Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 263 of 313
Found at i:80476527 original size:51 final size:51
Alignment explanation
Indices: 80476468--80476571 Score: 199
Period size: 51 Copynumber: 2.0 Consensus size: 51
80476458 TCATATATCT
80476468 AGAAGTAGGGTAACATTATTACTTCTATAAGACTCTCCTCATGTGTTTAAG
1 AGAAGTAGGGTAACATTATTACTTCTATAAGACTCTCCTCATGTGTTTAAG
*
80476519 AGAAGTAGGGTAACATTATTACTTCTGTAAGACTCTCCTCATGTGTTTAAG
1 AGAAGTAGGGTAACATTATTACTTCTATAAGACTCTCCTCATGTGTTTAAG
80476570 AG
1 AG
80476572 CAGGTCATAT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (51 bp):
AGAAGTAGGGTAACATTATTACTTCTATAAGACTCTCCTCATGTGTTTAAG
Found at i:80476679 original size:49 final size:48
Alignment explanation
Indices: 80476626--80476737 Score: 125
Period size: 48 Copynumber: 2.3 Consensus size: 48
80476616 GAGTAGGAAT
* *
80476626 ATATTATTACTTTCCATAAGCCTTACTCCATATATCTGGAAGTAGGGTC
1 ATATTATTACTTTCCATAAGCC-TACCCCATACATCTGGAAGTAGGGTC
* * * * * *
80476675 ATATTATTATTTTCTATAAGCCTCCCCCATGCATTTGGGAGTAGGGTC
1 ATATTATTACTTTCCATAAGCCTACCCCATACATCTGGAAGTAGGGTC
*
80476723 ATATGATTACCTTTC
1 ATATTATTA-CTTTC
80476738 GTAAGCTCCC
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
48 28 0.54
49 24 0.46
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (48 bp):
ATATTATTACTTTCCATAAGCCTACCCCATACATCTGGAAGTAGGGTC
Found at i:80490041 original size:16 final size:15
Alignment explanation
Indices: 80490016--80490046 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
80490006 TCATTATGAT
80490016 TCAAAATATCCTCTA
1 TCAAAATATCCTCTA
80490031 TCAAGAATATCCTCTA
1 TCAA-AATATCCTCTA
80490047 ACCATGGATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.39, C:0.26, G:0.03, T:0.32
Consensus pattern (15 bp):
TCAAAATATCCTCTA
Found at i:80496577 original size:12 final size:13
Alignment explanation
Indices: 80496560--80496588 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
80496550 ACATAGGACC
80496560 TCTCACACGATT-
1 TCTCACACGATTG
80496572 TCTCACACGATTG
1 TCTCACACGATTG
80496585 TCTC
1 TCTC
80496589 CCCTTTAGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.21, C:0.34, G:0.10, T:0.34
Consensus pattern (13 bp):
TCTCACACGATTG
Found at i:80503093 original size:519 final size:519
Alignment explanation
Indices: 80502105--80503429 Score: 1950
Period size: 519 Copynumber: 2.6 Consensus size: 519
80502095 ACCTTTCGGG
* *
80502105 AATG-TCGTTGCAAACGCTCTAAATTGGAAGCAGGTGACTGATTTAAAGGCAATGTTGGCAAGGT
1 AATGTTCGTTGCAAACGCCCTAAATTGGAAGCAGGTGACTGATTTAAAGGCAATCTTGGCAAGGT
* *
80502169 TGAGTTTAATGGATGATGGAGGCTTGCTAACAGAATTGAAAGTAAAACCCACCTTAGCCAATGAG
66 TGAGTTTAATGGATGATGGAGGCTTGCTAGCAGAATTGCAAGTAAAACCCACCTTAGCCAATGAG
* * * *
80502234 ACCAAATCTAAACAACCTTTAGATATAACCCTATTACCTCGAATCAAGCTCATGGAAGAAGGAAA
131 ATCAAATCTAAACAACCCTCAGATATAACCCTATTACCTCGAATCAAGCTCATGGAAGAAGAAAA
** * * *
80502299 GATTGAGGATTTCT-GATTTCAGGATAATGGTATCTTGTGTTTCTGATGGAGGTTTTGTGTGGTG
196 GATTGAGGATTT-TAGATTT-AATATAATAGTAACTTGTGTTTCCGATGGAGGTTTTGTGTGGTG
* * * *
80502363 AATAATGATGAGTTAAGAGACACCATACTTAGTTGAAACAACATGAGTGCAACTACCCAACTCAT
259 AATGATGATGAGTTAAGACAAACCATACTTAGTTGAAACAACATCAGTGCAACTACCCAACTCAT
*
80502428 GACTTAAAGTTGGTTACAGTTGGTTTTTCACTTAAGATTTGGAGGTAGTATTTGTATAGGAAGAA
324 GACTTAAAGTTCGTTACAGTTGGTTTTTCACTTAAGATTTGGAGGTAGTATTTGTATAGGAAGAA
* *
80502493 GTATTACATCTACGCTAACCATAAGAACCTTAATTATCTTCTCACTTAAAAAAATTAAAGCTTAT
389 GTATTACATCTACACTAACCATAAGAACCTTAATTATCTTCTCACTTAAAAAAATTAAAGCTTAG
* ** * * *
80502558 GCAATAGAGGTGGTTAGAGCTATTGAAAATTATGATTTTGTGATTGATTA-C-CACCTTGGGAAA
454 GAAATAGACATGGTTAGAGCTATTGAAAATTATGATTGTGTGATTGAGTATCACACC--AGGAAA
80502621 GCC
517 GCC
* * *
80502624 AAAT-TTCGTTGCAAACACCCTAAGTTGGAAGCAGGTGATTGATTT-AAGTGCAATCTTGGCAAG
1 -AATGTTCGTTGCAAACGCCCTAAATTGGAAGCAGGTGACTGATTTAAAG-GCAATCTTGGCAAG
* * *
80502687 GTTGAGTTTAATGGATAATAGAGGCTTGCTAGCAGAATTGCAAGTAAAACCCACCTTAGCCAATA
64 GTTGAGTTTAATGGATGATGGAGGCTTGCTAGCAGAATTGCAAGTAAAACCCACCTTAGCCAATG
* *
80502752 AGATCAAATGTAAACAACCCTCAGATATAACTCTATTACCTCGAATCAAGCTCATGGAAGAAGAA
129 AGATCAAATCTAAACAACCCTCAGATATAACCCTATTACCTCGAATCAAGCTCATGGAAGAAGAA
*
80502817 AAGATTGAGGATTTTAGATTTAATATAATAGTAACTTGTGTTTCCGATGGAGGTTTTGTTTGGTG
194 AAGATTGAGGATTTTAGATTTAATATAATAGTAACTTGTGTTTCCGATGGAGGTTTTGTGTGGTG
*
80502882 AATGATGATGAGTTAAGACAAATCATACTTAGTTGAAACAACATCAGTGCAACTACCCAACTCAT
259 AATGATGATGAGTTAAGACAAACCATACTTAGTTGAAACAACATCAGTGCAACTACCCAACTCAT
*
80502947 GACTTAAAGTTCGTTGCAGTTGGTTTTTCACTTAAGATTTGGAGGTAGTATTTGTATAGGAAGAA
324 GACTTAAAGTTCGTTACAGTTGGTTTTTCACTTAAGATTTGGAGGTAGTATTTGTATAGGAAGAA
*
80503012 GTATTACATCTACACTAACCATAAGAACCTTAATTATCTTCTCACTTAAAAAAATTGAAGCTTAG
389 GTATTACATCTACACTAACCATAAGAACCTTAATTATCTTCTCACTTAAAAAAATTAAAGCTTAG
* * * *
80503077 GAAATGGACATGGTTAGAGCTGTTGAAACTTATGATTGTGTGATTGAGTATCACACCAGGAAAGT
454 GAAATAGACATGGTTAGAGCTATTGAAAATTATGATTGTGTGATTGAGTATCACACCAGGAAAGC
80503142 C
519 C
* * *
80503143 AATGTT-ATTGCAAACGCCCTAAATTGGAAGCATGTGACTGATTTAAAGGCAATTTTGGCAAGGT
1 AATGTTCGTTGCAAACGCCCTAAATTGGAAGCAGGTGACTGATTTAAAGGCAATCTTGGCAAGGT
* * * ***
80503207 TGAGTTTAATGGATGATGGAGTCTTGCTAGCAGAATTGCAAGTAAAACACGCCTTAGATGATGAG
66 TGAGTTTAATGGATGATGGAGGCTTGCTAGCAGAATTGCAAGTAAAACCCACCTTAGCCAATGAG
* * * *
80503272 ATCAAATCTAAACAACCCTCAGATATAACCCTGTTACCTCAAATCAAGCTCGTGAAAGAA-AGAA
131 ATCAAATCTAAACAACCCTCAGATATAACCCTATTACCTCGAATCAAGCTCATGGAAGAAGA-AA
* * * *
80503336 AGATTGAGGATTTTAGATTTAATGAT-ATTGTATA-TTGTGTTTTCGATAGAGGTTTTGTGTGTT
195 AGATTGAGGATTTTAGATTTAAT-ATAATAGTA-ACTTGTGTTTCCGATGGAGGTTTTGTGTGGT
**
80503399 GAATGATGATGAGTTAAGATGAACCATACTT
258 GAATGATGATGAGTTAAGACAAACCATACTT
80503430 CAAGAAGCTC
Statistics
Matches: 724, Mismatches: 71, Indels: 22
0.89 0.09 0.03
Matches are distributed among these distances:
517 1 0.00
518 244 0.34
519 284 0.39
520 191 0.26
521 4 0.01
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (519 bp):
AATGTTCGTTGCAAACGCCCTAAATTGGAAGCAGGTGACTGATTTAAAGGCAATCTTGGCAAGGT
TGAGTTTAATGGATGATGGAGGCTTGCTAGCAGAATTGCAAGTAAAACCCACCTTAGCCAATGAG
ATCAAATCTAAACAACCCTCAGATATAACCCTATTACCTCGAATCAAGCTCATGGAAGAAGAAAA
GATTGAGGATTTTAGATTTAATATAATAGTAACTTGTGTTTCCGATGGAGGTTTTGTGTGGTGAA
TGATGATGAGTTAAGACAAACCATACTTAGTTGAAACAACATCAGTGCAACTACCCAACTCATGA
CTTAAAGTTCGTTACAGTTGGTTTTTCACTTAAGATTTGGAGGTAGTATTTGTATAGGAAGAAGT
ATTACATCTACACTAACCATAAGAACCTTAATTATCTTCTCACTTAAAAAAATTAAAGCTTAGGA
AATAGACATGGTTAGAGCTATTGAAAATTATGATTGTGTGATTGAGTATCACACCAGGAAAGCC
Found at i:80505295 original size:111 final size:111
Alignment explanation
Indices: 80505101--80505322 Score: 435
Period size: 111 Copynumber: 2.0 Consensus size: 111
80505091 TAGAATTTTG
80505101 GTTATTTTTTCTTTAACCCTATTTAGAATTTATTTTTTCTCTCTTCTTTAAATACATATTTTTAT
1 GTTATTTTTTCTTTAACCCTATTTAGAATTTATTTTTTCTCTCTTCTTTAAATACATATTTTTAT
80505166 TTTATTTCCCACTTTTCATTTTCAGTAAATTTTCATCTTTTTCTAA
66 TTTATTTCCCACTTTTCATTTTCAGTAAATTTTCATCTTTTTCTAA
80505212 GTTATTTTTTCTTTAACCCTATTTAGAATTTATTTTTTCTCTCTTCTTTAAATACATATTTTTAT
1 GTTATTTTTTCTTTAACCCTATTTAGAATTTATTTTTTCTCTCTTCTTTAAATACATATTTTTAT
*
80505277 TTTATTTCCCACTTTTCATTTTCATTAAATTTTCATCTTTTTCTAA
66 TTTATTTCCCACTTTTCATTTTCAGTAAATTTTCATCTTTTTCTAA
80505323 AAATTTTATT
Statistics
Matches: 110, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
111 110 1.00
ACGTcount: A:0.23, C:0.16, G:0.02, T:0.59
Consensus pattern (111 bp):
GTTATTTTTTCTTTAACCCTATTTAGAATTTATTTTTTCTCTCTTCTTTAAATACATATTTTTAT
TTTATTTCCCACTTTTCATTTTCAGTAAATTTTCATCTTTTTCTAA
Found at i:80507750 original size:93 final size:93
Alignment explanation
Indices: 80507643--80507829 Score: 365
Period size: 93 Copynumber: 2.0 Consensus size: 93
80507633 AAAAATTACT
80507643 ATTTATAAAATAAACTAAAAAAGGAAAGTTTGTTTAAAAATATTTTATTTATAATTTTTTTAATA
1 ATTTATAAAATAAACTAAAAAAGGAAAGTTTGTTTAAAAATATTTTATTTATAATTTTTTTAATA
80507708 AATAAATTTCATGTAAGTAAAAGAGAAA
66 AATAAATTTCATGTAAGTAAAAGAGAAA
80507736 ATTTATAAAATAAACTAAAAAAGGAAAGTTTGTTTAAAAATATTTTATTTATAATTTTTTTAATA
1 ATTTATAAAATAAACTAAAAAAGGAAAGTTTGTTTAAAAATATTTTATTTATAATTTTTTTAATA
*
80507801 AATAAATTTCATGTCAGTAAAAGAGAAA
66 AATAAATTTCATGTAAGTAAAAGAGAAA
80507829 A
1 A
80507830 ATGGGTATTC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 93 1.00
ACGTcount: A:0.50, C:0.03, G:0.09, T:0.39
Consensus pattern (93 bp):
ATTTATAAAATAAACTAAAAAAGGAAAGTTTGTTTAAAAATATTTTATTTATAATTTTTTTAATA
AATAAATTTCATGTAAGTAAAAGAGAAA
Found at i:80509091 original size:21 final size:21
Alignment explanation
Indices: 80509065--80509115 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
80509055 AAGAGTTCTC
80509065 AAGATAACTCTTCAAAGGGTA
1 AAGATAACTCTTCAAAGGGTA
*
80509086 AAGATAACTCTTCAACGGGTA
1 AAGATAACTCTTCAAAGGGTA
80509107 AAGATAACT
1 AAGATAACT
80509116 TATATTATCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.43, C:0.16, G:0.18, T:0.24
Consensus pattern (21 bp):
AAGATAACTCTTCAAAGGGTA
Found at i:80512736 original size:6 final size:6
Alignment explanation
Indices: 80512725--80512761 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
80512715 TTATGTAATT
* *
80512725 TGAATC TGAATC TGAATC TGAATC TAAATC TGTATC T
1 TGAATC TGAATC TGAATC TGAATC TGAATC TGAATC T
80512762 AACTGTATGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (6 bp):
TGAATC
Found at i:80517848 original size:19 final size:17
Alignment explanation
Indices: 80517811--80517853 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
80517801 GTAAATTTTC
* *
80517811 TATTTTTTGATTTTTTA
1 TATTTTTTGAATTTCTA
80517828 TAATTTTCTTGAATTTCTA
1 T-ATTTT-TTGAATTTCTA
80517847 TATTTTT
1 TATTTTT
80517854 AAATAAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 2 0.09
18 10 0.45
19 10 0.45
ACGTcount: A:0.21, C:0.05, G:0.05, T:0.70
Consensus pattern (17 bp):
TATTTTTTGAATTTCTA
Found at i:80518174 original size:18 final size:18
Alignment explanation
Indices: 80518151--80518206 Score: 60
Period size: 21 Copynumber: 3.0 Consensus size: 18
80518141 TGAACTTGTG
*
80518151 AAAAATATTATTAGAAAT
1 AAAAATATTATTAAAAAT
80518169 AAAAATAATATATTTAAAAAT
1 AAAAAT-AT-TA-TTAAAAAT
*
80518190 AAAAAT-TTATAAAAAAT
1 AAAAATATTATTAAAAAT
80518207 GTTTAAAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
17 7 0.21
18 8 0.24
19 3 0.09
20 2 0.06
21 13 0.39
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (18 bp):
AAAAATATTATTAAAAAT
Found at i:80518422 original size:26 final size:27
Alignment explanation
Indices: 80518370--80518424 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
80518360 AGAATGAATG
*
80518370 ATATCATGATTCATAAAAAAAAGGTTC
1 ATATCATGATTCATAAAAAAAACGTTC
80518397 ATATCATGATTCAT-AAAAAAACGTTC
1 ATATCATGATTCATAAAAAAAACGTTC
80518423 AT
1 AT
80518425 TTGTCCATGA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 13 0.48
27 14 0.52
ACGTcount: A:0.47, C:0.13, G:0.09, T:0.31
Consensus pattern (27 bp):
ATATCATGATTCATAAAAAAAACGTTC
Found at i:80520712 original size:17 final size:16
Alignment explanation
Indices: 80520690--80520724 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
80520680 AAAATAAAAA
*
80520690 TTAATTTTTTTAATGTT
1 TTAATTTATTTAA-GTT
80520707 TTAATTTATTTAAGTT
1 TTAATTTATTTAAGTT
80520723 TT
1 TT
80520725 GAAAAAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.69
Consensus pattern (16 bp):
TTAATTTATTTAAGTT
Found at i:80525350 original size:20 final size:18
Alignment explanation
Indices: 80525306--80525376 Score: 52
Period size: 19 Copynumber: 3.8 Consensus size: 18
80525296 ATTGTAAAAA
80525306 TATAAAAATATAAAATGT
1 TATAAAAATATAAAATGT
* * *
80525324 AAAAAAAATATATAAATTTT
1 TATAAAAATATA-AAA-TGT
* **
80525344 TATAAAATTATAAGAAAAT
1 TATAAAAATATAA-AATGT
*
80525363 GATAAAAATATAAA
1 TATAAAAATATAAA
80525377 GAATTATAAA
Statistics
Matches: 40, Mismatches: 10, Indels: 6
0.71 0.18 0.11
Matches are distributed among these distances:
18 11 0.28
19 16 0.40
20 13 0.32
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (18 bp):
TATAAAAATATAAAATGT
Found at i:80525410 original size:9 final size:9
Alignment explanation
Indices: 80525227--80525412 Score: 87
Period size: 10 Copynumber: 20.0 Consensus size: 9
80525217 GTTGTGACAA
*
80525227 AAAAATGAT
1 AAAAATTAT
80525236 AAAAA--AT
1 AAAAATTAT
*
80525243 AAAAATCAAT
1 AAAAAT-TAT
*
80525253 AAAATTTAT
1 AAAAATTAT
* *
80525262 TAAATTTATT
1 AAAAATTA-T
* *
80525272 AAAAACTAGA
1 AAAAATTA-T
80525282 AAAATATTAT
1 AAAA-ATTAT
*
80525292 AAAAATTGT
1 AAAAATTAT
80525301 AAAAA-TAT
1 AAAAATTAT
80525309 AAAAA-TAT
1 AAAAATTAT
*
80525317 -AAAATGTAA
1 AAAAAT-TAT
*
80525326 AAAAAATAT
1 AAAAATTAT
* *
80525335 ATAAATTTTT
1 A-AAAATTAT
80525345 ATAAAATTAT
1 A-AAAATTAT
*
80525355 AAGAAAATGAT
1 -A-AAAATTAT
80525366 AAAAA-TAT
1 AAAAATTAT
80525374 AAAGAATTAT
1 AAA-AATTAT
* *
80525384 AAAATTTGT
1 AAAAATTAT
80525393 AAAAGAATTAT
1 -AAA-AATTAT
80525404 AAAAATTAT
1 AAAAATTAT
80525413 CATACCAAAA
Statistics
Matches: 136, Mismatches: 27, Indels: 28
0.71 0.14 0.15
Matches are distributed among these distances:
7 11 0.08
8 15 0.11
9 44 0.32
10 51 0.38
11 15 0.11
ACGTcount: A:0.63, C:0.01, G:0.05, T:0.31
Consensus pattern (9 bp):
AAAAATTAT
Found at i:80525643 original size:38 final size:38
Alignment explanation
Indices: 80525593--80525680 Score: 124
Period size: 37 Copynumber: 2.3 Consensus size: 38
80525583 TTTTGATGCA
* * * *
80525593 TTTTATAATTTTTTATGATTTTTATTAAATTTTACA-AT
1 TTTTAT-ATTTTTTCTAATTTTTAGTAAATTTTAAATAT
80525631 TTTTATATTTTTTCTAATTTTTAGTAAATTTTAAATAT
1 TTTTATATTTTTTCTAATTTTTAGTAAATTTTAAATAT
80525669 TTTTATATTTTT
1 TTTTATATTTTT
80525681 ATTAAAGTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
37 25 0.56
38 20 0.44
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (38 bp):
TTTTATATTTTTTCTAATTTTTAGTAAATTTTAAATAT
Found at i:80525662 original size:28 final size:27
Alignment explanation
Indices: 80525593--80525735 Score: 112
Period size: 28 Copynumber: 5.1 Consensus size: 27
80525583 TTTTGATGCA
* *
80525593 TTTTATAATTTTTTATGA-TTTTTATTAAA
1 TTTTATAA-ATTTTAT-ATTTTTTA-TAAT
* * *
80525622 TTTTACAATTTTTATATTTTTTCTAAT
1 TTTTATAAATTTTATATTTTTTATAAT
*
80525649 TTTTAGTAAATTTTAAATATTTTTAT-AT
1 TTTTA-TAAATTTTATAT-TTTTTATAAT
* *
80525677 TTTTATTAAAGTTTAATAATTTTTATAAT
1 TTTTA-TAAA-TTTTATATTTTTTATAAT
* *
80525706 TTTTATAACTTTTAT-TTTTTTATCAT
1 TTTTATAAATTTTATATTTTTTATAAT
80525732 TTTT
1 TTTT
80525736 TGTCATATGT
Statistics
Matches: 94, Mismatches: 15, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
26 13 0.14
27 14 0.15
28 42 0.45
29 25 0.27
ACGTcount: A:0.30, C:0.03, G:0.02, T:0.65
Consensus pattern (27 bp):
TTTTATAAATTTTATATTTTTTATAAT
Found at i:80525680 original size:9 final size:9
Alignment explanation
Indices: 80525593--80525735 Score: 110
Period size: 9 Copynumber: 15.4 Consensus size: 9
80525583 TTTTGATGCA
80525593 TTTTATAATT
1 TTTTATAA-T
*
80525603 TTTTATGAT
1 TTTTATAAT
*
80525612 TTTTATTAAA
1 TTTTA-TAAT
*
80525622 TTTTACAAT
1 TTTTATAAT
*
80525631 TTTTATATT
1 TTTTATAAT
*
80525640 TTTTCTAAT
1 TTTTATAAT
*
80525649 TTTTAGTAAA
1 TTTTA-TAAT
*
80525659 TTTTAAATAT
1 TTTTATA-AT
80525669 TTTTAT-AT
1 TTTTATAAT
*
80525677 TTTTATTAAAG
1 TTTTA-T-AAT
*
80525688 TTTAATAAT
1 TTTTATAAT
80525697 TTTTATAAT
1 TTTTATAAT
*
80525706 TTTTATAAC
1 TTTTATAAT
*
80525715 TTTTAT-TT
1 TTTTATAAT
*
80525723 TTTTATCAT
1 TTTTATAAT
80525732 TTTT
1 TTTT
80525736 TGTCATATGT
Statistics
Matches: 104, Mismatches: 22, Indels: 15
0.74 0.16 0.11
Matches are distributed among these distances:
8 13 0.12
9 57 0.55
10 29 0.28
11 5 0.05
ACGTcount: A:0.30, C:0.03, G:0.02, T:0.65
Consensus pattern (9 bp):
TTTTATAAT
Found at i:80525701 original size:38 final size:37
Alignment explanation
Indices: 80525613--80525721 Score: 112
Period size: 38 Copynumber: 2.9 Consensus size: 37
80525603 TTTTATGATT
* * **
80525613 TTTATTAAATTTTACAATTTTTATATTTTT-TCTAATT
1 TTTAATAAATTTTAAAATTTTTATATTTTTAT-TAAAG
*
80525650 TTTAGTAAATTTTAAATATTTTTATATTTTTATTAAAG
1 TTTAATAAATTTTAAA-ATTTTTATATTTTTATTAAAG
* * *
80525688 TTTAATAATTTTTATAATTTTTATAACTTTTATT
1 TTTAATAAATTTTAAAATTTTTAT-ATTTTTATT
80525722 TTTTTATCAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
37 22 0.36
38 38 0.62
39 1 0.02
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (37 bp):
TTTAATAAATTTTAAAATTTTTATATTTTTATTAAAG
Found at i:80530377 original size:24 final size:23
Alignment explanation
Indices: 80530333--80530384 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 23
80530323 TTAACATTCA
*
80530333 CGAACGTTAAAAGAACATGTTCG
1 CGAACATTAAAAGAACATGTTCG
*
80530356 CGAACATTAAAATGAACATGTTTG
1 CGAACATTAAAA-GAACATGTTCG
80530380 CGAAC
1 CGAAC
80530385 GCTAAATGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 11 0.42
24 15 0.58
ACGTcount: A:0.40, C:0.17, G:0.19, T:0.23
Consensus pattern (23 bp):
CGAACATTAAAAGAACATGTTCG
Found at i:80530390 original size:24 final size:24
Alignment explanation
Indices: 80530333--80530394 Score: 83
Period size: 23 Copynumber: 2.7 Consensus size: 24
80530323 TTAACATTCA
80530333 CGAACGTTAAAA-GAACATGTTCG
1 CGAACGTTAAAATGAACATGTTCG
* *
80530356 CGAACATTAAAATGAACATGTTTG
1 CGAACGTTAAAATGAACATGTTCG
*
80530380 CGAACGCT-AAATGAA
1 CGAACGTTAAAATGAA
80530395 TCGAGCTCAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
23 18 0.53
24 16 0.47
ACGTcount: A:0.42, C:0.16, G:0.19, T:0.23
Consensus pattern (24 bp):
CGAACGTTAAAATGAACATGTTCG
Found at i:80530864 original size:5 final size:5
Alignment explanation
Indices: 80530818--80530851 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
80530808 CTATAATGTT
*
80530818 ATATC ATATC ATATC ATATA ATATC ATATC ATAT
1 ATATC ATATC ATATC ATATC ATATC ATATC ATAT
80530852 AGTATATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (5 bp):
ATATC
Found at i:80536555 original size:21 final size:20
Alignment explanation
Indices: 80536531--80536577 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
80536521 AATTGTTATA
80536531 TATTATATTATTAATAGTATG
1 TATTATATTATT-ATAGTATG
**
80536552 TATTATATTATTATTTTATG
1 TATTATATTATTATAGTATG
80536572 TATTAT
1 TATTAT
80536578 TAATATACTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 12 0.50
21 12 0.50
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (20 bp):
TATTATATTATTATAGTATG
Found at i:80537099 original size:17 final size:16
Alignment explanation
Indices: 80537077--80537108 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
80537067 CAAAATTTTT
80537077 AAGTTTGAATCTATTAC
1 AAGTTTGAATC-ATTAC
80537094 AAGTTTGAATCATTA
1 AAGTTTGAATCATTA
80537109 TAGACTTAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.38, C:0.09, G:0.12, T:0.41
Consensus pattern (16 bp):
AAGTTTGAATCATTAC
Found at i:80537841 original size:13 final size:16
Alignment explanation
Indices: 80537810--80537843 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
80537800 TAATTTAATT
80537810 ATATGATACAAATATA
1 ATATGATACAAATATA
* *
80537826 ATATGATAAAAAAATA
1 ATATGATACAAATATA
80537842 AT
1 AT
80537844 TAAAACATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.29
Consensus pattern (16 bp):
ATATGATACAAATATA
Found at i:80541015 original size:23 final size:21
Alignment explanation
Indices: 80540986--80541045 Score: 59
Period size: 23 Copynumber: 2.7 Consensus size: 21
80540976 AACTAAATAT
80540986 AATTAAT-TAATAATTAATAAAA
1 AATTAATATAA-AATTAA-AAAA
*
80541008 ATATTAATATAAAGTTAAAAAA
1 A-ATTAATATAAAATTAAAAAA
80541030 AATTAAATATTAAAAT
1 AATT-AATA-TAAAAT
80541046 CATATATCGT
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
21 3 0.09
22 10 0.31
23 16 0.50
24 3 0.09
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (21 bp):
AATTAATATAAAATTAAAAAA
Found at i:80543135 original size:12 final size:12
Alignment explanation
Indices: 80543099--80543135 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
80543089 CAGATAAAGG
80543099 TAGTGGAATCCA
1 TAGTGGAATCCA
* *
80543111 CAGTGGAACCCA
1 TAGTGGAATCCA
80543123 TAGTGGAATCCA
1 TAGTGGAATCCA
80543135 T
1 T
80543136 GGCTAAAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.22
Consensus pattern (12 bp):
TAGTGGAATCCA
Found at i:80550438 original size:24 final size:24
Alignment explanation
Indices: 80550411--80550462 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
80550401 TTAGTAAGTC
*
80550411 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
80550435 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
80550459 AAAT
1 AAAT
80550463 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:80552408 original size:24 final size:24
Alignment explanation
Indices: 80552381--80552432 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
80552371 TTAGTAAGTC
*
80552381 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
80552405 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
80552429 AAAT
1 AAAT
80552433 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:80553967 original size:16 final size:16
Alignment explanation
Indices: 80553946--80553986 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
80553936 GGTTAAATGT
80553946 GATTAAGATTTAATTA
1 GATTAAGATTTAATTA
*
80553962 GATTAAGGTTTAATTA
1 GATTAAGATTTAATTA
80553978 -ATTAA-ATTT
1 GATTAAGATTT
80553987 GGTTTAATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 3 0.13
15 5 0.22
16 15 0.65
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.46
Consensus pattern (16 bp):
GATTAAGATTTAATTA
Found at i:80554234 original size:19 final size:19
Alignment explanation
Indices: 80554206--80554244 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
80554196 AGAGTGAAAG
*
80554206 AAACGAG-AAATTGGCCAA
1 AAACGAGAAAATGGGCCAA
80554224 AAACAGAGAAAATGGGCCAA
1 AAAC-GAGAAAATGGGCCAA
80554244 A
1 A
80554245 GTACGAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 3 0.17
20 11 0.61
ACGTcount: A:0.54, C:0.15, G:0.23, T:0.08
Consensus pattern (19 bp):
AAACGAGAAAATGGGCCAA
Found at i:80555070 original size:13 final size:13
Alignment explanation
Indices: 80555052--80555077 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
80555042 CTAAAGGTCA
80555052 TGACCTTTAGCGG
1 TGACCTTTAGCGG
80555065 TGACCTTTAGCGG
1 TGACCTTTAGCGG
80555078 CGCTTTTCCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.31, T:0.31
Consensus pattern (13 bp):
TGACCTTTAGCGG
Found at i:80555132 original size:43 final size:43
Alignment explanation
Indices: 80555066--80555234 Score: 223
Period size: 43 Copynumber: 3.9 Consensus size: 43
80555056 CTTTAGCGGT
* * *
80555066 GACCTTTAGCGGCGCTTTTCCCACAAATGCCGCTAGAGGTCAA
1 GACCTTTAGCGGAGCTTTCCCCACAAACGCCGCTAGAGGTCAA
*
80555109 GACCTTTAGCGGAGCTTTCCCCACAAACGCCGCTAGAGATCAA
1 GACCTTTAGCGGAGCTTTCCCCACAAACGCCGCTAGAGGTCAA
* * **
80555152 GACCTTTAGCGGCGGTTTCCCCACAAACGCCGCTAGAGGTCTT
1 GACCTTTAGCGGAGCTTTCCCCACAAACGCCGCTAGAGGTCAA
* * *
80555195 GACCTTTAG-TGACGCTTTTCCCACAAACGCCGCTAAAGGT
1 GACCTTTAGCGGA-GCTTTCCCCACAAACGCCGCTAGAGGT
80555235 AATGAAATTT
Statistics
Matches: 111, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
42 1 0.01
43 110 0.99
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.22
Consensus pattern (43 bp):
GACCTTTAGCGGAGCTTTCCCCACAAACGCCGCTAGAGGTCAA
Found at i:80555212 original size:86 final size:86
Alignment explanation
Indices: 80555066--80555229 Score: 249
Period size: 86 Copynumber: 1.9 Consensus size: 86
80555056 CTTTAGCGGT
* *
80555066 GACCTTTAGCGGCGCTTTTCCCACAAATGCCGCTAGAGGTCAAGACCTTTAGCGGAGCTTTCCCC
1 GACCTTTAGCGGCGCTTTCCCCACAAACGCCGCTAGAGGTCAAGACCTTTAGCGGAGCTTTCCCC
80555131 ACAAACGCCGCTAGAGATCAA
66 ACAAACGCCGCTAGAGATCAA
* ** * *
80555152 GACCTTTAGCGGCGGTTTCCCCACAAACGCCGCTAGAGGTCTTGACCTTTAG-TGACGCTTTTCC
1 GACCTTTAGCGGCGCTTTCCCCACAAACGCCGCTAGAGGTCAAGACCTTTAGCGGA-GCTTTCCC
80555216 CACAAACGCCGCTA
65 CACAAACGCCGCTA
80555230 AAGGTAATGA
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
85 2 0.03
86 68 0.97
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.23
Consensus pattern (86 bp):
GACCTTTAGCGGCGCTTTCCCCACAAACGCCGCTAGAGGTCAAGACCTTTAGCGGAGCTTTCCCC
ACAAACGCCGCTAGAGATCAA
Found at i:80556431 original size:138 final size:138
Alignment explanation
Indices: 80556276--80556547 Score: 474
Period size: 138 Copynumber: 2.0 Consensus size: 138
80556266 TTTTAAAATT
80556276 TTAAATCAAATAAGTTGCATAATAACATAACAAAGAGAAATGTTAATATAAAACCTAAAAACAAT
1 TTAAATCAAATAAGTTGCATAATAACATAACAAAGAGAAATGTTAATATAAAACCTAAAAACAAT
* * *
80556341 TTAATGCCAATTTTTAAGGAAATTACATATGGTTCTAAAATTCAAAACAAGTACTCCTA-AAAGC
66 TTAATGCCAATTTTTAAAGAAATTACATATGATTCTAAAATTCAAAACAAGGACTCC-ACAAAGC
80556405 ATCCAGACG
130 ATCCAGACG
*
80556414 TTAAATCAAATAAGTTGCATAATAACATAACAAAGAGAAATGTTATTATAAAACCTAAAAACAAT
1 TTAAATCAAATAAGTTGCATAATAACATAACAAAGAGAAATGTTAATATAAAACCTAAAAACAAT
* *
80556479 TTAATGCCAATTTTTAAAGAGATTACATATGATTCTAAAATTCAAAACAGGGACTCCACAAAGCA
66 TTAATGCCAATTTTTAAAGAAATTACATATGATTCTAAAATTCAAAACAAGGACTCCACAAAGCA
80556544 TCCA
131 TCCA
80556548 TACATTATTA
Statistics
Matches: 127, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
137 1 0.01
138 126 0.99
ACGTcount: A:0.49, C:0.15, G:0.10, T:0.27
Consensus pattern (138 bp):
TTAAATCAAATAAGTTGCATAATAACATAACAAAGAGAAATGTTAATATAAAACCTAAAAACAAT
TTAATGCCAATTTTTAAAGAAATTACATATGATTCTAAAATTCAAAACAAGGACTCCACAAAGCA
TCCAGACG
Found at i:80558842 original size:15 final size:15
Alignment explanation
Indices: 80558809--80558851 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
80558799 TTATCTCTTA
*
80558809 CATAA-CCATAAA-T
1 CATAATCCATAAACC
*
80558822 CATAATCCCTAAACC
1 CATAATCCATAAACC
80558837 CATAATCCATAAACC
1 CATAATCCATAAACC
80558852 TTAAAATAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 5 0.20
14 6 0.24
15 14 0.56
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.21
Consensus pattern (15 bp):
CATAATCCATAAACC
Found at i:80558856 original size:22 final size:22
Alignment explanation
Indices: 80558814--80558900 Score: 52
Period size: 22 Copynumber: 4.0 Consensus size: 22
80558804 TCTTACATAA
*
80558814 CCATAAATCATAATCCCTAAAC
1 CCATAAATCATAAACCCTAAAC
* *
80558836 CCAT-AATCCATAAACCTTAAAA
1 CCATAAAT-CATAAACCCTAAAC
** * * **
80558858 TAATAACTCATACACTTTAAAC
1 CCATAAATCATAAACCCTAAAC
* *
80558880 CC-TAAACCCTAAACCCTAAAC
1 CCATAAATCATAAACCCTAAAC
80558901 TATAATGATA
Statistics
Matches: 46, Mismatches: 17, Indels: 5
0.68 0.25 0.07
Matches are distributed among these distances:
21 16 0.35
22 28 0.61
23 2 0.04
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.23
Consensus pattern (22 bp):
CCATAAATCATAAACCCTAAAC
Found at i:80558887 original size:7 final size:7
Alignment explanation
Indices: 80558875--80558900 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
80558865 TCATACACTT
80558875 TAAACCC
1 TAAACCC
80558882 TAAACCC
1 TAAACCC
80558889 TAAACCC
1 TAAACCC
80558896 TAAAC
1 TAAAC
80558901 TATAATGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.46, C:0.38, G:0.00, T:0.15
Consensus pattern (7 bp):
TAAACCC
Found at i:80559021 original size:15 final size:15
Alignment explanation
Indices: 80558997--80559038 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
80558987 CACTAACTAA
80558997 TCTAAACCCTAAACT
1 TCTAAACCCTAAACT
* *
80559012 TCTAATCCCTAAACC
1 TCTAAACCCTAAACT
*
80559027 T-TAAACCTTAAA
1 TCTAAACCCTAAA
80559039 ACATAAGCCC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
14 9 0.39
15 14 0.61
ACGTcount: A:0.40, C:0.31, G:0.00, T:0.29
Consensus pattern (15 bp):
TCTAAACCCTAAACT
Found at i:80559380 original size:41 final size:40
Alignment explanation
Indices: 80559303--80559389 Score: 111
Period size: 41 Copynumber: 2.1 Consensus size: 40
80559293 TCAAATACAT
80559303 TTAAAACAAATATTAAAACAAGAAACAAATAAAAAATGATA
1 TTAAAACAAATATTAAAACAAGAAACAAATAAAAAAT-ATA
* * * **
80559344 TTAAAACAATTATTAAAACAATAGACAAATTGAAAATATA
1 TTAAAACAAATATTAAAACAAGAAACAAATAAAAAATATA
*
80559384 ATAAAA
1 TTAAAA
80559390 AGTGATTATA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
40 8 0.20
41 32 0.80
ACGTcount: A:0.66, C:0.07, G:0.05, T:0.23
Consensus pattern (40 bp):
TTAAAACAAATATTAAAACAAGAAACAAATAAAAAATATA
Found at i:80559677 original size:41 final size:41
Alignment explanation
Indices: 80559613--80559873 Score: 348
Period size: 41 Copynumber: 6.4 Consensus size: 41
80559603 ATTATATTAC
* * *
80559613 TTTTAGCGGCGTTTTATCGAAAGCGCCGCTACTGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
80559654 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
***
80559695 TTTTAGCGGCGTTTTTGGTAAAA-CGCCGCTAATGCTCTGGT
1 TTTTAGCGGCG-TTTTACCAAAAGCGCCGCTAATGCTCTGGT
*
80559736 TTTTAGTGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* *
80559777 TTTTAGCGGCGTTTTACCAAAAACGCCGCTAATGCACT-GT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * * *
80559817 TTTTAGCGGCGTTTTAACAAAAAAACACCGCTATTGCTCT-GT
1 TTTTAGCGGCGTTTT-AC-CAAAAGCGCCGCTAATGCTCTGGT
*
80559859 TTTTAGCGGCATTTT
1 TTTTAGCGGCGTTTT
80559874 TGGTAAAACG
Statistics
Matches: 198, Mismatches: 18, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
40 25 0.13
41 132 0.67
42 41 0.21
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.34
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
Found at i:80559750 original size:82 final size:82
Alignment explanation
Indices: 80559613--80559904 Score: 383
Period size: 82 Copynumber: 3.6 Consensus size: 82
80559603 ATTATATTAC
* *
80559613 TTTTAGCGGCGTTTTATCG-AAAGCGCCGCTACTGCTCTGGTTTTTAGCGGCGTTTTACCAAAAG
1 TTTTAGCGGCGTTTT-TCGTAAAACGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCAAAAG
80559677 CGCCGCTAATGCTCTGGT
65 CGCCGCTAATGCTCTGGT
* *
80559695 TTTTAGCGGCGTTTTTGGTAAAACGCCGCTAATGCTCTGGTTTTTAGTGGCGTTTTACCAAAAGC
1 TTTTAGCGGCGTTTTTCGTAAAACGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCAAAAGC
80559760 GCCGCTAATGCTCTGGT
66 GCCGCTAATGCTCTGGT
* ** * *
80559777 TTTTAGCGGCGTTTTACCAAAAACGCCGCTAATGCACT-GTTTTTAGCGGCGTTTTAACAAAAAA
1 TTTTAGCGGCGTTTTTCGTAAAACGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTT-AC-CAAAA
* * *
80559841 ACACCGCTATTGCTCT-GT
64 GCGCCGCTAATGCTCTGGT
* * * * *
80559859 TTTTAGCGGCATTTTTGGTAAAACGCCGCTATTGCTCCGTTTTTTA
1 TTTTAGCGGCGTTTTTCGTAAAACGCCGCTAATGCTCTGGTTTTTA
80559905 TAATTTTTGT
Statistics
Matches: 183, Mismatches: 23, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
81 18 0.10
82 142 0.78
83 23 0.13
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (82 bp):
TTTTAGCGGCGTTTTTCGTAAAACGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCAAAAGC
GCCGCTAATGCTCTGGT
Found at i:80559886 original size:123 final size:121
Alignment explanation
Indices: 80559613--80559904 Score: 336
Period size: 123 Copynumber: 2.4 Consensus size: 121
80559603 ATTATATTAC
* * * *
80559613 TTTTAGCGGCGTTTTATCGAAAGCGCCGCTACTGCTCTGGTTTTTAGCGGCGTTTTACCAAAAGC
1 TTTTAGCGGC-TTTT-TAGAAAACGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCAAAAAC
* **** *
80559678 GCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTTGGTAAAACGCCGCTAATGCTCTGGT
64 GCCGCTAATGCACTGGTTTTTAGCGGCGTTTTCAAAAAAACACCGCTAATGCTCTGGT
* * *
80559736 TTTTAGTGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCAAAAAC
1 TTTTAGCGGCTTTTTA-GAAAA-CGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCAAAAAC
*
80559801 GCCGCTAATGCACT-GTTTTTAGCGGCGTTTTAACAAAAAAACACCGCTATTGCTCT-GT
64 GCCGCTAATGCACTGGTTTTTAGCGGCGTTTT--CAAAAAAACACCGCTAATGCTCTGGT
* * * *
80559859 TTTTAGCGGCATTTTTGGTAAAACGCCGCTATTGCTCCGTTTTTTA
1 TTTTAGCGGC-TTTTTAG-AAAACGCCGCTAATGCTCTGGTTTTTA
80559905 TAATTTTTGT
Statistics
Matches: 142, Mismatches: 21, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
121 1 0.01
122 23 0.16
123 93 0.65
124 25 0.18
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (121 bp):
TTTTAGCGGCTTTTTAGAAAACGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCAAAAACGC
CGCTAATGCACTGGTTTTTAGCGGCGTTTTCAAAAAAACACCGCTAATGCTCTGGT
Found at i:80564281 original size:46 final size:46
Alignment explanation
Indices: 80564214--80564338 Score: 173
Period size: 46 Copynumber: 2.7 Consensus size: 46
80564204 TGTAACTCGC
* * *
80564214 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGC-GTTCGCAT
1 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGACAG-TCGCAT
80564260 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGACAGTCGCAT
1 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGACAGTCGCAT
* *
80564306 CCATAAGTGAACTC-AGACTCGACTTAACGAGCT
1 CCATAAGTGAACTCGA-ACTCAACTCAACGAGCT
80564339 TGGATGCCCA
Statistics
Matches: 72, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
45 1 0.01
46 70 0.97
47 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.18
Consensus pattern (46 bp):
CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGACAGTCGCAT
Found at i:80566912 original size:33 final size:33
Alignment explanation
Indices: 80566867--80566935 Score: 93
Period size: 33 Copynumber: 2.1 Consensus size: 33
80566857 CAACAATAGG
*
80566867 AGGTCGATTTTCAGTCGACACTACCCCTTCAGC
1 AGGTCGACTTTCAGTCGACACTACCCCTTCAGC
* * * *
80566900 AGGTCGACTTTCAGTTGGCACTGCCCCTTTAGC
1 AGGTCGACTTTCAGTCGACACTACCCCTTCAGC
80566933 AGG
1 AGG
80566936 AGCTGGCGCA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.19, C:0.30, G:0.23, T:0.28
Consensus pattern (33 bp):
AGGTCGACTTTCAGTCGACACTACCCCTTCAGC
Found at i:80568520 original size:45 final size:46
Alignment explanation
Indices: 80568428--80568552 Score: 200
Period size: 45 Copynumber: 2.7 Consensus size: 46
80568418 AACCCGCCCT
* *
80568428 TAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCA
80568474 TAAGTGAACTCGGACTCAACTCAACGA-CTCGGACAG-TCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGAC-GTTCGCATCCA
*
80568519 TATGTGAACTCGGACTCAACTCAACGAGCTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
80568553 TGCCCAAATA
Statistics
Matches: 74, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
45 41 0.55
46 33 0.45
ACGTcount: A:0.29, C:0.30, G:0.22, T:0.18
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCA
Found at i:80579881 original size:5 final size:5
Alignment explanation
Indices: 80579873--80579906 Score: 59
Period size: 5 Copynumber: 6.6 Consensus size: 5
80579863 TAAGTCCAAT
80579873 AAATA AAATAA AAATA AAATA AAATA AAATA AAA
1 AAATA AAAT-A AAATA AAATA AAATA AAATA AAA
80579907 AACTAAATGG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 23 0.82
6 5 0.18
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAATA
Found at i:80579890 original size:15 final size:14
Alignment explanation
Indices: 80579870--80579905 Score: 54
Period size: 16 Copynumber: 2.4 Consensus size: 14
80579860 AAATAAGTCC
80579870 AATAAATAAAATAAA
1 AATAAATAAAAT-AA
80579885 AATAAAATAAAATAA
1 AAT-AAATAAAATAA
80579900 AATAAA
1 AATAAA
80579906 AAACTAAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 3 0.15
15 8 0.40
16 9 0.45
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (14 bp):
AATAAATAAAATAA
Found at i:80590685 original size:30 final size:30
Alignment explanation
Indices: 80590649--80590706 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
80590639 CAGGGCCATG
* *
80590649 TCACACGAGCATGTGGTTTGCCCGTGTGCC
1 TCACACGAGCATATGGTTTACCCGTGTGCC
* *
80590679 TCACACGGGCCTATGGTTTACCCGTGTG
1 TCACACGAGCATATGGTTTACCCGTGTG
80590707 GAAGTGCTTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.14, C:0.29, G:0.29, T:0.28
Consensus pattern (30 bp):
TCACACGAGCATATGGTTTACCCGTGTGCC
Found at i:80595719 original size:27 final size:28
Alignment explanation
Indices: 80595635--80595732 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
80595625 CCTGAGATTG
* * * *
80595635 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
80595664 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
80595692 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
80595719 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
80595733 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:80595743 original size:27 final size:27
Alignment explanation
Indices: 80595663--80595745 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
80595653 TAAATTGTAC
* *
80595663 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
80595691 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
80595718 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
80595745 A
1 A
80595746 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:80595746 original size:29 final size:27
Alignment explanation
Indices: 80595635--80595746 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
80595625 CCTGAGATTG
** * *
80595635 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
80595664 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
80595692 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
80595719 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
80595747 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:80612841 original size:26 final size:26
Alignment explanation
Indices: 80612806--80612856 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
80612796 AACATATTTT
**
80612806 ATCAAAATTTTACTAGGGGTAAAATC
1 ATCAAAATTTTACTAAAGGTAAAATC
*
80612832 ATCAACATTTTACTAAAGGTAAAAT
1 ATCAAAATTTTACTAAAGGTAAAAT
80612857 AGGGATGAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.31
Consensus pattern (26 bp):
ATCAAAATTTTACTAAAGGTAAAATC
Found at i:80618087 original size:34 final size:33
Alignment explanation
Indices: 80618049--80618116 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 33
80618039 ACTCCTTAAG
*
80618049 ACGCTCTTCATCGGTGCCCCAAGATATCCCACC
1 ACGCTCTTCATCGGTACCCCAAGATATCCCACC
* *
80618082 NACGCTCTTCATTGGTATCCCAAGATATCCCACC
1 -ACGCTCTTCATCGGTACCCCAAGATATCCCACC
80618116 A
1 A
80618117 ATAAATAGCT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
33 1 0.03
34 30 0.97
ACGTcount: A:0.24, C:0.38, G:0.13, T:0.24
Consensus pattern (33 bp):
ACGCTCTTCATCGGTACCCCAAGATATCCCACC
Found at i:80618757 original size:16 final size:16
Alignment explanation
Indices: 80618679--80618749 Score: 115
Period size: 16 Copynumber: 4.4 Consensus size: 16
80618669 CGCTGTATTA
80618679 GAATAGAGGCGTAATG
1 GAATAGAGGCGTAATG
*
80618695 GACTAGAGGCGTAATG
1 GAATAGAGGCGTAATG
80618711 GAATAGAGGCGTAATG
1 GAATAGAGGCGTAATG
*
80618727 GAATAGAGGTGTAATG
1 GAATAGAGGCGTAATG
*
80618743 GATTAGA
1 GAATAGA
80618750 TGTGTAATAG
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 51 1.00
ACGTcount: A:0.37, C:0.06, G:0.37, T:0.21
Consensus pattern (16 bp):
GAATAGAGGCGTAATG
Found at i:80619130 original size:16 final size:16
Alignment explanation
Indices: 80619090--80619135 Score: 60
Period size: 15 Copynumber: 3.0 Consensus size: 16
80619080 ATAAAATATA
*
80619090 AATTAACATA-ATTAT
1 AATTAAAATATATTAT
*
80619105 TATT-AAATATATTAT
1 AATTAAAATATATTAT
80619120 AATTAAAATATATTAT
1 AATTAAAATATATTAT
80619136 TTTTCATATT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
14 4 0.15
15 11 0.42
16 11 0.42
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (16 bp):
AATTAAAATATATTAT
Found at i:80619146 original size:12 final size:11
Alignment explanation
Indices: 80619128--80619167 Score: 62
Period size: 12 Copynumber: 3.5 Consensus size: 11
80619118 ATAATTAAAA
80619128 TATATTATTTT
1 TATATTATTTT
80619139 TCATATTATTTT
1 T-ATATTATTTT
80619151 TGATATTATTTT
1 T-ATATTATTTT
80619163 TATAT
1 TATAT
80619168 CATGTATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
11 5 0.19
12 22 0.81
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.68
Consensus pattern (11 bp):
TATATTATTTT
Found at i:80622579 original size:12 final size:13
Alignment explanation
Indices: 80622546--80622580 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
80622536 TTCCATTAAC
*
80622546 CTCTGCTAAACAA
1 CTCTGCTAACCAA
80622559 CTCTGCTAACCAA
1 CTCTGCTAACCAA
80622572 CT-TGCTAAC
1 CTCTGCTAAC
80622581 TCTGTTACTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 7 0.33
13 14 0.67
ACGTcount: A:0.31, C:0.34, G:0.09, T:0.26
Consensus pattern (13 bp):
CTCTGCTAACCAA
Found at i:80627675 original size:12 final size:13
Alignment explanation
Indices: 80627644--80627676 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
80627634 ATTAACCTCG
80627644 GCTAACCAACTCT
1 GCTAACCAACTCT
*
80627657 ACTAACCAACT-T
1 GCTAACCAACTCT
80627669 GCTAACCA
1 GCTAACCA
80627677 TGTACCAACT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
12 8 0.44
13 10 0.56
ACGTcount: A:0.36, C:0.36, G:0.06, T:0.21
Consensus pattern (13 bp):
GCTAACCAACTCT
Found at i:80632391 original size:23 final size:23
Alignment explanation
Indices: 80632361--80632406 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
80632351 TACATGCCAT
80632361 AGGTTTGAATTTAAACTAATCTC
1 AGGTTTGAATTTAAACTAATCTC
80632384 AGGTTTGAATTTAAACTAATCTC
1 AGGTTTGAATTTAAACTAATCTC
80632407 CAAAATCTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (23 bp):
AGGTTTGAATTTAAACTAATCTC
Found at i:80633091 original size:56 final size:56
Alignment explanation
Indices: 80633000--80633222 Score: 297
Period size: 56 Copynumber: 4.0 Consensus size: 56
80632990 TCTTACATGT
* *** *
80633000 AATCACATATCGATGCCACTGTCCCAGACAG-GGTCTTACTCGCACACATATAAT-GG
1 AATCACATATCGATGCCAATGTATTAAAC-GTGGTCTTACTCGCACACATAT-ATCGG
* *
80633056 AATCACATATCGATGCCAATGTATTAAATGTGGTCTTACTCTCACACATATATCGG
1 AATCACATATCGATGCCAATGTATTAAACGTGGTCTTACTCGCACACATATATCGG
* ** *
80633112 AATCACATATCGATGCCAATGTATTAAACGTGGTCTTATTTTCACACATATATCGA
1 AATCACATATCGATGCCAATGTATTAAACGTGGTCTTACTCGCACACATATATCGG
* *
80633168 AATCACATACCGATACCAATGTATTAAACGTGGTCTTACTCGCACACATATATCG
1 AATCACATATCGATGCCAATGTATTAAACGTGGTCTTACTCGCACACATATATCG
80633223 ATGCCATGGT
Statistics
Matches: 149, Mismatches: 16, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
55 3 0.02
56 146 0.98
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (56 bp):
AATCACATATCGATGCCAATGTATTAAACGTGGTCTTACTCGCACACATATATCGG
Found at i:80638780 original size:43 final size:43
Alignment explanation
Indices: 80638678--80638781 Score: 129
Period size: 43 Copynumber: 2.4 Consensus size: 43
80638668 TTGCCAACGT
* * * ***
80638678 CCAGATGTGGTCTTACATGTAATCACATATTGATGCCACTGTC
1 CCAGACGTGGTCTTACACGTAATCACATAATGATGCCAAAATC
80638721 CCAGACAG-GGTCTTACACGTAATCACATAATGATGCCAAAATC
1 CCAGAC-GTGGTCTTACACGTAATCACATAATGATGCCAAAATC
*
80638764 CCAGACGTGGTATTACAC
1 CCAGACGTGGTCTTACAC
80638782 AAATACACAT
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
42 1 0.02
43 50 0.96
44 1 0.02
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (43 bp):
CCAGACGTGGTCTTACACGTAATCACATAATGATGCCAAAATC
Found at i:80638791 original size:43 final size:43
Alignment explanation
Indices: 80638698--80638792 Score: 104
Period size: 43 Copynumber: 2.2 Consensus size: 43
80638688 TCTTACATGT
* *** * *
80638698 AATCACATATTGATGCCACTGTCCCAGACAGGGTCTTACACGT
1 AATCACATAATGATGCCAAAATCCCAGACAGGGTATTACACGA
80638741 AATCACATAATGATGCCAAAATCCCAGAC-GTGGTATTACAC-A
1 AATCACATAATGATGCCAAAATCCCAGACAG-GGTATTACACGA
80638783 AATACACATA
1 AAT-CACATA
80638793 TCGGAATCCT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
42 4 0.09
43 40 0.91
ACGTcount: A:0.37, C:0.25, G:0.15, T:0.23
Consensus pattern (43 bp):
AATCACATAATGATGCCAAAATCCCAGACAGGGTATTACACGA
Found at i:80647237 original size:16 final size:16
Alignment explanation
Indices: 80647208--80647241 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
80647198 CTAATTTGTG
80647208 AAAAAAAATAAAAATA
1 AAAAAAAATAAAAATA
80647224 AAAATAAAAT-AAAATA
1 AAAA-AAAATAAAAATA
80647240 AA
1 AA
80647242 GAACACATAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (16 bp):
AAAAAAAATAAAAATA
Found at i:80647784 original size:24 final size:26
Alignment explanation
Indices: 80647721--80647792 Score: 94
Period size: 27 Copynumber: 2.8 Consensus size: 26
80647711 AAAAACGCCA
* *
80647721 CAAAAGGTCAAACAGTAGCGGCATTT
1 CAAAAGGTCAAGCAGTAGCGGCAGTT
80647747 GCAAAAGGTCAAGCAGTAGCGGC-GTT
1 -CAAAAGGTCAAGCAGTAGCGGCAGTT
*
80647773 -AAAAGGTTAAGCAGTAGCGG
1 CAAAAGGTCAAGCAGTAGCGG
80647793 GGTCAAGCAG
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
24 19 0.45
26 2 0.05
27 21 0.50
ACGTcount: A:0.36, C:0.17, G:0.31, T:0.17
Consensus pattern (26 bp):
CAAAAGGTCAAGCAGTAGCGGCAGTT
Found at i:80648083 original size:15 final size:15
Alignment explanation
Indices: 80648060--80648089 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
80648050 TACCCGAAAA
*
80648060 ACCTTAATTTTTTCC
1 ACCTAAATTTTTTCC
80648075 ACCTAAATTTTTTCC
1 ACCTAAATTTTTTCC
80648090 CCCAAAGCCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.27, G:0.00, T:0.50
Consensus pattern (15 bp):
ACCTAAATTTTTTCC
Found at i:80649637 original size:15 final size:15
Alignment explanation
Indices: 80649619--80649650 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
80649609 ACTTTAGTTT
80649619 TGCCATCCAGTTTTC
1 TGCCATCCAGTTTTC
*
80649634 TGCCATCTAGTTTTC
1 TGCCATCCAGTTTTC
80649649 TG
1 TG
80649651 TTATGTGTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.12, C:0.28, G:0.16, T:0.44
Consensus pattern (15 bp):
TGCCATCCAGTTTTC
Found at i:80652451 original size:51 final size:51
Alignment explanation
Indices: 80652375--80652476 Score: 159
Period size: 51 Copynumber: 2.0 Consensus size: 51
80652365 CACAACGATC
* **
80652375 ATGGAGAAGGTTTGATTTATATTGTCAAATGCCAACTTACCAAAGTCATTT
1 ATGGAGAAGGTTCGATGCATATTGTCAAATGCCAACTTACCAAAGTCATTT
* *
80652426 ATGGAGAAGGTTCGATGCATGTTGTCAAATGCCAACTTACCAAAGTTATTT
1 ATGGAGAAGGTTCGATGCATATTGTCAAATGCCAACTTACCAAAGTCATTT
80652477 TGGGCAAAAG
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.33
Consensus pattern (51 bp):
ATGGAGAAGGTTCGATGCATATTGTCAAATGCCAACTTACCAAAGTCATTT
Found at i:80659282 original size:27 final size:28
Alignment explanation
Indices: 80659249--80659313 Score: 105
Period size: 28 Copynumber: 2.4 Consensus size: 28
80659239 ATAAAAAATA
* *
80659249 ACCAAAATATTAT-AAATTTTTTTATTT
1 ACCAAAATATTATAAAAATTTTCTATTT
80659276 ACCAAAATATTATAAAAATTTTCTATTT
1 ACCAAAATATTATAAAAATTTTCTATTT
80659304 ACCAAAATAT
1 ACCAAAATAT
80659314 ACCAAAAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
27 13 0.37
28 22 0.63
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (28 bp):
ACCAAAATATTATAAAAATTTTCTATTT
Found at i:80659320 original size:28 final size:28
Alignment explanation
Indices: 80659249--80659321 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
80659239 ATAAAAAATA
* * *
80659249 ACCAAAATATTA-TAAATTTTTTTATTT
1 ACCAAAATATTACAAAAATTTTCTATTT
*
80659276 ACCAAAATATTATAAAAATTTTCTATTT
1 ACCAAAATATTACAAAAATTTTCTATTT
80659304 ACCAAAATA-TACCAAAAA
1 ACCAAAATATTA-CAAAAA
80659322 AACAAAAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
27 14 0.35
28 26 0.65
ACGTcount: A:0.49, C:0.12, G:0.00, T:0.38
Consensus pattern (28 bp):
ACCAAAATATTACAAAAATTTTCTATTT
Found at i:80659404 original size:27 final size:27
Alignment explanation
Indices: 80659374--80659425 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
80659364 GGCCAATCAC
80659374 ATTGGCGGCACCAAAGGTGCCAAAGAG
1 ATTGGCGGCACCAAAGGTGCCAAAGAG
*
80659401 ATTGGCGGCACCAATGGTGCCAAAG
1 ATTGGCGGCACCAAAGGTGCCAAAG
80659426 GACTAAAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.31, C:0.23, G:0.33, T:0.13
Consensus pattern (27 bp):
ATTGGCGGCACCAAAGGTGCCAAAGAG
Found at i:80659991 original size:19 final size:19
Alignment explanation
Indices: 80659967--80660028 Score: 90
Period size: 19 Copynumber: 3.3 Consensus size: 19
80659957 TCTAATTAAG
80659967 TAATAACTCTATTTTAATT
1 TAATAACTCTATTTTAATT
* * *
80659986 TAATAA-ACTATTCTCATT
1 TAATAACTCTATTTTAATT
80660004 TAATAACTCTATTTTAATT
1 TAATAACTCTATTTTAATT
80660023 TAATAA
1 TAATAA
80660029 AAATATATTT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
18 15 0.42
19 21 0.58
ACGTcount: A:0.40, C:0.11, G:0.00, T:0.48
Consensus pattern (19 bp):
TAATAACTCTATTTTAATT
Found at i:80660261 original size:37 final size:37
Alignment explanation
Indices: 80660219--80660289 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
80660209 ATTTTAGTGC
80660219 GCAATTCACTTTCAAAATTCAAAATAGTAAATTTGCA
1 GCAATTCACTTTCAAAATTCAAAATAGTAAATTTGCA
80660256 GCAATTCACTTTCAAAATTCAAAATAGTAAATTT
1 GCAATTCACTTTCAAAATTCAAAATAGTAAATTT
80660290 ACATATCAGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.44, C:0.15, G:0.07, T:0.34
Consensus pattern (37 bp):
GCAATTCACTTTCAAAATTCAAAATAGTAAATTTGCA
Found at i:80660460 original size:26 final size:26
Alignment explanation
Indices: 80660424--80660484 Score: 113
Period size: 26 Copynumber: 2.3 Consensus size: 26
80660414 CTGTTTTTTT
*
80660424 TATTTTGGTAAATAAAAAAATTATAA
1 TATTTTAGTAAATAAAAAAATTATAA
80660450 TATTTTAGTAAATAAAAAAATTATAA
1 TATTTTAGTAAATAAAAAAATTATAA
80660476 TATTTTAGT
1 TATTTTAGT
80660485 TATTTTTTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.43
Consensus pattern (26 bp):
TATTTTAGTAAATAAAAAAATTATAA
Found at i:80664409 original size:20 final size:19
Alignment explanation
Indices: 80664344--80664429 Score: 79
Period size: 19 Copynumber: 4.4 Consensus size: 19
80664334 AAAAAAATTC
*
80664344 AAATATTAAAAATTAG-AAAA
1 AAATA-TAAAAATT-GTAAGA
* *
80664364 AAATAGAAAAATAGTAAGA
1 AAATATAAAAATTGTAAGA
80664383 AAATATAAAAATTGTAAGA
1 AAATATAAAAATTGTAAGA
80664402 AAATTATACAAAA-TGTAA-A
1 AAA-TATA-AAAATTGTAAGA
80664421 GAAATATAA
1 -AAATATAA
80664430 TTTTCATAAA
Statistics
Matches: 57, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
18 2 0.04
19 34 0.60
20 17 0.30
21 4 0.07
ACGTcount: A:0.66, C:0.01, G:0.09, T:0.23
Consensus pattern (19 bp):
AAATATAAAAATTGTAAGA
Found at i:80676156 original size:4 final size:4
Alignment explanation
Indices: 80676149--80676177 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
80676139 AAAAAAATCA
80676149 ATAC ATAC ATAC ATAC ATAC ATAC ATAC A
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC A
80676178 GAGAGAGAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAC
Found at i:80676230 original size:6 final size:6
Alignment explanation
Indices: 80676219--80676245 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
80676209 AGTTTGAGTA
80676219 AGAGGG AGAGGG AGAGGG AGAGGG AGA
1 AGAGGG AGAGGG AGAGGG AGAGGG AGA
80676246 AAAATGGGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.37, C:0.00, G:0.63, T:0.00
Consensus pattern (6 bp):
AGAGGG
Found at i:80677227 original size:19 final size:18
Alignment explanation
Indices: 80677176--80677237 Score: 65
Period size: 18 Copynumber: 3.4 Consensus size: 18
80677166 AAATTTAAAA
*
80677176 ATTTA-AAAAATCAAAAT
1 ATTTATAAAAATCCAAAT
* *
80677193 AATTTTTACAAATCCAAAT
1 -ATTTATAAAAATCCAAAT
80677212 ATTTATAAAAATTCCAAA-
1 ATTTATAAAAA-TCCAAAT
80677230 ATTTATAA
1 ATTTATAA
80677238 TTCTTAAAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
18 21 0.57
19 16 0.43
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.35
Consensus pattern (18 bp):
ATTTATAAAAATCCAAAT
Found at i:80677426 original size:16 final size:16
Alignment explanation
Indices: 80677407--80677437 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
80677397 TTGAGAAAGT
80677407 TTTCAAATATATATGG
1 TTTCAAATATATATGG
*
80677423 TTTCAAATTTATATG
1 TTTCAAATATATATG
80677438 CTCTAAAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.06, G:0.10, T:0.48
Consensus pattern (16 bp):
TTTCAAATATATATGG
Found at i:80681025 original size:32 final size:32
Alignment explanation
Indices: 80680984--80681064 Score: 108
Period size: 32 Copynumber: 2.5 Consensus size: 32
80680974 TGCTAATCAT
*
80680984 TTCAATATCCAACAAGCGTAAAACATAATAAA
1 TTCAATATCCAACAAACGTAAAACATAATAAA
** **
80681016 TTCAATATCCAACAAATTTAAAACATAATATT
1 TTCAATATCCAACAAACGTAAAACATAATAAA
*
80681048 TTCAAAATCCAACAAAC
1 TTCAATATCCAACAAAC
80681065 TAATTGTAAT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 42 1.00
ACGTcount: A:0.52, C:0.20, G:0.02, T:0.26
Consensus pattern (32 bp):
TTCAATATCCAACAAACGTAAAACATAATAAA
Found at i:80682504 original size:27 final size:27
Alignment explanation
Indices: 80682439--80682561 Score: 156
Period size: 27 Copynumber: 4.5 Consensus size: 27
80682429 ATATTGAGTC
* *
80682439 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCAACATAGTC-AATT
** *
80682467 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAACATAGTCAATT
* * *
80682494 CGCACACTTAGTGCATCATATTCATTT
1 CGCACACTTAGTGCAACATAGTCAATT
*
80682521 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCAACATAGTCAATT
80682548 CGCACACTTAGTGC
1 CGCACACTTAGTGC
80682562 TGTACAATTT
Statistics
Matches: 82, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 62 0.76
28 20 0.24
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCAACATAGTCAATT
Found at i:80683063 original size:14 final size:14
Alignment explanation
Indices: 80683044--80683071 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
80683034 ATGGCATACT
80683044 TATGTATATATATA
1 TATGTATATATATA
80683058 TATGTATATATATA
1 TATGTATATATATA
80683072 CTTCGGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (14 bp):
TATGTATATATATA
Found at i:80699487 original size:18 final size:18
Alignment explanation
Indices: 80699452--80699496 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
80699442 ACAATAAGTG
*
80699452 ACGTTTTGAAAATTAATA
1 ACGTTTTGAAAATGAATA
80699470 ACGTTTTGAAAGA-GAATA
1 ACGTTTTGAAA-ATGAATA
80699488 AC-TTTTGAA
1 ACGTTTTGAA
80699497 TACAAATCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 7 0.28
18 17 0.68
19 1 0.04
ACGTcount: A:0.42, C:0.07, G:0.16, T:0.36
Consensus pattern (18 bp):
ACGTTTTGAAAATGAATA
Found at i:80705443 original size:36 final size:35
Alignment explanation
Indices: 80705390--80705510 Score: 90
Period size: 36 Copynumber: 3.5 Consensus size: 35
80705380 TAAAAAAATT
**
80705390 CTCGTTCAAGATTTTGGGATTGAGAAGACCTAATAA
1 CTCGTTCAAGAGCTTGGGATTGAGAAGACCT-ATAA
* *** *
80705426 CTCGTTCAAGAGCTTGGGA-AGACTCGA--TACAA
1 CTCGTTCAAGAGCTTGGGATTGAGAAGACCTATAA
* * * *
80705458 -T-GTTCAGGAGCTTGAGATTGAGAAAACCTGATAT
1 CTCGTTCAAGAGCTTGGGATTGAGAAGACCT-ATAA
80705492 CTCGTTCAAGAGCTTGGGA
1 CTCGTTCAAGAGCTTGGGA
80705511 ATGTTCGATA
Statistics
Matches: 61, Mismatches: 18, Indels: 12
0.67 0.20 0.13
Matches are distributed among these distances:
30 14 0.23
31 4 0.07
32 3 0.05
33 2 0.03
34 2 0.03
35 5 0.08
36 31 0.51
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.27
Consensus pattern (35 bp):
CTCGTTCAAGAGCTTGGGATTGAGAAGACCTATAA
Found at i:80707554 original size:18 final size:21
Alignment explanation
Indices: 80707522--80707565 Score: 58
Period size: 19 Copynumber: 2.2 Consensus size: 21
80707512 AAAAATACAA
*
80707522 ATTTTAGAATTTTTATAAA-T
1 ATTTTAGAATTTTTAAAAATT
80707542 ATTTT-GAA-TTTTAAAAATT
1 ATTTTAGAATTTTTAAAAATT
80707561 ATTTT
1 ATTTT
80707566 CAAAATTTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 8 0.36
19 9 0.41
20 5 0.23
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57
Consensus pattern (21 bp):
ATTTTAGAATTTTTAAAAATT
Found at i:80721740 original size:24 final size:24
Alignment explanation
Indices: 80721708--80721756 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
80721698 TATATATAAA
80721708 GGAATGTATCAAAGTTAGTCCATG
1 GGAATGTATCAAAGTTAGTCCATG
80721732 GGAATGTATCAAAGTTAGTCCATG
1 GGAATGTATCAAAGTTAGTCCATG
80721756 G
1 G
80721757 TATAGGCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.12, G:0.27, T:0.29
Consensus pattern (24 bp):
GGAATGTATCAAAGTTAGTCCATG
Found at i:80727448 original size:60 final size:60
Alignment explanation
Indices: 80727373--80727488 Score: 187
Period size: 60 Copynumber: 1.9 Consensus size: 60
80727363 CATCTTTAGT
* * *
80727373 ATTAGATAAAGTTCATGTTAAAAAGTTATGCATTGAGCTCTACTTAACGAATTAATCAGA
1 ATTAGAGAAAATTCATGTTAAAAAGTTATGCATTGAGCTATACTTAACGAATTAATCAGA
* *
80727433 ATTAGAGAAAATTCATGTTAACAAGTTATGCATTGAGTTATACTTAACGAATTAAT
1 ATTAGAGAAAATTCATGTTAAAAAGTTATGCATTGAGCTATACTTAACGAATTAAT
80727489 ATTGAATAAG
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
60 51 1.00
ACGTcount: A:0.41, C:0.10, G:0.15, T:0.34
Consensus pattern (60 bp):
ATTAGAGAAAATTCATGTTAAAAAGTTATGCATTGAGCTATACTTAACGAATTAATCAGA
Found at i:80733023 original size:70 final size:70
Alignment explanation
Indices: 80732864--80733024 Score: 277
Period size: 70 Copynumber: 2.3 Consensus size: 70
80732854 TCTTGTTAGG
*
80732864 TTACCAGTCCAGGCTAAACATTTAATGACACATTCAATTGCTTGGATAAGATAAAAATATACATG
1 TTACCAGTCCAGGCTAAACCTTTAATGACACATTCAATTGCTTGGATAAGATAAAAATATACATG
80732929 TAAGA
66 TAAGA
* * *
80732934 TTACTAGTCCAGGCTAAACCTTTAATGACACATTCAATTGCTTGGCTAAGTTAAAAATATACATG
1 TTACCAGTCCAGGCTAAACCTTTAATGACACATTCAATTGCTTGGATAAGATAAAAATATACATG
80732999 TAAGA
66 TAAGA
*
80733004 TTACCAGTCTAGGCTAAACCT
1 TTACCAGTCCAGGCTAAACCT
80733025 ATGTCACATG
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
70 85 1.00
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.30
Consensus pattern (70 bp):
TTACCAGTCCAGGCTAAACCTTTAATGACACATTCAATTGCTTGGATAAGATAAAAATATACATG
TAAGA
Found at i:80734023 original size:15 final size:15
Alignment explanation
Indices: 80734001--80734039 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
80733991 ATAATCAAAA
*
80734001 TTAATTAATTAAA-C
1 TTAATTAACTAAACC
80734015 TTCAATTAACTAAACC
1 TT-AATTAACTAAACC
80734031 TTAATTAAC
1 TTAATTAAC
80734040 ATCTTTCTCC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 2 0.09
15 17 0.77
16 3 0.14
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (15 bp):
TTAATTAACTAAACC
Found at i:80734421 original size:14 final size:15
Alignment explanation
Indices: 80734404--80734445 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
80734394 AAGAATTTTC
80734404 TTAAATGGCCAAAA-
1 TTAAATGGCCAAAAG
* *
80734418 TTAAAAGTCCTAAAAG
1 TTAAATGGCC-AAAAG
80734434 TTAAATGGCCAA
1 TTAAATGGCCAA
80734446 TTGAATACTC
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
14 8 0.36
15 6 0.27
16 8 0.36
ACGTcount: A:0.48, C:0.14, G:0.14, T:0.24
Consensus pattern (15 bp):
TTAAATGGCCAAAAG
Found at i:80743920 original size:21 final size:22
Alignment explanation
Indices: 80743891--80743934 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
80743881 ATAATTACTT
80743891 AAATCAATAAA-ATTTTAATTAA
1 AAATCAATAAATA-TTTAATTAA
*
80743913 AAAT-AATAATTATTTAATTAA
1 AAATCAATAAATATTTAATTAA
80743934 A
1 A
80743935 TAAATTATTG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (22 bp):
AAATCAATAAATATTTAATTAA
Found at i:80744725 original size:90 final size:90
Alignment explanation
Indices: 80744555--80744729 Score: 210
Period size: 90 Copynumber: 1.9 Consensus size: 90
80744545 ACAAAAGTTG
** * *
80744555 CAGGTTAATACGTTGCCAGATGGTTATGAATGTACAACATATTTGTAGATAAGAGCTGCCAGAAT
1 CAGGTTAATACACTGCCAGATGGTTATGAATGCACAACATATTTGTAGATAAAAGCTGCCAGAAT
* * * *
80744620 GTGGGTGGGTGAACCACCAGTGTTA
66 GTGGATAGATAAACCACCAGTGTTA
* * *
80744645 CAGGTTAATACACTGCTAGATGGTTGTGAATGCACAACATATTTGTAGATAAAAGTTGCCAGATA
1 CAGGTTAATACACTGCCAGATGGTTATGAATGCACAACATATTTGTAGATAAAAGCTGCCAG--A
*
80744710 AT-T-TATAGATAAACCACCAG
64 ATGTGGATAGATAAACCACCAG
80744730 AGTTGCAAAA
Statistics
Matches: 71, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
90 67 0.94
91 1 0.01
92 3 0.04
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28
Consensus pattern (90 bp):
CAGGTTAATACACTGCCAGATGGTTATGAATGCACAACATATTTGTAGATAAAAGCTGCCAGAAT
GTGGATAGATAAACCACCAGTGTTA
Found at i:80748396 original size:28 final size:28
Alignment explanation
Indices: 80748356--80748412 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
80748346 TTTAAAAGTA
*
80748356 TGCCAGGCTTTTCACAATCAACTACAAC
1 TGCCAAGCTTTTCACAATCAACTACAAC
80748384 TGCCAAGCTTTTCACAATCAACTACAAC
1 TGCCAAGCTTTTCACAATCAACTACAAC
80748412 T
1 T
80748413 TCTTTCTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.33, C:0.32, G:0.09, T:0.26
Consensus pattern (28 bp):
TGCCAAGCTTTTCACAATCAACTACAAC
Found at i:80749120 original size:15 final size:15
Alignment explanation
Indices: 80749100--80749136 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
80749090 TTAGGTAAAT
80749100 AATTTCTCAACAAAC
1 AATTTCTCAACAAAC
80749115 AATTTCTCAACAAAC
1 AATTTCTCAACAAAC
80749130 AATTTCT
1 AATTTCT
80749137 TTATCACGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.43, C:0.24, G:0.00, T:0.32
Consensus pattern (15 bp):
AATTTCTCAACAAAC
Found at i:80757348 original size:20 final size:22
Alignment explanation
Indices: 80757301--80757350 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
80757291 ATTATATTAT
*
80757301 AATAATATTTTAATTTGACATG
1 AATAATTTTTTAATTTGACATG
**
80757323 TTTAATTTTTTAATTT-A-ATG
1 AATAATTTTTTAATTTGACATG
80757343 AATAATTT
1 AATAATTT
80757351 CACTCGATTT
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
20 9 0.39
21 1 0.04
22 13 0.57
ACGTcount: A:0.38, C:0.02, G:0.06, T:0.54
Consensus pattern (22 bp):
AATAATTTTTTAATTTGACATG
Found at i:80774009 original size:19 final size:19
Alignment explanation
Indices: 80773985--80774022 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
80773975 AACAGAACTT
* *
80773985 TTATTTTTAGTTTTTAAAC
1 TTATTTTCAGATTTTAAAC
80774004 TTATTTTCAGATTTTAAAC
1 TTATTTTCAGATTTTAAAC
80774023 GCTTACCTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.29, C:0.08, G:0.05, T:0.58
Consensus pattern (19 bp):
TTATTTTCAGATTTTAAAC
Found at i:80774972 original size:25 final size:27
Alignment explanation
Indices: 80774944--80774993 Score: 68
Period size: 25 Copynumber: 1.9 Consensus size: 27
80774934 AAATTGCTGA
*
80774944 CTACAATATAAAT-AATT-ATATATAT
1 CTACAATAAAAATAAATTGATATATAT
*
80774969 CTACTATAAAAATAAATTGATATAT
1 CTACAATAAAAATAAATTGATATAT
80774994 TTATTCCTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 11 0.52
26 4 0.19
27 6 0.29
ACGTcount: A:0.52, C:0.08, G:0.02, T:0.38
Consensus pattern (27 bp):
CTACAATAAAAATAAATTGATATATAT
Found at i:80778067 original size:34 final size:34
Alignment explanation
Indices: 80778029--80778098 Score: 122
Period size: 34 Copynumber: 2.1 Consensus size: 34
80778019 TTTTTCCAGG
*
80778029 TCCTGCTGCATCTCAATTTATCTGGTACTTTTCT
1 TCCTGCTGAATCTCAATTTATCTGGTACTTTTCT
*
80778063 TCCTGCTGAATCTCAATTTCTCTGGTACTTTTCT
1 TCCTGCTGAATCTCAATTTATCTGGTACTTTTCT
80778097 TC
1 TC
80778099 TTCAGGTAGC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.14, C:0.27, G:0.11, T:0.47
Consensus pattern (34 bp):
TCCTGCTGAATCTCAATTTATCTGGTACTTTTCT
Found at i:80778451 original size:50 final size:50
Alignment explanation
Indices: 80778371--80778498 Score: 159
Period size: 50 Copynumber: 2.6 Consensus size: 50
80778361 AAGATTTGCT
* * *
80778371 ACTTCAATCTGCTTCACTGCAACTTCAGGGAGATAAGATCCACTATGGTAG
1 ACTTCAATCTGATCCACTGCAACTTCAGGGAAATAAGATCCACTATGGT-G
* * *
80778422 A-TTCAATCTGATCCACTGCAACTTTAGGGAAATAAGATTCGCTATGGTG
1 ACTTCAATCTGATCCACTGCAACTTCAGGGAAATAAGATCCACTATGGTG
* * *
80778471 ACTTCAATCTGACCCATTGGAACTTCAG
1 ACTTCAATCTGATCCACTGCAACTTCAG
80778499 AGGTATAGGA
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
49 2 0.03
50 63 0.95
51 1 0.02
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.29
Consensus pattern (50 bp):
ACTTCAATCTGATCCACTGCAACTTCAGGGAAATAAGATCCACTATGGTG
Found at i:80792272 original size:30 final size:28
Alignment explanation
Indices: 80792232--80792295 Score: 85
Period size: 30 Copynumber: 2.2 Consensus size: 28
80792222 TAGTAGAGGG
*
80792232 TAAAAAATAAA-ATAATGATATTAGAATAA
1 TAAAAAATAAATA-AATGATATAAGAA-AA
80792261 TAAATAAATAAATAAATGATATAAGAAAA
1 TAAA-AAATAAATAAATGATATAAGAAAA
80792290 TAAAAA
1 TAAAAA
80792296 GGTTATGCAA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
28 2 0.06
29 10 0.31
30 19 0.59
31 1 0.03
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.25
Consensus pattern (28 bp):
TAAAAAATAAATAAATGATATAAGAAAA
Found at i:80792463 original size:27 final size:27
Alignment explanation
Indices: 80792409--80792464 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
80792399 TAACATGAAC
*
80792409 GATAAAAATAGTAATAATAATAACAAA
1 GATAAAAATAGAAATAATAATAACAAA
80792436 GATAAAAATA-AAATAGCATAATAA-AAA
1 GATAAAAATAGAAATA--ATAATAACAAA
80792463 GA
1 GA
80792465 AATATAAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 4 0.15
27 15 0.58
28 7 0.27
ACGTcount: A:0.68, C:0.04, G:0.09, T:0.20
Consensus pattern (27 bp):
GATAAAAATAGAAATAATAATAACAAA
Found at i:80792472 original size:31 final size:32
Alignment explanation
Indices: 80792413--80792472 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 32
80792403 ATGAACGATA
*
80792413 AAAATAGTAATAATAATAACAAAGATAAAAAT
1 AAAATAGTAATAATAAAAACAAAGATAAAAAT
* * *
80792445 AAAATAG-CATAATAAAAAGAAATATAAA
1 AAAATAGTAATAATAAAAACAAAGATAAA
80792473 TAACATATAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
31 17 0.71
32 7 0.29
ACGTcount: A:0.70, C:0.03, G:0.07, T:0.20
Consensus pattern (32 bp):
AAAATAGTAATAATAAAAACAAAGATAAAAAT
Found at i:80793474 original size:43 final size:43
Alignment explanation
Indices: 80793424--80793509 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
80793414 TTTTATATGT
80793424 ATACGATGTAAAAGTATACCTTTTAGAACTGGAAATTTTTATA
1 ATACGATGTAAAAGTATACCTTTTAGAACTGGAAATTTTTATA
80793467 ATACGATGTAAAAGTATACCTTTTAGAACTGGAAATTTTTATA
1 ATACGATGTAAAAGTATACCTTTTAGAACTGGAAATTTTTATA
80793510 TCTCTTTGCT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.40, C:0.09, G:0.14, T:0.37
Consensus pattern (43 bp):
ATACGATGTAAAAGTATACCTTTTAGAACTGGAAATTTTTATA
Found at i:80808322 original size:8 final size:8
Alignment explanation
Indices: 80808311--80808362 Score: 52
Period size: 8 Copynumber: 6.6 Consensus size: 8
80808301 TAAAATGAAT
80808311 AAAATATA
1 AAAATATA
*
80808319 AAAATGTA
1 AAAATATA
*
80808327 AAAAGATA
1 AAAATATA
* *
80808335 TATATATA
1 AAAATATA
*
80808343 AAATTAT-
1 AAAATATA
80808350 AAAATATA
1 AAAATATA
80808358 AAAAT
1 AAAAT
80808363 TATATTTATG
Statistics
Matches: 33, Mismatches: 10, Indels: 2
0.73 0.22 0.04
Matches are distributed among these distances:
7 6 0.18
8 27 0.82
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (8 bp):
AAAATATA
Found at i:80808354 original size:31 final size:31
Alignment explanation
Indices: 80808309--80808403 Score: 86
Period size: 31 Copynumber: 3.0 Consensus size: 31
80808299 AATAAAATGA
80808309 ATAAAA-TATAAAAATGTAAAAAGATATATAT
1 ATAAAATTAT-AAAATGTAAAAAGATATATAT
* * *
80808340 ATAAAATTATAAAATATAAAAA-TTATATTT
1 ATAAAATTATAAAATGTAAAAAGATATATAT
* ** *
80808370 ATGAAAATTAAAAAAATGTGTATAGATATATAT
1 AT-AAAATT-ATAAAATGTAAAAAGATATATAT
80808403 A
1 A
80808404 AAGATACGCA
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
30 8 0.16
31 23 0.46
32 12 0.24
33 7 0.14
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (31 bp):
ATAAAATTATAAAATGTAAAAAGATATATAT
Found at i:80808650 original size:32 final size:32
Alignment explanation
Indices: 80808614--80808701 Score: 86
Period size: 32 Copynumber: 2.7 Consensus size: 32
80808604 TTAAATAGAT
* **
80808614 AAATAATAATAATAAAATAATAGTAGTAGTAA
1 AAATAATAATAATAAAAAAATAACAGTAGTAA
* * *
80808646 AAATAAAAAAAATAAAAAAATAACAGTATTAA
1 AAATAATAATAATAAAAAAATAACAGTAGTAA
* * *
80808678 ACATAATAATTATAGTAAAAATAA
1 AAATAATAATAATA-AAAAAATAA
80808702 TGATAACATT
Statistics
Matches: 44, Mismatches: 11, Indels: 1
0.79 0.20 0.02
Matches are distributed among these distances:
32 36 0.82
33 8 0.18
ACGTcount: A:0.67, C:0.02, G:0.06, T:0.25
Consensus pattern (32 bp):
AAATAATAATAATAAAAAAATAACAGTAGTAA
Found at i:80821618 original size:20 final size:21
Alignment explanation
Indices: 80821581--80821623 Score: 79
Period size: 20 Copynumber: 2.1 Consensus size: 21
80821571 AGAGTGGTGT
80821581 TGGAAGAATTGTTAAGAGAAG
1 TGGAAGAATTGTTAAGAGAAG
80821602 TGGAAGAATTG-TAAGAGAAG
1 TGGAAGAATTGTTAAGAGAAG
80821622 TG
1 TG
80821624 AAGGTAAGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.42, C:0.00, G:0.35, T:0.23
Consensus pattern (21 bp):
TGGAAGAATTGTTAAGAGAAG
Found at i:80823106 original size:12 final size:13
Alignment explanation
Indices: 80823083--80823107 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80823073 TTGTCTTAAG
80823083 TTTTATGTTTTTT
1 TTTTATGTTTTTT
80823096 TTTTATGTTTTT
1 TTTTATGTTTTT
80823108 CCATTGTTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.08, T:0.84
Consensus pattern (13 bp):
TTTTATGTTTTTT
Found at i:80823170 original size:23 final size:23
Alignment explanation
Indices: 80823121--80823171 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 23
80823111 TTGTTTCATA
*
80823121 AGTCTTTTCTTTTAGAAATTTTT
1 AGTCTTGTCTTTTAGAAATTTTT
* *
80823144 -GTCTTGTCTTTTATAGATTTTT
1 AGTCTTGTCTTTTAGAAATTTTT
80823166 AGTCTT
1 AGTCTT
80823172 ACTTTTGCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.18, C:0.10, G:0.12, T:0.61
Consensus pattern (23 bp):
AGTCTTGTCTTTTAGAAATTTTT
Found at i:80823176 original size:22 final size:22
Alignment explanation
Indices: 80823129--80823177 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
80823119 TAAGTCTTTT
*
80823129 CTTTTAGAAATTTTTGTCTTGT
1 CTTTTAGAAATTTTTGTCTTGA
* *
80823151 CTTTTATAGATTTTTAGTCTT-A
1 CTTTTAGAAATTTTT-GTCTTGA
80823173 CTTTT
1 CTTTT
80823178 GCAAGTGCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.18, C:0.10, G:0.10, T:0.61
Consensus pattern (22 bp):
CTTTTAGAAATTTTTGTCTTGA
Found at i:80824116 original size:12 final size:12
Alignment explanation
Indices: 80824099--80824123 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
80824089 TGAGAACAAG
80824099 AATCAAGTATTT
1 AATCAAGTATTT
80824111 AATCAAGTATTT
1 AATCAAGTATTT
80824123 A
1 A
80824124 TCATGTAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (12 bp):
AATCAAGTATTT
Found at i:80825396 original size:21 final size:21
Alignment explanation
Indices: 80825370--80825413 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
80825360 GTATTTTTCT
*
80825370 ACTCTGAACCTTGAATGTCAA
1 ACTCTGAACCTTGAATCTCAA
*
80825391 ACTCTGAACCTTGGATCTCAA
1 ACTCTGAACCTTGAATCTCAA
80825412 AC
1 AC
80825414 CTCAAACCTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.27
Consensus pattern (21 bp):
ACTCTGAACCTTGAATCTCAA
Found at i:80825419 original size:7 final size:7
Alignment explanation
Indices: 80825407--80825464 Score: 73
Period size: 7 Copynumber: 8.4 Consensus size: 7
80825397 AACCTTGGAT
80825407 CTCAAAC
1 CTCAAAC
80825414 CTCAAAC
1 CTCAAAC
80825421 CTCAAAC
1 CTCAAAC
80825428 CTCAAAC
1 CTCAAAC
*
80825435 CTTAAAC
1 CTCAAAC
*
80825442 ATCAAAC
1 CTCAAAC
*
80825449 C-CGAAC
1 CTCAAAC
*
80825455 CCCAAAC
1 CTCAAAC
80825462 CTC
1 CTC
80825465 GAATCCCAAG
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
6 5 0.12
7 38 0.88
ACGTcount: A:0.41, C:0.43, G:0.02, T:0.14
Consensus pattern (7 bp):
CTCAAAC
Found at i:80830176 original size:13 final size:13
Alignment explanation
Indices: 80830158--80830183 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
80830148 TATGTTTACC
80830158 TGCGGTTAATATA
1 TGCGGTTAATATA
80830171 TGCGGTTAATATA
1 TGCGGTTAATATA
80830184 AAAATAGAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.23, T:0.38
Consensus pattern (13 bp):
TGCGGTTAATATA
Found at i:80849918 original size:34 final size:35
Alignment explanation
Indices: 80849879--80849977 Score: 89
Period size: 35 Copynumber: 2.9 Consensus size: 35
80849869 AGGCTCAGAT
*
80849879 CAAAAAGAAAAAAAGAAAAATCAAAATCAAAGTAAA
1 CAAAAAGAAAAAAAGAAAAATCAAAATCAAA-AAAA
** **
80849915 -AAAAATCAAATCA-AAAAATCAAAAT-AAAAAAA
1 CAAAAAGAAAAAAAGAAAAATCAAAATCAAAAAAA
*
80849947 CAAAAAGAAGAAAGAAG-AAAATCAAATTCAA
1 CAAAAAGAA-AAA-AAGAAAAATCAAAATCAA
80849978 GATCAAAATG
Statistics
Matches: 48, Mismatches: 10, Indels: 10
0.71 0.15 0.15
Matches are distributed among these distances:
32 3 0.06
33 9 0.19
34 14 0.29
35 20 0.42
36 2 0.04
ACGTcount: A:0.74, C:0.09, G:0.07, T:0.10
Consensus pattern (35 bp):
CAAAAAGAAAAAAAGAAAAATCAAAATCAAAAAAA
Found at i:80849919 original size:15 final size:14
Alignment explanation
Indices: 80849901--80849946 Score: 58
Period size: 15 Copynumber: 3.2 Consensus size: 14
80849891 AAGAAAAATC
80849901 AAAATCAAAGTAAAA
1 AAAATCAAA-TAAAA
*
80849916 AAAATCAAAT-CAA
1 AAAATCAAATAAAA
80849929 AAAATCAAAATAAAA
1 AAAATC-AAATAAAA
80849944 AAA
1 AAA
80849947 CAAAAAGAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 8 0.30
14 5 0.19
15 14 0.52
ACGTcount: A:0.76, C:0.09, G:0.02, T:0.13
Consensus pattern (14 bp):
AAAATCAAATAAAA
Found at i:80852299 original size:87 final size:87
Alignment explanation
Indices: 80852198--80852561 Score: 586
Period size: 87 Copynumber: 4.2 Consensus size: 87
80852188 AGATCAGTGA
* * *
80852198 AGATCAGAAAACAAAGCCTTACCTCCATCGGTTGTAGTGGAGCTGGTTAAATATAGCGGATCTTG
1 AGATC-GAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTG
*
80852263 CCTTCCTGCGTTAACAGTGAAGC
65 CCTTCCTGCGTTAACAGCGAAGC
* * *
80852286 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGA-AACAGATCTTGT
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* *
80852350 CTTCCTGCATTAACAGCGAAGT
66 CTTCCTGCGTTAACAGCGAAGC
* * *
80852372 AGATCGAAAACGAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATATTAC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
80852437 CTTCCTGCGTTAACAGCGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
* *
80852459 AGATCGAAAACGAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGT
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
80852524 CTTCCTGCGTTAACAGCGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
80852546 AGATCGAAAACAAAGC
1 AGATCGAAAACAAAGC
80852562 AGATTTTGCT
Statistics
Matches: 254, Mismatches: 21, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
86 78 0.31
87 171 0.67
88 5 0.02
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (87 bp):
AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
CTTCCTGCGTTAACAGCGAAGC
Found at i:80852500 original size:173 final size:174
Alignment explanation
Indices: 80852198--80852561 Score: 604
Period size: 173 Copynumber: 2.1 Consensus size: 174
80852188 AGATCAGTGA
* * * *
80852198 AGATCAGAAAACAAAGCCTTACCTCCATCGGTTGTAGTGGAGCTGGTTAAATATAGCGGATCTTG
1 AGATC-GAAAACAAAGCCTTACCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATATTA
*
80852263 CCTTCCTGCGTTAACAGTGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGC
65 CCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGC
*
80852328 TGGTTAAAGA-AACAGATCTTGTCTTCCTGCATTAACAGCGAAGT
130 TGGTTAAAGATAACAGATCTTGTCTTCCTGCATTAACAGCGAAGC
* *
80852372 AGATCGAAAACGAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATATTAC
1 AGATCGAAAACAAAGCCTTACCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATATTAC
* *
80852437 CTTCCTGCGTTAACAGCGAAGCAGATCGAAAACGAAGCCTTGCCTCCATCGGTTGTAGTGGAGCT
66 CTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCT
* *
80852502 GGTTAAAGATAGCAGATCTTGTCTTCCTGCGTTAACAGCGAAGC
131 GGTTAAAGATAACAGATCTTGTCTTCCTGCATTAACAGCGAAGC
80852546 AGATCGAAAACAAAGC
1 AGATCGAAAACAAAGC
80852562 AGATTTTGCT
Statistics
Matches: 176, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
173 125 0.71
174 51 0.29
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (174 bp):
AGATCGAAAACAAAGCCTTACCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATATTAC
CTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCT
GGTTAAAGATAACAGATCTTGTCTTCCTGCATTAACAGCGAAGC
Found at i:80852655 original size:40 final size:42
Alignment explanation
Indices: 80852607--80852725 Score: 136
Period size: 40 Copynumber: 2.8 Consensus size: 42
80852597 GAAAACAACC
* * *
80852607 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCA-CATCA
1 AGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCAGAAACA
* *
80852648 AG-TCTTATCT-CCTCAAGCAATAGTGGAGCAGATGAAAGAAACC
1 AGATCTTATCTCCCT-AAGCAATAGTGGAGCAGAT--CAGAAACA
*
80852691 AGATCTTATCTCCCTAAGCAATAGTGGAGCGGATC
1 AGATCTTATCTCCCTAAGCAATAGTGGAGCAGATC
80852726 GAAGACGGCG
Statistics
Matches: 65, Mismatches: 7, Indels: 11
0.78 0.08 0.13
Matches are distributed among these distances:
39 3 0.05
40 26 0.40
41 2 0.03
42 1 0.02
43 4 0.06
44 26 0.40
45 3 0.05
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.24
Consensus pattern (42 bp):
AGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCAGAAACA
Found at i:80852710 original size:44 final size:43
Alignment explanation
Indices: 80852590--80852720 Score: 153
Period size: 44 Copynumber: 3.1 Consensus size: 43
80852580 TTAACAGTAA
* *
80852590 AGCAGAAGAAAACAACCAGATCTTATCTCCCTAAGCAGTAGTGG
1 AGCAGATGAAAA-AACCAGATCTTATCTCCCTAAGCAATAGTGG
* * * *
80852634 AGCAGAT--CACATCAAG-TCTTATCT-CCTCAAGCAATAGTGG
1 AGCAGATGAAAAAACCAGATCTTATCTCCCT-AAGCAATAGTGG
80852674 AGCAGATGAAAGAAACCAGATCTTATCTCCCTAAGCAATAGTGG
1 AGCAGATGAAA-AAACCAGATCTTATCTCCCTAAGCAATAGTGG
80852718 AGC
1 AGC
80852721 GGATCGAAGA
Statistics
Matches: 71, Mismatches: 10, Indels: 12
0.76 0.11 0.13
Matches are distributed among these distances:
39 3 0.04
40 26 0.37
41 4 0.06
42 2 0.03
43 4 0.06
44 29 0.41
45 3 0.04
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.21
Consensus pattern (43 bp):
AGCAGATGAAAAAACCAGATCTTATCTCCCTAAGCAATAGTGG
Done.