Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 262 of 313
Found at i:80160305 original size:29 final size:31
Alignment explanation
Indices: 80160248--80160329 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 31
80160238 GAATTGAATC
*
80160248 AAATTAAAAATTCATATATATAAATTTACATA-
1 AAATT-AAAATT-ATATATATAAAATTACATAT
*
80160280 AAATTAAAATT-TATGTATAAAATTACATATT
1 AAATTAAAATTATATATATAAAATTACATA-T
*
80160311 AAATTAAAGTTCATATATA
1 AAATTAAAATT-ATATATA
80160330 ATTTTAAAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
29 16 0.38
31 16 0.38
32 5 0.12
33 5 0.12
ACGTcount: A:0.54, C:0.05, G:0.02, T:0.39
Consensus pattern (31 bp):
AAATTAAAATTATATATATAAAATTACATAT
Found at i:80160330 original size:31 final size:30
Alignment explanation
Indices: 80160248--80160330 Score: 96
Period size: 31 Copynumber: 2.7 Consensus size: 30
80160238 GAATTGAATC
80160248 AAATTAAAAATTCATATATATAAATTTACATA
1 AAATT-AAAATTCATATATA-AAATTTACATA
* *
80160280 AAATTAAAATTTATGTATAAAA-TTACATA
1 AAATTAAAATTCATATATAAAATTTACATA
*
80160309 TTAAATTAAAGTTCATATATAA
1 --AAATTAAAATTCATATATAA
80160331 TTTTAAAATT
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
29 7 0.16
30 3 0.07
31 29 0.66
32 5 0.11
ACGTcount: A:0.54, C:0.05, G:0.02, T:0.39
Consensus pattern (30 bp):
AAATTAAAATTCATATATAAAATTTACATA
Found at i:80167123 original size:14 final size:14
Alignment explanation
Indices: 80167096--80167150 Score: 60
Period size: 14 Copynumber: 3.9 Consensus size: 14
80167086 GAGGAGAAGG
*
80167096 GGAAGGAAAAGAAA
1 GGAAGGAGAAGAAA
80167110 TGGAA-GAGAAGAAAA
1 -GGAAGGAGAAG-AAA
80167125 GGAAAGGAGAA-AAA
1 GG-AAGGAGAAGAAA
80167139 GGAAGGAGAAGA
1 GGAAGGAGAAGA
80167151 GGTTGTGTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
13 8 0.23
14 13 0.37
15 9 0.26
16 5 0.14
ACGTcount: A:0.60, C:0.00, G:0.38, T:0.02
Consensus pattern (14 bp):
GGAAGGAGAAGAAA
Found at i:80167200 original size:31 final size:31
Alignment explanation
Indices: 80167147--80167218 Score: 87
Period size: 31 Copynumber: 2.3 Consensus size: 31
80167137 AAGGAAGGAG
80167147 AAGAGGTTGTGTTTGGGATTTGAGAAAAGAATT
1 AAGAGGTTGTGTTTGGGATTTGA-AAAA-AATT
*
80167180 -AG-GGTTGTGTTTAGTG-TTTGAAAAAAATT
1 AAGAGGTTGTGTTT-GGGATTTGAAAAAAATT
80167209 AAGAGGTTGT
1 AAGAGGTTGT
80167219 ATTCGGGGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
29 4 0.11
30 6 0.17
31 21 0.60
32 4 0.11
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.36
Consensus pattern (31 bp):
AAGAGGTTGTGTTTGGGATTTGAAAAAAATT
Found at i:80167507 original size:28 final size:28
Alignment explanation
Indices: 80167468--80167524 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 28
80167458 ATGTAGAATC
**
80167468 TTTTATGTTTTATTTTTATGTA-ATTTAT
1 TTTTATGTTTTAGGTTTAT-TAGATTTAT
80167496 TTTTATGTTTTAGGTTTATTAGATTTAT
1 TTTTATGTTTTAGGTTTATTAGATTTAT
80167524 T
1 T
80167525 ATGTTTATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 2 0.08
28 24 0.92
ACGTcount: A:0.21, C:0.00, G:0.11, T:0.68
Consensus pattern (28 bp):
TTTTATGTTTTAGGTTTATTAGATTTAT
Found at i:80167514 original size:13 final size:13
Alignment explanation
Indices: 80167468--80167507 Score: 62
Period size: 15 Copynumber: 2.9 Consensus size: 13
80167458 ATGTAGAATC
80167468 TTTTATGTTTTAT
1 TTTTATGTTTTAT
80167481 TTTTATGTAATTTAT
1 TTTTATGT--TTTAT
80167496 TTTTATGTTTTA
1 TTTTATGTTTTA
80167508 GGTTTATTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 12 0.48
15 13 0.52
ACGTcount: A:0.20, C:0.00, G:0.07, T:0.72
Consensus pattern (13 bp):
TTTTATGTTTTAT
Found at i:80167799 original size:12 final size:12
Alignment explanation
Indices: 80167782--80167806 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
80167772 TTTTGTAATG
80167782 AAAATTTATTGT
1 AAAATTTATTGT
80167794 AAAATTTATTGT
1 AAAATTTATTGT
80167806 A
1 A
80167807 TCACATTTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (12 bp):
AAAATTTATTGT
Found at i:80169940 original size:48 final size:48
Alignment explanation
Indices: 80169886--80170083 Score: 272
Period size: 48 Copynumber: 4.1 Consensus size: 48
80169876 GTATTTGTTT
* ** * *
80169886 AATTAGATTA-ATTGTAACATTAAAACTTGGAATAAACTTTGTAACATA
1 AATTAGA-TACATTGCAACATTAAAACAAGGAACAAACTTTGTAATATA
*
80169934 AATTAGATACATTGCAACATTAAAACGAGGAACAAACTTTGTAATATA
1 AATTAGATACATTGCAACATTAAAACAAGGAACAAACTTTGTAATATA
* * *
80169982 AATTAGATACATTACAACATTAAAACGATGAACAAACTTTGTAATATA
1 AATTAGATACATTGCAACATTAAAACAAGGAACAAACTTTGTAATATA
* * *
80170030 AATTAGATATATTGCAACATTAAAACAAGAAACATACTTTGTAATATA
1 AATTAGATACATTGCAACATTAAAACAAGGAACAAACTTTGTAATATA
80170078 AATTAG
1 AATTAG
80170084 GTACCTTGGA
Statistics
Matches: 136, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
47 2 0.01
48 134 0.99
ACGTcount: A:0.48, C:0.11, G:0.10, T:0.31
Consensus pattern (48 bp):
AATTAGATACATTGCAACATTAAAACAAGGAACAAACTTTGTAATATA
Found at i:80174981 original size:33 final size:33
Alignment explanation
Indices: 80174938--80175002 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
80174928 CATGCAATAG
*
80174938 CAGTCTGGGCCTGAGCCC-TATACAGTAACAGTA
1 CAGTCTGGGCCTGAGCCCAT-TACAATAACAGTA
* *
80174971 CAGTGTGGGCCTTAGCCCATTACAATAACAGT
1 CAGTCTGGGCCTGAGCCCATTACAATAACAGT
80175003 GTGGGTCTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 27 0.96
34 1 0.04
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (33 bp):
CAGTCTGGGCCTGAGCCCATTACAATAACAGTA
Found at i:80175012 original size:28 final size:28
Alignment explanation
Indices: 80174970--80175030 Score: 86
Period size: 28 Copynumber: 2.2 Consensus size: 28
80174960 CAGTAACAGT
* *
80174970 ACAGTGTGGGCCTTAGCCCATTACAATA
1 ACAGTGTGGGCCTTAACCCAATACAATA
* *
80174998 ACAGTGTGGGTCTTAACCCAATACAGTA
1 ACAGTGTGGGCCTTAACCCAATACAATA
80175026 ACAGT
1 ACAGT
80175031 ACAATGCAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (28 bp):
ACAGTGTGGGCCTTAACCCAATACAATA
Found at i:80175174 original size:26 final size:26
Alignment explanation
Indices: 80175136--80175212 Score: 109
Period size: 26 Copynumber: 3.0 Consensus size: 26
80175126 ACACCAATAT
* * *
80175136 CACAGCAAAGCTGCCAGTAATAGTGA
1 CACAACAAAGCTGCCAGTAACAGTAA
**
80175162 TGCAACAAAGCTGCCAGTAACAGTAA
1 CACAACAAAGCTGCCAGTAACAGTAA
80175188 CACAACAAAGCTGCCAGTAACAGTA
1 CACAACAAAGCTGCCAGTAACAGTA
80175213 TATGTAGCAA
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.42, C:0.25, G:0.19, T:0.14
Consensus pattern (26 bp):
CACAACAAAGCTGCCAGTAACAGTAA
Found at i:80175444 original size:27 final size:26
Alignment explanation
Indices: 80175388--80175664 Score: 261
Period size: 27 Copynumber: 10.3 Consensus size: 26
80175378 GGTATAACAA
* **
80175388 TCATTTTACCCTTCG-GGGTATTTCAA
1 TCATTTTA-CCTTTGAGGGTATTTCGG
*
80175414 TCATTTTACCATTTGAGGATATTTCGG
1 TCATTTTACC-TTTGAGGGTATTTCGG
* *
80175441 TCATTTTATCCTTCGAGGGTAATTT-GA
1 TCATTTTA-CCTTTGAGGGT-ATTTCGG
** * *
80175468 TCATTTTACCATTCAAGGGTAATTCAG
1 TCATTTTACC-TTTGAGGGTATTTCGG
*
80175495 TCATTTTACCTTTCAAGGGTATTTCGG
1 TCATTTTACCTTT-GAGGGTATTTCGG
*
80175522 TCATTTTACCTTTCGAAGGTATTTCGG
1 TCATTTTACCTTT-GAGGGTATTTCGG
* *
80175549 TCTTTTTACCTTTTGAGGGTATTTCAG
1 TCATTTTACC-TTTGAGGGTATTTCGG
*
80175576 TCATTTTACCCTTTGGGGGTATTTCGG
1 TCATTTTA-CCTTTGAGGGTATTTCGG
*
80175603 TCATTTTACCTTTCGGGGGTATTTCGG
1 TCATTTTACCTTT-GAGGGTATTTCGG
* * * *
80175630 TCATTTTACCCTTCGGGGGTAATTCGA
1 TCATTTTA-CCTTTGAGGGTATTTCGG
80175657 TCATTTTA
1 TCATTTTA
80175665 GGCCCAATAC
Statistics
Matches: 215, Mismatches: 25, Indels: 21
0.82 0.10 0.08
Matches are distributed among these distances:
25 2 0.01
26 23 0.11
27 175 0.81
28 15 0.07
ACGTcount: A:0.19, C:0.18, G:0.19, T:0.44
Consensus pattern (26 bp):
TCATTTTACCTTTGAGGGTATTTCGG
Found at i:80175475 original size:54 final size:54
Alignment explanation
Indices: 80175388--80175664 Score: 294
Period size: 54 Copynumber: 5.1 Consensus size: 54
80175378 GGTATAACAA
* * *
80175388 TCATTTTACCCTTCG-GGGTATTTCAATCATTTTACCATTTGAGGATATTTCGG
1 TCATTTTACCTTTCGAGGGTATTTCGATCATTTTACCATTTGAGGGTATTTCGG
** * *
80175441 TCATTTTATCC-TTCGAGGGTAATTT-GATCATTTTACCATTCAAGGGTAATTCAG
1 TCATTTTA-CCTTTCGAGGGT-ATTTCGATCATTTTACCATTTGAGGGTATTTCGG
* * *
80175495 TCATTTTACCTTTCAAGGGTATTTCGGTCATTTTACC-TTTCGAAGGTATTTCGG
1 TCATTTTACCTTTCGAGGGTATTTCGATCATTTTACCATTT-GAGGGTATTTCGG
* * * *
80175549 TCTTTTTACCTTTTGAGGGTATTTC-AGTCATTTTACCCTTTGGGGGTATTTCGG
1 TCATTTTACCTTTCGAGGGTATTTCGA-TCATTTTACCATTTGAGGGTATTTCGG
* * * * * * *
80175603 TCATTTTACCTTTCGGGGGTATTTCGGTCATTTTACCCTTCGGGGGTAATTCGA
1 TCATTTTACCTTTCGAGGGTATTTCGATCATTTTACCATTTGAGGGTATTTCGG
80175657 TCATTTTA
1 TCATTTTA
80175665 GGCCCAATAC
Statistics
Matches: 189, Mismatches: 26, Indels: 17
0.81 0.11 0.07
Matches are distributed among these distances:
53 20 0.11
54 162 0.86
55 7 0.04
ACGTcount: A:0.19, C:0.18, G:0.19, T:0.44
Consensus pattern (54 bp):
TCATTTTACCTTTCGAGGGTATTTCGATCATTTTACCATTTGAGGGTATTTCGG
Found at i:80175518 original size:81 final size:80
Alignment explanation
Indices: 80175387--80175664 Score: 330
Period size: 81 Copynumber: 3.5 Consensus size: 80
80175377 GGGTATAACA
* * *
80175387 ATCATTTTACCCTTCG-GGGTATTTCAATCATTTTACCATTTGAGGATATTTCGGTCATTTTATC
1 ATCATTTTACCCTTCGAGGGTAATTCAGTCATTTTACC-TTTGAGGGTATTTCGGTCATTTTA-C
80175451 C-TTCGAGGGTAATTT-G
64 CTTTCGAGGGT-ATTTCG
* * *
80175467 ATCATTTTACCATTCAAGGGTAATTCAGTCATTTTACCTTTCAAGGGTATTTCGGTCATTTTACC
1 ATCATTTTACCCTTCGAGGGTAATTCAGTCATTTTACCTTT-GAGGGTATTTCGGTCATTTTACC
*
80175532 TTTCGAAGGTATTTCG
65 TTTCGAGGGTATTTCG
* * * * * *
80175548 GTCTTTTTACCTTTTGAGGGTATTTCAGTCATTTTACCCTTTGGGGGTATTTCGGTCATTTTACC
1 ATCATTTTACCCTTCGAGGGTAATTCAGTCATTTTA-CCTTTGAGGGTATTTCGGTCATTTTACC
*
80175613 TTTCGGGGGTATTTCG
65 TTTCGAGGGTATTTCG
* *
80175629 GTCATTTTACCCTTCGGGGGTAATTC-GATCATTTTA
1 ATCATTTTACCCTTCGAGGGTAATTCAG-TCATTTTA
80175665 GGCCCAATAC
Statistics
Matches: 170, Mismatches: 22, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
80 24 0.14
81 141 0.83
82 5 0.03
ACGTcount: A:0.19, C:0.18, G:0.19, T:0.44
Consensus pattern (80 bp):
ATCATTTTACCCTTCGAGGGTAATTCAGTCATTTTACCTTTGAGGGTATTTCGGTCATTTTACCT
TTCGAGGGTATTTCG
Found at i:80179530 original size:18 final size:18
Alignment explanation
Indices: 80179504--80179562 Score: 63
Period size: 18 Copynumber: 3.4 Consensus size: 18
80179494 TCGAACGCTC
*
80179504 TCTTATTCTTCACTCATT
1 TCTTTTTCTTCACTCATT
*
80179522 TCTTTTTCTATCTCTC-TT
1 TCTTTTTCT-TCACTCATT
80179540 TCTTTTTC--CAC-CATT
1 TCTTTTTCTTCACTCATT
80179555 TCTTTTTC
1 TCTTTTTC
80179563 AACAATCATT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
14 1 0.03
15 12 0.33
18 18 0.50
19 5 0.14
ACGTcount: A:0.10, C:0.29, G:0.00, T:0.61
Consensus pattern (18 bp):
TCTTTTTCTTCACTCATT
Found at i:80180125 original size:21 final size:21
Alignment explanation
Indices: 80180087--80180126 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
80180077 ATCGTTGATG
* *
80180087 ATGACGATGGACTTCTTGAAA
1 ATGACGATGGAATACTTGAAA
*
80180108 ATGATGATGGAATACTTGA
1 ATGACGATGGAATACTTGA
80180127 CGACTTTGTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.10, G:0.25, T:0.30
Consensus pattern (21 bp):
ATGACGATGGAATACTTGAAA
Found at i:80191738 original size:59 final size:59
Alignment explanation
Indices: 80191640--80191752 Score: 129
Period size: 59 Copynumber: 1.9 Consensus size: 59
80191630 AACAAACTCA
* * *
80191640 AAAATAATTTTGTTCAACGGCAGGATTAAATCCCAAAACAAAATT-ATGTAATTAAATC
1 AAAATAAATTTGTTAAACGGCAGGAATAAATCCCAAAACAAAATTAATGTAATTAAATC
** ** * *
80191698 AAAATAAAATTTGTTAAACGGTGGGAATAAATCCTGAAACAGATTTAATGTAATT
1 AAAAT-AAATTTGTTAAACGGCAGGAATAAATCCCAAAACAAAATTAATGTAATT
80191753 TAATTCTAAT
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
58 5 0.11
59 31 0.70
60 8 0.18
ACGTcount: A:0.46, C:0.11, G:0.13, T:0.30
Consensus pattern (59 bp):
AAAATAAATTTGTTAAACGGCAGGAATAAATCCCAAAACAAAATTAATGTAATTAAATC
Found at i:80191796 original size:84 final size:83
Alignment explanation
Indices: 80191693--80191911 Score: 291
Period size: 84 Copynumber: 2.6 Consensus size: 83
80191683 TTATGTAATT
*
80191693 AAATCAAAATAAAATTTGTTAAACGGTGGGAATAAATCCTGAAACAGATTTAATGTAATTTAATT
1 AAATC-AAATAAAATTTGTTAAACGGCGGGAATAAATCCTGAAACAGATTTAATGTAATTTAATT
*
80191758 CTAATTTGGAAACAAAA-C
65 CTAAATTGGAAACAAAATC
* * * *
80191776 AAAATCAAATAAAATATTGTTAAATGGCGGGAATAGAT-CTCGGAACAGATTTAATTTAATTTAA
1 -AAATCAAATAAAAT-TTGTTAAACGGCGGGAATAAATCCT-GAAACAGATTTAATGTAATTTAA
80191840 TTCTAAATTGGAAACAAAATC
63 TTCTAAATTGGAAACAAAATC
* *
80191861 AAATCAAATAAGATCTTGTTAAACGGCGGGAATAAATTCC-GAAACAAATTT
1 AAATCAAATAAAAT-TTGTTAAACGGCGGGAATAAA-TCCTGAAACAGATTT
80191912 TATATTAATT
Statistics
Matches: 118, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
83 11 0.09
84 104 0.88
85 2 0.02
86 1 0.01
ACGTcount: A:0.46, C:0.11, G:0.14, T:0.29
Consensus pattern (83 bp):
AAATCAAATAAAATTTGTTAAACGGCGGGAATAAATCCTGAAACAGATTTAATGTAATTTAATTC
TAAATTGGAAACAAAATC
Found at i:80191996 original size:54 final size:55
Alignment explanation
Indices: 80191902--80192009 Score: 173
Period size: 54 Copynumber: 2.0 Consensus size: 55
80191892 ATAAATTCCG
*
80191902 AAACAAATTTTATATTAATTTTAATACTTGTTTTTAGAAATAAAATCAAAATTGA
1 AAACAAATTTTATATTAATTTTAATACTCGTTTTTAGAAATAAAATCAAAATTGA
* * *
80191957 AAACAGATTTTATTTTAA-TTTAATACTCGTTTTTGGAAATAAAATCAAAATTG
1 AAACAAATTTTATATTAATTTTAATACTCGTTTTTAGAAATAAAATCAAAATTG
80192010 GAATAAAATC
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
54 33 0.67
55 16 0.33
ACGTcount: A:0.44, C:0.06, G:0.07, T:0.42
Consensus pattern (55 bp):
AAACAAATTTTATATTAATTTTAATACTCGTTTTTAGAAATAAAATCAAAATTGA
Found at i:80192097 original size:90 final size:88
Alignment explanation
Indices: 80191956--80192488 Score: 488
Period size: 88 Copynumber: 6.2 Consensus size: 88
80191946 ATCAAAATTG
80191956 AAAACAGATTTTATTTTAA-TTTAATACTCGTTTTTGGAAATAAAATCAAAATTGGAATAAAATC
1 AAAACAGATTTTATTTTAATTTTAATACTC-TTTTTGGAAATAAAATCAAAATTGGAATAAAATC
* * *
80192020 TGTTGAACAGCGAGAATAATTCCC
65 CGTTGAACGGCGAGAATAAATCCC
*
80192044 AAAACAGATTTTATTTTAATTTTAATACTCATTTTTTGGAAATAAAATCAAAATTGGAATACAAT
1 AAAACAGATTTTATTTTAATTTTAATACTC--TTTTTGGAAATAAAATCAAAATTGGAATAAAAT
* *
80192109 CCGTTGAACGGTGGGAATAAATCCC
64 CCGTTGAACGGCGAGAATAAATCCC
* * **
80192134 AAAACAGATTTTATTTTAATTTTAATGCTCGTTTTGGAAATAAAATCAAAATTGGAATAAAATTT
1 AAAACAGATTTTATTTTAATTTTAATACTCTTTTTGGAAATAAAATCAAAATTGGAATAAAATCC
* *
80192199 GTTGAACGACGGGAATAAATCCC
66 GTTGAACGGCGAGAATAAATCCC
* * * * * *
80192222 GAAACAGAATTTA-TTTAACTTTAAT-TTCCCTTTTGGAAATAAAATAAAAATT-GAATAAAATC
1 AAAACAGATTTTATTTTAATTTTAATACT-CTTTTTGGAAATAAAATCAAAATTGGAATAAAATC
80192284 CGTTGAACGGC-AGGAATAAATCCC
65 CGTTGAACGGCGA-GAATAAATCCC
* * * * *
80192308 GAAACAGATTTTA-TTTACTTTT-A-A-----TTT-GAAACAAAATC----G---AATAAAATCT
1 AAAACAGATTTTATTTTAATTTTAATACTCTTTTTGGAAATAAAATCAAAATTGGAATAAAATCC
* * *
80192357 GTTAAACGGTGAGAACAAA-CCC
66 GTTGAACGGCGAGAATAAATCCC
* * * *
80192379 TGAAATAGATTTTA-TTTAATTTTAATA-T-TTGTTTGGAAATAAAAACAAAATAGAGAATAAAA
1 -AAAACAGATTTTATTTTAATTTTAATACTCTT-TTTGGAAATAAAATCAAAATTG-GAATAAAA
* * * *
80192441 TCTGTTGAACTGCGGGGAAAAAATCCC
63 TCCGTTGAACGGC-GAGAATAAATCCC
*
80192468 GAAACAGATTTTA-TTTAATTT
1 AAAACAGATTTTATTTTAATTT
80192489 AAAAATTTAT
Statistics
Matches: 376, Mismatches: 45, Indels: 48
0.80 0.10 0.10
Matches are distributed among these distances:
71 3 0.01
72 43 0.11
73 2 0.01
74 1 0.00
78 12 0.03
79 12 0.03
85 1 0.00
86 49 0.13
87 50 0.13
88 109 0.29
89 13 0.03
90 81 0.22
ACGTcount: A:0.42, C:0.11, G:0.14, T:0.33
Consensus pattern (88 bp):
AAAACAGATTTTATTTTAATTTTAATACTCTTTTTGGAAATAAAATCAAAATTGGAATAAAATCC
GTTGAACGGCGAGAATAAATCCC
Found at i:80192344 original size:72 final size:72
Alignment explanation
Indices: 80192268--80192404 Score: 179
Period size: 72 Copynumber: 1.9 Consensus size: 72
80192258 AAATAAAATA
* * * *
80192268 AAAATTGAATAAAATCCGTTGAACGGCAG-GAATAAATCCC-GAAACAGATTTTATTTACTTTTA
1 AAAATCGAATAAAATCCGTTAAACGG-AGAGAACAAA-CCCTGAAACAGATTTTATTTAATTTTA
80192331 ATTTGAAAC
64 ATTTGAAAC
* * *
80192340 AAAATCGAATAAAATCTGTTAAACGGTGAGAACAAACCCTGAAATAGATTTTATTTAATTTTAAT
1 AAAATCGAATAAAATCCGTTAAACGGAGAGAACAAACCCTGAAACAGATTTTATTTAATTTTAAT
80192405 ATTTGTTTGG
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
71 4 0.07
72 52 0.93
ACGTcount: A:0.43, C:0.12, G:0.13, T:0.31
Consensus pattern (72 bp):
AAAATCGAATAAAATCCGTTAAACGGAGAGAACAAACCCTGAAACAGATTTTATTTAATTTTAAT
TTGAAAC
Found at i:80194703 original size:23 final size:23
Alignment explanation
Indices: 80194677--80194735 Score: 82
Period size: 23 Copynumber: 2.6 Consensus size: 23
80194667 TAATTTTAGA
*
80194677 AATCAAGTGGAACACAACAGAAC
1 AATCAAGTGAAACACAACAGAAC
* **
80194700 AATCAAGTGAAACATAGTAGAAC
1 AATCAAGTGAAACACAACAGAAC
80194723 AATCAAGTGAAAC
1 AATCAAGTGAAAC
80194736 TAAAGAGATT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.53, C:0.17, G:0.17, T:0.14
Consensus pattern (23 bp):
AATCAAGTGAAACACAACAGAAC
Found at i:80196577 original size:20 final size:19
Alignment explanation
Indices: 80196545--80196582 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
80196535 CTTGCTTTGA
80196545 TTTTTCAATTTTTTGCTCG
1 TTTTTCAATTTTTTGCTCG
*
80196564 TTTTTCACTCTTTTTGCTC
1 TTTTTCAAT-TTTTTGCTC
80196583 CCAAGTGCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.08, C:0.21, G:0.08, T:0.63
Consensus pattern (19 bp):
TTTTTCAATTTTTTGCTCG
Found at i:80200812 original size:25 final size:25
Alignment explanation
Indices: 80200778--80200828 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
80200768 GTTAAATTTA
80200778 TTTTTATAATTT-TATAACTTTGAAC
1 TTTTTATAATTTAT-TAACTTTGAAC
*
80200803 TTTTTATAATTTATTTACTTTGAAC
1 TTTTTATAATTTATTAACTTTGAAC
80200828 T
1 T
80200829 AGTCAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 23 0.96
26 1 0.04
ACGTcount: A:0.29, C:0.08, G:0.04, T:0.59
Consensus pattern (25 bp):
TTTTTATAATTTATTAACTTTGAAC
Found at i:80202274 original size:19 final size:20
Alignment explanation
Indices: 80202238--80202275 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
80202228 AATGAATTTG
* *
80202238 TCTTCTTTCTTTGTTTTTAT
1 TCTTCTTTCCTTGCTTTTAT
80202258 TCTT-TTTCCTTGCTTTTA
1 TCTTCTTTCCTTGCTTTTA
80202276 GCTATGAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.05, C:0.18, G:0.05, T:0.71
Consensus pattern (20 bp):
TCTTCTTTCCTTGCTTTTAT
Found at i:80203240 original size:19 final size:19
Alignment explanation
Indices: 80203216--80203252 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
80203206 TTAGCATTTA
80203216 GCTAATCTATTTTTTTACT
1 GCTAATCTATTTTTTTACT
* *
80203235 GCTAATTTTTTTTTTTAC
1 GCTAATCTATTTTTTTAC
80203253 AATTTTAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.19, C:0.14, G:0.05, T:0.62
Consensus pattern (19 bp):
GCTAATCTATTTTTTTACT
Found at i:80215288 original size:68 final size:68
Alignment explanation
Indices: 80215199--80215673 Score: 743
Period size: 68 Copynumber: 7.0 Consensus size: 68
80215189 AAAATTAAGC
*
80215199 TGTCCGAATGTGTTAGATTCACTGATCAAAGCACCATCATTTATGCTATTTTATTTAGTAAATGT
1 TGTCTGAATGTGTTAGATTCACTGATCAAAGCACCATCATTTATGCTATTTTATTTAGTAAATGT
80215264 AGT
66 AGT
*
80215267 TTTCTGAATGTGTTAGATTCACTGATCAAAGCACCATCATTTATGCTATTTTATTTAGTAAATGT
1 TGTCTGAATGTGTTAGATTCACTGATCAAAGCACCATCATTTATGCTATTTTATTTAGTAAATGT
80215332 AGT
66 AGT
** *
80215335 TGTCCAAATGTGTTAGATTCACTGATCAAAGAACCATCATTTATGCTATTTTATTTAGTAAATGT
1 TGTCTGAATGTGTTAGATTCACTGATCAAAGCACCATCATTTATGCTATTTTATTTAGTAAATGT
80215400 AGT
66 AGT
*
80215403 TTTCTGAATGTGTTAGATTCACTGATCAAAGCACCATCATTTATGCTATTTTATTTAGTAAATGT
1 TGTCTGAATGTGTTAGATTCACTGATCAAAGCACCATCATTTATGCTATTTTATTTAGTAAATGT
80215468 AGT
66 AGT
* * *
80215471 TTTCTGAATGTGTTAGATTCACTGATCAAAGCACCATCATTTATGGTGTTTTATTTAGTAAATGT
1 TGTCTGAATGTGTTAGATTCACTGATCAAAGCACCATCATTTATGCTATTTTATTTAGTAAATGT
*
80215536 AGC
66 AGT
* * * * * *
80215539 TGTCTGAATGTGTTAAATTCATTGTTCAATGCACTATCATTTATGCTATTTTATTTAGTAAATAT
1 TGTCTGAATGTGTTAGATTCACTGATCAAAGCACCATCATTTATGCTATTTTATTTAGTAAATGT
80215604 AGT
66 AGT
* * * * * * *
80215607 TGTCTGAATGTGTTAAATTCACTGTTCAATGCACTACCATTTATGCTGTTTTATTTAATAAATGT
1 TGTCTGAATGTGTTAGATTCACTGATCAAAGCACCATCATTTATGCTATTTTATTTAGTAAATGT
80215672 AG
66 AG
80215674 CTGTTCGAAT
Statistics
Matches: 379, Mismatches: 28, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
68 379 1.00
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.42
Consensus pattern (68 bp):
TGTCTGAATGTGTTAGATTCACTGATCAAAGCACCATCATTTATGCTATTTTATTTAGTAAATGT
AGT
Found at i:80216197 original size:84 final size:85
Alignment explanation
Indices: 80216029--80216224 Score: 252
Period size: 84 Copynumber: 2.3 Consensus size: 85
80216019 TTCGAGTTGT
*
80216029 GATTTCGTGTAAGACCATGTCTGGGACATTGGCATCAATATGAGATTACGTGTAAGACCATGTCT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCAATAT-AGATTACGTGTAAGACCATGTCT
**
80216094 GGGACATTGGCATCAATATAA
65 GGGACAGAGGCATCAATATAA
** *
80216115 GATTACGTGTAAGACCATGTCTGGGACATTGGCA-CTGTATATGATT-CGTGTAAGACCCTGTCT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCAATATA-GATTACGTGTAAGACCATGTCT
* * *
80216178 GGGATAGAGGCATCGATATAT
65 GGGACAGAGGCATCAATATAA
* * *
80216199 GATAACATGTAAGACCATATCTGGGA
1 GATTACGTGTAAGACCATGTCTGGGA
80216225 TATGACATTG
Statistics
Matches: 97, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
84 56 0.58
85 8 0.08
86 33 0.34
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.29
Consensus pattern (85 bp):
GATTACGTGTAAGACCATGTCTGGGACATTGGCATCAATATAGATTACGTGTAAGACCATGTCTG
GGACAGAGGCATCAATATAA
Found at i:80216226 original size:43 final size:43
Alignment explanation
Indices: 80216028--80216224 Score: 256
Period size: 43 Copynumber: 4.6 Consensus size: 43
80216018 TTTCGAGTTG
*
80216028 TGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCAATATGA
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCAATAT-A
80216072 -GATTACGTGTAAGACCATGTCTGGGACATTGGCATCAATATA
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCAATATA
* **
80216114 AGATTACGTGTAAGACCATGTCTGGGACATTGGCA-CTGTATA
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCAATATA
* * ** *
80216156 TGATT-CGTGTAAGACCCTGTCTGGGATAGAGGCATCGATATA
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCAATATA
* * *
80216198 TGATAACATGTAAGACCATATCTGGGA
1 TGATTACGTGTAAGACCATGTCTGGGA
80216225 TATGACATTG
Statistics
Matches: 136, Mismatches: 14, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
41 25 0.18
42 19 0.14
43 92 0.68
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (43 bp):
TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCAATATA
Found at i:80220118 original size:21 final size:20
Alignment explanation
Indices: 80220080--80220118 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
80220070 TCCAATATCG
*
80220080 TGACATTCAAGTCAATGTCA
1 TGACATTCAAGCCAATGTCA
80220100 TGACATTCAAAGCCAATGT
1 TGACATTC-AAGCCAATGT
80220119 TGCGGAATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.28
Consensus pattern (20 bp):
TGACATTCAAGCCAATGTCA
Found at i:80222272 original size:19 final size:21
Alignment explanation
Indices: 80222243--80222285 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
80222233 TACAATATAA
80222243 AAATACAAATAATA-CAGCCC
1 AAATACAAATAATATCAGCCC
*
80222263 AAAT-CAAATAATATCAGTCC
1 AAATACAAATAATATCAGCCC
80222283 AAA
1 AAA
80222286 AATAAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.56, C:0.21, G:0.05, T:0.19
Consensus pattern (21 bp):
AAATACAAATAATATCAGCCC
Found at i:80222288 original size:22 final size:21
Alignment explanation
Indices: 80222241--80222298 Score: 57
Period size: 19 Copynumber: 2.8 Consensus size: 21
80222231 ACTACAATAT
80222241 AAAAATACAAATAATACAGCC
1 AAAAATACAAATAATACAGCC
*
80222262 -CAAAT-CAAATAATATCAGTCC
1 AAAAATACAAATAATA-CAG-CC
* *
80222283 AAAAATAAAAAAAATA
1 AAAAATACAAATAATA
80222299 AAAATAACAA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
19 9 0.31
20 7 0.24
21 2 0.07
22 4 0.14
23 7 0.24
ACGTcount: A:0.64, C:0.16, G:0.03, T:0.17
Consensus pattern (21 bp):
AAAAATACAAATAATACAGCC
Found at i:80223957 original size:19 final size:21
Alignment explanation
Indices: 80223935--80223981 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
80223925 TTTTTATTTT
80223935 TTATT-TA-TGTTTT-TTGCCA
1 TTATTATATTGTTTTATT-CCA
80223954 TTATTAATATTGTTTTATTCCA
1 TTATT-ATATTGTTTTATTCCA
80223976 TTATTA
1 TTATTA
80223982 ATTTATTTGC
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
19 5 0.21
21 3 0.12
22 14 0.58
23 2 0.08
ACGTcount: A:0.23, C:0.09, G:0.06, T:0.62
Consensus pattern (21 bp):
TTATTATATTGTTTTATTCCA
Found at i:80223967 original size:22 final size:22
Alignment explanation
Indices: 80223942--80223983 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
80223932 TTTTTATTTA
80223942 TGTTTT-TTGCCATTATTAATAT
1 TGTTTTATT-CCATTATTAATAT
80223964 TGTTTTATTCCATTATTAAT
1 TGTTTTATTCCATTATTAAT
80223984 TTATTTGCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.24, C:0.10, G:0.07, T:0.60
Consensus pattern (22 bp):
TGTTTTATTCCATTATTAATAT
Found at i:80224582 original size:865 final size:858
Alignment explanation
Indices: 80222880--80224602 Score: 3011
Period size: 865 Copynumber: 2.0 Consensus size: 858
80222870 ATATGTATGC
80222880 TTTATTTACGTATTTATTATCTTATTTTTACAATATTATTATTATCATCATCACTTTCATCTTTT
1 TTTATTTACGTATTTATTATCTTATTTTTACAATATTATTATTATCATCATCACTTTCATCTTTT
*
80222945 TTTTCCTGTTTTGTTTAAAACTTCATTTAATATTTTATTTATTTATTTACTTACTTTCAATTTTA
66 TTTTACTGTTTTGTTTAAAACTTCATTTAATATTTTATTTATTTATTTACTTACTTTCAATTTTA
*
80223010 ATCTATCTTATCTTAGTTTTTATTTTATCATTTTATATATTGGCTTGTTTATTTTTTTATTTTTT
131 ATCTATCTTATCTTAGTTTTTATTTTATCATTTTATATAATGGCTTG-TTATTTTTTTATTTTTT
* *
80223075 TTTTATGTTTTTTGCCATTATTAGTATTGTTTTATTCCATTATTAATTTATTTGCCTTTTTTTAA
195 ATTTATGTTTTTTGCCATTATTAATATTGTTTTATTCCATTATTAATTTATTTGCCTTTTTTTAA
*
80223140 ATACTTTTAAATTTTAAATTTATTATTATTGTTATTGTTGTTGCTATGCATTGTTATTACTTATT
260 ATACTTTCAAATTTTAAATTTATTATTATTGTTATTGTTGTTGCTATGCATTGTTATTACTTATT
*
80223205 TTATTCTTTTTGACTGATAATATTAGTATTAAAATGATGTATGTTATATAATCATTGTTGTTGTA
325 TTATTCTTTTTGACTGATAATATTAGTATTAAAATGATGTATGTTATATAATCATTATTGTTGTA
* * * * *
80223270 CATGCTATGAACTGTTTATTAATACATTCGTATTGTAGTCATTGGTCAATTTAATATTTATTTTG
390 CATGCTATGAACTATTTATTAATACATTCGTATTGCAGCCATTGGTAAATTTAATATTTATTTCG
80223335 TGTAACATTTTAAATATTACATTAATTTCGACTCAAATGTATTTTTTTAAAGTAATATTTCGTAT
455 TGTAACATTTTAAATATTACATTAATTTCGACTCAAATGTATTTTTTTAAAGTAATATTTCGTAT
* * *
80223400 TTTGGAATTCGAGAGATCATTCCCTAACTTGTGGGGTCTCGATTTTTTTTGATAAATCCGAATAT
520 TTTGGAATTCGAAAGATCATTCCCTAACTTGCGGGGTCTCGATTTTTTCTGATAAATCCGAATAT
80223465 ATGAACTATTTTTAAAAAATACATTTTTAAAATTATCTCGGGAATAAAAAAAGGATCGTGCCCCA
585 ATGAACTATTTTTAAAAAATACATTTTTAAAATTATCTCGGGAATAAAAAAAGGATCGTGCCCCA
* *
80223530 ACTTACGGGATATGATTTCTTCCCCGAAATCGAGATGATCAAAATTTCCTAAAATAAATAAATTT
650 ACTTACGGGATATAATTTCTTCCCCGAAACCGAGATGATCAAAATTTCCTAAAATAAATAAATTT
* *
80223595 TCGTTGTTTATTCTCGTTTCGAGGATTTAAGGTATTGCATCCTAACTTACGGGATGTAACCCCTT
715 TCGTTGTTTATTCTCGTTTCGAGAATTTAAGGTATTGCATCCTAACTTACGGGACGTAACCCCTT
* * *
80223660 TTTTCGATTAACGTGAAATATTTTCTTTGTACAATTCAATCAGGTGATTTTGTAACAAAGGATTG
780 TTCTCGATTAACGTGAAACATTTTCTTTGTAAAATTCAATCAGGTGATTTTGTAACAAAGGATTG
80223725 TATTCCAAATCTCA
845 TATTCCAAATCTCA
*
80223739 TTTATTTACGTATTTATTATCTTATTTTTACAATATTATTATTATTATCATCATCATTTTCATCT
1 TTTATTTACGTATTTATTATCTTATTTTTAC-A-A-TATTATTATTATCATCATCACTTTCA--T
*
80223804 CTTTTTTTTTACTGTTTTGTTTAATACTTCATTTAATATTTTATTTATTTATTTACTTACTTTCA
61 C-TTTTTTTTACTGTTTTGTTTAAAACTTCATTTAATATTTTATTTATTTATTTACTTACTTTCA
*
80223869 ATTTTCATCTATCTTATCTTAGTTTTTATTTTATCATTTTATATAATGGCTTG-T-TTTTTTTAT
125 ATTTTAATCTATCTTATCTTAGTTTTTATTTTATCATTTTATATAATGGCTTGTTATTTTTTTAT
80223932 TTTTTATTTATGTTTTTTGCCATTATTAATATTGTTTTATTCCATTATTAATTTATTTGCCTTTT
190 TTTTTATTTATGTTTTTTGCCATTATTAATATTGTTTTATTCCATTATTAATTTATTTGCC-TTT
*
80223997 TTTTAAATACTTTCAAATTTTAAATTTATTATTATTGTTATTGTTGTTGTTATGCATTGTTATTA
254 TTTTAAATACTTTCAAATTTTAAATTTATTATTATTGTTATTGTTGTTGCTATGCATTGTTATTA
* * *
80224062 CTTATTTTATTCTTTTTGATTGATAATATTAGTATTAAAATGATGTTTGTTATGTAATCATTATT
319 CTTATTTTATTCTTTTTGACTGATAATATTAGTATTAAAATGATGTATGTTATATAATCATTATT
*
80224127 GTTGTACATGCTATGAATTATTTATTAATACATTCGTATTGCAGCCATTGGTAAATTTAATATTT
384 GTTGTACATGCTATGAACTATTTATTAATACATTCGTATTGCAGCCATTGGTAAATTTAATATTT
80224192 ATTTCGTGTAACATTTTAAATATTACATTAATTTCGACTCAAATGTATTTTTTTAAAAGTAATAT
449 ATTTCGTGTAACATTTTAAATATTACATTAATTTCGACTCAAATGTATTTTTTT-AAAGTAATAT
* **
80224257 TTTGTATTTTGGAATTCGAAAGATTGTTCCCTAACTTGCGGGGTCTCGATTTTTTCTGATAAATC
513 TTCGTATTTTGGAATTCGAAAGATCATTCCCTAACTTGCGGGGTCTCGATTTTTTCTGATAAATC
80224322 CGAATATATGAACTATTTTTAAAAAATACATTTTTAAAATTATCTCGGGAATCAAAAAAAGGATC
578 CGAATATATGAACTATTTTTAAAAAATACATTTTTAAAATTATCTCGGGAAT-AAAAAAAGGATC
*
80224387 GTGTCCCAACTTACGGGATATAATTTCTTCTCCC-AAACCGAGATGATCAAAATTTCCTAAAATA
642 GTGCCCCAACTTACGGGATATAATTTCTTC-CCCGAAACCGAGATGATCAAAATTTCCTAAAATA
*
80224451 AATAAATTTTCTTTGTTTATTCTCGTTTCGAGAATTTAAGGTATTGCATCCTAACTTACGGGACG
706 AATAAATTTTCGTTGTTTATTCTCGTTTCGAGAATTTAAGGTATTGCATCCTAACTTACGGGACG
*
80224516 TAATCCCTTTTCTCGATTAACGTGAAACATTTTCTTTGTAAAATTCAATCAGGTGATTTTGTAAC
771 TAACCCCTTTTCTCGATTAACGTGAAACATTTTCTTTGTAAAATTCAATCAGGTGATTTTGTAAC
80224581 AAAGGATTGTATTCCAAATCTC
836 AAAGGATTGTATTCCAAATCTC
80224603 CTCAAAGTTT
Statistics
Matches: 819, Mismatches: 35, Indels: 14
0.94 0.04 0.02
Matches are distributed among these distances:
859 31 0.04
860 1 0.00
861 1 0.00
862 93 0.11
863 241 0.29
864 123 0.15
865 326 0.40
866 3 0.00
ACGTcount: A:0.29, C:0.12, G:0.11, T:0.49
Consensus pattern (858 bp):
TTTATTTACGTATTTATTATCTTATTTTTACAATATTATTATTATCATCATCACTTTCATCTTTT
TTTTACTGTTTTGTTTAAAACTTCATTTAATATTTTATTTATTTATTTACTTACTTTCAATTTTA
ATCTATCTTATCTTAGTTTTTATTTTATCATTTTATATAATGGCTTGTTATTTTTTTATTTTTTA
TTTATGTTTTTTGCCATTATTAATATTGTTTTATTCCATTATTAATTTATTTGCCTTTTTTTAAA
TACTTTCAAATTTTAAATTTATTATTATTGTTATTGTTGTTGCTATGCATTGTTATTACTTATTT
TATTCTTTTTGACTGATAATATTAGTATTAAAATGATGTATGTTATATAATCATTATTGTTGTAC
ATGCTATGAACTATTTATTAATACATTCGTATTGCAGCCATTGGTAAATTTAATATTTATTTCGT
GTAACATTTTAAATATTACATTAATTTCGACTCAAATGTATTTTTTTAAAGTAATATTTCGTATT
TTGGAATTCGAAAGATCATTCCCTAACTTGCGGGGTCTCGATTTTTTCTGATAAATCCGAATATA
TGAACTATTTTTAAAAAATACATTTTTAAAATTATCTCGGGAATAAAAAAAGGATCGTGCCCCAA
CTTACGGGATATAATTTCTTCCCCGAAACCGAGATGATCAAAATTTCCTAAAATAAATAAATTTT
CGTTGTTTATTCTCGTTTCGAGAATTTAAGGTATTGCATCCTAACTTACGGGACGTAACCCCTTT
TCTCGATTAACGTGAAACATTTTCTTTGTAAAATTCAATCAGGTGATTTTGTAACAAAGGATTGT
ATTCCAAATCTCA
Found at i:80236324 original size:46 final size:46
Alignment explanation
Indices: 80236254--80236548 Score: 295
Period size: 46 Copynumber: 6.2 Consensus size: 46
80236244 AGTGGAACAA
* * * * * *
80236254 ATTAAAGCTGAAGGCAACGGATCTTGTTTCCTTGACATTGTAATAG
1 ATTAAAGCTGAAGGCAACGAATCTTATTTCCTTGGCGTCGCAATAG
* * *
80236300 ATTAAAGCTGAACGCTACGAATCTTATTT-CTCTGGCGTCGCAGTAG
1 ATTAAAGCTGAAGGCAACGAATCTTATTTCCT-TGGCGTCGCAATAG
* *
80236346 ATTAAAGCTGAAGGCAACGAATCTCATTTCCTTGGCGTTGCAATGGAACAG
1 ATTAAAGCTGAAGGCAACGAATCTTATTTCCTTGGCGTCGCAAT-----AG
* *
80236397 ATTAAAGCTGAAGGCAACGAATCTTATTTCCCTGGCGTCGCAGTAG
1 ATTAAAGCTGAAGGCAACGAATCTTATTTCCTTGGCGTCGCAATAG
* * * *
80236443 ATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGTAGTGGGACAG
1 ATTAAAGCTGAAGGCAACGAATCTTATTTCCTTGGCGTCGCA-----ATAG
* * * *
80236494 ATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCATCGCAGTAG
1 ATTAAAGCTGAAGGCAACGAATCTTATTTCCTTGGCGTCGCAATAG
80236540 ATTAAAGCT
1 ATTAAAGCT
80236549 ATAAATCACA
Statistics
Matches: 207, Mismatches: 30, Indels: 24
0.79 0.11 0.09
Matches are distributed among these distances:
45 2 0.01
46 121 0.58
47 2 0.01
51 82 0.40
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (46 bp):
ATTAAAGCTGAAGGCAACGAATCTTATTTCCTTGGCGTCGCAATAG
Found at i:80236420 original size:97 final size:97
Alignment explanation
Indices: 80236298--80236548 Score: 412
Period size: 97 Copynumber: 2.6 Consensus size: 97
80236288 ACATTGTAAT
* * *
80236298 AGATTAAAGCTGAACGCTACGAATCTTATTTCTCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAA
1 AGATTAAAGCTGAAGGCAACGAATCTTATTTCCCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAA
80236363 CGAATCTCATTTCCTTGGCGTTGCAATGGAAC
66 CGAATCTCATTTCCTTGGCGTTGCAATGGAAC
*
80236395 AGATTAAAGCTGAAGGCAACGAATCTTATTTCCCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAG
1 AGATTAAAGCTGAAGGCAACGAATCTTATTTCCCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAA
* * * *
80236460 CGAATCTTATTTCCTTGGCGTTGTAGTGGGAC
66 CGAATCTCATTTCCTTGGCGTTGCAATGGAAC
* *
80236492 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCATCGCAGTAGATTAAAGCT
1 AGATTAAAGCTGAAGGCAACGAATCTTATTTCCCTGGCGTCGCAGTAGATTAAAGCT
80236549 ATAAATCACA
Statistics
Matches: 144, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
97 144 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (97 bp):
AGATTAAAGCTGAAGGCAACGAATCTTATTTCCCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAA
CGAATCTCATTTCCTTGGCGTTGCAATGGAAC
Found at i:80236633 original size:41 final size:43
Alignment explanation
Indices: 80236560--80236665 Score: 108
Period size: 41 Copynumber: 2.5 Consensus size: 43
80236550 TAAATCACAG
* * * * * *
80236560 ATCTTATCTCTCTGAAGTTGTAGTAGAATAGA-TCATGGC-AA
1 ATCTTATCTCCCTGAAGTTGCAATAGAATAGATTAAAGCCAAA
* *
80236601 ATCTTATCTCCCTGAAGTTGCAATGGAGTAGATTAAAGCCAAAA
1 ATCTTATCTCCCTGAAGTTGCAATAGAATAGATTAAAGCC-AAA
*
80236645 ATCCTATCTCCCTGAAGTTGC
1 ATCTTATCTCCCTGAAGTTGC
80236666 TGTGGAGCAG
Statistics
Matches: 53, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
41 27 0.51
42 4 0.08
44 22 0.42
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (43 bp):
ATCTTATCTCCCTGAAGTTGCAATAGAATAGATTAAAGCCAAA
Found at i:80236684 original size:44 final size:44
Alignment explanation
Indices: 80236599--80236685 Score: 120
Period size: 44 Copynumber: 2.0 Consensus size: 44
80236589 AGATCATGGC
* * *
80236599 AAATCTTATCTCCCTGAAGTTGCAATGGAGTAGATTAAAGCCAA
1 AAATCCTATCTCCCTGAAGTTGCAATGGAGCAGATCAAAGCCAA
** *
80236643 AAATCCTATCTCCCTGAAGTTGCTGTGGAGCAGATCGAAGCCA
1 AAATCCTATCTCCCTGAAGTTGCAATGGAGCAGATCAAAGCCA
80236686 CCAGCCTTAT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (44 bp):
AAATCCTATCTCCCTGAAGTTGCAATGGAGCAGATCAAAGCCAA
Found at i:80238162 original size:15 final size:15
Alignment explanation
Indices: 80238128--80238162 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
80238118 TTTTTTGTTA
80238128 ATATTATTTTTATAT
1 ATATTATTTTTATAT
* *
80238143 CTATTATTTTTATGT
1 ATATTATTTTTATAT
80238158 ATATT
1 ATATT
80238163 TAAATCTTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.66
Consensus pattern (15 bp):
ATATTATTTTTATAT
Found at i:80238450 original size:19 final size:21
Alignment explanation
Indices: 80238428--80238474 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
80238418 TTTTTATTTT
80238428 TTATT-TA-TGTTTT-TTGCCA
1 TTATTATATTGTTTTATT-CCA
80238447 TTATTAGTATTGTTTTATTCCA
1 TTATTA-TATTGTTTTATTCCA
80238469 TTATTA
1 TTATTA
80238475 ATTTATTTGC
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
19 5 0.21
21 2 0.08
22 15 0.62
23 2 0.08
ACGTcount: A:0.21, C:0.09, G:0.09, T:0.62
Consensus pattern (21 bp):
TTATTATATTGTTTTATTCCA
Found at i:80242672 original size:101 final size:101
Alignment explanation
Indices: 80242497--80242901 Score: 774
Period size: 101 Copynumber: 4.0 Consensus size: 101
80242487 GTTATGCCCC
* * *
80242497 ATTGCTAGTGTTAAGGTAATACAGGTCAAAATAGTTTGTGCCTGCAACTCAGGGACTGGCCGAGT
1 ATTGCTAGTGTTAAGGCAATACAGGTCAAGACAGTTTGTGCCTGCAACTCAGGGACTGGCCGAGT
80242562 GTGAATTCTCGTATAAGGATGATGGCTACAAAAAGA
66 GTGAATTCTCGTATAAGGATGATGGCTACAAAAAGA
80242598 ATTGCTAGTGTTAAGGCAATACAGGTCAAGACAGTTTGTGCCTGCAACTCAGGGACTGGCCGAGT
1 ATTGCTAGTGTTAAGGCAATACAGGTCAAGACAGTTTGTGCCTGCAACTCAGGGACTGGCCGAGT
80242663 GTGAATTCTCGTATAAGGATGATGGCTACAAAAAGA
66 GTGAATTCTCGTATAAGGATGATGGCTACAAAAAGA
80242699 ATTGCTAGTGTTAAGGCAATACAGGTCAAGACAGTTTGTGCCTGCAACTCAGGGACTGGCCGAGT
1 ATTGCTAGTGTTAAGGCAATACAGGTCAAGACAGTTTGTGCCTGCAACTCAGGGACTGGCCGAGT
80242764 GTGAATTCTCGTATAAGGATGATGGCTACAAAAAGA
66 GTGAATTCTCGTATAAGGATGATGGCTACAAAAAGA
80242800 ATTGCTAGTGTTAAGGCAATACAGGTCAAGACAGTTTGTGCCTGCAACTCAGGGACTGGCCGAGT
1 ATTGCTAGTGTTAAGGCAATACAGGTCAAGACAGTTTGTGCCTGCAACTCAGGGACTGGCCGAGT
*
80242865 GTGAATTCTCGTATAAGGATGATGGCTATAAAAAGA
66 GTGAATTCTCGTATAAGGATGATGGCTACAAAAAGA
80242901 A
1 A
80242902 GGTTCGTGAG
Statistics
Matches: 300, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
101 300 1.00
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.25
Consensus pattern (101 bp):
ATTGCTAGTGTTAAGGCAATACAGGTCAAGACAGTTTGTGCCTGCAACTCAGGGACTGGCCGAGT
GTGAATTCTCGTATAAGGATGATGGCTACAAAAAGA
Found at i:80245307 original size:15 final size:15
Alignment explanation
Indices: 80245287--80245317 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
80245277 TCTTTCAGTC
80245287 TTTTTGAATAATTAT
1 TTTTTGAATAATTAT
80245302 TTTTTGAATAATTAT
1 TTTTTGAATAATTAT
80245317 T
1 T
80245318 CTTTCATTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.61
Consensus pattern (15 bp):
TTTTTGAATAATTAT
Found at i:80246124 original size:11 final size:10
Alignment explanation
Indices: 80246103--80246147 Score: 63
Period size: 10 Copynumber: 4.4 Consensus size: 10
80246093 AGATTCAATC
*
80246103 AAAAAAGAAA
1 AAAAAACAAA
*
80246113 ACAAAACAAA
1 AAAAAACAAA
80246123 AAAAAACATAA
1 AAAAAACA-AA
80246134 AAAAAACAAA
1 AAAAAACAAA
80246144 AAAA
1 AAAA
80246148 GGGAAAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
10 21 0.68
11 10 0.32
ACGTcount: A:0.87, C:0.09, G:0.02, T:0.02
Consensus pattern (10 bp):
AAAAAACAAA
Found at i:80246175 original size:21 final size:18
Alignment explanation
Indices: 80246103--80246176 Score: 58
Period size: 20 Copynumber: 3.7 Consensus size: 18
80246093 AGATTCAATC
80246103 AAAAAAGAAAACAAAACAAA
1 AAAAAAGAAAA-AAAA-AAA
*
80246123 AAAAAACATAAAAAAAACAA
1 AAAAAAGA-AAAAAAAA-AA
*
80246143 AAAAAGGGAAAAAAATAAGAA
1 AAAAA-AGAAAAAAA-AA-AA
*
80246164 AAAACAGAAAAAA
1 AAAAAAGAAAAAA
80246177 TAGGACTGAT
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
19 1 0.02
20 31 0.70
21 12 0.27
ACGTcount: A:0.82, C:0.07, G:0.08, T:0.03
Consensus pattern (18 bp):
AAAAAAGAAAAAAAAAAA
Found at i:80246669 original size:13 final size:14
Alignment explanation
Indices: 80246651--80246692 Score: 59
Period size: 13 Copynumber: 3.0 Consensus size: 14
80246641 GAAAAAGAAG
80246651 TGAAAAAATGAAAA
1 TGAAAAAATGAAAA
80246665 T-AAAAAATGAAAA
1 TGAAAAAATGAAAA
*
80246678 TGGAAAAATGGAAAA
1 TGAAAAAAT-GAAAA
80246693 AAATAAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 13 0.52
14 7 0.28
15 5 0.20
ACGTcount: A:0.69, C:0.00, G:0.17, T:0.14
Consensus pattern (14 bp):
TGAAAAAATGAAAA
Found at i:80248103 original size:88 final size:88
Alignment explanation
Indices: 80248005--80248483 Score: 694
Period size: 88 Copynumber: 5.4 Consensus size: 88
80247995 AAGATAGCAA
* * *
80248005 ATCTTACCTTCCTGTAATGACAGAGAAGCAGATCAAA-AGTACCAGCCTTGTCTCCCTGGGCAGT
1 ATCTTGCCTTCCTGTACTGACAGAGAAGCAGATCAAAGA-TACCAGCTTTGTCTCCCTGGGCAGT
* *
80248069 AGTGGAGTAGGCTGAAAATGATAG
65 AGTGGAGTAGGTTGAAAATGACAG
* * * * *
80248093 ATCTTGCCTTCCTATATTGATAGCGAAGCAGATCAAAGATACAAGCTTTGTCTCCCTGGGCAGTA
1 ATCTTGCCTTCCTGTACTGACAGAGAAGCAGATCAAAGATACCAGCTTTGTCTCCCTGGGCAGTA
* *
80248158 GTGGAGTAGGTTGAAAATGGCAA
66 GTGGAGTAGGTTGAAAATGACAG
*
80248181 ATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGATACCAG-TCTTGTCTCCCTGGGCAGT
1 ATCTTGCCTTCCTGTACTGACAGAGAAGCAGATCAAAGATACCAGCT-TTGTCTCCCTGGGCAGT
80248245 AGTGGAGTAGGTTGAAAATGACAG
65 AGTGGAGTAGGTTGAAAATGACAG
* *
80248269 ATCTTGCCTTCCTGTACTGACAGAGAAGTAGATCGAAGATACCAGCTTTGTCTCCCTGGGCAGTA
1 ATCTTGCCTTCCTGTACTGACAGAGAAGCAGATCAAAGATACCAGCTTTGTCTCCCTGGGCAGTA
80248334 GTGGAGTAGGTTGAAAAT-AGCAG
66 GTGGAGTAGGTTGAAAATGA-CAG
* * * *
80248357 ATCTTGCCTTCTTGTACTGACAGAGAAGCAGATCGAAGATACCAGCTTTGTCTCCCTCGGCAGCA
1 ATCTTGCCTTCCTGTACTGACAGAGAAGCAGATCAAAGATACCAGCTTTGTCTCCCTGGGCAGTA
*
80248422 GTGGAGTAGGTCGAAAATGACAG
66 GTGGAGTAGGTTGAAAATGACAG
* * * *
80248445 ATCTTGCCTTCTTGTACTGGCAGCGAAGCAGATCGAAGA
1 ATCTTGCCTTCCTGTACTGACAGAGAAGCAGATCAAAGA
80248484 CATTAGTCTT
Statistics
Matches: 359, Mismatches: 27, Indels: 10
0.91 0.07 0.03
Matches are distributed among these distances:
87 2 0.01
88 354 0.99
89 3 0.01
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (88 bp):
ATCTTGCCTTCCTGTACTGACAGAGAAGCAGATCAAAGATACCAGCTTTGTCTCCCTGGGCAGTA
GTGGAGTAGGTTGAAAATGACAG
Found at i:80248574 original size:50 final size:50
Alignment explanation
Indices: 80248518--80248641 Score: 185
Period size: 50 Copynumber: 2.5 Consensus size: 50
80248508 GCAATTAAAA
* * * * *
80248518 AGATTGAAGCCATAATGGTGGATCTTATTTTTCTGGCGTCGCATCGGAGC
1 AGATTGAAGCCACAATGGCGGATCTTATTTTCCTAGCGTCGCAGCGGAGC
*
80248568 ATATTGAAGCCACAATGGCGGATCTTATTTTCCTAGCGTCGCAGCGGAGC
1 AGATTGAAGCCACAATGGCGGATCTTATTTTCCTAGCGTCGCAGCGGAGC
*
80248618 AGATTGAAGCTACAATGGCGGATC
1 AGATTGAAGCCACAATGGCGGATC
80248642 ATATCTCCCT
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 66 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (50 bp):
AGATTGAAGCCACAATGGCGGATCTTATTTTCCTAGCGTCGCAGCGGAGC
Found at i:80248788 original size:50 final size:50
Alignment explanation
Indices: 80248734--80249006 Score: 157
Period size: 50 Copynumber: 5.5 Consensus size: 50
80248724 TAAGTGAAAA
80248734 AGATTGAAGCCACAAC-G-ATGAATCTTACTTCCCTGACAGTGCAGTGGAGC
1 AGATTGAAGCCACAACGGCA-G-ATCTTACTTCCCTGACAGTGCAGTGGAGC
* *** * * * *
80248784 AGATTGAAGTCACAACGGCAGATCTGGTTTCCCCGACAGCGCAAT-TA--
1 AGATTGAAGCCACAACGGCAGATCTTACTTCCCTGACAGTGCAGTGGAGC
* * *
80248831 ATATTGAAGCCACAACGGCATATCTTACTTCCCT-AGCGGTGCAGTGGAGC
1 AGATTGAAGCCACAACGGCAGATCTTACTTCCCTGA-CAGTGCAGTGGAGC
* * * *** * * * * **
80248881 AGATTGAAGTCACAACGACGGATCTGGTTTCCCCGACAGCGCAAT-TAAA
1 AGATTGAAGCCACAACGGCAGATCTTACTTCCCTGACAGTGCAGTGGAGC
* * * * * *
80248930 ACGATTGAAGCCACAATGGCAGATCTTACCT-CCTTAGTAGTGCAGTTGAAC
1 A-GATTGAAGCCACAACGGCAGATCTTACTTCCCTGA-CAGTGCAGTGGAGC
* * *
80248981 AGATTGAAGCTACGACGGCGGATCTT
1 AGATTGAAGCCACAACGGCAGATCTT
80249007 GTTTCCTCGA
Statistics
Matches: 160, Mismatches: 53, Indels: 20
0.69 0.23 0.09
Matches are distributed among these distances:
46 1 0.01
47 33 0.21
48 1 0.01
49 6 0.04
50 112 0.70
51 6 0.04
52 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.23
Consensus pattern (50 bp):
AGATTGAAGCCACAACGGCAGATCTTACTTCCCTGACAGTGCAGTGGAGC
Found at i:80248856 original size:97 final size:99
Alignment explanation
Indices: 80248735--80249018 Score: 355
Period size: 97 Copynumber: 2.9 Consensus size: 99
80248725 AAGTGAAAAA
80248735 GATTGAAGCCACAAC-G-ATGAATCTTACTTCCCT-GACAGTGCAGTGGAGCAGATTGAAGTCAC
1 GATTGAAGCCACAACGGCAT--ATCTTACTTCCCTAG-CAGTGCAGTGGAGCAGATTGAAGTCAC
*
80248797 AACGGCAGATCTGGTTTCCCCGACAGCGCAATT-AA-
63 AACGGCGGATCTGGTTTCCCCGACAGCGCAATTAAAC
* *
80248832 TATTGAAGCCACAACGGCATATCTTACTTCCCTAGCGGTGCAGTGGAGCAGATTGAAGTCACAAC
1 GATTGAAGCCACAACGGCATATCTTACTTCCCTAGCAGTGCAGTGGAGCAGATTGAAGTCACAAC
*
80248897 GACGGATCTGGTTTCCCCGACAGCGCAATTAAAAC
66 GGCGGATCTGGTTTCCCCGACAGCGCAATT-AAAC
* * * * * * * *
80248932 GATTGAAGCCACAATGGCAGATCTTACCTCCTTAGTAGTGCAGTTGAACAGATTGAAG-CTACGA
1 GATTGAAGCCACAACGGCATATCTTACTTCCCTAGCAGTGCAGTGGAGCAGATTGAAGTC-ACAA
* *
80248996 CGGCGGATCTTGTTTCCTCGACA
65 CGGCGGATCTGGTTTCCCCGACA
80249019 TTGTAATTAG
Statistics
Matches: 163, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
97 84 0.52
98 2 0.01
99 5 0.03
100 72 0.44
ACGTcount: A:0.29, C:0.25, G:0.24, T:0.23
Consensus pattern (99 bp):
GATTGAAGCCACAACGGCATATCTTACTTCCCTAGCAGTGCAGTGGAGCAGATTGAAGTCACAAC
GGCGGATCTGGTTTCCCCGACAGCGCAATTAAAC
Found at i:80249973 original size:9 final size:9
Alignment explanation
Indices: 80249959--80250002 Score: 52
Period size: 9 Copynumber: 4.9 Consensus size: 9
80249949 ATTAATCTAG
80249959 TTATTATAA
1 TTATTATAA
80249968 TTATTATAA
1 TTATTATAA
* **
80249977 TTGTTATCT
1 TTATTATAA
*
80249986 TTATTATTA
1 TTATTATAA
80249995 TTATTATA
1 TTATTATA
80250003 CTCACATATA
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (9 bp):
TTATTATAA
Found at i:80252240 original size:5 final size:5
Alignment explanation
Indices: 80252230--80252255 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
80252220 ATTAAAATTG
80252230 AATCC AATCC AATCC AATCC AATCC A
1 AATCC AATCC AATCC AATCC AATCC A
80252256 TGTGAGTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.38, G:0.00, T:0.19
Consensus pattern (5 bp):
AATCC
Found at i:80254382 original size:46 final size:46
Alignment explanation
Indices: 80254315--80254405 Score: 173
Period size: 46 Copynumber: 2.0 Consensus size: 46
80254305 ACGACCACGT
*
80254315 AGACATCCTCATAGAAATCCTCGAACGCCTCGACGGCCGTTCCCTC
1 AGACATCCTCATAGAAATCCTCAAACGCCTCGACGGCCGTTCCCTC
80254361 AGACATCCTCATAGAAATCCTCAAACGCCTCGACGGCCGTTCCCT
1 AGACATCCTCATAGAAATCCTCAAACGCCTCGACGGCCGTTCCCT
80254406 TTGCGTCGCC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.25, C:0.38, G:0.16, T:0.20
Consensus pattern (46 bp):
AGACATCCTCATAGAAATCCTCAAACGCCTCGACGGCCGTTCCCTC
Found at i:80256213 original size:22 final size:21
Alignment explanation
Indices: 80256177--80256230 Score: 56
Period size: 22 Copynumber: 2.6 Consensus size: 21
80256167 TTTTTTTATA
** *
80256177 ATTTATAAGAATTTATTATATT
1 ATTTATAAGTTTTTATGA-ATT
80256199 ATTTATAAGTTTTTATGAATT
1 ATTTATAAGTTTTTATGAATT
*
80256220 -TTCATAAGTTT
1 ATTTATAAGTTT
80256231 CCATAAAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 10 0.36
21 3 0.11
22 15 0.54
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.56
Consensus pattern (21 bp):
ATTTATAAGTTTTTATGAATT
Found at i:80256221 original size:10 final size:9
Alignment explanation
Indices: 80256169--80256575 Score: 61
Period size: 10 Copynumber: 42.8 Consensus size: 9
80256159 TAAATGATTT
80256169 TTTTTATAA
1 TTTTTATAA
* *
80256178 TTTATAAGAA
1 TTT-TTATAA
80256188 TTTATTAT-A
1 TTT-TTATAA
80256197 TTATTTATAA
1 TT-TTTATAA
80256207 GTTTTTATGAA
1 -TTTTTAT-AA
*
80256218 TTTTCATAA
1 TTTTTATAA
**
80256227 GTTTCCATAAA
1 -TTTTTAT-AA
*
80256238 ATTTTA-AA
1 TTTTTATAA
*
80256246 TATTTTAAATA
1 T-TTTTATA-A
80256257 TATTTTATTAA
1 T-TTTTA-TAA
*
80256268 -TTTTATATT
1 TTTTTATA-A
80256277 TTTTTATAA
1 TTTTTATAA
*
80256286 GTTATTAT-A
1 -TTTTTATAA
*
80256295 -TTTTATGA
1 TTTTTATAA
*
80256303 TTTTTATGA
1 TTTTTATAA
*
80256312 TTTCCTATAA
1 TTT-TTATAA
*
80256322 CTTTTTTTAA
1 -TTTTTATAA
*
80256332 GTTTATATCAA
1 -TTTTTAT-AA
*
80256343 TTTTAAT-A
1 TTTTTATAA
80256351 -TTTT-TAA
1 TTTTTATAA
*
80256358 TATTTA-ATA
1 TTTTTATA-A
* *
80256367 TTTTTTTATG
1 TTTTTATA-A
*
80256377 TTTTTAAGAA
1 TTTTT-ATAA
80256387 TTTTTAT-A
1 TTTTTATAA
80256395 TGTTTTCATAAA
1 T-TTTT-AT-AA
*
80256407 TTTTTAAACA
1 TTTTTATA-A
*
80256417 TGTTTAATTAA
1 T-TTTTA-TAA
* *
80256428 TTTGATAAAA
1 TTT-TTATAA
**
80256438 AATT-ATAA
1 TTTTTATAA
80256446 TTTATTATAA
1 TTT-TTATAA
* *
80256456 TTCATTAGAA
1 TT-TTTATAA
80256466 TTTTTAT-A
1 TTTTTATAA
80256474 TTTTTATAA
1 TTTTTATAA
*
80256483 TATTTATAA
1 TTTTTATAA
*
80256492 GTTTGTATAA
1 -TTTTTATAA
*
80256502 ATTTTA-ATA
1 TTTTTATA-A
* *
80256511 GTTTTAT-T
1 TTTTTATAA
80256519 TTTTTATAAA
1 TTTTTAT-AA
80256529 TATTTT-TAA
1 T-TTTTATAA
80256538 TAATTTTATATA
1 T--TTTTATA-A
* *
80256550 TATTTATGA
1 TTTTTATAA
*
80256559 TTTTTAATAT
1 TTTTT-ATAA
80256569 TTTTTAT
1 TTTTTAT
80256576 GAAAAAATAT
Statistics
Matches: 288, Mismatches: 63, Indels: 94
0.65 0.14 0.21
Matches are distributed among these distances:
6 1 0.00
7 9 0.03
8 31 0.11
9 78 0.27
10 125 0.43
11 38 0.13
12 6 0.02
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.58
Consensus pattern (9 bp):
TTTTTATAA
Found at i:80256487 original size:19 final size:19
Alignment explanation
Indices: 80256471--80256572 Score: 77
Period size: 18 Copynumber: 5.4 Consensus size: 19
80256461 TAGAATTTTT
80256471 ATATTTTTATAATATTTATA
1 ATATTTTTATAAT-TTTATA
* * *
80256491 A-GTTTGTATAAATTT-TA
1 ATATTTTTATAATTTTATA
* **
80256508 ATAGTTTTATTTTTTTATAA
1 ATATTTTTATAATTTTAT-A
80256528 ATATTTTTAATAATTTTAT-
1 ATATTTTT-ATAATTTTATA
* *
80256547 ATATATTTATGATTTT-TA
1 ATATTTTTATAATTTTATA
80256565 ATATTTTT
1 ATATTTTT
80256573 TATGAAAAAA
Statistics
Matches: 62, Mismatches: 15, Indels: 12
0.70 0.17 0.13
Matches are distributed among these distances:
17 4 0.06
18 25 0.40
19 16 0.26
20 9 0.15
21 8 0.13
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (19 bp):
ATATTTTTATAATTTTATA
Found at i:80256571 original size:9 final size:9
Alignment explanation
Indices: 80256503--80256572 Score: 52
Period size: 9 Copynumber: 7.4 Consensus size: 9
80256493 TTTGTATAAA
*
80256503 TTTTAATAG
1 TTTTAATAT
* *
80256512 TTTTATTTT
1 TTTTAATAT
80256521 TTTATAAATAT
1 TTT-T-AATAT
*
80256532 TTTTAATAA
1 TTTTAATAT
80256541 TTTTATATAT
1 TTTTA-ATAT
*
80256551 ATTT-ATGAT
1 TTTTAAT-AT
80256560 TTTTAATAT
1 TTTTAATAT
80256569 TTTT
1 TTTT
80256573 TATGAAAAAA
Statistics
Matches: 47, Mismatches: 9, Indels: 10
0.71 0.14 0.15
Matches are distributed among these distances:
8 2 0.04
9 29 0.62
10 10 0.21
11 6 0.13
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (9 bp):
TTTTAATAT
Found at i:80259226 original size:9 final size:9
Alignment explanation
Indices: 80259214--80259240 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
80259204 ATTCGGTCAG
80259214 TTAACCGAA
1 TTAACCGAA
80259223 TTAACCGAA
1 TTAACCGAA
80259232 TTAACCGAA
1 TTAACCGAA
80259241 AATTATATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.44, C:0.22, G:0.11, T:0.22
Consensus pattern (9 bp):
TTAACCGAA
Found at i:80259341 original size:6 final size:6
Alignment explanation
Indices: 80259330--80259358 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
80259320 ACTTTTAGAC
80259330 TTTAGT TTTAGT TTTAGT TTTAGT TTTAG
1 TTTAGT TTTAGT TTTAGT TTTAGT TTTAG
80259359 AATTTTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.17, T:0.66
Consensus pattern (6 bp):
TTTAGT
Found at i:80259382 original size:20 final size:20
Alignment explanation
Indices: 80259314--80259371 Score: 66
Period size: 18 Copynumber: 3.0 Consensus size: 20
80259304 ATTAAACTAT
* *
80259314 TTTTAGACTTTTAGACTTTAG
1 TTTTAGAATTTTAG-TTTTAG
80259335 TTTTAG--TTTTAGTTTTAG
1 TTTTAGAATTTTAGTTTTAG
*
80259353 TTTTAGAATTTTATTTTTA
1 TTTTAGAATTTTAGTTTTA
80259372 TTTATTAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
18 11 0.33
19 6 0.18
20 10 0.30
21 6 0.18
ACGTcount: A:0.22, C:0.03, G:0.12, T:0.62
Consensus pattern (20 bp):
TTTTAGAATTTTAGTTTTAG
Found at i:80265206 original size:18 final size:19
Alignment explanation
Indices: 80265170--80265207 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
80265160 GCATACATCG
**
80265170 AATACAAAAAGCAGAGGAA
1 AATACAAAAAAAAGAGGAA
80265189 AATACAAAAAAAAG-GGAA
1 AATACAAAAAAAAGAGGAA
80265207 A
1 A
80265208 CAAGGAACGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.68, C:0.08, G:0.18, T:0.05
Consensus pattern (19 bp):
AATACAAAAAAAAGAGGAA
Found at i:80265455 original size:16 final size:16
Alignment explanation
Indices: 80265426--80265468 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
80265416 GTGGCCGGAG
80265426 CTCTC-CCCTT-TCCC
1 CTCTCTCCCTTCTCCC
*
80265440 CTCTCTTCCTTCTCCC
1 CTCTCTCCCTTCTCCC
80265456 CTCTCTCCCTTCT
1 CTCTCTCCCTTCT
80265469 TTCCTTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 5 0.20
15 4 0.16
16 16 0.64
ACGTcount: A:0.00, C:0.58, G:0.00, T:0.42
Consensus pattern (16 bp):
CTCTCTCCCTTCTCCC
Found at i:80265457 original size:23 final size:24
Alignment explanation
Indices: 80265427--80265474 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 24
80265417 TGGCCGGAGC
*
80265427 TCTCCCCT-T-TCCCCTCTCTTCCT
1 TCTCCCCTCTCTCCCTTCT-TTCCT
80265450 TCTCCCCTCTCTCCCTTCTTTCCT
1 TCTCCCCTCTCTCCCTTCTTTCCT
80265474 T
1 T
80265475 TTTTTTTCTC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 8 0.36
24 7 0.32
25 7 0.32
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (24 bp):
TCTCCCCTCTCTCCCTTCTTTCCT
Found at i:80266315 original size:45 final size:43
Alignment explanation
Indices: 80266285--80266373 Score: 142
Period size: 45 Copynumber: 2.0 Consensus size: 43
80266275 TATATTTCTT
80266285 ACTGTTCATATACTTTTATGTCGTTGTATGTACATTTTATTATTC
1 ACTGTTCATATACTTTTATGTCGTTGTATGT--ATTTTATTATTC
80266330 ACTGTTCATATACTTTTATGTCGTTGTATGTATATTTTATTATT
1 ACTGTTCATATACTTTTATGTCGTTGTATG--TATTTTATTATT
80266374 AGTTATGTTT
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
45 41 0.98
47 1 0.02
ACGTcount: A:0.22, C:0.11, G:0.11, T:0.55
Consensus pattern (43 bp):
ACTGTTCATATACTTTTATGTCGTTGTATGTATTTTATTATTC
Found at i:80266324 original size:21 final size:21
Alignment explanation
Indices: 80266298--80266369 Score: 56
Period size: 21 Copynumber: 3.3 Consensus size: 21
80266288 GTTCATATAC
80266298 TTTTATGTCGTTGTATGTACA
1 TTTTATGTCGTTGTATGTACA
* ** *
80266319 TTTTATTATTCACTGTTCATATAC-
1 TTTTA-T-GTCGTTG-T-ATGTACA
*
80266343 TTTTATGTCGTTGTATGTATA
1 TTTTATGTCGTTGTATGTACA
80266364 TTTTAT
1 TTTTAT
80266370 TATTAGTTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 10
0.66 0.16 0.18
Matches are distributed among these distances:
20 4 0.11
21 12 0.32
22 5 0.14
23 5 0.14
24 6 0.16
25 5 0.14
ACGTcount: A:0.21, C:0.10, G:0.12, T:0.57
Consensus pattern (21 bp):
TTTTATGTCGTTGTATGTACA
Found at i:80266364 original size:24 final size:24
Alignment explanation
Indices: 80266292--80266364 Score: 64
Period size: 24 Copynumber: 3.2 Consensus size: 24
80266282 CTTACTGTTC
80266292 ATATACTTTTATGTCGTTGTATGT
1 ATATACTTTTATGTCGTTGTATGT
* * ** *
80266316 ACAT-TTTATTAT-TCACTGT-T-C
1 ATATACTT-TTATGTCGTTGTATGT
80266337 ATATACTTTTATGTCGTTGTATGT
1 ATATACTTTTATGTCGTTGTATGT
80266361 ATAT
1 ATAT
80266365 TTTATTATTA
Statistics
Matches: 34, Mismatches: 10, Indels: 10
0.63 0.19 0.19
Matches are distributed among these distances:
21 7 0.21
22 8 0.24
23 8 0.24
24 11 0.32
ACGTcount: A:0.23, C:0.11, G:0.12, T:0.53
Consensus pattern (24 bp):
ATATACTTTTATGTCGTTGTATGT
Found at i:80266372 original size:24 final size:24
Alignment explanation
Indices: 80266300--80266372 Score: 64
Period size: 24 Copynumber: 3.2 Consensus size: 24
80266290 TCATATACTT
*
80266300 TTATGTCGTTGTATGTACATTTTA
1 TTATGTCGTTGTATGTATATTTTA
** * *
80266324 TTAT-TCACTGT-T-CATATACTT-
1 TTATGTCGTTGTATGTATAT-TTTA
80266345 TTATGTCGTTGTATGTATATTTTA
1 TTATGTCGTTGTATGTATATTTTA
80266369 TTAT
1 TTAT
80266373 TAGTTATGTT
Statistics
Matches: 35, Mismatches: 9, Indels: 10
0.65 0.17 0.19
Matches are distributed among these distances:
21 7 0.20
22 8 0.23
23 8 0.23
24 12 0.34
ACGTcount: A:0.22, C:0.10, G:0.12, T:0.56
Consensus pattern (24 bp):
TTATGTCGTTGTATGTATATTTTA
Found at i:80278979 original size:66 final size:67
Alignment explanation
Indices: 80278863--80279032 Score: 191
Period size: 66 Copynumber: 2.5 Consensus size: 67
80278853 TTTCCAAGGA
** *
80278863 AAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGTTGAGGTATTCTTA-AATTT
1 AAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCAAGACACGCCGAGGTATTCTTATAATGT
80278926 TTT
65 TTT
** * * *
80278929 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATG
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCCGAGGTATTCTTA--TAATG
80278994 TTTT
64 TTTT
** * *
80278998 AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
80279033 TTTAATTTTT
Statistics
Matches: 88, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
66 49 0.56
67 2 0.02
69 37 0.42
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (67 bp):
AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCCGAGGTATTCTTATAATGTT
TT
Found at i:80279177 original size:75 final size:75
Alignment explanation
Indices: 80279054--80279490 Score: 408
Period size: 75 Copynumber: 5.7 Consensus size: 75
80279044 TTTTTCAAAA
*
80279054 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTTGTG
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTTGTG
80279119 TGTTTTAATT
66 TGTTTTAATT
80279129 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTTGTG
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTTGTG
*
80279194 TGTTTTGATT
66 TGTTTTAATT
* * *
80279204 TCAAATCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTCAAAATCTGT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCAC--GCTGAGGTATTTTC--AA--T-T
* ** **
80279269 TTGGCAAATTCTGTGTTCAAAAA
59 TT------TTGTGTGTTTTAATT
* * * * *** * * * **
80279292 TCAACTCATATTGCGA-A-CTCATATTGCG-AGAGGTG-A-G-TTAAGCCTTTT-AA-TTTTTGT
1 TCAACTCATATTGCGAGAGGTGA-GTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTTGT
* **
80279349 -T-TTTCAAAA
65 GTGTTTTAATT
*
80279358 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTTGTG
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTTGTG
80279423 TGTTTTAATT
66 TGTTTTAATT
* *
80279433 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTCAA
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCAC--GCTGAGGTATTTTCAA
80279491 AATCTGTTTG
Statistics
Matches: 288, Mismatches: 48, Indels: 50
0.75 0.12 0.13
Matches are distributed among these distances:
66 21 0.07
67 6 0.02
68 8 0.03
69 1 0.00
70 1 0.00
71 7 0.02
72 2 0.01
73 7 0.02
74 4 0.01
75 154 0.53
77 28 0.10
78 2 0.01
79 2 0.01
81 7 0.02
82 4 0.01
85 1 0.00
86 4 0.01
87 5 0.02
88 24 0.08
ACGTcount: A:0.23, C:0.16, G:0.24, T:0.36
Consensus pattern (75 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTTGTG
TGTTTTAATT
Found at i:80279312 original size:13 final size:13
Alignment explanation
Indices: 80279294--80279320 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
80279284 TTCAAAAATC
80279294 AACTCATATTGCG
1 AACTCATATTGCG
80279307 AACTCATATTGCG
1 AACTCATATTGCG
80279320 A
1 A
80279321 GAGGTGAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (13 bp):
AACTCATATTGCG
Found at i:80284780 original size:62 final size:62
Alignment explanation
Indices: 80284683--80284807 Score: 223
Period size: 62 Copynumber: 2.0 Consensus size: 62
80284673 GGAGTGTGGC
* * *
80284683 AAGCTAAAATTGTATTTTATTTTTTCTTAGCAACGAGTGGCCACAGATGTGGTTGGTGACCT
1 AAGCTAAAATTGTATTTTATTTTTACCTAGCAACGAGAGGCCACAGATGTGGTTGGTGACCT
80284745 AAGCTAAAATTGTATTTTATTTTTACCTAGCAACGAGAGGCCACAGATGTGGTTGGTGACCT
1 AAGCTAAAATTGTATTTTATTTTTACCTAGCAACGAGAGGCCACAGATGTGGTTGGTGACCT
80284807 A
1 A
80284808 TTAATGCCAA
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 60 1.00
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.34
Consensus pattern (62 bp):
AAGCTAAAATTGTATTTTATTTTTACCTAGCAACGAGAGGCCACAGATGTGGTTGGTGACCT
Found at i:80285903 original size:22 final size:23
Alignment explanation
Indices: 80285860--80285913 Score: 67
Period size: 22 Copynumber: 2.3 Consensus size: 23
80285850 ACACGTTAGC
80285860 AAATAAATATTTCAATACAAA-T
1 AAATAAATATTTCAATACAAATT
*
80285882 AAATAAATATTT-ATATATAAATT
1 AAATAAATATTTCA-ATACAAATT
80285905 AAATTAAAT
1 AAA-TAAAT
80285914 TAAACAATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 1 0.04
22 18 0.64
23 4 0.14
24 5 0.18
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (23 bp):
AAATAAATATTTCAATACAAATT
Found at i:80289999 original size:13 final size:14
Alignment explanation
Indices: 80289973--80290006 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
80289963 GCCCACTCAC
80289973 TTAAAAACAATTTT
1 TTAAAAACAATTTT
*
80289987 TTAAAAAC-TTTTT
1 TTAAAAACAATTTT
80290000 TTAAAAA
1 TTAAAAA
80290007 TAAAATAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (14 bp):
TTAAAAACAATTTT
Found at i:80290590 original size:16 final size:17
Alignment explanation
Indices: 80290571--80290608 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 17
80290561 AGTCCAAATA
80290571 AAAAAAAAT-CAAA-CC
1 AAAAAAAATACAAACCC
*
80290586 TAAAAAAATACAAACCC
1 AAAAAAAATACAAACCC
80290603 AAAAAA
1 AAAAAA
80290609 TTTAAAATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
15 8 0.42
16 4 0.21
17 7 0.37
ACGTcount: A:0.74, C:0.18, G:0.00, T:0.08
Consensus pattern (17 bp):
AAAAAAAATACAAACCC
Found at i:80290594 original size:15 final size:16
Alignment explanation
Indices: 80290572--80290608 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
80290562 GTCCAAATAA
*
80290572 AAAAAAAT-CAAACCT
1 AAAAAAATACAAACCC
80290587 AAAAAAATACAAACCC
1 AAAAAAATACAAACCC
80290603 AAAAAA
1 AAAAAA
80290609 TTTAAAATTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.73, C:0.19, G:0.00, T:0.08
Consensus pattern (16 bp):
AAAAAAATACAAACCC
Found at i:80294032 original size:98 final size:98
Alignment explanation
Indices: 80293922--80294125 Score: 338
Period size: 98 Copynumber: 2.1 Consensus size: 98
80293912 TTATTATTGA
*
80293922 ATAT-ATATTAGTTTATGACATTTATATTTTTATACTAGTATTGGATATACATTAAAAATTGAGA
1 ATATAATATTAGTTTATGACATTTATATTTTTATACTAGTATTGGATATACATTAAAAAATGAGA
* * *
80293986 TTTATTAGAGTTGGATATCTATTTGCGTTAAAT
66 TTTATTAGACTTGAATATCTACTTGCGTTAAAT
* **
80294019 ATATAATATTAGTTTATGACATTTATATTTTTATAGTAGTATTGGATATACATTAAAAAATGATT
1 ATATAATATTAGTTTATGACATTTATATTTTTATACTAGTATTGGATATACATTAAAAAATGAGA
80294084 TTTATTAGACTTGAATATCTACTTGCGTTAAAT
66 TTTATTAGACTTGAATATCTACTTGCGTTAAAT
80294117 ATATAATAT
1 ATATAATAT
80294126 AGTGTTGAAT
Statistics
Matches: 99, Mismatches: 7, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
97 4 0.04
98 95 0.96
ACGTcount: A:0.37, C:0.05, G:0.12, T:0.46
Consensus pattern (98 bp):
ATATAATATTAGTTTATGACATTTATATTTTTATACTAGTATTGGATATACATTAAAAAATGAGA
TTTATTAGACTTGAATATCTACTTGCGTTAAAT
Found at i:80294615 original size:15 final size:15
Alignment explanation
Indices: 80294581--80294616 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
80294571 ATCTTGTTGA
80294581 TTCTTGAAGGCTATG
1 TTCTTGAAGGCTATG
* *
80294596 ATCTTGAAGGCTTTG
1 TTCTTGAAGGCTATG
80294611 TTCTTG
1 TTCTTG
80294617 GTACAACTCC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.17, C:0.14, G:0.25, T:0.44
Consensus pattern (15 bp):
TTCTTGAAGGCTATG
Found at i:80301424 original size:17 final size:17
Alignment explanation
Indices: 80301398--80301431 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
80301388 TCAAAATTAA
* *
80301398 TTTTCTCAAAAATCACT
1 TTTTCCCAAAAACCACT
80301415 TTTTCCCAAAAACCACT
1 TTTTCCCAAAAACCACT
80301432 GAGATTTTCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.29, G:0.00, T:0.35
Consensus pattern (17 bp):
TTTTCCCAAAAACCACT
Found at i:80307397 original size:18 final size:18
Alignment explanation
Indices: 80307349--80307410 Score: 67
Period size: 18 Copynumber: 3.6 Consensus size: 18
80307339 ATGGATATAA
80307349 AAAATATTTAT-AAATAT
1 AAAATATTTATCAAATAT
* *
80307366 CAAATAAATT-TCAAATAT
1 AAAAT-ATTTATCAAATAT
*
80307384 AAAATATTTATCAAAAAT
1 AAAATATTTATCAAATAT
80307402 AAAAT-TTTA
1 AAAATATTTA
80307411 GTTGAATAAG
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
17 12 0.32
18 25 0.68
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (18 bp):
AAAATATTTATCAAATAT
Found at i:80309283 original size:2 final size:2
Alignment explanation
Indices: 80309276--80309313 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
80309266 CCCTTTCGAT
80309276 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
80309314 GTTAACCCCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:80313391 original size:66 final size:66
Alignment explanation
Indices: 80313263--80313395 Score: 160
Period size: 66 Copynumber: 2.0 Consensus size: 66
80313253 ATTTTGAAGC
* * * * **
80313263 TGTAGCTGGAGTTCGTCATATTTTCTTATTGCCTCTGCTTCCCTCGTTGTTGCCTTTACTTTAAG
1 TGTAGCTGGAGTTCATCATATTTTCTTATTGCCGCTGCTTCCCTCGATGCTGCCTCCACTTTAAG
80313328 T
66 T
* * * *
80313329 TGTAGCTGGAGTTCATCATATTTTCTT-TTAGCCGCTGTTTCTCTTGATGCTGCCTCCGCTTTAA
1 TGTAGCTGGAGTTCATCATATTTTCTTATT-GCCGCTGCTTCCCTCGATGCTGCCTCCACTTTAA
80313393 GT
65 GT
80313395 T
1 T
80313396 AAGCAATTTG
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
65 2 0.04
66 54 0.96
ACGTcount: A:0.13, C:0.23, G:0.19, T:0.46
Consensus pattern (66 bp):
TGTAGCTGGAGTTCATCATATTTTCTTATTGCCGCTGCTTCCCTCGATGCTGCCTCCACTTTAAG
T
Found at i:80317199 original size:6 final size:6
Alignment explanation
Indices: 80317173--80317206 Score: 52
Period size: 6 Copynumber: 5.7 Consensus size: 6
80317163 TGAAAATAGA
80317173 TTTTA- TTTTAT TTTCTAT TTTTAT TTTTAT TTTT
1 TTTTAT TTTTAT TTT-TAT TTTTAT TTTTAT TTTT
80317207 CCCAAAATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
5 5 0.19
6 16 0.59
7 6 0.22
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTAT
Found at i:80317886 original size:17 final size:18
Alignment explanation
Indices: 80317864--80317900 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
80317854 GGCTAAGTAG
*
80317864 GGCGTGT-GGGCCACACA
1 GGCGTGTAGGCCCACACA
80317881 GGCGTGTAGGCCCACACA
1 GGCGTGTAGGCCCACACA
80317899 GG
1 GG
80317901 TATGCCATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.19, C:0.30, G:0.41, T:0.11
Consensus pattern (18 bp):
GGCGTGTAGGCCCACACA
Found at i:80319471 original size:16 final size:16
Alignment explanation
Indices: 80319450--80319484 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
80319440 TTTTAGTCAC
80319450 TTATGTTATCATTTTG
1 TTATGTTATCATTTTG
80319466 TTATGTTATCATTTTG
1 TTATGTTATCATTTTG
80319482 TTA
1 TTA
80319485 CGAAGTGGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.20, C:0.06, G:0.11, T:0.63
Consensus pattern (16 bp):
TTATGTTATCATTTTG
Found at i:80319623 original size:18 final size:17
Alignment explanation
Indices: 80319600--80319634 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
80319590 GAATAGATTT
80319600 TTAATTAAATAAATTTAA
1 TTAATTAAA-AAATTTAA
80319618 TTAATTAAAAAATTTAA
1 TTAATTAAAAAATTTAA
80319635 ACCCTAAACC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
TTAATTAAAAAATTTAA
Found at i:80320025 original size:17 final size:18
Alignment explanation
Indices: 80320003--80320036 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
80319993 TTCTTCTACC
*
80320003 AAAAAAT-AGTATAGAAA
1 AAAAAATGAGGATAGAAA
80320020 AAAAAATGAGGATAGAA
1 AAAAAATGAGGATAGAA
80320037 TTCTTTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.68, C:0.00, G:0.18, T:0.15
Consensus pattern (18 bp):
AAAAAATGAGGATAGAAA
Found at i:80338290 original size:56 final size:57
Alignment explanation
Indices: 80338222--80338331 Score: 186
Period size: 56 Copynumber: 1.9 Consensus size: 57
80338212 CACGTTTAAT
* *
80338222 ACGTTGTAATACGTTGGCATCGATATGTGACTTCGATATATGTGTGCGAGTAAGCCC
1 ACGTTGTAATACGTTGGCATCAATATGTGACTCCGATATATGTGTGCGAGTAAGCCC
*
80338279 ACGTT-TAATACGTTGGCATCAATATGTGACTCCGATATATGTGTGTGAGTAAG
1 ACGTTGTAATACGTTGGCATCAATATGTGACTCCGATATATGTGTGCGAGTAAG
80338332 ACCCTGTCTA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
56 45 0.90
57 5 0.10
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.33
Consensus pattern (57 bp):
ACGTTGTAATACGTTGGCATCAATATGTGACTCCGATATATGTGTGCGAGTAAGCCC
Found at i:80338352 original size:56 final size:56
Alignment explanation
Indices: 80338232--80338363 Score: 160
Period size: 56 Copynumber: 2.4 Consensus size: 56
80338222 ACGTTGTAAT
* * * *
80338232 ACGTTGGCATCGATATGTGACTTCGATATATGTGTGCGAGTAAGCCCACGTTTAAT
1 ACGTTGGCATCAATATGTGACTCCGATATATGTGTGCGAGTAAGCCCACGTCTAAG
* * *
80338288 ACGTTGGCATCAATATGTGACTCCGATATATGTGTGTGAGTAAGACCC-TGTCTAGG
1 ACGTTGGCATCAATATGTGACTCCGATATATGTGTGCGAGTAAG-CCCACGTCTAAG
*
80338344 ACAG-TGGCATCAAAATGTGA
1 AC-GTTGGCATCAATATGTGA
80338364 TTACATGTAA
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
56 62 0.94
57 4 0.06
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (56 bp):
ACGTTGGCATCAATATGTGACTCCGATATATGTGTGCGAGTAAGCCCACGTCTAAG
Found at i:80343744 original size:21 final size:22
Alignment explanation
Indices: 80343704--80343744 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
80343694 TTCCAAATAA
* *
80343704 AACATTATATCATTTCTAATTC
1 AACATTATATCAATTATAATTC
80343726 AACATT-TATCAATTATAAT
1 AACATTATATCAATTATAAT
80343745 CGGGCATGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (22 bp):
AACATTATATCAATTATAATTC
Found at i:80346958 original size:40 final size:40
Alignment explanation
Indices: 80346913--80346991 Score: 131
Period size: 40 Copynumber: 2.0 Consensus size: 40
80346903 ACACACTATG
*
80346913 TGGGGATAAAATCAACCCACCCAGCCCTACACACCAAGTA
1 TGGGGATAAAATCAACCCACCCAACCCTACACACCAAGTA
* *
80346953 TGGGGATACAATCAACCCATCCAACCCTACACACCAAGT
1 TGGGGATAAAATCAACCCACCCAACCCTACACACCAAGT
80346992 GGTACCGTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.37, C:0.35, G:0.14, T:0.14
Consensus pattern (40 bp):
TGGGGATAAAATCAACCCACCCAACCCTACACACCAAGTA
Found at i:80356680 original size:20 final size:20
Alignment explanation
Indices: 80356651--80356690 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
80356641 TTACCAAGTG
80356651 GTTCCATTTTATCTTCCGAT
1 GTTCCATTTTATCTTCCGAT
* *
80356671 GTTCCTTTTTATTTTCCGAT
1 GTTCCATTTTATCTTCCGAT
80356691 CTCAATTTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.12, C:0.23, G:0.10, T:0.55
Consensus pattern (20 bp):
GTTCCATTTTATCTTCCGAT
Found at i:80359967 original size:27 final size:27
Alignment explanation
Indices: 80359928--80359994 Score: 75
Period size: 26 Copynumber: 2.5 Consensus size: 27
80359918 AACACATTAG
*
80359928 GAAAGGAAA-CCTTTTATGGCATAATAT
1 GAAA-GAAAGCCTTTTACGGCATAATAT
* **
80359955 GAAAGAAAGCC-TTTGCGGTGTAATAT
1 GAAAGAAAGCCTTTTACGGCATAATAT
80359981 GAAAGAAAGCCTTT
1 GAAAGAAAGCCTTT
80359995 GTGGCGCACT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
26 26 0.76
27 8 0.24
ACGTcount: A:0.39, C:0.12, G:0.22, T:0.27
Consensus pattern (27 bp):
GAAAGAAAGCCTTTTACGGCATAATAT
Found at i:80370759 original size:21 final size:19
Alignment explanation
Indices: 80370730--80370772 Score: 50
Period size: 21 Copynumber: 2.2 Consensus size: 19
80370720 TATTTATTTT
80370730 AATTAAAAATATTTGTTATAA
1 AATTAAAAAT-TTT-TTATAA
* *
80370751 AATTTAAAATTTTTTATTA
1 AATTAAAAATTTTTTATAA
80370770 AAT
1 AAT
80370773 CAAATGATTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 8 0.40
20 3 0.15
21 9 0.45
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (19 bp):
AATTAAAAATTTTTTATAA
Found at i:80374182 original size:99 final size:99
Alignment explanation
Indices: 80373996--80374216 Score: 268
Period size: 99 Copynumber: 2.3 Consensus size: 99
80373986 AAGAGCTTTC
* * *
80373996 CATTGAAGAAGATGGATCTGTTCCCAAATCGTCTTCAAATTCTGGCTCAGCTGACTGCTGTACGA
1 CATTGAAGAAGATGGATCTGTTCCCAAATCGTCGTCAAACTCTGGCTCAGCTGACTGCAGTACGA
* *
80374061 TTGACATGGTTCCAACCGAAATAAAGGAGTTTTT
66 ATGACATGGTTCCAACCAAAATAAAGGAGTTTTT
* * *
80374095 CATTGAAGAAGATGGATCTGTTCCGAAGTCGTCGTCAACCTCTGGCTCAGCTGACTGCAGTACGA
1 CATTGAAGAAGATGGATCTGTTCCCAAATCGTCGTCAAACTCTGGCTCAGCTGACTGCAGTACGA
* * * * *
80374160 ATGATATGTTTGCACCCAAAAT--A-GAGGTTTT
66 ATGACATGGTTCCAACCAAAATAAAGGAGTTTTT
****
80374191 CCCCAAAGAAGATGGATCTGTTCCCA
1 CATTGAAGAAGATGGATCTGTTCCCA
80374217 GGTCAGCTGA
Statistics
Matches: 104, Mismatches: 18, Indels: 3
0.83 0.14 0.02
Matches are distributed among these distances:
96 28 0.27
97 1 0.01
99 75 0.72
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (99 bp):
CATTGAAGAAGATGGATCTGTTCCCAAATCGTCGTCAAACTCTGGCTCAGCTGACTGCAGTACGA
ATGACATGGTTCCAACCAAAATAAAGGAGTTTTT
Found at i:80379224 original size:22 final size:22
Alignment explanation
Indices: 80379196--80379238 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
80379186 AGGAATTTTT
80379196 GTAGGGAAATGGTATATGTATG
1 GTAGGGAAATGGTATATGTATG
80379218 GTAGGGAAATGGTATATGTAT
1 GTAGGGAAATGGTATATGTAT
80379239 AAGAGCATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.35, T:0.33
Consensus pattern (22 bp):
GTAGGGAAATGGTATATGTATG
Found at i:80393811 original size:43 final size:43
Alignment explanation
Indices: 80393750--80393838 Score: 169
Period size: 43 Copynumber: 2.1 Consensus size: 43
80393740 CATTTAAGGG
80393750 TTTCTGATCATCGAACCTCGGCATTAATCATAACTTAAAGTGA
1 TTTCTGATCATCGAACCTCGGCATTAATCATAACTTAAAGTGA
*
80393793 TTTCTGATCATCGAACCTCGGCATTCATCATAACTTAAAGTGA
1 TTTCTGATCATCGAACCTCGGCATTAATCATAACTTAAAGTGA
80393836 TTT
1 TTT
80393839 AGTGCCAAAA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.35
Consensus pattern (43 bp):
TTTCTGATCATCGAACCTCGGCATTAATCATAACTTAAAGTGA
Found at i:80395304 original size:5 final size:5
Alignment explanation
Indices: 80395294--80395343 Score: 64
Period size: 5 Copynumber: 10.0 Consensus size: 5
80395284 TAAAAATAAA
* * * *
80395294 TATAT TATAT TATAT TATAT TATAT TATAG TATAG TATAG TATAA TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
80395344 ATTTAAAGTA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 42 1.00
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (5 bp):
TATAT
Found at i:80395465 original size:17 final size:17
Alignment explanation
Indices: 80395443--80395476 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
80395433 TATATTTTAG
80395443 ATTCATTTTAGTTGATT
1 ATTCATTTTAGTTGATT
80395460 ATTCATTTTAGTTGATT
1 ATTCATTTTAGTTGATT
80395477 TGACTTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.06, G:0.12, T:0.59
Consensus pattern (17 bp):
ATTCATTTTAGTTGATT
Found at i:80401220 original size:24 final size:24
Alignment explanation
Indices: 80401192--80401245 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
80401182 TGTGCCAACA
80401192 GTATTCATAGACTTAATGAACAGG
1 GTATTCATAGACTTAATGAACAGG
*
80401216 GTATTCATGGACTTAATGAACAGG
1 GTATTCATAGACTTAATGAACAGG
80401240 GTATTC
1 GTATTC
80401246 TAACCTTACT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.31
Consensus pattern (24 bp):
GTATTCATAGACTTAATGAACAGG
Found at i:80407822 original size:21 final size:21
Alignment explanation
Indices: 80407780--80407823 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
80407770 CGATTTTCAT
* * *
80407780 ACAGGCATGTGCCTTGGACAC
1 ACAGCCATGTCCCTTAGACAC
*
80407801 ACAGCCATGTCCCTTAGCCAC
1 ACAGCCATGTCCCTTAGACAC
80407822 AC
1 AC
80407824 GGGCGTGTGA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.25, C:0.36, G:0.20, T:0.18
Consensus pattern (21 bp):
ACAGCCATGTCCCTTAGACAC
Found at i:80417223 original size:22 final size:21
Alignment explanation
Indices: 80417197--80417242 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
80417187 ATTAAATTTT
80417197 TATAAATATTTGGCAATATATA
1 TATAAATATTTGGCAATAT-TA
* * *
80417219 TATAAATGTTTTGCTATATTA
1 TATAAATATTTGGCAATATTA
80417240 TAT
1 TAT
80417243 TGTTAGTAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 5 0.24
22 16 0.76
ACGTcount: A:0.39, C:0.04, G:0.09, T:0.48
Consensus pattern (21 bp):
TATAAATATTTGGCAATATTA
Found at i:80422560 original size:36 final size:35
Alignment explanation
Indices: 80422513--80422581 Score: 120
Period size: 36 Copynumber: 1.9 Consensus size: 35
80422503 AATTCAGGCC
*
80422513 TTCCTGCATCCAAACATCAGTTTATCTCAAACTNCA
1 TTCCTGCATCCAAACATCAGTTTATCCCAAACT-CA
80422549 TTCCTGCATCCAAACATCAGTTTATCCCAAACT
1 TTCCTGCATCCAAACATCAGTTTATCCCAAACT
80422582 TCTCTCATTG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.30, C:0.32, G:0.06, T:0.30
Consensus pattern (35 bp):
TTCCTGCATCCAAACATCAGTTTATCCCAAACTCA
Found at i:80424409 original size:60 final size:60
Alignment explanation
Indices: 80424333--80424480 Score: 165
Period size: 60 Copynumber: 2.5 Consensus size: 60
80424323 ACAAGTTTGT
* * * * *
80424333 TTTAGGACTGCTTATTATGTTTGGCTGATGTGGCTATCTGCATGACTA-TTTCAAGGAAGA
1 TTTACGACTGCTTATTAAGTTTGGCTGATGTGGATATATGCATGA-GAGTTTCAAGGAAGA
* * * *
80424393 TTTACGAGTGCTTATTAAGCTTGGCTGATGTGGATATATGCTTGAGAGTTTCAAGTAAGA
1 TTTACGACTGCTTATTAAGTTTGGCTGATGTGGATATATGCATGAGAGTTTCAAGGAAGA
* * *
80424453 TTTAGGACTACTTATT-GGTTTGGCTGAT
1 TTTACGACTGCTTATTAAGTTTGGCTGAT
80424481 CTTGGTATCT
Statistics
Matches: 73, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
59 11 0.15
60 62 0.85
ACGTcount: A:0.24, C:0.11, G:0.26, T:0.39
Consensus pattern (60 bp):
TTTACGACTGCTTATTAAGTTTGGCTGATGTGGATATATGCATGAGAGTTTCAAGGAAGA
Found at i:80427549 original size:33 final size:33
Alignment explanation
Indices: 80427498--80427579 Score: 96
Period size: 33 Copynumber: 2.5 Consensus size: 33
80427488 AAGTTTTTCA
* *
80427498 ATTTTCAAAAA-AATAAAAATAAAAAATAAAA-CT
1 ATTTTCAAAAACTA-AAAAAT-AAAAATAAAATAT
* *
80427531 ATTTTCTAAAATTAAAAAATAAAAATAAAATAT
1 ATTTTCAAAAACTAAAAAATAAAAATAAAATAT
80427564 ATTTTCAAAAACTAAA
1 ATTTTCAAAAACTAAA
80427580 TGGAACCTAA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
32 10 0.24
33 31 0.74
34 1 0.02
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (33 bp):
ATTTTCAAAAACTAAAAAATAAAAATAAAATAT
Found at i:80442545 original size:22 final size:23
Alignment explanation
Indices: 80442509--80442557 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 23
80442499 TAAAATACAA
*
80442509 TAAATTAATAATAAAAGTATATC
1 TAAATTAATAATAAAAGTAAATC
*
80442532 TAAATTTA-AATAAAAGTAAATC
1 TAAATTAATAATAAAAGTAAATC
80442554 TAAA
1 TAAA
80442558 CTAAATTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 17 0.71
23 7 0.29
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.33
Consensus pattern (23 bp):
TAAATTAATAATAAAAGTAAATC
Found at i:80446665 original size:700 final size:701
Alignment explanation
Indices: 80445296--80446699 Score: 2720
Period size: 700 Copynumber: 2.0 Consensus size: 701
80445286 CCTGGAAGAA
80445296 AGTCCATACAAAGACGCAGTAGAGTCGACAAACAGCAAACCTTTGAGCTTGTTCCTACAAAACGA
1 AGTCCATACAAAGACGCAGTAGAGTCGACAAACAGCAAACCTTTGAGCTTGTTCCTACAAAACGA
80445361 CCTTCCAGCAATGGAGAGGAACTATGAATCAACGAGCTTTAGACTACAGAACCTTGAACAAGAGC
66 CCTTCCAGCAATGGAGAGGAACTATGAATCAACGAGCTTTAGACTACAGAACCTTGAACAAGAGC
80445426 TAATGTCATTGAAGAAGAGCCTTCAATGGCATGAAATGTCGAAGAAAACAAATTCCAATCCCAAC
131 TAATGTCATTGAAGAAGAGCCTTCAATGGCATGAAATGTCGAAGAAAACAAATTCCAATCCCAAC
*
80445491 AAATCGTAGTGTATCAAACCGTATGCATTAGAAAGAAGATCGGGGAGCAAGAGAAAGAATACTCT
196 AAATCGCAGTGTATCAAACCGTATGCATTAGAAAGAAGATCGGGGAGCAAGAGAAAGAATACTCT
80445556 GGGAGAAGTAACGAGTTGCATAGGCTCTGTAAATTTTTCTTCGCAAAGGAAATATGCTAGTAGGT
261 GGGAGAAGTAACGAGTTGCATAGGCTCTGTAAATTTTTCTTCGCAAAGGAAATATGCTAGTAGGT
80445621 TAATTAAAATCTTTCGTAGATTGTCGTTGTTTGGGATTAGAAAATCAAAGAGAAAGACAGGAGCT
326 TAATTAAAATCTTTCGTAGATTGTCGTTGTTTGGGATTAGAAAATCAAAGAGAAAGACAGGAGCT
*
80445686 AGTGGCCTGTGGGCTAAGTCAATCTAGCAGATTAAGGGTGGGTTTGGGGCGGCGGGGCGGTGCGG
391 AGTGGCCTGTGGGCTAAGTCAATCTAGCAGATTAAGGGTGGGTTTGGGGCGGCGGGACGGTGCGG
*
80445751 TGCCTTGCGTTTAACTTATTTTTTGTCTTGTGCTACAGTATCGCTACAGTATTTAATCTCACTGT
456 TGCCGTGCGTTTAACTTATTTTTTGTCTTGTGCTACAGTATCGCTACAGTATTTAATCTCACTGT
80445816 CACCGCTGTTTTTACACTAACCGCAGTTAAACGTACTGCCCATCCAAACTCACCCTAAAATATAT
521 CACCGCTGTTTTTACACTAACCGCAGTTAAACGTACTGCCCATCCAAACTCACCCTAAAATATAT
80445881 GAAAAACAAAAAATCCACAAATACAATGAAAAACATTTTAAGGAAGGCCAGTAGATTGTAGTGTT
586 GAAAAACAAAAAATCCACAAATACAATGAAAAACATTTTAAGGAAGGCCAGTAGATTGTAGTGTT
80445946 AATATGATGGTAAGCACAAAATTGACCCACAGTTGATTTCTCATTGGGCAT
651 AATATGATGGTAAGCACAAAATTGACCCACAGTTGATTTCTCATTGGGCAT
*
80445997 AGTCCATACAAGGACGCAGTAGAGTCGAC-AACAGCAAACCTTTGAGCTTGTTCCTACAAAACGA
1 AGTCCATACAAAGACGCAGTAGAGTCGACAAACAGCAAACCTTTGAGCTTGTTCCTACAAAACGA
* *
80446061 CCTTCCGGCAATGGAGAGGAACTATGAATCAACGAGCTTTAGACTACAGAACCTTGAACAAGAGT
66 CCTTCCAGCAATGGAGAGGAACTATGAATCAACGAGCTTTAGACTACAGAACCTTGAACAAGAGC
80446126 TAATGTCATTGAAGAAGAGCCTTCAATGGCATGAAATGTCGAAGAAAACAAATTCCAATCCCAAC
131 TAATGTCATTGAAGAAGAGCCTTCAATGGCATGAAATGTCGAAGAAAACAAATTCCAATCCCAAC
80446191 AAATCGCAGTGTATCAAACCGTATGCATTAGAAAGAAGATCGGGGAGCAAGAGAAAGAATACTCT
196 AAATCGCAGTGTATCAAACCGTATGCATTAGAAAGAAGATCGGGGAGCAAGAGAAAGAATACTCT
80446256 GGGAGAAGTAACGAGTTGCATAGGCTCTGTAAATTTTTCTTCGCAAAGGAAATATGCTAGTAGGT
261 GGGAGAAGTAACGAGTTGCATAGGCTCTGTAAATTTTTCTTCGCAAAGGAAATATGCTAGTAGGT
*
80446321 TAATTAAGATCTTTCGTAGATTGTCGTTGTTTGGGATTAGAAAATCAAAGAGAAAGACAGGAGCT
326 TAATTAAAATCTTTCGTAGATTGTCGTTGTTTGGGATTAGAAAATCAAAGAGAAAGACAGGAGCT
80446386 AGTGGCCTGTGGGCTAAGTCAATCTAGCAGATTAAGGGTGGGTTTGGGGCGGCGGGACGGTGCGG
391 AGTGGCCTGTGGGCTAAGTCAATCTAGCAGATTAAGGGTGGGTTTGGGGCGGCGGGACGGTGCGG
*
80446451 TGCGGTGCGTTTAACTTATTTTTTGTCTTGTGCTACAGTATCGCTACAGTATTTAATCTCACTGT
456 TGCCGTGCGTTTAACTTATTTTTTGTCTTGTGCTACAGTATCGCTACAGTATTTAATCTCACTGT
80446516 CACCGCTGTTTTTACACTAACCGCAGTTAAACGTACTGCCCATCCAAACTCACCCTAAAATATAT
521 CACCGCTGTTTTTACACTAACCGCAGTTAAACGTACTGCCCATCCAAACTCACCCTAAAATATAT
80446581 GAAAAACAAAAAATCCACAAATACAATGAAAAACATTTTAAGGAAGGCCAGTAGATTGTAGTGTT
586 GAAAAACAAAAAATCCACAAATACAATGAAAAACATTTTAAGGAAGGCCAGTAGATTGTAGTGTT
*
80446646 AATATGATGGTAAGCACAAAATTGACCCACGGTTGATTTCTCATTGGGCAT
651 AATATGATGGTAAGCACAAAATTGACCCACAGTTGATTTCTCATTGGGCAT
80446697 AGT
1 AGT
80446700 TTGTATGTAA
Statistics
Matches: 694, Mismatches: 9, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
700 666 0.96
701 28 0.04
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (701 bp):
AGTCCATACAAAGACGCAGTAGAGTCGACAAACAGCAAACCTTTGAGCTTGTTCCTACAAAACGA
CCTTCCAGCAATGGAGAGGAACTATGAATCAACGAGCTTTAGACTACAGAACCTTGAACAAGAGC
TAATGTCATTGAAGAAGAGCCTTCAATGGCATGAAATGTCGAAGAAAACAAATTCCAATCCCAAC
AAATCGCAGTGTATCAAACCGTATGCATTAGAAAGAAGATCGGGGAGCAAGAGAAAGAATACTCT
GGGAGAAGTAACGAGTTGCATAGGCTCTGTAAATTTTTCTTCGCAAAGGAAATATGCTAGTAGGT
TAATTAAAATCTTTCGTAGATTGTCGTTGTTTGGGATTAGAAAATCAAAGAGAAAGACAGGAGCT
AGTGGCCTGTGGGCTAAGTCAATCTAGCAGATTAAGGGTGGGTTTGGGGCGGCGGGACGGTGCGG
TGCCGTGCGTTTAACTTATTTTTTGTCTTGTGCTACAGTATCGCTACAGTATTTAATCTCACTGT
CACCGCTGTTTTTACACTAACCGCAGTTAAACGTACTGCCCATCCAAACTCACCCTAAAATATAT
GAAAAACAAAAAATCCACAAATACAATGAAAAACATTTTAAGGAAGGCCAGTAGATTGTAGTGTT
AATATGATGGTAAGCACAAAATTGACCCACAGTTGATTTCTCATTGGGCAT
Found at i:80447064 original size:16 final size:16
Alignment explanation
Indices: 80447039--80447117 Score: 62
Period size: 16 Copynumber: 5.3 Consensus size: 16
80447029 TTATTTATAT
*
80447039 TTATTCATATAATAAA
1 TTATTAATATAATAAA
*
80447055 TTATTAATATGAT---
1 TTATTAATATAATAAA
* *
80447068 TTATTATTTTAATAAA
1 TTATTAATATAATAAA
80447084 TTATTAATATAAT---
1 TTATTAATATAATAAA
* *
80447097 TTATTATTTTAATAAA
1 TTATTAATATAATAAA
80447113 TTATT
1 TTATT
80447118 TTATATTCTA
Statistics
Matches: 48, Mismatches: 9, Indels: 12
0.70 0.13 0.17
Matches are distributed among these distances:
13 21 0.44
16 27 0.56
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.54
Consensus pattern (16 bp):
TTATTAATATAATAAA
Found at i:80447086 original size:13 final size:13
Alignment explanation
Indices: 80447070--80447120 Score: 57
Period size: 13 Copynumber: 3.7 Consensus size: 13
80447060 AATATGATTT
80447070 ATTATTTTAATAA
1 ATTATTTTAATAA
**
80447083 ATTATTAATATAATTT
1 ATTATT--T-TAATAA
80447099 ATTATTTTAATAA
1 ATTATTTTAATAA
80447112 ATTATTTTA
1 ATTATTTTA
80447121 TATTCTAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
13 19 0.61
14 1 0.03
15 1 0.03
16 10 0.32
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
ATTATTTTAATAA
Found at i:80447135 original size:34 final size:29
Alignment explanation
Indices: 80447048--80447117 Score: 131
Period size: 29 Copynumber: 2.4 Consensus size: 29
80447038 TTTATTCATA
*
80447048 TAATAAATTATTAATATGATTTATTATTT
1 TAATAAATTATTAATATAATTTATTATTT
80447077 TAATAAATTATTAATATAATTTATTATTT
1 TAATAAATTATTAATATAATTTATTATTT
80447106 TAATAAATTATT
1 TAATAAATTATT
80447118 TTATATTCTA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.54
Consensus pattern (29 bp):
TAATAAATTATTAATATAATTTATTATTT
Found at i:80447149 original size:13 final size:14
Alignment explanation
Indices: 80447133--80447174 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
80447123 TTCTAAATTT
80447133 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
80447146 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
80447161 ATTTTAAATAATAT
1 ATTTT-AATAATAT
80447175 TCTTTACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:80447159 original size:16 final size:16
Alignment explanation
Indices: 80447137--80447173 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
80447127 AAATTTATTT
80447137 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
80447154 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
80447169 TAATA
1 TAATA
80447174 TTCTTTACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:80447226 original size:15 final size:15
Alignment explanation
Indices: 80447192--80447257 Score: 55
Period size: 15 Copynumber: 4.3 Consensus size: 15
80447182 ATATTATTAA
80447192 AAATA-TTTAAT-AT
1 AAATATTTTAATAAT
*
80447205 TAATATTTTAATAAT
1 AAATATTTTAATAAT
*
80447220 AAATATTTATTACAATTAT
1 AAATA-TT-TT--AATAAT
*
80447239 AAATATATTAATAAT
1 AAATATTTTAATAAT
80447254 AAAT
1 AAAT
80447258 GCTTTGTAGT
Statistics
Matches: 42, Mismatches: 5, Indels: 10
0.74 0.09 0.18
Matches are distributed among these distances:
13 4 0.10
14 6 0.14
15 15 0.36
16 2 0.05
17 4 0.10
18 1 0.02
19 10 0.24
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
AAATATTTTAATAAT
Found at i:80448601 original size:21 final size:21
Alignment explanation
Indices: 80448556--80448606 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
80448546 AACGATAGTT
* * **
80448556 GTGAGATTAGTTACTGTAATG
1 GTGAGATTAGTTAATATAACA
80448577 GTGAGATTAGTTAATATAACA
1 GTGAGATTAGTTAATATAACA
80448598 GTGAGATTA
1 GTGAGATTA
80448607 AAATTAATAC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.35, C:0.04, G:0.25, T:0.35
Consensus pattern (21 bp):
GTGAGATTAGTTAATATAACA
Found at i:80451733 original size:18 final size:18
Alignment explanation
Indices: 80451684--80451734 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
80451674 ATATATTTTC
* *
80451684 ATAAA-ATAATATAGTAT
1 ATAAATATAAAATATTAT
*
80451701 A-AAATATTAACATATTAT
1 ATAAATA-TAAAATATTAT
80451719 ATAAATATAAAATATT
1 ATAAATATAAAATATT
80451735 TAAATACGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
16 3 0.11
17 2 0.07
18 18 0.64
19 5 0.18
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (18 bp):
ATAAATATAAAATATTAT
Found at i:80453623 original size:23 final size:23
Alignment explanation
Indices: 80453572--80453626 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
80453562 AGGTTTTTTA
* *
80453572 TTTTTTAAGGTTAGGGATTTTAG
1 TTTTTTAGGGTTAGGGATTTAAG
*
80453595 TGTTTTAGGGTTAGGG-TTTAAGG
1 TTTTTTAGGGTTAGGGATTTAA-G
80453618 TTTTTTAGG
1 TTTTTTAGG
80453627 TTTAAGGTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 4 0.15
23 23 0.85
ACGTcount: A:0.18, C:0.00, G:0.31, T:0.51
Consensus pattern (23 bp):
TTTTTTAGGGTTAGGGATTTAAG
Found at i:80453630 original size:16 final size:16
Alignment explanation
Indices: 80453609--80453640 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
80453599 TTAGGGTTAG
*
80453609 GGTTTAAGGTTTTTTA
1 GGTTTAAGGTATTTTA
80453625 GGTTTAAGGTATTTTA
1 GGTTTAAGGTATTTTA
80453641 AAAGTGTTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.22, C:0.00, G:0.25, T:0.53
Consensus pattern (16 bp):
GGTTTAAGGTATTTTA
Found at i:80460611 original size:15 final size:15
Alignment explanation
Indices: 80460556--80460612 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
80460546 AGTAAAAAAT
*
80460556 AATTTCAAATTAAAAA
1 AATTT-AAATTAACAA
* *
80460572 AAATTAAATTTAACAT
1 AATTTAAA-TTAACAA
* *
80460588 TATTAAAATTAACAA
1 AATTTAAATTAACAA
80460603 AATTTAAATT
1 AATTTAAATT
80460613 TTTATCTTAT
Statistics
Matches: 31, Mismatches: 9, Indels: 3
0.72 0.21 0.07
Matches are distributed among these distances:
15 17 0.55
16 14 0.45
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (15 bp):
AATTTAAATTAACAA
Found at i:80466471 original size:20 final size:20
Alignment explanation
Indices: 80466446--80466485 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
80466436 ATGTTTTTAC
80466446 ATATATTAATAAATTTATAT
1 ATATATTAATAAATTTATAT
80466466 ATATATTAATAAATTTATAT
1 ATATATTAATAAATTTATAT
80466486 TTTAAATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
ATATATTAATAAATTTATAT
Found at i:80466490 original size:16 final size:18
Alignment explanation
Indices: 80466441--80466485 Score: 54
Period size: 20 Copynumber: 2.4 Consensus size: 18
80466431 AAAAGATGTT
* *
80466441 TTTACATATATTAATAAA
1 TTTATATATTTTAATAAA
80466459 TTTATATATATATTAATAAA
1 TTTATATAT-T-TTAATAAA
80466479 TTTATAT
1 TTTATAT
80466486 TTTAAATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 8 0.35
20 15 0.65
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTATATATTTTAATAAA
Found at i:80470099 original size:22 final size:22
Alignment explanation
Indices: 80470074--80470138 Score: 103
Period size: 22 Copynumber: 3.0 Consensus size: 22
80470064 CATAGAGCAG
*
80470074 ATCAATTGCCTTAAACAAAAAC
1 ATCAATGGCCTTAAACAAAAAC
80470096 ATCAATGGCCTTAAACAAAAAC
1 ATCAATGGCCTTAAACAAAAAC
* *
80470118 ATAAATGGCCTTAAAGAAAAA
1 ATCAATGGCCTTAAACAAAAA
80470139 AGAGCCCCAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 40 1.00
ACGTcount: A:0.52, C:0.18, G:0.09, T:0.20
Consensus pattern (22 bp):
ATCAATGGCCTTAAACAAAAAC
Done.