAAGATTGCAGATTCTATCACCCTAAGCAGTAGTGGAGCAGA
* * ** * * * * * *
79756112 TCGAATA-TGGTGAATCTTATCTTCCC-AATACAGTGGAGAAGCAGA
1 TTGAAGATTGCAGATTC-TATC-ACCCTAA-GCAGTAGTGGAGCAGA
* * * *
79756157 TTTAAGCCATT--AG-TCCTATCACCCTAAGCAGTAGTGGAGTAGG
1 TTGAAG--ATTGCAGATTCTATCACCCTAAGCAGTAGTGGAGCAGA
* *
79756200 TTGAAGATTGCAGATTTTGTCACCCTAAGCAGTAGTGGAGCAGA
1 TTGAAGATTGCAGATTCTATCACCCTAAGCAGTAGTGGAGCAGA
*
79756244 TCGAAGAT
1 TTGAAGAT
79756252 GGTGAATCTT
Statistics
Matches: 1362, Mismatches: 443, Indels: 366
0.63 0.20 0.17
Matches are distributed among these distances:
41 44 0.03
42 31 0.02
43 354 0.26
44 593 0.44
45 270 0.20
46 36 0.03
47 23 0.02
48 11 0.01
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.27
Consensus pattern (44 bp):
TTGAAGATTGCAGATTCTATCACCCTAAGCAGTAGTGGAGCAGA
Found at i:79757524 original size:132 final size:132
Alignment explanation
Indices: 79757283--79761172 Score: 4990
Period size: 132 Copynumber: 29.4 Consensus size: 132
79757273 NNNNNNNNNN
* * *
79757283 TAAGCAGTAGTGGAGCAGATCGAATATGATGAATCTTACCTTCCCAATACAGTGGAGAAGCAGAT
1 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAT
* * * * * *
79757348 TTAAGCGATCAGTACTATCACCCTAAGTAGTAGTGGAGTAGGTTGAAGATT-TATGATTATTTCA
66 TTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTA-GATTCTGTCA
79757412 CCC
130 CCC
* * *
79757415 CAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACTGTGGAGAAGCAGGT
1 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAT
* * * * *
79757480 TTAAGCCATTAGTCCTATCACCCTAAGCACTAGTAGAGTTGGTTGCAGATT-TCTGATTCTGTCA
66 TTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGT-AGATTCTGTCA
79757544 CCC
130 CCC
* * * * * *
79757547 TAGGTAGTAGTGGATCAGATAGAAGTTGGTGAATCTTATCTTCCCAATACAGTGGAGAAGTAGAT
1 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAT
* * * **
79757612 TGAAGCCATTAGTGCTATCACCTTAAGCTA-TAGTGGAGTAGGTTGAAGATTACAGATTCTGTCA
66 TTAAGCCATTAGTCCTATCACCCTAAGC-AGTAGTGGAGTAGGTTGAAGATTGTAGATTCTGTCA
79757676 CCC
130 CCC
* *
79757679 TAAGCAGTAGTGGAGCAGATCCAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGTAGAT
1 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAT
* * * **
79757744 TGAAGCCATTAGTGCTATCACCTTAAGCTA-TAGTGGAGTAGGTTGAAGATTACAGATTCTGTCA
66 TTAAGCCATTAGTCCTATCACCCTAAGC-AGTAGTGGAGTAGGTTGAAGATTGTAGATTCTGTCA
79757808 CCC
130 CCC
* * *
79757811 TAAGCAGTAGTGGAGCATATCGAAGATGGTGAATCTTATCTTCCCAAAACAGTGGAGAAGCATAT
1 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAT
* * * * ** *
79757876 TTAAGCCATTAGTCCAATCACCCTAAGCAGTATTGGAGTCGGTCGAAGATTACAGATT-TTTCAC
66 TTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATTCTGTCAC
79757940 CC
131 CC
* * ** * * * *
79757942 TAGGAAGTAGTGGAATAGATCGAAGATGGTGAATCTTATCTTCTCAAGAGAGTGGAAAAGCAGAT
1 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAT
* * * *
79758007 TTAAGCAATTAGTCCTACCACCCTAAGGAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCAC
66 TTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATTCTGTCAC
79758072 CC
131 CC
* * * * * * *
79758074 TGAGCAGTAGTGGAGCATATCGAATATGGTGGATCTCATCTTCCAAATACAATGGAGAAGCAGAT
1 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAT
* * *
79758139 TTAAGCTATTAGTCCTATCACCCTAAGCAGTTGTGGAGTAGGTTGAAGATTGCAGATTCTGTCAC
66 TTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATTCTGTCAC
79758204 CC
131 CC
* * *
79758206 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTTCCAATACAGTGGAGAAGTAGTT
1 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAT
* * * *
79758271 TTAAGCCATTAGTCCTATCAGCCTAAGCAGTAGTGGAGTAGGTTCAAGATTGCAGATTCTGCCAC
66 TTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATTCTGTCAC
79758336 CC
131 CC
** * * * *
79758338 TAAGCAGTAGTGGATTAGATCGAATATGATGAATCTTACCTTCCAAATACAGTGGAGAAGCAGAT
1 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAT
* *
79758403 TTAAGCCATTAGTCCTATCGCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCAC
66 TTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATTCTGTCAC
79758468 CC
131 CC
* * * * * * * *
79758470 TAAGCTGTATTGGAGCAGTTGGAATATGTTGAATCATATATTCCCAATACAGTGGAGAAGCAGAT
1 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAT
*
79758535 TTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCAC
66 TTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATTCTGTCAC
79758600 CC
131 CC
* * * * *
79758602 TAAGCAGTAGTGGAGCAGTTGGAATATGGTGAATCATATATTCCCAATACAGTGGAGAAGCAGAT
1 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAT
* * * *
79758667 TTAAGCCATTAGTCCTATCACCCTAAGCAGTACTGAAGTAGGTTGAAGATTGCAGATTCTGTCAG
66 TTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATTCTGTCAC
79758732 CC
131 CC
* *
79758734 TCAGCAATAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAT
1 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAT
* * *
79758799 TTTAGCCATTAGTCCTATCAGCCTAAGCAGTGGTGGAGTCA-GTTGAAGATT-TCAGATTCTGTC
66 TTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT-AGGTTGAAGATTGT-AGATTCTGTC
79758862 ACCC
129 ACCC
* * * *
79758866 TAAGCAGTAGTCGAGCAGATCGAAGATGGTGATTCTTATCTTCCCAACATAGTGGAGAAGCAGAT
1 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAT
* * *
79758931 TTAAGCCATCAGTCCTATCAGCCTAAGCAGTGGTGGAGTCA-GTTGAAGATT-TCAGATTCTGTC
66 TTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT-AGGTTGAAGATTGT-AGATTCTGTC
79758994 ACCC
129 ACCC
* * * *
79758998 TAAGCAGTAGTCGAGCAGATCGAAGATGGTGATTCTTATCTTCCCAACATAGTGGAGAAGCAGAT
1 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAT
* * * * *
79759063 TTAAGCCATCAGTCCTATCAGCCTAAGCAGTAGTGGAGTAGGGTGAAGATTGGAGATACTGTCAC
66 TTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATTCTGTCAC
79759128 CC
131 CC
* * * * * * * * *
79759130 TAAGCAGTAGTGGAGCGGATTGAAGATGGTGAATCATATCTTCTCAAGATAATGAAGTAGCAGAT
1 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAT
* * * * *
79759195 TTAAGCCATTAGCCCAATCTCTCTAAGTAGTAGTGGAGTAGGTTGAAGATT-TCAGATTCTGTCA
66 TTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGT-AGATTCTGTCA
79759259 CCC
130 CCC
* * * * * *
79759262 TAAGTAGTAGTGGAGCGGATCGAAGATGGTGAATCATATCTTCTCAAGATAGTGGAGAAGCAGAT
1 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAT
* * * * * * * *
79759327 TTAAGCCATTAGCCCAATCTCCATAAGCAGTAGTGGATTAGGTTGAAGATTGCAGAGTCAGTCAC
66 TTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATTCTGTCAC
**
79759392 AT
131 CC
* * ** * * * *
79759394 TAAGCAATAGTGTAGTGGATCGAAGATGGTGAATCTTATCTTCCTAATATAGTAGAGAAGAAGAT
1 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAT
* *
79759459 TTAAGCCATTAGTCC-ATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTATAGATTCTGTCAC
66 TTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATTCTGTCAC
79759523 CC
131 CC
** * * * * * *
79759525 TAAGCAGTAGTGGAGTGGACCGAAAATAGTGAATCTTATCTTCCCAAAACAGAGGAGAAGAAGAT
1 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAT
* ** *
79759590 TTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTATCAC
66 TTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATTCTGTCAC
*
79759655 CT
131 CC
* * * * * * *
79759657 TAAACAGTAGTGGGGCAGATCGAATATGATAAATCTTACCTTCCCAATATAGTGGAGAAGCAGAT
1 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAT
* * *
79759722 TGAAGCCATTAGTCCGATCACCCTAAGCAGTAGTGGAGTACGAGTAGGTTAAAGATTGTAGATTC
66 TTAAGCCATTAGTCCTATCACCCTAAGCAGTAGT---G---GAGTAGGTTGAAGATTGTAGATTC
*
79759787 TGTCAGCC
125 TGTCACCC
* * *
79759795 TAAGCAGTAGTGGAGTAGATCGAAGATGGTGAATCTTATCTTCTCAATACAGTGGAGAAGTAGAT
1 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAT
* * ** ** * *
79759860 TTAAGCCATTAGTCCCATCACCCTAAGCAGTAGTGGAGTCGGTCAAAGATTACAAATT-TTTCAC
66 TTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATTCTGTCAC
79759924 CC
131 CC
** * * * * *
79759926 TAATAAGTAGTGGAGCAGATCGAAGATAGTGAATCTTATCTTCTCAAGAGAGTGTAGAAGCAGAT
1 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAT
* * * * *
79759991 TTAAGCCATTAGTCCTA-CAACCCTAAGGAGTGGTGGACTACGTTGAAGATTGCAGATTCTGTCA
66 TTAAGCCATTAGTCCTATC-ACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATTCTGTCA
79760055 CCC
130 CCC
* * * *
79760058 TAAGCAGTAGTGGAGCAGATCAAAGATAGTGAATCTTATCTTCCCAATAAAGTGGAGAAGTAGAT
1 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAT
* * *
79760123 TTAAGCCAGTAGTCCTATCACCCTAAGCAGTAGTGGAGTAAGTTGAAGATTGCAGATTCTGTCAC
66 TTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATTCTGTCAC
79760188 CC
131 CC
* * * * *
79760190 TGAGCAGTAGTGGAGCAGATCGAATATGGTGAATCTCACCTT-CCAACTACAATGGAGAAGCAGA
1 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAA-TACAGTGGAGAAGCAGA
* * * * * *
79760254 TTTAAGCTATTAGTCTTATCACCCTAAGTAGTAGTGGAGTAGGTTGAAGATTGCAGATTTTGTCG
65 TTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATTCTGTCA
79760319 CCC
130 CCC
* * *
79760322 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTACCCAATAAAGTGGAGAACCAGAT
1 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAT
* * *
79760387 TTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTCAAGATTGCAGATTCTATCAC
66 TTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATTCTGTCAC
79760452 CC
131 CC
* * * * * *
79760454 TAAGCAGTAGTGGATCAGATCGAATATGATTAATCTTACCTTCCCAATACAGTGGAGAAGCAAAT
1 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAT
* * * * *
79760519 TTAAGCCATCAGTCCTATCACCCTAAGAAGTAGTGGAGAAGGTTGAAGATT-TATGATTCTTTTA
66 TTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTA-GATTCTGTCA
79760583 CCC
130 CCC
* *
79760586 TAAGCATTAGTGGAGCAGATCGAAGATGGTGAATCTTATGTTCCCAATACAGTGGAGAAGCAGAT
1 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAT
* * *
79760651 ATAAGCCATTAGTCCTACCACCCTAAGCAGTAGTCGAGTAGGTTGAAGATTGTAGATTCTGTCAC
66 TTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATTCTGTCAC
79760716 CC
131 CC
* *
79760718 -ACAGCAGTAGTGGAGTAGATCTAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGA
1 TA-AGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGA
* * * * **
79760782 TTTAAGCTATTAGTCCTATCACCCTAAGCAGCAGTGGAGTCA-GTTTAAAATTACAGATTCTGTC
65 TTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT-AGGTTGAAGATTGTAGATTCTGTC
79760846 ACCC
129 ACCC
* * *
79760850 TAAGCAGAAGT-GATGCAGATCGAAGATGGTAAATCTTATCTTCCCAATACAGTGGAGAAGTAGA
1 TAAGCAGTAGTGGA-GCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGA
* *
79760914 TTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGCGGAGTAGGTTGAAGATTGCAGATTCTGTCA
65 TTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATTCTGTCA
79760979 CCC
130 CCC
* *
79760982 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGGGAACCAGAT
1 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAT
* * * * ** * *
79761047 TTAAGCCATTAGTCCAACCCCCCTAAGCAGTAGTGGAGTCGGTTGAAGATTACATATTTTGTCAC
66 TTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATTCTGTCAC
79761112 CC
131 CC
* * * *
79761114 TAAGAAGTAGTGGAGCAGATCAAAGATGGTGATTCTTATCTTCCCAACACAGTGGAGAA
1 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
79761173 AGATCGAAGA
Statistics
Matches: 3319, Mismatches: 408, Indels: 62
0.88 0.11 0.02
Matches are distributed among these distances:
130 1 0.00
131 345 0.10
132 2845 0.86
133 13 0.00
135 2 0.00
138 113 0.03
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (132 bp):
TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAT
TTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATTCTGTCAC
CC
Found at i:79757690 original size:44 final size:44
Alignment explanation
Indices: 79757626--79757825 Score: 117
Period size: 44 Copynumber: 4.5 Consensus size: 44
79757616 GCCATTAGTG
* *
79757626 CTATCACCTTAAGCTA-TAGTGGAGTAGGTTGAAGATTACAGATT
1 CTATCACCCTAAGC-AGTAGTGGAGTAGATTGAAGATTACAGATT
* * ** *** *
79757670 CTGTCACCCTAAGCAGTAGTGGAGCAGATCCAAGA-TGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTACAGATT
* * * * * *
79757713 CTTATCTTCCC-AATACAGTGGAGAAGTAGATTGAAGCCATT--AG-TG
1 C-TATC-ACCCTAA-GCAGTAGTGGAGTAGATTGAAG--ATTACAGATT
* *
79757758 CTATCACCTTAAGCTA-TAGTGGAGTAGGTTGAAGATTACAGATT
1 CTATCACCCTAAGC-AGTAGTGGAGTAGATTGAAGATTACAGATT
*
79757802 CTGTCACCCTAAGCAGTAGTGGAG
1 CTATCACCCTAAGCAGTAGTGGAG
79757826 CATATCGAAG
Statistics
Matches: 111, Mismatches: 32, Indels: 26
0.66 0.19 0.15
Matches are distributed among these distances:
41 3 0.03
43 26 0.23
44 60 0.54
45 19 0.17
46 1 0.01
47 1 0.01
48 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.28
Consensus pattern (44 bp):
CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTACAGATT
Found at i:79758869 original size:44 final size:45
Alignment explanation
Indices: 79758813--79759156 Score: 166
Period size: 44 Copynumber: 7.8 Consensus size: 45
79758803 GCCATTAGTC
* *
79758813 CTATCAGCCTAAGCAGTGGTGGAGTCAG-TTGAAGATTTCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTCAGATTGAAGATTTCAGATT
* * * *
79758857 CTGTCACCCTAAGCAGTAGTCGAG-CAGATCGAAGATGGT--GATT
1 CTATCACCCTAAGCAGTAGTGGAGTCAGATTGAAGAT-TTCAGATT
* * * *** *
79758900 CTTATCTTCCC-AA-CA-TAGTGGAGAAGCAGATTTAAGCCATCAG-TC
1 C-TATC-ACCCTAAGCAGTAGTGGAG--TCAGATTGAAGATTTCAGATT
* *
79758945 CTATCAGCCTAAGCAGTGGTGGAGTCAG-TTGAAGATTTCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTCAGATTGAAGATTTCAGATT
* * * *
79758989 CTGTCACCCTAAGCAGTAGTCGAG-CAGATCGAAGATGGT--GATT
1 CTATCACCCTAAGCAGTAGTGGAGTCAGATTGAAGAT-TTCAGATT
* * * *** *
79759032 CTTATCTTCCC-AA-CA-TAGTGGAGAAGCAGATTTAAGCCATCAG-TC
1 C-TATC-ACCCTAAGCAGTAGTGGAG--TCAGATTGAAGATTTCAGATT
* ** ** *
79759077 CTATCAGCCTAAGCAGTAGTGGAGT-AGGGTGAAGATTGGAGATA
1 CTATCACCCTAAGCAGTAGTGGAGTCAGATTGAAGATTTCAGATT
* *
79759121 CTGTCACCCTAAGCAGTAGTGGAG-CGGATTGAAGAT
1 CTATCACCCTAAGCAGTAGTGGAGTCAGATTGAAGAT
79759157 GGTGAATCAT
Statistics
Matches: 217, Mismatches: 56, Indels: 54
0.66 0.17 0.17
Matches are distributed among these distances:
42 14 0.06
43 41 0.19
44 113 0.52
45 32 0.15
46 17 0.08
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (45 bp):
CTATCACCCTAAGCAGTAGTGGAGTCAGATTGAAGATTTCAGATT
Found at i:79761183 original size:43 final size:43
Alignment explanation
Indices: 79761122--79761215 Score: 154
Period size: 43 Copynumber: 2.2 Consensus size: 43
79761112 CCTAAGAAGT
*
79761122 AGTGGAG-CAGATCAAAGATGGTGATTCTTATCTTCCCAACAC
1 AGTGGAGAAAGATCAAAGATGGTGATTCTTATCTTCCCAACAC
* *
79761164 AGTGGAGAAAGATCGAAGATGGTGATTCTTATCTTCCCAACGC
1 AGTGGAGAAAGATCAAAGATGGTGATTCTTATCTTCCCAACAC
79761207 AGTGGAGAA
1 AGTGGAGAA
79761216 GTGCATTTAA
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
42 7 0.15
43 41 0.85
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (43 bp):
AGTGGAGAAAGATCAAAGATGGTGATTCTTATCTTCCCAACAC
Found at i:79761246 original size:307 final size:307
Alignment explanation
Indices: 79760866--79761479 Score: 957
Period size: 307 Copynumber: 2.0 Consensus size: 307
79760856 GAAGTGATGC
*
79760866 AGATCGAAGATGGTAAATCTTATCTTCCCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCT
1 AGATCGAAGATGGTAAATCTTATCTTCCCAACACAGTGGAGAAGTAGATTTAAGCCATTAGTCCT
* *
79760931 ATCACCCTAAGCAGTAG-CGGAGTAGGTTGAAGAT-TGCAGATTCTGTCACCCTAAGCAGTAGTG
66 ACCACCCTAAGCAGTAGTC-GACTAGGTTGAAGATAT-CAGATTCTGTCACCCTAAGCAGTAGTG
* *
79760994 GAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGGGAACCAGATTTAAGCCATTAG
129 GAGCAGATCGAAGATGGTGAATCTCATCTTCCCAATACAGTGGAGAACCAGATTTAAGCCATTAG
* * * *
79761059 TCCAACCCCCCTAAGCAGTAGTGGAGTCGGTTGAAGATTACATATTTTGTCACCCTAAGAAGTAG
194 TCCAACCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAGAAGTAG
*
79761124 TGGAGCAGATCAAAGATGGTGATTCTTATCTTCCCAACACAGTGGAGAA
259 TGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCAACACAGTGGAGAA
* * *
79761173 AGATCGAAGATGGTGATTCTTATCTTCCCAACGCAGTGGAGAAGT-GCATTTAAGCCATTCA-TC
1 AGATCGAAGATGGTAAATCTTATCTTCCCAACACAGTGGAGAAGTAG-ATTTAAGCCATT-AGTC
*
79761236 CTACCACCCTAAGCAGTAGTCGACTAGGTTGAAGATATCAGATTCTGTCACCCTGAGCAGTAGTG
64 CTACCACCCTAAGCAGTAGTCGACTAGGTTGAAGATATCAGATTCTGTCACCCTAAGCAGTAGTG
* * *
79761301 GAGCAGATCGAATATGGTGAATCTCATCTTCCCAATACAGTTGAGAAGCAGATTTAAGCCATTAG
129 GAGCAGATCGAAGATGGTGAATCTCATCTTCCCAATACAGTGGAGAACCAGATTTAAGCCATTAG
* * * *
79761366 TCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAG
194 TCCAACCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAGAAGTAG
* *
79761431 TGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
259 TGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCAACACAGTGGAGAA
79761480 GCAGATTTAA
Statistics
Matches: 280, Mismatches: 23, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
306 1 0.00
307 276 0.99
308 3 0.01
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (307 bp):
AGATCGAAGATGGTAAATCTTATCTTCCCAACACAGTGGAGAAGTAGATTTAAGCCATTAGTCCT
ACCACCCTAAGCAGTAGTCGACTAGGTTGAAGATATCAGATTCTGTCACCCTAAGCAGTAGTGGA
GCAGATCGAAGATGGTGAATCTCATCTTCCCAATACAGTGGAGAACCAGATTTAAGCCATTAGTC
CAACCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAGAAGTAGTG
GAGCAGATCAAAGATGGTGAATCTTATCTTCCCAACACAGTGGAGAA
Found at i:79761280 original size:132 final size:132
Alignment explanation
Indices: 79761164--79763089 Score: 2453
Period size: 132 Copynumber: 14.6 Consensus size: 132
79761154 TTCCCAACAC
* * ** *
79761164 AGTGGAGAAAGATCGAAGATGGTGATTCTTATCTTCCCAACGCAGTGGAGAAG-TGCATTTAAGC
1 AGTGGAG-CAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAG-ATTTAAGC
* * * *
79761228 CATTCA-TCCTACCACCCTAAGCAGTAGTCGACTAGGTTGAAGATAT-CAGATTCTGTCACCCTG
64 CATT-AGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGAT-TGCAGATTCTGTCACCCTA
79761291 AGCAGT
127 AGCAGT
* * *
79761297 AGTGGAGCAGATCGAATATGGTGAATCTCATCTTCCCAATACAGTTGAGAAGCAGATTTAAGCCA
1 AGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCA
79761362 TTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCA
66 TTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCA
79761427 GT
131 GT
79761429 AGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCA
1 AGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCA
* * * * ** *
79761494 TTAGTCCAATCACCCTAAGTAGTAGTAGG-GTCGGTTGAAAATTATAGATTCTGTTACCCTAAGC
66 TTAGTCCTATCACCCTAAGCAGTAGT-GGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGC
79761558 AGT
130 AGT
79761561 AGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCA
1 AGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCA
* * *
79761626 TTAGTCCAATCACCCTAAGCAGTAGTGGAGTCGGTTGAAGATTGCAGATTCTGTCACCCTGAGCA
66 TTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCA
79761691 GT
131 GT
* ** * * * * * ** * * **
79761693 AGTGGAGTC-GGTTTAAGAT-TTCAGAT-TCTGTC-ACCCTAA-GCAGAAGTGATGCAGATCGAA
1 AGTGGAG-CAGATCGAAGATGGTGA-ATCT-TATCTTCCC-AATACAGTGGAGAAGCAGATTTAA
* * * * * * *
79761753 G--ATGGTAAATCATAT-ATTCCC-AA-TA-CAGTGGAGAAGAAGATGTAAGCCATT--AG-TCC
62 GCCAT--T-AGTCCTATCA--CCCTAAGCAGTAGTGGAGTAG--GTTG-AAG--ATTGCAGATTC
**
79761809 AATCACCCTAAGCAGT
117 TGTCACCCTAAGCAGT
* * * *
79761825 AGTGGAGCAGATCGAAGATGGTGAATCTTATCCTCCCAATACAGTGGGGAACCAGATTTAAACCA
1 AGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCA
* * * * * * *
79761890 TTAGTCCAATCCCCCTAAGCAGTAGTGGAGTCGGTTGAAGATTACATATTTTGTCACCCTAAGAA
66 TTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCA
79761955 GT
131 GT
* * *
79761957 AGTGGAGCAGATCGAAGATGGTGATTCTTATCTTCCCAACACAGTGGAGAAG-TGCATTTAAGCC
1 AGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAG-ATTTAAGCC
* * * *
79762021 ATTCA-TCCTACCACTCTAAGCAGTAGTCGAGTAGGTTGAAGATAT-CAGATTCTGTCACCCTGA
65 ATT-AGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGAT-TGCAGATTCTGTCACCCTAA
79762084 GCAGT
128 GCAGT
* * * *
79762089 AGCGGAGCAGATCGAATATGGTGAATCTCATCTTCCCAATACAGTTGAGAAGCAGATTTAAGCCA
1 AGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCA
* *
79762154 TTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTTTGTCACGCTAAGCA
66 TTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCA
79762219 GT
131 GT
79762221 AGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCA
1 AGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCA
*
79762286 TTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTTTGTCACCCTAAGCA
66 TTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCA
79762351 GT
131 GT
79762353 AGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCA
1 AGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCA
*
79762418 TTAGTCCTATCACCCTAAGCAGTAGCGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCA
66 TTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCA
79762483 GT
131 GT
* * * *
79762485 AGTGGAGCAGATCGAAGATGGTGAATCTTATCCTCCCAATACAGTGGGGAACCAGATTTAAACCA
1 AGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCA
* * * * * * *
79762550 TTAGTCCAATCCCCCTAAGCAGTAGTGGAGTCGGTTGAAGATTACATATTTTGTCACCCTAAGAA
66 TTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCA
79762615 GT
131 GT
* * *
79762617 AGTGGAGCAGATCGAAGATGGTGATTCTTATCTTCCCAACACAGTGGAGAAG-TGCATTTAAGCC
1 AGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAG-ATTTAAGCC
* * * *
79762681 ATTCA-TCCTACCACTCTAAGCAGTAGTCGAGTAGGTTGAAGATAT-CAGATTCTGTCACCCTGA
65 ATT-AGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGAT-TGCAGATTCTGTCACCCTAA
79762744 GCAGT
128 GCAGT
* * * *
79762749 AGCGGAGCAGATCGAATATGGTGAATCTCATCTTCCCAATACAGTTGAGAAGCAGATTTAAGCCA
1 AGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCA
* * *
79762814 TTAGTCCTATCACCCTAAGCAGTAGTGGAGTTGGTTGAAGATTGCAGATTCGGTCGCCCTAAGCA
66 TTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCA
79762879 GT
131 GT
* * * *
79762881 AGTGGAGTC-GATCGAACATGGTGAATCTTATCTTCCTAACACAGTTGAGAAGCAGATTTAAGCC
1 AGTGGAG-CAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCC
* **
79762945 ATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCACATTCTGTCACTTTAAGC
65 ATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGC
79763010 AGT
130 AGT
* * * * *
79763013 AGTGGAGCAGATCGAATATGATGAATCTTACCTTCCCAATACAGTAGAGAAGCAGATTTAAGCGA
1 AGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCA
* *
79763078 TCAGTACTATCA
66 TTAGTCCTATCA
79763090 NNNNNNNNNN
Statistics
Matches: 1561, Mismatches: 185, Indels: 95
0.85 0.10 0.05
Matches are distributed among these distances:
129 5 0.00
130 8 0.01
131 43 0.03
132 1445 0.93
133 47 0.03
134 8 0.01
135 5 0.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.26
Consensus pattern (132 bp):
AGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCA
TTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCA
GT
Found at i:79761283 original size:571 final size:570
Alignment explanation
Indices: 79760594--79761827 Score: 1752
Period size: 571 Copynumber: 2.2 Consensus size: 570
79760584 CCTAAGCATT
* * *
79760594 AGTGGAGCAGATCGAAGATGGTGAATCTTATGTTCCCAATACAGTGGAGAAGCAGATATAAGCCA
1 AGTGGAGAAGATCGAAGATGGTGAATCTTATCTTCCCAACACAGTGGAGAAGCAGATATAAGCCA
* *
79760659 TTAGTCCTACCACCCTAAGCAGTAGTCGAGTAGGTTGAAGATTGTAGATTCTGTCACCCACAGCA
66 TTAGTCCTACCACCCTAAGCAGTAGTCGACTAGGTTGAAGATTGCAGATTCTGTCACCCACAGCA
* * *
79760724 GTAGTGGAGTAGATCTAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
131 GTAGTGGAGCAGATCGAAGATGGTGAATCTCATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
* *
79760789 TATTAGTCCTATCACCCTAAGCAGCAGTGGAGTCA-GTTTAAAATTACAGATTCTGTCACCCTAA
196 CATTAGTCCTATCACCCTAAGCAGCAGTGGAGT-AGGTTGAAAATTACAGATTCTGTCACCCTAA
*
79760853 GCAGAAGT-GATGCAGATCGAAGATGGTAAATCTTATCTTCCCAATACAGTGGAGAAGTAGATTT
260 GCAGAAGTGGA-GCAGATCGAAGATGGTAAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTT
* * * *
79760917 AAGCCATTAGTCCTATCACCCTAAGCAGTAG-CGGAGTAGGTTGAAGATTGCAGATTCTGTCACC
324 AAGCCATTAGTCCAATCACCCTAAGCAGTAGTAGG-GTAGGTTGAAAATTACAGATTCTGTCACC
*
79760981 CTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGGGAACCAGA
388 CTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAACCAGA
* * *
79761046 TTTAAGCCATTAGTCCAACCCCCCTAAGCAGTAGTGGAGTCGGTTGAAGATTACATATTTTGTCA
453 TTTAAGCCATTAGTCCAACCACCCTAAGCAGTAGTGGAGTCGGTTGAAGATTACAGATTCTGTCA
79761111 CCCTAAGAAGTAGTGGAGCAGATCAAAGATGGTGATTCTTATCTTCCCAACAC
518 CCCTAAGAAGTAGTGGAGCAGATCAAAGATGGTGATTCTTATCTTCCCAACAC
* * * *
79761164 AGTGGAGAAAGATCGAAGATGGTGATTCTTATCTTCCCAACGCAGTGGAGAAG-TGCATTTAAGC
1 AGTGGAG-AAGATCGAAGATGGTGAATCTTATCTTCCCAACACAGTGGAGAAGCAG-ATATAAGC
**
79761228 CATTCA-TCCTACCACCCTAAGCAGTAGTCGACTAGGTTGAAGATAT-CAGATTCTGTCACCCTG
64 CATT-AGTCCTACCACCCTAAGCAGTAGTCGACTAGGTTGAAGAT-TGCAGATTCTGTCACCCAC
* *
79761291 AGCAGTAGTGGAGCAGATCGAATATGGTGAATCTCATCTTCCCAATACAGTTGAGAAGCAGATTT
127 AGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTCATCTTCCCAATACAGTGGAGAAGCAGATTT
* * *
79761356 AAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCC
192 AAGCCATTAGTCCTATCACCCTAAGCAGCAGTGGAGTAGGTTGAAAATTACAGATTCTGTCACCC
* *
79761421 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAT
257 TAAGCAGAAGTGGAGCAGATCGAAGATGGTAAATCTTATCTTCCCAATACAGTGGAGAAGCAGAT
* * * *
79761486 TTAAGCCATTAGTCCAATCACCCTAAGTAGTAGTAGGGTCGGTTGAAAATTATAGATTCTGTTAC
322 TTAAGCCATTAGTCCAATCACCCTAAGCAGTAGTAGGGTAGGTTGAAAATTACAGATTCTGTCAC
*
79761551 CCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAG
387 CCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAACCAG
* *
79761616 ATTTAAGCCATTAGTCCAATCACCCTAAGCAGTAGTGGAGTCGGTTGAAGATTGCAGATTCTGTC
452 ATTTAAGCCATTAGTCCAACCACCCTAAGCAGTAGTGGAGTCGGTTGAAGATTACAGATTCTGTC
* * * ** * * * *
79761681 ACCCTGAGCAGTAGTGGAGTC-GGTTTAAGAT-TTCAGATTC-TGTC-ACCCTAAGCAGA
517 ACCCTAAGAAGTAGTGGAG-CAGATCAAAGATGGT--GATTCTTATCTTCCC-AA-CA-C
* * * * * * *
79761737 AGT-GATGCAGATCGAAGATGGTAAATCATATATTCCCAATACAGTGGAGAAGAAGATGTAAGCC
1 AGTGGA-GAAGATCGAAGATGGTGAATCTTATCTTCCCAACACAGTGGAGAAGCAGATATAAGCC
* *
79761801 ATTAGTCCAATCACCCTAAGCAGTAGT
65 ATTAGTCCTACCACCCTAAGCAGTAGT
79761828 GGAGCAGATC
Statistics
Matches: 589, Mismatches: 59, Indels: 30
0.87 0.09 0.04
Matches are distributed among these distances:
570 13 0.02
571 486 0.83
572 85 0.14
573 5 0.01
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (570 bp):
AGTGGAGAAGATCGAAGATGGTGAATCTTATCTTCCCAACACAGTGGAGAAGCAGATATAAGCCA
TTAGTCCTACCACCCTAAGCAGTAGTCGACTAGGTTGAAGATTGCAGATTCTGTCACCCACAGCA
GTAGTGGAGCAGATCGAAGATGGTGAATCTCATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
CATTAGTCCTATCACCCTAAGCAGCAGTGGAGTAGGTTGAAAATTACAGATTCTGTCACCCTAAG
CAGAAGTGGAGCAGATCGAAGATGGTAAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAA
GCCATTAGTCCAATCACCCTAAGCAGTAGTAGGGTAGGTTGAAAATTACAGATTCTGTCACCCTA
AGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAACCAGATTT
AAGCCATTAGTCCAACCACCCTAAGCAGTAGTGGAGTCGGTTGAAGATTACAGATTCTGTCACCC
TAAGAAGTAGTGGAGCAGATCAAAGATGGTGATTCTTATCTTCCCAACAC
Found at i:79761289 original size:175 final size:175
Alignment explanation
Indices: 79760990--79761347 Score: 463
Period size: 175 Copynumber: 2.1 Consensus size: 175
79760980 CCTAAGCAGT
* * *
79760990 AGTGGAG-CAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGGGAACCAGATTTAAGCC
1 AGTGGAGAAAGATCGAAGATGGTGAATCTTATCTTCCCAACACAGTGGAGAACCAGATTTAAGCC
* * * * * *
79761054 ATTAGTCCAACCCCCCTAAGCAGTAGTGGAGTCGGTTGAAGATTACATATTTTGTCACCCTAAGA
66 ATTAGTCCAACCACCCTAAGCAGTAGTCGACTAGGTTGAAGATTACAGATTCTGTCACCCTAAGA
* *
79761119 AGTAGTGGAGCAGATCAAAGATGGTGATTCTTATCTTCCCAACAC
131 AGTAGTGGAGCAGATCAAAGATGGTGAATCTCATCTTCCCAACAC
* * **
79761164 AGTGGAGAAAGATCGAAGATGGTGATTCTTATCTTCCCAACGCAGTGGAGAA-GTGCATTTAAGC
1 AGTGGAGAAAGATCGAAGATGGTGAATCTTATCTTCCCAACACAGTGGAGAACCAG-ATTTAAGC
* *
79761228 CATTCA-TCCTACCACCCTAAGCAGTAGTCGACTAGGTTGAAGA-TATCAGATTCTGTCACCCTG
65 CATT-AGTCCAACCACCCTAAGCAGTAGTCGACTAGGTTGAAGATTA-CAGATTCTGTCACCCTA
* * * *
79761291 AGCAGTAGTGGAGCAGATCGAATATGGTGAATCTCATCTTCCCAATAC
128 AGAAGTAGTGGAGCAGATCAAAGATGGTGAATCTCATCTTCCCAACAC
*
79761339 AGTTGAGAA
1 AGTGGAGAA
79761348 GCAGATTTAA
Statistics
Matches: 158, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
174 10 0.06
175 147 0.93
176 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (175 bp):
AGTGGAGAAAGATCGAAGATGGTGAATCTTATCTTCCCAACACAGTGGAGAACCAGATTTAAGCC
ATTAGTCCAACCACCCTAAGCAGTAGTCGACTAGGTTGAAGATTACAGATTCTGTCACCCTAAGA
AGTAGTGGAGCAGATCAAAGATGGTGAATCTCATCTTCCCAACAC
Found at i:79761564 original size:439 final size:435
Alignment explanation
Indices: 79760726--79761831 Score: 1462
Period size: 439 Copynumber: 2.5 Consensus size: 435
79760716 CCACAGCAGT
* * *
79760726 AGTGGAG-TAGATCTAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAG-ATTTAAGC
1 AGTGGAGAAAGATCTAAGATGGTGAATCTTATCTTCCCAA-GCAGTGGAGAAG-TGCATTTAAGC
* *
79760789 TATT-AGTCCTATCACCCTAAGCAGCAGTGGAGTCA-GTTTAAAATTACAGATTCTGTCACCCTA
64 -ATTCA-TCCTATCACCCTAAGCAGTAGTGGAGT-AGGTTTAAGATT-CAGATTCTGTCACCCTA
*
79760852 AGCAGAAGTGATGCAGATCGAAGATGGTAAATCTTATCTTCCCAATACAGTGGAGAAGTAGATTT
125 AGCAGAAGTGATGCAGATCGAAGATGGTAAATC-TATCTTCCCAATACAGTGGAGAAGAAGATTT
*
79760917 AAGCCATTAGTCCTATCACCCTAAGCAGTAGCGGAGTAGGTTGAAGATTGCAGATTCTGTCACCC
189 AAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCC
*
79760982 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGGGAACCAGAT
254 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAACCAGAT
* * * *
79761047 TTAAGCCATTAGTCCAACCCCCCTAAGCAGTAGTGGAGTCGGTTGAAGATTACATATTTTGTCAC
319 TTAAGCCATTAGTCCAACCACCCTAAGCAGTAGTGGAGTCGGTTGAAAATTACAGATTCTGTCAC
*
79761112 CCTAAGAAGTAGTGGAGCAGATCAAAGATGGTGATTCTTATCTTCCCAACAC
384 CCTAAGAAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCAACAC
* *
79761164 AGTGGAGAAAGATCGAAGATGGTGATTCTTATCTTCCCAACGCAGTGGAGAAGTGCATTTAAGCC
1 AGTGGAGAAAGATCTAAGATGGTGAATCTTATCTTCCCAA-GCAGTGGAGAAGTGCATTTAAG-C
* * * * *
79761229 ATTCATCCTACCACCCTAAGCAGTAGTCGACTAGGTTGAAGATATCAGATTCTGTCACCCTGAGC
64 ATTCATCCTATCACCCTAAGCAGTAGTGGAGTAGGTTTAAGAT-TCAGATTCTGTCACCCTAAGC
* * * * *
79761294 AGTAGTGGA-GCAGATCGAATATGGTGAATCTCATCTTCCCAATACAGTTGAGAAGCAGATTTAA
128 AGAAGT-GATGCAGATCGAAGATGGTAAATCT-ATCTTCCCAATACAGTGGAGAAGAAGATTTAA
79761358 GCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTA
191 GCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTA
*
79761423 AGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTT
256 AGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAACCAGATTT
* * * *
79761488 AAGCCATTAGTCCAATCACCCTAAGTAGTAGTAGG-GTCGGTTGAAAATTATAGATTCTGTTACC
321 AAGCCATTAGTCCAACCACCCTAAGCAGTAGT-GGAGTCGGTTGAAAATTACAGATTCTGTCACC
* * *
79761552 CTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATAC
385 CTAAGAAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCAACAC
* * ** * * * * * *
79761603 AGTGGAGAAGCAGATTTAAGCCAT--T-AGTCCAATC-ACCCTAAGCAGTAGTGGAGT-CGGTTG
1 AGTGGAGAA--AGATCTAAG--ATGGTGAATCTTATCTTCCC-AAGCAGTGGAGAAGTGC-ATTT
* * * *
79761663 AAG-ATTGCAGATTCTGTCACCCTGAGCAGTAGTGGAGTCGGTTTAAGATTTCAGATTCTGTCAC
60 AAGCATT-C--ATCCTATCACCCTAAGCAGTAGTGGAGTAGGTTTAAGA-TTCAGATTCTGTCAC
*
79761727 CCTAAGCAGAAGTGATGCAGATCGAAGATGGTAAATCATATATTCCCAATACAGTGGAGAAGAAG
121 CCTAAGCAGAAGTGATGCAGATCGAAGATGGTAAATC-TATCTTCCCAATACAGTGGAGAAGAAG
* *
79761792 ATGTAAGCCATTAGTCCAATCACCCTAAGCAGTAGTGGAG
185 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAG
79761832 CAGATCGAAG
Statistics
Matches: 586, Mismatches: 61, Indels: 40
0.85 0.09 0.06
Matches are distributed among these distances:
437 3 0.01
438 12 0.02
439 409 0.70
440 150 0.26
441 10 0.02
443 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (435 bp):
AGTGGAGAAAGATCTAAGATGGTGAATCTTATCTTCCCAAGCAGTGGAGAAGTGCATTTAAGCAT
TCATCCTATCACCCTAAGCAGTAGTGGAGTAGGTTTAAGATTCAGATTCTGTCACCCTAAGCAGA
AGTGATGCAGATCGAAGATGGTAAATCTATCTTCCCAATACAGTGGAGAAGAAGATTTAAGCCAT
TAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAG
TAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAACCAGATTTAAGCC
ATTAGTCCAACCACCCTAAGCAGTAGTGGAGTCGGTTGAAAATTACAGATTCTGTCACCCTAAGA
AGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCAACAC
Found at i:79761655 original size:88 final size:88
Alignment explanation
Indices: 79761549--79761919 Score: 373
Period size: 88 Copynumber: 4.2 Consensus size: 88
79761539 AGATTCTGTT
79761549 ACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGC
1 ACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGC
79761614 AGATTTAAGCCATTAGTCCAATC
66 AGATTTAAGCCATTAGTCCAATC
* * ** * * * * *
79761637 ACCCTAAGCAGTAGTGGAGTC-GGTTGAAGATTGCAGATTC-TGTC-ACCC--TGAGCAGTAGTG
1 ACCCTAAGCAGTAGTGGAG-CAGATCGAAGA-TGGTGAATCTTATCTTCCCAAT-A-CAGTGGAG
* * * **
79761697 GAGTC-GGTTTAAG--ATTTCAGATTCTGTC
62 AAG-CAGATTTAAGCCA-TT-AG-TCCAATC
* * * *
79761725 ACCCTAAGCAGAAGT-GATGCAGATCGAAGATGGTAAATCATATATTCCCAATACAGTGGAGAAG
1 ACCCTAAGCAGTAGTGGA-GCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG
* *
79761789 AAGATGTAAGCCATTAGTCCAATC
65 CAGATTTAAGCCATTAGTCCAATC
* * *
79761813 ACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCCTCCCAATACAGTGGGGAACC
1 ACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGC
*
79761878 AGATTTAAACCATTAGTCCAATC
66 AGATTTAAGCCATTAGTCCAATC
*
79761901 CCCCTAAGCAGTAGTGGAG
1 ACCCTAAGCAGTAGTGGAG
79761920 TCGGTTGAAG
Statistics
Matches: 221, Mismatches: 44, Indels: 36
0.73 0.15 0.12
Matches are distributed among these distances:
85 2 0.01
86 3 0.01
87 28 0.13
88 155 0.70
89 28 0.13
90 3 0.01
91 2 0.01
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (88 bp):
ACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGC
AGATTTAAGCCATTAGTCCAATC
Found at i:79761685 original size:44 final size:44
Alignment explanation
Indices: 79761635--79761740 Score: 176
Period size: 44 Copynumber: 2.4 Consensus size: 44
79761625 ATTAGTCCAA
79761635 TCACCCTAAGCAGTAGTGGAGTCGGTTGAAGATTGCAGATTCTG
1 TCACCCTAAGCAGTAGTGGAGTCGGTTGAAGATTGCAGATTCTG
* * *
79761679 TCACCCTGAGCAGTAGTGGAGTCGGTTTAAGATTTCAGATTCTG
1 TCACCCTAAGCAGTAGTGGAGTCGGTTGAAGATTGCAGATTCTG
*
79761723 TCACCCTAAGCAGAAGTG
1 TCACCCTAAGCAGTAGTG
79761741 ATGCAGATCG
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 57 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (44 bp):
TCACCCTAAGCAGTAGTGGAGTCGGTTGAAGATTGCAGATTCTG
Found at i:79761705 original size:176 final size:176
Alignment explanation
Indices: 79761503--79761831 Score: 511
Period size: 176 Copynumber: 1.9 Consensus size: 176
79761493 ATTAGTCCAA
* * *
79761503 TCACCCTAAGTAGTAGTAGGGTCGGTTGAAAATTAT-AGATTCTGTTACCCTAAGCAGTAGTGGA
1 TCACCCTAAGCAGTAGTAGGGTCGGTTGAAAATT-TCAGATTCTGTCACCCTAAGCAGAAGT-GA
* * * * *
79761567 -GCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGT
64 TGCAGATCGAAGATGGTAAATCATATATTCCCAATACAGTGGAGAAGAAGATGTAAGCCATTAGT
79761631 CCAATCACCCTAAGCAGTAGTGGAGTCGGTTGAAGATTGCAGATTCTG
129 CCAATCACCCTAAGCAGTAGTGGAGTCGGTTGAAGATTGCAGATTCTG
* * *
79761679 TCACCCTGAGCAGTAGT-GGAGTCGGTTTAAGATTTCAGATTCTGTCACCCTAAGCAGAAGTGAT
1 TCACCCTAAGCAGTAGTAGG-GTCGGTTGAAAATTTCAGATTCTGTCACCCTAAGCAGAAGTGAT
79761743 GCAGATCGAAGATGGTAAATCATATATTCCCAATACAGTGGAGAAGAAGATGTAAGCCATTAGTC
65 GCAGATCGAAGATGGTAAATCATATATTCCCAATACAGTGGAGAAGAAGATGTAAGCCATTAGTC
79761808 CAATCACCCTAAGCAGTAGTGGAG
130 CAATCACCCTAAGCAGTAGTGGAG
79761832 CAGATCGAAG
Statistics
Matches: 139, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
175 5 0.04
176 134 0.96
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (176 bp):
TCACCCTAAGCAGTAGTAGGGTCGGTTGAAAATTTCAGATTCTGTCACCCTAAGCAGAAGTGATG
CAGATCGAAGATGGTAAATCATATATTCCCAATACAGTGGAGAAGAAGATGTAAGCCATTAGTCC
AATCACCCTAAGCAGTAGTGGAGTCGGTTGAAGATTGCAGATTCTG
Found at i:79762238 original size:44 final size:43
Alignment explanation
Indices: 79762161--79762516 Score: 210
Period size: 44 Copynumber: 8.1 Consensus size: 43
79762151 CCATTAGTCC
* * *
79762161 TATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTT
1 TATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTG-AGATCT
* * *
79762205 TGTCACGCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGA-ATCT
1 TATCACCCTAAGCAGTAGTGGAGCAGATTGAAGAT--TGAGATCT
* * * * * * *
79762249 TATCTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCATT-AG-TCC
1 TATC-ACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGAGATCT
* * *
79762293 TATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTT
1 TATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTG-AGATCT
* *
79762337 TGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGA-ATCT
1 TATCACCCTAAGCAGTAGTGGAGCAGATTGAAGAT--TGAGATCT
* * * * * * *
79762381 TATCTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCATT-AG-TCC
1 TATC-ACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGAGATCT
* * *
79762425 TATCACCCTAAGCAGTAGCGGAGTAGGTTGAAGATTGCAGAT-T
1 TATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTG-AGATCT
* *
79762468 CTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGA-ATCT
1 -TATCACCCTAAGCAGTAGTGGAGCAGATTGAAGAT--TGAGATCT
79762513 TATC
1 TATC
79762517 CTCCCAATAC
Statistics
Matches: 231, Mismatches: 55, Indels: 52
0.68 0.16 0.15
Matches are distributed among these distances:
41 6 0.03
43 40 0.17
44 132 0.57
45 43 0.19
46 6 0.03
47 4 0.02
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (43 bp):
TATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGAGATCT
Found at i:79765620 original size:18 final size:18
Alignment explanation
Indices: 79765599--79765634 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
79765589 AAAAGGAAAT
*
79765599 ATATAAGGGTTAGGATAC
1 ATATAAGGGCTAGGATAC
79765617 ATATAAGGGCTAGGATAC
1 ATATAAGGGCTAGGATAC
79765635 GCACCTGGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.39, C:0.08, G:0.28, T:0.25
Consensus pattern (18 bp):
ATATAAGGGCTAGGATAC
Found at i:79767222 original size:19 final size:20
Alignment explanation
Indices: 79767200--79767238 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
79767190 ATTAATTAAA
*
79767200 ATTATATAA-ATGAAAAAAT
1 ATTAAATAATATGAAAAAAT
*
79767219 ATTAAATAATATTAAAAAAT
1 ATTAAATAATATGAAAAAAT
79767239 TAAAATTAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (20 bp):
ATTAAATAATATGAAAAAAT
Found at i:79767222 original size:25 final size:24
Alignment explanation
Indices: 79767173--79767224 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 24
79767163 ATTGTTATAA
* *
79767173 AAAATTATAAAATACAAATTAATT
1 AAAATTATAAAATAAAAAATAATT
79767197 AAAATTATATAAATGAAAAAAT-ATT
1 AAAATTATA-AAAT-AAAAAATAATT
79767222 AAA
1 AAA
79767225 TAATATTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 9 0.38
25 10 0.42
26 5 0.21
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (24 bp):
AAAATTATAAAATAAAAAATAATT
Found at i:79767461 original size:29 final size:30
Alignment explanation
Indices: 79767399--79767462 Score: 103
Period size: 29 Copynumber: 2.2 Consensus size: 30
79767389 ATTAATTAAA
79767399 GAGAGCGTTGAGAAATTTAAGGAGAAATTT
1 GAGAGCGTTGAGAAATTTAAGGAGAAATTT
* *
79767429 GAGAGCTTTGAGAAA-TTAGGGAGAAATTT
1 GAGAGCGTTGAGAAATTTAAGGAGAAATTT
79767458 GAGAG
1 GAGAG
79767463 TTTTTTGCCA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 18 0.56
30 14 0.44
ACGTcount: A:0.39, C:0.03, G:0.33, T:0.25
Consensus pattern (30 bp):
GAGAGCGTTGAGAAATTTAAGGAGAAATTT
Found at i:79771958 original size:22 final size:22
Alignment explanation
Indices: 79771930--79771974 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
79771920 GTTTTGGTAC
79771930 AGGTAAGTTCGTATAAGGATTA
1 AGGTAAGTTCGTATAAGGATTA
79771952 AGGTAAGTTCGTATAAGGATTA
1 AGGTAAGTTCGTATAAGGATTA
79771974 A
1 A
79771975 CTTGTTAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.38, C:0.04, G:0.27, T:0.31
Consensus pattern (22 bp):
AGGTAAGTTCGTATAAGGATTA
Found at i:79778289 original size:35 final size:36
Alignment explanation
Indices: 79778197--79778295 Score: 105
Period size: 37 Copynumber: 2.8 Consensus size: 36
79778187 AGTTATTGAT
* *
79778197 GTTCTGATTTA-CATGTTAAACATGTTAATATTCTGA
1 GTTCTGA-TTAGCATGTTAAGCATGCTAATATTCTGA
* * *
79778233 TGTTCCGATTCGCGTGTTAAGCATGCT-ATATTTCTGA
1 -GTTCTGATTAGCATGTTAAGCATGCTAATA-TTCTGA
79778270 -TTCTGATTAGCATGTTAAGCATGCTA
1 GTTCTGATTAGCATGTTAAGCATGCTA
79778296 CTGTGATAAA
Statistics
Matches: 51, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
35 22 0.43
36 5 0.10
37 24 0.47
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.41
Consensus pattern (36 bp):
GTTCTGATTAGCATGTTAAGCATGCTAATATTCTGA
Found at i:79784255 original size:30 final size:29
Alignment explanation
Indices: 79784221--79784282 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 29
79784211 AGGCTAAATA
** *
79784221 AGGCCTATAGGTTGATTTTGAAATTTATTT
1 AGGCCTATAGGCCGATTTT-AAAATTATTT
*
79784251 AGGCCTTTAGGCCGATTTTAAAATTATTT
1 AGGCCTATAGGCCGATTTTAAAATTATTT
79784280 AGG
1 AGG
79784283 AAAATAGGCC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 12 0.43
30 16 0.57
ACGTcount: A:0.27, C:0.10, G:0.21, T:0.42
Consensus pattern (29 bp):
AGGCCTATAGGCCGATTTTAAAATTATTT
Found at i:79792041 original size:18 final size:18
Alignment explanation
Indices: 79792008--79792060 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
79791998 ATTTACCTAA
*
79792008 ACCCAATCCAAACCCAAGT
1 ACCCAA-CCCAACCCAAGT
** *
79792027 ATTCAACCCAACCCAATT
1 ACCCAACCCAACCCAAGT
79792045 ACCCAACCCAACCCAA
1 ACCCAACCCAACCCAA
79792061 TCATAAAAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
18 24 0.86
19 4 0.14
ACGTcount: A:0.42, C:0.45, G:0.02, T:0.11
Consensus pattern (18 bp):
ACCCAACCCAACCCAAGT
Found at i:79826069 original size:17 final size:17
Alignment explanation
Indices: 79826044--79826077 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
79826034 ATAATAAGCA
* *
79826044 AAGTTTAATATTTAAAT
1 AAGTATAATATATAAAT
79826061 AAGTATAATATATAAAT
1 AAGTATAATATATAAAT
79826078 TCTACTTTGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (17 bp):
AAGTATAATATATAAAT
Found at i:79826968 original size:41 final size:41
Alignment explanation
Indices: 79826914--79827117 Score: 291
Period size: 41 Copynumber: 5.0 Consensus size: 41
79826904 TTAATTAAAA
* * *
79826914 CAGATTCAACGGCACTTAGCCTGCTAAGCTTAAAGTCTGATT
1 CAGA-TCACCGGCACTTAGCCTGCTAGGCTTAAAGCCTGATT
*
79826956 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTAAAGCCTGATT
* *
79826997 CAGTTCACCGGCACTTAGCCTGCTAGGCTTAAAGCTTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTAAAGCCTGATT
** *
79827038 CAGATCGTCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTAAAGCCTGATT
* * *
79827079 CAGTTCACCGGCACTTAGCTTGCTAGGCTTTAAGCCTGA
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTAAAGCCTGA
79827118 ATTGATTCAC
Statistics
Matches: 144, Mismatches: 18, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
41 140 0.97
42 4 0.03
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.28
Consensus pattern (41 bp):
CAGATCACCGGCACTTAGCCTGCTAGGCTTAAAGCCTGATT
Found at i:79827060 original size:82 final size:83
Alignment explanation
Indices: 79826918--79827117 Score: 325
Period size: 82 Copynumber: 2.4 Consensus size: 83
79826908 TTAAAACAGA
* *
79826918 TTCAACGGCACTTAGCCTGCTAAGCTTAAAG-TCTGATTCAGATCACCGGCACTTAGCCTGCTAG
1 TTCACCGGCACTTAGCCTGCTAGGCTTAAAGCTCTGATTCAGATCACCGGCACTTAGCCTGCTAG
79826982 GCTTATAGCCTGATTCAG
66 GCTTATAGCCTGATTCAG
**
79827000 TTCACCGGCACTTAGCCTGCTAGGCTTAAAGCT-TGATTCAGATCGTCGGCACTTAGCCTGCTAG
1 TTCACCGGCACTTAGCCTGCTAGGCTTAAAGCTCTGATTCAGATCACCGGCACTTAGCCTGCTAG
79827064 GCTTATAGCCTGATTCAG
66 GCTTATAGCCTGATTCAG
* *
79827082 TTCACCGGCACTTAGCTTGCTAGGCTTTAAGC-CTGA
1 TTCACCGGCACTTAGCCTGCTAGGCTTAAAGCTCTGA
79827118 ATTGATTCAC
Statistics
Matches: 110, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
82 109 0.99
83 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.29
Consensus pattern (83 bp):
TTCACCGGCACTTAGCCTGCTAGGCTTAAAGCTCTGATTCAGATCACCGGCACTTAGCCTGCTAG
GCTTATAGCCTGATTCAG
Found at i:79827127 original size:41 final size:40
Alignment explanation
Indices: 79826916--79827147 Score: 222
Period size: 41 Copynumber: 5.7 Consensus size: 40
79826906 AATTAAAACA
* * * *
79826916 GATTCAACGGCACTTAGCCTGCTAAGCTTAAAGTCTGATT
1 GATTCACCGGCACTTAGCCTGCTAGGCTTTAAGCCTGATT
79826956 CAGA-TCACCGGCACTTAGCCTGCTAGGC-TTATAGCCTGATT
1 --GATTCACCGGCACTTAGCCTGCTAGGCTTTA-AGCCTGATT
* * *
79826997 CAGTTCACCGGCACTTAGCCTGCTAGGCTTAAAGCTTGATT
1 GA-TTCACCGGCACTTAGCCTGCTAGGCTTTAAGCCTGATT
**
79827038 CAGA-TCGTCGGCACTTAGCCTGCTAGGC-TTATAGCCTGATT
1 --GATTCACCGGCACTTAGCCTGCTAGGCTTTA-AGCCTGATT
* *
79827079 CAGTTCACCGGCACTTAGCTTGCTAGGCTTTAAGCCTGAATT
1 GA-TTCACCGGCACTTAGCCTGCTAGGCTTTAAGCCTG-ATT
* *
79827121 GATTCACTGGCAATATA-CCTGCTAGGC
1 GATTCACCGGCACT-TAGCCTGCTAGGC
79827148 GCTGAGCCTG
Statistics
Matches: 158, Mismatches: 20, Indels: 25
0.78 0.10 0.12
Matches are distributed among these distances:
39 2 0.01
40 4 0.03
41 138 0.87
42 13 0.08
43 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GATTCACCGGCACTTAGCCTGCTAGGCTTTAAGCCTGATT
Found at i:79827142 original size:82 final size:81
Alignment explanation
Indices: 79826918--79827147 Score: 304
Period size: 82 Copynumber: 2.8 Consensus size: 81
79826908 TTAAAACAGA
* * * *
79826918 TTCAACGGCACTTAGCCTGCTAAGCTTAAAGTCTGATTCAGATCACCGGCACTTAGCCTGCTAGG
1 TTCACCGGCACTTAGCCTGCTAGGCTTAAAGCCTGATT-AGATCACTGGCACTTAGCCTGCTAGG
79826983 CTTATAGCCTGATTCAG
65 CTTATAGCCTGATTCAG
* *
79827000 TTCACCGGCACTTAGCCTGCTAGGCTTAAAGCTTGATTCAGATC-GTCGGCACTTAGCCTGCTAG
1 TTCACCGGCACTTAGCCTGCTAGGCTTAAAGCCTGATT-AGATCACT-GGCACTTAGCCTGCTAG
79827064 GCTTATAGCCTGATTCAG
64 GCTTATAGCCTGATTCAG
* * *
79827082 TTCACCGGCACTTAGCTTGCTAGGCTTTAAGCCTGAATT-GATTCACTGGCAATATA-CCTGCTA
1 TTCACCGGCACTTAGCCTGCTAGGCTTAAAGCCTG-ATTAGA-TCACTGGCACT-TAGCCTGCTA
79827145 GGC
63 GGC
79827148 GCTGAGCCTG
Statistics
Matches: 132, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
81 2 0.02
82 124 0.94
83 6 0.05
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.29
Consensus pattern (81 bp):
TTCACCGGCACTTAGCCTGCTAGGCTTAAAGCCTGATTAGATCACTGGCACTTAGCCTGCTAGGC
TTATAGCCTGATTCAG
Found at i:79827142 original size:123 final size:123
Alignment explanation
Indices: 79826923--79827147 Score: 330
Period size: 123 Copynumber: 1.8 Consensus size: 123
79826913 ACAGATTCAA
*
79826923 CGGCACTTAGCCTGCTAAGCTTAAAGTCTGATTCAGATCACCGGCACTTAGCCTGCTAGGCTTAT
1 CGGCACTTAGCCTGCTAAGCTTAAAGCCTGATTCAGATCACCGGCACTTAGCCTGCTAGGCTTAT
*
79826988 AGCCTGATTCAGTTCACCGGCACTTAGCCTGCTAGGCTTAAAGCTTGATTCAGATCGT
66 AGCCTGATTCAGTTCACCGGCAATTAGCCTGCTAGGCTTAAAGCTTGATTCAGATCGT
* * * *
79827046 CGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGTTCACCGGCACTTAGCTTGCTAGGCTT-T
1 CGGCACTTAGCCTGCTAAGCTTAAAGCCTGATTCAGATCACCGGCACTTAGCCTGCTAGGCTTAT
* *
79827110 AAGCCTGAATTGA-TTCACTGGCAATATA-CCTGCTAGGC
66 -AGCCTG-ATTCAGTTCACCGGCAAT-TAGCCTGCTAGGC
79827148 GCTGAGCCTG
Statistics
Matches: 91, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
122 1 0.01
123 84 0.92
124 6 0.07
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.29
Consensus pattern (123 bp):
CGGCACTTAGCCTGCTAAGCTTAAAGCCTGATTCAGATCACCGGCACTTAGCCTGCTAGGCTTAT
AGCCTGATTCAGTTCACCGGCAATTAGCCTGCTAGGCTTAAAGCTTGATTCAGATCGT
Found at i:79829515 original size:19 final size:19
Alignment explanation
Indices: 79829493--79829575 Score: 76
Period size: 19 Copynumber: 4.4 Consensus size: 19
79829483 GTGTGGGTTT
* *
79829493 ATGCACCTCGTGTGCCAAG
1 ATGCACTTCATGTGCCAAG
* *
79829512 ATGCTCTTCATGTGCCAGG
1 ATGCACTTCATGTGCCAAG
* * *
79829531 ATGCGCTTCAAGTGCCAGG
1 ATGCACTTCATGTGCCAAG
* * *
79829550 ATGCGCTTCGTGTGCCAAT
1 ATGCACTTCATGTGCCAAG
79829569 ATGCACT
1 ATGCACT
79829576 ATGTGTGTCA
Statistics
Matches: 53, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 53 1.00
ACGTcount: A:0.19, C:0.28, G:0.27, T:0.27
Consensus pattern (19 bp):
ATGCACTTCATGTGCCAAG
Found at i:79830042 original size:24 final size:24
Alignment explanation
Indices: 79830015--79830064 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
79830005 ACTATTTAAT
*
79830015 AATATCAAATAATCAAATATTCTC
1 AATATCAAATAATCAAAGATTCTC
*
79830039 AATATCAAATAATCGAAGATTCTC
1 AATATCAAATAATCAAAGATTCTC
79830063 AA
1 AA
79830065 CACTCCTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.16, G:0.04, T:0.30
Consensus pattern (24 bp):
AATATCAAATAATCAAAGATTCTC
Found at i:79834633 original size:8 final size:9
Alignment explanation
Indices: 79834612--79834636 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
79834602 GTTTTTGAAA
79834612 AAAAATCCC
1 AAAAATCCC
79834621 AAAAATCCC
1 AAAAATCCC
79834630 AAAAATC
1 AAAAATC
79834637 GGATAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.60, C:0.28, G:0.00, T:0.12
Consensus pattern (9 bp):
AAAAATCCC
Found at i:79841583 original size:22 final size:22
Alignment explanation
Indices: 79841549--79841603 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
79841539 TTAATAAATG
79841549 TTTTTATA-A-TTCTCT-AATTT
1 TTTTTATATATTTCT-TGAATTT
79841569 TTTTTATATATTTCTTGAATTT
1 TTTTTATATATTTCTTGAATTT
* *
79841591 TATTTATTTATTT
1 TTTTTATATATTT
79841604 ATAAATCTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 8 0.27
21 2 0.07
22 20 0.67
ACGTcount: A:0.24, C:0.05, G:0.02, T:0.69
Consensus pattern (22 bp):
TTTTTATATATTTCTTGAATTT
Found at i:79842220 original size:20 final size:20
Alignment explanation
Indices: 79842175--79842215 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
79842165 ACTCCTTTAT
79842175 TTATATAAATAAAATAATAA
1 TTATATAAATAAAATAATAA
79842195 TTATAT-AATAAAA-AAT-A
1 TTATATAAATAAAATAATAA
79842212 TTAT
1 TTAT
79842216 TATATTTATC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 5 0.24
18 3 0.14
19 7 0.33
20 6 0.29
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
TTATATAAATAAAATAATAA
Found at i:79842240 original size:21 final size:18
Alignment explanation
Indices: 79842216--79842254 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 18
79842206 AAAATATTAT
79842216 TATATTTATCATTATTTTAAA
1 TATATTT-T-ATT-TTTTAAA
79842237 TATATTTTATTTTTTAAA
1 TATATTTTATTTTTTAAA
79842255 AAACATCAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.39
19 3 0.17
20 1 0.06
21 7 0.39
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (18 bp):
TATATTTTATTTTTTAAA
Found at i:79842510 original size:15 final size:15
Alignment explanation
Indices: 79842492--79842566 Score: 71
Period size: 15 Copynumber: 4.9 Consensus size: 15
79842482 TCAAATGCAC
79842492 ATATAAAAATATACA
1 ATATAAAAATATACA
*
79842507 ATATTAAAATATACA
1 ATATAAAAATATACA
* *
79842522 ATATACAATATATTAAA
1 ATATA-AAAATA-TACA
* *
79842539 AAATAAATAT-TACA
1 ATATAAAAATATACA
79842553 CATATAAAAATATA
1 -ATATAAAAATATA
79842567 ATAATATTTG
Statistics
Matches: 48, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
14 3 0.06
15 26 0.54
16 12 0.25
17 7 0.15
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.31
Consensus pattern (15 bp):
ATATAAAAATATACA
Found at i:79842524 original size:7 final size:7
Alignment explanation
Indices: 79842499--79842533 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
79842489 CACATATAAA
79842499 AATATAC
1 AATATAC
*
79842506 AATATTAA
1 AATA-TAC
79842514 AATATAC
1 AATATAC
79842521 AATATAC
1 AATATAC
79842528 AATATA
1 AATATA
79842534 TTAAAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 19 0.76
8 6 0.24
ACGTcount: A:0.60, C:0.09, G:0.00, T:0.31
Consensus pattern (7 bp):
AATATAC
Found at i:79842526 original size:22 final size:22
Alignment explanation
Indices: 79842498--79842567 Score: 79
Period size: 23 Copynumber: 3.1 Consensus size: 22
79842488 GCACATATAA
79842498 AAATATACA-ATATTAAAATAT
1 AAATATACACATATTAAAATAT
* *
79842519 ACAATATACAATATATTAAAAAAT
1 A-AATATAC-ACATATTAAAATAT
*
79842543 AAATATTACACATATAAAAATAT
1 AAATA-TACACATATTAAAATAT
79842566 AA
1 AA
79842568 TAATATTTGC
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
21 1 0.02
22 7 0.17
23 18 0.44
24 15 0.37
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (22 bp):
AAATATACACATATTAAAATAT
Found at i:79846813 original size:19 final size:19
Alignment explanation
Indices: 79846786--79846834 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
79846776 TGAAAAAAAC
* *
79846786 AACAATAAAATAGCAACAA
1 AACAGTAAAACAGCAACAA
*
79846805 AACAGTAAAAACAGCAAGAA
1 AACAGT-AAAACAGCAACAA
*
79846825 AATAGTAAAA
1 AACAGTAAAA
79846835 AAATAATAGT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 9 0.36
20 16 0.64
ACGTcount: A:0.67, C:0.12, G:0.10, T:0.10
Consensus pattern (19 bp):
AACAGTAAAACAGCAACAA
Found at i:79846820 original size:20 final size:20
Alignment explanation
Indices: 79846792--79846835 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
79846782 AAACAACAAT
*
79846792 AAAATAGCAACAAAACAGTA
1 AAAACAGCAACAAAACAGTA
* *
79846812 AAAACAGCAAGAAAATAGTA
1 AAAACAGCAACAAAACAGTA
79846832 AAAA
1 AAAA
79846836 AATAATAGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.68, C:0.11, G:0.11, T:0.09
Consensus pattern (20 bp):
AAAACAGCAACAAAACAGTA
Found at i:79847692 original size:19 final size:19
Alignment explanation
Indices: 79847664--79847700 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
79847654 CAATTAAGTT
* *
79847664 AAATTTAAATTGTTTTTTA
1 AAATTAAAATAGTTTTTTA
79847683 AAATTAAAATAGTTTTTT
1 AAATTAAAATAGTTTTTT
79847701 CATTCATAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (19 bp):
AAATTAAAATAGTTTTTTA
Found at i:79852856 original size:42 final size:40
Alignment explanation
Indices: 79852797--79852934 Score: 137
Period size: 42 Copynumber: 3.5 Consensus size: 40
79852787 ACCCCTTGGG
* *
79852797 GGAATCAGCACTTAGCAACCCCCTTCACATTTCAGATGCGGT
1 GGAATCAGCACTTAGCAACCCCCTTCACATTT-AAAT-AGGT
* *
79852839 GGAATCAGCACTTAGCAA-CCAC--CA-A--TGAATAGG-
1 GGAATCAGCACTTAGCAACCCCCTTCACATTTAAATAGGT
*
79852872 GGAATCAGCACTTAGCATCCCCCTTTCACATTTAAAATATGGT
1 GGAATCAGCACTTAGCAACCCCC-TTCACATTT-AAATA-GGT
79852915 GGAATCAGCACTTAGCAACC
1 GGAATCAGCACTTAGCAACC
79852935 ACCAATGAAT
Statistics
Matches: 78, Mismatches: 8, Indels: 19
0.74 0.08 0.18
Matches are distributed among these distances:
33 17 0.22
34 5 0.06
35 2 0.03
36 1 0.01
37 2 0.03
38 2 0.03
39 2 0.03
40 1 0.01
41 7 0.09
42 20 0.26
43 19 0.24
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.22
Consensus pattern (40 bp):
GGAATCAGCACTTAGCAACCCCCTTCACATTTAAATAGGT
Found at i:79852881 original size:33 final size:33
Alignment explanation
Indices: 79852839--79852967 Score: 105
Period size: 33 Copynumber: 3.6 Consensus size: 33
79852829 CAGATGCGGT
79852839 GGAATCAGCACTTAGCAACCACCAATGAATAGG
1 GGAATCAGCACTTAGCAACCACCAATGAATAGG
* * *
79852872 GGAATCAGCACTTAGCATCCCCCTTTCACATTTAAAATATGG
1 GGAATCAGCACTTAGCA-ACCAC---CA-A--T-GAATA-GG
*
79852914 TGGAATCAGCACTTAGCAACCACCAATGAATCGG
1 -GGAATCAGCACTTAGCAACCACCAATGAATAGG
* **
79852948 GAAATCAGCACACAGCAACC
1 GGAATCAGCACTTAGCAACC
79852968 CCTTTATATG
Statistics
Matches: 76, Mismatches: 10, Indels: 20
0.72 0.09 0.19
Matches are distributed among these distances:
33 34 0.45
34 5 0.07
35 3 0.04
36 1 0.01
37 2 0.03
38 2 0.03
39 2 0.03
40 1 0.01
41 4 0.05
42 5 0.07
43 17 0.22
ACGTcount: A:0.36, C:0.27, G:0.18, T:0.19
Consensus pattern (33 bp):
GGAATCAGCACTTAGCAACCACCAATGAATAGG
Found at i:79852887 original size:75 final size:76
Alignment explanation
Indices: 79852795--79852969 Score: 262
Period size: 76 Copynumber: 2.3 Consensus size: 76
79852785 CAACCCCTTG
* * *
79852795 GGGGAATCAGCACTTAGCAACCCCC-TTCACATTTCAGATGCGGTGGAATCAGCACTTAGCAACC
1 GGGGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACC
79852859 ACCAATGAATA
66 ACCAATGAATA
* *
79852870 GGGGAATCAGCACTTAGCATCCCCCTTTCACATTTAAAATATGGTGGAATCAGCACTTAGCAACC
1 GGGGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACC
*
79852935 ACCAATGAATC
66 ACCAATGAATA
* **
79852946 GGGAAATCAGCACACAGCAACCCC
1 GGGGAATCAGCACTTAGCAACCCC
79852970 TTTATATGCA
Statistics
Matches: 89, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
75 24 0.27
76 65 0.73
ACGTcount: A:0.33, C:0.29, G:0.19, T:0.19
Consensus pattern (76 bp):
GGGGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACC
ACCAATGAATA
Found at i:79854319 original size:36 final size:36
Alignment explanation
Indices: 79854272--79854353 Score: 128
Period size: 36 Copynumber: 2.3 Consensus size: 36
79854262 ATGGTCTGAC
* *
79854272 TCTTCTTCCTCAACCGCATTTTCTTCCTCACCTGCA
1 TCTTCTTCCTCAACCGCATCTTCTTCCTCACCTACA
*
79854308 TCTTCTTCCTCAACTGCATCTTCTTCCTCACCTACA
1 TCTTCTTCCTCAACCGCATCTTCTTCCTCACCTACA
*
79854344 ACTTCTTCCT
1 TCTTCTTCCT
79854354 TGGTCACATC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 42 1.00
ACGTcount: A:0.15, C:0.41, G:0.04, T:0.40
Consensus pattern (36 bp):
TCTTCTTCCTCAACCGCATCTTCTTCCTCACCTACA
Found at i:79854348 original size:18 final size:18
Alignment explanation
Indices: 79854272--79854353 Score: 112
Period size: 18 Copynumber: 4.6 Consensus size: 18
79854262 ATGGTCTGAC
79854272 TCTTCTTCCTCAACC-GCA
1 TCTTCTTCCTC-ACCTGCA
*
79854290 TTTTCTTCCTCACCTGCA
1 TCTTCTTCCTCACCTGCA
*
79854308 TCTTCTTCCTCAACTGCA
1 TCTTCTTCCTCACCTGCA
*
79854326 TCTTCTTCCTCACCTACA
1 TCTTCTTCCTCACCTGCA
*
79854344 ACTTCTTCCT
1 TCTTCTTCCT
79854354 TGGTCACATC
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
17 3 0.05
18 54 0.95
ACGTcount: A:0.15, C:0.41, G:0.04, T:0.40
Consensus pattern (18 bp):
TCTTCTTCCTCACCTGCA
Found at i:79856986 original size:25 final size:25
Alignment explanation
Indices: 79856952--79857003 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
79856942 CTAATTTTTT
* *
79856952 TTAAAAAAATGACTTATA-AGACTAA
1 TTAAAAAAATAACATATATA-ACTAA
79856977 TTAAAAAAATAACATATATAACTAA
1 TTAAAAAAATAACATATATAACTAA
79857002 TT
1 TT
79857004 TAGCCTAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 23 0.96
26 1 0.04
ACGTcount: A:0.58, C:0.08, G:0.04, T:0.31
Consensus pattern (25 bp):
TTAAAAAAATAACATATATAACTAA
Found at i:79858518 original size:24 final size:24
Alignment explanation
Indices: 79858503--79858554 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
79858493 AATCAAAGTC
79858503 AAATATATTACGCTAATAAATGCT
1 AAATATATTACGCTAATAAATGCT
** * *
79858527 AAATATATTATACTCATAAATACT
1 AAATATATTACGCTAATAAATGCT
79858551 AAAT
1 AAAT
79858555 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.12, G:0.04, T:0.35
Consensus pattern (24 bp):
AAATATATTACGCTAATAAATGCT
Found at i:79861262 original size:22 final size:22
Alignment explanation
Indices: 79861231--79861275 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
79861221 TTTGTACTTA
*
79861231 TGGATTGAAGAAATAAGTGAAG
1 TGGATCGAAGAAATAAGTGAAG
*
79861253 TGGATCGAAGAAATGAGTGAAG
1 TGGATCGAAGAAATAAGTGAAG
79861275 T
1 T
79861276 AGTAACTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.42, C:0.02, G:0.33, T:0.22
Consensus pattern (22 bp):
TGGATCGAAGAAATAAGTGAAG
Found at i:79863674 original size:25 final size:26
Alignment explanation
Indices: 79863653--79863702 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
79863643 CAAAAAAACT
* *
79863653 AAAATCTAATCTAAAAA-GAAAAGAG
1 AAAACCTAAACTAAAAATGAAAAGAG
79863678 AAAACCTAAACTAAAAATGAAAAGA
1 AAAACCTAAACTAAAAATGAAAAGA
79863703 ATAGAAACCC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.66, C:0.10, G:0.10, T:0.14
Consensus pattern (26 bp):
AAAACCTAAACTAAAAATGAAAAGAG
Found at i:79866807 original size:21 final size:21
Alignment explanation
Indices: 79866783--79866835 Score: 58
Period size: 19 Copynumber: 2.7 Consensus size: 21
79866773 AAATATAATG
*
79866783 TATTATATATTTTTTAAAATT
1 TATTATATATTTTTTAAAATA
*
79866804 TATTA-A-ATTTATTAAAATA
1 TATTATATATTTTTTAAAATA
*
79866823 T-TTATGTATTTTT
1 TATTATATATTTTT
79866836 AGTTTTTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
18 3 0.12
19 12 0.46
20 6 0.23
21 5 0.19
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (21 bp):
TATTATATATTTTTTAAAATA
Found at i:79867336 original size:6 final size:6
Alignment explanation
Indices: 79867325--79867352 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
79867315 CACTGATCTT
79867325 CCCTTC CCCTTC CCCTTC CCCTTC CCCT
1 CCCTTC CCCTTC CCCTTC CCCTTC CCCT
79867353 ATCCTTGACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.68, G:0.00, T:0.32
Consensus pattern (6 bp):
CCCTTC
Found at i:79869945 original size:22 final size:24
Alignment explanation
Indices: 79869895--79869945 Score: 56
Period size: 24 Copynumber: 2.2 Consensus size: 24
79869885 TTGCAATGCT
79869895 TTTATATTTTAATAATTGAGTATTA
1 TTTATATTTTAAT-ATTGAGTATTA
79869920 -TTATATATTTAAT-TTGA-T-TTA
1 TTTATAT-TTTAATATTGAGTATTA
79869941 TTTAT
1 TTTAT
79869946 TTATAAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
21 3 0.12
22 5 0.21
23 4 0.17
24 6 0.25
25 6 0.25
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (24 bp):
TTTATATTTTAATATTGAGTATTA
Found at i:79870154 original size:34 final size:35
Alignment explanation
Indices: 79870101--79870167 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
79870091 CAAACACCAG
* *
79870101 AAAATATTTTTCAGCAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGCAAATCATTTTACAGAAAAGT
*
79870136 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGCAAATCATTTTACAGAAAA
79870168 CATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGCAAATCATTTTACAGAAAAGT
Found at i:79870159 original size:14 final size:14
Alignment explanation
Indices: 79870136--79870175 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
79870126 ACAGAAAAGT
*
79870136 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
79870150 AAATCATTTTACGG
1 AAAACATTTTACAG
79870164 AAAACATTTTAC
1 AAAACATTTTAC
79870176 TGACAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:79878911 original size:41 final size:41
Alignment explanation
Indices: 79878861--79879003 Score: 205
Period size: 41 Copynumber: 3.5 Consensus size: 41
79878851 TGATTCAGAA
* *
79878861 CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAAATATTT
1 CACCAGCATTAAGCCTGCTAGACGTAAAGTCTGAATTATTT
*
79878902 CACCAGCATTAAGCCTGCTAGATGTAAAGTCTGAATTATTT
1 CACCAGCATTAAGCCTGCTAGACGTAAAGTCTGAATTATTT
** * *
79878943 CACTGGCACTAAGCTTGCTAGACGTAAAGTCTGAATTATTT
1 CACCAGCATTAAGCCTGCTAGACGTAAAGTCTGAATTATTT
* *
79878984 CACTAGCATTAAGTCTGCTA
1 CACCAGCATTAAGCCTGCTA
79879004 AGCACAGAGC
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 90 1.00
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30
Consensus pattern (41 bp):
CACCAGCATTAAGCCTGCTAGACGTAAAGTCTGAATTATTT
Found at i:79879633 original size:2 final size:2
Alignment explanation
Indices: 79879626--79879650 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
79879616 CTAGTGTATG
79879626 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
79879651 AATTCCAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:79882095 original size:75 final size:75
Alignment explanation
Indices: 79881956--79882160 Score: 275
Period size: 75 Copynumber: 2.7 Consensus size: 75
79881946 AAAGAAAAGG
* * * * * * *
79881956 ATTCATGGCATTGCCTTCGATAGAATATCCATTGAATTGGCAGATCGAGGTACATGAAATATGAC
1 ATTCATGACGTTGCCTTCGATGGAATATCCATTGAACTGGCAGATCGTGGTACATAAAACATGAC
*
79882021 TCTATACTGA
66 TCTATAATGA
* ** *
79882031 ATTTATGGTGTTGCCTTCGATGGAATATCCATTGAACTGGTAGATCGTGGTACATAAAACATGAC
1 ATTCATGACGTTGCCTTCGATGGAATATCCATTGAACTGGCAGATCGTGGTACATAAAACATGAC
79882096 TCTATAATGA
66 TCTATAATGA
* * *
79882106 ATTCATGACGTTGCCTTCGATGCAAAATGCATTGAACTGGCAGATCGTGGTACAT
1 ATTCATGACGTTGCCTTCGATGGAATATCCATTGAACTGGCAGATCGTGGTACAT
79882161 GAATAATGGT
Statistics
Matches: 113, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
75 113 1.00
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.31
Consensus pattern (75 bp):
ATTCATGACGTTGCCTTCGATGGAATATCCATTGAACTGGCAGATCGTGGTACATAAAACATGAC
TCTATAATGA
Found at i:79903248 original size:76 final size:73
Alignment explanation
Indices: 79903110--79903274 Score: 177
Period size: 76 Copynumber: 2.2 Consensus size: 73
79903100 CTCATGCTTA
* * * *
79903110 GGAGCATTAATTTTTTGGATGAATAATTTAAGCTCATGCTTAGGAGCGATACAATATTTTAAGCT
1 GGAGCATTAATTTTTTGGATGAATAATTTAAGATCATGCTTAGGAACAATACAATAATTTAAGCT
79903175 CGTGTTTG
66 CGTGTTTG
* * * ***
79903183 GGAGCATTATTTTGTTTTGGATGAATAATTTTATGATCATGTTTAGGAACAATGTGATAATTTAA
1 GGAGCATTA-ATT-TTTTGGATGAATAA-TTTAAGATCATGCTTAGGAACAATACAATAATTTAA
* * *
79903248 GCTTGTGCTTA
63 GCTCGTGTTTG
*
79903259 AGAGCATTAATTTTTT
1 GGAGCATTAATTTTTT
79903275 TATTTGCTTC
Statistics
Matches: 74, Mismatches: 15, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
73 9 0.12
74 6 0.08
75 16 0.22
76 43 0.58
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (73 bp):
GGAGCATTAATTTTTTGGATGAATAATTTAAGATCATGCTTAGGAACAATACAATAATTTAAGCT
CGTGTTTG
Found at i:79912216 original size:120 final size:120
Alignment explanation
Indices: 79911998--79912235 Score: 413
Period size: 120 Copynumber: 2.0 Consensus size: 120
79911988 CCCCTGCAGC
* *
79911998 TTTGGAATTTTTCAATGCTTTCTTAAAAATTCTCTGAGTTCCTGATTTAGTCTCGACTTGTTTCT
1 TTTGAAATTTTTCAATGCTTTCTGAAAAATTCTCTGAGTTCCTGATTTAGTCTCGACTTGTTTCT
*
79912063 AACATGTATTTAGGGCCTCGAGGTCTCGTATAAGGGACAATATGTATGATTTTGA
66 AACATGTATTTAGGGCCTCGAGGGCTCGTATAAGGGACAATATGTATGATTTTGA
*
79912118 TTTGAAATTTTTCAATGCTTTCTGAAAAATTCTCTGAGTTCTTGATTTAGTCTCGACTTGTTTCT
1 TTTGAAATTTTTCAATGCTTTCTGAAAAATTCTCTGAGTTCCTGATTTAGTCTCGACTTGTTTCT
* * *
79912183 AACCTGTATTTAGGGCCTTGAGGGCTTGTATAAGGGACAATATGTATGATTTT
66 AACATGTATTTAGGGCCTCGAGGGCTCGTATAAGGGACAATATGTATGATTTT
79912236 AATTGGTTTT
Statistics
Matches: 111, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
120 111 1.00
ACGTcount: A:0.24, C:0.14, G:0.19, T:0.42
Consensus pattern (120 bp):
TTTGAAATTTTTCAATGCTTTCTGAAAAATTCTCTGAGTTCCTGATTTAGTCTCGACTTGTTTCT
AACATGTATTTAGGGCCTCGAGGGCTCGTATAAGGGACAATATGTATGATTTTGA
Found at i:79918804 original size:8 final size:9
Alignment explanation
Indices: 79918781--79918807 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
79918771 TTTTTTAACT
79918781 TTAAAAATA
1 TTAAAAATA
79918790 TTAAAAATA
1 TTAAAAATA
79918799 TTAAAAATA
1 TTAAAAATA
79918808 GCTAGCAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (9 bp):
TTAAAAATA
Found at i:79919684 original size:10 final size:10
Alignment explanation
Indices: 79919669--79919695 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
79919659 TTAAGTTTAG
79919669 TGTGTTTAAA
1 TGTGTTTAAA
79919679 TGTGTTTAAA
1 TGTGTTTAAA
79919689 TGTGTTT
1 TGTGTTT
79919696 GTTAATAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.22, C:0.00, G:0.22, T:0.56
Consensus pattern (10 bp):
TGTGTTTAAA
Found at i:79921431 original size:12 final size:12
Alignment explanation
Indices: 79921416--79921440 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
79921406 GATCCCTATG
79921416 AAGAAAGTGATC
1 AAGAAAGTGATC
79921428 AAGAAAGTGATC
1 AAGAAAGTGATC
79921440 A
1 A
79921441 TTCATCTGCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.08, G:0.24, T:0.16
Consensus pattern (12 bp):
AAGAAAGTGATC
Found at i:79927519 original size:24 final size:25
Alignment explanation
Indices: 79927491--79927546 Score: 80
Period size: 24 Copynumber: 2.3 Consensus size: 25
79927481 TTAATATTGT
79927491 TTTCTCTCATCCCATAATCTT-TCTA
1 TTTCTCTCA-CCCATAATCTTCTCTA
*
79927516 -TTCTCTCACCCTTAATCTTCTCTA
1 TTTCTCTCACCCATAATCTTCTCTA
79927540 TTTCTCT
1 TTTCTCT
79927547 TATTTTATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
23 10 0.36
24 12 0.43
25 6 0.21
ACGTcount: A:0.16, C:0.34, G:0.00, T:0.50
Consensus pattern (25 bp):
TTTCTCTCACCCATAATCTTCTCTA
Found at i:79928815 original size:13 final size:13
Alignment explanation
Indices: 79928792--79928823 Score: 55
Period size: 13 Copynumber: 2.4 Consensus size: 13
79928782 AGGCAAGGCT
79928792 ACTGTTCGTTGATC
1 ACTG-TCGTTGATC
79928806 ACTGTCGTTGATC
1 ACTGTCGTTGATC
79928819 ACTGT
1 ACTGT
79928824 AGTCGTGCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 14 0.78
14 4 0.22
ACGTcount: A:0.16, C:0.22, G:0.22, T:0.41
Consensus pattern (13 bp):
ACTGTCGTTGATC
Found at i:79932330 original size:35 final size:35
Alignment explanation
Indices: 79932284--79932355 Score: 126
Period size: 35 Copynumber: 2.1 Consensus size: 35
79932274 GTTATGGTCG
*
79932284 AATCCAGAAGTGTTATAAAGAAGGGTTTCGAAACT
1 AATCCAGAAGTGTTACAAAGAAGGGTTTCGAAACT
*
79932319 AATCCGGAAGTGTTACAAAGAAGGGTTTCGAAACT
1 AATCCAGAAGTGTTACAAAGAAGGGTTTCGAAACT
79932354 AA
1 AA
79932356 CTTTACTTCG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.40, C:0.12, G:0.24, T:0.24
Consensus pattern (35 bp):
AATCCAGAAGTGTTACAAAGAAGGGTTTCGAAACT
Found at i:79938401 original size:14 final size:14
Alignment explanation
Indices: 79938379--79938411 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
79938369 AAAATATTTA
*
79938379 ATTTATCAAAAATT
1 ATTTTTCAAAAATT
79938393 ATTTTTCAAAAATT
1 ATTTTTCAAAAATT
79938407 ATTTT
1 ATTTT
79938412 CATCCAATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (14 bp):
ATTTTTCAAAAATT
Done.