Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 269 of 313
Found at i:82159842 original size:11 final size:11
Alignment explanation
Indices: 82159827--82159922 Score: 68
Period size: 11 Copynumber: 9.4 Consensus size: 11
82159817 AAAAAATTAA
82159827 AAAAAGTATTTT
1 AAAAA-TATTTT
82159839 AAAAATATTTT
1 AAAAATATTTT
82159850 -AAAATA----
1 AAAAATATTTT
*
82159856 AAAAA-A-TTA
1 AAAAATATTTT
82159865 AAAAAGTATTTT
1 AAAAA-TATTTT
82159877 AAAAATATTTT
1 AAAAATATTTT
**
82159888 --AAA-ATTAA
1 AAAAATATTTT
82159896 AAAAAGTATTTT
1 AAAAA-TATTTT
82159908 AAAAATATTTT
1 AAAAATATTTT
82159919 AAAA
1 AAAA
82159923 TTAAAAAAAG
Statistics
Matches: 68, Mismatches: 5, Indels: 23
0.71 0.05 0.24
Matches are distributed among these distances:
6 1 0.01
7 4 0.06
8 3 0.04
9 8 0.12
10 9 0.13
11 23 0.34
12 20 0.29
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.36
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:82159860 original size:31 final size:31
Alignment explanation
Indices: 82159819--82159942 Score: 101
Period size: 31 Copynumber: 3.8 Consensus size: 31
82159809 TAAAAATTAA
*
82159819 AAAATTAAAAAAAGTATTTTAAAAATATTTT
1 AAAATAAAAAAAAGTATTTTAAAAATATTTT
*
82159850 AAAATAAAAAAATTAAAAAAGTA-TTTTAAAA-ATATTT
1 AAAAT-----AA--AAAAAAGTATTTTAAAAATAT-TTT
*
82159887 TAAA-ATTAAAAAAAGTATTTTAAAAATATTTT
1 AAAATA--AAAAAAAGTATTTTAAAAATATTTT
*
82159919 AAAATTAAAAAAAGTATTTTAAAA
1 AAAATAAAAAAAAGTATTTTAAAA
82159943 TTAAAAAAAA
Statistics
Matches: 74, Mismatches: 6, Indels: 26
0.70 0.06 0.25
Matches are distributed among these distances:
31 33 0.45
32 13 0.18
33 3 0.04
36 3 0.04
37 13 0.18
38 9 0.12
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.35
Consensus pattern (31 bp):
AAAATAAAAAAAAGTATTTTAAAAATATTTT
Found at i:82159868 original size:38 final size:39
Alignment explanation
Indices: 82159804--82159900 Score: 160
Period size: 38 Copynumber: 2.5 Consensus size: 39
82159794 ACCAAAAATT
*
82159804 TATTTTAAAAATTAAAAAATTAAAAAAAGTATTTTAAAAA
1 TATTTT-AAAATAAAAAAATTAAAAAAAGTATTTTAAAAA
82159844 TATTTTAAAATAAAAAAATT-AAAAAAGTATTTTAAAAA
1 TATTTTAAAATAAAAAAATTAAAAAAAGTATTTTAAAAA
82159882 TATTTTAAAATTAAAAAAA
1 TATTTTAAAA-TAAAAAAA
82159901 GTATTTTAAA
Statistics
Matches: 55, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
38 28 0.51
39 21 0.38
40 6 0.11
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (39 bp):
TATTTTAAAATAAAAAAATTAAAAAAAGTATTTTAAAAA
Found at i:82159900 original size:20 final size:20
Alignment explanation
Indices: 82159877--82159953 Score: 64
Period size: 20 Copynumber: 4.3 Consensus size: 20
82159867 AAAGTATTTT
82159877 AAAAATATTTTAAAATTAAA
1 AAAAATATTTTAAAATTAAA
*
82159897 AAAAGTA--TT----TT-AA
1 AAAAATATTTTAAAATTAAA
*
82159910 AAATAT-TT-TAAAATTAAA
1 AAAAATATTTTAAAATTAAA
*
82159928 AAAAGTATTTTAAAATTAAA
1 AAAAATATTTTAAAATTAAA
82159948 AAAAAT
1 AAAAAT
82159954 TTAAAAATAA
Statistics
Matches: 42, Mismatches: 6, Indels: 18
0.64 0.09 0.27
Matches are distributed among these distances:
13 7 0.17
14 2 0.05
17 2 0.05
18 8 0.19
19 2 0.05
20 21 0.50
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (20 bp):
AAAAATATTTTAAAATTAAA
Found at i:82159943 original size:30 final size:31
Alignment explanation
Indices: 82159858--82159942 Score: 163
Period size: 31 Copynumber: 2.8 Consensus size: 31
82159848 TTAAAATAAA
82159858 AAAATT-AAAAAAGTATTTTAAAAATATTTT
1 AAAATTAAAAAAAGTATTTTAAAAATATTTT
82159888 AAAATTAAAAAAAGTATTTTAAAAATATTTT
1 AAAATTAAAAAAAGTATTTTAAAAATATTTT
82159919 AAAATTAAAAAAAGTATTTTAAAA
1 AAAATTAAAAAAAGTATTTTAAAA
82159943 TTAAAAAAAA
Statistics
Matches: 54, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
30 6 0.11
31 48 0.89
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (31 bp):
AAAATTAAAAAAAGTATTTTAAAAATATTTT
Found at i:82159950 original size:69 final size:68
Alignment explanation
Indices: 82159810--82159961 Score: 191
Period size: 69 Copynumber: 2.2 Consensus size: 68
82159800 AATTTATTTT
*
82159810 AAAAATTAAAAAATTAAAAAAAGTATTTTAAAAATATTTTAAAATAAAAAAATTAAAAAAGTATT
1 AAAAATTTAAAAATTAAAAAAAGTATTTTAAAAATATTTTAAAATAAAAAAATTAAAAAAG-ATT
*
82159875 TTAA
65 TAAA
* * ***
82159879 AAATATTTTAAAATTAAAAAAAGTATTTTAAAAATATTTTAAAATTAAAAAAAGTATTTTAAA-A
1 AAAAATTTAAAAATTAAAAAAAGTATTTTAAAAATATTTTAAAA-TAAAAAAA-T-TAAAAAAGA
82159943 -TTAAA
63 TTTAAA
82159948 AAAAATTTAAAAAT
1 AAAAATTTAAAAAT
82159962 AAATATATTT
Statistics
Matches: 71, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
69 57 0.80
70 9 0.13
71 1 0.01
72 4 0.06
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (68 bp):
AAAAATTTAAAAATTAAAAAAAGTATTTTAAAAATATTTTAAAATAAAAAAATTAAAAAAGATTT
AAA
Found at i:82159955 original size:18 final size:18
Alignment explanation
Indices: 82159908--82159961 Score: 72
Period size: 20 Copynumber: 2.9 Consensus size: 18
82159898 AAAGTATTTT
*
82159908 AAAAATATTTTAAAATTA
1 AAAAAAATTTTAAAATTA
82159926 AAAAAAGTATTTTAAAATTA
1 AAAAAA--ATTTTAAAATTA
*
82159946 AAAAAAATTTAAAAAT
1 AAAAAAATTTTAAAAT
82159962 AAATATATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 14 0.44
20 18 0.56
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (18 bp):
AAAAAAATTTTAAAATTA
Found at i:82159958 original size:31 final size:30
Alignment explanation
Indices: 82159839--82159960 Score: 126
Period size: 31 Copynumber: 4.1 Consensus size: 30
82159829 AAAGTATTTT
82159839 AAAAA-TATTTT-AAAAT-AAAAAAATT-A
1 AAAAAGTATTTTAAAAATAAAAAAAATTAA
***
82159865 AAAAAGTATTTTAAAAATATTTTAAAATTAA
1 AAAAAGTATTTTAAAAATA-AAAAAAATTAA
***
82159896 AAAAAGTATTTTAAAAATATTTTAAAATTAA
1 AAAAAGTATTTTAAAAATA-AAAAAAATTAA
* *
82159927 AAAAAGTATTTTAAAATTAAAAAAAATTTA
1 AAAAAGTATTTTAAAAATAAAAAAAATTAA
82159957 AAAA
1 AAAA
82159961 TAAATATATT
Statistics
Matches: 83, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.06
27 6 0.07
28 5 0.06
30 17 0.20
31 50 0.60
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.34
Consensus pattern (30 bp):
AAAAAGTATTTTAAAAATAAAAAAAATTAA
Found at i:82165700 original size:8 final size:9
Alignment explanation
Indices: 82165678--82165708 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
82165668 TGTATCTTTT
82165678 ATTTTTATA
1 ATTTTTATA
82165687 ATTTTTATA
1 ATTTTTATA
82165696 ATTTTTATA
1 ATTTTTATA
82165705 ATTT
1 ATTT
82165709 ATTTATTTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (9 bp):
ATTTTTATA
Found at i:82170505 original size:108 final size:106
Alignment explanation
Indices: 82170308--82170506 Score: 242
Period size: 108 Copynumber: 1.9 Consensus size: 106
82170298 TTCTCATCGT
* * * *
82170308 ATCTTAGCAAATTTGCTATCTTGATTATTTATTTATTTCGAGCTTTGTTCTCAATAAAATTCCAT
1 ATCTTAGCAAATTTGCTATCCTGATTATTTATTTAGTTCGAGCTCTGCTCTCAATAAAATTCCAT
*
82170373 CTTGTCCATTGTGATAATCCTTTTCATCTTTTTCATTTTGA
66 CTTGTCCATTGTGATAATACTTTTCATCTTTTTCATTTTGA
* * *
82170414 ATCTTAGCAAAATTTGCTATCCTGATTAATTTCTTT-GTTCAGAGCTCTGCTCTCAATAAGATTT
1 ATCTTAGC-AAATTTGCTATCCTGATT-ATTTATTTAGTTC-GAGCTCTGCTCTCAATAAAATTC
* *
82170478 C-TCCTT-TCCCGTTGTGATAATATTTTTCA
63 CAT-CTTGT-CCATTGTGATAATACTTTTCA
82170507 AGCATTTTCC
Statistics
Matches: 78, Mismatches: 10, Indels: 8
0.81 0.10 0.08
Matches are distributed among these distances:
106 8 0.10
107 22 0.28
108 48 0.62
ACGTcount: A:0.24, C:0.19, G:0.11, T:0.47
Consensus pattern (106 bp):
ATCTTAGCAAATTTGCTATCCTGATTATTTATTTAGTTCGAGCTCTGCTCTCAATAAAATTCCAT
CTTGTCCATTGTGATAATACTTTTCATCTTTTTCATTTTGA
Found at i:82171447 original size:46 final size:46
Alignment explanation
Indices: 82171396--82171785 Score: 618
Period size: 46 Copynumber: 8.5 Consensus size: 46
82171386 GATTAGAAGC
82171396 AGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGAT
*
82171442 AGCAGATCTTGTCTTCCTGTATTTGACAGCGGAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGAT
* * *
82171488 AGCAGATTTTGTCTTACTGTATTTGGCAACGGAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGAT
* * * *
82171534 AGTAGATCTTGTCTTCTTGTATTTGGCAGCGGAGTAGATTGAATAT
1 AGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGAT
* * *
82171580 AGTAGATCTTGTCTTCCTGTATTTAGCAGCGGAGTAGATCGTAGAT
1 AGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGAT
*
82171626 AGCAGATATTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGAT
* * *
82171672 AGCAGATCTTGTCTTCCCGTATTTGACAGCGGAGTAGATCGTAGAT
1 AGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGAT
*
82171718 AGCATATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGAT
* *
82171764 AGTAGATATTGTCTTCCTGTAT
1 AGCAGATCTTGTCTTCCTGTAT
82171786 CTAGCAGTGA
Statistics
Matches: 312, Mismatches: 32, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 312 1.00
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (46 bp):
AGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGAT
Found at i:82171955 original size:132 final size:132
Alignment explanation
Indices: 82171794--82172068 Score: 363
Period size: 132 Copynumber: 2.1 Consensus size: 132
82171784 ATCTAGCAGT
* * *
82171794 GAAGCAGATTGAAGCCACCAGTCCTATCTCCCTGAGCAGTAGCAGAGTAGTCTGAAGATTGGAGA
1 GAAGCAGATTGAAGCCACCAGTCCTATCTCCCTGAGCAGAAGCAGAGTAGGCTGAAGATTGCAGA
* * ** ** * * *
82171859 TCTTGTCTCCCTAAACAGTAGTGGAACAGGTGGAAGACGGCGAATCTTATCTTCCTAAGGTAGTA
66 TCCTGTCTCCCTAAACAGTAGTGGAACAGATCAAAGACAACGAATCTTATCTTCCCAAGGAAATA
82171924 GG
131 GG
* * *
82171926 GAAGCAGATTTAAGCCACTAG-CCTTATCTCCCTGAGCAGAAGCGGAGTAGGCTGAAGATTGCAG
1 GAAGCAGATTGAAGCCACCAGTCC-TATCTCCCTGAGCAGAAGCAGAGTAGGCTGAAGATTGCAG
* * *
82171990 ATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACAATGAATCTTATCTTCCCAAGGAAAT
65 ATCCTGTCTCCCTAAACAGTAGTGGAACAGATCAAAGACAACGAATCTTATCTTCCCAAGGAAAT
82172055 AGG
130 AGG
*
82172058 GAACCAGATTG
1 GAAGCAGATTG
82172069 GATCAAACCT
Statistics
Matches: 122, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
131 2 0.02
132 120 0.98
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.23
Consensus pattern (132 bp):
GAAGCAGATTGAAGCCACCAGTCCTATCTCCCTGAGCAGAAGCAGAGTAGGCTGAAGATTGCAGA
TCCTGTCTCCCTAAACAGTAGTGGAACAGATCAAAGACAACGAATCTTATCTTCCCAAGGAAATA
GG
Found at i:82177454 original size:26 final size:26
Alignment explanation
Indices: 82177424--82177476 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
82177414 GCTCACCGAA
82177424 TAGCCCTAGCCCAATTTCAACACCCC
1 TAGCCCTAGCCCAATTTCAACACCCC
82177450 TAGCCCTAGCCCAATTTCAACACCCC
1 TAGCCCTAGCCCAATTTCAACACCCC
82177476 T
1 T
82177477 GTCCATTTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.45, G:0.08, T:0.21
Consensus pattern (26 bp):
TAGCCCTAGCCCAATTTCAACACCCC
Found at i:82178390 original size:9 final size:9
Alignment explanation
Indices: 82178364--82178424 Score: 88
Period size: 9 Copynumber: 6.6 Consensus size: 9
82178354 TATAAGAAAT
82178364 TAATTCGGG
1 TAATTCGGG
82178373 TAATTTTCGGG
1 TAA--TTCGGG
82178384 TAATTCGGG
1 TAATTCGGG
82178393 TAATTCGGG
1 TAATTCGGG
82178402 TAATTCGGG
1 TAATTCGGG
82178411 TAAATT-GGG
1 T-AATTCGGG
82178420 TAATT
1 TAATT
82178425 TTTAACCAAA
Statistics
Matches: 49, Mismatches: 0, Indels: 7
0.88 0.00 0.12
Matches are distributed among these distances:
8 4 0.08
9 32 0.65
10 4 0.08
11 9 0.18
ACGTcount: A:0.25, C:0.08, G:0.30, T:0.38
Consensus pattern (9 bp):
TAATTCGGG
Found at i:82186210 original size:69 final size:69
Alignment explanation
Indices: 82186090--82186298 Score: 285
Period size: 69 Copynumber: 3.0 Consensus size: 69
82186080 ATTATATCAT
* ** * * *
82186090 CCTACAATTACATACAAAAAGTTATATTA-CTCTACCATTACATCCAATTACACATACAAAAAGT
1 CCTACAATTACATATAAAAAGTTATATTAGC-CTACCACCACACCCATTTACACATAAAAAAAGT
82186154 GACAA
65 GACAA
* * *
82186159 CCTACAATTACATATAAAAAGTGATATTAGCCCACCACCACACCCATTTACACATAGAAAAAGTG
1 CCTACAATTACATATAAAAAGTTATATTAGCCTACCACCACACCCATTTACACATAAAAAAAGTG
*
82186224 TCAA
66 ACAA
** *
82186228 CCTACAATTACATATAAAAAGTTATATTAGTTTACCACCACACGCATTTACACATAAAAAAAGTG
1 CCTACAATTACATATAAAAAGTTATATTAGCCTACCACCACACCCATTTACACATAAAAAAAGTG
82186293 ACAA
66 ACAA
82186297 CC
1 CC
82186299 CTTTATGGCA
Statistics
Matches: 123, Mismatches: 16, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
69 122 0.99
70 1 0.01
ACGTcount: A:0.45, C:0.24, G:0.07, T:0.24
Consensus pattern (69 bp):
CCTACAATTACATATAAAAAGTTATATTAGCCTACCACCACACCCATTTACACATAAAAAAAGTG
ACAA
Found at i:82186316 original size:69 final size:68
Alignment explanation
Indices: 82186090--82186338 Score: 277
Period size: 69 Copynumber: 3.6 Consensus size: 68
82186080 ATTATATCAT
* ** * *
82186090 CCTACAATTACATACAAAAAGTTATATTACTCTACCATTACATCCAATTACACATACAAAAAGTG
1 CCTACAATTACATACAAAAAGTTATATTAGTCTACCACCACA-CCATTTACACATAAAAAAAGTG
82186155 ACAA
65 ACAA
* * * * *
82186159 CCTACAATTACATATAAAAAGTGATATTAGCCCACCACCACACCCATTTACACATAGAAAAAGTG
1 CCTACAATTACATACAAAAAGTTATATTAGTCTACCACCACA-CCATTTACACATAAAAAAAGTG
*
82186224 TCAA
65 ACAA
* *
82186228 CCTACAATTACATATAAAAAGTTATATTAGTTTACCACCACACGCATTTACACATAAAAAAAGTG
1 CCTACAATTACATACAAAAAGTTATATTAGTCTACCACCACAC-CATTTACACATAAAAAAAGTG
82186293 ACAA
65 ACAA
** ** *
82186297 CCCT-TTATGGCATACAAAAAGTTATATTCA-TCCACCACCACA
1 -CCTACAATTACATACAAAAAGTTATATT-AGTCTACCACCACA
82186339 GCCACATGGG
Statistics
Matches: 153, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
68 1 0.01
69 148 0.97
70 4 0.03
ACGTcount: A:0.44, C:0.24, G:0.07, T:0.25
Consensus pattern (68 bp):
CCTACAATTACATACAAAAAGTTATATTAGTCTACCACCACACCATTTACACATAAAAAAAGTGA
CAA
Found at i:82186338 original size:138 final size:138
Alignment explanation
Indices: 82186090--82186338 Score: 324
Period size: 138 Copynumber: 1.8 Consensus size: 138
82186080 ATTATATCAT
** *
82186090 CCTACAATTACATACAAAAAGTTATATTACTCTACCATTACATCCAATTACACATACAAAAAGTG
1 CCTACAATTACATACAAAAAGTTATATTACTCTACCACCACATCCAATTACACATAAAAAAAGTG
* *
82186155 ACAACCTACAATTACATATAAAAAGTGATATTAGCCCACCACCACACCCATTTACACATAGAAAA
66 ACAACCTACAATGACATACAAAAAGTGATATTAGCCCACCACCACACCCATTTACACATAGAAAA
82186220 AGTGTCAA
131 AGTGTCAA
* * * *
82186228 CCTACAATTACATATAAAAAGTTATATTAGTTTACCACCACA-CGCATTTACACATAAAAAAAGT
1 CCTACAATTACATACAAAAAGTTATATTACTCTACCACCACATC-CAATTACACATAAAAAAAGT
** * * *
82186292 GACAACCCT-TTATGGCATACAAAAAGTTATATTCA-TCCACCACCACA
65 GACAA-CCTACAATGACATACAAAAAGTGATATT-AGCCCACCACCACA
82186339 GCCACATGGG
Statistics
Matches: 94, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
137 1 0.01
138 89 0.95
139 4 0.04
ACGTcount: A:0.44, C:0.24, G:0.07, T:0.25
Consensus pattern (138 bp):
CCTACAATTACATACAAAAAGTTATATTACTCTACCACCACATCCAATTACACATAAAAAAAGTG
ACAACCTACAATGACATACAAAAAGTGATATTAGCCCACCACCACACCCATTTACACATAGAAAA
AGTGTCAA
Found at i:82193253 original size:17 final size:18
Alignment explanation
Indices: 82193221--82193254 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
82193211 AATTTCTTTT
82193221 CAATTTATACCCTAATTC
1 CAATTTATACCCTAATTC
*
82193239 CAATTTA-ATCCTAATT
1 CAATTTATACCCTAATT
82193255 AACTCATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.35, C:0.24, G:0.00, T:0.41
Consensus pattern (18 bp):
CAATTTATACCCTAATTC
Found at i:82193718 original size:17 final size:18
Alignment explanation
Indices: 82193686--82193719 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
82193676 AATAGCCTAT
*
82193686 TCTGTTTTGGTTTCCTTC
1 TCTGTTTTGATTTCCTTC
82193704 TCTGTTTT-ATTTCCTT
1 TCTGTTTTGATTTCCTT
82193720 TTGTTTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.03, C:0.21, G:0.12, T:0.65
Consensus pattern (18 bp):
TCTGTTTTGATTTCCTTC
Found at i:82193893 original size:30 final size:32
Alignment explanation
Indices: 82193859--82193928 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 32
82193849 TGTCATGTTT
82193859 TAATATAAATATCT-TTTACTT-AATAATAAA
1 TAATATAAATATCTATTTACTTAAATAATAAA
*
82193889 T-A-ATAAATATCTATTTACTTAAATAATAAG
1 TAATATAAATATCTATTTACTTAAATAATAAA
*
82193919 TAATTTAAAT
1 TAATATAAAT
82193929 CCATGAATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
28 10 0.29
29 8 0.24
30 10 0.29
31 1 0.03
32 5 0.15
ACGTcount: A:0.50, C:0.06, G:0.01, T:0.43
Consensus pattern (32 bp):
TAATATAAATATCTATTTACTTAAATAATAAA
Found at i:82198395 original size:18 final size:18
Alignment explanation
Indices: 82198372--82198417 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
82198362 CGAAACGATT
82198372 GCAGCAGCAACGATAGTA
1 GCAGCAGCAACGATAGTA
82198390 GCAGCAGCAACGATAGTA
1 GCAGCAGCAACGATAGTA
*
82198408 GCATCAGCAA
1 GCAGCAGCAA
82198418 GCACGTCCCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.39, C:0.24, G:0.26, T:0.11
Consensus pattern (18 bp):
GCAGCAGCAACGATAGTA
Found at i:82205128 original size:5 final size:5
Alignment explanation
Indices: 82205118--82205144 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
82205108 CTTTGACCCA
82205118 TTATT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTATT TTATT TTATT TT
82205145 TTAAATCTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:82205246 original size:16 final size:16
Alignment explanation
Indices: 82205205--82205255 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
82205195 TATAATTGGT
*
82205205 ATGTATTTTTTTTAAA
1 ATGTATTTATTTTAAA
* *
82205221 ATAGT-CTTATTTTATA
1 AT-GTATTTATTTTAAA
82205237 ATGTATTTATTTTTAAA
1 ATGTATTTA-TTTTAAA
82205254 AT
1 AT
82205256 TATAGTATTC
Statistics
Matches: 27, Mismatches: 5, Indels: 5
0.73 0.14 0.14
Matches are distributed among these distances:
15 2 0.07
16 15 0.56
17 10 0.37
ACGTcount: A:0.33, C:0.02, G:0.06, T:0.59
Consensus pattern (16 bp):
ATGTATTTATTTTAAA
Found at i:82205279 original size:3 final size:3
Alignment explanation
Indices: 82205271--82205306 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
82205261 TATTCTCCTA
82205271 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
82205307 ATAATCTATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:82206774 original size:26 final size:26
Alignment explanation
Indices: 82206745--82206806 Score: 115
Period size: 26 Copynumber: 2.4 Consensus size: 26
82206735 CATCATCTTC
82206745 TTCTTCAGAGGAACTGAAGAAGACGA
1 TTCTTCAGAGGAACTGAAGAAGACGA
82206771 TTCTTCAGAGGAACTGAAGAAGACGA
1 TTCTTCAGAGGAACTGAAGAAGACGA
*
82206797 TGCTTCAGAG
1 TTCTTCAGAG
82206807 AAAAAAATTG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.35, C:0.16, G:0.27, T:0.21
Consensus pattern (26 bp):
TTCTTCAGAGGAACTGAAGAAGACGA
Found at i:82207755 original size:10 final size:10
Alignment explanation
Indices: 82207740--82207835 Score: 67
Period size: 10 Copynumber: 9.7 Consensus size: 10
82207730 TTTGTTAAAT
82207740 TTAAAAATTA
1 TTAAAAATTA
82207750 TTAAAAA-TA
1 TTAAAAATTA
82207759 -TAAAAATTTA
1 TTAAAAA-TTA
82207769 TTTAAAAATTA
1 -TTAAAAATTA
*
82207780 TTAAGAATTA
1 TTAAAAATTA
*
82207790 -TAAGAAATAA
1 TTAA-AAATTA
* *
82207800 TAAAAAAGTA
1 TTAAAAATTA
82207810 TGT--AAATTA
1 T-TAAAAATTA
*
82207819 TTAATAATTA
1 TTAAAAATTA
*
82207829 ATAAAAA
1 TTAAAAA
82207836 AAAGATTTAA
Statistics
Matches: 66, Mismatches: 11, Indels: 18
0.69 0.12 0.19
Matches are distributed among these distances:
8 7 0.11
9 11 0.17
10 37 0.56
11 5 0.08
12 6 0.09
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.35
Consensus pattern (10 bp):
TTAAAAATTA
Found at i:82207757 original size:18 final size:20
Alignment explanation
Indices: 82207736--82207778 Score: 63
Period size: 18 Copynumber: 2.2 Consensus size: 20
82207726 TTTTTTTGTT
82207736 AAATTTAAAAA-TTA-TTAA
1 AAATTTAAAAATTTATTTAA
*
82207754 AAATATAAAAATTTATTTAA
1 AAATTTAAAAATTTATTTAA
82207774 AAATT
1 AAATT
82207779 ATTAAGAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 10 0.48
19 3 0.14
20 8 0.38
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
AAATTTAAAAATTTATTTAA
Found at i:82207773 original size:30 final size:32
Alignment explanation
Indices: 82207738--82207797 Score: 97
Period size: 30 Copynumber: 1.9 Consensus size: 32
82207728 TTTTTGTTAA
82207738 ATTTAAAAATTATTAA-AAATATAA-AAATTT
1 ATTTAAAAATTATTAAGAAATATAAGAAATTT
*
82207768 ATTTAAAAATTATTAAGAATTATAAGAAAT
1 ATTTAAAAATTATTAAGAAATATAAGAAAT
82207798 AATAAAAAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 16 0.59
31 7 0.26
32 4 0.15
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.38
Consensus pattern (32 bp):
ATTTAAAAATTATTAAGAAATATAAGAAATTT
Found at i:82207856 original size:31 final size:33
Alignment explanation
Indices: 82207795--82207857 Score: 78
Period size: 32 Copynumber: 2.0 Consensus size: 33
82207785 AATTATAAGA
*
82207795 AATAATAAAAAAGTATGTAAATTATTAATAATT
1 AATAATAAAAAAGTATGTAAATTATAAATAATT
*
82207828 AATAA-AAAAAAG-ATTTAAAATTA-AAATAAT
1 AATAATAAAAAAGTATGT-AAATTATAAATAAT
82207858 ATTTTAGGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
31 9 0.33
32 13 0.48
33 5 0.19
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (33 bp):
AATAATAAAAAAGTATGTAAATTATAAATAATT
Found at i:82215016 original size:31 final size:32
Alignment explanation
Indices: 82214981--82215060 Score: 108
Period size: 32 Copynumber: 2.5 Consensus size: 32
82214971 ATGTTCACAT
*
82214981 TTTCATTTTGGTCA-TTCCACTTCTAGGTCGA
1 TTTCATTTTAGTCATTTCCACTTCTAGGTCGA
* **
82215012 TTTCATTTTAGTGATTTTTACTTCTAGGTCGA
1 TTTCATTTTAGTCATTTCCACTTCTAGGTCGA
*
82215044 TTTCATTTTAGTGATTT
1 TTTCATTTTAGTCATTT
82215061 TTTAAGTATT
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
31 12 0.27
32 32 0.73
ACGTcount: A:0.17, C:0.15, G:0.15, T:0.53
Consensus pattern (32 bp):
TTTCATTTTAGTCATTTCCACTTCTAGGTCGA
Found at i:82215039 original size:32 final size:32
Alignment explanation
Indices: 82214999--82215062 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
82214989 TGGTCATTCC
82214999 ACTTCTAGGTCGATTTCATTTTAGTGATTTTT
1 ACTTCTAGGTCGATTTCATTTTAGTGATTTTT
82215031 ACTTCTAGGTCGATTTCATTTTAGTGATTTTT
1 ACTTCTAGGTCGATTTCATTTTAGTGATTTTT
82215063 TAAGTATTGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.19, C:0.12, G:0.16, T:0.53
Consensus pattern (32 bp):
ACTTCTAGGTCGATTTCATTTTAGTGATTTTT
Found at i:82224349 original size:16 final size:15
Alignment explanation
Indices: 82224310--82224351 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
82224300 AACTCGAACA
82224310 ATTTCACTCG-ATTT
1 ATTTCACTCGAATTT
*
82224324 AATTCGACTCGAATTT
1 ATTTC-ACTCGAATTT
82224340 CATTTCACTCGA
1 -ATTTCACTCGA
82224352 CTCGATTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 4 0.17
15 5 0.22
16 10 0.43
17 4 0.17
ACGTcount: A:0.26, C:0.24, G:0.10, T:0.40
Consensus pattern (15 bp):
ATTTCACTCGAATTT
Found at i:82228322 original size:30 final size:31
Alignment explanation
Indices: 82228288--82228349 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
82228278 TCTGGTTTCA
*
82228288 TGCATGTAACGTAGG-TTTTGCATGCATTCT
1 TGCATGCAACGTAGGTTTTTGCATGCATTCT
* *
82228318 TGCATGCAACGTGGGTTTTTGCATGGATTCT
1 TGCATGCAACGTAGGTTTTTGCATGCATTCT
82228349 T
1 T
82228350 AAACTTTGCT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 13 0.46
31 15 0.54
ACGTcount: A:0.18, C:0.16, G:0.26, T:0.40
Consensus pattern (31 bp):
TGCATGCAACGTAGGTTTTTGCATGCATTCT
Found at i:82232863 original size:30 final size:31
Alignment explanation
Indices: 82232829--82232890 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
82232819 TTTGGTTTCA
*
82232829 TGCATGTAACGTAGG-TTTTGCATGGATTCT
1 TGCATGCAACGTAGGTTTTTGCATGGATTCT
*
82232859 TGCATGCAACGTGGGTTTTTGCATGGATTCT
1 TGCATGCAACGTAGGTTTTTGCATGGATTCT
82232890 T
1 T
82232891 AAACTTTGCT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 13 0.45
31 16 0.55
ACGTcount: A:0.18, C:0.15, G:0.27, T:0.40
Consensus pattern (31 bp):
TGCATGCAACGTAGGTTTTTGCATGGATTCT
Found at i:82244167 original size:36 final size:36
Alignment explanation
Indices: 82244119--82244190 Score: 117
Period size: 36 Copynumber: 2.0 Consensus size: 36
82244109 GAGTGAGACA
82244119 TTGAATGGGATGGAAAAGGTGTAGTGGAGGTAGGTG
1 TTGAATGGGATGGAAAAGGTGTAGTGGAGGTAGGTG
* * *
82244155 TTGAATGTGATGGGATAGGTGTAGTGGAGGTAGGTG
1 TTGAATGGGATGGAAAAGGTGTAGTGGAGGTAGGTG
82244191 GCGTATTTGG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.25, C:0.00, G:0.47, T:0.28
Consensus pattern (36 bp):
TTGAATGGGATGGAAAAGGTGTAGTGGAGGTAGGTG
Found at i:82249592 original size:6 final size:6
Alignment explanation
Indices: 82249581--82249609 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
82249571 TAATAATTAC
82249581 ATATTT ATATTT ATATTT ATATTT ATATT
1 ATATTT ATATTT ATATTT ATATTT ATATT
82249610 AAATCACTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (6 bp):
ATATTT
Found at i:82249790 original size:40 final size:39
Alignment explanation
Indices: 82249711--82249799 Score: 126
Period size: 40 Copynumber: 2.3 Consensus size: 39
82249701 AAAATTTATA
* * *
82249711 TTTAATACAATAAAATATTTATTATATTTATTTGTGTTTT
1 TTTAATATAATAAAACATTTATTATATTTATTGGTG-TTT
82249751 TTTAATATAATAAAACATTTATTATATTTA-TGGTAGTTT
1 TTTAATATAATAAAACATTTATTATATTTATTGGT-GTTT
82249790 TTTAATATAA
1 TTTAATATAA
82249800 ATATTTTTAA
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
39 16 0.36
40 29 0.64
ACGTcount: A:0.38, C:0.02, G:0.06, T:0.54
Consensus pattern (39 bp):
TTTAATATAATAAAACATTTATTATATTTATTGGTGTTT
Found at i:82253868 original size:27 final size:27
Alignment explanation
Indices: 82253837--82253890 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
82253827 CACGTTGGTT
82253837 TGGATAGCTCTTCAC-ACACTGCACCCA
1 TGGATAGCTCTTC-CGACACTGCACCCA
*
82253864 TGGATAGCTTTTCCGACACTGCACCCA
1 TGGATAGCTCTTCCGACACTGCACCCA
82253891 GTTGGGTATG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 1 0.04
27 24 0.96
ACGTcount: A:0.24, C:0.35, G:0.17, T:0.24
Consensus pattern (27 bp):
TGGATAGCTCTTCCGACACTGCACCCA
Found at i:82256879 original size:19 final size:19
Alignment explanation
Indices: 82256851--82256914 Score: 92
Period size: 19 Copynumber: 3.3 Consensus size: 19
82256841 AATTTTAGAG
*
82256851 GATATACAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
82256870 GATATGCAATTTTAGATAT
1 GATATGCAATCTTAGATAT
82256889 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
82256910 GATAT
1 GATAT
82256915 ATACAATCTT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
19 22 0.55
21 18 0.45
ACGTcount: A:0.39, C:0.08, G:0.14, T:0.39
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:82256933 original size:19 final size:21
Alignment explanation
Indices: 82256852--82256927 Score: 111
Period size: 21 Copynumber: 3.7 Consensus size: 21
82256842 ATTTTAGAGG
82256852 ATATACAATCTTAGATATG--
1 ATATACAATCTTAGATATGAT
* *
82256871 ATATGCAATTTTAGATATGAT
1 ATATACAATCTTAGATATGAT
*
82256892 ATATGCAATCTTAGATATGAT
1 ATATACAATCTTAGATATGAT
82256913 ATATACAATCTTAGA
1 ATATACAATCTTAGA
82256928 ATATATGATT
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
19 17 0.33
21 34 0.67
ACGTcount: A:0.41, C:0.09, G:0.12, T:0.38
Consensus pattern (21 bp):
ATATACAATCTTAGATATGAT
Found at i:82257151 original size:19 final size:21
Alignment explanation
Indices: 82257127--82257165 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
82257117 GTTTTCTTTT
*
82257127 TTTTTTTCTT-TTT-CGATTA
1 TTTTTTACTTATTTACGATTA
82257146 TTTTTTACTTATTTACGATT
1 TTTTTTACTTATTTACGATT
82257166 TTAAAAAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.15, C:0.10, G:0.05, T:0.69
Consensus pattern (21 bp):
TTTTTTACTTATTTACGATTA
Found at i:82257395 original size:3 final size:3
Alignment explanation
Indices: 82257387--82257426 Score: 55
Period size: 3 Copynumber: 13.3 Consensus size: 3
82257377 ATTAATTTTG
*
82257387 TTA TTA TTA TTT TTA TTA TTA -TA TTA TATA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA T
82257427 ACCTACATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 28 0.85
4 3 0.09
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:82257395 original size:15 final size:15
Alignment explanation
Indices: 82257371--82257425 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
82257361 GTTTTTAGTC
82257371 TATT-TTATTAATTT
1 TATTATTATTAATTT
* *
82257385 TGTTATTATTATTTT
1 TATTATTATTAATTT
82257400 TATTATTA-T-ATTAT
1 TATTATTATTAATT-T
82257414 ATATTATTATTA
1 -TATTATTATTA
82257426 TACCTACATA
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
13 2 0.06
14 5 0.16
15 24 0.75
16 1 0.03
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (15 bp):
TATTATTATTAATTT
Found at i:82257402 original size:12 final size:12
Alignment explanation
Indices: 82257373--82257424 Score: 52
Period size: 12 Copynumber: 4.1 Consensus size: 12
82257363 TTTTAGTCTA
82257373 TTTTATTAATT-T
1 TTTTATT-ATTAT
*
82257385 TGTTATTATTAT
1 TTTTATTATTAT
82257397 TTTTATTATTAT
1 TTTTATTATTAT
82257409 ATTATATATTATTAT
1 -TT-T-TATTATTAT
82257424 T
1 T
82257425 ATACCTACAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
11 3 0.09
12 18 0.53
13 2 0.06
14 2 0.06
15 9 0.26
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (12 bp):
TTTTATTATTAT
Found at i:82257799 original size:51 final size:52
Alignment explanation
Indices: 82257685--82257800 Score: 132
Period size: 51 Copynumber: 2.3 Consensus size: 52
82257675 ATTTTCCACG
**
82257685 TTTT-TATAT-TATACTTATATATTTCATTTTTTTGTAAATGCATGAATATA
1 TTTTATATATATATACTTATATATTTCATTTTTTCATAAATGCATGAATATA
* * * * *
82257735 TTTTATATGTATATATTTATAT-TTTCCTTGTTTTCATAAATGCAT-TATGTA
1 TTTTATATATATATACTTATATATTTCATT-TTTTCATAAATGCATGAATATA
82257786 TTTTATATATATATA
1 TTTTATATATATATA
82257801 AGTTTTATAA
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
50 4 0.07
51 28 0.51
52 23 0.42
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.57
Consensus pattern (52 bp):
TTTTATATATATATACTTATATATTTCATTTTTTCATAAATGCATGAATATA
Found at i:82261811 original size:15 final size:15
Alignment explanation
Indices: 82261783--82261824 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
82261773 CAAATTTTTC
82261783 AAAAA-AAA-AAAAG
1 AAAAAGAAAGAAAAG
*
82261796 AGAAAGAAAGAAAAG
1 AAAAAGAAAGAAAAG
82261811 AAAAAGAAAGAAAA
1 AAAAAGAAAGAAAA
82261825 ATGAGAGGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 4 0.16
14 3 0.12
15 18 0.72
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAGAAAAG
Found at i:82261818 original size:19 final size:20
Alignment explanation
Indices: 82261786--82261823 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
82261776 ATTTTTCAAA
82261786 AAAAAAAAAGAGAAAGAAAG
1 AAAAAAAAAGAGAAAGAAAG
*
82261806 AAAAGAAAA-AGAAAGAAA
1 AAAAAAAAAGAGAAAGAAA
82261824 AATGAGAGGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (20 bp):
AAAAAAAAAGAGAAAGAAAG
Found at i:82263399 original size:131 final size:132
Alignment explanation
Indices: 82263082--82263661 Score: 872
Period size: 131 Copynumber: 4.5 Consensus size: 132
82263072 CGGTGAAACG
* *
82263082 CCAAGCCTTGTCTCCTTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAG-
1 CCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGC
* * * * *
82263146 AGTAGTGGAACAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGCGGGAAGTAGATTTAAGC
66 AGTAGTGGAGCAGATCAAAGACGGTAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC
82263211 CA
131 CA
*
82263213 CCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGT
1 CCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGC
*
82263278 AGTAGTGGAGCAGATCAAAGACGGTAAATCTTATCTTTCCAAGATAGTGGGAAGCAAATTTAAGC
66 AGTAGTGGAGCAGATCAAAGACGGTAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC
82263343 CA
131 CA
* * * *
82263345 CCAAGCCTTATCTCCTTCAGCAACAGCGGAGTA-GTTGAAGATTGTAGATCTTATCTCCCTAAGC
1 CCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGC
* * * *
82263409 AGTAGTGAAGCAGATCAAATACGGTAAATCTTATCTTTCGAAGATAATGGGAAGCAGATTTAAGC
66 AGTAGTGGAGCAGATCAAAGACGGTAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC
82263474 CA
131 CA
* * *
82263476 CAAAGCCTTGTCTCCCTAAGCAGCAGC-G-G-A-G-T-AAG-TTGTAGATCCTATCTCCCTAAGC
1 CCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGC
*
82263534 AGTAGTGGAGCAGATCAAAGACGGAAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC
66 AGTAGTGGAGCAGATCAAAGACGGTAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC
82263599 CA
131 CA
* * * *
82263601 CCAAGCCTTATCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATGGCAAATCTTATCTCCCT
1 CCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
82263662 GAAGTTGCAG
Statistics
Matches: 405, Mismatches: 36, Indels: 15
0.89 0.08 0.03
Matches are distributed among these distances:
125 108 0.27
126 4 0.01
127 2 0.00
128 3 0.01
129 2 0.00
130 2 0.00
131 179 0.44
132 105 0.26
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (132 bp):
CCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGC
AGTAGTGGAGCAGATCAAAGACGGTAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC
CA
Found at i:82263701 original size:44 final size:43
Alignment explanation
Indices: 82263648--82264023 Score: 232
Period size: 44 Copynumber: 8.7 Consensus size: 43
82263638 GAAGATGGCA
*
82263648 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAACCGAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACC-AT
* * * *
82263692 AATCCTATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAACCTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCAT
* * * *** *
82263735 GGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-TCGCATC-T
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCAT
* * * ** *
82263776 AGTCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTCAGCAGCA-
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTAAAACCAT
* * * *
82263819 AGTCTTATC-CTCCTGAAGTTGCAGT-GAGGTAGACTGAAGATAGCA-
1 AATCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGA-TTAA-A-ACCAT
* *
82263864 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAGAGCCGAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACC-AT
* * * * *
82263908 AATCCTATCTCCCTGAAATTGCAGTGGAGCGGATCAAAACCTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCAT
** * ** * *** *
82263951 GGGTCTTTTCTATCTGAAGTTGCAG-AGAGCAGA-TCGCATC-T
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCAT
*
82263992 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAG
82264024 GCTAAGTAAA
Statistics
Matches: 259, Mismatches: 58, Indels: 33
0.74 0.17 0.09
Matches are distributed among these distances:
40 42 0.16
41 15 0.06
42 9 0.03
43 49 0.19
44 111 0.43
45 30 0.12
46 3 0.01
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (43 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCAT
Found at i:82263879 original size:45 final size:43
Alignment explanation
Indices: 82263645--82264107 Score: 198
Period size: 44 Copynumber: 10.7 Consensus size: 43
82263635 GTTGAAGATG
* * *
82263645 GCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAA-AA
1 GCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCA
* * * * * *
82263687 CCGATAATCCTATCTCCTTGAAGTTGCAGTGGAGCGGATTAA-AA
1 GC-A-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCA
* ** * * *
82263731 CCTTGGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CGCA
1 GC--AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCA
* * * * *
82263773 TCTAGTCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTCAGCA
1 GCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCA
* * *
82263816 GCAAGTCTTATC-CTCCTGAAGTTGCAGT-GAGGTAGACTGAAGATA
1 GCAAATCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAG-CA
* *
82263861 GCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAGAGCC
1 GCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTA-AGCA
* * * * * *
82263905 G-ATAATCCTATCTCCCTGAAATTGCAGTGGAGCGGATCAAAACC
1 GCA-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-CTAAGCA
***** * ** * *
82263949 TTGGGTCTTTTCTATCTGAAGTTGCAG-AGAGCAGA-T-CGCA
1 GCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCA
* * * * *
82263989 TCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTAAGTAA
1 GCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-CA
* * * **
82264033 ACAAGTCTCATC-CTCCTGAAGTTGCAGT-GAGGCAGACTAAATAA
1 GCAAATCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGCA
* * * *
82264077 ACAAATCCTGTCTCCCT-AAGTTGTAGTGGAG
1 GCAAATCTTATCTCCCTGAAGTTGCAGTGGAG
82264108 TGGATTAGAG
Statistics
Matches: 322, Mismatches: 73, Indels: 51
0.72 0.16 0.11
Matches are distributed among these distances:
40 44 0.14
41 13 0.04
42 9 0.03
43 60 0.19
44 156 0.48
45 37 0.11
46 3 0.01
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.27
Consensus pattern (43 bp):
GCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCA
Found at i:82263936 original size:216 final size:217
Alignment explanation
Indices: 82263637--82264117 Score: 718
Period size: 216 Copynumber: 2.2 Consensus size: 217
82263627 CGGAGTAGGT
* * * *
82263637 TGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAACCGATAATCCTATCT
1 TGAAGATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAGAGCCGATAATCCTATCT
* * * *
82263702 CCTTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAG
66 CCCTGAAATTGCAGTGGAGCGGATCAAAACCTTGGATCTTATCTATCTGAAGTTGCAGAGAGCAG
* * * * *
82263767 ATCGCATCTAGTCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTCAG-CAGCAAGTCTTATCCTC
131 ATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAACAAGTCTCATCCTC
*
82263831 CTGAAGTTGCAGTGAGGTAGAC
196 CTGAAGTTGCAGTGAGGCAGAC
82263853 TGAAGATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAGAGCCGATAATCCTATCT
1 TGAAGATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAGAGCCGATAATCCTATCT
* *
82263918 CCCTGAAATTGCAGTGGAGCGGATCAAAACCTTGGGTCTTTTCTATCTGAAGTTGCAGAGAGCAG
66 CCCTGAAATTGCAGTGGAGCGGATCAAAACCTTGGATCTTATCTATCTGAAGTTGCAGAGAGCAG
*
82263983 ATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTAAGTAAACAAGTCTCATCCTC
131 ATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAACAAGTCTCATCCTC
82264048 CTGAAGTTGCAGTGAGGCAGAC
196 CTGAAGTTGCAGTGAGGCAGAC
* * * * **
82264070 T-AA-ATAAACAAATCCTGTCTCCCT-AAGTTGTAGTGGAGTGGATTAGAG
1 TGAAGAT-AGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAGAG
82264118 TGATGGATTT
Statistics
Matches: 240, Mismatches: 23, Indels: 5
0.90 0.09 0.02
Matches are distributed among these distances:
215 23 0.10
216 181 0.75
217 36 0.15
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (217 bp):
TGAAGATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAGAGCCGATAATCCTATCT
CCCTGAAATTGCAGTGGAGCGGATCAAAACCTTGGATCTTATCTATCTGAAGTTGCAGAGAGCAG
ATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAACAAGTCTCATCCTC
CTGAAGTTGCAGTGAGGCAGAC
Found at i:82271783 original size:99 final size:96
Alignment explanation
Indices: 82271603--82271832 Score: 289
Period size: 99 Copynumber: 2.4 Consensus size: 96
82271593 CCGGAAGAGA
* * * *
82271603 AGAGCTTTCCATTGAAGAAGATGGATCTGTTCCCAAATCGTCTTCAAATTCTGGCTCAGCTGACT
1 AGAGGTTTTCATTGAAGAAGATGGATCTGTTCCCAAATCGTCGTCAAACTCTGGCTCAGCTGACT
* * *
82271668 GCTGTACGATTGATATGGTTCCAACCGAAAT
66 GCAGTACGAATGATATGGTTCCAACCAAAAT
* *
82271699 AGAGGAGTTTTTCATTGAAGAAGATGGATCTGTTCCCAAGTCGTCGTCAACCTCTGGCTCAGCTG
1 AGA-G-G-TTTTCATTGAAGAAGATGGATCTGTTCCCAAATCGTCGTCAAACTCTGGCTCAGCTG
* * *
82271764 ACTGCAGTACGAATGATATGTTTGCACCCAAAAT
63 ACTGCAGTACGAATGATATGGTTCCAACCAAAAT
****
82271798 AGAGGTTTTCCCCAAAGAAGATGGATCTGTTCCCA
1 AGAGGTTTTCATTGAAGAAGATGGATCTGTTCCCA
82271833 GGTCAGCTGA
Statistics
Matches: 115, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
96 29 0.25
97 2 0.02
98 1 0.01
99 83 0.72
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (96 bp):
AGAGGTTTTCATTGAAGAAGATGGATCTGTTCCCAAATCGTCGTCAAACTCTGGCTCAGCTGACT
GCAGTACGAATGATATGGTTCCAACCAAAAT
Found at i:82275945 original size:18 final size:19
Alignment explanation
Indices: 82275912--82275947 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
82275902 ATTCAAATTT
*
82275912 TTTTTAAATTATTATATTA
1 TTTTTAAATTAATATATTA
82275931 TTTTTAAA-TAATATATT
1 TTTTTAAATTAATATATT
82275948 TAAAATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (19 bp):
TTTTTAAATTAATATATTA
Found at i:82282051 original size:3 final size:3
Alignment explanation
Indices: 82282039--82282088 Score: 66
Period size: 3 Copynumber: 17.0 Consensus size: 3
82282029 GTAATTATAT
* * *
82282039 TAA T-A TAA TAA TAG CAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
82282086 TAA
1 TAA
82282089 CATTAAAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
2 2 0.05
3 38 0.95
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:82283775 original size:5 final size:5
Alignment explanation
Indices: 82283765--82283827 Score: 101
Period size: 5 Copynumber: 12.8 Consensus size: 5
82283755 TAAAACTAAA
**
82283765 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT -TAAA
1 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT
82283814 ATATT ATATT ATAT
1 ATATT ATATT ATAT
82283828 ATTTAAAGTA
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
4 2 0.04
5 51 0.96
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (5 bp):
ATATT
Found at i:82289663 original size:5 final size:5
Alignment explanation
Indices: 82289653--82289715 Score: 101
Period size: 5 Copynumber: 12.8 Consensus size: 5
82289643 TACTTTAAAT
* *
82289653 ATATA ATATA ATATT TTA-A ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
82289702 ATATA ATATA ATAT
1 ATATA ATATA ATAT
82289716 TTTAGTTTTA
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
4 2 0.04
5 51 0.96
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (5 bp):
ATATA
Found at i:82301731 original size:20 final size:19
Alignment explanation
Indices: 82301693--82301735 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
82301683 TTTAAATTTC
82301693 TATAAATATTTGGCAATAT
1 TATAAATATTTGGCAATAT
* * *
82301712 ATATAAATGTTTTGCTATAT
1 -TATAAATATTTGGCAATAT
82301732 TATA
1 TATA
82301736 TTATTAGTCA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.40, C:0.05, G:0.09, T:0.47
Consensus pattern (19 bp):
TATAAATATTTGGCAATAT
Found at i:82305088 original size:42 final size:40
Alignment explanation
Indices: 82305042--82305195 Score: 152
Period size: 42 Copynumber: 3.7 Consensus size: 40
82305032 TAATTTTTTA
*
82305042 TTTTTTTTTATTTTTATAAATTTTAAAATACTTTTAAAATAC
1 TTTTTTTTT-TTTTT-TAAATTTTAAAATATTTTTAAAATAC
*
82305084 TTTTTTTAAATTTTTTT-AATTTTAAAAATATTTTTAAAATAC
1 TTTTTTT--TTTTTTTTAAATTTT-AAAATATTTTTAAAATAC
** *
82305126 -TTTTAATTTTTTTT-AATTTTAAAATATTTTTAAAATAAAT
1 TTTTTTTTTTTTTTTAAATTTTAAAATATTTTTAAAAT--AC
*
82305166 TTTTTTATTTTTGTTTTAATTTTTAAAATA
1 TTTTTT-TTTTT-TTTTAAATTTTAAAATA
82305196 AATTTTTGGT
Statistics
Matches: 94, Mismatches: 9, Indels: 16
0.79 0.08 0.13
Matches are distributed among these distances:
38 16 0.17
39 13 0.14
40 1 0.01
41 14 0.15
42 29 0.31
43 9 0.10
44 12 0.13
ACGTcount: A:0.36, C:0.02, G:0.01, T:0.62
Consensus pattern (40 bp):
TTTTTTTTTTTTTTTAAATTTTAAAATATTTTTAAAATAC
Found at i:82305144 original size:80 final size:82
Alignment explanation
Indices: 82305046--82305195 Score: 214
Period size: 80 Copynumber: 1.9 Consensus size: 82
82305036 TTTTTATTTT
* *
82305046 TTTTTATTTTTATAAATTTTAAAATACTTTTAAAAT-ACTTTTTTTAAATTT-TTTTAATTTTAA
1 TTTTAATTTTTATAAATTTTAAAATACTTTTAAAATAAATTTTTTTAAATTTGTTTTAATTTTAA
82305109 AAATATTTTTAAAATAC
66 AAATATTTTTAAAATAC
* * * ** *
82305126 TTTTAATTTTTTTTAATTTTAAAATATTTTTAAAATAAATTTTTTTATTTTTGTTTTAATTTTTA
1 TTTTAATTTTTATAAATTTTAAAATACTTTTAAAATAAATTTTTTTAAATTTGTTTTAATTTTAA
82305191 AAATA
66 AAATA
82305196 AATTTTTGGT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
80 32 0.53
81 12 0.20
82 16 0.27
ACGTcount: A:0.37, C:0.02, G:0.01, T:0.61
Consensus pattern (82 bp):
TTTTAATTTTTATAAATTTTAAAATACTTTTAAAATAAATTTTTTTAAATTTGTTTTAATTTTAA
AAATATTTTTAAAATAC
Found at i:82305167 original size:33 final size:32
Alignment explanation
Indices: 82305133--82305202 Score: 86
Period size: 33 Copynumber: 2.2 Consensus size: 32
82305123 TACTTTTAAT
82305133 TTTTTTTAATTTTAAAATATTTTTAAAATAAA
1 TTTTTTTAATTTTAAAATATTTTTAAAATAAA
* ****
82305165 TTTTTTTATTTTTGTTTTAATTTTTAAAATAAA
1 TTTTTTTAATTTTAAAAT-ATTTTTAAAATAAA
82305198 TTTTT
1 TTTTT
82305203 GGTATTTATT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
32 13 0.41
33 19 0.59
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.64
Consensus pattern (32 bp):
TTTTTTTAATTTTAAAATATTTTTAAAATAAA
Found at i:82305169 original size:13 final size:11
Alignment explanation
Indices: 82305050--82305162 Score: 52
Period size: 11 Copynumber: 11.2 Consensus size: 11
82305040 TATTTTTTTT
*
82305050 TATTTTTATAA
1 TATTTTTAAAA
82305061 -A-TTTTAAAA
1 TATTTTTAAAA
*
82305070 TACTTTTAAAA
1 TATTTTTAAAA
*
82305081 TACTTTTTTTAAA
1 TA--TTTTTAAAA
*
82305094 T-TTTTT--TA
1 TATTTTTAAAA
*
82305102 -ATTTTAAAAA
1 TATTTTTAAAA
82305112 TATTTTTAAAA
1 TATTTTTAAAA
*
82305123 TACTTTT--AA
1 TATTTTTAAAA
*
82305132 T-TTTTT---T
1 TATTTTTAAAA
*
82305139 TAATTTTAAAA
1 TATTTTTAAAA
82305150 TATTTTTAAAA
1 TATTTTTAAAA
82305161 TA
1 TA
82305163 AATTTTTTTA
Statistics
Matches: 77, Mismatches: 13, Indels: 24
0.68 0.11 0.21
Matches are distributed among these distances:
7 1 0.01
8 13 0.17
9 10 0.13
10 8 0.10
11 37 0.48
13 8 0.10
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.58
Consensus pattern (11 bp):
TATTTTTAAAA
Found at i:82306611 original size:60 final size:60
Alignment explanation
Indices: 82306535--82306681 Score: 181
Period size: 60 Copynumber: 2.5 Consensus size: 60
82306525 ACAAGTTTGT
* * * *
82306535 TTTAGGACTGCTTATTATGTTTGGCTGATGTGGCTATCTGCATGACCA-TTTCAAGGAAGA
1 TTTACGACTGCTTATTAGGTTTGGCTGATGTGGATATATGCATGA-CAGTTTCAAGGAAGA
* * * * *
82306595 TTTACGAGTGCTTATTAGGCTTGGCTGATGTGGATATATGCTTGAGAGTTTCAAGTAAGA
1 TTTACGACTGCTTATTAGGTTTGGCTGATGTGGATATATGCATGACAGTTTCAAGGAAGA
*
82306655 TTTAGGACTGCTTATT-GGTTTGGCTGA
1 TTTACGACTGCTTATTAGGTTTGGCTGA
82306682 CCTTGGTATC
Statistics
Matches: 74, Mismatches: 12, Indels: 3
0.83 0.13 0.03
Matches are distributed among these distances:
59 11 0.15
60 63 0.85
ACGTcount: A:0.22, C:0.12, G:0.27, T:0.38
Consensus pattern (60 bp):
TTTACGACTGCTTATTAGGTTTGGCTGATGTGGATATATGCATGACAGTTTCAAGGAAGA
Found at i:82318855 original size:22 final size:23
Alignment explanation
Indices: 82318819--82318867 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 23
82318809 TAAAATACAA
*
82318819 TAAATTAATAATAAAAGTATATC
1 TAAATTAATAATAAAAGTAAATC
*
82318842 TAAATTTA-AATAAAAGTAAATC
1 TAAATTAATAATAAAAGTAAATC
82318864 TAAA
1 TAAA
82318868 CTAAATTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 17 0.71
23 7 0.29
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.33
Consensus pattern (23 bp):
TAAATTAATAATAAAAGTAAATC
Found at i:82322462 original size:16 final size:15
Alignment explanation
Indices: 82322441--82322491 Score: 61
Period size: 13 Copynumber: 3.5 Consensus size: 15
82322431 AAAATATTAT
82322441 AATTATTCATATAATA
1 AATTATT-ATATAATA
82322457 AATTATTA-AT-ATA
1 AATTATTATATAATA
* *
82322470 ATTTATTATTTAATA
1 AATTATTATATAATA
82322485 AATTATT
1 AATTATT
82322492 TAATATTCTA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
13 10 0.33
14 3 0.10
15 10 0.33
16 7 0.23
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (15 bp):
AATTATTATATAATA
Found at i:82322469 original size:28 final size:29
Alignment explanation
Indices: 82322438--82322497 Score: 88
Period size: 28 Copynumber: 2.1 Consensus size: 29
82322428 AATAAAATAT
82322438 TATAA-TTATTCATATAATAAATTA-TTAA
1 TATAATTTATT-ATATAATAAATTATTTAA
*
82322466 TATAATTTATTATTTAATAAATTATTTAA
1 TATAATTTATTATATAATAAATTATTTAA
82322495 TAT
1 TAT
82322498 TCTAAATTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
28 17 0.59
29 12 0.41
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (29 bp):
TATAATTTATTATATAATAAATTATTTAA
Found at i:82322525 original size:13 final size:14
Alignment explanation
Indices: 82322507--82322548 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
82322497 TTCTAAATTT
82322507 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
82322520 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
82322535 ATTTTAAATAATAT
1 ATTTT-AATAATAT
82322549 TCTTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:82322533 original size:16 final size:16
Alignment explanation
Indices: 82322511--82322547 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
82322501 AAATTTATTT
82322511 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
82322528 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
82322543 TAATA
1 TAATA
82322548 TTCTTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:82322600 original size:15 final size:15
Alignment explanation
Indices: 82322580--82322636 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
82322570 ATACAATATT
82322580 AATATTTTAATAATA
1 AATATTTTAATAATA
*
82322595 AATATTTATTACGATTATA
1 AATA-TT-TTA--ATAATA
* *
82322614 AATATATTAACAATA
1 AATATTTTAATAATA
82322629 AATATTTT
1 AATATTTT
82322637 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 15 0.45
16 2 0.06
17 6 0.18
18 1 0.03
19 9 0.27
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.46
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:82326933 original size:7 final size:8
Alignment explanation
Indices: 82326917--82326941 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
82326907 AAAGTACAAT
82326917 AAAATAAA
1 AAAATAAA
82326925 AAAATAAA
1 AAAATAAA
82326933 AAAATAAA
1 AAAATAAA
82326941 A
1 A
82326942 TTGTTTTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAATAAA
Found at i:82327049 original size:18 final size:18
Alignment explanation
Indices: 82326998--82327050 Score: 56
Period size: 18 Copynumber: 2.9 Consensus size: 18
82326988 GGTATATTTT
*
82326998 TATAAA-ATACAAATAGTA
1 TATAAATATA-AAATATTA
*
82327016 TA-AAATATTAACATATTA
1 TATAAATA-TAAAATATTA
82327034 TATAAATATAAAATATT
1 TATAAATATAAAATATT
82327051 TAAATACGAT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
17 3 0.10
18 19 0.66
19 7 0.24
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.36
Consensus pattern (18 bp):
TATAAATATAAAATATTA
Found at i:82328490 original size:19 final size:19
Alignment explanation
Indices: 82328454--82328508 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 19
82328444 CTTATATACG
* *
82328454 TAAAATAAATAATAAATAA
1 TAAAATATATATTAAATAA
* * *
82328473 TATATTTTATATTAAATAA
1 TAAAATATATATTAAATAA
82328492 TAAAATATATATTAAAT
1 TAAAATATATATTAAAT
82328509 TTTCATTATG
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (19 bp):
TAAAATATATATTAAATAA
Found at i:82335768 original size:15 final size:15
Alignment explanation
Indices: 82335716--82335769 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
82335706 TAAAAACAAT
*
82335716 TTTAAATTAAAAAAA
1 TTTAAATTAACAAAA
* **
82335731 ATTAAATTTAACATTA
1 TTTAAA-TTAACAAAA
*
82335747 TTGAAATTAACAAAA
1 TTTAAATTAACAAAA
82335762 TTTAAATT
1 TTTAAATT
82335770 TTTGTCTTAT
Statistics
Matches: 29, Mismatches: 9, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
15 19 0.66
16 10 0.34
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.39
Consensus pattern (15 bp):
TTTAAATTAACAAAA
Found at i:82348618 original size:48 final size:46
Alignment explanation
Indices: 82348553--82348780 Score: 145
Period size: 48 Copynumber: 4.7 Consensus size: 46
82348543 ATGTGTTTAA
* *
82348553 GAGTAGGTCATATTATTACTTGTTGTAAGTCTCCCCTATGCATTTGG
1 GAGTAGGACATATTATTACTT-TTGTAAGCCTCCCCTATGCATTTGG
* * ** *
82348600 GAGTAGGACTATATTATTACGTTCTGTAAGCCTCACCCCATGTGTCTGG
1 GAGTAGGAC-ATATTATTAC-TTTTGTAAGCCTC-CCCTATGCATTTGG
* * * **
82348649 AAGTAGGGACATATTATTATTTTCTATAAGCCTCCCCTATGCATTTAA
1 GAGTA-GGACATATTATTACTTT-TGTAAGCCTCCCCTATGCATTTGG
* * * * * * *
82348697 AAGTATGGTCATATGATTACCTTTCGTAAG-CTCCCCCCATGCATCTAG
1 GAGTA-GGACATATTATTA-CTTTTGTAAGCCT-CCCCTATGCATTTGG
* *
82348745 GAGCAGGACTATATTATT-CTCTTCTATAAGCCTCCC
1 GAGTAGGAC-ATATTATTACT-TT-TGTAAGCCTCCC
82348781 TATATACATC
Statistics
Matches: 138, Mismatches: 32, Indels: 21
0.72 0.17 0.11
Matches are distributed among these distances:
46 2 0.01
47 15 0.11
48 78 0.57
49 39 0.28
50 4 0.03
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (46 bp):
GAGTAGGACATATTATTACTTTTGTAAGCCTCCCCTATGCATTTGG
Found at i:82348716 original size:97 final size:95
Alignment explanation
Indices: 82348561--82348780 Score: 214
Period size: 97 Copynumber: 2.3 Consensus size: 95
82348551 AAGAGTAGGT
* * * *** * *
82348561 CATATTATTACTTGT-TGTAAGTCTCCCCTATGCATTTGGGAGTAGGACTATATTATTA-CGTTC
1 CATATTATTA-TTTTCTATAAGCCTCCCCTATGCATTTAAAAGTAGGACTATATGATTACCTTTC
** *
82348624 TGTAAGCCTCACCCCATGTGTCT-GGAAGTAGGGA
65 -GTAAG-CTCACCCCATGCATCTAGG-AGCA-GGA
*
82348658 CATATTATTATTTTCTATAAGCCTCCCCTATGCATTTAAAAGTATGGTC-ATATGATTACCTTTC
1 CATATTATTATTTTCTATAAGCCTCCCCTATGCATTTAAAAGTA-GGACTATATGATTACCTTTC
*
82348722 GTAAGCTCCCCCCATGCATCTAGGAGCAGGA
65 GTAAGCTCACCCCATGCATCTAGGAGCAGGA
* *
82348753 CTATATTATTCTCTTCTATAAGCCTCCC
1 C-ATATTATTATTTTCTATAAGCCTCCC
82348781 TATATACATC
Statistics
Matches: 103, Mismatches: 15, Indels: 11
0.80 0.12 0.09
Matches are distributed among these distances:
95 4 0.04
96 43 0.42
97 49 0.48
98 7 0.07
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.35
Consensus pattern (95 bp):
CATATTATTATTTTCTATAAGCCTCCCCTATGCATTTAAAAGTAGGACTATATGATTACCTTTCG
TAAGCTCACCCCATGCATCTAGGAGCAGGA
Found at i:82361589 original size:42 final size:44
Alignment explanation
Indices: 82361525--82361627 Score: 131
Period size: 42 Copynumber: 2.4 Consensus size: 44
82361515 ATCGATTTGA
*
82361525 GATTTACGTGTAAGACCATGTTTGAGACATTGGCATCG-TATAT
1 GATTTACGTGTAAGACCATGTTTGAGACAGTGGCATCGTTATAT
* * *
82361568 GATTT-CGTGTAAGACCTTGTTTGGGACAGTGGCATCGTTATTT
1 GATTTACGTGTAAGACCATGTTTGAGACAGTGGCATCGTTATAT
* *
82361611 GA-TTACATGTAAAACCA
1 GATTTACGTGTAAGACCA
82361628 CATCTGGGAT
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
42 31 0.61
43 20 0.39
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (44 bp):
GATTTACGTGTAAGACCATGTTTGAGACAGTGGCATCGTTATAT
Found at i:82363903 original size:9 final size:9
Alignment explanation
Indices: 82363891--82363923 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
82363881 TTAGTTTAGG
*
82363891 TTAATTAGT
1 TTAATTACT
82363900 TTAATTACT
1 TTAATTACT
82363909 TTAATTACT
1 TTAATTACT
82363918 TTAATT
1 TTAATT
82363924 TGAAGTCGCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.33, C:0.06, G:0.03, T:0.58
Consensus pattern (9 bp):
TTAATTACT
Found at i:82368774 original size:2 final size:2
Alignment explanation
Indices: 82368767--82368791 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
82368757 ATATCAGCTG
82368767 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
82368792 CACCTTCAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:82369239 original size:18 final size:17
Alignment explanation
Indices: 82369216--82369250 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
82369206 ATAAATTATG
82369216 TATTTTTAAATATTTTTA
1 TATTTTTAAA-ATTTTTA
*
82369234 TATTTTTAGAATTTTTA
1 TATTTTTAAAATTTTTA
82369251 AAATTTTCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (17 bp):
TATTTTTAAAATTTTTA
Found at i:82371335 original size:989 final size:989
Alignment explanation
Indices: 82369419--82372333 Score: 5794
Period size: 989 Copynumber: 2.9 Consensus size: 989
82369409 AACATAATTN
82369419 TGTGGGCCGCTTTGTGTGGACTGCATGGTCTCACATGCGGCCATGTCACCCCTAAAACCCTAGGA
1 TGTGGGCCGCTTTGTGTGGACTGCATGGTCTCACATGCGGCCATGTCACCCCTAAAACCCTAGGA
82369484 TATTCGACTTTCACACGGCCTCCCATATGCCTATGTCTCCCTTTATATTGAAATTTCAAATGTCA
66 TATTCGACTTTCACACGGCCTCCCATATGCCTATGTCTCCCTTTATATTGAAATTTCAAATGTCA
82369549 CACGACCTCAATCTTTCACACGACCTAGCCACACGGTCGTGTACCCCTTCCACAGAGCCTAAGGC
131 CACGACCTCAATCTTTCACACGACCTAGCCACACGGTCGTGTACCCCTTCCACAGAGCCTAAGGC
82369614 TTTCCACACAGCTCAATCACACGACCTTGTGTCCCTTGGAACCAAGGGATTATAGTTTTGACCCA
196 TTTCCACACAGCTCAATCACACGACCTTGTGTCCCTTGGAACCAAGGGATTATAGTTTTGACCCA
82369679 AAATTTTATATTTTGATCAATTTATTCCCTAGATAGGTTTTAAACTATTTTTTAGTGAATTAAAT
261 AAATTTTATATTTTGATCAATTTATTCCCTAGATAGGTTTTAAACTATTTTTTAGTGAATTAAAT
82369744 TATGCAATTAGGTCCCTAATGATATATGACATGCTAGAATCCATGAATGATTAAATTAATACTGT
326 TATGCAATTAGGTCCCTAATGATATATGACATGCTAGAATCCATGAATGATTAAATTAATACTGT
82369809 ATTTATTTGTATCTATGAATATTTGTGTGGATTATAAATAATATATGTTACCTTATATATATGTT
391 ATTTATTTGTATCTATGAATATTTGTGTGGATTATAAATAATATATGTTACCTTATATATATGTT
82369874 TGAAATCATATGAAAAACATGCCCTAATTTATTGTCAACCAAAATATATGAAGAGCTTGACTTTG
456 TGAAATCATATGAAAAACATGCCCTAATTTATTGTCAACCAAAATATATGAAGAGCTTGACTTTG
*
82369939 CTACCTGATTGCCATGTGTTAGAACATTAAATGTTACAATATATGAATGTATTAAATTGACTGTA
521 CTACCTAATTGCCATGTGTTAGAACATTAAATGTTACAATATATGAATGTATTAAATTGACTGTA
82370004 TTGCACTGCATGGGTTGGGCCGGTATGATCGGAGGAAGCAATGACAGTATATTTGCATTTAAATG
586 TTGCACTGCATGGGTTGGGCCGGTATGATCGGAGGAAGCAATGACAGTATATTTGCATTTAAATG
82370069 TTTGTTGTGTACTCACATCCAAAGCAGATTCCAACTGCGTCATTTTACCATGCATTCATAACCCT
651 TTTGTTGTGTACTCACATCCAAAGCAGATTCCAACTGCGTCATTTTACCATGCATTCATAACCCT
82370134 TTGATAGCTTTTATGTACGTGTATGTTGTGTTTCCACGGCCATTGGCAAGTTTCATTTGCAATAT
716 TTGATAGCTTTTATGTACGTGTATGTTGTGTTTCCACGGCCATTGGCAAGTTTCATTTGCAATAT
82370199 TCTGTTGTGTACCTATAACCAAAGTAGATTCCAACTGCATCATTTTGTTGTGTGTCCACAGACGT
781 TCTGTTGTGTACCTATAACCAAAGTAGATTCCAACTGCATCATTTTGTTGTGTGTCCACAGACGT
82370264 TGGCAGTAAAAACTTCAAACTAATGGTGGTTAATCCACAATCTAGTCTTCTAGTGGTTGGAGTTC
846 TGGCAGTAAAAACTTCAAACTAATGGTGGTTAATCCACAATCTAGTCTTCTAGTGGTTGGAGTTC
82370329 CGAGGAATTCTCAATTATGGTGTGTAAAATTAAGGTAAAACTGAACCAAGCCTAGACCACACAAC
911 CGAGGAATTCTCAATTATGGTGTGTAAAATTAAGGTAAAACTGAACCAAGCCTAGACCACACAAC
82370394 CTACCACACGGATG
976 CTACCACACGGATG
82370408 TGTGGGCCGCTTTGTGTGGACTGCATGGTCTCACATGCGGCCATGTCACCCCTAAAACCCTAGGA
1 TGTGGGCCGCTTTGTGTGGACTGCATGGTCTCACATGCGGCCATGTCACCCCTAAAACCCTAGGA
82370473 TATTCGACTTTCACACGGCCTCCCATATGCCTATGTCTCCCTTTATATTGAAATTTCAAATGTCA
66 TATTCGACTTTCACACGGCCTCCCATATGCCTATGTCTCCCTTTATATTGAAATTTCAAATGTCA
82370538 CACGACCTCAATCTTTCACACGACCTAGCCACACGGTCGTGTACCCCTTCCACAGAGCCTAAGGC
131 CACGACCTCAATCTTTCACACGACCTAGCCACACGGTCGTGTACCCCTTCCACAGAGCCTAAGGC
82370603 TTTCCACACAGCTCAATCACACGACCTTGTGTCCCTTGGAACCAAGGGATTATAGTTTTGACCCA
196 TTTCCACACAGCTCAATCACACGACCTTGTGTCCCTTGGAACCAAGGGATTATAGTTTTGACCCA
82370668 AAATTTTATATTTTGATCAATTTATTCCCTAGATAGGTTTTAAACTATTTTTTAGTGAATTAAAT
261 AAATTTTATATTTTGATCAATTTATTCCCTAGATAGGTTTTAAACTATTTTTTAGTGAATTAAAT
*
82370733 TATGCAATTAGGTCCCTGATGATATATGACATGCTAGAATCCATGAATGATTAAATTAATACTGT
326 TATGCAATTAGGTCCCTAATGATATATGACATGCTAGAATCCATGAATGATTAAATTAATACTGT
82370798 ATTTATTTGTATCTATGAATATTTGTGTGGATTATAAATAATATATGTTACCTTATATATATGTT
391 ATTTATTTGTATCTATGAATATTTGTGTGGATTATAAATAATATATGTTACCTTATATATATGTT
82370863 TGAAATCATATGAAAAACATGCCCTAATTTATTGTCAACCAAAATATATGAAGAGCTTGACTTTG
456 TGAAATCATATGAAAAACATGCCCTAATTTATTGTCAACCAAAATATATGAAGAGCTTGACTTTG
82370928 CTACCTAATTGCCATGTGTTAGAACATTAAATGTTACAATATATGAATGTATTAAATTGACTGTA
521 CTACCTAATTGCCATGTGTTAGAACATTAAATGTTACAATATATGAATGTATTAAATTGACTGTA
82370993 TTGCACTGCATGGGTTGGGCCGGTATGATCGGAGGAAGCAATGACAGTATATTTGCATTTAAATG
586 TTGCACTGCATGGGTTGGGCCGGTATGATCGGAGGAAGCAATGACAGTATATTTGCATTTAAATG
82371058 TTTGTTGTGTACTCACATCCAAAGCAGATTCCAACTGCGTCATTTTACCATGCATTCATAACCCT
651 TTTGTTGTGTACTCACATCCAAAGCAGATTCCAACTGCGTCATTTTACCATGCATTCATAACCCT
82371123 TTGATAGCTTTTATGTACGTGTATGTTGTGTTTCCACGGCCATTGGCAAGTTTCATTTGCAATAT
716 TTGATAGCTTTTATGTACGTGTATGTTGTGTTTCCACGGCCATTGGCAAGTTTCATTTGCAATAT
*
82371188 TCTGTTGTGTACCTATAAACAAAGTAGATTCCAACTGCATCATTTTGTTGTGTGTCCACAGACGT
781 TCTGTTGTGTACCTATAACCAAAGTAGATTCCAACTGCATCATTTTGTTGTGTGTCCACAGACGT
82371253 TGGCAGTAAAAACTTCAAACTAATGGTGGTTAATCCACAATCTAGTCTTCTAGTGGTTGGAGTTC
846 TGGCAGTAAAAACTTCAAACTAATGGTGGTTAATCCACAATCTAGTCTTCTAGTGGTTGGAGTTC
82371318 CGAGGAATTCTCAATTATGGTGTGTAAAATTAAGGTAAAACTGAACCAAGCCTAGACCACACAAC
911 CGAGGAATTCTCAATTATGGTGTGTAAAATTAAGGTAAAACTGAACCAAGCCTAGACCACACAAC
82371383 CTACCACACGGATG
976 CTACCACACGGATG
82371397 TGTGGGCCGCTTTGTGTGGACTGCATGGTCTCACATGCGGCCATGTCACCCCTAAAACCCTAGGA
1 TGTGGGCCGCTTTGTGTGGACTGCATGGTCTCACATGCGGCCATGTCACCCCTAAAACCCTAGGA
82371462 TATTCGACTTTCACACGGCCTCCCATATGCCTATGTCTCCCTTTATATTGAAATTTCAAATGTCA
66 TATTCGACTTTCACACGGCCTCCCATATGCCTATGTCTCCCTTTATATTGAAATTTCAAATGTCA
82371527 CACGACCTCAATCTTTCACACGACCTAGCCACACGGTCGTGTACCCCTTCCACAGAGCCTAAGGC
131 CACGACCTCAATCTTTCACACGACCTAGCCACACGGTCGTGTACCCCTTCCACAGAGCCTAAGGC
82371592 TTTCCACACAGCTCAATCACACGACCTTGTGTCCCTTGGAACCAAGGGATTATAGTTTTGACCCA
196 TTTCCACACAGCTCAATCACACGACCTTGTGTCCCTTGGAACCAAGGGATTATAGTTTTGACCCA
82371657 AAATTTTATATTTTGATCAATTTATTCCCTAGATAGGTTTTAAACTATTTTTTAGTGAATTAAAT
261 AAATTTTATATTTTGATCAATTTATTCCCTAGATAGGTTTTAAACTATTTTTTAGTGAATTAAAT
82371722 TATGCAATTAGGTCCCTAATGATATATGACATGCTAGAATCCATGAATGATTAAATTAATACTGT
326 TATGCAATTAGGTCCCTAATGATATATGACATGCTAGAATCCATGAATGATTAAATTAATACTGT
82371787 ATTTATTTGTATCTATGAATATTTGTGTGGATTATAAATAATATATGTTACCTTATATATATGTT
391 ATTTATTTGTATCTATGAATATTTGTGTGGATTATAAATAATATATGTTACCTTATATATATGTT
82371852 TGAAATCATATGAAAAACATGCCCTAATTTATTGTCAACCAAAATATATGAAGAGCTTGACTTTG
456 TGAAATCATATGAAAAACATGCCCTAATTTATTGTCAACCAAAATATATGAAGAGCTTGACTTTG
82371917 CTACCTAATTGCCATGTGTTAGAACATTAAATGTTACAATATATGAATGTATTAAATTGACTGTA
521 CTACCTAATTGCCATGTGTTAGAACATTAAATGTTACAATATATGAATGTATTAAATTGACTGTA
82371982 TTGCACTGCATGGGTTGGGCCGGTATGATCGGAGGAAGCAATGACAGTATATTTGCATTTAAATG
586 TTGCACTGCATGGGTTGGGCCGGTATGATCGGAGGAAGCAATGACAGTATATTTGCATTTAAATG
82372047 TTTGTTGTGTACTCACATCCAAAGCAGATTCCAACTGCGTCATTTTACCATGCATTCATAACCCT
651 TTTGTTGTGTACTCACATCCAAAGCAGATTCCAACTGCGTCATTTTACCATGCATTCATAACCCT
82372112 TTGATAGCTTTTATGTACGTGTATGTTGTGTTTCCACGGCCATTGGCAAGTTTCATTTGCAATAT
716 TTGATAGCTTTTATGTACGTGTATGTTGTGTTTCCACGGCCATTGGCAAGTTTCATTTGCAATAT
82372177 TCTGTTGTGTACCTATAACCAAAGTAGATTCCAACTGCATCATTTTGTTGTGTGTCCACAGACGT
781 TCTGTTGTGTACCTATAACCAAAGTAGATTCCAACTGCATCATTTTGTTGTGTGTCCACAGACGT
82372242 TGGCAGTAAAAACTTCAAACTAATGGTGGTTAATCCACAATCTAGTCTTCTAGTGGTTGGAGTTC
846 TGGCAGTAAAAACTTCAAACTAATGGTGGTTAATCCACAATCTAGTCTTCTAGTGGTTGGAGTTC
*
82372307 CGAGGAACTCTCAATTATGGTGTGTAA
911 CGAGGAATTCTCAATTATGGTGTGTAA
82372334 CGGTAGGGTA
Statistics
Matches: 1920, Mismatches: 6, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
989 1920 1.00
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (989 bp):
TGTGGGCCGCTTTGTGTGGACTGCATGGTCTCACATGCGGCCATGTCACCCCTAAAACCCTAGGA
TATTCGACTTTCACACGGCCTCCCATATGCCTATGTCTCCCTTTATATTGAAATTTCAAATGTCA
CACGACCTCAATCTTTCACACGACCTAGCCACACGGTCGTGTACCCCTTCCACAGAGCCTAAGGC
TTTCCACACAGCTCAATCACACGACCTTGTGTCCCTTGGAACCAAGGGATTATAGTTTTGACCCA
AAATTTTATATTTTGATCAATTTATTCCCTAGATAGGTTTTAAACTATTTTTTAGTGAATTAAAT
TATGCAATTAGGTCCCTAATGATATATGACATGCTAGAATCCATGAATGATTAAATTAATACTGT
ATTTATTTGTATCTATGAATATTTGTGTGGATTATAAATAATATATGTTACCTTATATATATGTT
TGAAATCATATGAAAAACATGCCCTAATTTATTGTCAACCAAAATATATGAAGAGCTTGACTTTG
CTACCTAATTGCCATGTGTTAGAACATTAAATGTTACAATATATGAATGTATTAAATTGACTGTA
TTGCACTGCATGGGTTGGGCCGGTATGATCGGAGGAAGCAATGACAGTATATTTGCATTTAAATG
TTTGTTGTGTACTCACATCCAAAGCAGATTCCAACTGCGTCATTTTACCATGCATTCATAACCCT
TTGATAGCTTTTATGTACGTGTATGTTGTGTTTCCACGGCCATTGGCAAGTTTCATTTGCAATAT
TCTGTTGTGTACCTATAACCAAAGTAGATTCCAACTGCATCATTTTGTTGTGTGTCCACAGACGT
TGGCAGTAAAAACTTCAAACTAATGGTGGTTAATCCACAATCTAGTCTTCTAGTGGTTGGAGTTC
CGAGGAATTCTCAATTATGGTGTGTAAAATTAAGGTAAAACTGAACCAAGCCTAGACCACACAAC
CTACCACACGGATG
Found at i:82379746 original size:16 final size:16
Alignment explanation
Indices: 82379721--82379751 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
82379711 CTAACGTGCA
82379721 TTTTTAATAATTTTAT
1 TTTTTAATAATTTTAT
*
82379737 TTTTTTATAATTTTA
1 TTTTTAATAATTTTA
82379752 AAAAATAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTTTAATAATTTTAT
Found at i:82380172 original size:14 final size:14
Alignment explanation
Indices: 82380143--82380198 Score: 53
Period size: 14 Copynumber: 3.9 Consensus size: 14
82380133 TTATTAGAAA
*
82380143 TAAAAATAATATATT
1 TAAAAAT-ATAAATT
82380158 TAAAAATATAAATT
1 TAAAAATATAAATT
82380172 TATAAAA-A-AAAGTT
1 TA-AAAATATAAA-TT
82380186 TAAAAATTATAAA
1 TAAAAA-TATAAA
82380199 AAGAAATTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
13 7 0.20
14 13 0.37
15 12 0.34
16 3 0.09
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (14 bp):
TAAAAATATAAATT
Found at i:82384086 original size:5 final size:5
Alignment explanation
Indices: 82384076--82384114 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
82384066 TCCTAGGATG
* *
82384076 TGAAT TGAAT TGAAT TGAAT ATTAAT TGTAT TGAAT TGA
1 TGAAT TGAAT TGAAT TGAAT -TGAAT TGAAT TGAAT TGA
82384115 GCTAAATTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 25 0.86
6 4 0.14
ACGTcount: A:0.38, C:0.00, G:0.18, T:0.44
Consensus pattern (5 bp):
TGAAT
Found at i:82384732 original size:24 final size:24
Alignment explanation
Indices: 82384705--82384766 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
82384695 TGGCTCTTCG
*
82384705 GAGCTACCTATTATTGGCTCTCAT
1 GAGCTTCCTATTATTGGCTCTCAT
*
82384729 GAGCTTCCTAATTA-TGGCTCTTAT
1 GAGCTTCCT-ATTATTGGCTCTCAT
*
82384753 GAGCTTCCTGTTAT
1 GAGCTTCCTATTAT
82384767 ACAGCCCGGA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
23 3 0.09
24 26 0.79
25 4 0.12
ACGTcount: A:0.19, C:0.23, G:0.18, T:0.40
Consensus pattern (24 bp):
GAGCTTCCTATTATTGGCTCTCAT
Found at i:82391835 original size:5 final size:5
Alignment explanation
Indices: 82391825--82391863 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
82391815 TCCTAAGATG
* *
82391825 TGAAT TGAAT TGAAT TGAAT ATGAAT TGTAT TAAAT TGA
1 TGAAT TGAAT TGAAT TGAAT -TGAAT TGAAT TGAAT TGA
82391864 GCTAAATTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41
Consensus pattern (5 bp):
TGAAT
Found at i:82392424 original size:23 final size:23
Alignment explanation
Indices: 82392396--82392443 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
82392386 TTCCTGATTA
* *
82392396 ATGGCTCTCTAGAGCTTCCCGAT
1 ATGGCTCGCTAGAACTTCCCGAT
* *
82392419 ATGGCTCGCTTGAACTTTCCGAT
1 ATGGCTCGCTAGAACTTCCCGAT
82392442 AT
1 AT
82392444 ATGGTTATCC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.19, C:0.27, G:0.21, T:0.33
Consensus pattern (23 bp):
ATGGCTCGCTAGAACTTCCCGAT
Found at i:82396223 original size:125 final size:125
Alignment explanation
Indices: 82396001--82396246 Score: 483
Period size: 125 Copynumber: 2.0 Consensus size: 125
82395991 ACACAGTTGC
82396001 AAGAACTAACTGATAGAGGTTTTCTTCAACCTAGTTCTTTACCTTGGGGTGCGTCAGTTCTGTTT
1 AAGAACTAACTGATAGAGGTTTTCTTCAACCTAGTTCTTTACCTTGGGGTGCGTCAGTTCTGTTT
82396066 GTTAAGAAGAAAGATGGATCTCTGAGATTGTGTATTGATTACAGACAGCTCAATAAAGTT
66 GTTAAGAAGAAAGATGGATCTCTGAGATTGTGTATTGATTACAGACAGCTCAATAAAGTT
*
82396126 AAGAACTAACTGATAGAGGTTTTCTTCAACCTAGTTCTTTACCTTGGGGTGCTTCAGTTCTGTTT
1 AAGAACTAACTGATAGAGGTTTTCTTCAACCTAGTTCTTTACCTTGGGGTGCGTCAGTTCTGTTT
82396191 GTTAAGAAGAAAGATGGATCTCTGAGATTGTGTATTGATTACAGACAGCTCAATAA
66 GTTAAGAAGAAAGATGGATCTCTGAGATTGTGTATTGATTACAGACAGCTCAATAA
82396247 GGTCACAATT
Statistics
Matches: 120, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
125 120 1.00
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.35
Consensus pattern (125 bp):
AAGAACTAACTGATAGAGGTTTTCTTCAACCTAGTTCTTTACCTTGGGGTGCGTCAGTTCTGTTT
GTTAAGAAGAAAGATGGATCTCTGAGATTGTGTATTGATTACAGACAGCTCAATAAAGTT
Found at i:82399734 original size:5 final size:5
Alignment explanation
Indices: 82399724--82399762 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
82399714 TCCTAAGATG
* *
82399724 TGAAT TGAAT TGAAT TGAAT ATGAAT TGTAT TAAAT TGA
1 TGAAT TGAAT TGAAT TGAAT -TGAAT TGAAT TGAAT TGA
82399763 GCTAAATTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41
Consensus pattern (5 bp):
TGAAT
Found at i:82400323 original size:23 final size:23
Alignment explanation
Indices: 82400295--82400342 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
82400285 TTCCTGATTA
* *
82400295 ATGGCTCTCTAGAGCTTCCCGAT
1 ATGGCTCGCTAGAACTTCCCGAT
* *
82400318 ATGGCTCGCTTGAACTTTCCGAT
1 ATGGCTCGCTAGAACTTCCCGAT
82400341 AT
1 AT
82400343 ATGGTTATCC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.19, C:0.27, G:0.21, T:0.33
Consensus pattern (23 bp):
ATGGCTCGCTAGAACTTCCCGAT
Found at i:82401154 original size:120 final size:120
Alignment explanation
Indices: 82400941--82401180 Score: 471
Period size: 120 Copynumber: 2.0 Consensus size: 120
82400931 CTATCCATTT
82400941 GCCCATTTCGGTACATTTAGAAAACTAATTTTTTATTATAATGGCATGTATAAGGTAAATTGGCT
1 GCCCATTTCGGTACATTTAGAAAACTAATTTTTTATTATAATGGCATGTATAAGGTAAATTGGCT
*
82401006 AATATTGGCTTAATAGCATTTTGTTGTAAGGAGCTATTGGAATAGCTTATGTTGG
66 AATATTGGCCTAATAGCATTTTGTTGTAAGGAGCTATTGGAATAGCTTATGTTGG
82401061 GCCCATTTCGGTACATTTAGAAAACTAATTTTTTATTATAATGGCATGTATAAGGTAAATTGGCT
1 GCCCATTTCGGTACATTTAGAAAACTAATTTTTTATTATAATGGCATGTATAAGGTAAATTGGCT
82401126 AATATTGGCCTAATAGCATTTTGTTGTAAGGAGCTATTGGAATAGCTTATGTTGG
66 AATATTGGCCTAATAGCATTTTGTTGTAAGGAGCTATTGGAATAGCTTATGTTGG
82401181 ACATATTTTG
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 119 1.00
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (120 bp):
GCCCATTTCGGTACATTTAGAAAACTAATTTTTTATTATAATGGCATGTATAAGGTAAATTGGCT
AATATTGGCCTAATAGCATTTTGTTGTAAGGAGCTATTGGAATAGCTTATGTTGG
Found at i:82403256 original size:11 final size:11
Alignment explanation
Indices: 82403242--82403292 Score: 61
Period size: 11 Copynumber: 4.7 Consensus size: 11
82403232 AATAAATTAC
82403242 AAATTTAAAAT
1 AAATTTAAAAT
82403253 AAATTT-AAAT
1 AAATTTAAAAT
*
82403263 -AATTAAATAAT
1 AAATTTAA-AAT
*
82403274 AATTTTAAAAT
1 AAATTTAAAAT
82403285 AAATTTAA
1 AAATTTAA
82403293 TTTTTATTCT
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
9 4 0.12
10 5 0.15
11 19 0.58
12 5 0.15
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (11 bp):
AAATTTAAAAT
Found at i:82405691 original size:90 final size:88
Alignment explanation
Indices: 82405515--82405680 Score: 198
Period size: 90 Copynumber: 1.9 Consensus size: 88
82405505 ATTCTGTTGA
* * *
82405515 ATACTTAAACTTTTAAAATGTATAAAAAAGCCCTCAAACTTTTTCAAAAAAGTAATTAAGTCACT
1 ATACTTAAACTTTAAAAATGTATAAAAAAGCCCTCAAACTTTTTCAAAAAAGCAATTAAGACACT
82405580 ACTTGTTTTTTTTTACTCAATTCG
66 A-TTGTTTTTTTTTACTCAATTCG
** *
82405604 ATACTTAAACTGTTAAAATATGTA-AAAAAAGGTTCTCAAACTTTTT-TAAAAAGCAATTAA-AC
1 ATACTTAAACT-TTAAAA-ATGTATAAAAAA-GCCCTCAAACTTTTTCAAAAAAGCAATTAAGAC
82405666 -CT-TTGTTTTTCTTTT
63 ACTATTGTTTTT-TTTT
82405681 TGCACTCAAT
Statistics
Matches: 67, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
86 8 0.12
87 4 0.06
88 2 0.03
89 12 0.18
90 23 0.34
91 18 0.27
ACGTcount: A:0.39, C:0.14, G:0.07, T:0.40
Consensus pattern (88 bp):
ATACTTAAACTTTAAAAATGTATAAAAAAGCCCTCAAACTTTTTCAAAAAAGCAATTAAGACACT
ATTGTTTTTTTTTACTCAATTCG
Found at i:82405855 original size:10 final size:9
Alignment explanation
Indices: 82405816--82405868 Score: 56
Period size: 9 Copynumber: 6.0 Consensus size: 9
82405806 ATATGTGACA
*
82405816 AAAAATGAT
1 AAAAATTAT
82405825 AAAAA--AT
1 AAAAATTAT
*
82405832 AAAAATCAAT
1 AAAAAT-TAT
*
82405842 AAAAGTTAT
1 AAAAATTAT
82405851 AAAAATTAT
1 AAAAATTAT
82405860 AAAAATTAT
1 AAAAATTAT
82405869 TAAATTTTAA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
7 7 0.18
9 24 0.63
10 7 0.18
ACGTcount: A:0.68, C:0.02, G:0.04, T:0.26
Consensus pattern (9 bp):
AAAAATTAT
Found at i:82405935 original size:21 final size:20
Alignment explanation
Indices: 82405906--82405971 Score: 55
Period size: 20 Copynumber: 3.2 Consensus size: 20
82405896 CATTTAATTT
*
82405906 TTATTAAAAATTAGAAAAAGA
1 TTATAAAAAATTAGAAAAA-A
*
82405927 TTAT-AAAAA-TCGTAAAAAA
1 TTATAAAAAATTAG-AAAAAA
*
82405946 TTATAAAATATATAGAAAAAA
1 TTATAAAAAAT-TAGAAAAAA
*
82405967 ATATA
1 TTATA
82405972 TAATTTTTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
19 7 0.19
20 14 0.38
21 14 0.38
22 2 0.05
ACGTcount: A:0.64, C:0.02, G:0.06, T:0.29
Consensus pattern (20 bp):
TTATAAAAAATTAGAAAAAA
Found at i:82406234 original size:20 final size:20
Alignment explanation
Indices: 82406211--82406249 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
82406201 TTAAAAGGCC
82406211 TTTTTTATGCA-TTTTATAAT
1 TTTTTTATG-ATTTTTATAAT
82406231 TTTTTTATGATTTTTATAA
1 TTTTTTATGATTTTTATAA
82406250 AATTTTACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.67
Consensus pattern (20 bp):
TTTTTTATGATTTTTATAAT
Found at i:82406255 original size:20 final size:20
Alignment explanation
Indices: 82406212--82406255 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
82406202 TAAAAGGCCT
**
82406212 TTTTTATGCATTTTATAATT
1 TTTTTATGCATTTTATAAAA
82406232 TTTTTATG-ATTTTTATAAAA
1 TTTTTATGCA-TTTTATAAAA
82406252 TTTT
1 TTTT
82406256 ACAATTATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 1 0.05
20 20 0.95
ACGTcount: A:0.27, C:0.02, G:0.05, T:0.66
Consensus pattern (20 bp):
TTTTTATGCATTTTATAAAA
Found at i:82406279 original size:33 final size:33
Alignment explanation
Indices: 82406241--82406307 Score: 84
Period size: 33 Copynumber: 2.0 Consensus size: 33
82406231 TTTTTTATGA
*
82406241 TTTTTA-TAAAATTTTACA-ATTATATATTTCTAT
1 TTTTTAGT-AAATTTTAAATATTATATATTT-TAT
*
82406274 TTTTTAGTAAATTTTAAATATTTTATATTTTAT
1 TTTTTAGTAAATTTTAAATATTATATATTTTAT
82406307 T
1 T
82406308 AAATTTTAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
33 19 0.63
34 11 0.37
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.61
Consensus pattern (33 bp):
TTTTTAGTAAATTTTAAATATTATATATTTTAT
Found at i:82406311 original size:26 final size:27
Alignment explanation
Indices: 82406264--82406324 Score: 81
Period size: 26 Copynumber: 2.3 Consensus size: 27
82406254 TTACAATTAT
*
82406264 ATATTTCTATTTTTTAGTAAATTTTAA-
1 ATATTT-TATATTTTAGTAAATTTTAAC
*
82406291 ATATTTTATATTTTATTAAATTTTAAC
1 ATATTTTATATTTTAGTAAATTTTAAC
82406318 A-ATTTTA
1 ATATTTTA
82406325 ATAATTTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
26 24 0.77
27 7 0.23
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (27 bp):
ATATTTTATATTTTAGTAAATTTTAAC
Found at i:82406633 original size:90 final size:93
Alignment explanation
Indices: 82406477--82406677 Score: 241
Period size: 91 Copynumber: 2.2 Consensus size: 93
82406467 GATACATTTT
* * * *
82406477 TGCAATTGAGTGC--AAAAAAAAAAATAGGGGCTTAATTTCTTTTTAAAAAAATTTTGAGGGTCT
1 TGCAATTGAGTGCAAAAAAAAAAAAACAGGGGCTTAATTACTTTTTAAAAAAAGTTTGAGGGTAT
* * *
82406540 TTTTT-ATGCATTTTGATAGCTCAAGTG
66 TTTTTGATACATTTTGAAAGCTCAAGTA
***
82406567 TGCAATTGAGTGCAAAAAAAAAAAAACAGGGGCTTAATTACTTTTT-TTTAAAGTTTGAGGG-AT
1 TGCAATTGAGTGCAAAAAAAAAAAAACAGGGGCTTAATTACTTTTTAAAAAAAGTTTGAGGGTAT
* *
82406630 TTTTTGATACATTTTGAAAGTTTAAGTA
66 TTTTTGATACATTTTGAAAGCTCAAGTA
**
82406658 CCCAATTGAGTGCAAAAAAA
1 TGCAATTGAGTGCAAAAAAA
82406678 TATATATTAC
Statistics
Matches: 94, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
90 19 0.20
91 46 0.49
92 29 0.31
ACGTcount: A:0.37, C:0.09, G:0.18, T:0.35
Consensus pattern (93 bp):
TGCAATTGAGTGCAAAAAAAAAAAAACAGGGGCTTAATTACTTTTTAAAAAAAGTTTGAGGGTAT
TTTTTGATACATTTTGAAAGCTCAAGTA
Found at i:82407053 original size:6 final size:6
Alignment explanation
Indices: 82407042--82407072 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
82407032 TCAATAATAA
82407042 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT A
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT A
82407073 AAAATGCTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (6 bp):
ATTTTT
Found at i:82407184 original size:13 final size:13
Alignment explanation
Indices: 82407166--82407199 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
82407156 TAATCATATA
82407166 ATAATTTTTTAAT
1 ATAATTTTTTAAT
*
82407179 ATAATTTTTTATT
1 ATAATTTTTTAAT
*
82407192 TTAATTTT
1 ATAATTTT
82407200 ATTTTAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
ATAATTTTTTAAT
Found at i:82407222 original size:14 final size:14
Alignment explanation
Indices: 82407205--82407238 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
82407195 ATTTTATTTT
82407205 AATAATAAATTTAA
1 AATAATAAATTTAA
*
82407219 AATAAT-AATTTTA
1 AATAATAAATTTAA
82407232 AATAATA
1 AATAATA
82407239 TTCATTATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
AATAATAAATTTAA
Found at i:82407289 original size:15 final size:15
Alignment explanation
Indices: 82407265--82407299 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
82407255 ATTCAATATT
*
82407265 AATATTTTAATAATA
1 AATATATTAATAATA
*
82407280 AATATATTAATAGTA
1 AATATATTAATAATA
82407295 AATAT
1 AATAT
82407300 TTTGTAGTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (15 bp):
AATATATTAATAATA
Found at i:82407708 original size:25 final size:28
Alignment explanation
Indices: 82407655--82407708 Score: 78
Period size: 25 Copynumber: 2.0 Consensus size: 28
82407645 TATAAAGACT
82407655 TATGACATATTTTAACCTAGTATAAAAA
1 TATGACATATTTTAACCTAGTATAAAAA
*
82407683 TATGA-ATATTTTAA-TTA-TATAAAAA
1 TATGACATATTTTAACCTAGTATAAAAA
82407708 T
1 T
82407709 GAGCATTTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
25 9 0.36
26 2 0.08
27 9 0.36
28 5 0.20
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.41
Consensus pattern (28 bp):
TATGACATATTTTAACCTAGTATAAAAA
Found at i:82408146 original size:14 final size:14
Alignment explanation
Indices: 82408124--82408162 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
82408114 TCAGAAAAAT
82408124 AAATCATTTTCTAA
1 AAATCATTTTCTAA
* * *
82408138 AAATTATTTTTTAG
1 AAATCATTTTCTAA
82408152 AAATCATTTTC
1 AAATCATTTTC
82408163 AATAAAACAA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.38, C:0.10, G:0.03, T:0.49
Consensus pattern (14 bp):
AAATCATTTTCTAA
Found at i:82412756 original size:9 final size:9
Alignment explanation
Indices: 82412744--82412817 Score: 71
Period size: 9 Copynumber: 8.2 Consensus size: 9
82412734 ATTCGGTCGG
82412744 TTAACCGAA
1 TTAACCGAA
*
82412753 TTAACCAAA
1 TTAACCGAA
*
82412762 TTACCCGAA
1 TTAACCGAA
*
82412771 TTAACCGGA
1 TTAACCGAA
82412780 TT-ACTCGAA
1 TTAAC-CGAA
82412789 TT-ACCAGAA
1 TTAACC-GAA
* *
82412798 TTACCCTAA
1 TTAACCGAA
82412807 TTAACCGAA
1 TTAACCGAA
82412816 TT
1 TT
82412818 GAATCACTAT
Statistics
Matches: 52, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
8 3 0.06
9 47 0.90
10 2 0.04
ACGTcount: A:0.39, C:0.24, G:0.09, T:0.27
Consensus pattern (9 bp):
TTAACCGAA
Found at i:82412769 original size:18 final size:18
Alignment explanation
Indices: 82412748--82412817 Score: 79
Period size: 18 Copynumber: 3.9 Consensus size: 18
82412738 GGTCGGTTAA
82412748 CCGAATTAACCAAATTAC
1 CCGAATTAACCAAATTAC
**
82412766 CCGAATTAACCGGATTAC
1 CCGAATTAACCAAATTAC
*
82412784 TCGAATT-ACCAGAATTAC
1 CCGAATTAACCA-AATTAC
* *
82412802 CCTAATTAACCGAATT
1 CCGAATTAACCAAATT
82412818 GAATCACTAT
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
17 3 0.07
18 36 0.86
19 3 0.07
ACGTcount: A:0.39, C:0.26, G:0.10, T:0.26
Consensus pattern (18 bp):
CCGAATTAACCAAATTAC
Found at i:82412774 original size:27 final size:27
Alignment explanation
Indices: 82412744--82412817 Score: 87
Period size: 27 Copynumber: 2.7 Consensus size: 27
82412734 ATTCGGTCGG
* *
82412744 TTAACCGAATTAACCAAATTACCCGAA
1 TTAACCGAATTAACCGAATTACCAGAA
*
82412771 TTAACCGGATT-ACTCGAATTACCAGAA
1 TTAACCGAATTAAC-CGAATTACCAGAA
* *
82412798 TTACCCTAATTAACCGAATT
1 TTAACCGAATTAACCGAATT
82412818 GAATCACTAT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
26 2 0.05
27 35 0.90
28 2 0.05
ACGTcount: A:0.39, C:0.24, G:0.09, T:0.27
Consensus pattern (27 bp):
TTAACCGAATTAACCGAATTACCAGAA
Found at i:82423364 original size:243 final size:234
Alignment explanation
Indices: 82422553--82423646 Score: 962
Period size: 233 Copynumber: 4.6 Consensus size: 234
82422543 AATATCATGT
* * *
82422553 TATAATAGTAGTACATTATATATTAATTATTATCA-TATATTACTGTTTATTATTATACTGGTTG
1 TATAATAGTAGTACATTATATATT-ATTATTAT-ATTTTATTATTGTTTATTATTATACTAGTTG
* * ** * * * *
82422617 AAATATGCTCTAAGTCCCTAGACTTTTCATACATTTGAAAGTTAATCCTTCTACCATAATGTCAT
64 AAATATGCTATAAGTCCCTATACTTTTCATACATTTGAAAGTTAGCCCTCCTACTATATTAT-AT
* * * * *
82422682 -AT-C-ATACCATATGGCATATAATAT-AT-TAATAGC-TTATATATATACATCTATGAT-TAAA
128 AATGCTATATCATAT--CATATTATATCATATCATAGCTTTATATATATA-A-CAATAATGTAAA
* * * *
82422740 CAT-TATAATATCATGCAATACTATACCTTTTATTATAAT-CTA-TAA
189 -ATATATAATATCATGTAATACTATATC-TTTATTATAATAATAGTTA
* * *
82422785 TATAATAGTAGTACATTTTATATTAATTATTA-A--TTATTAATGTTTATTATTATACTGGTTGA
1 TATAATAGTAGTACATTATATATT-ATTATTATATTTTATTATTGTTTATTATTATACTAGTTGA
* * *
82422847 AATATGTTCTAAGTCCCTATACTTTTCATATATTTGAAAGTTAGCCCTCCTACTATATTATATAA
65 AATATGCTATAAGTCCCTATACTTTTCATACATTTGAAAGTTAGCCCTCCTACTATATTATATAA
* * * ** * *
82422912 TGTTATATCATATCA-AGTAATATCTAATAT-ATAACAGTTTATATATGCATCAATGAT-T-AAA
130 TGCTATATCATATCATA-TTATATC--ATATCATAGC--TTTATATATATAACAATAATGTAAAA
82422973 TATTATAATATCATGTAATACTGTATAT-TTTATTATAATAATAGTTATA
190 TA-TATAATATCATGTAATAC--TATATCTTTATTATAATAATAG-T-TA
* * * * *
82423022 TATAATAGTAGTAAATTATATATTAATTAATACTA-TATATTATTGTTTGTTATTATACTGGTTG
1 TATAATAGTAGTACATTATATATT-ATTATTA-TATTTTATTATTGTTTATTATTATACTAGTTG
* * * * * * **
82423086 AAATCTGCTCTAAGTCACTATA-TTTATCGTACATTTGAAAGTTAACTCTCCCGCTATATTATAT
64 AAATATGCTATAAGTCCCTATACTTT-TCATACATTTGAAAGTTAGCCCTCCTACTATATTATAT
*
82423150 AATGCTATATCATATTATATTATATCATATCATAGCTCTCCTACTATTATATAACAATAATGTAA
128 AATGCTATATCATATCATATTATATCATATCATAGCT-T--TA-TA-TATATAACAATAATGTAA
* * *
82423215 AATATAAAATAAT-ATGTAATGTACTACTATCTATAATATAATAATAGTTA
188 AATATATAAT-ATCATGTAA--TACTA-TATCTTTATTATAATAATAGTTA
*
82423265 TATAATAGTAGTACATTACATATTATT-TTATATTTTACATTATTGTTTATTATTATACTAGTTG
1 TATAATAGTAGTACATTATATATTATTATTATATTTT--ATTATTGTTTATTATTATACTAGTTG
* *
82423329 AAATATGCTATAAGTCCCTATACTTTTCATACATTTGAAAGTTAGCCTTCCTACTATATTATATG
64 AAATATGCTATAAGTCCCTATACTTTTCATACATTTGAAAGTTAGCCCTCCTACTATATTATATA
* *
82423394 ATGCTATATCATATC--A-TATAT--TA-C-T-GGTTTATATATATATGC-ATAAATGATTAAAC
129 ATGCTATATCATATCATATTATATCATATCATAGCTTTATATATATA-ACAAT-AATG--TAAA-
*
82423450 AT-TATAATATCATGTAATACTATATCTTTTATTATAATATATA-ATA
189 ATATATAATATCATGTAATACTATATC-TTTATTATAATA-ATAGTTA
*
82423496 TAATAATAGTAGTACATTATATATTACTTATTAGTATATTATTATTGTTTATTATTATACTAGTT
1 T-ATAATAGTAGTACATTATATATTA-TTATTA-TATTTTATTATTGTTTATTATTATACTAGTT
* * * * * *
82423561 GAAATATACTCA-AAGTTCTTATACTTTTCCTACATTTAAAAGTTAGCCCTCCTACTATATTTTA
63 GAAATATGCT-ATAAGTCCCTATACTTTTCATACATTTGAAAGTTAGCCCTCCTACTATATTATA
*
82423625 TAATGCTATATCAAATCATATT
127 TAATGCTATATCATATCATATT
82423647 TTTAGTGATA
Statistics
Matches: 722, Mismatches: 83, Indels: 110
0.79 0.09 0.12
Matches are distributed among these distances:
228 3 0.00
229 89 0.12
230 13 0.02
231 35 0.05
232 69 0.10
233 148 0.20
234 9 0.01
235 21 0.03
236 3 0.00
237 32 0.04
238 7 0.01
239 8 0.01
240 106 0.15
241 8 0.01
242 13 0.02
243 127 0.18
244 14 0.02
245 17 0.02
ACGTcount: A:0.37, C:0.12, G:0.07, T:0.44
Consensus pattern (234 bp):
TATAATAGTAGTACATTATATATTATTATTATATTTTATTATTGTTTATTATTATACTAGTTGAA
ATATGCTATAAGTCCCTATACTTTTCATACATTTGAAAGTTAGCCCTCCTACTATATTATATAAT
GCTATATCATATCATATTATATCATATCATAGCTTTATATATATAACAATAATGTAAAATATATA
ATATCATGTAATACTATATCTTTATTATAATAATAGTTA
Found at i:82423550 original size:13 final size:14
Alignment explanation
Indices: 82423511--82423553 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
82423501 ATAGTAGTAC
82423511 ATTA-TATATTACTT
1 ATTAGTATATTA-TT
82423525 ATTAGTATATTATT
1 ATTAGTATATTATT
*
82423539 ATT-GTTTATTATT
1 ATTAGTATATTATT
82423552 AT
1 AT
82423554 ACTAGTTGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 11 0.41
14 9 0.33
15 7 0.26
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.60
Consensus pattern (14 bp):
ATTAGTATATTATT
Found at i:82423597 original size:476 final size:479
Alignment explanation
Indices: 82422784--82423646 Score: 1194
Period size: 476 Copynumber: 1.8 Consensus size: 479
82422774 ATAATCTATA
** *
82422784 ATATAATAGTAGTACATTTTATATTAATTATTAATTATTAATGTTTATTATTATACTGGTTGAAA
1 ATATAATAGTAGTACATTACATATTAATTATTAATTATTAATGTTTATTATTATACTAGTTGAAA
* * *
82422849 TATGTTCTAAGTCCCTATACTTTTCATATATTTGAAAGTTAGCCCTCCTACTATATTATATAATG
66 TATGCTATAAGTCCCTATACTTTTCATACATTTGAAAGTTAGCCCTCCTACTATATTATATAATG
* * * *
82422914 TTATATCATATCAAGTAATATCTAATATATAACAGTTTATATATGCATCAATGATTAAATATTAT
131 CTATATCATATCAAGTAATATCTAATATAT-ACAGTATATATATGCATAAATGATTAAACATTAT
* *
82422979 AATATCATGTAATACTGTATATTTTATTATAATAATAGTTATATATAATAGTAGTAAATTATATA
195 AATATCATGTAATACTATATATTTTATTATAATAATAGATATATATAATAGTAGTAAATTATATA
* * * * *
82423044 TTAATTAATACTATATATTATTGTTTGTTATTATACTGGTTGAAATCTGCTCTAAGTCACTATAT
260 TTAATTAATACTATATATTATTGTTTATTATTATACTAGTTGAAATATACTCAAAGTCACTATAT
* * * * * *
82423109 TTATCGTACATTTGAAAGTTAACTCTCCCGCTATATTATATAATGCTATATCATATTATATTATA
325 TTATCCTACATTTAAAAGTTAACCCTCCCACTATATTATATAATGCTATATCAAATCATATTATA
82423174 TCATATCATAGCTCTCCTACTATTATATAACAATAATGTAAAATATAAAATAATATGTAATGTAC
390 TCATATCATAGCTCTCCTACTATTATATAACAATAATGTAAAATATAAAATAATATGTAATGTAC
82423239 TACTATCTATAATATAATAATAGTT
455 TACTATCTATAATATAATAATAGTT
*
82423264 ATATAATAGTAGTACATTACATATT-ATT-TTATATTTTACATTATTGTTTATTATTATACTAGT
1 ATATAATAGTAGTACATTACATATTAATTATTA-A--TT--ATTAATGTTTATTATTATACTAGT
*
82423327 TGAAATATGCTATAAGTCCCTATACTTTTCATACATTTGAAAGTTAGCCTTCCTACTATATTATA
61 TGAAATATGCTATAAGTCCCTATACTTTTCATACATTTGAAAGTTAGCCCTCCTACTATATTATA
* * * *
82423392 TGATGCTATATCATATC-A-T-ATAT-TACTGGT-T-TA-TATATATATGCATAAATGATTAAAC
126 TAATGCTATATCATATCAAGTAATATCTAAT-ATATACAGTATATATATGCATAAATGATTAAAC
* *
82423450 ATTATAATATCATGTAATACTATATCTTTTATTATAATATATA-ATATA-ATAATAGTAGTACAT
190 ATTATAATATCATGTAATACTATATATTTTATTATAATA-ATAGATATATATAATAGTAGTAAAT
* * *
82423513 TATATATTACTTATTAGTATATTATTATTGTTTATTATTATACTAGTTGAAATATACTCAAAGTT
254 TATATATTAATTAATACTATA-TATTATTGTTTATTATTATACTAGTTGAAATATACTCAAAG-T
* * * *
82423578 C-TTATACTTT-TCCTACATTTAAAAGTTAGCCCTCCTACTATATTTTATAATGCTATATCAAAT
317 CACTATA-TTTATCCTACATTTAAAAGTTAACCCTCCCACTATATTATATAATGCTATATCAAAT
82423641 CATATT
381 CATATT
82423647 TTTAGTGATA
Statistics
Matches: 335, Mismatches: 38, Indels: 24
0.84 0.10 0.06
Matches are distributed among these distances:
475 32 0.10
476 153 0.46
477 9 0.03
478 3 0.01
479 8 0.02
480 28 0.08
481 3 0.01
482 1 0.00
483 98 0.29
ACGTcount: A:0.37, C:0.11, G:0.08, T:0.44
Consensus pattern (479 bp):
ATATAATAGTAGTACATTACATATTAATTATTAATTATTAATGTTTATTATTATACTAGTTGAAA
TATGCTATAAGTCCCTATACTTTTCATACATTTGAAAGTTAGCCCTCCTACTATATTATATAATG
CTATATCATATCAAGTAATATCTAATATATACAGTATATATATGCATAAATGATTAAACATTATA
ATATCATGTAATACTATATATTTTATTATAATAATAGATATATATAATAGTAGTAAATTATATAT
TAATTAATACTATATATTATTGTTTATTATTATACTAGTTGAAATATACTCAAAGTCACTATATT
TATCCTACATTTAAAAGTTAACCCTCCCACTATATTATATAATGCTATATCAAATCATATTATAT
CATATCATAGCTCTCCTACTATTATATAACAATAATGTAAAATATAAAATAATATGTAATGTACT
ACTATCTATAATATAATAATAGTT
Found at i:82427704 original size:18 final size:20
Alignment explanation
Indices: 82427660--82427701 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
82427650 TGATTTATTG
82427660 ATTATTTTTATTTATTTAAAA
1 ATTATTTTTA-TTATTTAAAA
82427681 ATTATTTTTA-TATTTAAAA
1 ATTATTTTTATTATTTAAAA
82427700 AT
1 AT
82427702 ATTGAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 11 0.52
21 10 0.48
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
ATTATTTTTATTATTTAAAA
Found at i:82429050 original size:31 final size:31
Alignment explanation
Indices: 82429012--82429077 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 31
82429002 TTTAAAAGTC
* *
82429012 TAGTGACTTAAATAAAAGT-TTTCGAATAGTT
1 TAGTGACTTAAATAAAA-TCTTTCAAATAATT
*
82429043 TAGTGACTTAAATGAAATCTTTCAAATAATT
1 TAGTGACTTAAATAAAATCTTTCAAATAATT
82429074 TAGT
1 TAGT
82429078 ATCATTTTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
30 1 0.03
31 30 0.97
ACGTcount: A:0.39, C:0.08, G:0.14, T:0.39
Consensus pattern (31 bp):
TAGTGACTTAAATAAAATCTTTCAAATAATT
Found at i:82430982 original size:11 final size:10
Alignment explanation
Indices: 82430957--82431017 Score: 54
Period size: 10 Copynumber: 6.1 Consensus size: 10
82430947 ACCAATAAAA
82430957 TAAA-TGAGC
1 TAAATTGAGC
*
82430966 TGAATTGTAGC
1 TAAATTG-AGC
82430977 TAAATTGAGC
1 TAAATTGAGC
**
82430987 TCGATTGAGC
1 TAAATTGAGC
82430997 TGAAA-TGAGC
1 T-AAATTGAGC
*
82431007 TCAATTGAGC
1 TAAATTGAGC
82431017 T
1 T
82431018 GGTCGGAGTT
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
9 5 0.12
10 26 0.63
11 10 0.24
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.30
Consensus pattern (10 bp):
TAAATTGAGC
Found at i:82431018 original size:20 final size:20
Alignment explanation
Indices: 82430958--82431018 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
82430948 CCAATAAAAT
*
82430958 AAATGAGCTGAATTGTAGCT-
1 AAATGAGCTCAATTG-AGCTG
*
82430978 AAATTGAGCTCGATTGAGCTG
1 AAA-TGAGCTCAATTGAGCTG
82430999 AAATGAGCTCAATTGAGCTG
1 AAATGAGCTCAATTGAGCTG
82431019 GTCGGAGTTG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 23 0.64
21 13 0.36
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (20 bp):
AAATGAGCTCAATTGAGCTG
Found at i:82434457 original size:12 final size:12
Alignment explanation
Indices: 82434421--82434457 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
82434411 CAGATAAAGG
82434421 TAGTGGAATCCA
1 TAGTGGAATCCA
* *
82434433 CAGTGGAACCCA
1 TAGTGGAATCCA
82434445 TAGTGGAATCCA
1 TAGTGGAATCCA
82434457 T
1 T
82434458 GGCTAAATAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.22
Consensus pattern (12 bp):
TAGTGGAATCCA
Found at i:82443022 original size:12 final size:12
Alignment explanation
Indices: 82443005--82443032 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
82442995 ATAATTATGG
82443005 AGTTAGTATAAA
1 AGTTAGTATAAA
82443017 AGTTAGTATAAA
1 AGTTAGTATAAA
82443029 AGTT
1 AGTT
82443033 TATTAAAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.18, T:0.36
Consensus pattern (12 bp):
AGTTAGTATAAA
Found at i:82443235 original size:16 final size:16
Alignment explanation
Indices: 82443214--82443254 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
82443204 GGTTAAATGT
82443214 GATTAAGATTTAATTA
1 GATTAAGATTTAATTA
*
82443230 GATTAAGGTTTAATTA
1 GATTAAGATTTAATTA
82443246 -ATTAA-ATTT
1 GATTAAGATTT
82443255 GGTTTAATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 3 0.13
15 5 0.22
16 15 0.65
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.46
Consensus pattern (16 bp):
GATTAAGATTTAATTA
Found at i:82447001 original size:37 final size:37
Alignment explanation
Indices: 82446951--82447062 Score: 188
Period size: 37 Copynumber: 3.0 Consensus size: 37
82446941 TTTAACCGAA
*
82446951 TTGAATCACTACATAATTAAAAAAATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
82446988 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
* * *
82447025 TTGAATGAGTATATAATTAAAAACATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
82447062 T
1 T
82447063 AAAATTAACA
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 71 1.00
ACGTcount: A:0.46, C:0.12, G:0.07, T:0.34
Consensus pattern (37 bp):
TTGAATCACTACATAATTAAAAACATTACATAAGTCT
Found at i:82447019 original size:17 final size:17
Alignment explanation
Indices: 82446960--82447020 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
82446950 ATTGAATCAC
*
82446960 TACATAATTAAAAAAAT
1 TACATAATTAAAAACAT
** * *
82446977 TACATAAGTCTTTGAATCAC
1 TACATAA---TTAAAAACAT
82446997 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
82447014 TACATAA
1 TACATAA
82447021 GTCTTTGAAT
Statistics
Matches: 32, Mismatches: 9, Indels: 6
0.68 0.19 0.13
Matches are distributed among these distances:
17 20 0.62
20 12 0.38
ACGTcount: A:0.52, C:0.13, G:0.03, T:0.31
Consensus pattern (17 bp):
TACATAATTAAAAACAT
Found at i:82447066 original size:20 final size:20
Alignment explanation
Indices: 82446967--82447066 Score: 59
Period size: 20 Copynumber: 5.3 Consensus size: 20
82446957 CACTACATAA
*
82446967 TTAAAAAAATTACATAAGTC
1 TTAAAAACATTACATAAGTC
** * *
82446987 TTTGAATCACTACATAA---
1 TTAAAAACATTACATAAGTC
82447004 TTAAAAACATTACATAAGTC
1 TTAAAAACATTACATAAGTC
** ** * *
82447024 TTTGAATGAGTATATAA---
1 TTAAAAACATTACATAAGTC
82447041 TTAAAAACATTACATAAGTC
1 TTAAAAACATTACATAAGTC
82447061 TTAAAA
1 TTAAAA
82447067 TTAACACATA
Statistics
Matches: 53, Mismatches: 21, Indels: 12
0.62 0.24 0.14
Matches are distributed among these distances:
17 24 0.45
20 29 0.55
ACGTcount: A:0.49, C:0.11, G:0.07, T:0.33
Consensus pattern (20 bp):
TTAAAAACATTACATAAGTC
Done.