Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 268 of 313
Found at i:81869106 original size:192 final size:193
Alignment explanation
Indices: 81868895--81869318 Score: 814
Period size: 192 Copynumber: 2.2 Consensus size: 193
81868885 TACTATAAAA
81868895 TATAATTTAAAATAATTATTATTAAATATAATTTAATAAAATTCTTAATAATAAATATTATTATA
1 TATAATTTAAAATAATTATTATTAAATATAATTTAATAAAATTCTTAATAATAAATATTATTATA
81868960 TGAATTTACTAAAATCATAATATGTAATACTATAAAATATAGTTTAATTAGTTTTTATTAAATAT
66 TGAATTTACTAAAATCATAATATGTAATACTATAAAATATAGTTTAATTAGTTTTTATTAAATAT
**
81869025 AATTTAATAAAAATATATAATTTAATAAAATTA-TTAATAATAAATATTCTTATATGAATTTG
131 AATTTAATAAAAATATATAATTTAATAAAAAAATTTAATAATAAATATTCTTATATGAATTTG
81869087 TATAATTTAAAATAATTATTATTAAATATAATTTAATAAAATTCTTAATAATAAATATTATTATA
1 TATAATTTAAAATAATTATTATTAAATATAATTTAATAAAATTCTTAATAATAAATATTATTATA
81869152 TGAATTTACTAAAATCATAATATGTAATACTATAAAATATAGTTTAATTAGTTTTTATTAAATAT
66 TGAATTTACTAAAATCATAATATGTAATACTATAAAATATAGTTTAATTAGTTTTTATTAAATAT
*
81869217 AATTTAATAAAAATATATAATTTAATAAAAAAATTTAGTAATAAATATTCTTATATGAATTTG
131 AATTTAATAAAAATATATAATTTAATAAAAAAATTTAATAATAAATATTCTTATATGAATTTG
81869280 TATAATTTAAAATAATTATTATTAAATATAATTTAATAA
1 TATAATTTAAAATAATTATTATTAAATATAATTTAATAA
81869319 TGATATATAA
Statistics
Matches: 228, Mismatches: 3, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
192 161 0.71
193 67 0.29
ACGTcount: A:0.50, C:0.02, G:0.03, T:0.45
Consensus pattern (193 bp):
TATAATTTAAAATAATTATTATTAAATATAATTTAATAAAATTCTTAATAATAAATATTATTATA
TGAATTTACTAAAATCATAATATGTAATACTATAAAATATAGTTTAATTAGTTTTTATTAAATAT
AATTTAATAAAAATATATAATTTAATAAAAAAATTTAATAATAAATATTCTTATATGAATTTG
Found at i:81869236 original size:18 final size:18
Alignment explanation
Indices: 81869213--81869247 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
81869203 TTTTTATTAA
81869213 ATATAATTTAATAAAAAT
1 ATATAATTTAATAAAAAT
81869231 ATATAATTTAATAAAAA
1 ATATAATTTAATAAAAA
81869248 AATTTAGTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
ATATAATTTAATAAAAAT
Found at i:81869398 original size:294 final size:291
Alignment explanation
Indices: 81868798--81869377 Score: 777
Period size: 294 Copynumber: 2.0 Consensus size: 291
81868788 TTAATCATAT
*
81868798 TTTAACATAATTATTATTAAATATAATTTAATAAAATTCTTAATAATAAATATTATTATATGAAT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAATTCTTAATAATAAATATTATTATATGAAT
81868863 TTACTAAAATCATAATATGTAATACTATAAAATATAATTTAAAATAATTATTATTAAATATAATT
66 TTACTAAAATCATAATATGTAATACTATAAAATATAATTTAAAATAATTATTATTAAATATAATT
* * * **
81868928 TAATAAAATTCTTAATAATAAATATTATTATATGAATTTACTAAAATCATAATATGTAATACTAT
131 TAATAAAA-T-ATAATAATAAATATTAATAAAAAAATTTACT-AAATCATAATATGTAATACTAT
* * * *
81868993 AAAATATAGTTTAATTAGTTTTTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTA
193 AAAATATAATTTAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTA
* *
81869058 TTAATAATAAATATTCTTATATGAATTTGTATAA
258 TTAATAATAAATATTCTTATATGAATTTCTAAAA
81869092 TTTAAAATAATTATTATTAAATATAATTTAATAAAATTCTTAATAATAAATATTATTATATGAAT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAATTCTTAATAATAAATATTATTATATGAAT
* * * *
81869157 TTACTAAAATCATAATATGTAATACTATAAAATATAGTTT-AATTAGTTTTTATTAAATATAATT
66 TTACTAAAATCATAATATGTAATACTATAAAATATAATTTAAAATAATTATTATTAAATATAATT
* **
81869221 TAATAAAA-AT-AT-AT-AAT-TTAATAAAAAAATTTAGT-AAT-A-AATAT-TCTTA-TATGAA
131 TAATAAAATATAATAATAAATATTAATAAAAAAATTTACTAAATCATAATATGTAATACTAT-AA
** ** *
81869276 TTTGTATAATTTAAAATAATTATTATTAAATATAATTTAATAATGATATATAATTTCATAAAATT
195 --AATATAATTT-AAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATT
* *
81869341 CTTACTAATAAATATTCTTATATGAATTTACTAAAA
257 ATTAATAATAAATATTCTTATATGAATTT-CTAAAA
81869377 T
1 T
81869378 CATAATATAA
Statistics
Matches: 255, Mismatches: 26, Indels: 19
0.85 0.09 0.06
Matches are distributed among these distances:
280 3 0.01
281 5 0.02
282 5 0.02
283 8 0.03
284 76 0.30
285 5 0.02
286 13 0.05
287 3 0.01
288 2 0.01
289 2 0.01
290 1 0.00
293 29 0.11
294 103 0.40
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.44
Consensus pattern (291 bp):
TTTAAAATAATTATTATTAAATATAATTTAATAAAATTCTTAATAATAAATATTATTATATGAAT
TTACTAAAATCATAATATGTAATACTATAAAATATAATTTAAAATAATTATTATTAAATATAATT
TAATAAAATATAATAATAAATATTAATAAAAAAATTTACTAAATCATAATATGTAATACTATAAA
ATATAATTTAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTATTA
ATAATAAATATTCTTATATGAATTTCTAAAA
Found at i:81869897 original size:27 final size:25
Alignment explanation
Indices: 81869844--81869934 Score: 103
Period size: 25 Copynumber: 3.6 Consensus size: 25
81869834 TACCATCAAG
* *
81869844 AAACATAAAGAGACATACAA-AATAT
1 AAACATACAGAAACATA-AAGAATAT
* *
81869869 AAACATACAAAAACGTAAATTGAATAT
1 AAACATACAGAAACATAAA--GAATAT
*
81869896 AAACATACAGAAACATACAGAATAT
1 AAACATACAGAAACATAAAGAATAT
81869921 AAACATACAGAAAC
1 AAACATACAGAAAC
81869935 CATTTCCAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
24 2 0.04
25 33 0.59
27 21 0.38
ACGTcount: A:0.62, C:0.14, G:0.08, T:0.16
Consensus pattern (25 bp):
AAACATACAGAAACATAAAGAATAT
Found at i:81885402 original size:6 final size:6
Alignment explanation
Indices: 81885375--81885452 Score: 50
Period size: 6 Copynumber: 12.5 Consensus size: 6
81885365 TGTTTATTTG
* * * * * *
81885375 TTTTCT TTTTAA TTTTAA TTTTATT TTTTAT GTTTAT GTTTAT TTTTCT
1 TTTTAT TTTTAT TTTTAT TTTTA-T TTTTAT TTTTAT TTTTAT TTTTAT
*
81885424 TTTTAAT TGTTT-T GTTTTAG TTTTAT TTT
1 TTTT-AT T-TTTAT -TTTTAT TTTTAT TTT
81885453 CTTGTACTTC
Statistics
Matches: 58, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
6 47 0.81
7 8 0.14
8 3 0.05
ACGTcount: A:0.15, C:0.03, G:0.06, T:0.76
Consensus pattern (6 bp):
TTTTAT
Found at i:81885410 original size:25 final size:25
Alignment explanation
Indices: 81885386--81885452 Score: 64
Period size: 25 Copynumber: 2.6 Consensus size: 25
81885376 TTTCTTTTTA
*
81885386 ATTTTAATTTTATTTTTTA-TGTTT
1 ATTTTAATTTTATTTTTAATTGTTT
* *
81885410 ATGTTTATTTTTCTTTTTAATTGTTTT
1 AT-TTTAATTTTATTTTTAATTG-TTT
* *
81885437 GTTTTAGTTTTATTTT
1 ATTTTAATTTTATTTT
81885453 CTTGTACTTC
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
24 2 0.06
25 14 0.41
26 14 0.41
27 4 0.12
ACGTcount: A:0.16, C:0.01, G:0.07, T:0.75
Consensus pattern (25 bp):
ATTTTAATTTTATTTTTAATTGTTT
Found at i:81887948 original size:13 final size:13
Alignment explanation
Indices: 81887930--81887956 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
81887920 TTAATCAACA
81887930 TAAAGTCAGTTGT
1 TAAAGTCAGTTGT
81887943 TAAAGTCAGTTGT
1 TAAAGTCAGTTGT
81887956 T
1 T
81887957 CTTACTCTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.41
Consensus pattern (13 bp):
TAAAGTCAGTTGT
Found at i:81891853 original size:42 final size:42
Alignment explanation
Indices: 81891807--81891904 Score: 135
Period size: 42 Copynumber: 2.3 Consensus size: 42
81891797 TCTCAGATGT
* *
81891807 GGTCTTACATGTAATCAAATAACGATGCCATTGTCC-AGATAG
1 GGTCTTACATGTAATCAAAT-ACGATGCCAATGTCCTAGACAG
* *
81891849 GGTCTTACATGTAATCATATACGATGCCAATGTCCTAGACAT
1 GGTCTTACATGTAATCAAATACGATGCCAATGTCCTAGACAG
*
81891891 GGTCTTACACGTAA
1 GGTCTTACATGTAA
81891905 ATCTCAAATC
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
41 14 0.28
42 36 0.72
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (42 bp):
GGTCTTACATGTAATCAAATACGATGCCAATGTCCTAGACAG
Found at i:81893729 original size:21 final size:20
Alignment explanation
Indices: 81893679--81893734 Score: 51
Period size: 21 Copynumber: 2.8 Consensus size: 20
81893669 TCTTTGCAAA
*
81893679 ATAAGAGTATCGATAATTATT
1 ATAA-AGTATCGATAATTATG
* * *
81893700 TTAAGGTATCGATACTTTATG
1 ATAAAGTATCGATA-ATTATG
81893721 ATAAAGTAT-GATAA
1 ATAAAGTATCGATAA
81893735 AGTATCAATA
Statistics
Matches: 27, Mismatches: 7, Indels: 4
0.71 0.18 0.11
Matches are distributed among these distances:
20 13 0.48
21 14 0.52
ACGTcount: A:0.41, C:0.05, G:0.16, T:0.38
Consensus pattern (20 bp):
ATAAAGTATCGATAATTATG
Found at i:81909204 original size:35 final size:35
Alignment explanation
Indices: 81909158--81909225 Score: 136
Period size: 35 Copynumber: 1.9 Consensus size: 35
81909148 AAGATAATTC
81909158 AAATTTAAAATAAAGTAGCACTTATCGACATTTTT
1 AAATTTAAAATAAAGTAGCACTTATCGACATTTTT
81909193 AAATTTAAAATAAAGTAGCACTTATCGACATTT
1 AAATTTAAAATAAAGTAGCACTTATCGACATTT
81909226 CCCCAATCAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.44, C:0.12, G:0.09, T:0.35
Consensus pattern (35 bp):
AAATTTAAAATAAAGTAGCACTTATCGACATTTTT
Found at i:81912345 original size:19 final size:19
Alignment explanation
Indices: 81912317--81912353 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
81912307 GACAGATTTC
*
81912317 TTTTGATTTTTTGATTTTA
1 TTTTGATTTTTTCATTTTA
*
81912336 TTTTGTTTTTTTCATTTT
1 TTTTGATTTTTTCATTTT
81912354 CGGCTATAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.11, C:0.03, G:0.08, T:0.78
Consensus pattern (19 bp):
TTTTGATTTTTTCATTTTA
Found at i:81920258 original size:129 final size:129
Alignment explanation
Indices: 81920050--81920607 Score: 1026
Period size: 129 Copynumber: 4.3 Consensus size: 129
81920040 GCTCCCTGAC
* *
81920050 CAGCAGTGGAATAGGTTAGGAAATTACAGATCTTGTCTCCCTGAGCAATAGCGGAGCAGATCAAA
1 CAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCAAA
** * * * *
81920115 GACGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGTCACAAGTCCTATATCCCTGGC
66 GATAGCGAATCTTATCTTCAAGTGTAAGGAAGTAGATTTAAGCCACAAGTCCTATATCCCTGGT
81920179 CAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCAAA
1 CAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCAAA
81920244 GATAGCGAATCTTATCTTCAAGTGTAAGGAAGTAGATTTAAGCCACAAGTCCTATATCCCTGGT
66 GATAGCGAATCTTATCTTCAAGTGTAAGGAAGTAGATTTAAGCCACAAGTCCTATATCCCTGGT
81920308 CAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCAAA
1 CAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCAAA
81920373 GATAGCGAATCTTATCTTCAAGTGTAAGGAAGTAGATTTAAGCCACAAGTCCTATATCCCTGGT
66 GATAGCGAATCTTATCTTCAAGTGTAAGGAAGTAGATTTAAGCCACAAGTCCTATATCCCTGGT
81920437 CAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCAAA
1 CAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCAAA
81920502 GATAGCGAATCTTATCTTCAAGTGTAAGGAAGTAGATTTAAGCCACAAGTCCTATATCCCTGGT
66 GATAGCGAATCTTATCTTCAAGTGTAAGGAAGTAGATTTAAGCCACAAGTCCTATATCCCTGGT
* *
81920566 CAGCAGTGGAATAGGTTGGGAAATTACAGATCCTCTCTCCCT
1 CAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCT
81920608 GAAGTTGTAG
Statistics
Matches: 419, Mismatches: 10, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
129 419 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.25
Consensus pattern (129 bp):
CAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCAAA
GATAGCGAATCTTATCTTCAAGTGTAAGGAAGTAGATTTAAGCCACAAGTCCTATATCCCTGGT
Found at i:81920773 original size:387 final size:383
Alignment explanation
Indices: 81920050--81920776 Score: 885
Period size: 387 Copynumber: 1.9 Consensus size: 383
81920040 GCTCCCTGAC
*
81920050 CAGCAGTGGAATAGGTTAGGAAATTACAGATCTTGTCTCCCTGAGCAATAGCGGAGCAGATCAAA
1 CAGCAGTGGAATAGGTTAGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCAAA
* * *
81920115 GACGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGTCACAAGTCCTATATCCCTGGCC
66 GACAGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGCC
* *
81920180 AGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCAAAG
131 AGCAGTGGAATAGGTTGGGAAATTACAGATCCTCTCTCCCTAAGCAATAGCGGAGCAGATCAAAG
* * *
81920245 ATAGCGAATCTTATCTTCAAGTGTAAGGAAGTAGATTTAAGCCACAAGTCCTATATCCCTGGTCA
196 ATA-CGAATCTTATCTTCAAGTGT-A-GAAGTAGAGTGAACCCACAAGTCCTATATCCCTGGTCA
* ** * * * * *
81920310 GCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCAAAGA
258 GCAGTGGAACAGACTGAGAAA-TACAGATCTTATCCCCCTAAGCAACAGCGGAGCAGACCAAAGA
*
81920375 TAGCGAATCTTATCTTCAAGTGTAAGGAAGTAGATTTAAGCCACAAGTCCTATATCCCTGGT
322 TAGCAAATCTTATCTTCAAGTGTAAGGAAGTAGATTTAAGCCACAAGTCCTATATCCCTGGT
*
81920437 CAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCAAA
1 CAGCAGTGGAATAGGTTAGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCAAA
* * *
81920502 GATAGCGAATCTTATCTTCAAGTGTAAGGAAGTAGATTTAAGCCACAAGTCCTATATCCCTGGTC
66 GACAGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGCC
*** * * *
81920567 AGCAGTGGAATAGGTTGGGAAATTACAGATCCTCTCTCCCTGAAGTTGTAGTGGAGCAGGTTAAA
131 AGCAGTGGAATAGGTTGGGAAATTACAGATCCTCTCTCCCT-AAGCAATAGCGGAGCAGATCAAA
* * * * *
81920632 GTAATA-G-ATCTTATCTCTCTGAAGT-T-GCAGTAGAGTGGACCGCATCAAGTCTTATCTCCGT
195 G--ATACGAATCTTATCT-TC--AAGTGTAGAAGTAGAGTGAACC-CA-CAAGTCCTATATCCCT
* * ** * * *
81920693 GAGGT-TGCAGTGGAGCAGACTGAGAAA-ACA-AGTCTTATCCCCCTGAAGTTACAGTGGGGTAG
253 --GGTCAGCAGTGGAACAGACTGAGAAATACAGA-TCTTATCCCCCT-AAGCAACAGCGGAGCAG
*
81920755 ACCGAAGA-AGCAAATCTTATCT
314 ACCAAAGATAGCAAATCTTATCT
81920777 CCCTGAGGTT
Statistics
Matches: 287, Mismatches: 41, Indels: 24
0.82 0.12 0.07
Matches are distributed among these distances:
386 11 0.04
387 198 0.69
388 51 0.18
389 17 0.06
390 10 0.03
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (383 bp):
CAGCAGTGGAATAGGTTAGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCAAA
GACAGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGCC
AGCAGTGGAATAGGTTGGGAAATTACAGATCCTCTCTCCCTAAGCAATAGCGGAGCAGATCAAAG
ATACGAATCTTATCTTCAAGTGTAGAAGTAGAGTGAACCCACAAGTCCTATATCCCTGGTCAGCA
GTGGAACAGACTGAGAAATACAGATCTTATCCCCCTAAGCAACAGCGGAGCAGACCAAAGATAGC
AAATCTTATCTTCAAGTGTAAGGAAGTAGATTTAAGCCACAAGTCCTATATCCCTGGT
Found at i:81920820 original size:44 final size:43
Alignment explanation
Indices: 81920601--81920888 Score: 181
Period size: 44 Copynumber: 6.6 Consensus size: 43
81920591 ACAGATCCTC
* *
81920601 TCTCCCTGAAGTTGTAGTGGAGCAGGTTAAAGTAATAGATCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTAATA-ATCTTA
* * ** **** * *
81920645 TCTCTCTGAAGTTGCAGTAGAGTGGACCGCA-TCA-AGTCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTAATAATCTTA
* * * *
81920686 TCTCCGTGAGGTTGCAGTGGAGCAGACTGAGAA--AACAAGTCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGA-TTA-AAGTAATAA-TCTTA
* * * * *** *
81920730 TCCCCCTGAAGTTACAGTGGGGTAGACCGAAG-AAGCAAATCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTAA--TAATCTTA
* * * *
81920774 TCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGTCGATAATCCTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGT-AATAATCTTA
* *
81920818 TCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTAATA-ATCTTA
* *
81920862 TCTCTCTGAAGTTGCAGTAGAGCAGAT
1 TCTCCCTGAAGTTGCAGTGGAGCAGAT
81920889 CGCATCAAGT
Statistics
Matches: 180, Mismatches: 54, Indels: 20
0.71 0.21 0.08
Matches are distributed among these distances:
41 25 0.14
42 4 0.02
43 9 0.05
44 139 0.77
45 2 0.01
46 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.27
Consensus pattern (43 bp):
TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTAATAATCTTA
Found at i:81922346 original size:11 final size:11
Alignment explanation
Indices: 81922330--81922355 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
81922320 TTTGATTATT
81922330 ATATTTTTAAA
1 ATATTTTTAAA
81922341 ATATTTTTAAA
1 ATATTTTTAAA
81922352 ATAT
1 ATAT
81922356 GACAATTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (11 bp):
ATATTTTTAAA
Found at i:81928903 original size:22 final size:22
Alignment explanation
Indices: 81928871--81928935 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 22
81928861 TTCCAGAAAC
* *
81928871 CAGAATGGCTAAAAGCCGTAAA
1 CAGAATAGCTAAAAGCCATAAA
* * *
81928893 CAGGATAGCTATAAGCTATAAA
1 CAGAATAGCTAAAAGCCATAAA
* *
81928915 CAGAATGGCTACAAGCCATAA
1 CAGAATAGCTAAAAGCCATAA
81928936 GTACAGTATT
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.45, C:0.18, G:0.20, T:0.17
Consensus pattern (22 bp):
CAGAATAGCTAAAAGCCATAAA
Found at i:81928995 original size:32 final size:32
Alignment explanation
Indices: 81928952--81929034 Score: 112
Period size: 32 Copynumber: 2.6 Consensus size: 32
81928942 TATTATGATT
81928952 GGCACAAAGCCATCAGTAGTAGTAATATAATC
1 GGCACAAAGCCATCAGTAGTAGTAATATAATC
* * * * *
81928984 GGCACACAGCCATCAGTAATGGTAATATGATT
1 GGCACAAAGCCATCAGTAGTAGTAATATAATC
*
81929016 GGCACAAAGTCATCAGTAG
1 GGCACAAAGCCATCAGTAG
81929035 CGTCGCAGCA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 43 1.00
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.22
Consensus pattern (32 bp):
GGCACAAAGCCATCAGTAGTAGTAATATAATC
Found at i:81929070 original size:26 final size:26
Alignment explanation
Indices: 81929040--81929089 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
81929030 AGTAGCGTCG
81929040 CAGCAAAGCTGCCAGTAACAGTATCA
1 CAGCAAAGCTGCCAGTAACAGTATCA
*
81929066 CAGCAAAGCTGCCTGTAACAGTAT
1 CAGCAAAGCTGCCAGTAACAGTAT
81929090 ATGTGGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.18
Consensus pattern (26 bp):
CAGCAAAGCTGCCAGTAACAGTATCA
Found at i:81929110 original size:27 final size:26
Alignment explanation
Indices: 81929080--81929141 Score: 65
Period size: 27 Copynumber: 2.3 Consensus size: 26
81929070 AAAGCTGCCT
81929080 GTAACAGTATATGTGGCCA-AGCCACCA
1 GTAACAGTAT-TGTGG-CAGAGCCACCA
* *
81929107 GTAATAGTGATTGTGGTAGAGCCACCA
1 GTAACAGT-ATTGTGGCAGAGCCACCA
81929134 GT-ACAGTA
1 GTAACAGTA
81929142 CTTCCTCCAT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
25 1 0.03
26 5 0.17
27 22 0.73
28 2 0.07
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.23
Consensus pattern (26 bp):
GTAACAGTATTGTGGCAGAGCCACCA
Found at i:81929359 original size:24 final size:24
Alignment explanation
Indices: 81929217--81929362 Score: 184
Period size: 24 Copynumber: 6.1 Consensus size: 24
81929207 TCCGTCATAC
* **
81929217 AAATCACAGACAAATCTGTCATAC
1 AAATCACAGACAAATCAGTCATTT
* *
81929241 CAATCATAGACAAATCAGTCATTT
1 AAATCACAGACAAATCAGTCATTT
81929265 AAATCACAGACAAATCAGTCATTT
1 AAATCACAGACAAATCAGTCATTT
*
81929289 AAATCACAAACAAATCAGTCATTT
1 AAATCACAGACAAATCAGTCATTT
* * * *
81929313 ACATCTCGGACAAATCAATCATTT
1 AAATCACAGACAAATCAGTCATTT
* *
81929337 ACATCACAGACAAATCAATCATTT
1 AAATCACAGACAAATCAGTCATTT
81929361 AA
1 AA
81929363 CCTCAAGGGG
Statistics
Matches: 106, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 106 1.00
ACGTcount: A:0.45, C:0.23, G:0.07, T:0.25
Consensus pattern (24 bp):
AAATCACAGACAAATCAGTCATTT
Found at i:81929409 original size:26 final size:26
Alignment explanation
Indices: 81929380--81929520 Score: 99
Period size: 27 Copynumber: 5.3 Consensus size: 26
81929370 GGGTAAAATA
*
81929380 GTCATTTACCCT-CTAGGATCATTACG
1 GTCATTTACCCTAC-AGGAGCATTACG
*
81929406 GTCATATTACCCTACAGGGGCATTACG
1 GTCAT-TTACCCTACAGGAGCATTACG
* * *
81929433 GTTATTTCACCCTATAAGG-GCATTAAG
1 GTCATTT-ACCCTA-CAGGAGCATTACG
* * **
81929460 ATCATTTTACCCTATAAGG-GCATTATA
1 GTCA-TTTACCCTA-CAGGAGCATTACG
*
81929487 GTCATTTTACCCTACAGGGGCATTACG
1 GTCA-TTTACCCTACAGGAGCATTACG
*
81929514 GTTATTT
1 GTCATTT
81929521 TACAAATATT
Statistics
Matches: 95, Mismatches: 14, Indels: 12
0.79 0.12 0.10
Matches are distributed among these distances:
26 13 0.14
27 75 0.79
28 7 0.07
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (26 bp):
GTCATTTACCCTACAGGAGCATTACG
Found at i:81929429 original size:27 final size:27
Alignment explanation
Indices: 81929399--81929523 Score: 142
Period size: 27 Copynumber: 4.6 Consensus size: 27
81929389 CCTCTAGGAT
* *
81929399 CATTACGGTCATATTACCCTACAGGGG
1 CATTACGGTCATTTTACCCTACAAGGG
* * *
81929426 CATTACGGTTATTTCACCCTATAAGGG
1 CATTACGGTCATTTTACCCTACAAGGG
* * *
81929453 CATTAAGATCATTTTACCCTATAAGGG
1 CATTACGGTCATTTTACCCTACAAGGG
** *
81929480 CATTATAGTCATTTTACCCTACAGGGG
1 CATTACGGTCATTTTACCCTACAAGGG
*
81929507 CATTACGGTTATTTTAC
1 CATTACGGTCATTTTAC
81929524 AAATATTGGT
Statistics
Matches: 81, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 81 1.00
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.34
Consensus pattern (27 bp):
CATTACGGTCATTTTACCCTACAAGGG
Found at i:81929521 original size:54 final size:54
Alignment explanation
Indices: 81929377--81929523 Score: 145
Period size: 54 Copynumber: 2.7 Consensus size: 54
81929367 AAGGGGTAAA
** * *
81929377 ATAGTCA-TTTACCCT-CTAGGATCATTACGGTCATATTACCCTACAGGGGCATT
1 ATAGTCATTTTACCCTAC-AGGGGCATTACGGTCATTTTACCCTACAAGGGCATT
** * * * * * * *
81929430 ACGGTTATTTCACCCTATAAGGGCATTAAGATCATTTTACCCTATAAGGGCATT
1 ATAGTCATTTTACCCTACAGGGGCATTACGGTCATTTTACCCTACAAGGGCATT
*
81929484 ATAGTCATTTTACCCTACAGGGGCATTACGGTTATTTTAC
1 ATAGTCATTTTACCCTACAGGGGCATTACGGTCATTTTAC
81929524 AAATATTGGT
Statistics
Matches: 70, Mismatches: 22, Indels: 3
0.74 0.23 0.03
Matches are distributed among these distances:
53 4 0.06
54 66 0.94
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (54 bp):
ATAGTCATTTTACCCTACAGGGGCATTACGGTCATTTTACCCTACAAGGGCATT
Found at i:81929896 original size:17 final size:17
Alignment explanation
Indices: 81929874--81929915 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
81929864 TTATCTGTGT
81929874 GGCCCACAAGCCCACTA
1 GGCCCACAAGCCCACTA
*
81929891 GGCCCATAAGCCCACTA
1 GGCCCACAAGCCCACTA
81929908 GGCCCACA
1 GGCCCACA
81929916 CAACCCATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.29, C:0.45, G:0.19, T:0.07
Consensus pattern (17 bp):
GGCCCACAAGCCCACTA
Found at i:81929912 original size:9 final size:9
Alignment explanation
Indices: 81929874--81929914 Score: 50
Period size: 9 Copynumber: 4.8 Consensus size: 9
81929864 TTATCTGTGT
81929874 GGCCCAC-A
1 GGCCCACTA
*
81929882 AGCCCACTA
1 GGCCCACTA
81929891 GGCCCA-TA
1 GGCCCACTA
*
81929899 AGCCCACTA
1 GGCCCACTA
81929908 GGCCCAC
1 GGCCCAC
81929915 ACAACCCATT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
8 13 0.48
9 14 0.52
ACGTcount: A:0.27, C:0.46, G:0.20, T:0.07
Consensus pattern (9 bp):
GGCCCACTA
Found at i:81936140 original size:33 final size:33
Alignment explanation
Indices: 81936083--81936197 Score: 149
Period size: 33 Copynumber: 3.4 Consensus size: 33
81936073 ACATTTTCAG
* * * *
81936083 TCCAACCAAACACACTAGATGCTCACACGAGCCAA
1 TCCAACC-AACACACCA-ATGCTCATAAGAGCTAA
**
81936118 TCCCTCCAACACACCAATGCTCATAAGAGCTAA
1 TCCAACCAACACACCAATGCTCATAAGAGCTAA
*
81936151 TCCAACCAACACACCAATACTCATAAGAGCTAA
1 TCCAACCAACACACCAATGCTCATAAGAGCTAA
81936184 TCCAACCAACACAC
1 TCCAACCAACACAC
81936198 TAAACAGAGT
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
33 58 0.82
34 8 0.11
35 5 0.07
ACGTcount: A:0.41, C:0.37, G:0.08, T:0.14
Consensus pattern (33 bp):
TCCAACCAACACACCAATGCTCATAAGAGCTAA
Found at i:81937147 original size:21 final size:21
Alignment explanation
Indices: 81937121--81937162 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
81937111 AAAGTTACCA
81937121 TGTTTTAATTT-CACTTTAATT
1 TGTTTTAATTTCCA-TTTAATT
81937142 TGTTTTAATTTCCATTTAATT
1 TGTTTTAATTTCCATTTAATT
81937163 ATAAAATTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 18 0.90
22 2 0.10
ACGTcount: A:0.24, C:0.10, G:0.05, T:0.62
Consensus pattern (21 bp):
TGTTTTAATTTCCATTTAATT
Found at i:81939298 original size:22 final size:23
Alignment explanation
Indices: 81939273--81939320 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 23
81939263 AATGATATTT
81939273 ATGTATGGGTA-ATGTGT-ATAGC
1 ATGTAT-GGTATATGTGTAATAGC
*
81939295 ATGTATGTTATATGTGTAATAGC
1 ATGTATGGTATATGTGTAATAGC
81939318 ATG
1 ATG
81939321 ATGTGGTTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 3 0.13
22 12 0.52
23 8 0.35
ACGTcount: A:0.29, C:0.04, G:0.27, T:0.40
Consensus pattern (23 bp):
ATGTATGGTATATGTGTAATAGC
Found at i:81949234 original size:21 final size:19
Alignment explanation
Indices: 81949201--81949241 Score: 55
Period size: 21 Copynumber: 2.1 Consensus size: 19
81949191 ATGTGGACCA
*
81949201 CCTTTTTTTAATTTTTTTT
1 CCTTTTTTTAATTCTTTTT
81949220 CCTTTTTTTCGAATTCTTTTT
1 CCTTTTTTT--AATTCTTTTT
81949241 C
1 C
81949242 AAATCTAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 9 0.47
21 10 0.53
ACGTcount: A:0.10, C:0.17, G:0.02, T:0.71
Consensus pattern (19 bp):
CCTTTTTTTAATTCTTTTT
Found at i:81952174 original size:26 final size:26
Alignment explanation
Indices: 81952140--81952202 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
81952130 GGAATCAAAC
* * *
81952140 AAAAGAAAAATTAAAATGTAAAAATA
1 AAAATAAAAATAAAAATATAAAAATA
* * *
81952166 AAATTAAAAACAAAAATATTAAAATA
1 AAAATAAAAATAAAAATATAAAAATA
81952192 AAAATAAAAAT
1 AAAATAAAAAT
81952203 GGCTAAATTA
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.75, C:0.02, G:0.03, T:0.21
Consensus pattern (26 bp):
AAAATAAAAATAAAAATATAAAAATA
Found at i:81952193 original size:20 final size:21
Alignment explanation
Indices: 81952164--81952202 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
81952154 AATGTAAAAA
81952164 TAAAATTAAAAACAAAAATAT
1 TAAAATTAAAAACAAAAATAT
*
81952185 TAAAA-TAAAAATAAAAAT
1 TAAAATTAAAAACAAAAAT
81952203 GGCTAAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (21 bp):
TAAAATTAAAAACAAAAATAT
Found at i:81952195 original size:6 final size:6
Alignment explanation
Indices: 81952158--81952202 Score: 54
Period size: 6 Copynumber: 7.2 Consensus size: 6
81952148 AATTAAAATG
* *
81952158 TAAAAA TAAAAT TAAAAA CAAAAA TATTAAAA TAAAAA TAAAAA T
1 TAAAAA TAAAAA TAAAAA TAAAAA TA--AAAA TAAAAA TAAAAA T
81952203 GGCTAAATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
6 27 0.82
8 6 0.18
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (6 bp):
TAAAAA
Found at i:81961142 original size:37 final size:37
Alignment explanation
Indices: 81961087--81961161 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 37
81961077 TCACATCAAC
*
81961087 GCTGAACCGCATGAGGGTAAAGACCGTAACAAATAGA
1 GCTGAACCGCATGAGGGTAAAGACCATAACAAATAGA
* *
81961124 GCTGAACCGCATGGGGGTAAAGCCCATAACAAATAGA
1 GCTGAACCGCATGAGGGTAAAGACCATAACAAATAGA
81961161 G
1 G
81961162 GGAAAAAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.39, C:0.20, G:0.28, T:0.13
Consensus pattern (37 bp):
GCTGAACCGCATGAGGGTAAAGACCATAACAAATAGA
Found at i:81965807 original size:38 final size:38
Alignment explanation
Indices: 81965765--81965883 Score: 141
Period size: 38 Copynumber: 3.0 Consensus size: 38
81965755 GCCCATATTT
81965765 GATTAAAAATAAAAAATATATATTTAATATATAATTCG
1 GATTAAAAATAAAAAATATATATTTAATATATAATTCG
* ** * *
81965803 GATTAAAAGTCCAAAATATATATTTAATAAAAAGTATATT-T
1 GATTAAAAATAAAAAATATATATTTAAT--ATA-TA-ATTCG
81965844 GATTAAAAATAAAAATATATATATTTAATATATAATTCG
1 GATTAAAAATAAAAA-ATATATATTTAATATATAATTCG
81965883 G
1 G
81965884 GCTGGGCCAG
Statistics
Matches: 65, Mismatches: 10, Indels: 11
0.76 0.12 0.13
Matches are distributed among these distances:
38 28 0.43
39 3 0.05
40 4 0.06
41 14 0.22
42 16 0.25
ACGTcount: A:0.53, C:0.03, G:0.07, T:0.37
Consensus pattern (38 bp):
GATTAAAAATAAAAAATATATATTTAATATATAATTCG
Found at i:81967837 original size:69 final size:69
Alignment explanation
Indices: 81967751--81967890 Score: 271
Period size: 69 Copynumber: 2.0 Consensus size: 69
81967741 TGTTTAGGTT
81967751 ATGTAATGATAGCTTATTGAGTGCATTCTAATTTGTTCATTGATGGTCTATTTTTGTGAGAGAGT
1 ATGTAATGATAGCTTATTGAGTGCATTCTAATTTGTTCATTGATGGTCTATTTTTGTGAGAGAGT
81967816 GCAA
66 GCAA
*
81967820 ATGTAATGATAGCTTATTGAGTGCATTCTAATTTGTTCATTGATGGTCTATTTTTGTGATAGAGT
1 ATGTAATGATAGCTTATTGAGTGCATTCTAATTTGTTCATTGATGGTCTATTTTTGTGAGAGAGT
81967885 GCAA
66 GCAA
81967889 AT
1 AT
81967891 TGAATTGTAA
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.26, C:0.09, G:0.22, T:0.43
Consensus pattern (69 bp):
ATGTAATGATAGCTTATTGAGTGCATTCTAATTTGTTCATTGATGGTCTATTTTTGTGAGAGAGT
GCAA
Found at i:81968774 original size:21 final size:20
Alignment explanation
Indices: 81968718--81968783 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 20
81968708 ATATTTTTAT
81968718 TTTTTAATAAAAATTTTAAAA
1 TTTTTAAT-AAAATTTTAAAA
** * *
81968739 TTTTTGTTTATAATTTTAATGA
1 TTTTT-AATAAAATTTTAA-AA
81968761 TTTTTAATAAAA-TTTAAAA
1 TTTTTAATAAAATTTTAAAA
81968780 TTTT
1 TTTT
81968784 AAAAAGGTTT
Statistics
Matches: 35, Mismatches: 8, Indels: 6
0.71 0.16 0.12
Matches are distributed among these distances:
19 5 0.14
20 5 0.14
21 18 0.51
22 7 0.20
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (20 bp):
TTTTTAATAAAATTTTAAAA
Found at i:81969517 original size:5 final size:5
Alignment explanation
Indices: 81969507--81969546 Score: 80
Period size: 5 Copynumber: 8.0 Consensus size: 5
81969497 AACTTCACAT
81969507 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
81969547 CTAATTAATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 35 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:81969686 original size:36 final size:36
Alignment explanation
Indices: 81969618--81969686 Score: 88
Period size: 36 Copynumber: 1.9 Consensus size: 36
81969608 AATTTAAGGT
*
81969618 TTTATTTATTTCACTAAAAATAATTTTCAAAAATGA
1 TTTATTAATTTCACTAAAAATAATTTTCAAAAATGA
*
81969654 TTTATTAATTT-ACTAGAAAGT-ATTTTCTAAAAA
1 TTTATTAATTTCACTA-AAAATAATTTTC-AAAAA
81969687 AATTAATTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
35 10 0.34
36 19 0.66
ACGTcount: A:0.43, C:0.07, G:0.04, T:0.45
Consensus pattern (36 bp):
TTTATTAATTTCACTAAAAATAATTTTCAAAAATGA
Found at i:81979325 original size:36 final size:36
Alignment explanation
Indices: 81979274--81979346 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
81979264 CGAGGTAGGG
81979274 TATGTGTACCAAATGATTATAATCTAAGGCAGTTGA
1 TATGTGTACCAAATGATTATAATCTAAGGCAGTTGA
* * *
81979310 TATGTGTATCGAATGATTCTAATCTAAGGCAGTTGA
1 TATGTGTACCAAATGATTATAATCTAAGGCAGTTGA
81979346 T
1 T
81979347 TCTGAGGGAG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.33, C:0.11, G:0.21, T:0.36
Consensus pattern (36 bp):
TATGTGTACCAAATGATTATAATCTAAGGCAGTTGA
Found at i:81980764 original size:21 final size:21
Alignment explanation
Indices: 81980739--81980782 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
81980729 ATATTCGAGG
81980739 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
81980760 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
81980781 AT
1 AT
81980783 GTAATCTTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.39
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:81980788 original size:19 final size:19
Alignment explanation
Indices: 81980738--81980793 Score: 85
Period size: 21 Copynumber: 2.8 Consensus size: 19
81980728 AATATTCGAG
81980738 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
81980757 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
81980778 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
81980794 AGATATGATT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
19 15 0.44
21 19 0.56
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:81980800 original size:22 final size:23
Alignment explanation
Indices: 81980751--81980816 Score: 77
Period size: 23 Copynumber: 3.0 Consensus size: 23
81980741 ATGCAATCTT
*
81980751 AGATATGATATATGCAATCTT---
1 AGATATGAT-TATGTAATCTTAGA
81980772 AGATATGA-TATGTAATCTTAGA
1 AGATATGATTATGTAATCTTAGA
*
81980794 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTATGTAATCTTAGA
81980817 GATTTAATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
19 10 0.26
21 8 0.21
22 8 0.21
23 13 0.33
ACGTcount: A:0.38, C:0.06, G:0.17, T:0.39
Consensus pattern (23 bp):
AGATATGATTATGTAATCTTAGA
Found at i:81980826 original size:22 final size:23
Alignment explanation
Indices: 81980782--81980826 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
81980772 AGATATGATA
*
81980782 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
81980805 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
81980827 GTAGATACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:81981476 original size:4 final size:4
Alignment explanation
Indices: 81981426--81981492 Score: 57
Period size: 4 Copynumber: 17.0 Consensus size: 4
81981416 GATTATTTCT
* * * * * *
81981426 TTTA TTT- TTTA ATTA GTT- TTTA TTTA TATA TATA TATA TTGTT TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT-TA TTTA
81981473 TTTA TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA
81981493 AAACAAATAT
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
3 5 0.09
4 45 0.85
5 3 0.06
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (4 bp):
TTTA
Found at i:81981490 original size:25 final size:26
Alignment explanation
Indices: 81981426--81981490 Score: 80
Period size: 25 Copynumber: 2.5 Consensus size: 26
81981416 GATTATTTCT
81981426 TTTATTT-TTTAATTAGTTTTTATTTA
1 TTTATTTATTT-ATTAGTTTTTATTTA
* * *
81981452 TATATATATATATT-GTTTTTATTTA
1 TTTATTTATTTATTAGTTTTTATTTA
81981477 TTTATTTATTTATT
1 TTTATTTATTTATT
81981491 TAAAACAAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
25 22 0.69
26 8 0.25
27 2 0.06
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (26 bp):
TTTATTTATTTATTAGTTTTTATTTA
Found at i:81990727 original size:36 final size:36
Alignment explanation
Indices: 81990680--81990753 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
81990670 AAGTATATTA
81990680 AAATTTTATATTGATCATGATGGATATCTACTTAAT
1 AAATTTTATATTGATCATGATGGATATCTACTTAAT
81990716 AAATTTTATATTGATCATGATGGATATCTACTTAAT
1 AAATTTTATATTGATCATGATGGATATCTACTTAAT
81990752 AA
1 AA
81990754 GATATTCATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.38, C:0.08, G:0.11, T:0.43
Consensus pattern (36 bp):
AAATTTTATATTGATCATGATGGATATCTACTTAAT
Found at i:81991342 original size:25 final size:26
Alignment explanation
Indices: 81991314--81991368 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
81991304 AGTTATGAAT
*
81991314 TTAATAT-ATATTTATT-ATTAAAATA
1 TTAATATAAT-TTTATTCAATAAAATA
*
81991339 TTAATATAATTTTTTTCAATAAAATA
1 TTAATATAATTTTATTCAATAAAATA
81991365 TTAA
1 TTAA
81991369 GAATATTACT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 12 0.46
26 14 0.54
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (26 bp):
TTAATATAATTTTATTCAATAAAATA
Found at i:81991418 original size:19 final size:18
Alignment explanation
Indices: 81991382--81991427 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
81991372 TATTACTCAA
81991382 AATTTAAAA-TTATTATT
1 AATTTAAAATTTATTATT
*
81991399 AATGTTAAAATTTTTTATT
1 AAT-TTAAAATTTATTATT
81991418 AATTTAAAAT
1 AATTTAAAAT
81991428 CATAATATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 3 0.12
18 13 0.50
19 10 0.38
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (18 bp):
AATTTAAAATTTATTATT
Found at i:81991457 original size:21 final size:21
Alignment explanation
Indices: 81991431--81991479 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
81991421 TTAAAATCAT
* *
81991431 AATATTAAATAATTTTATTAA
1 AATATTAAATAATGTTAATAA
*
81991452 AATATTAAATTATGTTAATAA
1 AATATTAAATAATGTTAATAA
*
81991473 ATTATTA
1 AATATTA
81991480 TACTATTAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (21 bp):
AATATTAAATAATGTTAATAA
Found at i:81994629 original size:6 final size:6
Alignment explanation
Indices: 81994621--81994681 Score: 86
Period size: 6 Copynumber: 10.2 Consensus size: 6
81994611 GGTATTATTG
* * * *
81994621 TTGTTG TTGTTG TTGTTG TTGTTA TTGTTG TTGTTA TTGTTA TTGTTA
1 TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA
81994669 TTGTTA TTGTTA T
1 TTGTTA TTGTTA T
81994682 ATTTCTTTTT
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 52 1.00
ACGTcount: A:0.10, C:0.00, G:0.23, T:0.67
Consensus pattern (6 bp):
TTGTTA
Found at i:81994635 original size:12 final size:12
Alignment explanation
Indices: 81994621--81994681 Score: 95
Period size: 12 Copynumber: 5.1 Consensus size: 12
81994611 GGTATTATTG
*
81994621 TTGTTGTTGTTG
1 TTGTTGTTGTTA
81994633 TTGTTGTTGTTA
1 TTGTTGTTGTTA
81994645 TTGTTGTTGTTA
1 TTGTTGTTGTTA
*
81994657 TTGTTATTGTTA
1 TTGTTGTTGTTA
*
81994669 TTGTTATTGTTA
1 TTGTTGTTGTTA
81994681 T
1 T
81994682 ATTTCTTTTT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 47 1.00
ACGTcount: A:0.10, C:0.00, G:0.23, T:0.67
Consensus pattern (12 bp):
TTGTTGTTGTTA
Found at i:81994641 original size:18 final size:18
Alignment explanation
Indices: 81994621--81994681 Score: 95
Period size: 18 Copynumber: 3.4 Consensus size: 18
81994611 GGTATTATTG
* *
81994621 TTGTTGTTGTTGTTGTTG
1 TTGTTATTGTTGTTGTTA
81994639 TTGTTATTGTTGTTGTTA
1 TTGTTATTGTTGTTGTTA
*
81994657 TTGTTATTGTTATTGTTA
1 TTGTTATTGTTGTTGTTA
81994675 TTGTTAT
1 TTGTTAT
81994682 ATTTCTTTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 40 1.00
ACGTcount: A:0.10, C:0.00, G:0.23, T:0.67
Consensus pattern (18 bp):
TTGTTATTGTTGTTGTTA
Found at i:81999658 original size:18 final size:19
Alignment explanation
Indices: 81999621--81999658 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
81999611 AAGACTATTA
* *
81999621 AAACATGTCATCTGAGAAT
1 AAACATGTCAGCTAAGAAT
81999640 AAACAT-TCAGCTAAGAAT
1 AAACATGTCAGCTAAGAAT
81999658 A
1 A
81999659 CTATCCTTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.47, C:0.16, G:0.13, T:0.24
Consensus pattern (19 bp):
AAACATGTCAGCTAAGAAT
Found at i:82006243 original size:41 final size:41
Alignment explanation
Indices: 82006198--82006301 Score: 174
Period size: 41 Copynumber: 2.5 Consensus size: 41
82006188 GACTTTAAGT
*
82006198 CTAGCAGGCTAAGTGCCGGTGATCT-GAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGAT-TGGAATCAGGCTATAAAC
*
82006239 CTAGCAGGCTAAGTGCCGGTGATTGGAATCAGGCTATAAGC
1 CTAGCAGGCTAAGTGCCGGTGATTGGAATCAGGCTATAAAC
82006280 CTAGCAGGCTAAGTGCCGGTGA
1 CTAGCAGGCTAAGTGCCGGTGA
82006302 ATATGTTAAA
Statistics
Matches: 60, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
40 1 0.02
41 59 0.98
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (41 bp):
CTAGCAGGCTAAGTGCCGGTGATTGGAATCAGGCTATAAAC
Found at i:82006284 original size:82 final size:82
Alignment explanation
Indices: 82006144--82006301 Score: 209
Period size: 82 Copynumber: 1.9 Consensus size: 82
82006134 ATTGAAATTT
* *
82006144 TCAGGTTTAAAACCTAGCAGGCTTAAGGCCGGTGAAATAATTCGGACTTTAAGTCTAGCAGGCTA
1 TCAGGTTTAAAACCTAGCAGGCTTAAGGCCGGTGAAATAATTCGGACTATAAGCCTAGCAGGCTA
82006209 AGTGCCGGTGATCTGAA
66 AGTGCCGGTGATCTGAA
*
82006226 TCAGG-TTATAAACCTAGCAGGC-TAAGTGCCGGTG-ATTGGAA-TCAGG-CTATAAGCCTAGCA
1 TCAGGTTTA-AAACCTAGCAGGCTTAAG-GCCGGTGAAAT--AATTC-GGACTATAAGCCTAGCA
82006286 GGCTAAGTGCCGGTGA
61 GGCTAAGTGCCGGTGA
82006302 ATATGTTAAA
Statistics
Matches: 68, Mismatches: 3, Indels: 10
0.84 0.04 0.12
Matches are distributed among these distances:
81 9 0.13
82 55 0.81
83 4 0.06
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (82 bp):
TCAGGTTTAAAACCTAGCAGGCTTAAGGCCGGTGAAATAATTCGGACTATAAGCCTAGCAGGCTA
AGTGCCGGTGATCTGAA
Found at i:82006329 original size:26 final size:26
Alignment explanation
Indices: 82006298--82006347 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
82006288 CTAAGTGCCG
*
82006298 GTGAATATGTTAAATTAAGTGATTCA
1 GTGAATATGCTAAATTAAGTGATTCA
82006324 GTGAATATGCTAAATTAAGTGATT
1 GTGAATATGCTAAATTAAGTGATT
82006348 ATATGCATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.38, C:0.04, G:0.20, T:0.38
Consensus pattern (26 bp):
GTGAATATGCTAAATTAAGTGATTCA
Found at i:82007030 original size:20 final size:21
Alignment explanation
Indices: 82007005--82007043 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
82006995 ACCGACTGTT
82007005 ATAAAAAAATTAAA-AATGAA
1 ATAAAAAAATTAAATAATGAA
*
82007025 ATAAAAATATTAAATAATG
1 ATAAAAAAATTAAATAATG
82007044 TTAAGAAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.26
Consensus pattern (21 bp):
ATAAAAAAATTAAATAATGAA
Found at i:82007917 original size:35 final size:37
Alignment explanation
Indices: 82007851--82007927 Score: 88
Period size: 37 Copynumber: 2.1 Consensus size: 37
82007841 TTAAAAATAT
* *
82007851 TAAAAATATAAAAATATATAAAAACTTATAAATA-TTA
1 TAAAAATAGAAAAATATATAAAAACTCATAAA-ACTTA
* *
82007888 TAAAAATAGAAAAATCTA-ATAAA-TCATAAAACTTA
1 TAAAAATAGAAAAATATATAAAAACTCATAAAACTTA
82007923 TAAAA
1 TAAAA
82007928 TTTAATAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
34 1 0.03
35 14 0.40
36 4 0.11
37 16 0.46
ACGTcount: A:0.65, C:0.05, G:0.01, T:0.29
Consensus pattern (37 bp):
TAAAAATAGAAAAATATATAAAAACTCATAAAACTTA
Found at i:82007993 original size:9 final size:9
Alignment explanation
Indices: 82007789--82008034 Score: 100
Period size: 9 Copynumber: 27.0 Consensus size: 9
82007779 ATAAATTTTT
82007789 TTAT-AAAA
1 TTATAAAAA
*
82007797 TCAT-AAAA
1 TTATAAAAA
82007805 TTATAAAAA
1 TTATAAAAA
* *
82007814 TCAGAACAAA
1 TTATAA-AAA
*
82007824 -TATAACAA
1 TTATAAAAA
*
82007832 -TAT-TAAA
1 TTATAAAAA
82007839 -TATTAAAAA
1 TTA-TAAAAA
82007848 -TATTAAAAA
1 TTA-TAAAAA
82007857 -TATAAAAA
1 TTATAAAAA
82007865 TATATAAAAA
1 T-TATAAAAA
*
82007875 CTTATAAATA
1 -TTATAAAAA
82007885 TTATAAAAA
1 TTATAAAAA
*
82007894 -TAGAAAAA
1 TTATAAAAA
*
82007902 TCTA-ATAAA
1 T-TATAAAAA
* *
82007911 TCATAAAAC
1 TTATAAAAA
*
82007920 TTATAAAAT
1 TTATAAAAA
82007929 TTAATAAAAA
1 TT-ATAAAAA
82007939 TTA-AAAAA
1 TTATAAAAA
* *
82007947 TCGTATTAGAA
1 T--TATAAAAA
*
82007958 TTCTTAAAAAA
1 TT-AT-AAAAA
* *
82007969 TAATAAAAT
1 TTATAAAAA
*
82007978 TTGTAAAAA
1 TTATAAAAA
82007987 TTATAAAAA
1 TTATAAAAA
* *
82007996 ATATTAAAA
1 TTATAAAAA
*
82008005 TTGATATAAAC
1 TT-ATA-AAAA
82008016 TTATAAAAA
1 TTATAAAAA
*
82008025 GTATTAAAAA
1 TTA-TAAAAA
82008035 AATCATAAAA
Statistics
Matches: 180, Mismatches: 39, Indels: 36
0.71 0.15 0.14
Matches are distributed among these distances:
7 4 0.02
8 36 0.20
9 83 0.46
10 43 0.24
11 14 0.08
ACGTcount: A:0.61, C:0.04, G:0.03, T:0.31
Consensus pattern (9 bp):
TTATAAAAA
Found at i:82008003 original size:19 final size:19
Alignment explanation
Indices: 82007843--82008004 Score: 51
Period size: 19 Copynumber: 8.7 Consensus size: 19
82007833 ATTAAATATT
82007843 AAAAATATTAAAAA-TAT-
1 AAAAATATTAAAAATTATA
82007860 AAAAATATATAAAAACTTATA
1 AAAAATAT-TAAAAA-TTATA
* * *
82007881 AATATTA-TAAAAA-TA-G
1 AAAAATATTAAAAATTATA
* *
82007897 AAAAAT-CTAATAAATCATA
1 AAAAATATTAA-AAATTATA
**
82007916 AAACTTA-T-AAAATT-TA
1 AAAAATATTAAAAATTATA
*
82007932 ATAAAA-ATTAAAAAATCGTATT
1 A-AAAATATT-AAAAAT--TATA
* * *
82007954 AGAATTCTTAAAAA--ATA
1 AAAAATATTAAAAATTATA
*
82007971 ATAAAATTTGTAAAAATTATA
1 A-AAAATAT-TAAAAATTATA
82007992 AAAAATATTAAAA
1 AAAAATATTAAAA
82008005 TTGATATAAA
Statistics
Matches: 103, Mismatches: 21, Indels: 40
0.63 0.13 0.24
Matches are distributed among these distances:
16 11 0.11
17 23 0.22
18 12 0.12
19 27 0.26
20 9 0.09
21 17 0.17
22 4 0.04
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.31
Consensus pattern (19 bp):
AAAAATATTAAAAATTATA
Found at i:82008019 original size:29 final size:28
Alignment explanation
Indices: 82007962--82008033 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 28
82007952 TTAGAATTCT
*
82007962 TAAAAAATAATAAAATTTGTAAAAATTA
1 TAAAAAATATTAAAATTTGTAAAAATTA
*
82007990 TAAAAAATATTAAAA-TTGATATAAACTTA
1 TAAAAAATATTAAAATTTG-TA-AAAATTA
*
82008019 TAAAAAGTATTAAAA
1 TAAAAAATATTAAAA
82008034 AAATCATAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
27 3 0.08
28 16 0.41
29 20 0.51
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.32
Consensus pattern (28 bp):
TAAAAAATATTAAAATTTGTAAAAATTA
Found at i:82008042 original size:29 final size:29
Alignment explanation
Indices: 82007987--82008043 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
82007977 TTTGTAAAAA
**
82007987 TTATAAAAAATATTAAAATTGATATAAAC
1 TTATAAAAAATATTAAAATAAATATAAAC
*
82008016 TTATAAAAAGTATTAAAA-AAATCATAAA
1 TTATAAAAAATATTAAAATAAAT-ATAAA
82008044 AACTTGAACA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 2 0.08
29 22 0.92
ACGTcount: A:0.61, C:0.04, G:0.04, T:0.32
Consensus pattern (29 bp):
TTATAAAAAATATTAAAATAAATATAAAC
Found at i:82008464 original size:20 final size:20
Alignment explanation
Indices: 82008421--82008466 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
82008411 AGTCCAGTTC
* *
82008421 AATTTTTATGTTTTTTAAAT
1 AATTTTTATGATTTTTAAAG
*
82008441 AATTTTTATGATTTTTATAG
1 AATTTTTATGATTTTTAAAG
82008461 AATTTT
1 AATTTT
82008467 AATACATCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (20 bp):
AATTTTTATGATTTTTAAAG
Found at i:82008518 original size:20 final size:19
Alignment explanation
Indices: 82008495--82008600 Score: 60
Period size: 19 Copynumber: 5.6 Consensus size: 19
82008485 TTTAAATATG
82008495 TTTTATTAATTTTATAATTT
1 TTTTA-TAATTTTATAATTT
* **
82008515 TTTTATAA-TTTATCAGAT
1 TTTTATAATTTTATAATTT
*
82008533 TTTTATAATATTTATAA-GT
1 TTTTATAAT-TTTATAATTT
* *
82008552 TTATATTAATTTCAT-ATTT
1 TTTTA-TAATTTTATAATTT
* *
82008571 TTTAAT-ATTTAAT-ATTT
1 TTTTATAATTTTATAATTT
*
82008588 TTTAATAAATTTT
1 TTTTAT-AATTTT
82008601 TTTTCTAATT
Statistics
Matches: 68, Mismatches: 12, Indels: 13
0.73 0.13 0.14
Matches are distributed among these distances:
17 16 0.24
18 17 0.25
19 20 0.29
20 15 0.22
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (19 bp):
TTTTATAATTTTATAATTT
Found at i:82008526 original size:18 final size:18
Alignment explanation
Indices: 82008495--82008595 Score: 50
Period size: 17 Copynumber: 5.4 Consensus size: 18
82008485 TTTAAATATG
82008495 TTTTATTAATTTTATAATTT
1 TTTTA-TAA-TTTATAATTT
82008515 TTTTATAATTTATCAGATTT
1 TTTTATAATTTAT-A-ATTT
* *
82008535 TTATA-ATATTTATAA-GT
1 TTTTATA-ATTTATAATTT
*
82008552 TTATATTAATTTCAT-ATTT
1 TTTTA-TAATTT-ATAATTT
*
82008571 TTTAAT-ATTTA-ATATTT
1 TTTTATAATTTATA-ATTT
*
82008588 TTTAATAA
1 TTTTATAA
82008596 ATTTTTTTTC
Statistics
Matches: 66, Mismatches: 5, Indels: 22
0.71 0.05 0.24
Matches are distributed among these distances:
16 1 0.02
17 20 0.30
18 13 0.20
19 13 0.20
20 19 0.29
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (18 bp):
TTTTATAATTTATAATTT
Found at i:82008547 original size:38 final size:36
Alignment explanation
Indices: 82008495--82008595 Score: 93
Period size: 38 Copynumber: 2.8 Consensus size: 36
82008485 TTTAAATATG
82008495 TTTTATTAAT-TTTATAATTTTTTTATAATTTATCAGAT
1 TTTTA-TAATATTTATAATTTTTTTATAA-TT-TCAGAT
* * *
82008533 TTTTATAATATTTATAA-GTTTATATTAATTTCATAT
1 TTTTATAATATTTATAATTTTTTTA-TAATTTCAGAT
*
82008569 TTTT-TAATATTTA-ATATTTTTTAATAA
1 TTTTATAATATTTATA-ATTTTTTTATAA
82008596 ATTTTTTTTC
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
34 1 0.02
35 13 0.25
36 13 0.25
37 11 0.21
38 15 0.28
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (36 bp):
TTTTATAATATTTATAATTTTTTTATAATTTCAGAT
Found at i:82008585 original size:17 final size:17
Alignment explanation
Indices: 82008560--82008594 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
82008550 GTTTATATTA
*
82008560 ATTTCATATTTTTTAAT
1 ATTTAATATTTTTTAAT
82008577 ATTTAATATTTTTTAAT
1 ATTTAATATTTTTTAAT
82008594 A
1 A
82008595 AATTTTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (17 bp):
ATTTAATATTTTTTAAT
Found at i:82009667 original size:65 final size:65
Alignment explanation
Indices: 82009553--82009681 Score: 213
Period size: 65 Copynumber: 2.0 Consensus size: 65
82009543 AGTTTATTTT
* * *
82009553 TCAATGCATTTACAATATGGTTCCTTTAATTACATGGCTTTTTTTTGTTTGGTTGCCAAGAAAAA
1 TCAATGCACTTACAATATGGTTCCTTTAATTACATGGCTCTTTTCTGTTTGGTTGCCAAGAAAAA
* *
82009618 TCAATGCACTTACAATATGGTTTCTTTGATTACATGGCTCTTTTCTGTTTGGTTGCCAAGAAAA
1 TCAATGCACTTACAATATGGTTCCTTTAATTACATGGCTCTTTTCTGTTTGGTTGCCAAGAAAA
82009682 CATGGGAACA
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
65 59 1.00
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.42
Consensus pattern (65 bp):
TCAATGCACTTACAATATGGTTCCTTTAATTACATGGCTCTTTTCTGTTTGGTTGCCAAGAAAAA
Found at i:82010525 original size:6 final size:6
Alignment explanation
Indices: 82010512--82010552 Score: 57
Period size: 6 Copynumber: 7.0 Consensus size: 6
82010502 AATATAATAC
* *
82010512 TTAT-T TTATAT TTATAT TTGTAT TTGTAT TTATAT TTATAT
1 TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT
82010553 AACACTACCA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
5 4 0.12
6 29 0.88
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (6 bp):
TTATAT
Found at i:82014618 original size:20 final size:21
Alignment explanation
Indices: 82014568--82014619 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 21
82014558 TTATTCGTTC
* *
82014568 AATTAATATTAGATTGAATTTT
1 AATTAA-ATTAGATTGAAATTA
82014590 AA-TATAATT-GATTGAAATTA
1 AATTA-AATTAGATTGAAATTA
82014610 AATTAAATTA
1 AATTAAATTA
82014620 AAAAACTTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 7
0.74 0.06 0.21
Matches are distributed among these distances:
20 15 0.60
21 7 0.28
22 3 0.12
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (21 bp):
AATTAAATTAGATTGAAATTA
Found at i:82017350 original size:7 final size:7
Alignment explanation
Indices: 82017338--82017367 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
82017328 TCGTTGAAAC
82017338 ACCACCG
1 ACCACCG
82017345 ACCACCG
1 ACCACCG
82017352 ACCACCG
1 ACCACCG
82017359 ACCACCG
1 ACCACCG
82017366 AC
1 AC
82017368 AGTTTCTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.30, C:0.57, G:0.13, T:0.00
Consensus pattern (7 bp):
ACCACCG
Found at i:82018643 original size:13 final size:13
Alignment explanation
Indices: 82018625--82018653 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
82018615 ATTTAGTATT
82018625 TATATAATAAATA
1 TATATAATAAATA
82018638 TATATAATAAATA
1 TATATAATAAATA
82018651 TAT
1 TAT
82018654 TTTTTATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (13 bp):
TATATAATAAATA
Found at i:82019434 original size:24 final size:24
Alignment explanation
Indices: 82019384--82019431 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
82019374 AAATACTAAT
** *
82019384 ATTTATATTATTAAATTATTTGTA
1 ATTTATATTATTAAAACATTTATA
82019408 ATTTATATTA-TAAAACATTTATA
1 ATTTATATTATTAAAACATTTATA
82019431 A
1 A
82019432 ATTAAAATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (24 bp):
ATTTATATTATTAAAACATTTATA
Found at i:82023118 original size:44 final size:44
Alignment explanation
Indices: 82023055--82023668 Score: 307
Period size: 44 Copynumber: 14.1 Consensus size: 44
82023045 TCATCATTTT
* * * * * *
82023055 AATCCGCTCCGCTACAACTTCAAGGAGATAGGGTTGGTTTCTTC
1 AATCTGCTCCACTGCAACTTCAAGGAGATAAGATTGGTTTATTC
* * *
82023099 AATCTGCTCCACTGCAACTTCAGGGAAATAAGATTGGTTTATTT
1 AATCTGCTCCACTGCAACTTCAAGGAGATAAGATTGGTTTATTC
* * * *
82023143 AGTCTGCTCCACTGCAATTTC-AGAGAGATAAGACCT-G---ATGC
1 AATCTGCTCCACTGCAACTTCAAG-GAGATAAGA-TTGGTTTATTC
* ***
82023184 GATCTGC-CCTACTGCAACTTC-AGAGAGATAAGATCCATCATT-TT-
1 AATCTGCTCC-ACTGCAACTTCAAG-GAGATAAGATTGGT--TTATTC
* * *
82023228 AATCCGCTCCGCTGCAACTTCAAGGAGATAGGATTGGTTTATTC
1 AATCTGCTCCACTGCAACTTCAAGGAGATAAGATTGGTTTATTC
* * *
82023272 AATTTGC-CCTACTACAACTTCAGGGAGATAAGATTGGTTTATTC
1 AATCTGCTCC-ACTGCAACTTCAAGGAGATAAGATTGGTTTATTC
* * * * * *
82023316 AGTTTGCTCCACTGCAATTTCAGGGAGATAAGACCT-G---ATGC
1 AATCTGCTCCACTGCAACTTCAAGGAGATAAGA-TTGGTTTATTC
* * ***
82023357 AATCTGCTCTACTGCAACTTCAAAGAGATAAGATCCATCATT-TT-
1 AATCTGCTCCACTGCAACTTCAAGGAGATAAGATTGGT--TTATTC
** * * * * *
82023401 AATCCACTCCGCTGCAACTTTAGGGAGATATGATTGGTTTCTTC
1 AATCTGCTCCACTGCAACTTCAAGGAGATAAGATTGGTTTATTC
* * *
82023445 AATCTGTTCCACTACAACTTCAAAGAGATAAGATTGGTTTATTC
1 AATCTGCTCCACTGCAACTTCAAGGAGATAAGATTGGTTTATTC
* * * * * *
82023489 AGTCTACTCCGCTGTAACTTCAAGGGAGATGAA-ACCT-GATT-TT-
1 AATCTGCTCCACTGCAACTTCAA-GGAGAT-AAGA-TTGGTTTATTC
** * * * ** *
82023532 AATCCACTCCACTGCAACTTCAGGGAGATAGGATT-ATTGGCTTT
1 AATCTGCTCCACTGCAACTTCAAGGAGATAAGATTGGTT-TATTC
* * *** *
82023576 AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTCGCCATCTTC
1 AATCTGCTCCACTGCAACTTCAAGGAGATAAGA-TTGGTTTATTC
* * * * * *
82023621 AGTCTGCTCCATTGCAACTTCAGGGGGATAAGACTTGCTTTCTTC
1 AATCTGCTCCACTGCAACTTCAAGGAGATAAGA-TTGGTTTATTC
82023666 AAT
1 AAT
82023669 TTTAATGCCA
Statistics
Matches: 430, Mismatches: 107, Indels: 65
0.71 0.18 0.11
Matches are distributed among these distances:
40 2 0.00
41 62 0.14
42 11 0.03
43 27 0.06
44 261 0.61
45 64 0.15
46 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (44 bp):
AATCTGCTCCACTGCAACTTCAAGGAGATAAGATTGGTTTATTC
Found at i:82023232 original size:173 final size:173
Alignment explanation
Indices: 82023009--82023498 Score: 741
Period size: 173 Copynumber: 2.8 Consensus size: 173
82022999 AAAAGTCTGG
* * * * *
82023009 TGCGATATGCTCTATTGCAGCTTCAGAGAGATAATAT-CATCATTTTAATCCGCTCCGCTACAAC
1 TGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCCATCATTTTAATCCGCTCCGCTGCAAC
* * *
82023073 TTCAAGGAGATAGGGTTGGTTTCTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGATTGGTT
66 TTCAAGGAGATAGGATTGGTTTCTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATTGGTT
*
82023138 TATTTAGTCTGCTCCACTGCAATTTCAGAGAGATAAGACCTGA
131 TATTCAGTCTGCTCCACTGCAATTTCAGAGAGATAAGACCTGA
*
82023181 TGCGATCTGCCCTACTGCAACTTCAGAGAGATAAGATCCATCATTTTAATCCGCTCCGCTGCAAC
1 TGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCCATCATTTTAATCCGCTCCGCTGCAAC
* *
82023246 TTCAAGGAGATAGGATTGGTTTATTCAATTTGC-CCTACTACAACTTCAGGGAGATAAGATTGGT
66 TTCAAGGAGATAGGATTGGTTTCTTCAATCTGCTCC-ACTACAACTTCAGGGAGATAAGATTGGT
* *
82023310 TTATTCAGTTTGCTCCACTGCAATTTCAGGGAGATAAGACCTGA
130 TTATTCAGTCTGCTCCACTGCAATTTCAGAGAGATAAGACCTGA
* * *
82023354 TGCAATCTGCTCTACTGCAACTTCAAAGAGATAAGATCCATCATTTTAATCCACTCCGCTGCAAC
1 TGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCCATCATTTTAATCCGCTCCGCTGCAAC
* * * * **
82023419 TTTAGGGAGATATGATTGGTTTCTTCAATCTGTTCCACTACAACTTCAAAGAGATAAGATTGGTT
66 TTCAAGGAGATAGGATTGGTTTCTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATTGGTT
*
82023484 TATTCAGTCTACTCC
131 TATTCAGTCTGCTCC
82023499 GCTGTAACTT
Statistics
Matches: 287, Mismatches: 28, Indels: 5
0.90 0.09 0.02
Matches are distributed among these distances:
172 34 0.12
173 251 0.87
174 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (173 bp):
TGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCCATCATTTTAATCCGCTCCGCTGCAAC
TTCAAGGAGATAGGATTGGTTTCTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATTGGTT
TATTCAGTCTGCTCCACTGCAATTTCAGAGAGATAAGACCTGA
Found at i:82023416 original size:85 final size:85
Alignment explanation
Indices: 82023148--82023430 Score: 286
Period size: 85 Copynumber: 3.3 Consensus size: 85
82023138 TATTTAGTCT
* *
82023148 GCTCCACTGCAATTTCAGAGAGATAAGACCTGATGCGATCTGCCCTACTGCAACTTCAGAGAGAT
1 GCTCCACTGCAATTTCAGGGAGATAAGACCTGATGCAATCTGCCCTACTGCAACTTCAGAGAGAT
82023213 AAGATCCATCATTTTAATCC
66 AAGATCCATCATTTTAATCC
* * * * * * * * *
82023233 GCTCCGCTGCAACTTCAAGGAGATAGGA-TTGGTTTATTCAATTTGCCCTACTACAACTTCAGGG
1 GCTCCACTGCAATTTCAGGGAGATAAGACCT-G---ATGCAATCTGCCCTACTGCAACTTCAGAG
*** * **
82023297 AGATAAGATTGGT--TTATTCAGTTT
62 AGATAAGATCCATCATT-TT-AATCC
* *
82023321 GCTCCACTGCAATTTCAGGGAGATAAGACCTGATGCAATCTGCTCTACTGCAACTTCAAAGAGAT
1 GCTCCACTGCAATTTCAGGGAGATAAGACCTGATGCAATCTGCCCTACTGCAACTTCAGAGAGAT
82023386 AAGATCCATCATTTTAATCC
66 AAGATCCATCATTTTAATCC
* *
82023406 ACTCCGCTGCAACTTT-AGGGAGATA
1 GCTCCACTGCAA-TTTCAGGGAGATA
82023431 TGATTGGTTT
Statistics
Matches: 152, Mismatches: 36, Indels: 20
0.73 0.17 0.10
Matches are distributed among these distances:
84 1 0.01
85 78 0.51
86 7 0.05
87 4 0.03
88 61 0.40
89 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (85 bp):
GCTCCACTGCAATTTCAGGGAGATAAGACCTGATGCAATCTGCCCTACTGCAACTTCAGAGAGAT
AAGATCCATCATTTTAATCC
Found at i:82023709 original size:36 final size:36
Alignment explanation
Indices: 82023641--82023709 Score: 84
Period size: 36 Copynumber: 1.9 Consensus size: 36
82023631 ATTGCAACTT
* ** *
82023641 CAGGGGGATAAGACTTGCTTTCTTCAATTTTAATGC
1 CAGGGAGATAAGACTTGCTGCCTTCAACTTTAATGC
* *
82023677 CAGGGAGATAAGATTTGCTGCCTTCAGCTTTAA
1 CAGGGAGATAAGACTTGCTGCCTTCAACTTTAA
82023710 CCTGTTCCAC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.33
Consensus pattern (36 bp):
CAGGGAGATAAGACTTGCTGCCTTCAACTTTAATGC
Found at i:82023778 original size:51 final size:51
Alignment explanation
Indices: 82023697--82023822 Score: 137
Period size: 51 Copynumber: 2.5 Consensus size: 51
82023687 AGATTTGCTG
* * * *
82023697 CCTTCAGCTTTAACCTGTTCCACTGCAACACTAGAGAAACAAG-ATTCACTA
1 CCTTCAGCTTTAATCTGTTCCACTACAACACCAAAGAAA-AAGTATTCACTA
* * * * *
82023748 CCTTTAGCTTTAATCTGTTCCACTATAACACCAAAGAGATAGTATTCACTG
1 CCTTCAGCTTTAATCTGTTCCACTACAACACCAAAGAAAAAGTATTCACTA
* *
82023799 CCTTCAGCTTTAATCCGCTCCACT
1 CCTTCAGCTTTAATCTGTTCCACT
82023823 TCAGATTTAA
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
50 2 0.03
51 60 0.97
ACGTcount: A:0.29, C:0.29, G:0.11, T:0.30
Consensus pattern (51 bp):
CCTTCAGCTTTAATCTGTTCCACTACAACACCAAAGAAAAAGTATTCACTA
Found at i:82024029 original size:260 final size:261
Alignment explanation
Indices: 82023677--82024284 Score: 853
Period size: 260 Copynumber: 2.3 Consensus size: 261
82023667 ATTTTAATGC
* * * * * *
82023677 CAGGGAGATAAGATTTGCTGCCTTCAGCTTTAACCTGTTCCACTGCAACACTAGAGAAACAAGAT
1 CAGGGAGATAAGATTCGCTGCCTTCAGCTTTAATCTGCTCCGCTGCAACGCCAGAGAAACAAGAT
*
82023742 TCACTACCTTTAGCTTTAATCTGTTCCACTATAACACCAAAGAGATAGTATTCACTGCCTTCAGC
66 TCACTACCTTTAGCTTTAATCTGTTCCACTATAACACCAAAGAGATAGGATTCACTGCCTTCAGC
82023807 TTTAATCCGCTCCACTTCAGATTTAATCTATTCCACTGCAACGCCAGGGAAACAAGACACGCTAC
131 TTTAATCCGCTCCACTTCAGATTTAATCTATTCCACTGCAACGCCAGGGAAACAAGACACGCTAC
* * * *
82023872 ATTTAGCTTTAATCTATTCCACTACAATGTTAGGGAAATAAGATTCGCT-GCTCTCAGTCTTAAC
196 ATTTAGCTTTAATCGATTCCACTACAATGCTAGGGAAATAAGATTCACTACCT-TCAGTCTTAAC
82023936 G-
260 GT
* * *
82023937 CTAGGGAGATAAGATTCGCTGCCTT-AGCTTTAATCTGCTCTGCTACAATGCCAGAGAAACAAGA
1 C-AGGGAGATAAGATTCGCTGCCTTCAGCTTTAATCTGCTCCGCTGCAACGCCAGAGAAACAAGA
* * * * *
82024001 TTCGCTACCTTTAGCTTTAATCTGTTCCACTGTAACGCCAAGGAGATAGGATTCGCTGCCTTCAG
65 TTCACTACCTTTAGCTTTAATCTGTTCCACTATAACACCAAAGAGATAGGATTCACTGCCTTCAG
* * * * * **
82024066 CTTTAATCCGCTCTATTTCAGTTTTAATCTATTCCATTGCAATGCCAGGGAAACAAGATTCGCTA
130 CTTTAATCCGCTCCACTTCAGATTTAATCTATTCCACTGCAACGCCAGGGAAACAAGACACGCTA
* * * * *
82024131 CCTTTAGCTTTAATCGGTTCCACTACAATGCTATGGAAATAAGATTCACTACCTTTAGTCTTAAT
195 CATTTAGCTTTAATCGATTCCACTACAATGCTAGGGAAATAAGATTCACTACCTTCAGTCTTAAC
82024196 GT
260 GT
* *
82024198 CAGGGAGATAAGATTCGCTGCCTTCAGCTTTAATCTGCTCCGCTGCAACGCCAAAGAAATAAGAT
1 CAGGGAGATAAGATTCGCTGCCTTCAGCTTTAATCTGCTCCGCTGCAACGCCAGAGAAACAAGAT
* * *
82024263 TTACTGCCTTCAGCTTTAATCT
66 TCACTACCTTTAGCTTTAATCT
82024285 ACTATGACAT
Statistics
Matches: 304, Mismatches: 40, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
260 226 0.74
261 78 0.26
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (261 bp):
CAGGGAGATAAGATTCGCTGCCTTCAGCTTTAATCTGCTCCGCTGCAACGCCAGAGAAACAAGAT
TCACTACCTTTAGCTTTAATCTGTTCCACTATAACACCAAAGAGATAGGATTCACTGCCTTCAGC
TTTAATCCGCTCCACTTCAGATTTAATCTATTCCACTGCAACGCCAGGGAAACAAGACACGCTAC
ATTTAGCTTTAATCGATTCCACTACAATGCTAGGGAAATAAGATTCACTACCTTCAGTCTTAACG
T
Found at i:82024257 original size:87 final size:90
Alignment explanation
Indices: 82024106--82024361 Score: 257
Period size: 87 Copynumber: 2.8 Consensus size: 90
82024096 ATTCCATTGC
* * * * * * * *
82024106 AATGCCAGGGAAACAAGATTCGCTACCTTTAGCTTTAATCGGTTCCACTACAATGCTATGGAAAT
1 AATGTCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCTAAGGAAAT
* *
82024171 AAGATTCACTACCTTTAG-T-CT-T
66 AAGATTCACTACCTTCAGTTAATCT
* * * * *
82024193 AATGTCAGGGAGATAAGATTCGCTGCCTTCAGCTTTAATCTGCTCCGCTGCAACGCCAAAGAAAT
1 AATGTCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCTAAGGAAAT
* *
82024258 AAGATTTACTGCCTTCAGCTTTAATCT
66 AAGATTCACTACCTTCAG--TTAATCT
* *
82024285 ACTATGACATCAGGGAAATAAGATTCGTTGCTTTCAGCTTTAATCTGTTCCACTGCAACGCTAAG
1 A--ATG---TCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCTAAG
82024350 GAAATAAGATTC
61 GAAATAAGATTC
82024362 GTTATGATAA
Statistics
Matches: 134, Mismatches: 25, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
87 67 0.50
90 1 0.01
91 1 0.01
92 2 0.01
94 3 0.02
97 60 0.45
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (90 bp):
AATGTCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCTAAGGAAAT
AAGATTCACTACCTTCAGTTAATCT
Found at i:82024364 original size:51 final size:51
Alignment explanation
Indices: 82024205--82024362 Score: 157
Period size: 51 Copynumber: 3.2 Consensus size: 51
82024195 TGTCAGGGAG
* * * *
82024205 ATAAGATTCGCTGCCTTCAGCTTTAATCTGCTCCGCTGCAACGCCAAAGAA
1 ATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCTAAGGAA
** * * * *
82024256 ATAAGATTTACTGCCTTCAGCTTTAATC--TACTA-TG--AC-ATCAGGGAA
1 ATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCT-AAGGAA
* *
82024302 ATAAGATTCGTTGCTTTCAGCTTTAATCTGTTCCACTGCAACGCTAAGGAA
1 ATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCTAAGGAA
82024353 ATAAGATTCG
1 ATAAGATTCG
82024363 TTATGATAAC
Statistics
Matches: 82, Mismatches: 18, Indels: 14
0.72 0.16 0.12
Matches are distributed among these distances:
46 30 0.37
48 5 0.06
49 3 0.04
51 43 0.52
52 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (51 bp):
ATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCTAAGGAA
Found at i:82024713 original size:24 final size:24
Alignment explanation
Indices: 82024668--82024730 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
82024658 CGAATTGCCC
*
82024668 CCACTATAATCTTCAAGATTCAAT
1 CCACTGTAATCTTCAAGATTCAAT
* * *
82024692 CCTCTGTAATCTTTAAGGTTCAAT
1 CCACTGTAATCTTCAAGATTCAAT
*
82024716 CCACTGTAATTTTCA
1 CCACTGTAATCTTCA
82024731 GACATAAAAT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.30, C:0.24, G:0.08, T:0.38
Consensus pattern (24 bp):
CCACTGTAATCTTCAAGATTCAAT
Found at i:82043462 original size:41 final size:41
Alignment explanation
Indices: 82043428--82043613 Score: 293
Period size: 41 Copynumber: 4.5 Consensus size: 41
82043418 ACCGACAGTT
* *
82043428 AGCCTGTTAGA-GATAAAGTCTGATATGTTTCACCGGCATCA
1 AGCCTGCTAGACG-TAAAGTCTGGTATGTTTCACCGGCATCA
82043469 AGCCTGCTAGACGTAAAGTCTGGTATGTTTCACCGGCATCA
1 AGCCTGCTAGACGTAAAGTCTGGTATGTTTCACCGGCATCA
*
82043510 AGCCTGCTAGACGTAAAGTCTGGTCTGTTTCACCGGCATCA
1 AGCCTGCTAGACGTAAAGTCTGGTATGTTTCACCGGCATCA
*
82043551 AGCCTGCTAGACGTAATGTCTGGTATGTTTCACCGGCATCA
1 AGCCTGCTAGACGTAAAGTCTGGTATGTTTCACCGGCATCA
* * *
82043592 AGCCTACTGGACGTAATGTCTG
1 AGCCTGCTAGACGTAAAGTCTG
82043614 AATTACTTTA
Statistics
Matches: 137, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
41 136 0.99
42 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (41 bp):
AGCCTGCTAGACGTAAAGTCTGGTATGTTTCACCGGCATCA
Found at i:82046591 original size:21 final size:21
Alignment explanation
Indices: 82046565--82046678 Score: 70
Period size: 21 Copynumber: 5.4 Consensus size: 21
82046555 CCAGAAGGGT
*
82046565 TGAACGAAAGCTCATAATAGC
1 TGAACGAAAGCTCATAAGAGC
* * *
82046586 TGAACGGAAA-CCCATAAGGGT
1 TGAAC-GAAAGCTCATAAGAGC
* * *
82046607 TAAACAAAAGCTCAAAAGAGC
1 TGAACGAAAGCTCATAAGAGC
* * * *
82046628 TGAACGAAAACTTATATGAGT
1 TGAACGAAAGCTCATAAGAGC
* *
82046649 TGAAC-AGAAGCTCATGAGAGT
1 TGAACGA-AAGCTCATAAGAGC
*
82046670 TAAACGAAA
1 TGAACGAAA
82046679 AGTAAACATG
Statistics
Matches: 67, Mismatches: 22, Indels: 8
0.69 0.23 0.08
Matches are distributed among these distances:
20 4 0.06
21 58 0.87
22 5 0.07
ACGTcount: A:0.46, C:0.16, G:0.21, T:0.18
Consensus pattern (21 bp):
TGAACGAAAGCTCATAAGAGC
Found at i:82046605 original size:42 final size:42
Alignment explanation
Indices: 82046550--82046638 Score: 124
Period size: 42 Copynumber: 2.1 Consensus size: 42
82046540 AAGTGCTAAA
* * * *
82046550 AAAACCCAGAAGGGTTGAACGAAAGCTCATAATAGCTGAACG
1 AAAACCCAGAAGGGTTAAACAAAAGCTCAAAAGAGCTGAACG
* *
82046592 GAAACCCATAAGGGTTAAACAAAAGCTCAAAAGAGCTGAACG
1 AAAACCCAGAAGGGTTAAACAAAAGCTCAAAAGAGCTGAACG
82046634 AAAAC
1 AAAAC
82046639 TTATATGAGT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.47, C:0.19, G:0.21, T:0.12
Consensus pattern (42 bp):
AAAACCCAGAAGGGTTAAACAAAAGCTCAAAAGAGCTGAACG
Found at i:82046660 original size:42 final size:42
Alignment explanation
Indices: 82046525--82046662 Score: 111
Period size: 42 Copynumber: 3.3 Consensus size: 42
82046515 GCTCGAAGGC
* * * * * *
82046525 TGAACAGAAGCACATAAGTGCT-AA-AAAAACCCAGAAGGGT
1 TGAACAGAAGCTCAAAAGAGCTGAACGAAAACCCATAAGAGT
* * * *
82046565 TGAAC-GAAAGCTCATAATAGCTGAACGGAAACCCATAAGGGT
1 TGAACAG-AAGCTCAAAAGAGCTGAACGAAAACCCATAAGAGT
* * ** *
82046607 TAAACAAAAGCTCAAAAGAGCTGAACGAAAACTTATATGAGT
1 TGAACAGAAGCTCAAAAGAGCTGAACGAAAACCCATAAGAGT
82046649 TGAACAGAAGCTCA
1 TGAACAGAAGCTCA
82046663 TGAGAGTTAA
Statistics
Matches: 77, Mismatches: 17, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
39 1 0.01
40 17 0.22
41 2 0.03
42 57 0.74
ACGTcount: A:0.46, C:0.17, G:0.21, T:0.16
Consensus pattern (42 bp):
TGAACAGAAGCTCAAAAGAGCTGAACGAAAACCCATAAGAGT
Found at i:82056509 original size:38 final size:37
Alignment explanation
Indices: 82056459--82056642 Score: 140
Period size: 38 Copynumber: 4.7 Consensus size: 37
82056449 ATAGTATTAT
*
82056459 ATATTATG-ATTTTATTAAATTCATATAAGAATATTTA
1 ATATTAAGAATTTTATTAAATT-ATATAAGAATATTTA
**** *
82056496 ATATTAAGAATTTTATTAAATTATATATTTTTATTAAATT
1 ATATTAAGAATTTTATTAAATTATATAAGAATATT---TA
* * * *
82056536 ATATTTAATAATAATTATTTTAAATTATATTA-TATAGTATTA
1 ATA-TTAAGAAT--TT-TATTAAATTATATAAGAATA-T-TTA
*
82056578 TATATTATG-ATTTTATTAAATTCATATAAGAATATTTA
1 -ATATTAAGAATTTTATTAAATT-ATATAAGAATATTTA
82056616 ATATTAAGAATTTTATTAAATTATATA
1 ATATTAAGAATTTTATTAAATTATATA
82056643 TTTTTATTAA
Statistics
Matches: 115, Mismatches: 18, Indels: 28
0.71 0.11 0.17
Matches are distributed among these distances:
37 28 0.24
38 37 0.32
39 8 0.07
40 7 0.06
41 9 0.08
42 4 0.03
43 8 0.07
44 13 0.11
45 1 0.01
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (37 bp):
ATATTAAGAATTTTATTAAATTATATAAGAATATTTA
Found at i:82056527 original size:18 final size:18
Alignment explanation
Indices: 82056506--82056659 Score: 76
Period size: 18 Copynumber: 8.9 Consensus size: 18
82056496 ATATTAAGAA
82056506 TTTTATTAAATTATATAT
1 TTTTATTAAATTATATAT
82056524 TTTTATTAAA-T-TATA-
1 TTTTATTAAATTATATAT
* *
82056539 -TTTAAT-AATAAT-TAT
1 TTTTATTAAATTATATAT
* * *
82056554 TTTAAATTATATTATATAG
1 TTT-TATTAAATTATATAT
* * *
82056573 TATTA-TATATTAT-GA-
1 TTTTATTAAATTATATAT
*
82056588 TTTTATTAAATTCATATAA
1 TTTTATTAAATT-ATATAT
*** * *
82056607 GAATATTTAATATTA-AGAA
1 TTTTA-TTAA-ATTATATAT
82056626 TTTTATTAAATTATATAT
1 TTTTATTAAATTATATAT
82056644 TTTTATTAAATTATAT
1 TTTTATTAAATTATAT
82056660 TTAATAATAA
Statistics
Matches: 100, Mismatches: 22, Indels: 28
0.67 0.15 0.19
Matches are distributed among these distances:
13 2 0.02
14 7 0.07
15 5 0.05
16 12 0.12
17 17 0.17
18 38 0.38
19 11 0.11
20 5 0.05
21 3 0.03
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.55
Consensus pattern (18 bp):
TTTTATTAAATTATATAT
Found at i:82056580 original size:120 final size:120
Alignment explanation
Indices: 82056441--82056800 Score: 589
Period size: 120 Copynumber: 3.0 Consensus size: 120
82056431 ATTATTAATC
82056441 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
1 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
82056506 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAAT
66 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAAT
82056561 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
1 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
*
82056626 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAT
66 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAAT
* * * * * * *
82056681 TATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAATAA
1 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
* * *
82056746 TATTATTAAATTATATA-TTTAATTATAA-TATATTTAATAATTATTATGTTTAAAT
66 TTTTATTAAATTATATATTTTTATTA-AATTATATTTAATAATAATTAT-TTTAAAT
82056801 ATGATTAAAT
Statistics
Matches: 226, Mismatches: 12, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
119 25 0.11
120 201 0.89
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.51
Consensus pattern (120 bp):
TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAAT
Found at i:82056764 original size:31 final size:29
Alignment explanation
Indices: 82056729--82056821 Score: 79
Period size: 27 Copynumber: 3.3 Consensus size: 29
82056719 TCATATAAGA
82056729 ATATTGATTATTAATAATATTATTAAATTAT
1 ATATT-ATTATT-ATAATATTATTAAATTAT
* * *
82056760 ATATT-TAATTATAATA-TATTTAATAAT
1 ATATTATTATTATAATATTATTAAATTAT
*
82056787 -TATTATGT-TTA-AATATGATTAAATTAT
1 ATATTAT-TATTATAATATTATTAAATTAT
*
82056814 TTATTATT
1 ATATTATT
82056822 GATATTAATA
Statistics
Matches: 51, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
26 8 0.16
27 22 0.43
28 12 0.24
29 4 0.08
31 5 0.10
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (29 bp):
ATATTATTATTATAATATTATTAAATTAT
Found at i:82057037 original size:16 final size:16
Alignment explanation
Indices: 82057016--82057083 Score: 127
Period size: 16 Copynumber: 4.2 Consensus size: 16
82057006 GATTTGCTAT
82057016 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
82057032 TACACCTCTAATCCAT
1 TACACCTCTAATCCAA
82057048 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
82057064 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
82057080 TACA
1 TACA
82057084 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.37, C:0.37, G:0.00, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:82057304 original size:18 final size:18
Alignment explanation
Indices: 82057283--82057326 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
82057273 TTTTATCTTT
*
82057283 CATGTTCGTTTTACGGTC
1 CATGTTCATTTTACGGTC
*
82057301 CATGTTCATTTTACGGTT
1 CATGTTCATTTTACGGTC
82057319 CATGTTCA
1 CATGTTCA
82057327 AGGTTCGTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.16, C:0.20, G:0.18, T:0.45
Consensus pattern (18 bp):
CATGTTCATTTTACGGTC
Found at i:82062537 original size:66 final size:66
Alignment explanation
Indices: 82062398--82062530 Score: 266
Period size: 66 Copynumber: 2.0 Consensus size: 66
82062388 TGAACTTGAA
82062398 AACATGATGTATTTGATTATAGTAGCTTCGGTATGTGAAGGGTATGTTAGATATTAGATTGGTGA
1 AACATGATGTATTTGATTATAGTAGCTTCGGTATGTGAAGGGTATGTTAGATATTAGATTGGTGA
82062463 G
66 G
82062464 AACATGATGTATTTGATTATAGTAGCTTCGGTATGTGAAGGGTATGTTAGATATTAGATTGGTGA
1 AACATGATGTATTTGATTATAGTAGCTTCGGTATGTGAAGGGTATGTTAGATATTAGATTGGTGA
82062529 G
66 G
82062530 A
1 A
82062531 TTATGATTAA
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 67 1.00
ACGTcount: A:0.29, C:0.05, G:0.29, T:0.38
Consensus pattern (66 bp):
AACATGATGTATTTGATTATAGTAGCTTCGGTATGTGAAGGGTATGTTAGATATTAGATTGGTGA
G
Found at i:82072803 original size:4 final size:4
Alignment explanation
Indices: 82072796--82072832 Score: 56
Period size: 4 Copynumber: 9.0 Consensus size: 4
82072786 AAATAAATAT
*
82072796 GAAA GAAA GAAA GAAA GAAA GAAA GAACA TAAA GAAA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAA-A GAAA GAAA
82072833 AAGGGAAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 27 0.90
5 3 0.10
ACGTcount: A:0.73, C:0.03, G:0.22, T:0.03
Consensus pattern (4 bp):
GAAA
Found at i:82073286 original size:26 final size:27
Alignment explanation
Indices: 82073257--82073326 Score: 74
Period size: 25 Copynumber: 2.7 Consensus size: 27
82073247 ATTTGTTAAA
* * *
82073257 ATATTAAATAATATTTATTATATAT-T
1 ATATTAAATAATATTAAATAAATATGT
*
82073283 ATATT-ATTAA-ATATAAATAAATATGT
1 ATATTAAATAATAT-TAAATAAATATGT
82073309 ATATTAAATAATATTAAA
1 ATATTAAATAATATTAAA
82073327 AATTAATATT
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
24 2 0.06
25 12 0.34
26 11 0.31
27 8 0.23
28 2 0.06
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (27 bp):
ATATTAAATAATATTAAATAAATATGT
Found at i:82073323 original size:36 final size:36
Alignment explanation
Indices: 82073214--82073324 Score: 101
Period size: 36 Copynumber: 3.1 Consensus size: 36
82073204 AAAATTTAAA
82073214 ATTATTATAAATATTAGAAT--T-TTATATTAAATAAT
1 ATTATTA-AAATATTA-AATAATATTATATTAAATAAT
* *
82073249 -TTGTTAAAATATTAAATAATATT-TATTATATATTAT
1 ATTATTAAAATATTAAATAATATTATATTA-A-ATAAT
82073285 ATTATT-AAATA-TAAATAAATATGTATATTAAATAAT
1 ATTATTAAAATATTAAAT-AATAT-TATATTAAATAAT
82073321 ATTA
1 ATTA
82073325 AAAATTAATA
Statistics
Matches: 63, Mismatches: 4, Indels: 17
0.75 0.05 0.20
Matches are distributed among these distances:
32 3 0.05
33 8 0.13
34 11 0.17
35 8 0.13
36 22 0.35
37 6 0.10
38 5 0.08
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.48
Consensus pattern (36 bp):
ATTATTAAAATATTAAATAATATTATATTAAATAAT
Found at i:82073539 original size:5 final size:5
Alignment explanation
Indices: 82073529--82073564 Score: 72
Period size: 5 Copynumber: 7.2 Consensus size: 5
82073519 AAGATGATAC
82073529 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA A
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA A
82073565 AGAAATTCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
ATAAA
Found at i:82082599 original size:59 final size:60
Alignment explanation
Indices: 82082496--82082633 Score: 199
Period size: 59 Copynumber: 2.3 Consensus size: 60
82082486 TGAAAGCGCG
* * *
82082496 TGAAAGCTCTCTAAAAGTTGAGTGACAAAATTGCAAGGATTTCATTTTGGGTGACCAAAA
1 TGAAAGGTCCCTAAAAGTTGACTGACAAAATTGCAAGGATTTCATTTTGGGTGACCAAAA
* * *
82082556 TGAAAGGTCCCTAAAAGTTG-CTGACGAGATTGCAAGGATTTCATTTTTGGTGACCAAAA
1 TGAAAGGTCCCTAAAAGTTGACTGACAAAATTGCAAGGATTTCATTTTGGGTGACCAAAA
82082615 TGAAAGAGT-CCTAAAAGTT
1 TGAAAG-GTCCCTAAAAGTT
82082634 TGGAGACCAA
Statistics
Matches: 71, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
59 51 0.72
60 20 0.28
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (60 bp):
TGAAAGGTCCCTAAAAGTTGACTGACAAAATTGCAAGGATTTCATTTTGGGTGACCAAAA
Found at i:82083314 original size:22 final size:22
Alignment explanation
Indices: 82083289--82083331 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
82083279 TCAAAGGTTG
*
82083289 ATTTTGATTTGCAACCAATTTT
1 ATTTTGATTTGAAACCAATTTT
82083311 ATTTTGATTTGAAACCAATTT
1 ATTTTGATTTGAAACCAATTT
82083332 ACCCTGTGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.30, C:0.12, G:0.09, T:0.49
Consensus pattern (22 bp):
ATTTTGATTTGAAACCAATTTT
Found at i:82084602 original size:89 final size:89
Alignment explanation
Indices: 82084440--82084666 Score: 312
Period size: 89 Copynumber: 2.6 Consensus size: 89
82084430 TTCTAGAGAA
* * * ** * *
82084440 ATTACTATTCAAAAAT-TTTGTATTATTTTTGTATCTGTAAATCAAATTTATTCTGTATTATTTG
1 ATTAATATTCTAAAATGTTTGTATT-TTCTTGTATCTGTAAATTTAATTTAGTCCGTATTATTTG
*
82084504 TTGTTCAAATTTTATATTTTTATGT
65 TTGTTCAAATTTTATATTTTCATGT
* * * *
82084529 ATTCATTTTTTAAAATGTTTGTATTTTCTTGTATCTGAAAATTTAATTTAGTCCGTATTATTTGT
1 ATTAATATTCTAAAATGTTTGTATTTTCTTGTATCTGTAAATTTAATTTAGTCCGTATTATTTGT
82084594 TGTTCAAATTTTATATTTTCATGT
66 TGTTCAAATTTTATATTTTCATGT
* *
82084618 ATTAATATTCTAGAATGTTTGTATTTTCTTGTATATGTAAATTTAATTT
1 ATTAATATTCTAAAATGTTTGTATTTTCTTGTATCTGTAAATTTAATTT
82084667 CTTGCGTATT
Statistics
Matches: 119, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
89 111 0.93
90 8 0.07
ACGTcount: A:0.28, C:0.07, G:0.09, T:0.56
Consensus pattern (89 bp):
ATTAATATTCTAAAATGTTTGTATTTTCTTGTATCTGTAAATTTAATTTAGTCCGTATTATTTGT
TGTTCAAATTTTATATTTTCATGT
Found at i:82087078 original size:93 final size:94
Alignment explanation
Indices: 82086857--82087156 Score: 397
Period size: 93 Copynumber: 3.1 Consensus size: 94
82086847 TTAAAGGAAA
* * * * *
82086857 AAAAATTAAATAAATAAGGGTTTAGGGTTTCTTAATTAAATTAATTATAAATTTTAAAAAATTAG
1 AAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTATAAA-TTTAAAAAATTAG
*
82086922 ATTAGGGTTTAGTGTTTATGGTTTTTAAGG
65 ATTAGGGTTTAGTGTTTAGGGTTTTTAAGG
* *
82086952 AAAAATCAAATAAATTAGGGTTTAAGGTAACTTGAGTAAATTAATTATAAA-TTAAAAAA-TAGA
1 AAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTATAAATTTAAAAAATTAGA
*
82087015 TTAGGGTTTAGGGTTTAGGGTTTTTAAGG
66 TTAGGGTTTAGTGTTTAGGGTTTTTAAGG
* *
82087044 AAAAAATTAAATAAATTAGTGTTTAGGGTTACTTGAGTAAATTAATTATAAATTTTAAAAAAAAA
1 -AAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTATAAA-TTT---AAAAAA
* * * *
82087109 TTAAATTGGGGTTTAGTATTTAGAGTTTTTAAGG
61 TTAGATTAGGGTTTAGTGTTTAGGGTTTTTAAGG
82087143 AAAAATCAAATAAA
1 AAAAATCAAATAAA
82087157 GCTAGTTGTT
Statistics
Matches: 179, Mismatches: 19, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
92 31 0.17
93 55 0.31
95 46 0.26
98 19 0.11
99 28 0.16
ACGTcount: A:0.44, C:0.02, G:0.17, T:0.38
Consensus pattern (94 bp):
AAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTATAAATTTAAAAAATTAGA
TTAGGGTTTAGTGTTTAGGGTTTTTAAGG
Found at i:82087978 original size:40 final size:41
Alignment explanation
Indices: 82087907--82088002 Score: 110
Period size: 40 Copynumber: 2.4 Consensus size: 41
82087897 AAGTGCTTCC
*
82087907 TCAAGGAAGCG-CTTTGTCCACATGGACACAAAGCGC-ACCT
1 TCAAGGAAGCGTTTTTGTCCACATGGA-ACAAAGCGCTACCT
* *
82087947 TCAAGGAAGCGTTTTCTGTCCACGTGG-ACAAAGCGCTTCCT
1 TCAAGGAAGCGTTTT-TGTCCACATGGAACAAAGCGCTACCT
*
82087988 T-GAGGAAGCGTTTTT
1 TCAAGGAAGCGTTTTT
82088003 CTGCCTTATC
Statistics
Matches: 49, Mismatches: 4, Indels: 7
0.82 0.07 0.12
Matches are distributed among these distances:
39 1 0.02
40 32 0.65
41 6 0.12
42 10 0.20
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (41 bp):
TCAAGGAAGCGTTTTTGTCCACATGGAACAAAGCGCTACCT
Found at i:82088462 original size:135 final size:135
Alignment explanation
Indices: 82088130--82089092 Score: 1293
Period size: 135 Copynumber: 7.1 Consensus size: 135
82088120 TTATTTGCCC
* * * *
82088130 TAAAACTCCATTTTTCAGGTCAATTTTTTTTTTCATTTCAATTTCTTCTTAAAATTCATTCGAAT
1 TAAAACTTCATTTGTCATGTCAA--TTTTTTTTCATTTCAATTTCTTCTTAAAATTCATTTGAAT
* *
82088195 TTCATTTTTTTCTCATGTTATTTGAATTTCATTTCAATTTAAATTTCATTTTCACTTTTTTTTAT
64 TTCATTTTTTTCTCATGTTATTTGAATTTCATTTCAATTTGAATTTCA-TTTCACTTTTTTTT-C
82088260 TTTTTTAAT
127 TTTTTTAAT
* * * *
82088269 TTAAACTTCATTTGTGATGTCAATTTTTTTTCATTTTAATTTTTTTCTTAAAATTCATTTGAATT
1 TAAAACTTCATTTGTCATGTCAATTTTTTTTCATTTCAA-TTTCTTCTTAAAATTCATTTGAATT
* * * * *
82088334 TCA-ATTTTTCTCATGTTATTTAAATTTCATTTAAATTTTAATTTCATTTCACTTTTTTTCCTTT
65 TCATTTTTTTCTCATGTTATTTGAATTTCATTTCAATTTGAATTTCATTTCACTTTTTTTTCTTT
82088398 TTTAAT
130 TTTAAT
82088404 TAAAACTTCATTTGTCATGTCAATTTTTTTTTCATTTCAATTTCTTCTTAAAATTCATTTGAATT
1 TAAAACTTCATTTGTCATGTCAA-TTTTTTTTCATTTCAATTTCTTCTTAAAATTCATTTGAATT
* *
82088469 TCATTTTTTTTCTCAAGTTATTTGAATTTCATTTCAATTTGAATTTCATTTCACTTTTTTTTTAT
65 TCA-TTTTTTTCTCATGTTATTTGAATTTCATTTCAATTTGAATTTCATTTCAC-TTTTTTTTCT
82088534 TTTTTAAT
128 TTTTTAAT
* * * *
82088542 TAAAACTTCATTTGTTATGTCAAATTTTTTTCATTTTAATTTTTTTCTTAAAATTCATTTGAATT
1 TAAAACTTCATTTGTCATGTCAATTTTTTTTCATTTCAA-TTTCTTCTTAAAATTCATTTGAATT
* * *
82088607 TCA-TTTTTTCTCAGGTTATTTAAATTTCATTTCAATTTTAATTTCATTTCAC-TTTTTTTCTTT
65 TCATTTTTTTCTCATGTTATTTGAATTTCATTTCAATTTGAATTTCATTTCACTTTTTTTTCTTT
82088670 TTTAAT
130 TTTAAT
*
82088676 TAAAACTTCATTTGTCATGTCAATTTTTTTTCATTTCAATTTCTTCTTAAAATTCGTTTGAATTT
1 TAAAACTTCATTTGTCATGTCAATTTTTTTTCATTTCAATTTCTTCTTAAAATTCATTTGAATTT
*
82088741 CATTTTTTTTCTCATGTTATTTGAATTTCATTTTAATTTGAATTTCATTTCACTTTTTTTTCTTT
66 CA-TTTTTTTCTCATGTTATTTGAATTTCATTTCAATTTGAATTTCATTTCACTTTTTTTTCTTT
82088806 TTTAAT
130 TTTAAT
* * * *
82088812 TAAAAAATT-ATTTCTTATGTCAA-TTTTTTTCCTTTCAATTTCTTCTTAAAATTCATTTGAA-T
1 T-AAAACTTCATTTGTCATGTCAATTTTTTTTCATTTCAATTTCTTCTTAAAATTCATTTGAATT
***
82088874 T--TTTTTTTCTCATGTTATTTTTTTTCTCATGTT--ATTTGAATTTCATTTCACTTTTTTTTTC
65 TCATTTTTTTCTCATGTTATTTGAATT-TCAT-TTCAATTTGAATTTCATTTCAC-TTTTTTTTC
82088935 TTTTTTAAT
127 TTTTTTAAT
* * * * * * *
82088944 TAAAATTTTATTTCTCATGTCAATTTTTTTTTCATTGCAATTTCTTTTTAAATTTAATTTGAATT
1 TAAAACTTCATTTGTCATGTCAA-TTTTTTTTCATTTCAATTTCTTCTTAAAATTCATTTGAATT
* * * *
82089009 TCATGATTTTTCTCATGTTATTTGAATTTCATTTAAATTTTAATTTCATTTCAC--TTTTTTATT
65 TCAT-TTTTTTCTCATGTTATTTGAATTTCATTTCAATTTGAATTTCATTTCACTTTTTTTTCTT
82089072 TTTTAAT
129 TTTTAAT
*
82089079 TAAACCTTCATTTG
1 TAAAACTTCATTTG
82089093 AATTTCATTT
Statistics
Matches: 735, Mismatches: 67, Indels: 48
0.86 0.08 0.06
Matches are distributed among these distances:
131 45 0.06
132 36 0.05
133 28 0.04
134 87 0.12
135 165 0.22
136 106 0.14
137 123 0.17
138 127 0.17
139 18 0.02
ACGTcount: A:0.24, C:0.12, G:0.04, T:0.60
Consensus pattern (135 bp):
TAAAACTTCATTTGTCATGTCAATTTTTTTTCATTTCAATTTCTTCTTAAAATTCATTTGAATTT
CATTTTTTTCTCATGTTATTTGAATTTCATTTCAATTTGAATTTCATTTCACTTTTTTTTCTTTT
TTAAT
Found at i:82088508 original size:17 final size:17
Alignment explanation
Indices: 82088488--82088521 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
82088478 TTCTCAAGTT
82088488 ATTTGAATTTCATTTCA
1 ATTTGAATTTCATTTCA
82088505 ATTTGAATTTCATTTCA
1 ATTTGAATTTCATTTCA
82088522 CTTTTTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.12, G:0.06, T:0.53
Consensus pattern (17 bp):
ATTTGAATTTCATTTCA
Found at i:82088618 original size:273 final size:270
Alignment explanation
Indices: 82088130--82089092 Score: 1433
Period size: 273 Copynumber: 3.6 Consensus size: 270
82088120 TTATTTGCCC
* * * *
82088130 TAAAACTCCATTTTTCAGGTCAATTTTTTTTTTCATTTCAATTTCTTCTTAAAATTCATTCGAAT
1 TAAAACTTCATTTGTCATGTCAA-TTTTTTTTTCATTTCAATTTCTTCTTAAAATTCATTTGAAT
*
82088195 TTCA-TTTTTTTCTCATGTTATTTGAATTTCATTTCAATTTAAATTTCATTTTCACTTTTTTTTA
65 TTCATTTTTTTTCTCATGTTATTTGAATTTCATTTCAATTTGAATTTCA-TTTCACTTTTTTTTA
* * *
82088259 TTTTTTTAATTTAAACTTCATTTGTGATGTCAATTTTTTTTCATTTTAATTTTTTTCTTAAAATT
129 -TTTTTTAATTAAAACTTCATTTGTTATGTCAAATTTTTTTCATTTTAATTTTTTTCTTAAAATT
*
82088324 CATTTGAATTTCAATTTTTCTCATGTTATTTAAATTTCATTTAAATTTTAATTTCATTTCACTTT
193 CATTTGAATTTCATTTTTTCTCATGTTATTTAAATTTCATTT-AATTTTAATTTCATTTCACTTT
82088389 TTTTCCTTTTTTAAT
257 TTTT-CTTTTTTAAT
82088404 TAAAACTTCATTTGTCATGTCAATTTTTTTTTCATTTCAATTTCTTCTTAAAATTCATTTGAATT
1 TAAAACTTCATTTGTCATGTCAATTTTTTTTTCATTTCAATTTCTTCTTAAAATTCATTTGAATT
*
82088469 TCATTTTTTTTCTCAAGTTATTTGAATTTCATTTCAATTTGAATTTCATTTCACTTTTTTTTTAT
66 TCATTTTTTTTCTCATGTTATTTGAATTTCATTTCAATTTGAATTTCATTTCAC-TTTTTTTTAT
82088534 TTTTTAATTAAAACTTCATTTGTTATGTCAAATTTTTTTCATTTTAATTTTTTTCTTAAAATTCA
130 TTTTTAATTAAAACTTCATTTGTTATGTCAAATTTTTTTCATTTTAATTTTTTTCTTAAAATTCA
*
82088599 TTTGAATTTCATTTTTTCTCAGGTTATTTAAATTTCATTTCAATTTTAATTTCATTTCACTTTTT
195 TTTGAATTTCATTTTTTCTCATGTTATTTAAATTTCATTT-AATTTTAATTTCATTTCACTTTTT
82088664 TTCTTTTTTAAT
259 TTCTTTTTTAAT
*
82088676 TAAAACTTCATTTGTCATGTCAA-TTTTTTTTCATTTCAATTTCTTCTTAAAATTCGTTTGAATT
1 TAAAACTTCATTTGTCATGTCAATTTTTTTTTCATTTCAATTTCTTCTTAAAATTCATTTGAATT
* *
82088740 TCATTTTTTTTCTCATGTTATTTGAATTTCATTTTAATTTGAATTTCATTTCACTTTTTTTTCTT
66 TCATTTTTTTTCTCATGTTATTTGAATTTCATTTCAATTTGAATTTCATTTCACTTTTTTTTATT
* * * * *
82088805 TTTTAATTAAAAAATT-ATTTCTTATGTC-AATTTTTTTCCTTTCAA-TTTCTTCTTAAAATTCA
131 TTTTAATT-AAAACTTCATTTGTTATGTCAAATTTTTTTCATTTTAATTTTTTTCTTAAAATTCA
*** *
82088867 TTTGAATTT--TTTTTTCTCATGTTATTTTTTTTCTCATGTT-ATTTGAATTTCATTTCACTTTT
195 TTTGAATTTCATTTTTTCTCATGTTATTTAAATT-TCAT-TTAATTTTAATTTCATTTCAC--TT
82088929 TTTTTCTTTTTTAAT
256 TTTTTCTTTTTTAAT
* * * * * * *
82088944 TAAAATTTTATTTCTCATGTCAATTTTTTTTTCATTGCAATTTCTTTTTAAATTTAATTTGAATT
1 TAAAACTTCATTTGTCATGTCAATTTTTTTTTCATTTCAATTTCTTCTTAAAATTCATTTGAATT
** * *
82089009 TCATGATTTTTCTCATGTTATTTGAATTTCATTTAAATTTTAATTTCATTTCAC--TTTTTTATT
66 TCATTTTTTTTCTCATGTTATTTGAATTTCATTTCAATTTGAATTTCATTTCACTTTTTTTTATT
*
82089072 TTTTAATTAAACCTTCATTTG
131 TTTTAATTAAAACTTCATTTG
82089093 AATTTCATTT
Statistics
Matches: 638, Mismatches: 42, Indels: 25
0.90 0.06 0.04
Matches are distributed among these distances:
266 41 0.06
267 24 0.04
268 64 0.10
269 101 0.16
270 29 0.05
271 98 0.15
272 33 0.05
273 177 0.28
274 71 0.11
ACGTcount: A:0.24, C:0.12, G:0.04, T:0.60
Consensus pattern (270 bp):
TAAAACTTCATTTGTCATGTCAATTTTTTTTTCATTTCAATTTCTTCTTAAAATTCATTTGAATT
TCATTTTTTTTCTCATGTTATTTGAATTTCATTTCAATTTGAATTTCATTTCACTTTTTTTTATT
TTTTAATTAAAACTTCATTTGTTATGTCAAATTTTTTTCATTTTAATTTTTTTCTTAAAATTCAT
TTGAATTTCATTTTTTCTCATGTTATTTAAATTTCATTTAATTTTAATTTCATTTCACTTTTTTT
CTTTTTTAAT
Found at i:82088649 original size:17 final size:17
Alignment explanation
Indices: 82088624--82088662 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
82088614 TTCTCAGGTT
*
82088624 ATTTAAATTTCATTTCA
1 ATTTTAATTTCATTTCA
82088641 ATTTTAATTTCATTTCA
1 ATTTTAATTTCATTTCA
*
82088658 CTTTT
1 ATTTT
82088663 TTTCTTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.28, C:0.13, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTTTAATTTCATTTCA
Found at i:82088896 original size:17 final size:17
Alignment explanation
Indices: 82088874--82088910 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
82088864 TCATTTGAAT
82088874 TTTTTTTTCTCATGTTA
1 TTTTTTTTCTCATGTTA
82088891 TTTTTTTTCTCATGTTA
1 TTTTTTTTCTCATGTTA
82088908 TTT
1 TTT
82088911 GAATTTCATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.11, C:0.11, G:0.05, T:0.73
Consensus pattern (17 bp):
TTTTTTTTCTCATGTTA
Found at i:82089643 original size:6 final size:6
Alignment explanation
Indices: 82089634--82089725 Score: 109
Period size: 6 Copynumber: 15.7 Consensus size: 6
82089624 ATATAAATTC
* *
82089634 ATTTCA ATTTC- ATTTCA ATTTCA ATTTCA ATTTTA ATTCCA ATTTCA
1 ATTTCA ATTTCA ATTTCA ATTTCA ATTTCA ATTTCA ATTTCA ATTTCA
* * *
82089681 ATTTCA AATTGA ATTTCA A-TTCA A-TACA AGTTTCA ATTTCA ATTT
1 ATTTCA ATTTCA ATTTCA ATTTCA ATTTCA A-TTTCA ATTTCA ATTT
82089726 TTTTATATAT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
5 14 0.19
6 55 0.75
7 4 0.05
ACGTcount: A:0.35, C:0.15, G:0.02, T:0.48
Consensus pattern (6 bp):
ATTTCA
Found at i:82090538 original size:3 final size:3
Alignment explanation
Indices: 82090530--82090568 Score: 60
Period size: 3 Copynumber: 12.7 Consensus size: 3
82090520 TCCCTATATT
*
82090530 ATA ATA ATA ATA ATA ATA ATA ATA ATA AAA GATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA AT
82090569 GTACTGTGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
3 31 0.94
4 2 0.06
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:82092125 original size:30 final size:28
Alignment explanation
Indices: 82092085--82092162 Score: 81
Period size: 30 Copynumber: 2.8 Consensus size: 28
82092075 TATTATTCGC
82092085 TATT-ATATTGTTACTATTTTGTTTTAT
1 TATTAATATTGTTACTATTTTGTTTTAT
*
82092112 TGTTTGAATATTG-TA-TAACTTTTGTTTTAT
1 T-ATT-AATATTGTTACT-A-TTTTGTTTTAT
*
82092142 TATTAATTTTGTTACTATTTT
1 TATTAATATTGTTACTATTTT
82092163 AGAGGTATTT
Statistics
Matches: 41, Mismatches: 3, Indels: 13
0.72 0.05 0.23
Matches are distributed among these distances:
27 1 0.02
28 13 0.32
29 8 0.20
30 19 0.46
ACGTcount: A:0.23, C:0.04, G:0.09, T:0.64
Consensus pattern (28 bp):
TATTAATATTGTTACTATTTTGTTTTAT
Found at i:82098492 original size:35 final size:35
Alignment explanation
Indices: 82098446--82098562 Score: 135
Period size: 35 Copynumber: 3.3 Consensus size: 35
82098436 ACTCTCTGTT
* *
82098446 TTGGTGTGTTTTGGTTGGACTAGCTTTTATGAGCA
1 TTGGTGTGTTTTGGATGGACTAGCTCTTATGAGCA
* * *
82098481 TTGGTGTGTTTTGGAGGGATTAGCTCTTATGAACA
1 TTGGTGTGTTTTGGATGGACTAGCTCTTATGAGCA
*** * *
82098516 TTGGTGTGTTTCAAATGGACTGGCTCTTACGAGCA
1 TTGGTGTGTTTTGGATGGACTAGCTCTTATGAGCA
82098551 TCTGGTGTGTTT
1 T-TGGTGTGTTT
82098563 GGGCGATTTT
Statistics
Matches: 68, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
35 58 0.85
36 10 0.15
ACGTcount: A:0.16, C:0.11, G:0.31, T:0.42
Consensus pattern (35 bp):
TTGGTGTGTTTTGGATGGACTAGCTCTTATGAGCA
Found at i:82100423 original size:250 final size:250
Alignment explanation
Indices: 82099976--82100463 Score: 669
Period size: 250 Copynumber: 2.0 Consensus size: 250
82099966 TCTGATTTCC
*
82099976 AACCCCGTCACCCTTGTTGCACCAATAAGAACCATTCCTACCAGCTACTCTGACTTCACTAGTTA
1 AACCCCGTCACCCTTGTTGCACCAATAAGAACCATTCCTACCAGCTACTCTGACTCCACTAGTTA
* * *
82100041 TCGTAATGCCTCAACTGCAAACTATTGTGTCCCCTCATGGACCTTTAGACCAGATAACTCATTGT
66 TCGCAATGCCTCAACTGCAAACTATTGTGTCCCCTCATGGACCCTTAAACCAGATAACTCATTGT
* * *
82100106 TTATAAGAGGACATAACTTGTCTCACAACCATGCTTACTCTACCAACCATGACTCTCACTCCCTT
131 TTATAAGAGGACATAACTTGTCTCACAACCATGCCTACTCCACCAACCATGACTCACACTCCCTT
* *
82100171 AAACCAGGGTTTTAACCAACAGACGTTAGGTCTTCAACCTCACCCTTGTTGCACT
196 AAACCAGGGTTTTAACCAACAAACGTAAGGTCTTCAACCTCACCCTTGTTGCACT
* * * * *
82100226 AACCCTGTCACCCTTGTTGCACCAATAGGAACCATTCC-CCTCAGTTGCTCTGACTCCACTAGTT
1 AACCCCGTCACCCTTGTTGCACCAATAAGAACCATTCCTAC-CAGCTACTCTGACTCCACTAGTT
* * * *
82100290 GTCGCAGTGCCTCAATTGC-AACTTTGTGTGTCCCCT-ATTGGACCCTTAAACCAGATAACTCAT
65 ATCGCAATGCCTCAACTGCAAACTAT-TGTGTCCCCTCA-TGGACCCTTAAACCAGATAACTCAT
* * * * * *
82100353 TTTTTGTATA-AGGACATAACTTGTCTCACAACCATGCCTGCTCCACCAATCGTTACTCACACTC
128 TGTTTATA-AGAGGACATAACTTGTCTCACAACCATGCCTACTCCACCAACCATGACTCACACTC
* * *
82100417 CCTTAAACTAGGGTTTTCACCAGCAAACGTAAGGTCTTCAACCTCAC
192 CCTTAAACCAGGGTTTTAACCAACAAACGTAAGGTCTTCAACCTCAC
82100464 GGCTTAAAAG
Statistics
Matches: 207, Mismatches: 27, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
249 7 0.03
250 199 0.96
251 1 0.00
ACGTcount: A:0.26, C:0.31, G:0.14, T:0.29
Consensus pattern (250 bp):
AACCCCGTCACCCTTGTTGCACCAATAAGAACCATTCCTACCAGCTACTCTGACTCCACTAGTTA
TCGCAATGCCTCAACTGCAAACTATTGTGTCCCCTCATGGACCCTTAAACCAGATAACTCATTGT
TTATAAGAGGACATAACTTGTCTCACAACCATGCCTACTCCACCAACCATGACTCACACTCCCTT
AAACCAGGGTTTTAACCAACAAACGTAAGGTCTTCAACCTCACCCTTGTTGCACT
Found at i:82104182 original size:50 final size:50
Alignment explanation
Indices: 82104117--82104291 Score: 152
Period size: 50 Copynumber: 3.4 Consensus size: 50
82104107 CCTGTACTGT
* * * * **
82104117 CAATGTCATATCCCAGATACGGAATTACATGGGAGTTCTCATATCGATGC
1 CAATGCCATGTCCCAGACACAGAATTACATGGGACCTCTCATATCGATGC
* ** *
82104167 CAATGCCATGTCCCAGACATAGTTTTACATGGGACCTCTCATCTCGATGC
1 CAATGCCATGTCCCAGACACAGAATTACATGGGACCTCTCATATCGATGC
* ** ** *
82104217 CAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAACCTCAATAATGC
1 CAATGCCATGTCCCAGACACAGAATTACATGGGACCTCTCAT-A--TC---GATGC
82104273 CAATGCCATGTCCCAGACA
1 CAATGCCATGTCCCAGACA
82104292 TGGTCTTACA
Statistics
Matches: 103, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
50 79 0.77
53 2 0.02
56 22 0.21
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (50 bp):
CAATGCCATGTCCCAGACACAGAATTACATGGGACCTCTCATATCGATGC
Found at i:82114408 original size:49 final size:49
Alignment explanation
Indices: 82114283--82114789 Score: 860
Period size: 49 Copynumber: 10.6 Consensus size: 49
82114273 CCCTTCGGGA
* * * * *
82114283 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGG-
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82114329 CTCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CT-TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82114377 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82114426 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82114475 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82114524 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82114571 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82114620 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82114669 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82114716 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82114763 CTTATCAC--ATATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
82114790 TATTCAAATA
Statistics
Matches: 446, Mismatches: 7, Indels: 15
0.95 0.01 0.03
Matches are distributed among these distances:
46 3 0.01
47 200 0.45
48 2 0.00
49 241 0.54
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:82114548 original size:145 final size:143
Alignment explanation
Indices: 82114283--82114789 Score: 862
Period size: 145 Copynumber: 3.5 Consensus size: 143
82114273 CCCTTCGGGA
* * * * * *
82114283 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGG-CTCTGTCACATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT-TATCACATATATA
82114345 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
65 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATC
82114410 ACATCGGCCATTAGGC
128 ACATCGGCCATTAGGC
82114426 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
82114491 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
82114556 CATCGGCCATTAGGC
129 CATCGGCCATTAGGC
82114571 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
82114636 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
82114701 CATCGGCCATTAGGC
129 CATCGGCCATTAGGC
82114716 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
82114779 ACTTTCACATT
66 ACTTTCACATT
82114790 TATTCAAATA
Statistics
Matches: 353, Mismatches: 6, Indels: 12
0.95 0.02 0.03
Matches are distributed among these distances:
141 19 0.05
143 57 0.16
144 1 0.00
145 227 0.64
146 2 0.01
147 47 0.13
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:82118416 original size:39 final size:39
Alignment explanation
Indices: 82118353--82118427 Score: 114
Period size: 39 Copynumber: 1.9 Consensus size: 39
82118343 CCGAATATAA
*
82118353 TAAATATATATTTTTTAATTTTTTAATTTTAAAATACTT
1 TAAAAATATATTTTTTAATTTTTTAATTTTAAAATACTT
* * *
82118392 TAAAAATATTTTTTTTATTTTTTTATTTTTAAAATA
1 TAAAAATATATTTTTTAATTTTTTAATTTTAAAATA
82118428 TTTTTTGTGT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 32 1.00
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.61
Consensus pattern (39 bp):
TAAAAATATATTTTTTAATTTTTTAATTTTAAAATACTT
Found at i:82122292 original size:22 final size:22
Alignment explanation
Indices: 82122250--82122293 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
82122240 ATAAAATACT
*
82122250 GAAATATGTCTAGTACTTAAAA
1 GAAATATGTCTAGTACATAAAA
*
82122272 GAAATTATGTCTAG-GCATAAAA
1 GAAA-TATGTCTAGTACATAAAA
82122294 ATATTATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.45, C:0.09, G:0.16, T:0.30
Consensus pattern (22 bp):
GAAATATGTCTAGTACATAAAA
Found at i:82129404 original size:20 final size:21
Alignment explanation
Indices: 82129363--82129405 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
82129353 ATTTCACATG
**
82129363 TTTTTATTTTTATTACTCTAT
1 TTTTTATTTTTATTACAATAT
82129384 TTTTTATTTTTATTA-AATAT
1 TTTTTATTTTTATTACAATAT
82129404 TT
1 TT
82129406 AATAAGTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (21 bp):
TTTTTATTTTTATTACAATAT
Found at i:82134255 original size:7 final size:7
Alignment explanation
Indices: 82134243--82134267 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
82134233 TTATCTGATC
82134243 AGTGGCA
1 AGTGGCA
82134250 AGTGGCA
1 AGTGGCA
82134257 AGTGGCA
1 AGTGGCA
82134264 AGTG
1 AGTG
82134268 ATAAGTGGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.12, G:0.44, T:0.16
Consensus pattern (7 bp):
AGTGGCA
Found at i:82134317 original size:57 final size:58
Alignment explanation
Indices: 82134205--82134317 Score: 185
Period size: 57 Copynumber: 2.0 Consensus size: 58
82134195 GATCAATGAT
*
82134205 AAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGGCAAGTGGCAAGTGGC
1 AAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGGCAAGTGACAAGTGGC
*
82134263 AAGTGATAAGTGGTAGC-TTAGCTACACTTATCTGATCAG-GGACAAGTGATAAGTG
1 AAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGG-CAAGTGACAAGTG
82134318 ATCATACGTA
Statistics
Matches: 52, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
56 2 0.04
57 33 0.63
58 17 0.33
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.27
Consensus pattern (58 bp):
AAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGGCAAGTGACAAGTGGC
Done.