Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 264 of 313
Found at i:80852796 original size:87 final size:87
Alignment explanation
Indices: 80852697--80853124 Score: 712
Period size: 87 Copynumber: 4.9 Consensus size: 87
80852687 AACCAGATCT
80852697 TATCTCCCTAAGCAATAGTGGAGCGGATCGAAGACGGCGAATCTCATCTTCCCCAGGAGTAGGGA
1 TATCTCCCTAAGCAATAGTGGAGCGGATCGAAGACGGCGAATCTCATCTTCCCCAGGAGTAGGGA
80852762 AACAGATTTAAGCCATTAATCC
66 AACAGATTTAAGCCATTAATCC
* ** *
80852784 TATCTCCCTAAGCAATAGTGAAGCGGATCGAAGACGGAAAATCTCATCTTCCCCAAGAGTAGGGA
1 TATCTCCCTAAGCAATAGTGGAGCGGATCGAAGACGGCGAATCTCATCTTCCCCAGGAGTAGGGA
*
80852849 AACAAATTTAAGCCATTAATCC
66 AACAGATTTAAGCCATTAATCC
* *
80852871 TATCTCCCTAAGCAATAGTGGAGCGGATCGAAGACGGTGAATCCCATCTTCCCCAGGAGTAGGGA
1 TATCTCCCTAAGCAATAGTGGAGCGGATCGAAGACGGCGAATCTCATCTTCCCCAGGAGTAGGGA
*
80852936 AACGGATTTAAGCCATTAATCC
66 AACAGATTTAAGCCATTAATCC
* * * *
80852958 TATCTCTCTAAGAAATAGTGGAGCGGATCGAAGACGGCGAATATCATCCTCCCCAGGAGTAGGGA
1 TATCTCCCTAAGCAATAGTGGAGCGGATCGAAGACGGCGAATCTCATCTTCCCCAGGAGTAGGGA
80853023 AACAGATTTAAGCCATTAATCC
66 AACAGATTTAAGCCATTAATCC
* * *
80853045 TATCTCCCTAAGCAATAGTGGAGTGGATCGAAGATGGCGAATCTCATCTTCCCCAAGAGTAGGGA
1 TATCTCCCTAAGCAATAGTGGAGCGGATCGAAGACGGCGAATCTCATCTTCCCCAGGAGTAGGGA
*
80853110 AACAGATTCAAGCCA
66 AACAGATTTAAGCCA
80853125 CAAATACTAC
Statistics
Matches: 314, Mismatches: 27, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
87 314 1.00
ACGTcount: A:0.33, C:0.23, G:0.22, T:0.22
Consensus pattern (87 bp):
TATCTCCCTAAGCAATAGTGGAGCGGATCGAAGACGGCGAATCTCATCTTCCCCAGGAGTAGGGA
AACAGATTTAAGCCATTAATCC
Found at i:80852985 original size:43 final size:43
Alignment explanation
Indices: 80852854--80852985 Score: 106
Period size: 43 Copynumber: 3.0 Consensus size: 43
80852844 AGGGAAACAA
* *
80852854 ATTTAAGCCATTAATCCTATCTCCCTAAGCAATAGTGGAGCGG
1 ATTTAAGCCATTAATCCTATCTCTCTAAGAAATAGTGGAGCGG
** ** * * ** * * *
80852897 ATCGAAGACGGTGAATCCCATCT-TCCCCAGGAGTAG-GGAAACGG
1 ATTTAAG-CCATTAATCCTATCTCT-CTAAGAAATAGTGG-AGCGG
80852941 ATTTAAGCCATTAATCCTATCTCTCTAAGAAATAGTGGAGCGG
1 ATTTAAGCCATTAATCCTATCTCTCTAAGAAATAGTGGAGCGG
80852984 AT
1 AT
80852986 CGAAGACGGC
Statistics
Matches: 61, Mismatches: 23, Indels: 10
0.65 0.24 0.11
Matches are distributed among these distances:
43 31 0.51
44 30 0.49
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (43 bp):
ATTTAAGCCATTAATCCTATCTCTCTAAGAAATAGTGGAGCGG
Found at i:80869269 original size:35 final size:34
Alignment explanation
Indices: 80869195--80869271 Score: 86
Period size: 35 Copynumber: 2.2 Consensus size: 34
80869185 TTTTAAATTA
80869195 AATTTTTTATATTTTTATACTTTTTAAATAATTCT
1 AATTTTTTATATTTTTATACTTTTTAAAT-ATTCT
* * *
80869230 -ATTTTTTAATATTTTTATAATTTTTTGAAT-TTTT
1 AATTTTTT-ATATTTTTAT-ACTTTTTAAATATTCT
80869264 AATTTTTT
1 AATTTTTT
80869272 TTAAAAATTA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
34 10 0.28
35 17 0.47
36 9 0.25
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.68
Consensus pattern (34 bp):
AATTTTTTATATTTTTATACTTTTTAAATATTCT
Found at i:80890604 original size:16 final size:17
Alignment explanation
Indices: 80890580--80890612 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
80890570 TTATTAAGAT
80890580 TTTATAATATTAATTAA
1 TTTATAATATTAATTAA
*
80890597 TTTA-AATATTATTTAA
1 TTTATAATATTAATTAA
80890613 ATGTATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TTTATAATATTAATTAA
Found at i:80891404 original size:20 final size:20
Alignment explanation
Indices: 80891379--80891426 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
80891369 TTTCAAATCG
80891379 AGTTGAGTGAAATAAATTCA
1 AGTTGAGTGAAATAAATTCA
*
80891399 AGTTGAGTGAAATAAATTCG
1 AGTTGAGTGAAATAAATTCA
80891419 AGTTGAGT
1 AGTTGAGT
80891427 TGAATCGAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.40, C:0.04, G:0.25, T:0.31
Consensus pattern (20 bp):
AGTTGAGTGAAATAAATTCA
Found at i:80897228 original size:18 final size:18
Alignment explanation
Indices: 80897205--80897247 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
80897195 TGAATCGTGG
* *
80897205 ATCTTCTTCTTCTTCATC
1 ATCTTCTCCTCCTTCATC
*
80897223 ATCTTCACCTCCTTCATC
1 ATCTTCTCCTCCTTCATC
*
80897241 GTCTTCT
1 ATCTTCT
80897248 AGTTTAATTG
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.12, C:0.37, G:0.02, T:0.49
Consensus pattern (18 bp):
ATCTTCTCCTCCTTCATC
Found at i:80899099 original size:20 final size:21
Alignment explanation
Indices: 80899074--80899120 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 21
80899064 GAAAATATAA
80899074 ATTTTGAAATTTTT-ATAAA-T
1 ATTTTGAAATTTTTGA-AAATT
80899094 ATTTTG-AATTTTTGAAAATT
1 ATTTTGAAATTTTTGAAAATT
80899114 ATTTTGA
1 ATTTTGA
80899121 TTTTTTTTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
19 10 0.42
20 14 0.58
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (21 bp):
ATTTTGAAATTTTTGAAAATT
Found at i:80899105 original size:19 final size:20
Alignment explanation
Indices: 80899074--80899125 Score: 65
Period size: 19 Copynumber: 2.6 Consensus size: 20
80899064 GAAAATATAA
80899074 ATTTTGAAATTTTT-ATAAA-T
1 ATTTTG-AATTTTTGA-AAATT
80899094 ATTTTGAATTTTTGAAAATT
1 ATTTTGAATTTTTGAAAATT
80899114 ATTTTG-ATTTTT
1 ATTTTGAATTTTT
80899126 TTTTGTAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.60
Consensus pattern (20 bp):
ATTTTGAATTTTTGAAAATT
Found at i:80901020 original size:11 final size:11
Alignment explanation
Indices: 80901006--80901034 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
80900996 TTTTTCTGTA
80901006 TATTTTTAAAT
1 TATTTTTAAAT
80901017 TA-TTTTAAAT
1 TATTTTTAAAT
80901027 TATTTTTA
1 TATTTTTA
80901035 TTTTTTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (11 bp):
TATTTTTAAAT
Found at i:80901024 original size:10 final size:10
Alignment explanation
Indices: 80901009--80901062 Score: 55
Period size: 10 Copynumber: 5.9 Consensus size: 10
80900999 TTCTGTATAT
80901009 TTTTAAATTA
1 TTTTAAATTA
80901019 TTTTAAATTA
1 TTTTAAATTA
*
80901029 TTTT-TATT-
1 TTTTAAATTA
80901037 TTTTAAA--A
1 TTTTAAATTA
80901045 TTTTAAA-TA
1 TTTTAAATTA
*
80901054 GTTTAAATT
1 TTTTAAATT
80901063 GTTCACATTT
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
8 11 0.30
9 11 0.30
10 15 0.41
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (10 bp):
TTTTAAATTA
Found at i:80901964 original size:25 final size:25
Alignment explanation
Indices: 80901910--80901976 Score: 64
Period size: 26 Copynumber: 2.6 Consensus size: 25
80901900 CTCTCATAAC
* **
80901910 AAAAATTTTAAAAATAAAATATTTAT
1 AAAAATTATAAAAAT-TTATATTTAT
* *
80901936 AAAAATT-TCAAAATTTATATTTTT
1 AAAAATTATAAAAATTTATATTTAT
80901960 CAAAAATTATAAAAATT
1 -AAAAATTATAAAAATT
80901977 CTAAAAATAT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
24 7 0.21
25 13 0.38
26 14 0.41
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (25 bp):
AAAAATTATAAAAATTTATATTTAT
Found at i:80901974 original size:26 final size:25
Alignment explanation
Indices: 80901909--80901976 Score: 66
Period size: 25 Copynumber: 2.6 Consensus size: 25
80901899 TCTCTCATAA
*
80901909 CAAAAATTTTAAAAATAAAATATTTAT
1 CAAAAA-TTTAAAAAT-TAATATTTAT
* * *
80901936 -AAAAATTTCAAAATTTATATTTTT
1 CAAAAATTTAAAAATTAATATTTAT
80901960 CAAAAATTATAAAAATT
1 CAAAAATT-TAAAAATT
80901977 CTAAAAATAT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
24 7 0.21
25 15 0.44
26 12 0.35
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (25 bp):
CAAAAATTTAAAAATTAATATTTAT
Found at i:80904971 original size:21 final size:21
Alignment explanation
Indices: 80904947--80904990 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
80904937 AAACTAGCCA
* *
80904947 TGATGGTTTAGATGCTAGGGT
1 TGATGGGTTAGAGGCTAGGGT
*
80904968 TGATGGGTTAGAGGCTGGGGT
1 TGATGGGTTAGAGGCTAGGGT
80904989 TG
1 TG
80904991 CTAGGATGCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.16, C:0.05, G:0.45, T:0.34
Consensus pattern (21 bp):
TGATGGGTTAGAGGCTAGGGT
Found at i:80905682 original size:4 final size:4
Alignment explanation
Indices: 80905673--80905702 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
80905663 TAAGGACAAG
*
80905673 TAAA TAAA TAAA TACA TAAA TAAA TAAA TA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TA
80905703 TAGAGGAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (4 bp):
TAAA
Found at i:80905824 original size:19 final size:19
Alignment explanation
Indices: 80905783--80905824 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
80905773 AATTTGTAAT
*
80905783 AAAATAGATAATAATAGAT
1 AAAATAGATAATAATAGAA
*
80905802 AAAATA-ATAATAGTGAGAA
1 AAAATAGATAATAAT-AGAA
80905821 AAAA
1 AAAA
80905825 ACAAAAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.67, C:0.00, G:0.12, T:0.21
Consensus pattern (19 bp):
AAAATAGATAATAATAGAA
Found at i:80905875 original size:4 final size:4
Alignment explanation
Indices: 80905840--80905882 Score: 50
Period size: 4 Copynumber: 10.8 Consensus size: 4
80905830 AATAAAAAGG
* ** *
80905840 AAAT AAAT AGAT AAAT GTAT AAAT ATAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
80905883 AAGGGAAAAA
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (4 bp):
AAAT
Found at i:80911357 original size:25 final size:27
Alignment explanation
Indices: 80911258--80911369 Score: 89
Period size: 24 Copynumber: 4.4 Consensus size: 27
80911248 AATCATCTCA
80911258 CGGGAAGCTCAT-A-AGAGCC--TTAAT
1 CGGGAAGCTCATGAGAGAGCCAATT-AT
* *
80911282 CGGAAAGCTCAT-A-CGAGCCAA-TAT
1 CGGGAAGCTCATGAGAGAGCCAATTAT
* * **
80911306 CAGGAAACTCATGAGAGAGCCTTTTAT
1 CGGGAAGCTCATGAGAGAGCCAATTAT
80911333 CGGGAAGCTC-TG-GAGAGCCAATTAT
1 CGGGAAGCTCATGAGAGAGCCAATTAT
*
80911358 TGGGAAGCTCAT
1 CGGGAAGCTCAT
80911370 ATGAACCATA
Statistics
Matches: 69, Mismatches: 13, Indels: 10
0.75 0.14 0.11
Matches are distributed among these distances:
24 28 0.41
25 22 0.32
26 8 0.12
27 11 0.16
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.21
Consensus pattern (27 bp):
CGGGAAGCTCATGAGAGAGCCAATTAT
Found at i:80913364 original size:23 final size:22
Alignment explanation
Indices: 80913321--80913364 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
80913311 TTCTAAGTCG
80913321 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
80913344 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
80913365 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:80913473 original size:45 final size:45
Alignment explanation
Indices: 80913409--80913502 Score: 161
Period size: 45 Copynumber: 2.1 Consensus size: 45
80913399 AACAGGTACT
* *
80913409 CGGTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
*
80913454 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTT
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
80913499 CGGT
1 CGGT
80913503 TCACATAGTA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
Found at i:80913564 original size:51 final size:51
Alignment explanation
Indices: 80913504--80913680 Score: 184
Period size: 51 Copynumber: 3.5 Consensus size: 51
80913494 ATGTTCGGTT
* *
80913504 CACATAGTACTACACATGTGACCATTACCATCCGATATACGTAGTAGCCTA
1 CACATAGTACTACACACGTGACCATTACCATCCGATATACGTAGTAGCCTG
* * * * *
80913555 CACATAGTACTACACACGTGATCGA-AACTATTCG--GTACGTATAGTAGCCTG
1 CACATAGTACTACACACGTGA-CCATTACCATCCGATATACG--TAGTAGCCTG
* * * *
80913606 CACATAGTACTACACATGCGA-C-TTATCATTCCGATAAACGTAGTAGCCTG
1 CACATAGTACTACACACGTGACCATTACCA-TCCGATATACGTAGTAGCCTG
80913656 CACATAGTACTACACACGTGACCAT
1 CACATAGTACTACACACGTGACCAT
80913681 CACTTTCACT
Statistics
Matches: 99, Mismatches: 18, Indels: 17
0.74 0.13 0.13
Matches are distributed among these distances:
49 6 0.06
50 32 0.32
51 55 0.56
52 6 0.06
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.25
Consensus pattern (51 bp):
CACATAGTACTACACACGTGACCATTACCATCCGATATACGTAGTAGCCTG
Found at i:80917321 original size:21 final size:21
Alignment explanation
Indices: 80917297--80917347 Score: 57
Period size: 23 Copynumber: 2.3 Consensus size: 21
80917287 CACACGGGAC
* *
80917297 GCCTGATACGACATACAAGGT
1 GCCTGATACGACACACAAAGT
*
80917318 GCCTGAAATACGACACATAAAGT
1 GCCTG--ATACGACACACAAAGT
80917341 GCCTGAT
1 GCCTGAT
80917348 CAGAAAAGCC
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
21 7 0.28
23 18 0.72
ACGTcount: A:0.35, C:0.24, G:0.22, T:0.20
Consensus pattern (21 bp):
GCCTGATACGACACACAAAGT
Found at i:80917330 original size:23 final size:23
Alignment explanation
Indices: 80917302--80917346 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
80917292 GGGACGCCTG
* *
80917302 ATACGACATACAAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
*
80917325 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
80917347 TCAGAAAAGC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.40, C:0.22, G:0.20, T:0.18
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:80918359 original size:6 final size:6
Alignment explanation
Indices: 80918343--80918382 Score: 55
Period size: 6 Copynumber: 6.7 Consensus size: 6
80918333 AAAACCCTAG
*
80918343 TTTTTC CTTTTC TTTTTC TTTTTC -TTTTC TTCTTTC TTTT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TT-TTTC TTTT
80918383 CCCCTATTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
5 5 0.17
6 19 0.63
7 6 0.20
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTTTC
Found at i:80918366 original size:18 final size:18
Alignment explanation
Indices: 80918343--80918382 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 18
80918333 AAAACCCTAG
80918343 TTTTTCCTTTTCTT-TTTC
1 TTTTT-CTTTTCTTCTTTC
80918361 TTTTTCTTTTCTTCTTTC
1 TTTTTCTTTTCTTCTTTC
80918379 TTTT
1 TTTT
80918383 CCCCTATTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (18 bp):
TTTTTCTTTTCTTCTTTC
Found at i:80918428 original size:21 final size:21
Alignment explanation
Indices: 80918404--80918458 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 21
80918394 AATTGCTCTC
*
80918404 TGTTTCTTTTCTTCTTTGTTT
1 TGTTTCTTTTCTTCTTTCTTT
*
80918425 TGTTTC-TTTCTTTTTTCTTT
1 TGTTTCTTTTCTTCTTTCTTT
80918445 T-TTTCTTTTACTTC
1 TGTTTCTTTT-CTTC
80918459 ATTATATACA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 4 0.14
20 16 0.55
21 9 0.31
ACGTcount: A:0.02, C:0.16, G:0.05, T:0.76
Consensus pattern (21 bp):
TGTTTCTTTTCTTCTTTCTTT
Found at i:80918499 original size:9 final size:8
Alignment explanation
Indices: 80918485--80918548 Score: 55
Period size: 8 Copynumber: 7.9 Consensus size: 8
80918475 TTAGTTAACA
80918485 ATAATAAT
1 ATAATAAT
80918493 GATAATAAT
1 -ATAATAAT
80918502 ATAAT-AT
1 ATAATAAT
80918509 A-ATATAAT
1 ATA-ATAAT
80918517 ATAAT-AT
1 ATAATAAT
80918524 A-ATATAAT
1 ATA-ATAAT
80918532 ATAATATAAT
1 AT-A-ATAAT
80918542 ATAATAA
1 ATAATAA
80918549 ATATCTATTT
Statistics
Matches: 48, Mismatches: 0, Indels: 15
0.76 0.00 0.24
Matches are distributed among these distances:
6 2 0.04
7 10 0.21
8 17 0.35
9 10 0.21
10 9 0.19
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (8 bp):
ATAATAAT
Found at i:80918507 original size:5 final size:5
Alignment explanation
Indices: 80918497--80918552 Score: 105
Period size: 5 Copynumber: 11.4 Consensus size: 5
80918487 AATAATGATA
80918497 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
80918547 A-AAT AT
1 ATAAT AT
80918553 CTATTTACTT
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.08
5 46 0.92
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATAAT
Found at i:80924849 original size:25 final size:25
Alignment explanation
Indices: 80924821--80925016 Score: 96
Period size: 25 Copynumber: 7.8 Consensus size: 25
80924811 AATCTCTTTC
*
80924821 GAGCCATATAACGGGAAGCTCAAGT
1 GAGCCATATAACGGGAAGCTCAAGA
* * *
80924846 GAGCCATGTAATGGGAAGCTTATA-A
1 GAGCCATATAACGGGAAGCTCA-AGA
* * *
80924871 GAGCCATA-ATCGGGAAGCTCATGC
1 GAGCCATATAACGGGAAGCTCAAGA
* **
80924895 GAGCCA-ATATCGAAAAGCTCATGAGA
1 GAGCCATATAACGGGAAGCTCA--AGA
* * ** * *
80924921 GAGCCTTTTATTGAGAAGCTTAAGA
1 GAGCCATATAACGGGAAGCTCAAGA
* * *
80924946 GAGCTAT-TAATCGCGAAGCTCATGA
1 GAGCCATATAA-CGGGAAGCTCAAGA
* *
80924971 GAGCCATATAAAGGGATGCTCATA-A
1 GAGCCATATAACGGGAAGCTCA-AGA
* * *
80924996 GAGCTAAATAACGGGATGCTC
1 GAGCCATATAACGGGAAGCTC
80925017 TTGCGAGCTA
Statistics
Matches: 128, Mismatches: 34, Indels: 18
0.71 0.19 0.10
Matches are distributed among these distances:
23 1 0.01
24 29 0.23
25 77 0.60
26 10 0.08
27 11 0.09
ACGTcount: A:0.35, C:0.18, G:0.26, T:0.21
Consensus pattern (25 bp):
GAGCCATATAACGGGAAGCTCAAGA
Found at i:80924898 original size:24 final size:25
Alignment explanation
Indices: 80924820--80924917 Score: 85
Period size: 24 Copynumber: 4.0 Consensus size: 25
80924810 GAATCTCTTT
* *
80924820 CGAGCCATATAACGGGAAGCTCAAG
1 CGAGCCATATATCGGGAAGCTCATG
* * * *
80924845 TGAGCCATGTAAT-GGGAAGCTTATA
1 CGAGCCATAT-ATCGGGAAGCTCATG
*
80924870 AGAGCCATA-ATCGGGAAGCTCATG
1 CGAGCCATATATCGGGAAGCTCATG
**
80924894 CGAGCCA-ATATCGAAAAGCTCATG
1 CGAGCCATATATCGGGAAGCTCATG
80924918 AGAGAGCCTT
Statistics
Matches: 57, Mismatches: 13, Indels: 7
0.74 0.17 0.09
Matches are distributed among these distances:
23 3 0.05
24 29 0.51
25 24 0.42
26 1 0.02
ACGTcount: A:0.35, C:0.20, G:0.27, T:0.18
Consensus pattern (25 bp):
CGAGCCATATATCGGGAAGCTCATG
Found at i:80935815 original size:114 final size:114
Alignment explanation
Indices: 80935674--80935926 Score: 497
Period size: 114 Copynumber: 2.2 Consensus size: 114
80935664 TCTTACTAGG
*
80935674 AAAAACTAAAATTAATTCTAAAAAATAATAAATGAAATTAAAAAGATAAATTGATTTTTCCTATA
1 AAAAATTAAAATTAATTCTAAAAAATAATAAATGAAATTAAAAAGATAAATTGATTTTTCCTATA
80935739 ACAATCCAGATAAATCCTTGTAAAATACCATGTTTTTCCCTTTTACTGA
66 ACAATCCAGATAAATCCTTGTAAAATACCATGTTTTTCCCTTTTACTGA
80935788 AAAAATTAAAATTAATTCTAAAAAATAATAAATGAAATTAAAAAGATAAATTGATTTTTCCTATA
1 AAAAATTAAAATTAATTCTAAAAAATAATAAATGAAATTAAAAAGATAAATTGATTTTTCCTATA
80935853 ACAATCCAGATAAATCCTTGTAAAATACCATGTTTTTCCCTTTTACTGA
66 ACAATCCAGATAAATCCTTGTAAAATACCATGTTTTTCCCTTTTACTGA
80935902 AAAAATTAAAATTAATTCTAAAAAA
1 AAAAATTAAAATTAATTCTAAAAAA
80935927 GTGAAATAAT
Statistics
Matches: 138, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
114 138 1.00
ACGTcount: A:0.49, C:0.12, G:0.06, T:0.34
Consensus pattern (114 bp):
AAAAATTAAAATTAATTCTAAAAAATAATAAATGAAATTAAAAAGATAAATTGATTTTTCCTATA
ACAATCCAGATAAATCCTTGTAAAATACCATGTTTTTCCCTTTTACTGA
Found at i:80936001 original size:21 final size:21
Alignment explanation
Indices: 80935977--80936018 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
80935967 TCTATCAAAC
*
80935977 TTCAGGTTTTTCCTGTAAAAA
1 TTCAAGTTTTTCCTGTAAAAA
*
80935998 TTCAAGTTTTTCCTTTAAAAA
1 TTCAAGTTTTTCCTGTAAAAA
80936019 CCTAAGTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.31, C:0.14, G:0.10, T:0.45
Consensus pattern (21 bp):
TTCAAGTTTTTCCTGTAAAAA
Found at i:80936025 original size:21 final size:21
Alignment explanation
Indices: 80935973--80936019 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
80935963 TTTTTCTATC
*
80935973 AAACTTCAGGTTTTTCCTGTAA
1 AAAC-TCAAGTTTTTCCTGTAA
* *
80935995 AAATTCAAGTTTTTCCTTTAA
1 AAACTCAAGTTTTTCCTGTAA
80936016 AAAC
1 AAAC
80936020 CTAAGTAATT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 18 0.86
22 3 0.14
ACGTcount: A:0.34, C:0.17, G:0.09, T:0.40
Consensus pattern (21 bp):
AAACTCAAGTTTTTCCTGTAA
Found at i:80937940 original size:3 final size:3
Alignment explanation
Indices: 80937932--80937960 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
80937922 GCTATATTTG
80937932 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
80937961 TGCATGCTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:80949969 original size:20 final size:20
Alignment explanation
Indices: 80949932--80950033 Score: 75
Period size: 20 Copynumber: 5.1 Consensus size: 20
80949922 GTAATGTTAT
**
80949932 ACAGAGGCATCGTAGTGCAA
1 ACAGAGGCATAATAGTGCAA
* *
80949952 ACAGAGGCATAATTGTGCAG
1 ACAGAGGCATAATAGTGCAA
*
80949972 TCAGAGGCATTAA-AGTGCAA
1 ACAGAGGCA-TAATAGTGCAA
* **
80949992 ACAGAGACACTAA-AGTGTGA
1 ACAGAGGCA-TAATAGTGCAA
*
80950012 ACAGAGGCACCAA-AGTGCAA
1 ACAGAGGCA-TAATAGTGCAA
80950032 AC
1 AC
80950034 CCGTACAAGT
Statistics
Matches: 65, Mismatches: 16, Indels: 2
0.78 0.19 0.02
Matches are distributed among these distances:
20 62 0.95
21 3 0.05
ACGTcount: A:0.40, C:0.19, G:0.26, T:0.15
Consensus pattern (20 bp):
ACAGAGGCATAATAGTGCAA
Found at i:80950528 original size:24 final size:24
Alignment explanation
Indices: 80950496--80950545 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
80950486 TTGAATAAAC
80950496 TTAAATGAAAAGTCAAGAGTTATG
1 TTAAATGAAAAGTCAAGAGTTATG
* *
80950520 TTAAGTGAAAGGTCAAGAGTTATG
1 TTAAATGAAAAGTCAAGAGTTATG
80950544 TT
1 TT
80950546 TTTTTAATGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.40, C:0.04, G:0.24, T:0.32
Consensus pattern (24 bp):
TTAAATGAAAAGTCAAGAGTTATG
Found at i:80955874 original size:24 final size:24
Alignment explanation
Indices: 80955830--80955876 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
80955820 AAATAAATAT
*
80955830 AAATATACATATTTTAATATGTAA
1 AAATATACATATTATAATATGTAA
*
80955854 AAATATATATA-TATAAGTATGTA
1 AAATATACATATTATAA-TATGTA
80955877 TATAAAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.51, C:0.02, G:0.06, T:0.40
Consensus pattern (24 bp):
AAATATACATATTATAATATGTAA
Found at i:80955950 original size:32 final size:35
Alignment explanation
Indices: 80955894--80955957 Score: 89
Period size: 32 Copynumber: 1.9 Consensus size: 35
80955884 TTATGAAACA
*
80955894 TATAAAATATATAAAAGTATGTGTACATATATATT
1 TATAAAATATATAAAAGAATGTGTACATATATATT
*
80955929 TATAAAA-AT-TAAAA-AATGTGTACGTATAT
1 TATAAAATATATAAAAGAATGTGTACATATAT
80955958 GTATATATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
32 13 0.48
33 5 0.19
34 2 0.07
35 7 0.26
ACGTcount: A:0.50, C:0.03, G:0.09, T:0.38
Consensus pattern (35 bp):
TATAAAATATATAAAAGAATGTGTACATATATATT
Found at i:80956357 original size:36 final size:36
Alignment explanation
Indices: 80956317--80956392 Score: 84
Period size: 36 Copynumber: 2.1 Consensus size: 36
80956307 AAAACCATAG
*
80956317 AAAATATATAAAAGTATGT-GTATATATATAT-TTATA
1 AAAAT-TA-AAAAATATGTAGTATATATATATATTATA
* *
80956353 AAAATTAAAAAATGTGTACGTATATGTATATATTATA
1 AAAATTAAAAAATATGTA-GTATATATATATATTATA
80956390 AAA
1 AAA
80956393 CGTATGTATG
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
34 8 0.24
35 2 0.06
36 16 0.47
37 8 0.24
ACGTcount: A:0.51, C:0.01, G:0.09, T:0.38
Consensus pattern (36 bp):
AAAATTAAAAAATATGTAGTATATATATATATTATA
Found at i:80956528 original size:420 final size:407
Alignment explanation
Indices: 80955892--80956717 Score: 1463
Period size: 420 Copynumber: 2.0 Consensus size: 407
80955882 AATTATGAAA
*
80955892 CATATAAAATATATAAAAGTATGTGTACATATATATTTATAAAAATTAAAAAATGTGTACGTATA
1 CATAGAAAATATATAAAAGTATGTGTACATATATATTTATAAAAATTAAAAAATGTGTACGTATA
80955957 TGTATATATTATAAAACGTATGTATGTATACATGCATATATATAACAAAATTTGAAATTTAAAGG
66 TGTATATATTATAAAACGTATGTATGTATACATGCATATATATAACAAAATTTGAAATTTAAAGG
80956022 CATAAAAAAGTAAATAATAATGATACAAGATTAATGATGCCACATAATAATGTTAATAATATTAA
131 CATAAAAAAGTAAATAATAATGATACAAGATTAATGATGCCACATAATAATGTTAATAATATTAA
80956087 AATAATTAATTTAAAACTAAAATAACAAATAGAGGATTAAATAGCATCAATAATCAAAGACCAAT
196 AATAATTAATTTAAAACTAAAATAACAAATAGAGGATTAAATAGCATCAATAATCAAAGACCAAT
* *
80956152 GAATTTAAAACAAAGAGTATAAAATAAAAAAAATATAATGCCAAATAAAATGTAAACAAATTTGA
261 GAATTT------AA-A--AT---A-AAAAAAAATATAAGGCAAAATAAAATGTAAACAAATTTGA
80956217 AAATAATGAATTTGAAAATGAATAATAAGGGAAAAAGAGGTTTGAAATCAACAATATACAAATCA
313 AAATAATGAATTTGAAAATGAATAATAAGGGAAAAAGAGGTTTGAAATCAACAATATACAAATCA
*
80956282 ATAAATAAATTATATACAAATCAACAAAAC
378 ATAAATAAATTATACACAAATCAACAAAAC
*
80956312 CATAGAAAATATATAAAAGTATGTGTATATATATATTTATAAAAATTAAAAAATGTGTACGTATA
1 CATAGAAAATATATAAAAGTATGTGTACATATATATTTATAAAAATTAAAAAATGTGTACGTATA
80956377 TGTATATATTATAAAACGTATGTATGTATACATGCATATATATAACAAAATTTGAAATTTAAAGG
66 TGTATATATTATAAAACGTATGTATGTATACATGCATATATATAACAAAATTTGAAATTTAAAGG
80956442 CATAAAAAAGTAAATAATAATGATACAAGATTAATGATGCCACATAATAATGTTAATAATATTAA
131 CATAAAAAAGTAAATAATAATGATACAAGATTAATGATGCCACATAATAATGTTAATAATATTAA
*
80956507 AATAATTAATTTAAAACTAAAATAACAAATAGAGGATTAAATAGCATTAATAATCAAAGACCAAT
196 AATAATTAATTTAAAACTAAAATAACAAATAGAGGATTAAATAGCATCAATAATCAAAGACCAAT
* *
80956572 GAATTTAAAATAAAAAAATATATAAGGCAAAATAAAATGTGAACAAATTTGAAAATAATGAATTT
261 GAATTTAAAATAAAAAAAAATATAAGGCAAAATAAAATGTAAACAAATTTGAAAATAATGAATTT
80956637 GAAAATGAATAATAAGGGAAAAAGAGGTTTGAAATCAACAATATACAAATCAATAAATAAATTAT
326 GAAAATGAATAATAAGGGAAAAAGAGGTTTGAAATCAACAATATACAAATCAATAAATAAATTAT
80956702 ACACAAATCAACAAAA
391 ACACAAATCAACAAAA
80956718 TAAGAACAAG
Statistics
Matches: 398, Mismatches: 8, Indels: 13
0.95 0.02 0.03
Matches are distributed among these distances:
407 129 0.32
408 1 0.00
411 2 0.01
413 1 0.00
414 2 0.01
420 263 0.66
ACGTcount: A:0.54, C:0.07, G:0.10, T:0.29
Consensus pattern (407 bp):
CATAGAAAATATATAAAAGTATGTGTACATATATATTTATAAAAATTAAAAAATGTGTACGTATA
TGTATATATTATAAAACGTATGTATGTATACATGCATATATATAACAAAATTTGAAATTTAAAGG
CATAAAAAAGTAAATAATAATGATACAAGATTAATGATGCCACATAATAATGTTAATAATATTAA
AATAATTAATTTAAAACTAAAATAACAAATAGAGGATTAAATAGCATCAATAATCAAAGACCAAT
GAATTTAAAATAAAAAAAAATATAAGGCAAAATAAAATGTAAACAAATTTGAAAATAATGAATTT
GAAAATGAATAATAAGGGAAAAAGAGGTTTGAAATCAACAATATACAAATCAATAAATAAATTAT
ACACAAATCAACAAAAC
Found at i:80956963 original size:19 final size:19
Alignment explanation
Indices: 80956939--80956975 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
80956929 AATGATATAT
80956939 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
80956958 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
80956976 TGAAGATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:80956983 original size:17 final size:19
Alignment explanation
Indices: 80956942--80956983 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
80956932 GATATATTCT
*
80956942 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCG
80956961 AAGATTGCATATCAT-T-G
1 AAGATTGCATATCATATCG
80956978 AAGATT
1 AAGATT
80956984 ATGTTTCCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.27
18 1 0.05
19 15 0.68
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (19 bp):
AAGATTGCATATCATATCG
Found at i:80957281 original size:24 final size:24
Alignment explanation
Indices: 80957249--80957298 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
80957239 TTGAATAAAC
80957249 TTAAATGAAAAGTCAAGAGTTATG
1 TTAAATGAAAAGTCAAGAGTTATG
* *
80957273 TTAAGTGAAAGGTCAAGAGTTATG
1 TTAAATGAAAAGTCAAGAGTTATG
80957297 TT
1 TT
80957299 TTTTTAATGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.40, C:0.04, G:0.24, T:0.32
Consensus pattern (24 bp):
TTAAATGAAAAGTCAAGAGTTATG
Found at i:80980597 original size:30 final size:30
Alignment explanation
Indices: 80980563--80980625 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
80980553 GCAAGTGAAC
*
80980563 CATTTGTTTATTTACATGTATTAGTGTATA
1 CATTTGTTTATTTACATGCATTAGTGTATA
80980593 CATTTGTTTATTTACATGCATTAGTGTATA
1 CATTTGTTTATTTACATGCATTAGTGTATA
80980623 CAT
1 CAT
80980626 GTCTATAGCT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.27, C:0.10, G:0.13, T:0.51
Consensus pattern (30 bp):
CATTTGTTTATTTACATGCATTAGTGTATA
Found at i:80983885 original size:22 final size:22
Alignment explanation
Indices: 80983860--80983901 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
80983850 ACGAGTCTTT
80983860 CTCTTAGTCCCACTAAAAAGTC
1 CTCTTAGTCCCACTAAAAAGTC
*
80983882 CTCTTAGTCCTACTAAAAAG
1 CTCTTAGTCCCACTAAAAAG
80983902 AACGTAGTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.33, C:0.29, G:0.10, T:0.29
Consensus pattern (22 bp):
CTCTTAGTCCCACTAAAAAGTC
Found at i:80984335 original size:15 final size:15
Alignment explanation
Indices: 80984315--80984343 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
80984305 GAAAAAGGTG
80984315 CAGATCACCCACATA
1 CAGATCACCCACATA
80984330 CAGATCACCCACAT
1 CAGATCACCCACAT
80984344 GTTGGTTGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.41, G:0.07, T:0.14
Consensus pattern (15 bp):
CAGATCACCCACATA
Found at i:80986741 original size:41 final size:41
Alignment explanation
Indices: 80986696--80986801 Score: 194
Period size: 41 Copynumber: 2.6 Consensus size: 41
80986686 ACTGACTTTT
80986696 AGCCTGCTAGACTTATAGTCTGAAATGTTTCACCGGCATCA
1 AGCCTGCTAGACTTATAGTCTGAAATGTTTCACCGGCATCA
80986737 AGCCTGCTAGACTTATAGTCTGAAATGTTTCACCGGCATCA
1 AGCCTGCTAGACTTATAGTCTGAAATGTTTCACCGGCATCA
* *
80986778 AGCCTGCTAGACATAAAGTCTGAA
1 AGCCTGCTAGACTTATAGTCTGAA
80986802 TCATCTCACT
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 63 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (41 bp):
AGCCTGCTAGACTTATAGTCTGAAATGTTTCACCGGCATCA
Found at i:81000455 original size:32 final size:32
Alignment explanation
Indices: 81000419--81000495 Score: 91
Period size: 33 Copynumber: 2.4 Consensus size: 32
81000409 AACTTTTCCG
* ** *
81000419 GAAAATATTTTCAGAAAATCTGTCAAACAGCA
1 GAAAATATTTTCACAAAATCAATCAAACACCA
* *
81000451 GAAAATATTTTACACAGATTCAATCAAACACCA
1 GAAAATATTTT-CACAAAATCAATCAAACACCA
81000484 GAAAATATTTTC
1 GAAAATATTTTC
81000496 CTGTAAGTCA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
32 12 0.32
33 26 0.68
ACGTcount: A:0.47, C:0.17, G:0.09, T:0.27
Consensus pattern (32 bp):
GAAAATATTTTCACAAAATCAATCAAACACCA
Found at i:81000543 original size:34 final size:35
Alignment explanation
Indices: 81000485--81000551 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
81000475 CAAACACCAG
* * *
81000485 AAAATATTTTCCTGTAAGTCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
81000520 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
81000552 TATTTTACTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 16 0.57
35 12 0.43
ACGTcount: A:0.43, C:0.13, G:0.10, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:81005608 original size:30 final size:30
Alignment explanation
Indices: 81005533--81005610 Score: 86
Period size: 30 Copynumber: 2.5 Consensus size: 30
81005523 ACGATTCGGG
81005533 TTTAATTGATTTTTTAAAATTATTTTATAAGAA
1 TTTAATTGA-TTTTT--AATTATTTTATAAGAA
* * *
81005566 TTTAATTAATTTTTAATTATTTTATGAG-T
1 TTTAATTGATTTTTAATTATTTTATAAGAA
81005595 TCTTAATTGATTTTTA
1 T-TTAATTGATTTTTA
81005611 GAAATGATAA
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
29 1 0.03
30 26 0.65
32 5 0.12
33 8 0.20
ACGTcount: A:0.33, C:0.01, G:0.06, T:0.59
Consensus pattern (30 bp):
TTTAATTGATTTTTAATTATTTTATAAGAA
Found at i:81005670 original size:23 final size:23
Alignment explanation
Indices: 81005626--81005687 Score: 64
Period size: 22 Copynumber: 2.9 Consensus size: 23
81005616 GATAAAAAAT
*
81005626 TTATAAAAAACT-ATTTAA-AACA
1 TTATAAAAAA-TGAATTAAGAACA
81005648 TTATAAAAAATGAATTAAGAACA
1 TTATAAAAAATGAATTAAGAACA
81005671 --AT-AAAAATG-ATTAAGAA
1 TTATAAAAAATGAATTAAGAA
81005688 TTTATTAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
19 8 0.22
20 7 0.19
21 3 0.08
22 15 0.41
23 4 0.11
ACGTcount: A:0.61, C:0.05, G:0.06, T:0.27
Consensus pattern (23 bp):
TTATAAAAAATGAATTAAGAACA
Found at i:81006656 original size:26 final size:29
Alignment explanation
Indices: 81006613--81006676 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 29
81006603 ATCTAACTTG
*
81006613 TATAATTTTTCTACAATTTTCT-AT-TTT
1 TATAATTTTTCTACAATTTTATAATATTT
81006640 TATAA-TTTTCT-CAAATTTTATAATATTT
1 TATAATTTTTCTAC-AATTTTATAATATTT
81006668 TAATAATTT
1 T-ATAATTT
81006677 CTAAACTTGT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
25 1 0.03
26 13 0.42
27 7 0.23
28 4 0.13
29 4 0.13
30 2 0.06
ACGTcount: A:0.33, C:0.08, G:0.00, T:0.59
Consensus pattern (29 bp):
TATAATTTTTCTACAATTTTATAATATTT
Found at i:81009794 original size:30 final size:26
Alignment explanation
Indices: 81009725--81009789 Score: 130
Period size: 26 Copynumber: 2.5 Consensus size: 26
81009715 AGAAAACCAG
81009725 AAATAATTTTCTTACTTTCAGTAAGA
1 AAATAATTTTCTTACTTTCAGTAAGA
81009751 AAATAATTTTCTTACTTTCAGTAAGA
1 AAATAATTTTCTTACTTTCAGTAAGA
81009777 AAATAATTTTCTT
1 AAATAATTTTCTT
81009790 TCTTAATAGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.38, C:0.11, G:0.06, T:0.45
Consensus pattern (26 bp):
AAATAATTTTCTTACTTTCAGTAAGA
Found at i:81010243 original size:16 final size:17
Alignment explanation
Indices: 81010222--81010256 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
81010212 AATTAATTTA
*
81010222 AATTAATTAATTTT-TC
1 AATTAAATAATTTTCTC
81010238 AATTAAATAATTTTCTC
1 AATTAAATAATTTTCTC
81010255 AA
1 AA
81010257 CCCAATTCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.49
Consensus pattern (17 bp):
AATTAAATAATTTTCTC
Found at i:81013012 original size:18 final size:17
Alignment explanation
Indices: 81012979--81013017 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
81012969 TTGTATAAAT
81012979 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
81012997 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
81013014 TGTG
1 TGTG
81013018 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:81013270 original size:23 final size:23
Alignment explanation
Indices: 81013243--81013340 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
81013233 AGTGTTATTG
81013243 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
81013266 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
81013289 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
81013311 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
81013334 ATCAGTG
1 ATCAGTG
81013341 TGGCACTTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:81013309 original size:45 final size:45
Alignment explanation
Indices: 81013245--81013333 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
81013235 TGTTATTGAT
* *
81013245 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
81013290 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
81013334 ATCAGTGTGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Found at i:81021554 original size:18 final size:19
Alignment explanation
Indices: 81021519--81021560 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
81021509 GGTTTTCGTA
* *
81021519 TATTTTTTTTGTTCAAATT
1 TATTTTTCTGGTTCAAATT
81021538 TATTTTTCTGGTT-AAATT
1 TATTTTTCTGGTTCAAATT
81021556 T-TTTT
1 TATTTT
81021561 ATAAAATTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 4 0.19
18 6 0.29
19 11 0.52
ACGTcount: A:0.19, C:0.05, G:0.07, T:0.69
Consensus pattern (19 bp):
TATTTTTCTGGTTCAAATT
Found at i:81022338 original size:12 final size:12
Alignment explanation
Indices: 81022323--81022377 Score: 55
Period size: 11 Copynumber: 4.8 Consensus size: 12
81022313 AACAAATCCT
81022323 CTCTCAAATTTC
1 CTCTCAAATTTC
*
81022335 CTCTC-AATTTT
1 CTCTCAAATTTC
81022346 CTCTC-AATTTC
1 CTCTCAAATTTC
81022357 CT-TCCAAATTT-
1 CTCT-CAAATTTC
*
81022368 ATCTCAAATT
1 CTCTCAAATT
81022378 CATATTTAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
10 1 0.03
11 25 0.68
12 11 0.30
ACGTcount: A:0.25, C:0.29, G:0.00, T:0.45
Consensus pattern (12 bp):
CTCTCAAATTTC
Found at i:81022348 original size:23 final size:23
Alignment explanation
Indices: 81022322--81022377 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 23
81022312 AAACAAATCC
*
81022322 TCTCTCAAATTTCC-TCTCAATTT
1 TCTCTCAAATTTCCTTC-CAAATT
81022345 TCTCTC-AATTTCCTTCCAAATT
1 TCTCTCAAATTTCCTTCCAAATT
*
81022367 TATCTCAAATT
1 TCTCTCAAATT
81022378 CATATTTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
22 17 0.59
23 12 0.41
ACGTcount: A:0.25, C:0.29, G:0.00, T:0.46
Consensus pattern (23 bp):
TCTCTCAAATTTCCTTCCAAATT
Found at i:81022435 original size:51 final size:51
Alignment explanation
Indices: 81022336--81022435 Score: 119
Period size: 51 Copynumber: 2.0 Consensus size: 51
81022326 TCAAATTTCC
** * *
81022336 TCTCAATTTTCTCTCAATTTCCTTCCAAATTTATCTCAAATTCATATTTAA
1 TCTCAATTAGCTCTCAATTTCCTTCCAAATCTATCTCAAATCCATATTTAA
** * * *
81022387 TCTCAATTAGCTCTCAATTTCCTTTTAAATCTCTCTTAAATCCCTATTT
1 TCTCAATTAGCTCTCAATTTCCTTCCAAATCTATCTCAAATCCATATTT
81022436 TTTAAATAAT
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
51 40 1.00
ACGTcount: A:0.27, C:0.25, G:0.01, T:0.47
Consensus pattern (51 bp):
TCTCAATTAGCTCTCAATTTCCTTCCAAATCTATCTCAAATCCATATTTAA
Found at i:81025092 original size:51 final size:51
Alignment explanation
Indices: 81024920--81025263 Score: 342
Period size: 51 Copynumber: 6.8 Consensus size: 51
81024910 CTTTAATCAT
* * * * *
81024920 TCGATACTCGTAGTAGCCTTCACATAGTACTACACACTTGATCA-AGTTT-
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCATAATTTA
* * *
81024969 TACTG-TTCACGTAGTAGCCTTCACATAGTACTACACA-GTGATCA-AAGCTTT-
1 T-C-GATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCATAA--TTTA
* * ** * * * *
81025020 TCGGTACACATAGTAGCCTTCACTTAGTACTAAACATGTGGCCATCATTTA
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCATAATTTA
* *
81025071 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCA-AAGCTTC
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCATAA-TTTA
* * ** * *
81025122 TCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATTATTTA
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCATAATTTA
* * *
81025173 TCGATACATGTAGTAGCCTTCACACAATACTACACACGTGACCATTATTTA
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCATAATTTA
*
81025224 CCGATACACGTAGTAGCCTTCACACAGTACTACACACGTG
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTG
81025264 TTCATCGATA
Statistics
Matches: 246, Mismatches: 39, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
49 9 0.04
50 64 0.26
51 171 0.70
52 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (51 bp):
TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCATAATTTA
Found at i:81025151 original size:102 final size:102
Alignment explanation
Indices: 81024976--81025216 Score: 403
Period size: 102 Copynumber: 2.4 Consensus size: 102
81024966 TTTTACTGTT
* * *
81024976 CACGTAGTAGCCTTCACATAGTACTACACA-GTGATCAAAGCTTTTCGGTACACATAGTAGCCTT
1 CACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACACATAGTAGCCTT
*
81025040 CACTTAGTACTAAACATGTGGCCATCATTTATCGATA
66 CACTTAGTACTAAACATGTGACCATCATTTATCGATA
81025077 CACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACACATAGTAGCCTT
1 CACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACACATAGTAGCCTT
* *
81025142 CACTTAGTACTACACATGTGACCATTATTTATCGATA
66 CACTTAGTACTAAACATGTGACCATCATTTATCGATA
* *
81025179 CATGTAGTAGCCTTCACACAATACTACACACGTGACCA
1 CACGTAGTAGCCTTCACACAGTACTACACACGTGACCA
81025217 TTATTTACCG
Statistics
Matches: 131, Mismatches: 8, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
101 29 0.22
102 102 0.78
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (102 bp):
CACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACACATAGTAGCCTT
CACTTAGTACTAAACATGTGACCATCATTTATCGATA
Found at i:81025229 original size:153 final size:150
Alignment explanation
Indices: 81024921--81025263 Score: 420
Period size: 153 Copynumber: 2.3 Consensus size: 150
81024911 TTTAATCATT
* * * * * * * *
81024921 CGATACTCGTAGTAGCCTTCACATAGTACTACACACTTGATCAAGTTTTACTGTTCACGTAGTAG
1 CGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAGTTCTACGGTACACATAGTAG
* * ** *
81024986 CCTTCACATAGTACTACACAGTGATCAAAGCTTTTCGGTACACATAGTAGCCTTCACTTAGTACT
66 CCTTCACATAGTACTACACAGTGACCAAA-CTTTTCGATACACATAGTAGCCTTCACACAATACT
* * *
81025051 AAACATGTGGCCATCATTTAT
130 AAACACGTGACCATCATTTAC
81025072 CGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCT-CGGTACACATAGT
1 CGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACC-AAG-TTCTACGGTACACATAGT
* * **
81025136 AGCCTTCACTTAGTACTACACATGTGACCATTA-TTTATCGATACATGTAGTAGCCTTCACACAA
64 AGCCTTCACATAGTACTACACA-GTGACCA-AACTTT-TCGATACACATAGTAGCCTTCACACAA
* *
81025200 TACTACACACGTGACCATTATTTAC
126 TACTAAACACGTGACCATCATTTAC
81025225 CGATACACGTAGTAGCCTTCACACAGTACTACACACGTG
1 CGATACACGTAGTAGCCTTCACACAGTACTACACACGTG
81025264 TTCATCGATA
Statistics
Matches: 165, Mismatches: 22, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
151 38 0.23
152 37 0.22
153 89 0.54
154 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (150 bp):
CGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAGTTCTACGGTACACATAGTAG
CCTTCACATAGTACTACACAGTGACCAAACTTTTCGATACACATAGTAGCCTTCACACAATACTA
AACACGTGACCATCATTTAC
Found at i:81025232 original size:102 final size:102
Alignment explanation
Indices: 81024920--81025259 Score: 386
Period size: 102 Copynumber: 3.4 Consensus size: 102
81024910 CTTTAATCAT
* * * * *** *
81024920 TCGATACTCGTAGTAGCCTTCACATAGTACTACACACT-TGATCAAGTTTTA-CTG-TTCACGTA
1 TCGATACACATAGTAGCCTTCACTTAGTACTACACA-TGTGACCATCATTTATC-GATACACGTA
* * * *
81024982 GTAGCCTTCACATAGTACTACACA-GTGATCAAAGCTTT
64 GTAGCCTTCACACAATACTACACACGTGACCAAAGCTTC
* * *
81025020 TCGGTACACATAGTAGCCTTCACTTAGTACTAAACATGTGGCCATCATTTATCGATACACGTAGT
1 TCGATACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATACACGTAGT
*
81025085 AGCCTTCACACAGTACTACACACGTGACCAAAGCTTC
66 AGCCTTCACACAATACTACACACGTGACCAAAGCTTC
* * *
81025122 TCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATTATTTATCGATACATGTAGT
1 TCGATACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATACACGTAGT
* *
81025187 AGCCTTCACACAATACTACACACGTGACCATTA-TTTAC
66 AGCCTTCACACAATACTACACACGTGACCA-AAGCTT-C
* **
81025225 -CGATACACGTAGTAGCCTTCACACAGTACTACACA
1 TCGATACACATAGTAGCCTTCACTTAGTACTACACA
81025260 CGTGTTCATC
Statistics
Matches: 209, Mismatches: 25, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
99 1 0.00
100 40 0.19
101 31 0.15
102 135 0.65
103 2 0.01
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (102 bp):
TCGATACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATACACGTAGT
AGCCTTCACACAATACTACACACGTGACCAAAGCTTC
Found at i:81027923 original size:18 final size:18
Alignment explanation
Indices: 81027896--81027935 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
81027886 CAGGTGCATT
* *
81027896 TCCTAGCCCTTTTATGTA
1 TCCTAACCCTTATATGTA
81027914 TCCTAACCCTTATATGTA
1 TCCTAACCCTTATATGTA
81027932 TCCT
1 TCCT
81027936 TTTCCGAGTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.20, C:0.30, G:0.07, T:0.42
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:81028502 original size:22 final size:21
Alignment explanation
Indices: 81028490--81028801 Score: 164
Period size: 22 Copynumber: 14.0 Consensus size: 21
81028480 CCTTAAACTT
81028490 TTAAACTAAAAACCCTAACCC
1 TTAAACTAAAAACCCTAACCC
*
81028511 TT-AACTTAAAAACCCTAACCT
1 TTAAAC-TAAAAACCCTAACCC
* *
81028532 TTAAATTAAAAACCATAAACCC
1 TTAAACTAAAAACCCT-AACCC
* *
81028554 TTAAGCTAAAAACCGTAACCC
1 TTAAACTAAAAACCCTAACCC
*
81028575 -TAAACCCCAAAACTAAAAACCCTACACAC
1 TTAAA---C-----TAAAAACCCTA-ACCC
*
81028604 -TAAACTTAAAACCCTAAACCC
1 TTAAACTAAAAACCCT-AACCC
* *
81028625 TTAACCTAAAAACCCTAAACC
1 TTAAACTAAAAACCCTAACCC
* *
81028646 ATAAACCTAAAAATCCTAACCC
1 TTAAA-CTAAAAACCCTAACCC
* * *
81028668 TCAACCTAAAAATTGTAACCCTAAACC
1 TTAAACT--AAA----AACCCTAACCC
* ** * *
81028695 TCAAACCTAAAAACCCTAACCC
1 TTAAACTAAAAACCCT-AACCC
*
81028717 TTAACCTAAAAACCCTAAACCC
1 TTAAACTAAAAACCCT-AACCC
* *
81028739 CTAACCTAAAAACCCTAACCC
1 TTAAACTAAAAACCCTAACCC
* * *
81028760 TCAACCTAAAAACCTTAAACCC
1 TTAAACTAAAAACCCT-AACCC
81028782 TT-AACATAAAAACCCTAACC
1 TTAAAC-TAAAAACCCTAACC
81028802 TAAAGGCTTA
Statistics
Matches: 223, Mismatches: 44, Indels: 48
0.71 0.14 0.15
Matches are distributed among these distances:
20 6 0.03
21 81 0.36
22 98 0.44
23 4 0.02
25 2 0.01
26 1 0.00
27 14 0.06
28 10 0.04
29 7 0.03
ACGTcount: A:0.47, C:0.33, G:0.01, T:0.19
Consensus pattern (21 bp):
TTAAACTAAAAACCCTAACCC
Found at i:81028520 original size:21 final size:21
Alignment explanation
Indices: 81028490--81028801 Score: 239
Period size: 21 Copynumber: 14.0 Consensus size: 21
81028480 CCTTAAACTT
*
81028490 TTAAACTAAAAACCCTAACCC
1 TTAACCTAAAAACCCTAACCC
* *
81028511 TTAACTTAAAAACCCTAACCT
1 TTAACCTAAAAACCCTAACCC
** *
81028532 TTAAATTAAAAACCATAAACCC
1 TTAACCTAAAAACCCT-AACCC
* *
81028554 TTAAGCTAAAAACCGTAACCC
1 TTAACCTAAAAACCCTAACCC
* *
81028575 TAAACCCCAAAACTAAAAACCCTACACAC
1 TTAA---C----CTAAAAACCCTA-ACCC
* *
81028604 -TAAACTTAAAACCCTAAACCC
1 TTAACCTAAAAACCCT-AACCC
*
81028625 TTAACCTAAAAACCCTAAACCA
1 TTAACCTAAAAACCCT-AACCC
* *
81028647 TAAACCTAAAAATCCTAACCC
1 TTAACCTAAAAACCCTAACCC
* *
81028668 TCAACCTAAAAATTGTAACCCTAAACC
1 TTAACCT--AAA----AACCCTAACCC
*
81028695 TCAAACCTAAAAACCCTAACCC
1 T-TAACCTAAAAACCCTAACCC
81028717 TTAACCTAAAAACCCTAAACCC
1 TTAACCTAAAAACCCT-AACCC
*
81028739 CTAACCTAAAAACCCTAACCC
1 TTAACCTAAAAACCCTAACCC
* *
81028760 TCAACCTAAAAACCTTAAACCC
1 TTAACCTAAAAACCCT-AACCC
*
81028782 TTAACATAAAAACCCTAACC
1 TTAACCTAAAAACCCTAACC
81028802 TAAAGGCTTA
Statistics
Matches: 235, Mismatches: 36, Indels: 40
0.76 0.12 0.13
Matches are distributed among these distances:
21 99 0.42
22 99 0.42
23 3 0.01
26 3 0.01
27 10 0.04
28 18 0.08
29 3 0.01
ACGTcount: A:0.47, C:0.33, G:0.01, T:0.19
Consensus pattern (21 bp):
TTAACCTAAAAACCCTAACCC
Found at i:81028554 original size:43 final size:43
Alignment explanation
Indices: 81028490--81028801 Score: 270
Period size: 43 Copynumber: 7.0 Consensus size: 43
81028480 CCTTAAACTT
* * *
81028490 TTAAACTAAAAACCCT-AACCCTTAACTTAAAAACCCTAACCT
1 TTAACCTAAAAACCCTAAACCCTTAACCTAAAAACCCTAACCC
** * * *
81028532 TTAAATTAAAAACCATAAACCCTTAAGCTAAAAACCGTAACCC
1 TTAACCTAAAAACCCTAAACCCTTAACCTAAAAACCCTAACCC
* * * * *
81028575 TAAACCCCAAAACTAAAAACCCTACACAC-TAAACTTAAAACCCTAAACCC
1 TTAA---C----CTAAAAACCCTAAACCCTTAACCTAAAAACCCT-AACCC
* * *
81028625 TTAACCTAAAAACCCTAAACCATAAACCTAAAAATCCTAACCC
1 TTAACCTAAAAACCCTAAACCCTTAACCTAAAAACCCTAACCC
* *
81028668 TCAACCTAAAAATTGTAACCCTAAA-CCTCAAACCTAAAAACCCTAACCC
1 TTAACCT--AAA----AACCCTAAACCCT-TAACCTAAAAACCCTAACCC
*
81028717 TTAACCTAAAAACCCTAAACCCCTAACCTAAAAACCCTAACCC
1 TTAACCTAAAAACCCTAAACCCTTAACCTAAAAACCCTAACCC
* * *
81028760 TCAACCTAAAAACCTTAAACCCTTAACATAAAAACCCTAACC
1 TTAACCTAAAAACCCTAAACCCTTAACCTAAAAACCCTAACC
81028802 TAAAGGCTTA
Statistics
Matches: 219, Mismatches: 33, Indels: 35
0.76 0.11 0.12
Matches are distributed among these distances:
42 14 0.06
43 116 0.53
44 13 0.06
45 3 0.01
47 4 0.02
48 2 0.01
49 46 0.21
50 21 0.10
ACGTcount: A:0.47, C:0.33, G:0.01, T:0.19
Consensus pattern (43 bp):
TTAACCTAAAAACCCTAAACCCTTAACCTAAAAACCCTAACCC
Found at i:81028573 original size:28 final size:28
Alignment explanation
Indices: 81028542--81028595 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
81028532 TTAAATTAAA
** *
81028542 AACCATAAACCCTTAAGCTAAAAACCGT
1 AACCATAAACCCCAAAACTAAAAACCGT
*
81028570 AACCCTAAACCCCAAAACTAAAAACC
1 AACCATAAACCCCAAAACTAAAAACC
81028596 CTACACACTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.50, C:0.33, G:0.04, T:0.13
Consensus pattern (28 bp):
AACCATAAACCCCAAAACTAAAAACCGT
Found at i:81028625 original size:114 final size:111
Alignment explanation
Indices: 81028490--81028805 Score: 370
Period size: 114 Copynumber: 2.8 Consensus size: 111
81028480 CCTTAAACTT
* *
81028490 TTAAACTAAAAACCCT-AACCCTTAACTTAAAAACCCTAACCTTTAAATTAAAAACCATAAACCC
1 TTAAACTAAAAACCCTAAACCCTTAACCTAAAAACCCTAACC-TTAAACTAAAAACC-TAAACCC
81028554 TTAAGCTAAAAACCGTAACCCTAAACCCCAAAACTAAAAACCCTACACAC
64 TTAA-CTAAAAACCGTAACCCTAAACCCCAAAACTAAAAACCCTA-ACAC
* *
81028604 -TAAACTTAAAACCCTAAACCCTTAACCTAAAAACCCTAAACCATAAACCTAAAAATCCT-AACC
1 TTAAACTAAAAACCCTAAACCCTTAACCTAAAAACCCT-AACCTTAAA-CTAAAAA-CCTAAACC
* ** * * *
81028667 CTCAACCTAAAAATTGTAACCCTAAACCTCAAACCTAAAAACCCTAACCC
63 CTTAA-CTAAAAACCGTAACCCTAAACCCCAAAACTAAAAACCCTAACAC
* * * *
81028717 TTAACCTAAAAACCCTAAACCCCTAACCTAAAAACCCTAACCCTCAACCTAAAAACCTTAAACCC
1 TTAAACTAAAAACCCTAAACCCTTAACCTAAAAACCCTAA-CCTTAAACTAAAAACC-TAAACCC
*
81028782 TTAACATAAAAACCCTAA-CCTAAA
64 TTAAC-TAAAAACCGTAACCCTAAA
81028806 GGCTTAAAAA
Statistics
Matches: 172, Mismatches: 21, Indels: 19
0.81 0.10 0.09
Matches are distributed among these distances:
112 2 0.01
113 34 0.20
114 123 0.72
115 11 0.06
116 2 0.01
ACGTcount: A:0.47, C:0.33, G:0.01, T:0.19
Consensus pattern (111 bp):
TTAAACTAAAAACCCTAAACCCTTAACCTAAAAACCCTAACCTTAAACTAAAAACCTAAACCCTT
AACTAAAAACCGTAACCCTAAACCCCAAAACTAAAAACCCTAACAC
Found at i:81031952 original size:125 final size:124
Alignment explanation
Indices: 81031762--81032039 Score: 378
Period size: 125 Copynumber: 2.2 Consensus size: 124
81031752 TCTCTAAATT
* * *
81031762 GTCAACTCGAAATTATTTCTTTCAGGACCAACTGTAGCAAAAGCGCATCCACGAGGGTACGATTT
1 GTCAACTCGAAATAATTT-TTTCAGGACCAACTGTAGCAAAACCGCATCCACGAGGGCACGATTT
* ** * *
81031827 CAGAAATTCTTCTCAGATCGCATCCT-GCTTGAAGCGTTTTTTAAACTATTTGCTCAGAAAC
65 CACAAATTCTTCTCAGAAAGCATCCTAG-TAGAAGCG-ATTTTAAACTATTTGCTCAGAAAC
* * * * *
81031888 GTCAACTTGAAATAATTTTTTCAGGACCTACTGTAGCAAAACCGCCTCCACGTGGGCGCGATTTC
1 GTCAACTCGAAATAATTTTTTCAGGACCAACTGTAGCAAAACCGCATCCACGAGGGCACGATTTC
* *
81031953 ACAAATTCTTCTCATAAAGCATCCTAGTAGAAGCGATTTTATACTATTTGCTCAGAAAC
66 ACAAATTCTTCTCAGAAAGCATCCTAGTAGAAGCGATTTTAAACTATTTGCTCAGAAAC
*
81032012 GTCAACTCGAAATAATTTTTTCAAGACC
1 GTCAACTCGAAATAATTTTTTCAGGACC
81032040 CAAAAAATCC
Statistics
Matches: 134, Mismatches: 17, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
124 48 0.36
125 69 0.51
126 17 0.13
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (124 bp):
GTCAACTCGAAATAATTTTTTCAGGACCAACTGTAGCAAAACCGCATCCACGAGGGCACGATTTC
ACAAATTCTTCTCAGAAAGCATCCTAGTAGAAGCGATTTTAAACTATTTGCTCAGAAAC
Found at i:81032536 original size:16 final size:15
Alignment explanation
Indices: 81032514--81032556 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 15
81032504 AAATTTTACA
*
81032514 AATTAAAAAATAATT
1 AATTAAAAAATAAAT
81032529 ATATT-AAAAATAAAT
1 A-ATTAAAAAATAAAT
81032544 AATATAAAAAATA
1 AAT-TAAAAAATA
81032557 TTCTATCACT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
14 2 0.08
15 12 0.50
16 10 0.42
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
AATTAAAAAATAAAT
Found at i:81032539 original size:15 final size:15
Alignment explanation
Indices: 81032517--81032556 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
81032507 TTTTACAAAT
*
81032517 TAAAAAATAATTATA
1 TAAAAAATAATAATA
*
81032532 TTAAAAATAAATAATA
1 TAAAAAAT-AATAATA
81032548 TAAAAAATA
1 TAAAAAATA
81032557 TTCTATCACT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
TAAAAAATAATAATA
Found at i:81033624 original size:24 final size:24
Alignment explanation
Indices: 81033594--81033642 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
81033584 ATTTTATATC
*
81033594 TATAATTTTATATTTTACATTGCT
1 TATAATTTTATATTTTAAATTGCT
81033618 TATAATTTTATATTTTAAATTGCT
1 TATAATTTTATATTTTAAATTGCT
81033642 T
1 T
81033643 TTACATATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.59
Consensus pattern (24 bp):
TATAATTTTATATTTTAAATTGCT
Found at i:81034054 original size:18 final size:18
Alignment explanation
Indices: 81034016--81034051 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
81034006 TTATTATTTT
*
81034016 TAAAATTTACTATTAAAA
1 TAAAATTTAATATTAAAA
81034034 TAAAATTTAAATATTAAA
1 TAAAATTT-AATATTAAA
81034052 TAATTTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (18 bp):
TAAAATTTAATATTAAAA
Found at i:81039007 original size:7 final size:7
Alignment explanation
Indices: 81038995--81039020 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
81038985 CAATGAGACC
81038995 AGTTCCA
1 AGTTCCA
81039002 AGTTCCA
1 AGTTCCA
81039009 AGTTCCA
1 AGTTCCA
81039016 AGTTC
1 AGTTC
81039021 TAACCAAGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (7 bp):
AGTTCCA
Found at i:81040018 original size:9 final size:9
Alignment explanation
Indices: 81039996--81040051 Score: 53
Period size: 9 Copynumber: 5.9 Consensus size: 9
81039986 TACTATATCA
81039996 ATAAATAATT
1 ATAAA-AATT
81040006 -TAAAAATT
1 ATAAAAATT
81040014 ATAAAAA-T
1 ATAAAAATT
81040022 ATTAAAAATAT
1 A-TAAAAAT-T
81040033 ATAAAAAGTT
1 ATAAAAA-TT
81040043 CATAAAAAT
1 -ATAAAAAT
81040052 CCAAAAAAAG
Statistics
Matches: 40, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
8 6 0.15
9 16 0.40
10 8 0.20
11 10 0.25
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (9 bp):
ATAAAAATT
Found at i:81040025 original size:11 final size:10
Alignment explanation
Indices: 81040006--81040039 Score: 54
Period size: 9 Copynumber: 3.6 Consensus size: 10
81039996 ATAAATAATT
81040006 TAAAAAT-TA
1 TAAAAATATA
81040015 TAAAAATAT-
1 TAAAAATATA
81040024 TAAAAATATA
1 TAAAAATATA
81040034 TAAAAA
1 TAAAAA
81040040 GTTCATAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 16 0.70
10 7 0.30
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (10 bp):
TAAAAATATA
Found at i:81040035 original size:19 final size:17
Alignment explanation
Indices: 81039996--81040039 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 17
81039986 TACTATATCA
81039996 ATAAATAATTTAAAAATT
1 ATAAA-AATTTAAAAATT
81040014 ATAAAAATATTAAAAATAT
1 ATAAAAAT-TTAAAAAT-T
81040033 ATAAAAA
1 ATAAAAA
81040040 GTTCATAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.12
18 13 0.54
19 8 0.33
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
ATAAAAATTTAAAAATT
Found at i:81044066 original size:28 final size:28
Alignment explanation
Indices: 81044035--81044089 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
81044025 CATTTTAACT
*
81044035 TTTTAGAATT-TTTTGTTTTCATATAATG
1 TTTTAGAATTATTTTATTTT-ATATAATG
*
81044063 TTTTATAATTATTTTATTTTATATAAT
1 TTTTAGAATTATTTTATTTTATATAAT
81044090 TGATAAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 16 0.67
29 8 0.33
ACGTcount: A:0.29, C:0.02, G:0.05, T:0.64
Consensus pattern (28 bp):
TTTTAGAATTATTTTATTTTATATAATG
Found at i:81045190 original size:28 final size:28
Alignment explanation
Indices: 81045133--81045190 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
81045123 ATAAGCAATT
* *
81045133 AATTATGTTTTAAATATAAAAAAATTAA
1 AATTATGTTTAAAATATAAAAAAATGAA
*
81045161 AATTAT-TTTAAAAGTATAAAAATATGAA
1 AATTATGTTTAAAA-TATAAAAAAATGAA
81045189 AA
1 AA
81045191 AAAATATTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 6 0.23
28 20 0.77
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (28 bp):
AATTATGTTTAAAATATAAAAAAATGAA
Found at i:81049179 original size:22 final size:22
Alignment explanation
Indices: 81049149--81049205 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 22
81049139 TTAATTTTCA
*
81049149 TATACATATATATATACCTTAT
1 TATAAATATATATATACCTTAT
* * *
81049171 TATAAATATCTTTATATCTTAT
1 TATAAATATATATATACCTTAT
**
81049193 TATGTATATATAT
1 TATAAATATATAT
81049206 CTATATCTCT
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.39, C:0.09, G:0.02, T:0.51
Consensus pattern (22 bp):
TATAAATATATATATACCTTAT
Found at i:81049200 original size:26 final size:25
Alignment explanation
Indices: 81049167--81049216 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
81049157 TATATATACC
*
81049167 TTATTATAAATATCTTTATATCTTA
1 TTATTATAAATATCTATATATCTTA
* *
81049192 TTATGTATATATATCTATATCTCTT
1 TTAT-TATAAATATCTATATATCTT
81049217 TTTAAATATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 4 0.19
26 17 0.81
ACGTcount: A:0.32, C:0.10, G:0.02, T:0.56
Consensus pattern (25 bp):
TTATTATAAATATCTATATATCTTA
Found at i:81049471 original size:39 final size:41
Alignment explanation
Indices: 81049428--81049507 Score: 92
Period size: 39 Copynumber: 2.0 Consensus size: 41
81049418 TATCTCATGA
* * *
81049428 TTTTAAATATATATATACATATGT-TCTTCT-TATTTTTAT
1 TTTTAAATATATACACACATATATATCTTCTATATTTTTAT
** *
81049467 TTTTACGTATATACACACATATATATCTTTTATATTTTTAT
1 TTTTAAATATATACACACATATATATCTTCTATATTTTTAT
81049508 AGTTTTATAC
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
39 19 0.58
40 5 0.15
41 9 0.27
ACGTcount: A:0.31, C:0.10, G:0.03, T:0.56
Consensus pattern (41 bp):
TTTTAAATATATACACACATATATATCTTCTATATTTTTAT
Found at i:81050132 original size:111 final size:111
Alignment explanation
Indices: 81049887--81050125 Score: 478
Period size: 111 Copynumber: 2.2 Consensus size: 111
81049877 AGAAAAGATC
81049887 GTGTCCTAACTTACTGGGCATGATCCCTTTTCTAAACCTGAGATAATTAAATATCTTTTAAATAA
1 GTGTCCTAACTTACTGGGCATGATCCCTTTTCTAAACCTGAGATAATTAAATATCTTTTAAATAA
81049952 GTAAATTTTAGCATTTTTCATTCGCGTATCGGGAATTCGAGACATT
66 GTAAATTTTAGCATTTTTCATTCGCGTATCGGGAATTCGAGACATT
81049998 GTGTCCTAACTTACTGGGCATGATCCCTTTTCTAAACCTGAGATAATTAAATATCTTTTAAATAA
1 GTGTCCTAACTTACTGGGCATGATCCCTTTTCTAAACCTGAGATAATTAAATATCTTTTAAATAA
81050063 GTAAATTTTAGCATTTTTCATTCGCGTATCGGGAATTCGAGACATT
66 GTAAATTTTAGCATTTTTCATTCGCGTATCGGGAATTCGAGACATT
81050109 GTGTCCTAACTTACTGG
1 GTGTCCTAACTTACTGG
81050126 ATATGATTCT
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
111 128 1.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.38
Consensus pattern (111 bp):
GTGTCCTAACTTACTGGGCATGATCCCTTTTCTAAACCTGAGATAATTAAATATCTTTTAAATAA
GTAAATTTTAGCATTTTTCATTCGCGTATCGGGAATTCGAGACATT
Found at i:81051984 original size:16 final size:18
Alignment explanation
Indices: 81051958--81051992 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
81051948 TAAAATTGGG
81051958 TTGAGAAAATT-ATTTAA
1 TTGAGAAAATTAATTTAA
81051975 TTGA-AAAATTAATTTAA
1 TTGAGAAAATTAATTTAA
81051992 T
1 T
81051993 AAATAATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (18 bp):
TTGAGAAAATTAATTTAA
Found at i:81052620 original size:15 final size:15
Alignment explanation
Indices: 81052600--81052632 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
81052590 AGTATACTTG
*
81052600 TTATTTTAAATAATA
1 TTATTTTAAATAAAA
81052615 TTATTTTAAATAAAA
1 TTATTTTAAATAAAA
81052630 TTA
1 TTA
81052633 GATTATCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TTATTTTAAATAAAA
Found at i:81053190 original size:10 final size:9
Alignment explanation
Indices: 81053161--81053199 Score: 62
Period size: 9 Copynumber: 4.3 Consensus size: 9
81053151 TCAAAGTCTT
81053161 TAATTTTTA
1 TAATTTTTA
81053170 T-ATTTTTA
1 TAATTTTTA
81053178 TAATTTTTAA
1 TAATTTTT-A
81053188 TAATTTTTA
1 TAATTTTTA
81053197 TAA
1 TAA
81053200 GTTTATATCA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
8 8 0.29
9 11 0.39
10 9 0.32
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (9 bp):
TAATTTTTA
Found at i:81053244 original size:18 final size:18
Alignment explanation
Indices: 81053217--81053258 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
81053207 TCAACTCTCA
81053217 TTTT-TTTTAT-AATATT
1 TTTTATTTTATGAATATT
*
81053233 TTTATATTTTATGATTATT
1 TTT-TATTTTATGAATATT
81053252 TTTTATT
1 TTTTATT
81053259 AATTTTCTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 3 0.14
17 1 0.05
18 10 0.45
19 8 0.36
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.74
Consensus pattern (18 bp):
TTTTATTTTATGAATATT
Found at i:81058737 original size:16 final size:15
Alignment explanation
Indices: 81058715--81058750 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
81058705 TTTTTATATA
81058715 AATTTATAAATTTTT
1 AATTTATAAATTTTT
*
81058730 ATATTTATATATTTTT
1 A-ATTTATAAATTTTT
81058746 AATTT
1 AATTT
81058751 CAAAATAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (15 bp):
AATTTATAAATTTTT
Found at i:81060732 original size:19 final size:20
Alignment explanation
Indices: 81060685--81060732 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
81060675 GTTTTCGGAA
*
81060685 AATAATTTTTGGAAAATGACT
1 AATATTTTTTGGAAAA-GACT
* *
81060706 TATTTTTTTTGGAAAA-ACT
1 AATATTTTTTGGAAAAGACT
81060725 AATATTTT
1 AATATTTT
81060733 CTGATGTTTG
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
19 9 0.41
21 13 0.59
ACGTcount: A:0.38, C:0.04, G:0.10, T:0.48
Consensus pattern (20 bp):
AATATTTTTTGGAAAAGACT
Found at i:81065432 original size:36 final size:36
Alignment explanation
Indices: 81065389--81065459 Score: 142
Period size: 36 Copynumber: 2.0 Consensus size: 36
81065379 TTGGGTATTA
81065389 ATATTTTTTATATTTTGATAAATCTAAAACAAATAC
1 ATATTTTTTATATTTTGATAAATCTAAAACAAATAC
81065425 ATATTTTTTATATTTTGATAAATCTAAAACAAATA
1 ATATTTTTTATATTTTGATAAATCTAAAACAAATA
81065460 GTTGTCGACT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.45
Consensus pattern (36 bp):
ATATTTTTTATATTTTGATAAATCTAAAACAAATAC
Found at i:81067206 original size:10 final size:9
Alignment explanation
Indices: 81067184--81067231 Score: 53
Period size: 10 Copynumber: 5.2 Consensus size: 9
81067174 TTTTTATTAT
81067184 AAAT-AAAA
1 AAATAAAAA
81067192 AAATAAAATA
1 AAATAAAA-A
*
81067202 AAATAGAAA
1 AAATAAAAA
*
81067211 GAATAGAAAA
1 AAATA-AAAA
81067221 AAATAAAAA
1 AAATAAAAA
81067230 AA
1 AA
81067232 GTCCCGATTC
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
8 4 0.12
9 14 0.42
10 15 0.45
ACGTcount: A:0.81, C:0.00, G:0.06, T:0.12
Consensus pattern (9 bp):
AAATAAAAA
Found at i:81067223 original size:19 final size:18
Alignment explanation
Indices: 81067184--81067231 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 18
81067174 TTTTTATTAT
81067184 AAATAAAAAAATAAAATA
1 AAATAAAAAAATAAAATA
*
81067202 AAATAGAAAGAATAGAAA-A
1 AAATA-AAAAAATA-AAATA
81067221 AAATAAAAAAA
1 AAATAAAAAAA
81067232 GTCCCGATTC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
18 10 0.38
19 13 0.50
20 3 0.12
ACGTcount: A:0.81, C:0.00, G:0.06, T:0.12
Consensus pattern (18 bp):
AAATAAAAAAATAAAATA
Found at i:81068104 original size:44 final size:45
Alignment explanation
Indices: 81068056--81068387 Score: 224
Period size: 44 Copynumber: 7.6 Consensus size: 45
81068046 GCCATCTTTG
*
81068056 ATCTACTCCACTACTGCCT-ATGGAGATAAGATCTGTAATCTTCA
1 ATCTACTCCACTACTGCCTCAGGGAGATAAGATCTGTAATCTTCA
* * * *
81068100 ATCTATTCCACTATTG-CTCAGGGAGAT-AGA-AT-TACTGGCTTCA
1 ATCTACTCCACTACTGCCTCAGGGAGATAAGATCTGTAAT--CTTCA
* * * * * * ** **
81068143 ATGTACTCCACT-GTAACCTCAGGGAGGTAAAATCCGCCATCTTTG
1 ATCTACTCCACTACT-GCCTCAGGGAGATAAGATCTGTAATCTTCA
81068188 ATCTACTCCACTACTGCCT-AGGGAGATAAGATCTGTAATCTTCA
1 ATCTACTCCACTACTGCCTCAGGGAGATAAGATCTGTAATCTTCA
* * * *
81068232 ATCTATTCCACTATTG-CTCAGGGAGAT-AGA-AT-TACTGGCTTCA
1 ATCTACTCCACTACTGCCTCAGGGAGATAAGATCTGTAAT--CTTCA
* * * * * * * ** *
81068275 ATGTACTCTACT-GTAACCTCAAGGAGGTAAAATCTGCCATCTTCG
1 ATCTACTCCACTACT-GCCTCAGGGAGATAAGATCTGTAATCTTCA
*
81068320 ATCTACTACACTACTGCCT-AGGGAGATAAGATCTGTAATCTTCA
1 ATCTACTCCACTACTGCCTCAGGGAGATAAGATCTGTAATCTTCA
* *
81068364 ATCTATTCCACTGCTGCC-CAGGGA
1 ATCTACTCCACTACTGCCTCAGGGA
81068388 AGTAGAAATA
Statistics
Matches: 210, Mismatches: 59, Indels: 38
0.68 0.19 0.12
Matches are distributed among these distances:
41 6 0.03
42 4 0.02
43 39 0.19
44 119 0.57
45 37 0.18
46 3 0.01
47 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.30
Consensus pattern (45 bp):
ATCTACTCCACTACTGCCTCAGGGAGATAAGATCTGTAATCTTCA
Found at i:81068124 original size:132 final size:132
Alignment explanation
Indices: 81067925--81068893 Score: 1303
Period size: 132 Copynumber: 7.4 Consensus size: 132
81067915 GTTATTTCTG
* ** * * * ** *
81067925 TCTGCTCCATTACAACTTCAGGGAGACAAGA-CTTGT-ATATTCAATTTATTCCACTATTGCTCA
1 TCTGCTCCACTACTGCTT-AGGGAGATAAGATC-TGTAATCTTCAATCTATTCCACTGCTGCCCA
81067988 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCT
64 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCT
81068053 TTGA
129 TTGA
* * * ** *
81068057 TCTACTCCACTACTGCCTATGGAGATAAGATCTGTAATCTTCAATCTATTCCACTATTGCTCAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGG
81068122 GAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTT
66 GAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTT
81068187 GA
131 GA
* * ** *
81068189 TCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTATTGCTCAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGG
* * * *
81068254 GAGATAGAATTACTGGCTTCAATGTACTCTACTGTAACCTCAAGGAGGTAAAATCTGCCATCTTC
66 GAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTT
81068319 GA
131 GA
* * *
81068321 TCTACTACACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGG
* * * *
81068386 GA-AGTAGAAATACTGGCTTCAATGTACTCCA-TTTAA-CTAAAGAGAGGTAAAATCCGCCATCT
66 GAGA-TAGAATTACTGGCTTCAATGTACTCCACTGTAACCT-CAGGGAGGTAAAATCCGCCATCT
81068448 TTGA
129 TTGA
** *
81068452 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTAAAATCTTCAATCTAATCCACTGCTGCCCAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGG
* * ** *
81068517 GAGATAGAATTACTGGCTTCAATGTACTCCA-TTTAA-CTAAACAGAGGTAACATCCGCCATCTT
66 GAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCT-CAGGGAGGTAAAATCCGCCATCTT
81068580 TGA
130 TGA
* * *
81068583 TCTGCTCCACTACTGCTTAGGGAGACAAGATATGAAATCTTCAATCTATTCCACTGCTGCCCAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGG
* *
81068648 GA-AGTAGAATTACTGGCTTCAATGTACTCCA-TTTAA-CTACAGAGAGGTAAAATCCGCCATCT
66 GAGA-TAGAATTACTGGCTTCAATGTACTCCACTGTAACCT-CAGGGAGGTAAAATCCGCCATCT
81068710 TTGA
129 TTGA
* * *
81068714 TCTGCTCCACTACTGCTTAGGGAGACAAGATATGAAATCTTCAATCTATTCCACTGCTGCCCAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGG
* * * * *
81068779 GA-AGTAGAATTACTGGCTTCAATATACTCCACTGTAACCACAGGGAGGTAAAATTCACCATATT
66 GAGA-TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTT
81068843 TGA
130 TGA
* *
81068846 TCTGTTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCGATCTA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTA
81068894 CTTCACGCCA
Statistics
Matches: 775, Mismatches: 54, Indels: 16
0.92 0.06 0.02
Matches are distributed among these distances:
130 3 0.00
131 377 0.49
132 394 0.51
133 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (132 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGG
GAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTT
GA
Found at i:81068930 original size:44 final size:44
Alignment explanation
Indices: 81068872--81069136 Score: 228
Period size: 44 Copynumber: 6.0 Consensus size: 44
81068862 TTAGGGAGAT
81068872 AAGATCTG-TAATCTTCGATCTACTTCACGCCAATACATGAAGAC
1 AAGATCTGCT-ATCTTCGATCTACTTCACGCCAATACATGAAGAC
* * * *
81068916 AGGATCTGCTATCTTCGATCTACCTCATGCCAATATATGAAGAC
1 AAGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
* * * * * * * *** * *
81068960 AGGATATGCTTTCTTCAATCTACTCCACCACCAGTATGGGGAGAT
1 AAGATCTGCTATCTTCGATCTACTTCA-CGCCAATACATGAAGAC
* * *
81069005 AAGATCTGTTGACCCT-GATCTACTTCACGCCAATACATGAAGAC
1 AAGATCTGCT-ATCTTCGATCTACTTCACGCCAATACATGAAGAC
* * * * * ***
81069049 AAGATCTGCTTTCTTTGATCTACTTCGCCACCAGTATGGGAAGAC
1 AAGATCTGCTATCTTCGATCTACTTC-ACGCCAATACATGAAGAC
*
81069094 AAGATCTGCTATCTTCGATCTACTTCATGCCAATACATGAAGA
1 AAGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGA
81069137 GAGAATCTGT
Statistics
Matches: 166, Mismatches: 50, Indels: 10
0.73 0.22 0.04
Matches are distributed among these distances:
43 2 0.01
44 99 0.60
45 63 0.38
46 2 0.01
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.29
Consensus pattern (44 bp):
AAGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
Found at i:81069145 original size:89 final size:89
Alignment explanation
Indices: 81068910--81069145 Score: 296
Period size: 89 Copynumber: 2.7 Consensus size: 89
81068900 GCCAATACAT
* * * * *
81068910 GAAGACAGGATCTGCTATCTTCGATCTACCTCATGCCAATATATGAAGACAGGATATGCTTTCTT
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCATGCCAATACATGAAGACAGAATCTGCTTTCTT
81068975 CAATCTACTCCACCACCAGTATGG
66 CAATCTACTCCACCACCAGTATGG
* * * * * *
81068999 GGAGATAAGATCTGTTGACCCT-GATCTACTTCACGCCAATACATGAAGACA-AGATCTGCTTTC
1 GAAGACAAGATCTGCT-ATCTTCGATCTACTTCATGCCAATACATGAAGACAGA-ATCTGCTTTC
** * *
81069062 TTTGATCTACTTCGCCACCAGTATGG
64 TTCAATCTACTCCACCACCAGTATGG
*
81069088 GAAGACAAGATCTGCTATCTTCGATCTACTTCATGCCAATACATGAAGAGAGAATCTG
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCATGCCAATACATGAAGACAGAATCTG
81069146 TTTTTTTCCT
Statistics
Matches: 121, Mismatches: 22, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
88 3 0.02
89 114 0.94
90 4 0.03
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (89 bp):
GAAGACAAGATCTGCTATCTTCGATCTACTTCATGCCAATACATGAAGACAGAATCTGCTTTCTT
CAATCTACTCCACCACCAGTATGG
Found at i:81069188 original size:24 final size:24
Alignment explanation
Indices: 81069156--81069205 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
81069146 TTTTTTTCCT
81069156 AGCCTACTCTACTATTGCTCAGGG
1 AGCCTACTCTACTATTGCTCAGGG
*
81069180 AGCCTACTCTACTGTTGCTCAGGG
1 AGCCTACTCTACTATTGCTCAGGG
81069204 AG
1 AG
81069206 ATAAGGCTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.20, C:0.28, G:0.24, T:0.28
Consensus pattern (24 bp):
AGCCTACTCTACTATTGCTCAGGG
Found at i:81071514 original size:18 final size:18
Alignment explanation
Indices: 81071491--81071530 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 18
81071481 TAGTTTGGCA
81071491 GAAAAAATC-TAAAAGAAT
1 GAAAAAATCGT-AAAGAAT
81071509 GAAAAAATCGTAAAGAAT
1 GAAAAAATCGTAAAGAAT
81071527 GAAA
1 GAAA
81071531 GAACATTTGC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 20 0.95
19 1 0.05
ACGTcount: A:0.65, C:0.05, G:0.15, T:0.15
Consensus pattern (18 bp):
GAAAAAATCGTAAAGAAT
Found at i:81081524 original size:21 final size:21
Alignment explanation
Indices: 81081498--81081540 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
81081488 GGTTCGCTGT
*
81081498 ATTGGATTAGAGGTGTATTGG
1 ATTGGATTAGAGGTGTAATGG
81081519 ATTGGATTAGAGGTGTAATGG
1 ATTGGATTAGAGGTGTAATGG
81081540 A
1 A
81081541 ATAGAGGTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.28, C:0.00, G:0.37, T:0.35
Consensus pattern (21 bp):
ATTGGATTAGAGGTGTAATGG
Found at i:81081540 original size:16 final size:16
Alignment explanation
Indices: 81081521--81081553 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
81081511 TGTATTGGAT
*
81081521 TGGATTAGAGGTGTAA
1 TGGAATAGAGGTGTAA
81081537 TGGAATAGAGGTGTAA
1 TGGAATAGAGGTGTAA
81081553 T
1 T
81081554 AGCAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.36, T:0.30
Consensus pattern (16 bp):
TGGAATAGAGGTGTAA
Found at i:81084273 original size:18 final size:17
Alignment explanation
Indices: 81084226--81084275 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 17
81084216 GTTAATGATT
81084226 TAATATAAATATATATAA
1 TAATAT-AATATATATAA
81084244 TAATTATTTAATATATATAA
1 TAA-TA--TAATATATATAA
81084264 TCAATATAATAT
1 T-AATATAATAT
81084276 TGTTTTATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
18 9 0.32
19 2 0.07
20 14 0.50
21 3 0.11
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (17 bp):
TAATATAATATATATAA
Found at i:81084491 original size:42 final size:42
Alignment explanation
Indices: 81084432--81084515 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
81084422 GACCTTTAAA
81084432 TTTGGGTGAAAGACCTATCCTAGAACAAAATTTAATTTGACT
1 TTTGGGTGAAAGACCTATCCTAGAACAAAATTTAATTTGACT
81084474 TTTGGGTGAAAGACCTATCCTAGAACAAAATTTAATTTGACT
1 TTTGGGTGAAAGACCTATCCTAGAACAAAATTTAATTTGACT
81084516 CTAATAAAAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (42 bp):
TTTGGGTGAAAGACCTATCCTAGAACAAAATTTAATTTGACT
Found at i:81085321 original size:49 final size:50
Alignment explanation
Indices: 81085229--81085326 Score: 128
Period size: 49 Copynumber: 2.0 Consensus size: 50
81085219 GCATTATTTT
* *
81085229 ATGTTGTTTCAAGCTTTTTTTATTTTTAATTAATGTTTATAATTAATAAAA
1 ATGTTGTTTCAA-CTTTTTTTATTTTGAATTAATATTTATAATTAATAAAA
* *
81085280 ATGTTTTTTCAA-TTTTTTTATTTTGAATTCATCATTT-TAATTAATAA
1 ATGTTGTTTCAACTTTTTTTATTTTGAATTAAT-ATTTATAATTAATAA
81085327 CTCTTTTAGT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
49 28 0.67
50 3 0.07
51 11 0.26
ACGTcount: A:0.32, C:0.05, G:0.06, T:0.57
Consensus pattern (50 bp):
ATGTTGTTTCAACTTTTTTTATTTTGAATTAATATTTATAATTAATAAAA
Found at i:81088195 original size:15 final size:17
Alignment explanation
Indices: 81088175--81088206 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
81088165 TCTTTTAATA
81088175 ATATTT-TT-TATAAAT
1 ATATTTATTATATAAAT
81088190 ATATTTATTATATAAAT
1 ATATTTATTATATAAAT
81088207 TTTATACAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 2 0.13
17 7 0.47
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
ATATTTATTATATAAAT
Found at i:81090552 original size:17 final size:17
Alignment explanation
Indices: 81090525--81090558 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
81090515 AAATAAATAG
81090525 TTAAATAAAAAGTTAAAA
1 TTAAATAAAAAG-TAAAA
81090543 TTAAAT-AAAAGTAAAA
1 TTAAATAAAAAGTAAAA
81090559 AATGAAATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 5 0.31
18 6 0.38
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (17 bp):
TTAAATAAAAAGTAAAA
Found at i:81090561 original size:18 final size:18
Alignment explanation
Indices: 81090525--81090559 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
81090515 AAATAAATAG
*
81090525 TTAAATAAAAAGTTAAAA
1 TTAAATAAAAAGTAAAAA
81090543 TTAAAT-AAAAGTAAAAA
1 TTAAATAAAAAGTAAAAA
81090560 ATGAAATTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.26
Consensus pattern (18 bp):
TTAAATAAAAAGTAAAAA
Found at i:81092860 original size:15 final size:15
Alignment explanation
Indices: 81092840--81092870 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
81092830 CGAATCACCA
81092840 TCTAGAGATTGCTAG
1 TCTAGAGATTGCTAG
*
81092855 TCTAGAGATTGTTAG
1 TCTAGAGATTGCTAG
81092870 T
1 T
81092871 AAGACTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.10, G:0.26, T:0.39
Consensus pattern (15 bp):
TCTAGAGATTGCTAG
Found at i:81095276 original size:15 final size:16
Alignment explanation
Indices: 81095256--81095288 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
81095246 ATAAATAATA
81095256 AAATTTAATT-TATTC
1 AAATTTAATTCTATTC
81095271 AAATTTAATTCTATTC
1 AAATTTAATTCTATTC
81095287 AA
1 AA
81095289 TTAAATCCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.48
Consensus pattern (16 bp):
AAATTTAATTCTATTC
Found at i:81098491 original size:13 final size:13
Alignment explanation
Indices: 81098469--81098536 Score: 68
Period size: 13 Copynumber: 5.2 Consensus size: 13
81098459 CGCTTCTCCA
81098469 TTTG-TTATTTCT
1 TTTGTTTATTTCT
81098481 TTTGTTTATTTCT
1 TTTGTTTATTTCT
* * *
81098494 TTTCATTTGGTTTAT
1 TTT-GTTT-ATTTCT
*
81098509 TTTG-TTATTTAT
1 TTTGTTTATTTCT
81098521 TTTGTTTATTTCT
1 TTTGTTTATTTCT
81098534 TTT
1 TTT
81098537 CATTTTGTTT
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
12 13 0.28
13 23 0.50
14 3 0.07
15 7 0.15
ACGTcount: A:0.10, C:0.06, G:0.09, T:0.75
Consensus pattern (13 bp):
TTTGTTTATTTCT
Found at i:81098508 original size:19 final size:19
Alignment explanation
Indices: 81098476--81098550 Score: 98
Period size: 19 Copynumber: 3.9 Consensus size: 19
81098466 CCATTTGTTA
81098476 TTTC-TTTTGTTTATTTCT
1 TTTCATTTTGTTTATTTCT
* *
81098494 TTTCATTTGGTTTATTTTGT
1 TTTCATTTTGTTTA-TTTCT
*
81098514 TATTTATTTTGTTTATTTCT
1 T-TTCATTTTGTTTATTTCT
81098534 TTTCATTTTGTTTATTT
1 TTTCATTTTGTTTATTT
81098551 TGTCAATACT
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
18 4 0.08
19 23 0.48
20 10 0.21
21 11 0.23
ACGTcount: A:0.11, C:0.07, G:0.08, T:0.75
Consensus pattern (19 bp):
TTTCATTTTGTTTATTTCT
Found at i:81098513 original size:40 final size:40
Alignment explanation
Indices: 81098469--81098553 Score: 152
Period size: 40 Copynumber: 2.1 Consensus size: 40
81098459 CGCTTCTCCA
*
81098469 TTTGTTATTTCTTTTGTTTATTTCTTTTCATTTGGTTTAT
1 TTTGTTATTTATTTTGTTTATTTCTTTTCATTTGGTTTAT
*
81098509 TTTGTTATTTATTTTGTTTATTTCTTTTCATTTTGTTTAT
1 TTTGTTATTTATTTTGTTTATTTCTTTTCATTTGGTTTAT
81098549 TTTGT
1 TTTGT
81098554 CAATACTAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.11, C:0.06, G:0.09, T:0.74
Consensus pattern (40 bp):
TTTGTTATTTATTTTGTTTATTTCTTTTCATTTGGTTTAT
Found at i:81098528 original size:9 final size:9
Alignment explanation
Indices: 81098480--81098553 Score: 62
Period size: 9 Copynumber: 7.7 Consensus size: 9
81098470 TTGTTATTTC
81098480 TTTTGTTTA
1 TTTTGTTTA
81098489 TTTCT-TTTCA
1 TTT-TGTTT-A
*
81098499 TTTGGTTTA
1 TTTTGTTTA
81098508 TTTTGTTATTTA
1 TTTTG---TTTA
81098520 TTTTGTTTA
1 TTTTGTTTA
81098529 TTTCT-TTTCA
1 TTT-TGTTT-A
81098539 TTTTGTTTA
1 TTTTGTTTA
81098548 TTTTGT
1 TTTTGT
81098554 CAATACTAAA
Statistics
Matches: 54, Mismatches: 2, Indels: 18
0.73 0.03 0.24
Matches are distributed among these distances:
9 29 0.54
10 16 0.30
12 9 0.17
ACGTcount: A:0.11, C:0.05, G:0.09, T:0.74
Consensus pattern (9 bp):
TTTTGTTTA
Found at i:81101451 original size:41 final size:41
Alignment explanation
Indices: 81101389--81101516 Score: 193
Period size: 41 Copynumber: 3.1 Consensus size: 41
81101379 ATTCGCAGCA
* *
81101389 TTTATGGAAAAAACGCCGCTATTGCCTTACCTTTTGTGGCG
1 TTTATGGGAAAAACGCCGCTATTGCCTTACCTTTTGCGGCG
* *
81101430 TTTATGGGAAAAACGCTGCTATTGCCTTACCTTTTGCGGTG
1 TTTATGGGAAAAACGCCGCTATTGCCTTACCTTTTGCGGCG
* * *
81101471 TTTATGGGAAAAACACCGCTATTACCTTACATTTTGCGGCG
1 TTTATGGGAAAAACGCCGCTATTGCCTTACCTTTTGCGGCG
81101512 TTTAT
1 TTTAT
81101517 AGTAAAACGT
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 78 1.00
ACGTcount: A:0.23, C:0.20, G:0.21, T:0.36
Consensus pattern (41 bp):
TTTATGGGAAAAACGCCGCTATTGCCTTACCTTTTGCGGCG
Found at i:81101805 original size:15 final size:16
Alignment explanation
Indices: 81101770--81101808 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
81101760 TCATTAAGAA
*
81101770 AATATTTTATTTTTTT
1 AATATTTTATTCTTTT
81101786 AATATTTTA-TCTTTT
1 AATATTTTATTCTTTT
*
81101801 GATATTTT
1 AATATTTT
81101809 TAAATATCAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.69
Consensus pattern (16 bp):
AATATTTTATTCTTTT
Found at i:81102482 original size:61 final size:62
Alignment explanation
Indices: 81102414--81102538 Score: 225
Period size: 61 Copynumber: 2.0 Consensus size: 62
81102404 TTCGGCAAAC
*
81102414 TAACAAAGATGATGATAATTGCCTTTTTTCTTCATTT-TTTTTGTTTCATTGTTTATTTACT
1 TAACAAAGATGATGATAATTGCCTTTTTTCTTCATTTGTTTTTGTTTCATTATTTATTTACT
*
81102475 TAACAAAGATGATGATAATTGCCTTTTTTCTTCTTTTGTTTTTGTTTCATTATTTATTTACT
1 TAACAAAGATGATGATAATTGCCTTTTTTCTTCATTTGTTTTTGTTTCATTATTTATTTACT
81102537 TA
1 TA
81102539 TTACCCTTAC
Statistics
Matches: 61, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
61 36 0.59
62 25 0.41
ACGTcount: A:0.23, C:0.11, G:0.10, T:0.56
Consensus pattern (62 bp):
TAACAAAGATGATGATAATTGCCTTTTTTCTTCATTTGTTTTTGTTTCATTATTTATTTACT
Found at i:81105991 original size:3 final size:3
Alignment explanation
Indices: 81105971--81106025 Score: 71
Period size: 3 Copynumber: 19.3 Consensus size: 3
81105961 GTTTTTTAGT
*
81105971 TTA TT- TTA TTA ATA TTA TTA TTA TTA TTA TTA TTA TTA -TA TTA -TA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
81106016 TTA TAA TTA T
1 TTA TTA TTA T
81106026 CATCATACTT
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
2 6 0.13
3 39 0.87
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:81106117 original size:11 final size:11
Alignment explanation
Indices: 81106098--81106157 Score: 54
Period size: 11 Copynumber: 5.6 Consensus size: 11
81106088 TTTTTAAATA
*
81106098 TATACATATAT
1 TATATATATAT
81106109 TATATATATAT
1 TATATATATAT
81106120 TAT-TAT-TAT
1 TATATATATAT
* *
81106129 TAT-TTTATTT
1 TATATATATAT
*
81106139 TGTATATATAT
1 TATATATATAT
81106150 GTATATAT
1 -TATATAT
81106158 GTTTATATTT
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
9 8 0.21
10 7 0.18
11 18 0.46
12 6 0.15
ACGTcount: A:0.37, C:0.02, G:0.03, T:0.58
Consensus pattern (11 bp):
TATATATATAT
Found at i:81119179 original size:33 final size:33
Alignment explanation
Indices: 81119142--81119225 Score: 132
Period size: 33 Copynumber: 2.5 Consensus size: 33
81119132 TCAATTGTAT
* * *
81119142 AGACATCTTGCAATTACCGTCACACTCAGACTG
1 AGACATCTTGTAATTACCCTAACACTCAGACTG
81119175 AGACATCTTGTAATTACCCTAACACTCAGACTG
1 AGACATCTTGTAATTACCCTAACACTCAGACTG
*
81119208 ATACATCTTGTAATTACC
1 AGACATCTTGTAATTACC
81119226 TATTTCTCTT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 47 1.00
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.29
Consensus pattern (33 bp):
AGACATCTTGTAATTACCCTAACACTCAGACTG
Done.