Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 266 of 313
Found at i:81460947 original size:13 final size:13
Alignment explanation
Indices: 81460929--81461040 Score: 109
Period size: 13 Copynumber: 8.5 Consensus size: 13
81460919 TAAATTTTAG
*
81460929 TAAGTAATGTATT
1 TAAGTAATATATT
*
81460942 TAAGTAACATATT
1 TAAGTAATATATT
*
81460955 TAAGTAATAAATT
1 TAAGTAATATATT
** *
81460968 TAACCAA-ATTTT
1 TAAGTAATATATT
*
81460980 AGTAAGTAATGTATT
1 --TAAGTAATATATT
*
81460995 TAAGTAATTTATT
1 TAAGTAATATATT
81461008 TAAGTAATATATT
1 TAAGTAATATATT
*
81461021 CAAGTAATATATT
1 TAAGTAATATATT
*
81461034 AAAGTAA
1 TAAGTAA
81461041 ATTTTAGTAA
Statistics
Matches: 80, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
12 3 0.04
13 69 0.86
14 5 0.06
15 3 0.04
ACGTcount: A:0.46, C:0.04, G:0.10, T:0.41
Consensus pattern (13 bp):
TAAGTAATATATT
Found at i:81461067 original size:66 final size:66
Alignment explanation
Indices: 81460929--81461067 Score: 170
Period size: 66 Copynumber: 2.1 Consensus size: 66
81460919 TAAATTTTAG
* * ** *
81460929 TAAGTAATGTATTTAAGTAACATATTTAAGTAATAAATTTAACCAAATTTTAGTAAGTAATGTAT
1 TAAGTAATGTATTTAAGTAACATATTCAAGTAATAAATTAAACCAAATTTTAGTAAAAAATATAT
81460994 T
66 T
* * * ** *
81460995 TAAGTAATTTATTTAAGTAATATATTCAAGTAATATATTAAAGTAAATTTTAGTAAAAAATATGT
1 TAAGTAATGTATTTAAGTAACATATTCAAGTAATAAATTAAACCAAATTTTAGTAAAAAATATAT
81461060 T
66 T
*
81461061 TTAGTAA
1 TAAGTAA
81461068 GTAATGTAAG
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
66 61 1.00
ACGTcount: A:0.45, C:0.03, G:0.10, T:0.42
Consensus pattern (66 bp):
TAAGTAATGTATTTAAGTAACATATTCAAGTAATAAATTAAACCAAATTTTAGTAAAAAATATAT
T
Found at i:81461223 original size:20 final size:19
Alignment explanation
Indices: 81461191--81461242 Score: 63
Period size: 18 Copynumber: 2.8 Consensus size: 19
81461181 TTGTAAAAAT
81461191 ATATTAAAA-ATATAATAA
1 ATATTAAAATATATAATAA
*
81461209 ATATTGAAAATATATATTAA
1 ATATT-AAAATATATAATAA
*
81461229 CT-TTAAAATATATA
1 ATATTAAAATATATA
81461243 TATTAATAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 15 0.50
19 6 0.20
20 9 0.30
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (19 bp):
ATATTAAAATATATAATAA
Found at i:81462026 original size:15 final size:15
Alignment explanation
Indices: 81462006--81462037 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
81461996 GTGATAACAG
*
81462006 TAAATTAGTACCAAA
1 TAAATTACTACCAAA
81462021 TAAATTACTACCAAA
1 TAAATTACTACCAAA
81462036 TA
1 TA
81462038 CTTCAACCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.53, C:0.16, G:0.03, T:0.28
Consensus pattern (15 bp):
TAAATTACTACCAAA
Found at i:81463656 original size:147 final size:145
Alignment explanation
Indices: 81463483--81463787 Score: 339
Period size: 147 Copynumber: 2.1 Consensus size: 145
81463473 GTTTTAACCG
* * * *
81463483 AAGCGCCACAAACTATAAATCAAAACGCAGTCGCTT-CATCAACACTTACCTCAAACCCGTGGCG
1 AAGCGCCACTAACTATAAATCAAAACGAAGTCGCTTCCCT-AACACTTAACTCAAACCCGTGGCG
* ** * * *
81463547 TTTTCGCAAAAACGCCACTAATAACATTTACAAAACGGCAACATTTCTATAAATGATAGA-ACAA
65 TTTTCACAAAAACGCCACTAATAACATAGACAAAACGACAACATTTCAATAAA-CATA-ATAC-A
*
81463611 TTTTACGGCATTTTGA-GTA
127 TTTTACGGC-GTTTGATGTA
* * * * **
81463630 AAGCGCCACTAACTATAAGCTC-AAACGAAGTCGTTTCCCTAACAGTTAACTCAAGCTTGTGGCG
1 AAGCGCCACTAACTATAA-ATCAAAACGAAGTCGCTTCCCTAACACTTAACTCAAACCCGTGGCG
* *
81463694 TTTTCATAAAAACGCCACTAATACCATAGACAAAACGACAACATTTCAATAAACATAATTACATT
65 TTTTCACAAAAACGCCACTAATAACATAGACAAAACGACAACATTTCAATAAACATAA-TACATT
*
81463759 TTGCGGCGTTTGATGTA
129 TTACGGCGTTTGATGTA
81463776 AAGCGCCACTAA
1 AAGCGCCACTAA
81463788 TAGCAACGTA
Statistics
Matches: 133, Mismatches: 20, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
145 6 0.05
146 27 0.20
147 96 0.72
148 4 0.03
ACGTcount: A:0.37, C:0.24, G:0.14, T:0.25
Consensus pattern (145 bp):
AAGCGCCACTAACTATAAATCAAAACGAAGTCGCTTCCCTAACACTTAACTCAAACCCGTGGCGT
TTTCACAAAAACGCCACTAATAACATAGACAAAACGACAACATTTCAATAAACATAATACATTTT
ACGGCGTTTGATGTA
Found at i:81464532 original size:13 final size:14
Alignment explanation
Indices: 81464507--81464546 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
81464497 CATAAATTCT
81464507 AAACCTTAAACCCCA
1 AAACC-TAAACCCCA
81464522 AAACC-AAACCCCA
1 AAACCTAAACCCCA
*
81464535 AACCCTAAACCC
1 AAACCTAAACCC
81464547 TAAATCCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 12 0.52
14 6 0.26
15 5 0.22
ACGTcount: A:0.47, C:0.45, G:0.00, T:0.07
Consensus pattern (14 bp):
AAACCTAAACCCCA
Found at i:81464546 original size:14 final size:13
Alignment explanation
Indices: 81464514--81464559 Score: 56
Period size: 14 Copynumber: 3.4 Consensus size: 13
81464504 TCTAAACCTT
*
81464514 AAACCCCAAAACC
1 AAACCCCAAACCC
81464527 AAACCCCAAACCC
1 AAACCCCAAACCC
*
81464540 TAAACCCTAAATCCC
1 -AAACCCCAAA-CCC
81464555 AAACC
1 AAACC
81464560 GTAATATTCC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
13 12 0.41
14 14 0.48
15 3 0.10
ACGTcount: A:0.48, C:0.46, G:0.00, T:0.07
Consensus pattern (13 bp):
AAACCCCAAACCC
Found at i:81465024 original size:20 final size:20
Alignment explanation
Indices: 81464996--81465036 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
81464986 ATTAATTAAT
81464996 CAAAACCCTAAAT-CCTAACC
1 CAAAACCCT-AATCCCTAACC
*
81465016 CAAATCCCTAATCCCTAACC
1 CAAAACCCTAATCCCTAACC
81465036 C
1 C
81465037 TTAAACCTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 3 0.16
20 16 0.84
ACGTcount: A:0.39, C:0.44, G:0.00, T:0.17
Consensus pattern (20 bp):
CAAAACCCTAATCCCTAACC
Found at i:81465188 original size:14 final size:15
Alignment explanation
Indices: 81465169--81465201 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
81465159 CTTAAACCAG
81465169 AATCCCTAA-TCCAT
1 AATCCCTAATTCCAT
81465183 AATCCCTAATTCCAT
1 AATCCCTAATTCCAT
81465198 AATC
1 AATC
81465202 TATACGTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.36, C:0.33, G:0.00, T:0.30
Consensus pattern (15 bp):
AATCCCTAATTCCAT
Found at i:81465888 original size:113 final size:115
Alignment explanation
Indices: 81465533--81466162 Score: 582
Period size: 114 Copynumber: 5.5 Consensus size: 115
81465523 GCGGTGTTTT
* * ** * * * * * *
81465533 TTAAAAACGCCGCTAAAGCCCTAAAAGTTTAGAAAACGACGCCGTTGGGCTTAGGT-TTTTTGC-
1 TTAAAAACGCCACTAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTGGGCTTAGGTATTTTTTCT
* * *
81465596 GACGC-TTCAACAAAAACGCCGCTAAAGCCCTAAGCATTAGCGGCGCATT-C
66 GGCGCTTTC-TCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGC-TTAC
* * * * * * * * *
81465646 -TGAAAACGCCGCTAAAGCCCACGAATTG-TCAGAAAATGGTGTAGTTGGGCTTA--TTTTTTGT
1 TTAAAAACGCCACTAAATCCC-CGAA-AGCTCAAAAAACGGCGTCGTTGGGCTTAGGTATTTT-T
* *
81465707 TGC-GGCGCTTTCTCAAAAATGCCGCTAAAGCCCTGAGCATTACCGGCGCTTAC
63 T-CTGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTAC
* * * *
81465760 GTAAAAACGTCACTAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTGGGCTTTGGT-TTTTCTCT
1 TTAAAAACGCCACTAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTGGGCTTAGGTATTTTTTCT
* * **
81465824 GGTGCTTTCTCAAAAATGCTACTAAAG-CCTGAGCATTAGCGGCGCTTAC
66 GGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTAC
* *
81465873 TTAAAAACGCCACTAAATCCCCGAAAGCTCAAAAAACGACGTCGTTGGACTTAGGTATTTTTTC-
1 TTAAAAACGCCACTAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTGGGCTTAGGTATTTTTTCT
* * * *
81465937 GGCGCTTTCCCAAAAACGCCCCTAAAGCCCTAAGCATTAGCGGCGTTTAC
66 GGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTAC
* * * * * * * * *
81465987 TAAAAAACGCCACTAAATCCCTGAAAGCTTAGAAAACGGCGTCGCTGGGCTTTGCTTTTTTTTGT
1 TTAAAAACGCCACTAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTGGGCTTAGGTATTTTTTCT
** * * *
81466052 GGCGCTTTCTTGAAAACGCCGCGAAAGCCCTGAGCATTAGTGGCGCTTTC
66 GGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTAC
** * *** * *
81466102 TTAAAAATACCGCTAAATCCCCGAAAGCTTGGAAAACGGTGTCATTGGGCTTAGGTATTTT
1 TTAAAAACGCCACTAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTGGGCTTAGGTATTTT
81466163 GCGGCGCTTT
Statistics
Matches: 426, Mismatches: 76, Indels: 28
0.80 0.14 0.05
Matches are distributed among these distances:
111 1 0.00
112 23 0.05
113 120 0.28
114 168 0.39
115 113 0.27
116 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.26
Consensus pattern (115 bp):
TTAAAAACGCCACTAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTGGGCTTAGGTATTTTTTCT
GGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTAC
Found at i:81466183 original size:227 final size:226
Alignment explanation
Indices: 81465606--81466188 Score: 636
Period size: 227 Copynumber: 2.6 Consensus size: 226
81465596 GACGCTTCAA
* * * *
81465606 CAAAAACGCCGCTAAAGCCCTAAGCATTAGCGGCGCATTC-TGAAAACGCCGCTAAAGCCCACGA
1 CAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCC-CGA
* * ** * *
81465670 ATTG-TCAGAAAATGGTGT-AGTTGGGCTTATTTTTTGTTGCGGCGCTTTCTCAAAAATGCCGCT
65 A-AGCTCAGAAAACGGTGTCA-TTGGGCTTAGGTATT-TTGCGGCGCTTTCT-AAAAACGCCGCT
* *
81465733 AAAGCCCTGAGCATTACCGGCGCTTACGTAAAAACGTCACTAAATCCCCGAAAGCTCAAAAAACG
126 AAAGCCCTAAGCATTACCGGCGCTTACGTAAAAACGCCACTAAATCCCCGAAAGCTCAAAAAACG
* *
81465798 GCGTCGTTGGGCTTTGGTTTTTCTCTGGTGCTTTCT
191 GCGTCGCTGGGCTTTGGTTTTTCTCTGGCGCTTTCT
* ** * *
81465834 CAAAAATGCTACTAAAG-CCTGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAA
1 CAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAA
* ** * * * * *
81465898 AGCTCAAAAAACGACGTCGTTGGACTTAGGTATTTTTTCGGCGCTTTCCCAAAAACGCCCCTAAA
66 AGCTCAGAAAACGGTGTCATTGGGCTTAGGTA-TTTTGCGGCGCTTT-CTAAAAACGCCGCTAAA
* * * * *
81465963 GCCCTAAGCATTAGCGGCGTTTAC-TAAAAAACGCCACTAAATCCCTGAAAGCTTAGAAAACGGC
129 GCCCTAAGCATTACCGGCGCTTACGT-AAAAACGCCACTAAATCCCCGAAAGCTCAAAAAACGGC
* * *
81466027 GTCGCTGGGCTTTGCTTTTTTTTGTGGCGCTTTCT
193 GTCGCTGGGCTTTG-GTTTTTCTCTGGCGCTTTCT
** * * **
81466062 TGAAAACGCCGCGAAAGCCCTGAGCATTAGTGGCGCTTTCTTAAAAATACCGCTAAATCCCCGAA
1 CAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAA
** * **
81466127 AGCTTGGAAAACGGTGTCATTGGGCTTAGGTATTTTGCGGCGCTTTATGGAAACGCCGCTAA
66 AGCTCAGAAAACGGTGTCATTGGGCTTAGGTATTTTGCGGCGCTTTCTAAAAACGCCGCTAA
81466189 TGCTTATTTT
Statistics
Matches: 288, Mismatches: 59, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
226 2 0.01
227 145 0.50
228 74 0.26
229 67 0.23
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.26
Consensus pattern (226 bp):
CAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAA
AGCTCAGAAAACGGTGTCATTGGGCTTAGGTATTTTGCGGCGCTTTCTAAAAACGCCGCTAAAGC
CCTAAGCATTACCGGCGCTTACGTAAAAACGCCACTAAATCCCCGAAAGCTCAAAAAACGGCGTC
GCTGGGCTTTGGTTTTTCTCTGGCGCTTTCT
Found at i:81470423 original size:5 final size:5
Alignment explanation
Indices: 81470413--81470468 Score: 78
Period size: 5 Copynumber: 11.2 Consensus size: 5
81470403 ATATATTAAT
* *
81470413 TTCAA TTCAA TTCAA TTCAA TTCAA TTCAA TTCAA -TCAA TTTTAA ATCAA
1 TTCAA TTCAA TTCAA TTCAA TTCAA TTCAA TTCAA TTCAA -TTCAA TTCAA
81470463 TTCAA T
1 TTCAA T
81470469 AATCAAAGTG
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
4 4 0.09
5 38 0.84
6 3 0.07
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (5 bp):
TTCAA
Found at i:81472067 original size:11 final size:11
Alignment explanation
Indices: 81472051--81472078 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
81472041 TATATATTAG
81472051 GTAACTACTTT
1 GTAACTACTTT
81472062 GTAACTACTTT
1 GTAACTACTTT
81472073 GTAACT
1 GTAACT
81472079 CATATATTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.29, C:0.18, G:0.11, T:0.43
Consensus pattern (11 bp):
GTAACTACTTT
Found at i:81475249 original size:17 final size:16
Alignment explanation
Indices: 81475220--81475267 Score: 60
Period size: 17 Copynumber: 2.9 Consensus size: 16
81475210 AATATATTTC
81475220 TAAATAAATAATTATAT
1 TAAA-AAATAATTATAT
*
81475237 TAAAAAATAAATTAAAT
1 TAAAAAAT-AATTATAT
*
81475254 TATAAAATAATTAT
1 TAAAAAATAATTAT
81475268 TTTTAATTGT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 9 0.33
17 18 0.67
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
TAAAAAATAATTATAT
Found at i:81481696 original size:44 final size:45
Alignment explanation
Indices: 81481629--81482246 Score: 214
Period size: 44 Copynumber: 13.7 Consensus size: 45
81481619 TATAGCAAAC
* * * * *
81481629 CTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAGTTA-CTAGT
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGTTAGCGAAT
* * *
81481673 CTTATCTCCTTGAAGTTGTAGTGGAGCAGAATGAAGATAGCGAAT
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGTTAGCGAAT
* *
81481718 CTTATTTCCCTGAAGTTGTAGTGGAACAGATTGAAGTTATAAATTGC-AGAT
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAG-T-T--A--GCGA-AT
* * * * * * *
81481769 CTTATCTCTCTGAAGTTGCAGTAGAGCATA-T-CA--TAGCAAAC
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGTTAGCGAAT
** * ** * *
81481810 CTTATCTCTTTGAAGTTGCAGTAAAGCAGGTTGAAGATA-C-AAGT
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGTTAGCGAA-T
* * * * *
81481854 CTTATCTCTCTGAAGTTGCAGTGGAGCAAACTGAAGATAGCGAAT
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGTTAGCGAAT
* * *
81481899 CTTAAT-TCCCTGAAGTTGCAGTGGAACGGATTGAAGCTATAAATTGC-AGAT
1 CTT-ATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAG-T-T--A--GCGA-AT
* * * * * * *
81481950 CTTATCTCTCTGAAGTTGCAGTAGAGCATA-T-CA--TATCAAAT
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGTTAGCGAAT
* * * * * * *
81481991 CTTATCTCTCTGAAGTTGCAGTAGAGCAGA-T-CA--TATCAAAC
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGTTAGCGAAT
* * ** * * * * * *
81482032 CTTATCTCCCTAAAGTTGCAGTGGAATAGGTTAAAAATAAACCAAT
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGATT-GAAGTTAGCGAAT
* * * * ** *
81482078 CTTATCTCCTTGAAGGTGCAGTGGAGCATATTGAAGACAGGATACAAAT
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGTTA-G---CGAAT
* * * ** * *
81482127 CTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCCA-CAAAC
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGTTAGCGAAT
* * *
81482171 CTTATCTCCCTGAAGTTGTAGTGGAGCAAATTGAAGCTA-CTAAT
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGTTAGCGAAT
* * * *
81482215 CCTATCTCCCTGAAATTGTAATGGAGCGGATT
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGATT
81482247 AAAACGATAA
Statistics
Matches: 448, Mismatches: 91, Indels: 70
0.74 0.15 0.11
Matches are distributed among these distances:
41 95 0.21
42 4 0.01
43 5 0.01
44 136 0.30
45 72 0.16
46 33 0.07
47 2 0.00
49 41 0.09
50 6 0.01
51 54 0.12
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (45 bp):
CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGTTAGCGAAT
Found at i:81481752 original size:89 final size:89
Alignment explanation
Indices: 81481620--81482228 Score: 307
Period size: 89 Copynumber: 6.8 Consensus size: 89
81481610 ATTGAAGATT
* * *
81481620 ATAGCAAACCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAGTTACTAGTCTTATCTC-CTT
1 ATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGTTACTAGTCTTATCTCTC-T
*
81481684 GAAGTTGTAGTGGAGCAGAATGAAG
65 GAAGTTGCAGTGGAGCAGAATGAAG
* * * * *
81481709 ATAGCGAATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTGAAGTTATAAATTGCAGATCTTAT
1 ATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAG-T-T--ACT--AG-TCTTAT
* **
81481774 CTCTCTGAAGTTGCAGT--AG-AGCAT-ATC
59 CTCTCTGAAGTTGCAGTGGAGCAGAATGAAG
** * * * *
81481801 ATAGCAAACCTTATCTCTTTGAAGTTGCAGT-AAAGCAGGTTGAAGATACAAGTCTTATCTCTCT
1 ATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGAA-CAGATTGAAGTTACTAGTCTTATCTCTCT
81481865 GAAGTTGCAGTGGAGCA-AACTGAAG
65 GAAGTTGCAGTGGAGCAGAA-TGAAG
* * * *
81481890 ATAGCGAATCTTAAT-TCCCTGAAGTTGCAGTGGAACGGATTGAAGCTATAAATTGCAGATCTTA
1 ATAGCAAACCTT-ATCTCCCTGAAGTTGCAGTGGAACAGATTGAAG-T-T--ACT--AG-TCTTA
* **
81481954 TCTCTCTGAAGTTGCAGT--AG-AGCAT-ATC
58 TCTCTCTGAAGTTGCAGTGGAGCAGAATGAAG
* * * * * * * ** *
81481982 ATATCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-T-CA--TATCAAACCTTATCTCCCT
1 ATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGTTA-CTAGTCTTATCTCTCT
* ** ** * *
81482043 AAAGTTGCAGTGGAATAGGTTAAAA
65 GAAGTTGCAGTGGAGCAGAATGAAG
* * * * * * * * * *
81482068 ATAAACCAATCTTATCTCCTTGAAGGTGCAGTGGAGCATATTGAAGACAGGATACAAATCTTATC
1 AT-AGCAAACCTTATCTCCCTGAAGTTGCAGTGGAACAGATT---GA-A-GTTACTAGTCTTATC
* *
81482133 TCTCTGAAGTTGCAGTGGAGCAGATTAAAG
60 TCTCTGAAGTTGCAGTGGAGCAGAATGAAG
** * * * * * * *
81482163 CCA-CAAACCTTATCTCCCTGAAGTTGTAGTGGAGCAAATTGAAGCTACTAATCCTATCTCCCTG
1 ATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGTTACTAGTCTTATCTCTCTG
81482227 AA
66 AA
81482229 ATTGTAATGG
Statistics
Matches: 396, Mismatches: 84, Indels: 81
0.71 0.15 0.14
Matches are distributed among these distances:
82 20 0.05
83 1 0.00
84 2 0.01
85 26 0.07
86 6 0.02
87 33 0.08
88 23 0.06
89 72 0.18
90 9 0.02
91 7 0.02
92 66 0.17
93 41 0.10
94 6 0.02
95 38 0.10
96 45 0.11
97 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.30
Consensus pattern (89 bp):
ATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGTTACTAGTCTTATCTCTCTG
AAGTTGCAGTGGAGCAGAATGAAG
Found at i:81481826 original size:41 final size:42
Alignment explanation
Indices: 81481767--81482053 Score: 206
Period size: 41 Copynumber: 6.6 Consensus size: 42
81481757 TAAATTGCAG
81481767 ATCTTATCTCTCTGAAGTTGCAGTAGAGCA-TATCATAGCAA
1 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGTATCATAGCAA
* * * **
81481808 ACCTTATCTCTTTGAAGTTGCAGTAAAGCAGGTTGAAGATA-CAA
1 ATCTTATCTCTCTGAAGTTGCAGTAGAGCA-G-T-ATCATAGCAA
* * * ** *
81481852 GTCTTATCTCTCTGAAGTTGCAGTGGAGCAAACTGAAGATAGCGA
1 ATCTTATCTCTCTGAAGTTGCAGTAGAGC--AGT-ATCATAGCAA
* * * * *
81481897 ATCTTAAT-TCCCTGAAGTTGCAGTGGAACGGATTGAAGCTATAAATTGCAG
1 ATCTT-ATCTCTCTGAAGTTGCAGT---A--GA--GCAG-TAT-CATAGCAA
*
81481948 ATCTTATCTCTCTGAAGTTGCAGTAGAGCA-TATCATATCAA
1 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGTATCATAGCAA
*
81481989 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAG-ATCATATCAA
1 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGTATCATAGCAA
* * *
81482030 ACCTTATCTCCCTAAAGTTGCAGT
1 ATCTTATCTCTCTGAAGTTGCAGT
81482054 GGAATAGGTT
Statistics
Matches: 196, Mismatches: 31, Indels: 38
0.74 0.12 0.14
Matches are distributed among these distances:
41 92 0.47
42 3 0.02
44 38 0.19
45 25 0.13
46 5 0.03
48 1 0.01
50 6 0.03
51 25 0.13
52 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.31
Consensus pattern (42 bp):
ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGTATCATAGCAA
Found at i:81481924 original size:181 final size:181
Alignment explanation
Indices: 81481620--81482019 Score: 642
Period size: 181 Copynumber: 2.2 Consensus size: 181
81481610 ATTGAAGATT
* * * * *
81481620 ATAGCAAACCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAGTTACTAGTCTTATCTCCTTG
1 ATAGCAAACCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAGATACAAGTCTTATCTCCTTG
* * *
81481685 AAGTTGTAGTGGAGCAGAATGAAGATAGCGAATCTTATTTCCCTGAAGTTGTAGTGGAACAGATT
66 AAGTTGCAGTGGAGCAGAATGAAGATAGCGAATCTTAATTCCCTGAAGTTGCAGTGGAACAGATT
*
81481750 GAAGTTATAAATTGCAGATCTTATCTCTCTGAAGTTGCAGTAGAGCATATC
131 GAAGCTATAAATTGCAGATCTTATCTCTCTGAAGTTGCAGTAGAGCATATC
* *
81481801 ATAGCAAACCTTATCTCTTTGAAGTTGCAGTAAAGCAGGTTGAAGATACAAGTCTTATCT-CTCT
1 ATAGCAAACCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAGATACAAGTCTTATCTCCT-T
*
81481865 GAAGTTGCAGTGGAGCA-AACTGAAGATAGCGAATCTTAATTCCCTGAAGTTGCAGTGGAACGGA
65 GAAGTTGCAGTGGAGCAGAA-TGAAGATAGCGAATCTTAATTCCCTGAAGTTGCAGTGGAACAGA
81481929 TTGAAGCTATAAATTGCAGATCTTATCTCTCTGAAGTTGCAGTAGAGCATATC
129 TTGAAGCTATAAATTGCAGATCTTATCTCTCTGAAGTTGCAGTAGAGCATATC
* *
81481982 ATATCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAG
1 ATAGCAAACCTTATCTCTCTGAAGTTGCAGTAGAGCAG
81482020 ATCATATCAA
Statistics
Matches: 201, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
180 4 0.02
181 197 0.98
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (181 bp):
ATAGCAAACCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAGATACAAGTCTTATCTCCTTG
AAGTTGCAGTGGAGCAGAATGAAGATAGCGAATCTTAATTCCCTGAAGTTGCAGTGGAACAGATT
GAAGCTATAAATTGCAGATCTTATCTCTCTGAAGTTGCAGTAGAGCATATC
Found at i:81482376 original size:44 final size:44
Alignment explanation
Indices: 81482310--81482432 Score: 147
Period size: 45 Copynumber: 2.8 Consensus size: 44
81482300 ATAGCAAGTT
* **
81482310 TTATCTTCCTAAAATTGTAGTGGAACAGATTAAAACCACAAATC
1 TTATCTCCCTAAAATTACAGTGGAACAGATTAAAACCACAAATC
* * **
81482354 TTATCTCCCTAAAATTACAGTGGAGCAGATTGCAAACCATTAATC
1 TTATCTCCCTAAAATTACAGTGGAACAGATT-AAAACCACAAATC
* * *
81482399 TTATCTCTCTAAAGTTACAGTAGAACAGATTAAA
1 TTATCTCCCTAAAATTACAGTGGAACAGATTAAA
81482433 GCTACAAGTC
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
44 29 0.44
45 37 0.56
ACGTcount: A:0.39, C:0.19, G:0.12, T:0.30
Consensus pattern (44 bp):
TTATCTCCCTAAAATTACAGTGGAACAGATTAAAACCACAAATC
Found at i:81482937 original size:22 final size:20
Alignment explanation
Indices: 81482901--81482940 Score: 62
Period size: 22 Copynumber: 1.9 Consensus size: 20
81482891 GCCACCACCG
81482901 CCACGTCAACCTCCGTACCT
1 CCACGTCAACCTCCGTACCT
81482921 CCACGTCAGCACCTCCGTAC
1 CCACGTCA--ACCTCCGTAC
81482941 ACAGCTGGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.44
22 10 0.56
ACGTcount: A:0.20, C:0.50, G:0.12, T:0.17
Consensus pattern (20 bp):
CCACGTCAACCTCCGTACCT
Found at i:81484011 original size:60 final size:60
Alignment explanation
Indices: 81483892--81484003 Score: 140
Period size: 60 Copynumber: 1.9 Consensus size: 60
81483882 TATCATTCTC
* * * *
81483892 TTACTTTTAAAATATTTAAATCTAATATTAGGTATTATTTTATCTATCTATTTATTTTTT
1 TTACTCTTAAAATATTTAAATCTAACATTAGGTATCATATTATCTATCTATTTATTTTTT
*
81483952 TTACTCTTAAAATATTTAAA-CTTAACATTATGTATACATATT-T-TATCTATTT
1 TTACTCTTAAAATATTTAAATC-TAACATTAGGTAT-CATATTATCTATCTATTT
81484004 CGTTTTTTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
59 10 0.22
60 31 0.69
61 4 0.09
ACGTcount: A:0.34, C:0.09, G:0.03, T:0.54
Consensus pattern (60 bp):
TTACTCTTAAAATATTTAAATCTAACATTAGGTATCATATTATCTATCTATTTATTTTTT
Found at i:81484137 original size:18 final size:17
Alignment explanation
Indices: 81484103--81484144 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
81484093 TCCCAAGAAC
81484103 TGTTTCATTTATTTTATT
1 TGTTT-ATTTATTTTATT
81484121 TGTTTATTTATTATTATT
1 TGTTTATTTATT-TTATT
*
81484139 TATTTA
1 TGTTTA
81484145 CAAATTGCTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.21, C:0.02, G:0.05, T:0.71
Consensus pattern (17 bp):
TGTTTATTTATTTTATT
Found at i:81484206 original size:90 final size:92
Alignment explanation
Indices: 81484032--81484222 Score: 350
Period size: 90 Copynumber: 2.1 Consensus size: 92
81484022 ATTTTTATTA
* *
81484032 TTATCTATTATGTATTTATTTACAAATTGCTCCTTTAACTTTTTCTTTCTTTCTTTTTTTTTCCC
1 TTATTTATTATGTATTTATTTACAAATTGCTCCTTTAACTTTTTCTTTCTTTCTTTTCTTTTCCC
81484097 AAGAACTGTTTCATTTATTTTATTTGT
66 AAGAACTGTTTCATTTATTTTATTTGT
81484124 TTATTTATTAT-TATTTATTTACAAATTGCTCCTTTAACTTTTTCTTTCTTTC-TTTCTTTTCCC
1 TTATTTATTATGTATTTATTTACAAATTGCTCCTTTAACTTTTTCTTTCTTTCTTTTCTTTTCCC
81484187 AAGAACTGTTTCATTTATTTTATTTGT
66 AAGAACTGTTTCATTTATTTTATTTGT
81484214 TTATTTATT
1 TTATTTATT
81484223 TAGTTTCAAT
Statistics
Matches: 97, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
90 46 0.47
91 41 0.42
92 10 0.10
ACGTcount: A:0.20, C:0.15, G:0.05, T:0.61
Consensus pattern (92 bp):
TTATTTATTATGTATTTATTTACAAATTGCTCCTTTAACTTTTTCTTTCTTTCTTTTCTTTTCCC
AAGAACTGTTTCATTTATTTTATTTGT
Found at i:81485785 original size:123 final size:119
Alignment explanation
Indices: 81485612--81485913 Score: 437
Period size: 123 Copynumber: 2.5 Consensus size: 119
81485602 ATTTTTTTTT
* *
81485612 AAAAAG-AGAAAGTTTAGATTTTTTAAAAATAAAAATATGTTTTTAGTCATTTTAAAGGAAAAAC
1 AAAAAGAAAAAAGTTTAGA-TTTTTAAAAATAAAAATATGTTTTTATTCATTTTAAAGGAAAAAC
*
81485676 TATTTCGAAATAAAAGTTTTGATCTTTTAGAAAAGTAGTGATTTTTTTAAAAGAA
65 TATTTCGAAATAAAAGTTTTGATCTTTAAGAAAAGTAGTGATTTTTTTAAAAGAA
*
81485731 AAAAAGAAGAAGGAAGTTTAGATTTTTAAAAATAAAAATATGCTTTTTATTCATTTTAAAGGGAA
1 AAAAAGAA-AA--AAGTTTAGATTTTTAAAAATAAAAATATG-TTTTTATTCATTTTAAAGGAAA
* * *
81485796 AACTATTTTGAAATAAAAGTTTTGATCTTTAAGAAAAGTTGTGCTTTTTTTAAAAGAA
62 AACTATTTCGAAATAAAAGTTTTGATCTTTAAGAAAAGTAGTGATTTTTTTAAAAGAA
* * * *
81485854 AAAAAGAATAAA-TTTTGATTTTTAAAAATAAAAATAATTTTTTTTTTCATTTTAAAGGAA
1 AAAAAGAAAAAAGTTTAGATTTTTAAAAATAAAAAT-ATGTTTTTATTCATTTTAAAGGAA
81485914 TGTTTAAAAT
Statistics
Matches: 165, Mismatches: 12, Indels: 12
0.87 0.06 0.06
Matches are distributed among these distances:
119 47 0.28
120 5 0.03
121 1 0.01
122 21 0.13
123 91 0.55
ACGTcount: A:0.45, C:0.03, G:0.13, T:0.39
Consensus pattern (119 bp):
AAAAAGAAAAAAGTTTAGATTTTTAAAAATAAAAATATGTTTTTATTCATTTTAAAGGAAAAACT
ATTTCGAAATAAAAGTTTTGATCTTTAAGAAAAGTAGTGATTTTTTTAAAAGAA
Found at i:81486080 original size:157 final size:155
Alignment explanation
Indices: 81485794--81486322 Score: 681
Period size: 157 Copynumber: 3.4 Consensus size: 155
81485784 TTTTAAAGGG
* * * * *
81485794 AAAACTATTTTGAAATAAAAGTTTTGATCTTTAAGAAAAGTTGTGCTTTTTTTAAAAG--AAAAA
1 AAAACTATTTCGAAAT-AAAGCTTTGATTTTTAAGAAAAGTAGTG-ATTTTTTAAAAGAAAAAAA
* * * * * *
81485857 AAGAATAAATTTTGATTTTTAAAAATAAAAATAAT-TTTTTTT-TTCATTTTAAAGGAATGTTTA
64 AAGGAGAAATTTAGATTTTAAAAAATAAAAAT-ATGTTTTTTTAGTCATTTTAAAGGAAAGTTTA
* *
81485920 AAATTTTAAAACAAAGTTTTAATCTTTT
128 AAATTTTAAAATAAAGTTTTGATCTTTT
* *
81485948 AAAACTATTTCGAAATAAAGCTTTGGTTTTTAAGAAATGTAGTGATTTTTTAAAAGAAAAAGAAA
1 AAAACTATTTCGAAATAAAGCTTTGATTTTTAAGAAAAGTAGTGATTTTTTAAAAGAAAAA-AAA
81486013 AGGAGAAAGTTTAGATTTTAAAAAATAAAAATATGTTTTTTTAGTCATTTTAAAGGAAAGTTTAA
65 AGGAGAAA-TTTAGATTTTAAAAAATAAAAATATGTTTTTTTAGTCATTTTAAAGGAAAGTTTAA
81486078 AATTTTAAAATAAAGTTTTGATCTTTT
129 AATTTTAAAATAAAGTTTTGATCTTTT
* ** *
81486105 TAAACTATTTCGAAATAAAATTTTGATTTTTAAGAAAAGTAATGATTTTTTAAAAGAAAAAAAAA
1 AAAACTATTTCGAAATAAAGCTTTGATTTTTAAGAAAAGTAGTGATTTTTTAAAAGAAAAAAAAA
* * * *
81486170 AGAGAAAATTTAGATTTTAAAAAATCAAAATATGTTTTTTTTAGTCATTTTAAA-TAAATTTTTA
66 GGAG-AAATTTAGATTTTAAAAAATAAAAATATG-TTTTTTTAGTCATTTTAAAGGAAA-GTTTA
*
81486234 AAATTTTAAAATAAAGTTATGATCTTTT
128 AAATTTTAAAATAAAGTTTTGATCTTTT
** * * *
81486262 TCAATTATTTCTAAATAAAGCTTTGATTTTTAAGAAAATTAGTGATTTTTTTAAAAGAAAA
1 AAAACTATTTCGAAATAAAGCTTTGATTTTTAAGAAAAGTAGTGA-TTTTTTAAAAGAAAA
81486323 CTTTGATTTT
Statistics
Matches: 332, Mismatches: 33, Indels: 16
0.87 0.09 0.04
Matches are distributed among these distances:
152 11 0.03
153 23 0.07
154 18 0.05
155 11 0.03
156 63 0.19
157 191 0.58
158 15 0.05
ACGTcount: A:0.45, C:0.04, G:0.10, T:0.41
Consensus pattern (155 bp):
AAAACTATTTCGAAATAAAGCTTTGATTTTTAAGAAAAGTAGTGATTTTTTAAAAGAAAAAAAAA
GGAGAAATTTAGATTTTAAAAAATAAAAATATGTTTTTTTAGTCATTTTAAAGGAAAGTTTAAAA
TTTTAAAATAAAGTTTTGATCTTTT
Found at i:81502485 original size:17 final size:16
Alignment explanation
Indices: 81502457--81502510 Score: 65
Period size: 16 Copynumber: 3.3 Consensus size: 16
81502447 GAATTTTTTT
*
81502457 ATTTGAAAACACAAGA
1 ATTTTAAAACACAAGA
81502473 ATTTTAGAAACACGAA-A
1 ATTTTA-AAACAC-AAGA
*
81502490 ATTTTAAAACCCAAGA
1 ATTTTAAAACACAAGA
81502506 ATTTT
1 ATTTT
81502511 TTTGAAAACA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
15 2 0.06
16 16 0.48
17 13 0.39
18 2 0.06
ACGTcount: A:0.50, C:0.13, G:0.09, T:0.28
Consensus pattern (16 bp):
ATTTTAAAACACAAGA
Found at i:81502530 original size:17 final size:17
Alignment explanation
Indices: 81502458--81502793 Score: 102
Period size: 17 Copynumber: 18.8 Consensus size: 17
81502448 AATTTTTTTA
81502458 TTTGAAAACAC-AAGAAT
1 TTTGAAAACACGAA-AAT
81502475 TTT-AGAAACACGAAAAT
1 TTTGA-AAACACGAAAAT
*
81502492 TTT-AAAAC-CCAAGAATTTT
1 TTTGAAAACACGAA-AA---T
81502511 TTTGAAAACACGAAAAT
1 TTTGAAAACACGAAAAT
* * *
81502528 TTTTAAAACATGAGAATTT
1 TTTGAAAACACGA-AA-AT
81502547 TTTGAAAACACGAAAATT
1 TTTGAAAACACGAAAA-T
* **
81502565 TTTG-AAACATGAATTTTT
1 TTTGAAAACACGAA--AAT
81502583 TTTGAAAACACGAAAAT
1 TTTGAAAACACGAAAAT
* * ***
81502600 TTATG-AAGCATGATTTTTTT
1 TT-TGAAAACACGA---AAAT
81502620 TTTGAAAACACGAAAAT
1 TTTGAAAACACGAAAAT
* **
81502637 TTATGAAATGCGA-GAATTTTTT
1 TT-TGAAA-AC-ACGAA---AAT
*
81502659 TTTGAAAACTC--AAAT
1 TTTGAAAACACGAAAAT
***
81502674 TTTTTTAACACGAAAAT
1 TTTGAAAACACGAAAAT
**
81502691 TGTTGAAAACACGAACTT
1 T-TTGAAAACACGAAAAT
* *
81502709 TTTTAAAACACGAAATTTT
1 TTTGAAAACACGAAA--AT
*
81502728 TTTGAAAACACGGAAATT
1 TTTGAAAACAC-GAAAAT
*
81502746 TTTGAAATAC-CGAAATT
1 TTTGAAA-ACACGAAAAT
*
81502763 TTTGAAAGCAC-AAAGATT
1 TTTGAAAACACGAAA-A-T
81502781 TTTG-AAACACGAA
1 TTTGAAAACACGAA
81502794 TTTTTTGATT
Statistics
Matches: 236, Mismatches: 46, Indels: 73
0.66 0.13 0.21
Matches are distributed among these distances:
15 11 0.05
16 11 0.05
17 84 0.36
18 53 0.22
19 44 0.19
20 22 0.09
21 8 0.03
22 3 0.01
ACGTcount: A:0.43, C:0.11, G:0.12, T:0.34
Consensus pattern (17 bp):
TTTGAAAACACGAAAAT
Found at i:81502748 original size:36 final size:36
Alignment explanation
Indices: 81502480--81502799 Score: 255
Period size: 36 Copynumber: 8.9 Consensus size: 36
81502470 AGAATTTTAG
* *
81502480 AAACACGAAAA-TTTTAAAACCCAAGAATTTTTTTGA
1 AAACACGAAAATTTTTAAAACACGA-AATTTTTTTGA
*
81502516 AAACACGAAAATTTTTAAAACATGAGAA-TTTTTTGA
1 AAACACGAAAATTTTTAAAACACGA-AATTTTTTTGA
* * *
81502552 AAACACGAAAATTTTTGAAACATGAATTTTTTTTGA
1 AAACACGAAAATTTTTAAAACACGAAATTTTTTTGA
* * * * **
81502588 AAACACGAAAATTTATGAAGCATGATTTTTTTTTTGA
1 AAACACGAAAATTTTTAAAACACGA-AATTTTTTTGA
* * **
81502625 AAACACGAAAATTTATGAAATGCGAGAATTTTTTTTTGA
1 AAACACGAAAATTTTTAAAACACGA-AA--TTTTTTTGA
* ** * *
81502664 AAACTC--AAATTTTTTTAACACGAAA-ATTGTTGA
1 AAACACGAAAATTTTTAAAACACGAAATTTTTTTGA
**
81502697 AAACACGAACTTTTTTAAAACACGAAATTTTTTTGA
1 AAACACGAAAATTTTTAAAACACGAAATTTTTTTGA
*
81502733 AAACACGGAAATTTTTGAAATAC-CGAAA--TTTTTGA
1 AAACACGAAAATTTTT-AAA-ACACGAAATTTTTTTGA
* *
81502768 AAGCAC-AAAGATTTTTGAAACACG-AATTTTTT
1 AAACACGAAA-ATTTTTAAAACACGAAATTTTTT
81502800 GATTTTTCCT
Statistics
Matches: 234, Mismatches: 36, Indels: 29
0.78 0.12 0.10
Matches are distributed among these distances:
33 15 0.06
34 6 0.03
35 38 0.16
36 95 0.41
37 64 0.27
38 2 0.01
39 14 0.06
ACGTcount: A:0.42, C:0.11, G:0.12, T:0.35
Consensus pattern (36 bp):
AAACACGAAAATTTTTAAAACACGAAATTTTTTTGA
Found at i:81502799 original size:17 final size:17
Alignment explanation
Indices: 81502504--81502799 Score: 107
Period size: 18 Copynumber: 16.5 Consensus size: 17
81502494 TAAAACCCAA
81502504 GAATTTTTTTGAAAACAC
1 GAATTTTTTTG-AAACAC
** * *
81502522 GAAAATTTTTAAAACAT
1 GAATTTTTTTGAAACAC
*
81502539 GAGAATTTTTTGAAAACAC
1 GA-ATTTTTTTG-AAACAC
** *
81502558 GAAAATTTTTGAAACAT
1 GAATTTTTTTGAAACAC
81502575 GAATTTTTTTTGAAAACAC
1 GAA-TTTTTTTG-AAACAC
** * * *
81502594 GAAAATTTATGAAGCAT
1 GAATTTTTTTGAAACAC
*
81502611 GATTTTTTTTTTGAAAACAC
1 GA--ATTTTTTTG-AAACAC
** *
81502631 GAAAATTTATGAAATGCGA-
1 GAATTTTTTTGAAA--C-AC
*
81502650 GAATTTTTTTTTGAAAACTC
1 GAA--TTTTTTTG-AAACAC
*
81502670 AAATTTTTTT--AACAC
1 GAATTTTTTTGAAACAC
** *
81502685 GAAAATTGTTGAAAACAC
1 GAATTTTTTTG-AAACAC
* *
81502703 GAACTTTTTTAAAACAC
1 GAATTTTTTTGAAACAC
81502720 GAAATTTTTTTGAAAACAC
1 G-AATTTTTTTG-AAACAC
* *
81502739 GGAA-ATTTTTGAAATACC
1 -GAATTTTTTTGAAACA-C
*
81502757 GAA-ATTTTTGAAAGCAC
1 GAATTTTTTTGAAA-CAC
* **
81502774 AAAGATTTTTGAAACAC
1 GAATTTTTTTGAAACAC
81502791 GAATTTTTT
1 GAATTTTTT
81502800 GATTTTTCCT
Statistics
Matches: 205, Mismatches: 50, Indels: 47
0.68 0.17 0.16
Matches are distributed among these distances:
15 10 0.05
17 60 0.29
18 84 0.41
19 32 0.16
20 11 0.05
21 5 0.02
22 3 0.01
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.37
Consensus pattern (17 bp):
GAATTTTTTTGAAACAC
Found at i:81503503 original size:6 final size:6
Alignment explanation
Indices: 81503494--81503595 Score: 84
Period size: 6 Copynumber: 16.3 Consensus size: 6
81503484 TATTTTTATT
* *
81503494 TTTTTC TTTTT- TCTTCTC TTTTTC TTTTTTC TTTTTTC TTTCTC TTTTTC
1 TTTTTC TTTTTC T-TTTTC TTTTTC -TTTTTC -TTTTTC TTTTTC TTTTTC
* *
81503544 TTCTTTC TTTTTTTC TTCTTTC TTTTTC --TTTC TTTTTC TTCTTC TTCTTC
1 TT-TTTC --TTTTTC TT-TTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC
81503594 TT
1 TT
81503596 CTTTGGGCCG
Statistics
Matches: 82, Mismatches: 5, Indels: 18
0.78 0.05 0.17
Matches are distributed among these distances:
4 4 0.05
5 1 0.01
6 47 0.57
7 24 0.29
8 4 0.05
9 2 0.02
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (6 bp):
TTTTTC
Found at i:81503503 original size:7 final size:7
Alignment explanation
Indices: 81503493--81503574 Score: 77
Period size: 7 Copynumber: 12.4 Consensus size: 7
81503483 TTATTTTTAT
81503493 TTTTTTC
1 TTTTTTC
81503500 TTTTTTC
1 TTTTTTC
*
81503507 --TTCTC
1 TTTTTTC
81503512 -TTTTTC
1 TTTTTTC
81503518 TTTTTTC
1 TTTTTTC
81503525 TTTTTTC
1 TTTTTTC
*
81503532 -TTTCTC
1 TTTTTTC
81503538 -TTTTTC
1 TTTTTTC
*
81503544 TTCTTTC
1 TTTTTTC
81503551 TTTTTTTC
1 -TTTTTTC
*
81503559 TTCTTTC
1 TTTTTTC
81503566 -TTTTTC
1 TTTTTTC
81503572 TTT
1 TTT
81503575 CTTTTTCTTC
Statistics
Matches: 62, Mismatches: 8, Indels: 10
0.77 0.10 0.12
Matches are distributed among these distances:
5 4 0.06
6 19 0.31
7 33 0.53
8 6 0.10
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (7 bp):
TTTTTTC
Found at i:81503522 original size:26 final size:26
Alignment explanation
Indices: 81503493--81503599 Score: 130
Period size: 25 Copynumber: 4.1 Consensus size: 26
81503483 TTATTTTTAT
81503493 TTTTTTCTTTTTTCTTC-TCTTTTTC
1 TTTTTTCTTTTTTCTTCTTCTTTTTC
81503518 TTTTTTCTTTTTTCTT-TCTCTTTTTC
1 TTTTTTCTTTTTTCTTCT-TCTTTTTC
*
81503544 TTCTTTCTTTTTTTCTTCTTTCTTTTTC
1 TTTTTTC-TTTTTTCTTC-TTCTTTTTC
* * *
81503572 TTTCTT-TTTCTTCTTCTTCTTCTTC
1 TTTTTTCTTTTTTCTTCTTCTTTTTC
81503597 TTT
1 TTT
81503600 GGGCCGAACC
Statistics
Matches: 72, Mismatches: 5, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
25 27 0.38
26 23 0.32
27 9 0.12
28 12 0.17
29 1 0.01
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (26 bp):
TTTTTTCTTTTTTCTTCTTCTTTTTC
Found at i:81503530 original size:15 final size:15
Alignment explanation
Indices: 81503486--81503580 Score: 81
Period size: 15 Copynumber: 6.3 Consensus size: 15
81503476 TGTTATATTA
*
81503486 TTTTTATTTTTTTCT
1 TTTTTCTTTTTTTCT
81503501 TTTTTCTTCTCTTTTTCT
1 TTTTTC-T-T-TTTTTCT
81503519 TTTTTC-TTTTTTC-
1 TTTTTCTTTTTTTCT
*
81503532 --TTTCTCTTTTTCT
1 TTTTTCTTTTTTTCT
*
81503545 TCTTTCTTTTTTTCT
1 TTTTTCTTTTTTTCT
*
81503560 TCTTTCTTTTTCTTTCT
1 TTTTTC-TTTT-TTTCT
81503577 TTTT
1 TTTT
81503581 CTTCTTCTTC
Statistics
Matches: 67, Mismatches: 4, Indels: 16
0.77 0.05 0.18
Matches are distributed among these distances:
11 4 0.06
12 6 0.09
14 6 0.09
15 24 0.36
16 5 0.07
17 9 0.13
18 13 0.19
ACGTcount: A:0.01, C:0.18, G:0.00, T:0.81
Consensus pattern (15 bp):
TTTTTCTTTTTTTCT
Found at i:81503545 original size:44 final size:42
Alignment explanation
Indices: 81503494--81503599 Score: 126
Period size: 41 Copynumber: 2.5 Consensus size: 42
81503484 TATTTTTATT
*
81503494 TTTTTCTTTTTTCTTCTCTTTTTCTTTTTTCTTTTTTCTTTCTC
1 TTTTTCTTTTTTCTTCT-TTTTTCTTCTTTC-TTTTTCTTTCTC
* *
81503538 TTTTTCTTCTTTC-T-TTTTTTCTTCTTTCTTTTTCTTTCTT
1 TTTTTCTTTTTTCTTCTTTTTTCTTCTTTCTTTTTCTTTCTC
81503578 TTTCTTCTTCTTCTTCTTCTTT
1 TTT-TTCTT-TT-TTCTTCTTT
81503600 GGGCCGAACC
Statistics
Matches: 53, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
40 14 0.26
41 17 0.32
42 2 0.04
43 4 0.08
44 13 0.25
45 3 0.06
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (42 bp):
TTTTTCTTTTTTCTTCTTTTTTCTTCTTTCTTTTTCTTTCTC
Found at i:81503597 original size:15 final size:15
Alignment explanation
Indices: 81503500--81503599 Score: 85
Period size: 15 Copynumber: 7.1 Consensus size: 15
81503490 TATTTTTTTC
81503500 TTTT-TTCTTC-TCT
1 TTTTCTTCTTCTTCT
81503513 TTTTCTT-TT-TTC-
1 TTTTCTTCTTCTTCT
81503525 TTTT-TTCTT-TCTCT
1 TTTTCTTCTTCT-TCT
81503539 TTTTCTTC-T-TTCT
1 TTTTCTTCTTCTTCT
81503552 TTTT-TTCTTCTTTCT
1 TTTTCTTCTTC-TTCT
*
81503567 TTTTCTTTCTTTTTCT
1 TTTTC-TTCTTCTTCT
*
81503583 TCTTCTTCTTCTTCT
1 TTTTCTTCTTCTTCT
81503598 TT
1 TT
81503600 GGGCCGAACC
Statistics
Matches: 72, Mismatches: 4, Indels: 20
0.75 0.04 0.21
Matches are distributed among these distances:
11 2 0.03
12 10 0.14
13 18 0.25
14 8 0.11
15 21 0.29
16 8 0.11
17 5 0.07
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTTCTTCTTCTTCT
Found at i:81503715 original size:14 final size:14
Alignment explanation
Indices: 81503696--81503743 Score: 64
Period size: 14 Copynumber: 3.5 Consensus size: 14
81503686 TCTTCTCCTC
81503696 TCTTTTTCTTCTTT
1 TCTTTTTCTTCTTT
81503710 TCTTTTTCTTCTTT
1 TCTTTTTCTTCTTT
*
81503724 GCTTGTTT-TT-TTT
1 TCTT-TTTCTTCTTT
81503737 TCTTTTT
1 TCTTTTT
81503744 GTTTGTTGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
12 3 0.10
13 6 0.19
14 19 0.61
15 3 0.10
ACGTcount: A:0.00, C:0.17, G:0.04, T:0.79
Consensus pattern (14 bp):
TCTTTTTCTTCTTT
Found at i:81503735 original size:20 final size:22
Alignment explanation
Indices: 81503712--81503765 Score: 71
Period size: 20 Copynumber: 2.6 Consensus size: 22
81503702 TCTTCTTTTC
81503712 TTTTTCTTCTTTGCTTGTTT-T
1 TTTTTCTTCTTTGCTTGTTTGT
*
81503733 TTTTTCTT-TTTGTTTG-TTGT
1 TTTTTCTTCTTTGCTTGTTTGT
81503753 TTTTT-TTCTTTGC
1 TTTTTCTTCTTTGC
81503766 CCTTTTTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
19 4 0.14
20 17 0.59
21 8 0.28
ACGTcount: A:0.00, C:0.11, G:0.11, T:0.78
Consensus pattern (22 bp):
TTTTTCTTCTTTGCTTGTTTGT
Found at i:81503759 original size:27 final size:27
Alignment explanation
Indices: 81503698--81503763 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 27
81503688 TTCTCCTCTC
*
81503698 TTTTTCTTCTTTTCTTTTTCTTCTTTG
1 TTTTTTTTCTTTTCTTTTTCTTCTTTG
* *
81503725 CTTGTTTTT-TTTTCTTTTTGTT-TGTTG
1 -TTTTTTTTCTTTTCTTTTTCTTCT-TTG
81503752 TTTTTTTTCTTT
1 TTTTTTTTCTTT
81503764 GCCCTTTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
26 8 0.25
27 18 0.56
28 6 0.19
ACGTcount: A:0.00, C:0.12, G:0.08, T:0.80
Consensus pattern (27 bp):
TTTTTTTTCTTTTCTTTTTCTTCTTTG
Found at i:81504323 original size:29 final size:28
Alignment explanation
Indices: 81504263--81504391 Score: 109
Period size: 29 Copynumber: 4.5 Consensus size: 28
81504253 TTTCTGGGGA
* *
81504263 AAAATGTAATTTTAGGAAAATATG-GGGCC
1 AAAATGTAATTTTA-GAAAGT-TGAGGGTC
*
81504292 AAAATGTAATTTCTAGAAAGCTGAGGGTC
1 AAAATGTAATTT-TAGAAAGTTGAGGGTC
* * *
81504321 -AAATGTAATTTTCAAAAAGTTTAGGGGC
1 AAAATGTAATTTT-AGAAAGTTGAGGGTC
* * *
81504349 TAAATGTAATTTTTGAAAAGTTGAGGGGTT
1 AAAATGTAATTTTAG-AAAGTTGA-GGGTC
81504379 AAAATGTAATTTT
1 AAAATGTAATTTT
81504392 TATTTTTTTG
Statistics
Matches: 81, Mismatches: 13, Indels: 11
0.77 0.12 0.10
Matches are distributed among these distances:
27 1 0.01
28 24 0.30
29 39 0.48
30 17 0.21
ACGTcount: A:0.39, C:0.05, G:0.22, T:0.33
Consensus pattern (28 bp):
AAAATGTAATTTTAGAAAGTTGAGGGTC
Found at i:81504751 original size:25 final size:25
Alignment explanation
Indices: 81504717--81504766 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
81504707 GCAATATGAG
81504717 TTGATTTTTGGAAAATAGAAATTAA
1 TTGATTTTTGGAAAATAGAAATTAA
81504742 TTGATTTTTGGAAAATAGAAATTAA
1 TTGATTTTTGGAAAATAGAAATTAA
81504767 AATATACCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.00, G:0.16, T:0.40
Consensus pattern (25 bp):
TTGATTTTTGGAAAATAGAAATTAA
Found at i:81504883 original size:75 final size:75
Alignment explanation
Indices: 81504746--81505451 Score: 992
Period size: 76 Copynumber: 9.3 Consensus size: 75
81504736 AATTAATTGA
* * * * *
81504746 TTTTTGGAAAATAGAAATTAAAATATACCTCAGCATGTGACCCGAAGCTCAACTCACTTCTCGCA
1 TTTTTGAAAAACAGAAATTGAAA-ATACCTCAGC--GTGACCCGAGGCTCAACTCACCTCTCGCA
81504811 ATATGAGTTGATT
63 ATATGAGTTGATT
* *
81504824 TTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCATTA
1 TTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATA
81504889 TGAGTTGATT
66 TGAGTTGATT
* * *
81504899 TTTTTTAAAAGCAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAAATCACCTCTCGCAATA
1 TTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATA
*
81504964 TGATTTGATT
66 TGAGTTGATT
* * *
81504974 TTTTTCGAAAAGCAAAAATTGAAAATACCTCAACGTGACCCGAGGCTCAACTCACCTCTCGCAAT
1 TTTTT-GAAAAACAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAAT
*
81505039 ATGAGTTG-GT
65 ATGAGTTGATT
81505049 TTTTTGAAAAACAGAAATTGAAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCA
1 TTTTTGAAAAACAGAAATTG-AAAATACCTCAGC--GTGACCCGAGGCTCAACTCACCTCTCGCA
81505114 ATATGAGTTGATT
63 ATATGAGTTGATT
* * *
81505127 TTTTTGAAAAACAGAAATAGAAAAATACCCCAG-GATGACCCGAGGCTCAACTCACCTCTCGCAT
1 TTTTTGAAAAACAGAAATTG-AAAATACCTCAGCG-TGACCCGAGGCTCAACTCACCTCTCGCAA
81505191 TATGAGTTGATT
64 TATGAGTTGATT
* * *
81505203 TTTTTGAAAAACAGAAATAGAAAAATACCCCAG-GATGACCCGAGGCTCAACTCACCTCTCGCAT
1 TTTTTGAAAAACAGAAATTG-AAAATACCTCAGCG-TGACCCGAGGCTCAACTCACCTCTCGCAA
81505267 TATGAGTTGATT
64 TATGAGTTGATT
* * * *
81505279 TTTTTGAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTTAACTCACTTCTCGCATTA
1 TTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATA
81505344 TGAGTTGA--
66 TGAGTTGATT
* * * *
81505352 TTTTTGAAAAATAGGAATTGAAAATACCTCAGGATGTGACCCAAGGCTCAACTCACCTCTCGCAA
1 TTTTTGAAAAACAGAAATTGAAAATACCTCA-G-CGTGACCCGAGGCTCAACTCACCTCTCGCAA
81505417 TATGAGTTGA-T
64 TATGAGTTGATT
81505428 TTTTTGAAAAACAGAAATTGAAAA
1 TTTTTGAAAAACAGAAATTGAAAA
81505452 ATATAATTCT
Statistics
Matches: 577, Mismatches: 41, Indels: 22
0.90 0.06 0.03
Matches are distributed among these distances:
73 28 0.05
74 14 0.02
75 215 0.37
76 219 0.38
77 49 0.08
78 52 0.09
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.28
Consensus pattern (75 bp):
TTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATA
TGAGTTGATT
Found at i:81505019 original size:151 final size:150
Alignment explanation
Indices: 81504746--81505451 Score: 992
Period size: 151 Copynumber: 4.7 Consensus size: 150
81504736 AATTAATTGA
* * * * *
81504746 TTTTTGGAAAATAGAAATTAAAATATACCTCAGCATGTGACCCGAAGCTCAACTCACTTCTCGCA
1 TTTTTGAAAAACAGAAATTGAAA-ATACCTCAGC--GTGACCCGAGGCTCAACTCACCTCTCGCA
* *
81504811 ATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTC
63 ATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGACCCGAGGCTCAACTC
81504876 ACCTCTCGCATTATGAGTTGATT
128 ACCTCTCGCATTATGAGTTGATT
* * *
81504899 TTTTTTAAAAGCAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAAATCACCTCTCGCAATA
1 TTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATA
* * *
81504964 TGATTTGATTTTTTTCGAAAAGCAAAAATTGAAAATACCTCAACGTGACCCGAGGCTCAACTCAC
66 TGAGTTGATTTTTTT-GAAAAACAGAAATTGAAAATACCTCAACGTGACCCGAGGCTCAACTCAC
* *
81505029 CTCTCGCAATATGAGTTG-GT
130 CTCTCGCATTATGAGTTGATT
81505049 TTTTTGAAAAACAGAAATTGAAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCA
1 TTTTTGAAAAACAGAAATTG-AAAATACCTCAGC--GTGACCCGAGGCTCAACTCACCTCTCGCA
* * *
81505114 ATATGAGTTGATTTTTTTGAAAAACAGAAATAGAAAAATACC-CCAGGATGACCCGAGGCTCAAC
63 ATATGAGTTGATTTTTTTGAAAAACAGAAATTG-AAAATACCTCAACG-TGACCCGAGGCTCAAC
81505178 TCACCTCTCGCATTATGAGTTGATT
126 TCACCTCTCGCATTATGAGTTGATT
* * *
81505203 TTTTTGAAAAACAGAAATAGAAAAATACCCCAG-GATGACCCGAGGCTCAACTCACCTCTCGCAT
1 TTTTTGAAAAACAGAAATTG-AAAATACCTCAGCG-TGACCCGAGGCTCAACTCACCTCTCGCAA
* * *
81505267 TATGAGTTGATTTTTTTGAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTTAACTCA
64 TATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGACCCGAGGCTCAACTCA
*
81505332 CTTCTCGCATTATGAGTTGA--
129 CCTCTCGCATTATGAGTTGATT
* * * *
81505352 TTTTTGAAAAATAGGAATTGAAAATACCTCAGGATGTGACCCAAGGCTCAACTCACCTCTCGCAA
1 TTTTTGAAAAACAGAAATTGAAAATACCTCA-G-CGTGACCCGAGGCTCAACTCACCTCTCGCAA
81505417 TATGAGTTGA-TTTTTTGAAAAACAGAAATTGAAAA
64 TATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAA
81505452 ATATAATTCT
Statistics
Matches: 498, Mismatches: 43, Indels: 28
0.88 0.08 0.05
Matches are distributed among these distances:
148 10 0.02
149 42 0.08
150 99 0.20
151 122 0.24
152 85 0.17
153 108 0.22
154 32 0.06
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.28
Consensus pattern (150 bp):
TTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATA
TGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGACCCGAGGCTCAACTCACC
TCTCGCATTATGAGTTGATT
Found at i:81517481 original size:7 final size:6
Alignment explanation
Indices: 81517465--81517515 Score: 50
Period size: 6 Copynumber: 8.2 Consensus size: 6
81517455 ATTTTCCTGC
* *
81517465 AAAAAT AAAAAT GAAAAT -AAAAT AAAATAGT AAAAAT AAATAAT AATAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAA-A-T AAAAAT AAA-AAT AAAAAT
81517515 A
1 A
81517516 TGAAATTTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
5 5 0.13
6 22 0.56
7 7 0.18
8 5 0.13
ACGTcount: A:0.75, C:0.00, G:0.04, T:0.22
Consensus pattern (6 bp):
AAAAAT
Found at i:81523687 original size:40 final size:38
Alignment explanation
Indices: 81523654--81523780 Score: 166
Period size: 37 Copynumber: 3.3 Consensus size: 38
81523644 TGAAACACGA
*
81523654 GAAATTTTTTGTTTGAAAACACGAGAATTTTGAAACACAA
1 GAAATTTTTT-TTTGAAAACACGAGAATTTTGAAA-ACAG
* * * *
81523694 TAACTTTTTTTTTGAAAACACGAAAATTTT-AAAACAT
1 GAAATTTTTTTTTGAAAACACGAGAATTTTGAAAACAG
81523731 GAAATTTTTTTTTGAAAACACGAGAATTTTTCGAAAACAG
1 GAAATTTTTTTTTGAAAACACGAGAA-TTTT-GAAAACAG
81523771 GAAATTTTTT
1 GAAATTTTTT
81523781 GAAACATGAA
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
37 26 0.34
38 7 0.09
39 19 0.25
40 24 0.32
ACGTcount: A:0.41, C:0.09, G:0.12, T:0.38
Consensus pattern (38 bp):
GAAATTTTTTTTTGAAAACACGAGAATTTTGAAAACAG
Found at i:81523739 original size:16 final size:17
Alignment explanation
Indices: 81523702--81523963 Score: 88
Period size: 17 Copynumber: 14.5 Consensus size: 17
81523692 AATAACTTTT
81523702 TTTTTGAAAACACGAAA
1 TTTTTGAAAACACGAAA
* *
81523719 ATTTT-AAAACATGAAA
1 TTTTTGAAAACACGAAA
81523735 TTTTTTTTTGAAAACACGAGAA
1 ----TTTTTGAAAACACGA-AA
*
81523757 TTTTTCGAAAACAGGAAA
1 TTTTT-GAAAACACGAAA
* *
81523775 TTTTTTG-AAACATGAACTTT
1 -TTTTTGAAAACACGAA---A
*
81523795 TTTTTGAAAACACAAAAA
1 TTTTTGAAAACAC-GAAA
* *
81523813 TTTATG-AAACGCGAGAA
1 TTTTTGAAAACACGA-AA
*
81523830 TTTTTTTTTGAAAACTC-AAA
1 ----TTTTTGAAAACACGAAA
*** * *
81523850 TTTTT-TTTACGCAAAAA
1 TTTTTGAAAACAC-GAAA
* *
81523867 TTGTTGAAAACACGAATT
1 TTTTTGAAAACACGAA-A
* *
81523885 TTTTTG-GAACACGAATT
1 TTTTTGAAAACACGAA-A
81523902 TTTTTGAAAACACGGAAA
1 TTTTTGAAAACAC-GAAA
* *
81523920 TTTCTGAAATAC-CGGAA
1 TTTTTGAAA-ACACGAAA
*
81523937 TTTTTGAAAACACAAAGA
1 TTTTTGAAAACACGAA-A
81523955 TTTTTGAAA
1 TTTTTGAAA
81523964 CATGAATTTT
Statistics
Matches: 182, Mismatches: 35, Indels: 55
0.67 0.13 0.20
Matches are distributed among these distances:
15 3 0.02
16 18 0.10
17 57 0.31
18 45 0.25
19 25 0.14
20 11 0.06
21 16 0.09
22 7 0.04
ACGTcount: A:0.41, C:0.11, G:0.13, T:0.36
Consensus pattern (17 bp):
TTTTTGAAAACACGAAA
Found at i:81523779 original size:39 final size:38
Alignment explanation
Indices: 81523643--81523780 Score: 170
Period size: 40 Copynumber: 3.5 Consensus size: 38
81523633 CGTGATCCGA
*
81523643 TTGAAACACGAGAAATTTTTTGTTTGAAAACACGAGAATT
1 TTGAAA-ACAAGAAATTTTTT-TTTGAAAACACGAGAATT
* * *
81523683 TTGAAACACAATAACTTTTTTTTTGAAAACACGAAAATT
1 TTGAAA-ACAAGAAATTTTTTTTTGAAAACACGAGAATT
*
81523722 TT-AAAACATGAAATTTTTTTTTGAAAACACGAGAATTT
1 TTGAAAACAAGAAATTTTTTTTTGAAAACACGAGAA-TT
*
81523760 TTCGAAAACAGGAAATTTTTT
1 TT-GAAAACAAGAAATTTTTT
81523781 GAAACATGAA
Statistics
Matches: 86, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
37 26 0.30
38 7 0.08
39 19 0.22
40 34 0.40
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.36
Consensus pattern (38 bp):
TTGAAAACAAGAAATTTTTTTTTGAAAACACGAGAATT
Found at i:81523796 original size:56 final size:56
Alignment explanation
Indices: 81523701--81523807 Score: 153
Period size: 56 Copynumber: 1.9 Consensus size: 56
81523691 CAATAACTTT
* *
81523701 TTTTTTGAAAACACGAAAATTTTAAAACATGAAATTTTTTTTTGAAAACACGAGAA
1 TTTTTCGAAAACACGAAAATTTTAAAACATGAAACTTTTTTTTGAAAACACGAGAA
* * *
81523757 TTTTTCGAAAACAGGAAATTTTTTGAAACATG-AACTTTTTTTTGAAAACAC
1 TTTTTCGAAAACACGAAA-ATTTTAAAACATGAAACTTTTTTTTGAAAACAC
81523808 AAAAATTTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
56 34 0.76
57 11 0.24
ACGTcount: A:0.41, C:0.10, G:0.11, T:0.37
Consensus pattern (56 bp):
TTTTTCGAAAACACGAAAATTTTAAAACATGAAACTTTTTTTTGAAAACACGAGAA
Found at i:81523836 original size:56 final size:57
Alignment explanation
Indices: 81523707--81523821 Score: 146
Period size: 56 Copynumber: 2.1 Consensus size: 57
81523697 CTTTTTTTTT
* * * * * *
81523707 GAAAACACGAAA-ATTTTAAAACATGAAATTTTTTTTTGAAAACACGAGAATTTTTC
1 GAAAACAGGAAATTTTTTAAAACATGAAACTTTTTTTTGAAAACACAAAAATTTATC
*
81523763 GAAAACAGGAAATTTTTTGAAACATG-AACTTTTTTTTGAAAACACAAAAATTTAT-
1 GAAAACAGGAAATTTTTTAAAACATGAAACTTTTTTTTGAAAACACAAAAATTTATC
81523818 GAAA
1 GAAA
81523822 CGCGAGAATT
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
55 4 0.08
56 36 0.71
57 11 0.22
ACGTcount: A:0.46, C:0.10, G:0.11, T:0.33
Consensus pattern (57 bp):
GAAAACAGGAAATTTTTTAAAACATGAAACTTTTTTTTGAAAACACAAAAATTTATC
Found at i:81523944 original size:17 final size:18
Alignment explanation
Indices: 81523864--81523963 Score: 68
Period size: 18 Copynumber: 5.7 Consensus size: 18
81523854 TTTTACGCAA
*
81523864 AAATTGTTGAAAACAC-G
1 AAATTTTTGAAAACACGG
* *
81523881 AATTTTTTTG-GAACAC-G
1 AA-ATTTTTGAAAACACGG
*
81523898 AATTTTTTTGAAAACACGG
1 AA-ATTTTTGAAAACACGG
*
81523917 AAATTTCTGAAATAC-CGG
1 AAATTTTTGAAA-ACACGG
*
81523935 -AATTTTTGAAAACAC-A
1 AAATTTTTGAAAACACGG
81523951 AAGATTTTTGAAA
1 AA-ATTTTTGAAA
81523964 CATGAATTTT
Statistics
Matches: 68, Mismatches: 8, Indels: 13
0.76 0.09 0.15
Matches are distributed among these distances:
16 2 0.03
17 30 0.44
18 31 0.46
19 5 0.07
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.33
Consensus pattern (18 bp):
AAATTTTTGAAAACACGG
Found at i:81524728 original size:6 final size:6
Alignment explanation
Indices: 81524719--81524773 Score: 53
Period size: 6 Copynumber: 9.5 Consensus size: 6
81524709 ATTTTTATTT
* *
81524719 TTTTTC TTTTT- TCTTTC TTCTTTC TTTTTC --TTTC TTTTTC TTCTTC
1 TTTTTC TTTTTC TTTTTC TT-TTTC TTTTTC TTTTTC TTTTTC TTTTTC
*
81524765 TTCTTC TTT
1 TTTTTC TTT
81524774 GGGCCGAACC
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
4 4 0.10
5 4 0.10
6 27 0.66
7 6 0.15
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (6 bp):
TTTTTC
Found at i:81524916 original size:22 final size:22
Alignment explanation
Indices: 81524872--81524928 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
81524862 TTCTCTTTTA
*
81524872 TTTTTCTTCTTTGCTTGTTTTT
1 TTTTTCTTCTTTGCTTGTATTT
*
81524894 TTTTTCTT-TTTGTTTGCTATTT
1 TTTTTCTTCTTTGCTTG-TATTT
*
81524916 TTTTT-GTCTTTGC
1 TTTTTCTTCTTTGC
81524929 CCTTTTTTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
21 8 0.28
22 21 0.72
ACGTcount: A:0.02, C:0.12, G:0.11, T:0.75
Consensus pattern (22 bp):
TTTTTCTTCTTTGCTTGTATTT
Found at i:81525501 original size:30 final size:30
Alignment explanation
Indices: 81525424--81525533 Score: 116
Period size: 30 Copynumber: 3.7 Consensus size: 30
81525414 AGGAAAATAT
* *
81525424 GGGGCCAAAATGTAATTTTTAGAAAGTTGA
1 GGGGCTAAAATGTAATTTTTAAAAAGTTGA
* * *
81525454 -GGGTTAAAATGTCATTTTTAAAAAGTTTA
1 GGGGCTAAAATGTAATTTTTAAAAAGTTGA
* *
81525483 GGGGCTAAAATATAATTTTTGAAAAGTTGA
1 GGGGCTAAAATGTAATTTTTAAAAAGTTGA
* *
81525513 GAGG-TCAAAATGTACTTTTTA
1 GGGGCT-AAAATGTAATTTTTA
81525534 TTTTTTGTAT
Statistics
Matches: 64, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
29 25 0.39
30 39 0.61
ACGTcount: A:0.37, C:0.05, G:0.22, T:0.35
Consensus pattern (30 bp):
GGGGCTAAAATGTAATTTTTAAAAAGTTGA
Found at i:81533298 original size:30 final size:30
Alignment explanation
Indices: 81533255--81533312 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
81533245 AGGTGGGATG
* *
81533255 GGAATGAAATAAAAGTTTTAGGGGAAAAGT
1 GGAAGGAAATAAAAATTTTAGGGGAAAAGT
* *
81533285 GGAAGGAAGTAAAAATTTTGGGGGAAAA
1 GGAAGGAAATAAAAATTTTAGGGGAAAA
81533313 TAAAATGTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.47, C:0.00, G:0.33, T:0.21
Consensus pattern (30 bp):
GGAAGGAAATAAAAATTTTAGGGGAAAAGT
Found at i:81534019 original size:9 final size:9
Alignment explanation
Indices: 81534002--81534038 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
81533992 TGAGTTTTCG
81534002 AATTCGAAT
1 AATTCGAAT
*
81534011 AACTCGAAT
1 AATTCGAAT
81534020 AATTCGAAT
1 AATTCGAAT
81534029 AATTCGAAT
1 AATTCGAAT
81534038 A
1 A
81534039 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:81540262 original size:372 final size:372
Alignment explanation
Indices: 81539572--81540307 Score: 1330
Period size: 372 Copynumber: 2.0 Consensus size: 372
81539562 AAGGGAAGTG
* * *
81539572 GGAAATGTACCATGCAATTCACAATCTTCAAGAGAGAGATATGTTAAAGCAGATAAATTTGCCAA
1 GGAAATGAACCATGCAATTCACAAGCGTCAAGAGAGAGATATGTTAAAGCAGATAAATTTGCCAA
*
81539637 ACTCTGAGGGATTGTTGAAGATACATTTACCATGTCAAGATCAAGAATCTTGAGGTTCAATAACC
66 ACTCTGAGGGATTGTCGAAGATACATTTACCATGTCAAGATCAAGAATCTTGAGGTTCAATAACC
* *
81539702 TCTCGGATAAACTTTTCAAACTTGGGTTTCGGAGCTCTAATGGATTCCCAGAGAGATCAAGTCTC
131 TCTCGGATAAACTTTTCAAACTTGGGTTTCGGAGCTCTAATCGATTCCCAGAGAGATCAAGTATC
**
81539767 ACCAGGTTTGAAAGCTGTAGAACTTCATATGGAATTTGACCTGTAAAGCCAGACGAGGAGAGGTC
196 ACCAGGTTTGAAAGCAATAGAACTTCATATGGAATTTGACCTGTAAAGCCAGACGAGGAGAGGTC
*
81539832 CAACCGTGATAGCCTTGTAAGGTTAGCAATTGCAGAAGGGATTTCAGAGCCGTTGAAGTCATTGT
261 CAACCGTGATAGCCTTGTAAGGTTACCAATTGCAGAAGGGATTTCAGAGCCGTTGAAGTCATTGT
81539897 CCGAAAGGCTGAGCCTTCTAAGGTGATGGAGCTGGAAAACTTCAATA
326 CCGAAAGGCTGAGCCTTCTAAGGTGATGGAGCTGGAAAACTTCAATA
81539944 GGAAATGAACCATGCAATTCACAAGCGTCAAGAGAGAGATATGTTAAAGCAGATAAATTTGCCAA
1 GGAAATGAACCATGCAATTCACAAGCGTCAAGAGAGAGATATGTTAAAGCAGATAAATTTGCCAA
*
81540009 ACTCTGAGGGATTGTCGACGATACATTTACCATGTCAAGATCAAGAATCTTGAGGTTCAATAACC
66 ACTCTGAGGGATTGTCGAAGATACATTTACCATGTCAAGATCAAGAATCTTGAGGTTCAATAACC
* *
81540074 TCTCGGATAAACTTTTCAAGCTTGGGTTTCGGAGCTCTAATCGATTCCTAGAGAGATCAAGTATC
131 TCTCGGATAAACTTTTCAAACTTGGGTTTCGGAGCTCTAATCGATTCCCAGAGAGATCAAGTATC
81540139 ACCAGGTTTGAAAGCAATAGAACTTCATATGGAATTTGACCTGTAAAGCCAGACGAGGAGAGGTC
196 ACCAGGTTTGAAAGCAATAGAACTTCATATGGAATTTGACCTGTAAAGCCAGACGAGGAGAGGTC
*
81540204 CAACCGTGATAGCCTTGTAAGGTTACCAATTGCAGAAGGGATTTCAGAG-CGATTGAAGTTATTG
261 CAACCGTGATAGCCTTGTAAGGTTACCAATTGCAGAAGGGATTTCAGAGCCG-TTGAAGTCATTG
*
81540268 TCCGAAAGGTTGAGCCTTCTAAGGTGATGGAGCTGGAAAA
325 TCCGAAAGGCTGAGCCTTCTAAGGTGATGGAGCTGGAAAA
81540308 GGCTGTTGTT
Statistics
Matches: 349, Mismatches: 14, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
371 2 0.01
372 347 0.99
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.26
Consensus pattern (372 bp):
GGAAATGAACCATGCAATTCACAAGCGTCAAGAGAGAGATATGTTAAAGCAGATAAATTTGCCAA
ACTCTGAGGGATTGTCGAAGATACATTTACCATGTCAAGATCAAGAATCTTGAGGTTCAATAACC
TCTCGGATAAACTTTTCAAACTTGGGTTTCGGAGCTCTAATCGATTCCCAGAGAGATCAAGTATC
ACCAGGTTTGAAAGCAATAGAACTTCATATGGAATTTGACCTGTAAAGCCAGACGAGGAGAGGTC
CAACCGTGATAGCCTTGTAAGGTTACCAATTGCAGAAGGGATTTCAGAGCCGTTGAAGTCATTGT
CCGAAAGGCTGAGCCTTCTAAGGTGATGGAGCTGGAAAACTTCAATA
Found at i:81540734 original size:12 final size:12
Alignment explanation
Indices: 81540717--81540745 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
81540707 AATCAAGTTG
81540717 TGTATATGCGTA
1 TGTATATGCGTA
81540729 TGTATATGCGTA
1 TGTATATGCGTA
81540741 TGTAT
1 TGTAT
81540746 GCATCATTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.24, C:0.07, G:0.24, T:0.45
Consensus pattern (12 bp):
TGTATATGCGTA
Found at i:81543115 original size:79 final size:79
Alignment explanation
Indices: 81543023--81543173 Score: 203
Period size: 79 Copynumber: 1.9 Consensus size: 79
81543013 ATGCATAGTT
* * * * ** *
81543023 ATAAATCAAAATCAGTAACAATTAGTCTAACATATTCAGATATTGTGTATTCCTCATCAACAAAG
1 ATAAATCAAAATCAGTAACAATCAATCTAACATAATCAAATATCATATATTCCTCATCAACAAAG
81543088 TAACGTAAAGGGTC
66 TAACGTAAAGGGTC
* * * *
81543102 ATAAATCAGAATCAGTAACAATCAATTTAACATAATCAAATGTCATATATTCTTCATCAACAAAG
1 ATAAATCAAAATCAGTAACAATCAATCTAACATAATCAAATATCATATATTCCTCATCAACAAAG
81543167 TAACGTA
66 TAACGTA
81543174 GAGATGTATC
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
79 61 1.00
ACGTcount: A:0.44, C:0.17, G:0.10, T:0.29
Consensus pattern (79 bp):
ATAAATCAAAATCAGTAACAATCAATCTAACATAATCAAATATCATATATTCCTCATCAACAAAG
TAACGTAAAGGGTC
Found at i:81548941 original size:21 final size:21
Alignment explanation
Indices: 81548915--81548964 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
81548905 GGTCTACAAG
81548915 CCCGTGTGTGAGCTACACACA
1 CCCGTGTGTGAGCTACACACA
*
81548936 CCCGTGTCTGAGCTACACACA
1 CCCGTGTGTGAGCTACACACA
*
81548957 TCCGTGTG
1 CCCGTGTG
81548965 AAGGGGATAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.20, C:0.34, G:0.24, T:0.22
Consensus pattern (21 bp):
CCCGTGTGTGAGCTACACACA
Found at i:81550474 original size:13 final size:13
Alignment explanation
Indices: 81550456--81550506 Score: 75
Period size: 13 Copynumber: 3.9 Consensus size: 13
81550446 AGTTCTTCAT
81550456 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
81550469 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* * *
81550482 TGCTGTGGAGAAG
1 TGCTTTTGAAAAG
81550495 TGCTTTTGAAAA
1 TGCTTTTGAAAA
81550507 TTTTGAGTGT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 32 1.00
ACGTcount: A:0.29, C:0.08, G:0.27, T:0.35
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:81551246 original size:323 final size:323
Alignment explanation
Indices: 81550658--81551303 Score: 1274
Period size: 323 Copynumber: 2.0 Consensus size: 323
81550648 AAAAAAAATT
81550658 ATTATAACTTATTATTAATATTTTAATATATAATATTAATTTTAAATATTTCTAAGTAATTAAAA
1 ATTATAACTTATTATTAATATTTTAATATATAATATTAATTTTAAATATTTCTAAGTAATTAAAA
81550723 TTATTTATTTATTAAATTTAATTAGAATATATAACCTATATTTAAATATTTAAATATAATAATTA
66 TTATTTATTTATTAAATTTAATTAGAATATATAACCTATATTTAAATATTTAAATATAATAATTA
* *
81550788 AATATTTGTAATTAGATATTGACACATTTTCTAATAAAAGTATTTGCGCGCATAGCGCATACTAC
131 AATATTTGTAATTAGATATTGACACATTGTCTAATAAAAGTATTCGCGCGCATAGCGCATACTAC
81550853 TTTTTAATACCATATAAAAGTAAGGTTAAATACTACTCAACAATTTAATATACCATATATATTTT
196 TTTTTAATACCATATAAAAGTAAGGTTAAATACTACTCAACAATTTAATATACCATATATATTTT
81550918 TAGAAATAAATAAATTGCCATTAAAAGAAAGGCTACCCACGCTTGGTTATACAAATAAAGCAA
261 TAGAAATAAATAAATTGCCATTAAAAGAAAGGCTACCCACGCTTGGTTATACAAATAAAGCAA
81550981 ATTATAACTTATTATTAATATTTTAATATATAATATTAATTTTAAATATTTCTAAGTAATTAAAA
1 ATTATAACTTATTATTAATATTTTAATATATAATATTAATTTTAAATATTTCTAAGTAATTAAAA
81551046 TTATTTATTTATTAAATTTAATTAGAATATATAACCTATATTTAAATATTTAAATATAATAATTA
66 TTATTTATTTATTAAATTTAATTAGAATATATAACCTATATTTAAATATTTAAATATAATAATTA
81551111 AATATTTGTAATTAGATATTGACACATTGTCTAATAAAAGTATTCGCGCGCATAGCGCATACTAC
131 AATATTTGTAATTAGATATTGACACATTGTCTAATAAAAGTATTCGCGCGCATAGCGCATACTAC
81551176 TTTTTAATACCATATAAAAGTAAGGTTAAATACTACTCAACAATTTAATATACCATATATATTTT
196 TTTTTAATACCATATAAAAGTAAGGTTAAATACTACTCAACAATTTAATATACCATATATATTTT
81551241 TAGAAATAAATAAATTGCCATTAAAAGAAAGGCTACCCACGCTTGGTTATACAAATAAAGCAA
261 TAGAAATAAATAAATTGCCATTAAAAGAAAGGCTACCCACGCTTGGTTATACAAATAAAGCAA
81551304 TTCCTAAAAG
Statistics
Matches: 321, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
323 321 1.00
ACGTcount: A:0.44, C:0.10, G:0.07, T:0.39
Consensus pattern (323 bp):
ATTATAACTTATTATTAATATTTTAATATATAATATTAATTTTAAATATTTCTAAGTAATTAAAA
TTATTTATTTATTAAATTTAATTAGAATATATAACCTATATTTAAATATTTAAATATAATAATTA
AATATTTGTAATTAGATATTGACACATTGTCTAATAAAAGTATTCGCGCGCATAGCGCATACTAC
TTTTTAATACCATATAAAAGTAAGGTTAAATACTACTCAACAATTTAATATACCATATATATTTT
TAGAAATAAATAAATTGCCATTAAAAGAAAGGCTACCCACGCTTGGTTATACAAATAAAGCAA
Found at i:81562265 original size:30 final size:30
Alignment explanation
Indices: 81562229--81562289 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
81562219 ACGGGCACGG
81562229 ACACGATCGTGTGTCCCTATTTCGAATGTT
1 ACACGATCGTGTGTCCCTATTTCGAATGTT
* *
81562259 ACACGATCGTGTTTCCCTATTTTGAATGTT
1 ACACGATCGTGTGTCCCTATTTCGAATGTT
81562289 A
1 A
81562290 TACGGCTTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.21, C:0.21, G:0.18, T:0.39
Consensus pattern (30 bp):
ACACGATCGTGTGTCCCTATTTCGAATGTT
Found at i:81563543 original size:21 final size:21
Alignment explanation
Indices: 81563517--81563571 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
81563507 AACAGCGGTG
*
81563517 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGGTACTGTA
*
81563538 GCGGTGAGATTGGGTACTGTA
1 GCGGTGAGATTAGGTACTGTA
*
81563559 GTGGTGAGATTAG
1 GCGGTGAGATTAG
81563572 AAACAATGGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.22, C:0.07, G:0.40, T:0.31
Consensus pattern (21 bp):
GCGGTGAGATTAGGTACTGTA
Found at i:81563885 original size:22 final size:22
Alignment explanation
Indices: 81563834--81563885 Score: 52
Period size: 22 Copynumber: 2.3 Consensus size: 22
81563824 TTTTATAGTT
*
81563834 ATAATTAAATATTTTTTATAACA
1 ATAA-TAAATATTATTTATAACA
* *
81563857 ATGATAAATATTATTT-TCACAA
1 ATAATAAATATTATTTATAAC-A
81563879 ATAATAA
1 ATAATAA
81563886 CATTATACTT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
21 3 0.12
22 18 0.75
23 3 0.12
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (22 bp):
ATAATAAATATTATTTATAACA
Found at i:81566835 original size:14 final size:14
Alignment explanation
Indices: 81566818--81566844 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
81566808 AATTCTCTCT
81566818 CTTTTTTTCTGATA
1 CTTTTTTTCTGATA
81566832 CTTTTTTTCTGAT
1 CTTTTTTTCTGAT
81566845 TATTTGAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.11, C:0.15, G:0.07, T:0.67
Consensus pattern (14 bp):
CTTTTTTTCTGATA
Found at i:81572346 original size:21 final size:22
Alignment explanation
Indices: 81572296--81572346 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 22
81572286 ATATATATAT
* *
81572296 ATATTAATTATTTTTTTAAGAA
1 ATATTATTTATTTTTGTAAGAA
* *
81572318 A-ATAATTTCTTTTTGTAA-AA
1 ATATTATTTATTTTTGTAAGAA
81572338 ATATTATTT
1 ATATTATTT
81572347 TTATTTCCAT
Statistics
Matches: 23, Mismatches: 5, Indels: 3
0.74 0.16 0.10
Matches are distributed among these distances:
20 3 0.13
21 19 0.83
22 1 0.04
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.55
Consensus pattern (22 bp):
ATATTATTTATTTTTGTAAGAA
Found at i:81572777 original size:24 final size:26
Alignment explanation
Indices: 81572746--81572814 Score: 104
Period size: 26 Copynumber: 2.7 Consensus size: 26
81572736 ATTATATATT
81572746 AAATATATTTTTTAATTTTTAATCAA
1 AAATATATTTTTTAATTTTTAATCAA
*
81572772 AAATATATTTTTTTATTTTTAATCAA
1 AAATATATTTTTTAATTTTTAATCAA
* *
81572798 ATATATA-TATTTAATTT
1 AAATATATTTTTTAATTT
81572815 ATATTTAATA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
25 8 0.21
26 31 0.79
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.57
Consensus pattern (26 bp):
AAATATATTTTTTAATTTTTAATCAA
Found at i:81574019 original size:4 final size:4
Alignment explanation
Indices: 81574010--81574047 Score: 76
Period size: 4 Copynumber: 9.5 Consensus size: 4
81574000 TGAGGTCTCT
81574010 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TT
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TT
81574048 CACATACAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 34 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTC
Found at i:81582619 original size:22 final size:21
Alignment explanation
Indices: 81582539--81582659 Score: 54
Period size: 25 Copynumber: 5.3 Consensus size: 21
81582529 AGATATTGTG
81582539 ATAATTATACATTTAAAAATAATT
1 ATAATT-TA-ATTT-AAAATAATT
81582563 ATAATTTAA--TAAAAT--TT
1 ATAATTTAATTTAAAATAATT
*
81582580 GTAATAATTACACGTTTAGAAATAATT
1 ATAAT--TTA-A--TTTA-AAATAATT
81582607 ATAATTTAATTTACAAATATTACTT
1 ATAATTTAATTTA-AAATA--A-TT
*
81582632 AAAATTTTTAA-TTAAAATAATT
1 ATAA--TTTAATTTAAAATAATT
81582654 ATAATT
1 ATAATT
81582660 GAAGTAAAAG
Statistics
Matches: 77, Mismatches: 5, Indels: 34
0.66 0.04 0.29
Matches are distributed among these distances:
17 6 0.08
19 8 0.10
20 4 0.05
22 15 0.19
23 3 0.04
24 10 0.13
25 17 0.22
26 3 0.04
27 11 0.14
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (21 bp):
ATAATTTAATTTAAAATAATT
Found at i:81583122 original size:31 final size:29
Alignment explanation
Indices: 81583084--81583153 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 29
81583074 ACTATTAAAA
* *
81583084 TAGTCACTTTTGTTTGTCTAAGGTTACATTT
1 TAGTCACTTATGTTTG--AAAGGTTACATTT
* *
81583115 TAGTCACTTATGTTTGAAATGTTACGTTT
1 TAGTCACTTATGTTTGAAAGGTTACATTT
81583144 TAGTCACTTA
1 TAGTCACTTA
81583154 CGCTATCCTG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 20 0.57
31 15 0.43
ACGTcount: A:0.23, C:0.13, G:0.16, T:0.49
Consensus pattern (29 bp):
TAGTCACTTATGTTTGAAAGGTTACATTT
Found at i:81583459 original size:20 final size:20
Alignment explanation
Indices: 81583438--81583474 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
81583428 TTCTTTTTCT
81583438 TTTTCTTTTTCT-TCTTCCC
1 TTTTCTTTTTCTCTCTTCCC
*
81583457 TTTTGTTTTTCTCTCTTC
1 TTTTCTTTTTCTCTCTTC
81583475 TCATATTCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 11 0.69
20 5 0.31
ACGTcount: A:0.00, C:0.27, G:0.03, T:0.70
Consensus pattern (20 bp):
TTTTCTTTTTCTCTCTTCCC
Found at i:81584616 original size:15 final size:15
Alignment explanation
Indices: 81584596--81584624 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
81584586 TACTCTAATA
81584596 AAAATTCGTTCAAAT
1 AAAATTCGTTCAAAT
81584611 AAAATTCGTTCAAA
1 AAAATTCGTTCAAA
81584625 GTACACATCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.14, G:0.07, T:0.31
Consensus pattern (15 bp):
AAAATTCGTTCAAAT
Found at i:81588133 original size:19 final size:19
Alignment explanation
Indices: 81588109--81588145 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
81588099 TTAATAGAAA
81588109 TTAAA-TTATTCTAATTTCT
1 TTAAATTTATTC-AATTTCT
81588128 TTAAATTTATTCAATTTC
1 TTAAATTTATTCAATTTC
81588146 GAAATCACCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.32, C:0.11, G:0.00, T:0.57
Consensus pattern (19 bp):
TTAAATTTATTCAATTTCT
Found at i:81589766 original size:20 final size:20
Alignment explanation
Indices: 81589730--81589767 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
81589720 ATGAGATTTG
*
81589730 TAAAATAATATAAATATGTT
1 TAAAATAATAAAAATATGTT
81589750 TAAAA-AATAAAATATATG
1 TAAAATAATAAAA-ATATG
81589768 CCATAAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 6 0.38
20 10 0.62
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (20 bp):
TAAAATAATAAAAATATGTT
Found at i:81590166 original size:14 final size:14
Alignment explanation
Indices: 81590143--81590177 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
81590133 ATTAAAAGAT
81590143 TTAATTATGTT-AA
1 TTAATTATGTTAAA
81590156 TTAACTTATGTTAAA
1 TTAA-TTATGTTAAA
81590171 TTAATTA
1 TTAATTA
81590178 ATCTAAGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 4 0.20
14 10 0.50
15 6 0.30
ACGTcount: A:0.40, C:0.03, G:0.06, T:0.51
Consensus pattern (14 bp):
TTAATTATGTTAAA
Found at i:81590917 original size:4 final size:4
Alignment explanation
Indices: 81590908--81590972 Score: 94
Period size: 4 Copynumber: 16.2 Consensus size: 4
81590898 TGATTTCTTT
* * * *
81590908 TGTA TGTA TGTA TGTG TGTG TGTG TGTA TGTA TATA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
81590956 TGTA TGTA TGTA TGTA T
1 TGTA TGTA TGTA TGTA T
81590973 TGGCATGAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 57 1.00
ACGTcount: A:0.22, C:0.00, G:0.28, T:0.51
Consensus pattern (4 bp):
TGTA
Found at i:81591561 original size:41 final size:43
Alignment explanation
Indices: 81591516--81591609 Score: 113
Period size: 44 Copynumber: 2.2 Consensus size: 43
81591506 ATATAATAAT
* *
81591516 AATTATATTAAGAATGTTATT-AATTA-TA-TATTATTTTATTA
1 AATTATATTAA-AATATGATTAAATTATTATTATTATTTTATTA
*
81591557 AATTATATTAAAATATGATTAAATTATTTATTTTTATTTTATTA
1 AATTATATTAAAATATGATTAAATTA-TTATTATTATTTTATTA
*
81591601 AAATATATT
1 AATTATATT
81591610 TCACCATAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
40 7 0.16
41 16 0.36
43 2 0.04
44 20 0.44
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (43 bp):
AATTATATTAAAATATGATTAAATTATTATTATTATTTTATTA
Found at i:81593103 original size:97 final size:96
Alignment explanation
Indices: 81592928--81593217 Score: 365
Period size: 97 Copynumber: 3.0 Consensus size: 96
81592918 AAATAAGGGT
* * * * * *
81592928 TTAGTGTTTAAGGTTTCTTAATTAAATTAATTATAAATTTTT-CAAAATTAGA-TAAGGGTTTCG
1 TTAGAGTTTAGGGTTACTTAAGTAAATTAATTATAAATTTTTAAAAAATTAGATTAA-GGTTTAG
* *
81592991 TGTTTATGGTTTTTAAGGAAAAATTAAATAAA
65 TGTTTAGGGTTTTTAAGGAAAAATAAAATAAA
*
81593023 TTAGAGTTTAGGGTTACTTAAGTAAATTGATTATAAATTTTTTAAAAAATTAGATTAAGGTTTAG
1 TTAGAGTTTAGGGTTACTTAAGTAAATTAATTATAAA-TTTTTAAAAAATTAGATTAAGGTTTAG
*
81593088 TGTTAAGGGTTTTTAAGGAAAAATAAAATAAA
65 TGTTTAGGGTTTTTAAGGAAAAATAAAATAAA
* * * *
81593120 TTA-AGGTTTAGGGTTACTTGAGTAAATTAATTATAAA--TTAAAAAAAATAGATTAGGGTTTAG
1 TTAGA-GTTTAGGGTTACTTAAGTAAATTAATTATAAATTTTTAAAAAATTAGATTAAGGTTTAG
* *
81593182 TATTTAGGGTTTTTAAGGAAAAAATCAAATAAA
65 TGTTTAGGGTTTTTAAGG-AAAAATAAAATAAA
81593215 TTA
1 TTA
81593218 AGGTTTGGGG
Statistics
Matches: 172, Mismatches: 18, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
94 38 0.22
95 48 0.28
96 6 0.03
97 77 0.45
98 3 0.02
ACGTcount: A:0.41, C:0.02, G:0.17, T:0.40
Consensus pattern (96 bp):
TTAGAGTTTAGGGTTACTTAAGTAAATTAATTATAAATTTTTAAAAAATTAGATTAAGGTTTAGT
GTTTAGGGTTTTTAAGGAAAAATAAAATAAA
Found at i:81593266 original size:102 final size:95
Alignment explanation
Indices: 81592933--81593267 Score: 359
Period size: 97 Copynumber: 3.4 Consensus size: 95
81592923 AGGGTTTAGT
* * * ** * * *
81592933 GTTTAAGGTTTCTTAATTAAATTAATTATAAATTTTTCAAAATTAGATAAGGGTTTCGTGTTTAT
1 GTTTAGGGTTACTTAAGTAAATTAATTATAAA-TTTAAAAAATTAGATTAGGGTTTAGTGTTTAG
* *
81592998 GGTTTTTAAGGAAAAATTAAATAAATT-AGA
65 GGTTTTTAAGGAAAAATCAAATAAATTAAGG
* * *
81593028 GTTTAGGGTTACTTAAGTAAATTGATTATAAATTTTTTAAAAAATTAGATTAAGGTTTAGTGTTA
1 GTTTAGGGTTACTTAAGTAAATTAATTATAAA---TTTAAAAAATTAGATTAGGGTTTAGTGTTT
*
81593093 AGGGTTTTTAAGGAAAAATAAAATAAATTAA-G
63 AGGGTTTTTAAGGAAAAATCAAATAAATTAAGG
* * * *
81593125 GTTTAGGGTTACTTGAGTAAATTAATTATAAATTAAAAAAAATAGATTAGGGTTTAGTATTTAGG
1 GTTTAGGGTTACTTAAGTAAATTAATTATAAATTTAAAAAATTAGATTAGGGTTTAGTGTTTAGG
81593190 GTTTTTAAGGAAAAAATCAAATAAATTAAGGTTTGGG
66 GTTTTTAAGG-AAAAATCAAATAAATTAA------GG
* * * *
81593227 GTTTAGGGTTACTTAATTAAATTATTTGTTAATTTAAAAAA
1 GTTTAGGGTTACTTAAGTAAATTAATTATAAATTTAAAAAA
81593268 GCTCTCACGT
Statistics
Matches: 202, Mismatches: 27, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
94 38 0.19
95 45 0.22
97 82 0.41
98 1 0.00
102 36 0.18
ACGTcount: A:0.41, C:0.02, G:0.17, T:0.40
Consensus pattern (95 bp):
GTTTAGGGTTACTTAAGTAAATTAATTATAAATTTAAAAAATTAGATTAGGGTTTAGTGTTTAGG
GTTTTTAAGGAAAAATCAAATAAATTAAGG
Found at i:81593492 original size:126 final size:126
Alignment explanation
Indices: 81593266--81593557 Score: 415
Period size: 126 Copynumber: 2.3 Consensus size: 126
81593256 TAATTTAAAA
* * * *
81593266 AAGCTCTCACGTGGAAGCTCTTTTGCTATAGTAGCTCCTAAAAAAATAATTTGGAGAAGACGTTC
1 AAGCTCCCACATGGAAGCTCTTTTGCTACAGTAGTTCCTAAAAAAATAATTTGGAGAAGACGTTC
* *
81593331 CTGAGCAAATAGTGTCAAAAACGCTTTAAGTAGGATGTTTTATCAGCAAAAGTACTGAAAG
66 CTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTATCAGCAAAAGTACTGAAAG
* * * * * * *
81593392 AAGCTCCCACATGGACGCTCTTTTGCTACAGTAGTTTCTGAAAAGATAATTTTGAGAAGATGTTT
1 AAGCTCCCACATGGAAGCTCTTTTGCTACAGTAGTTCCTAAAAAAATAATTTGGAGAAGACGTTC
*
81593457 CTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAAAAGTACTGAAAG
66 CTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTATCAGCAAAAGTACTGAAAG
* * *
81593518 AAACTCCTA-AGTGGAAGCTCTTTTGTTACAGTAGTTCCTA
1 AAGCTCCCACA-TGGAAGCTCTTTTGCTACAGTAGTTCCTA
81593558 TTTGGCCTGA
Statistics
Matches: 145, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
125 1 0.01
126 144 0.99
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.29
Consensus pattern (126 bp):
AAGCTCCCACATGGAAGCTCTTTTGCTACAGTAGTTCCTAAAAAAATAATTTGGAGAAGACGTTC
CTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTATCAGCAAAAGTACTGAAAG
Found at i:81594727 original size:18 final size:18
Alignment explanation
Indices: 81594701--81594743 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
81594691 GACTAGAAAA
* * *
81594701 AGGAAACATATAAGGGTT
1 AGGATACATAAAAGGGCT
81594719 AGGATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
81594737 AGGATAC
1 AGGATAC
81594744 GCACCTGGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.44, C:0.09, G:0.28, T:0.19
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:81595359 original size:7 final size:7
Alignment explanation
Indices: 81595349--81595373 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
81595339 TTATATACAT
81595349 AATACTA
1 AATACTA
81595356 AATACTA
1 AATACTA
81595363 AATACTA
1 AATACTA
81595370 AATA
1 AATA
81595374 TGTAATGACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:81596181 original size:21 final size:20
Alignment explanation
Indices: 81596155--81596215 Score: 77
Period size: 21 Copynumber: 3.0 Consensus size: 20
81596145 GCTTTGCCGA
81596155 TCAGGCACTTTATGTGTCGTT
1 TCAGGCAC-TTATGTGTCGTT
**
81596176 TCAGGCACCTCGTGTGTCGTT
1 TCAGGCA-CTTATGTGTCGTT
*
81596197 ACAGGCACTTATGTGTCGT
1 TCAGGCACTTATGTGTCGT
81596216 ATACTGATCA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
20 10 0.29
21 23 0.68
22 1 0.03
ACGTcount: A:0.15, C:0.23, G:0.26, T:0.36
Consensus pattern (20 bp):
TCAGGCACTTATGTGTCGTT
Found at i:81596514 original size:25 final size:25
Alignment explanation
Indices: 81596486--81596560 Score: 63
Period size: 27 Copynumber: 3.2 Consensus size: 25
81596476 AATTGGAGAG
81596486 TTATATGCTTGGTAATTATAATTC-
1 TTATATGCTTGGTAATTATAATTCT
* *
81596510 TT-TAT--TT-CT-ATTATAATTTT
1 TTATATGCTTGGTAATTATAATTCT
*
81596530 AGTTACATGCTTGGTAATTATAATTCT
1 --TTATATGCTTGGTAATTATAATTCT
81596557 TTAT
1 TTAT
81596561 TTCTATTATA
Statistics
Matches: 37, Mismatches: 6, Indels: 15
0.64 0.10 0.26
Matches are distributed among these distances:
19 9 0.24
20 1 0.03
21 2 0.05
22 2 0.05
23 5 0.14
24 2 0.05
25 5 0.14
26 1 0.03
27 10 0.27
ACGTcount: A:0.28, C:0.08, G:0.09, T:0.55
Consensus pattern (25 bp):
TTATATGCTTGGTAATTATAATTCT
Found at i:81596524 original size:19 final size:19
Alignment explanation
Indices: 81596500--81596573 Score: 58
Period size: 19 Copynumber: 3.5 Consensus size: 19
81596490 ATGCTTGGTA
81596500 ATTATAATTCTTTATTTCT
1 ATTATAATTCTTTATTTCT
* *
81596519 ATTATAATTTTAGTTACATGCTTGGT
1 ATTATAATTCT--TT--AT--TT-CT
81596545 AATTATAATTCTTTATTTCT
1 -ATTATAATTCTTTATTTCT
81596565 ATTATAATT
1 ATTATAATT
81596574 TGAATTATGG
Statistics
Matches: 43, Mismatches: 4, Indels: 16
0.68 0.06 0.25
Matches are distributed among these distances:
19 19 0.44
20 1 0.02
21 4 0.09
23 4 0.09
25 4 0.09
26 1 0.02
27 10 0.23
ACGTcount: A:0.30, C:0.08, G:0.05, T:0.57
Consensus pattern (19 bp):
ATTATAATTCTTTATTTCT
Found at i:81596540 original size:46 final size:46
Alignment explanation
Indices: 81596484--81596574 Score: 173
Period size: 46 Copynumber: 2.0 Consensus size: 46
81596474 TAAATTGGAG
*
81596484 AGTTATATGCTTGGTAATTATAATTCTTTATTTCTATTATAATTTT
1 AGTTACATGCTTGGTAATTATAATTCTTTATTTCTATTATAATTTT
81596530 AGTTACATGCTTGGTAATTATAATTCTTTATTTCTATTATAATTT
1 AGTTACATGCTTGGTAATTATAATTCTTTATTTCTATTATAATTT
81596575 GAATTATGGT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.29, C:0.08, G:0.09, T:0.55
Consensus pattern (46 bp):
AGTTACATGCTTGGTAATTATAATTCTTTATTTCTATTATAATTTT
Found at i:81598345 original size:14 final size:13
Alignment explanation
Indices: 81598312--81598342 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
81598302 TGAAATTTTT
*
81598312 ATAATTTTAAAAA
1 ATAAATTTAAAAA
81598325 ATAAATTTAAAAA
1 ATAAATTTAAAAA
81598338 ATAAA
1 ATAAA
81598343 ATTAGAGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
ATAAATTTAAAAA
Found at i:81598394 original size:11 final size:11
Alignment explanation
Indices: 81598380--81598409 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
81598370 GAGAGCTTTG
81598380 AGAGAAATTTT
1 AGAGAAATTTT
81598391 AGAGAAATTTT
1 AGAGAAATTTT
81598402 AGAGAAAT
1 AGAGAAAT
81598410 ATGAGAGAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.50, C:0.00, G:0.20, T:0.30
Consensus pattern (11 bp):
AGAGAAATTTT
Found at i:81598416 original size:11 final size:11
Alignment explanation
Indices: 81598376--81598418 Score: 59
Period size: 11 Copynumber: 3.9 Consensus size: 11
81598366 TAAAGAGAGC
81598376 TTTGAGAGAAA
1 TTTGAGAGAAA
*
81598387 TTTTAGAGAAA
1 TTTGAGAGAAA
*
81598398 TTTTAGAGAAA
1 TTTGAGAGAAA
*
81598409 TATGAGAGAA
1 TTTGAGAGAA
81598419 TATTGAAAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.47, C:0.00, G:0.23, T:0.30
Consensus pattern (11 bp):
TTTGAGAGAAA
Found at i:81599468 original size:5 final size:5
Alignment explanation
Indices: 81599448--81599495 Score: 55
Period size: 5 Copynumber: 9.8 Consensus size: 5
81599438 CGAAATAATT
* *
81599448 ATATA ATGAAA ATATA ATATA ATATA ATAAA ATATA A-A-A ATATA ATAT
1 ATATA AT-ATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATAT
81599496 CAACATAATG
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
3 2 0.06
4 2 0.06
5 28 0.78
6 4 0.11
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (5 bp):
ATATA
Found at i:81599473 original size:10 final size:10
Alignment explanation
Indices: 81599448--81599494 Score: 62
Period size: 10 Copynumber: 4.8 Consensus size: 10
81599438 CGAAATAATT
81599448 ATATAATGAAA
1 ATATAAT-AAA
*
81599459 ATATAATATA
1 ATATAATAAA
81599469 ATATAATAAA
1 ATATAATAAA
81599479 ATAT-A-AAA
1 ATATAATAAA
81599487 ATATAATA
1 ATATAATA
81599495 TCAACATAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
8 7 0.22
9 2 0.06
10 16 0.50
11 7 0.22
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (10 bp):
ATATAATAAA
Found at i:81599491 original size:18 final size:20
Alignment explanation
Indices: 81599448--81599494 Score: 71
Period size: 18 Copynumber: 2.4 Consensus size: 20
81599438 CGAAATAATT
81599448 ATATAATGAAAATATAATATA
1 ATATAAT-AAAATATAATATA
81599469 ATATAATAAAATATAA-A-A
1 ATATAATAAAATATAATATA
81599487 ATATAATA
1 ATATAATA
81599495 TCAACATAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
18 9 0.35
19 1 0.04
20 9 0.35
21 7 0.27
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (20 bp):
ATATAATAAAATATAATATA
Found at i:81600025 original size:24 final size:24
Alignment explanation
Indices: 81599997--81600048 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
81599987 TTTCTAGAAC
*
81599997 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGTATTTATTAGCATAATAT
*
81600021 ATTTAGTATTTATTAGCATAATTT
1 ATTTAGTATTTATTAGCATAATAT
81600045 ATTT
1 ATTT
81600049 GACCTATGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.35, C:0.02, G:0.08, T:0.56
Consensus pattern (24 bp):
ATTTAGTATTTATTAGCATAATAT
Found at i:81607664 original size:14 final size:14
Alignment explanation
Indices: 81607645--81607674 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
81607635 TATCAAAGGC
*
81607645 AAAAAAGAGAAAAA
1 AAAAAAAAGAAAAA
81607659 AAAAAAAAGAAAAA
1 AAAAAAAAGAAAAA
81607673 AA
1 AA
81607675 GAGCTAGCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (14 bp):
AAAAAAAAGAAAAA
Found at i:81607666 original size:16 final size:15
Alignment explanation
Indices: 81607645--81607674 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
81607635 TATCAAAGGC
81607645 AAAAAAGAGAAAAAAA
1 AAAAAAGA-AAAAAAA
81607661 AAAAAAGAAAAAAA
1 AAAAAAGAAAAAAA
81607675 GAGCTAGCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (15 bp):
AAAAAAGAAAAAAAA
Found at i:81609657 original size:9 final size:10
Alignment explanation
Indices: 81609633--81609682 Score: 57
Period size: 10 Copynumber: 4.8 Consensus size: 10
81609623 GTATTTTACT
*
81609633 AAAATAATAC
1 AAAAAAATAC
81609643 AAAAAAATA-
1 AAAAAAATAC
81609652 AAAAAAATACC
1 AAAAAAATA-C
81609663 AAAATAATATAC
1 AAAA-AA-ATAC
81609675 AAAAAAAT
1 AAAAAAAT
81609683 TTATTTACCA
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
9 9 0.26
10 10 0.29
11 6 0.17
12 7 0.20
13 3 0.09
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (10 bp):
AAAAAAATAC
Found at i:81609678 original size:22 final size:19
Alignment explanation
Indices: 81609633--81609682 Score: 55
Period size: 19 Copynumber: 2.4 Consensus size: 19
81609623 GTATTTTACT
*
81609633 AAAATAATACAAAAAAATA
1 AAAAAAATACAAAAAAATA
81609652 AAAAAAATACCAAAATAATATA
1 AAAAAAATA-CAAAA-AA-ATA
81609674 CAAAAAAAT
1 -AAAAAAAT
81609683 TTATTTACCA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
19 8 0.31
20 5 0.19
21 2 0.08
22 3 0.12
23 8 0.31
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (19 bp):
AAAAAAATACAAAAAAATA
Found at i:81609961 original size:151 final size:151
Alignment explanation
Indices: 81609782--81610589 Score: 1056
Period size: 151 Copynumber: 5.3 Consensus size: 151
81609772 AACATGTTCG
* * * *
81609782 TATTTCAGCCATTTATTCGTATTTTTTTCTTGAATTTTATTACTTTAAAAAATATATTATTTTCT
1 TATTTCGGCCCTTTGTTCGTATTTTTTTC-CGAATTTTATTACTTTAAAAAATATATTATTTTCT
* *
81609847 AATATATTATTTTATATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTTTA
65 AATTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTTTA
** *
81609912 TTTAAA-TTAAAAAAAAACCTT
130 AATAAATTTAAAAAAAAACCCT
* *
81609933 TATTTTGGCCCTTTGTTCGTATTTTTTTCAG-ATTTTATTACTTTCAATAAAAATATATTATTTT
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCGAATTTTATTACTTT--A-AAAAATATATTATTTT
* * * * *
81609997 CGTATTTTATTATTTTACAGTATTTTAGCACATTATGTTTGAAATGTATTAATTTACTGTGTTTT
63 C-TAATTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTT
* *
81610062 TTAAATAAATTTTAAAAAAAACTCT
127 TTAAATAAATTTAAAAAAAAACCCT
* * * * *
81610087 TATTTTGGCGCTTTGTTCGTATTTTTTCCCCGAATTTTATTACTTT-AAAAA-ACACTATTTTCT
1 TATTTCGGCCCTTTGTTCGTATTTTTT-TCCGAATTTTATTACTTTAAAAAATATATTATTTTCT
81610150 AATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTG-TTTTT
65 AA-TTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTTT
* * *
81610214 ATATAAAATTAAAAAAAAATCCT
129 AAATAAATTTAAAAAAAAACCCT
* *
81610237 TATTTCGGTCCTTTGTTCGTATTTTTTTTCCCAAATTTTATTACTTTCAATAAAAATATATTATT
1 TATTTCGGCCCTTTGTTCGTA-TTTTTTT-CCGAATTTTATTACTTT--A-AAAAATATATTATT
* * * * *
81610302 TGTGTATTTTATTATTTTACATTATTTTATTACATTATGTTTGAAATGTATTAATTTACTGTGTT
61 T-TCTAATTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTT
**
81610367 TTTTAAATAAATTTAGTAAAAAACCCT
125 TTTTAAATAAATTTAAAAAAAAACCCT
* * * *
81610394 TATTTCGGCCCTCTGTTCGTATTTTTTT-CGGATTTTATTA-TTTTAAAAA-ATACTATTTTCTA
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCGAATTTTATTACTTTAAAAAATATATTATTTTCTA
81610456 ATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTTTA
66 A-TTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTTTA
81610521 AATAAATTTAGAAAAAAAACCCT
130 AATAAATTTA-AAAAAAAACCCT
*
81610544 TATTTCGGCCCTTTGTTCGTATTTTTTTACCGGATTTTATTACTTT
1 TATTTCGGCCCTTTGTTCGTATTTTTTT-CCGAATTTTATTACTTT
81610590 CAATAAAAAA
Statistics
Matches: 572, Mismatches: 63, Indels: 42
0.84 0.09 0.06
Matches are distributed among these distances:
148 3 0.01
149 91 0.16
150 86 0.15
151 109 0.19
152 34 0.06
153 69 0.12
154 48 0.08
155 7 0.01
156 80 0.14
157 45 0.08
ACGTcount: A:0.30, C:0.10, G:0.08, T:0.52
Consensus pattern (151 bp):
TATTTCGGCCCTTTGTTCGTATTTTTTTCCGAATTTTATTACTTTAAAAAATATATTATTTTCTA
ATTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTTTAA
ATAAATTTAAAAAAAAACCCT
Found at i:81610009 original size:16 final size:18
Alignment explanation
Indices: 81609988--81610023 Score: 58
Period size: 16 Copynumber: 2.1 Consensus size: 18
81609978 AATAAAAATA
81609988 TATTATTTT-C-GTATTT
1 TATTATTTTACAGTATTT
81610004 TATTATTTTACAGTATTT
1 TATTATTTTACAGTATTT
81610022 TA
1 TA
81610024 GCACATTATG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 9 0.50
17 1 0.06
18 8 0.44
ACGTcount: A:0.25, C:0.06, G:0.06, T:0.64
Consensus pattern (18 bp):
TATTATTTTACAGTATTT
Found at i:81610373 original size:307 final size:303
Alignment explanation
Indices: 81609797--81610598 Score: 1220
Period size: 307 Copynumber: 2.6 Consensus size: 303
81609787 CAGCCATTTA
* * *
81609797 TTCGTATTTTTTTCTTGAATTTTATTACTTTAAAAAATATATTATTTTCTAA-TATATTATTTTA
1 TTCGTA-TTTTTTCTCGAATTTTATTACTTT-AAAAA-ATACTATTTTCTAATTTTATTATTTTA
* *
81609861 TATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTT-TATTTAAATTAAAAA
63 CATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTTATA-TAAAATTAAAAA
*
81609925 AAAACCTTTATTTTGGCCCTTTGTTCGTATTTTTTT-CAGATTTTATTACTTTCAATAAAAATAT
127 AAAACC-TTATTTCGGCCCTTTGTTCGTATTTTTTTCCAGATTTTATTACTTTCAATAAAAATAT
81609989 ATTATTTTCGTATTTTATTATTTTACAGTATTTTAGCACATTATGTTTGAAATGTATTAATTTAC
191 ATTATTTTCGTATTTTATTATTTTACAGTATTTTAGCACATTATGTTTGAAATGTATTAATTTAC
* * * *
81610054 TGTGTTTTTTAAATAAATTTTA-AAAAAAACTCTTATTTTGGCGCTTTG
256 TGTGTTTTTTAAATAAA-TTTAGAAAAAAACCCTTATTTCGGCCCTCTG
* *
81610102 TTCGTATTTTTTCCCCGAATTTTATTACTTTAAAAAACACTATTTTCTAATTTTATTATTTTACA
1 TTCGTATTTTTT-CTCGAATTTTATTACTTTAAAAAATACTATTTTCTAATTTTATTATTTTACA
81610167 TTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTTATATAAAATTAAAAAAAA
65 TTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTTATATAAAATTAAAAAAAA
* *
81610232 ATCCTTATTTCGGTCCTTTGTTCGTATTTTTTTTCCCAAATTTTATTACTTTCAATAAAAATATA
130 A-CCTTATTTCGGCCCTTTGTTCGTA-TTTTTTT-CCAGATTTTATTACTTTCAATAAAAATATA
* **
81610297 TTATTTGT-GTATTTTATTATTTTACATTATTTTATTACATTATGTTTGAAATGTATTAATTTAC
192 TTATTT-TCGTATTTTATTATTTTACAGTATTTTAGCACATTATGTTTGAAATGTATTAATTTAC
*
81610361 TGTGTTTTTTAAATAAATTTAGTAAAAAACCCTTATTTCGGCCCTCTG
256 TGTGTTTTTTAAATAAATTTAGAAAAAAACCCTTATTTCGGCCCTCTG
* *
81610409 TTCGTATTTTTT-TCGGATTTTATTATTTTAAAAAATACTATTTTCTAATTTTATTATTTTACAT
1 TTCGTATTTTTTCTCGAATTTTATTACTTTAAAAAATACTATTTTCTAATTTTATTATTTTACAT
* *
81610473 TATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTTTAAATAAATTTAGAAAAAA
66 TATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTG-TTTTTATATAAAATTA-AAAAAA
*
81610538 AACCCTTATTTCGGCCCTTTGTTCGTATTTTTTTACCGGATTTTATTACTTTCAATAAAAA
129 AA-CCTTATTTCGGCCCTTTGTTCGTATTTTTTT-CCAGATTTTATTACTTTCAATAAAAA
81610599 ACACACTAAA
Statistics
Matches: 457, Mismatches: 29, Indels: 21
0.90 0.06 0.04
Matches are distributed among these distances:
303 12 0.03
304 105 0.23
305 122 0.27
306 49 0.11
307 168 0.37
308 1 0.00
ACGTcount: A:0.30, C:0.10, G:0.08, T:0.52
Consensus pattern (303 bp):
TTCGTATTTTTTCTCGAATTTTATTACTTTAAAAAATACTATTTTCTAATTTTATTATTTTACAT
TATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTTATATAAAATTAAAAAAAAA
CCTTATTTCGGCCCTTTGTTCGTATTTTTTTCCAGATTTTATTACTTTCAATAAAAATATATTAT
TTTCGTATTTTATTATTTTACAGTATTTTAGCACATTATGTTTGAAATGTATTAATTTACTGTGT
TTTTTAAATAAATTTAGAAAAAAACCCTTATTTCGGCCCTCTG
Found at i:81610858 original size:19 final size:19
Alignment explanation
Indices: 81610836--81610875 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
81610826 AATAAACTTT
81610836 TTTTTATATTATTTTGGTA
1 TTTTTATATTATTTTGGTA
* * *
81610855 TTTTTTTATTTTTTTTGTA
1 TTTTTATATTATTTTGGTA
81610874 TT
1 TT
81610876 ACTTTAGTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.15, C:0.00, G:0.07, T:0.78
Consensus pattern (19 bp):
TTTTTATATTATTTTGGTA
Found at i:81616660 original size:74 final size:74
Alignment explanation
Indices: 81616539--81616681 Score: 286
Period size: 74 Copynumber: 1.9 Consensus size: 74
81616529 ACGCCGAAAG
81616539 GTTGGTATCCGAGACATGGAAGCTACTATTCCCTGCAATCTGTCATAAAATGAAAATTGCGTGAT
1 GTTGGTATCCGAGACATGGAAGCTACTATTCCCTGCAATCTGTCATAAAATGAAAATTGCGTGAT
81616604 GATTTTAAT
66 GATTTTAAT
81616613 GTTGGTATCCGAGACATGGAAGCTACTATTCCCTGCAATCTGTCATAAAATGAAAATTGCGTGAT
1 GTTGGTATCCGAGACATGGAAGCTACTATTCCCTGCAATCTGTCATAAAATGAAAATTGCGTGAT
81616678 GATT
66 GATT
81616682 CCTAACGCAC
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 69 1.00
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (74 bp):
GTTGGTATCCGAGACATGGAAGCTACTATTCCCTGCAATCTGTCATAAAATGAAAATTGCGTGAT
GATTTTAAT
Found at i:81622617 original size:40 final size:39
Alignment explanation
Indices: 81622559--81622703 Score: 141
Period size: 40 Copynumber: 3.6 Consensus size: 39
81622549 GCGGTATTTT
81622559 TAGCGGCG-TTTGATAAAAAACACCGCTATAGATCGAGCA-
1 TAGCGGCGCTTT--TAAAAAACACCGCTATAGATCGAGCAC
** * *
81622598 TAGCGGCGCTTATTAAAAAAGGCCGCTATAGATCAAGCAT
1 TAGCGGCGCTT-TTAAAAAACACCGCTATAGATCGAGCAC
* * * * * *
81622638 TAGCGGCGCTTTTCCAGAAACGCCGCTATAGGTTGACCAC
1 TAGCGGCGCTTTT-AAAAAACACCGCTATAGATCGAGCAC
81622678 TAGCGGCGCCTTTTAAAAAACACCGC
1 TAGCGGCG-CTTTTAAAAAACACCGC
81622704 AAAAAGATTA
Statistics
Matches: 87, Mismatches: 14, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
39 33 0.38
40 48 0.55
41 6 0.07
ACGTcount: A:0.31, C:0.25, G:0.23, T:0.21
Consensus pattern (39 bp):
TAGCGGCGCTTTTAAAAAACACCGCTATAGATCGAGCAC
Found at i:81622786 original size:40 final size:40
Alignment explanation
Indices: 81622731--81622812 Score: 137
Period size: 40 Copynumber: 2.0 Consensus size: 40
81622721 CGCTTTAGTG
81622731 GCATTAGCGGCGCTTTTTAAAAAACGCCACTATAGATCGA
1 GCATTAGCGGCGCTTTTTAAAAAACGCCACTATAGATCGA
* * *
81622771 GCATTAGCGGTGCTTTTTGAAAAACGCCGCTATAGATCGA
1 GCATTAGCGGCGCTTTTTAAAAAACGCCACTATAGATCGA
81622811 GC
1 GC
81622813 TTTATGGTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (40 bp):
GCATTAGCGGCGCTTTTTAAAAAACGCCACTATAGATCGA
Found at i:81622882 original size:21 final size:21
Alignment explanation
Indices: 81622835--81622879 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
81622825 GGTTTTAGGG
* *
81622835 TTTATGATTTAAGGGTTGAGA
1 TTTAAGATTTAAGGGTTAAGA
*
81622856 TTTAAGATTTAGGGGTTAAAGA
1 TTTAAGATTTAAGGGTT-AAGA
81622878 TT
1 TT
81622880 AAGGGTTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.31, C:0.00, G:0.27, T:0.42
Consensus pattern (21 bp):
TTTAAGATTTAAGGGTTAAGA
Found at i:81622925 original size:7 final size:7
Alignment explanation
Indices: 81622915--81622941 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
81622905 ATTTAGGGTT
81622915 TAAGGGA
1 TAAGGGA
81622922 TAAGGGA
1 TAAGGGA
81622929 TAAGGGA
1 TAAGGGA
81622936 TAAGGG
1 TAAGGG
81622942 TTTAGATTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.44, T:0.15
Consensus pattern (7 bp):
TAAGGGA
Found at i:81623079 original size:14 final size:14
Alignment explanation
Indices: 81623041--81623067 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
81623031 TAATTATCAT
81623041 TATAGTTTAGGGTA
1 TATAGTTTAGGGTA
81623055 TATAGTTTAGGGT
1 TATAGTTTAGGGT
81623068 TTAAGATTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.00, G:0.30, T:0.44
Consensus pattern (14 bp):
TATAGTTTAGGGTA
Found at i:81623114 original size:15 final size:14
Alignment explanation
Indices: 81623094--81623142 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
81623084 ACTATTTTAA
81623094 GGTTTATGGATTAT
1 GGTTTATGGATTAT
*
81623108 GGGTTTAGGGATTAT
1 -GGTTTATGGATTAT
* *
81623123 GATTTATGGTTTAT
1 GGTTTATGGATTAT
81623137 GGTTTA
1 GGTTTA
81623143 AGGGTTGGGG
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
14 16 0.55
15 13 0.45
ACGTcount: A:0.20, C:0.00, G:0.31, T:0.49
Consensus pattern (14 bp):
GGTTTATGGATTAT
Found at i:81623139 original size:7 final size:7
Alignment explanation
Indices: 81623089--81623142 Score: 54
Period size: 7 Copynumber: 7.6 Consensus size: 7
81623079 GAGTTACTAT
*
81623089 TTTAAGG
1 TTTATGG
81623096 TTTATGG
1 TTTATGG
*
81623103 ATTATGGG
1 TTTAT-GG
*
81623111 TTTAGGG
1 TTTATGG
* *
81623118 ATTATGA
1 TTTATGG
81623125 TTTATGG
1 TTTATGG
81623132 TTTATGG
1 TTTATGG
81623139 TTTA
1 TTTA
81623143 AGGGTTGGGG
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
7 32 0.86
8 5 0.14
ACGTcount: A:0.22, C:0.00, G:0.28, T:0.50
Consensus pattern (7 bp):
TTTATGG
Found at i:81623154 original size:14 final size:15
Alignment explanation
Indices: 81623137--81623172 Score: 65
Period size: 14 Copynumber: 2.5 Consensus size: 15
81623127 TATGGTTTAT
81623137 GGTTTAAGGGTT-GG
1 GGTTTAAGGGTTAGG
81623151 GGTTTAAGGGTTAGG
1 GGTTTAAGGGTTAGG
81623166 GGTTTAA
1 GGTTTAA
81623173 AATTTATGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.44, T:0.36
Consensus pattern (15 bp):
GGTTTAAGGGTTAGG
Found at i:81623168 original size:21 final size:21
Alignment explanation
Indices: 81623130--81623169 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
81623120 TATGATTTAT
* *
81623130 GGTTTATGGTTTAAGGGTTGG
1 GGTTTAAGGGTTAAGGGTTGG
*
81623151 GGTTTAAGGGTTAGGGGTT
1 GGTTTAAGGGTTAAGGGTT
81623170 TAAAATTTAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.15, C:0.00, G:0.45, T:0.40
Consensus pattern (21 bp):
GGTTTAAGGGTTAAGGGTTGG
Found at i:81623793 original size:40 final size:40
Alignment explanation
Indices: 81623736--81623858 Score: 133
Period size: 40 Copynumber: 3.1 Consensus size: 40
81623726 TGAAAAAAAG
* * * *
81623736 GCCGCAAAAGGTA-AGCAATAGCGGTGTTTTT-CGCAAAC
1 GCCGCAAAAAGTAGAGCAATAGTGATGTTTTTGCCCAAAC
* *
81623774 GCCGCAAAAAAGTTGAGCAATAGTGACGTTTTTGGCCCAAAC
1 GCCGC-AAAAAGTAGAGCAATAGTGATGTTTTT-GCCCAAAC
* **
81623816 GCCGCTAAAAGTAGAGCAATAGTGATGTTTTTTTCCAAAC
1 GCCGCAAAAAGTAGAGCAATAGTGATGTTTTTGCCCAAAC
81623856 GCC
1 GCC
81623859 ACGAATATAT
Statistics
Matches: 70, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
38 5 0.07
39 6 0.09
40 24 0.34
41 24 0.34
42 11 0.16
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.24
Consensus pattern (40 bp):
GCCGCAAAAAGTAGAGCAATAGTGATGTTTTTGCCCAAAC
Found at i:81623848 original size:42 final size:42
Alignment explanation
Indices: 81623769--81623847 Score: 124
Period size: 41 Copynumber: 1.9 Consensus size: 42
81623759 GTGTTTTTCG
*
81623769 CAAACGCCGCAAAAAAGTTGAGCAATAGTGACGTTTTTGGCC
1 CAAACGCCGCAAAAAAGTAGAGCAATAGTGACGTTTTTGGCC
* *
81623811 CAAACGCCGC-TAAAAGTAGAGCAATAGTGATGTTTTT
1 CAAACGCCGCAAAAAAGTAGAGCAATAGTGACGTTTTT
81623848 TTCCAAACGC
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
41 24 0.71
42 10 0.29
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (42 bp):
CAAACGCCGCAAAAAAGTAGAGCAATAGTGACGTTTTTGGCC
Found at i:81625247 original size:18 final size:18
Alignment explanation
Indices: 81625224--81625266 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
81625214 TACCAGGTGC
*
81625224 GTATCCTAGCCCTTATAT
1 GTATCCTAACCCTTATAT
*
81625242 GTATCCTAACCCTTTTAT
1 GTATCCTAACCCTTATAT
*
81625260 GTTTCCT
1 GTATCCT
81625267 TTTCCCAGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.19, C:0.28, G:0.09, T:0.44
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:81628956 original size:40 final size:39
Alignment explanation
Indices: 81628898--81629042 Score: 141
Period size: 40 Copynumber: 3.6 Consensus size: 39
81628888 GCGGTATTTT
81628898 TAGCGGCG-TTTGATAAAAAACACCGCTATAGATCGAGCA-
1 TAGCGGCGCTTT--TAAAAAACACCGCTATAGATCGAGCAC
** * *
81628937 TAGCGGCGCTTATTAAAAAAGGCCGCTATAGATCAAGCAT
1 TAGCGGCGCTT-TTAAAAAACACCGCTATAGATCGAGCAC
* * * * * *
81628977 TAGCGGCGCTTTTCCAGAAACGCCGCTATAGGTTGACCAC
1 TAGCGGCGCTTTT-AAAAAACACCGCTATAGATCGAGCAC
81629017 TAGCGGCGCCTTTTAAAAAACACCGC
1 TAGCGGCG-CTTTTAAAAAACACCGC
81629043 AAAAAGATTA
Statistics
Matches: 87, Mismatches: 14, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
39 33 0.38
40 48 0.55
41 6 0.07
ACGTcount: A:0.31, C:0.25, G:0.23, T:0.21
Consensus pattern (39 bp):
TAGCGGCGCTTTTAAAAAACACCGCTATAGATCGAGCAC
Found at i:81629125 original size:40 final size:40
Alignment explanation
Indices: 81629070--81629151 Score: 137
Period size: 40 Copynumber: 2.0 Consensus size: 40
81629060 CGCTTTAGTG
81629070 GCATTAGCGGCGCTTTTTAAAAAACGCCACTATAGATCGA
1 GCATTAGCGGCGCTTTTTAAAAAACGCCACTATAGATCGA
* * *
81629110 GCATTAGCGGTGCTTTTTGAAAAACGCCGCTATAGATCGA
1 GCATTAGCGGCGCTTTTTAAAAAACGCCACTATAGATCGA
81629150 GC
1 GC
81629152 TTTATGGTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (40 bp):
GCATTAGCGGCGCTTTTTAAAAAACGCCACTATAGATCGA
Found at i:81629221 original size:21 final size:21
Alignment explanation
Indices: 81629174--81629218 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
81629164 GGTTTTAGGG
* *
81629174 TTTATGATTTAAGGGTTGAGA
1 TTTAAGATTTAAGGGTTAAGA
*
81629195 TTTAAGATTTAGGGGTTAAAGA
1 TTTAAGATTTAAGGGTT-AAGA
81629217 TT
1 TT
81629219 AAGGGTTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.31, C:0.00, G:0.27, T:0.42
Consensus pattern (21 bp):
TTTAAGATTTAAGGGTTAAGA
Found at i:81629264 original size:7 final size:7
Alignment explanation
Indices: 81629254--81629280 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
81629244 ATTTAGGGTT
81629254 TAAGGGA
1 TAAGGGA
81629261 TAAGGGA
1 TAAGGGA
81629268 TAAGGGA
1 TAAGGGA
81629275 TAAGGG
1 TAAGGG
81629281 TTTAGATTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.44, T:0.15
Consensus pattern (7 bp):
TAAGGGA
Found at i:81629418 original size:14 final size:14
Alignment explanation
Indices: 81629380--81629406 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
81629370 TAATTATCAT
81629380 TATAGTTTAGGGTA
1 TATAGTTTAGGGTA
81629394 TATAGTTTAGGGT
1 TATAGTTTAGGGT
81629407 TTAAGATTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.00, G:0.30, T:0.44
Consensus pattern (14 bp):
TATAGTTTAGGGTA
Found at i:81629453 original size:15 final size:14
Alignment explanation
Indices: 81629433--81629481 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
81629423 ACTATTTTAA
81629433 GGTTTATGGATTAT
1 GGTTTATGGATTAT
*
81629447 GGGTTTAGGGATTAT
1 -GGTTTATGGATTAT
* *
81629462 GATTTATGGTTTAT
1 GGTTTATGGATTAT
81629476 GGTTTA
1 GGTTTA
81629482 AGGGTTGGGG
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
14 16 0.55
15 13 0.45
ACGTcount: A:0.20, C:0.00, G:0.31, T:0.49
Consensus pattern (14 bp):
GGTTTATGGATTAT
Found at i:81629478 original size:7 final size:7
Alignment explanation
Indices: 81629428--81629481 Score: 54
Period size: 7 Copynumber: 7.6 Consensus size: 7
81629418 GAGTTACTAT
*
81629428 TTTAAGG
1 TTTATGG
81629435 TTTATGG
1 TTTATGG
*
81629442 ATTATGGG
1 TTTAT-GG
*
81629450 TTTAGGG
1 TTTATGG
* *
81629457 ATTATGA
1 TTTATGG
81629464 TTTATGG
1 TTTATGG
81629471 TTTATGG
1 TTTATGG
81629478 TTTA
1 TTTA
81629482 AGGGTTGGGG
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
7 32 0.86
8 5 0.14
ACGTcount: A:0.22, C:0.00, G:0.28, T:0.50
Consensus pattern (7 bp):
TTTATGG
Done.