Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 270 of 313
Found at i:82447078 original size:37 final size:37
Alignment explanation
Indices: 82446961--82447079 Score: 150
Period size: 37 Copynumber: 3.2 Consensus size: 37
82446951 TTGAATCACT
* *
82446961 ACATAATTAAAAAAATTACATAAGTCTTTGAA-TCAC
1 ACATAATTAAAAACATTACATAAGTCTTTGAATTAAC
* **
82446997 TACATAATTAAAAACATTACATAAGTCTTTGAATGAGT
1 -ACATAATTAAAAACATTACATAAGTCTTTGAATTAAC
* **
82447035 ATATAATTAAAAACATTACATAAGTCTTAAAATTAAC
1 ACATAATTAAAAACATTACATAAGTCTTTGAATTAAC
82447072 ACATAATT
1 ACATAATT
82447080 GAAATGTAAG
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.50, C:0.12, G:0.06, T:0.33
Consensus pattern (37 bp):
ACATAATTAAAAACATTACATAAGTCTTTGAATTAAC
Found at i:82450795 original size:25 final size:25
Alignment explanation
Indices: 82450767--82450835 Score: 69
Period size: 19 Copynumber: 3.0 Consensus size: 25
82450757 GTAAATGGTA
82450767 ATTGGGTTTGGGTAGACTTTAGTTT
1 ATTGGGTTTGGGTAGACTTTAGTTT
* * *
82450792 ATTGGG-TT-GGTA-A--AT-GATA
1 ATTGGGTTTGGGTAGACTTTAGTTT
82450811 ATTGGGTTTGGGTAGACTTTAGTTT
1 ATTGGGTTTGGGTAGACTTTAGTTT
82450836 TAGTTTTATT
Statistics
Matches: 32, Mismatches: 6, Indels: 12
0.64 0.12 0.24
Matches are distributed among these distances:
19 8 0.25
20 3 0.09
21 4 0.12
22 2 0.06
23 4 0.12
24 3 0.09
25 8 0.25
ACGTcount: A:0.20, C:0.03, G:0.32, T:0.45
Consensus pattern (25 bp):
ATTGGGTTTGGGTAGACTTTAGTTT
Found at i:82450863 original size:50 final size:45
Alignment explanation
Indices: 82450734--82450837 Score: 192
Period size: 44 Copynumber: 2.3 Consensus size: 45
82450724 ACTTTATTTT
*
82450734 TAGACTTTAGTTTTATTGGGTTGGTAAATGGTAATTGGGTTTGGG
1 TAGACTTTAGTTTTATTGGGTTGGTAAATGATAATTGGGTTTGGG
82450779 TAGACTTTAG-TTTATTGGGTTGGTAAATGATAATTGGGTTTGGG
1 TAGACTTTAGTTTTATTGGGTTGGTAAATGATAATTGGGTTTGGG
82450823 TAGACTTTAGTTTTA
1 TAGACTTTAGTTTTA
82450838 GTTTTATTGG
Statistics
Matches: 57, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
44 43 0.75
45 14 0.25
ACGTcount: A:0.22, C:0.03, G:0.30, T:0.45
Consensus pattern (45 bp):
TAGACTTTAGTTTTATTGGGTTGGTAAATGATAATTGGGTTTGGG
Found at i:82452467 original size:12 final size:12
Alignment explanation
Indices: 82452450--82452487 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
82452440 ATATTAGAAC
82452450 TAACAATAATAA
1 TAACAATAATAA
*
82452462 TAACAATAAAAA
1 TAACAATAATAA
*
82452474 TAA-AATAGTAA
1 TAACAATAATAA
82452485 TAA
1 TAA
82452488 TAAATAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
11 9 0.39
12 14 0.61
ACGTcount: A:0.68, C:0.05, G:0.03, T:0.24
Consensus pattern (12 bp):
TAACAATAATAA
Found at i:82461591 original size:20 final size:20
Alignment explanation
Indices: 82461566--82461638 Score: 69
Period size: 20 Copynumber: 3.6 Consensus size: 20
82461556 TATGGGATTA
82461566 CACTTCGGTGCCTCTGTCTG
1 CACTTCGGTGCCTCTGTCTG
* *
82461586 CACTTCAGTGCCTCCGAT-TG
1 CACTTCGGTGCCTCTG-TCTG
*
82461606 CACATT-TGTGCCTCTGTCTG
1 CAC-TTCGGTGCCTCTGTCTG
* *
82461626 TACTTTGGTGCCT
1 CACTTCGGTGCCT
82461639 TTGTTATGCA
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
19 3 0.07
20 37 0.86
21 3 0.07
ACGTcount: A:0.10, C:0.32, G:0.22, T:0.37
Consensus pattern (20 bp):
CACTTCGGTGCCTCTGTCTG
Found at i:82464216 original size:69 final size:69
Alignment explanation
Indices: 82464085--82464221 Score: 161
Period size: 69 Copynumber: 2.0 Consensus size: 69
82464075 AAACGATGAA
* * * *
82464085 GAGGATATATATTGTGTAGCATTCGATAGGGCAGTTATAATGCTAATCAGATAGATAAAACACTG
1 GAGGAGATATATTGTGTAGCATTAGATAGGGCAATTATAATGCTAATCAGACAGATAAAACACTG
82464150 TGAG
66 TGAG
* * * * *
82464154 GAGGAGATATATTGTGTAGCCTCTAG-TAGGGCAATTATATTGCTAA-CTGGACAGGTAGAACAC
1 GAGGAGATATATTGTGTAGCAT-TAGATAGGGCAATTATAATGCTAATC-AGACAGATAAAACAC
82464217 TGTGA
64 TGTGA
82464222 AAAGGATGGT
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
68 1 0.02
69 54 0.95
70 2 0.04
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.28
Consensus pattern (69 bp):
GAGGAGATATATTGTGTAGCATTAGATAGGGCAATTATAATGCTAATCAGACAGATAAAACACTG
TGAG
Found at i:82468796 original size:16 final size:16
Alignment explanation
Indices: 82468775--82468809 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
82468765 TATAATAGTA
82468775 ATATTAGTAATAAATG
1 ATATTAGTAATAAATG
82468791 ATATTAGTAATAAATG
1 ATATTAGTAATAAATG
82468807 ATA
1 ATA
82468810 GCATGAAGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.51, C:0.00, G:0.11, T:0.37
Consensus pattern (16 bp):
ATATTAGTAATAAATG
Found at i:82468854 original size:90 final size:90
Alignment explanation
Indices: 82468701--82469043 Score: 686
Period size: 90 Copynumber: 3.8 Consensus size: 90
82468691 TTTTATAGTA
82468701 ATATTAGTAATAAATGATAGCATGAAGTTGATAGATATGTTTTGAGAACATGAAAGAATTGGGTT
1 ATATTAGTAATAAATGATAGCATGAAGTTGATAGATATGTTTTGAGAACATGAAAGAATTGGGTT
82468766 ATAATAGTAATATTAGTAATAAATG
66 ATAATAGTAATATTAGTAATAAATG
82468791 ATATTAGTAATAAATGATAGCATGAAGTTGATAGATATGTTTTGAGAACATGAAAGAATTGGGTT
1 ATATTAGTAATAAATGATAGCATGAAGTTGATAGATATGTTTTGAGAACATGAAAGAATTGGGTT
82468856 ATAATAGTAATATTAGTAATAAATG
66 ATAATAGTAATATTAGTAATAAATG
82468881 ATATTAGTAATAAATGATAGCATGAAGTTGATAGATATGTTTTGAGAACATGAAAGAATTGGGTT
1 ATATTAGTAATAAATGATAGCATGAAGTTGATAGATATGTTTTGAGAACATGAAAGAATTGGGTT
82468946 ATAATAGTAATATTAGTAATAAATG
66 ATAATAGTAATATTAGTAATAAATG
82468971 ATATTAGTAATAAATGATAGCATGAAGTTGATAGATATGTTTTGAGAACATGAAAGAATTGGGTT
1 ATATTAGTAATAAATGATAGCATGAAGTTGATAGATATGTTTTGAGAACATGAAAGAATTGGGTT
82469036 ATAATAGT
66 ATAATAGT
82469044 TAAAAAGATG
Statistics
Matches: 253, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
90 253 1.00
ACGTcount: A:0.43, C:0.02, G:0.20, T:0.34
Consensus pattern (90 bp):
ATATTAGTAATAAATGATAGCATGAAGTTGATAGATATGTTTTGAGAACATGAAAGAATTGGGTT
ATAATAGTAATATTAGTAATAAATG
Found at i:82468886 original size:16 final size:16
Alignment explanation
Indices: 82468865--82468899 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
82468855 TATAATAGTA
82468865 ATATTAGTAATAAATG
1 ATATTAGTAATAAATG
82468881 ATATTAGTAATAAATG
1 ATATTAGTAATAAATG
82468897 ATA
1 ATA
82468900 GCATGAAGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.51, C:0.00, G:0.11, T:0.37
Consensus pattern (16 bp):
ATATTAGTAATAAATG
Found at i:82468976 original size:16 final size:16
Alignment explanation
Indices: 82468955--82468989 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
82468945 TATAATAGTA
82468955 ATATTAGTAATAAATG
1 ATATTAGTAATAAATG
82468971 ATATTAGTAATAAATG
1 ATATTAGTAATAAATG
82468987 ATA
1 ATA
82468990 GCATGAAGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.51, C:0.00, G:0.11, T:0.37
Consensus pattern (16 bp):
ATATTAGTAATAAATG
Found at i:82480519 original size:3 final size:3
Alignment explanation
Indices: 82480511--82480544 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
82480501 TAAGGATGGA
82480511 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
82480545 GCATTCTTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:82481251 original size:15 final size:15
Alignment explanation
Indices: 82481231--82481259 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
82481221 TTATGTTATT
82481231 AATCATAAACATATA
1 AATCATAAACATATA
82481246 AATCATAAACATAT
1 AATCATAAACATAT
82481260 TCTTAAGCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.59, C:0.14, G:0.00, T:0.28
Consensus pattern (15 bp):
AATCATAAACATATA
Found at i:82482359 original size:14 final size:14
Alignment explanation
Indices: 82482342--82482534 Score: 59
Period size: 14 Copynumber: 13.3 Consensus size: 14
82482332 TGGTTTGAGA
82482342 TTTAAGGTTTAGGG
1 TTTAAGGTTTAGGG
*
82482356 TTTACA-GTGTA-GG
1 TTTA-AGGTTTAGGG
**
82482369 TTTGTGGTTTAGGG
1 TTTAAGGTTTAGGG
* *
82482383 TTTTAGGTTTAGAG
1 TTTAAGGTTTAGGG
* * *
82482397 ATTAATGTTTAAGG
1 TTTAAGGTTTAGGG
* *
82482411 TTTAGGGGTTATGGG
1 TTTAAGGTTTA-GGG
* * *
82482426 TTTAGGGATTAGTG
1 TTTAAGGTTTAGGG
* ***
82482440 TTTAAAGTTTCTAG
1 TTTAAGGTTTAGGG
* * *
82482454 TTTAGGGGTTTTGGA
1 TTTA-AGGTTTAGGG
*
82482469 TTTAAGGGGTTTTGAGTG
1 TTTAA--GG-TTT-AGGG
* *
82482487 TTTAGGGTTTATGG
1 TTTAAGGTTTAGGG
*
82482501 TTT-AGGATTTTAGGA
1 TTTAAGG--TTTAGGG
82482516 TTTAAGGTTTAGGGG
1 TTTAAGGTTTA-GGG
82482531 TTTA
1 TTTA
82482535 GAGTTTTTTT
Statistics
Matches: 124, Mismatches: 42, Indels: 25
0.65 0.22 0.13
Matches are distributed among these distances:
13 11 0.09
14 60 0.48
15 38 0.31
16 7 0.06
17 3 0.02
18 5 0.04
ACGTcount: A:0.20, C:0.01, G:0.33, T:0.46
Consensus pattern (14 bp):
TTTAAGGTTTAGGG
Found at i:82482384 original size:7 final size:7
Alignment explanation
Indices: 82482374--82482540 Score: 57
Period size: 7 Copynumber: 22.7 Consensus size: 7
82482364 GTAGGTTTGT
82482374 GGTTTAG
1 GGTTTAG
82482381 GGTTTTA-
1 GG-TTTAG
82482388 GGTTTAG
1 GGTTTAG
* * *
82482395 AGATTAA
1 GGTTTAG
* *
82482402 TGTTTAA
1 GGTTTAG
82482409 GGTTTAG
1 GGTTTAG
*
82482416 GGGTTATG
1 GGTTTA-G
82482424 GGTTTAG
1 GGTTTAG
*
82482431 GGATTAG
1 GGTTTAG
* *
82482438 TGTTTAA
1 GGTTTAG
* **
82482445 AGTTTCT
1 GGTTTAG
*
82482452 AGTTTAGG
1 GGTTTA-G
*
82482460 GGTTTTG
1 GGTTTAG
*
82482467 GATTTAAGG
1 GGTTT-A-G
82482476 GGTTTTGAG
1 GG-TTT-AG
*
82482485 TGTTTAG
1 GGTTTAG
*
82482492 GGTTTAT
1 GGTTTAG
82482499 GGTTTAG
1 GGTTTAG
*
82482506 GATTTTAG
1 G-GTTTAG
* *
82482514 GATTTAA
1 GGTTTAG
82482521 GGTTTAGG
1 GGTTTA-G
82482529 GGTTTAG
1 GGTTTAG
*
82482536 AGTTT
1 GGTTT
82482541 TTTTGGTCTA
Statistics
Matches: 117, Mismatches: 34, Indels: 18
0.69 0.20 0.11
Matches are distributed among these distances:
6 4 0.03
7 76 0.65
8 29 0.25
9 4 0.03
10 4 0.03
ACGTcount: A:0.20, C:0.01, G:0.34, T:0.46
Consensus pattern (7 bp):
GGTTTAG
Found at i:82482428 original size:36 final size:35
Alignment explanation
Indices: 82482374--82482449 Score: 98
Period size: 36 Copynumber: 2.1 Consensus size: 35
82482364 GTAGGTTTGT
*
82482374 GGTTTAGGGTTTTAGGTTTAGAGATTAATGTTTAA
1 GGTTTAGGGTTATAGGTTTAGAGATTAATGTTTAA
* * *
82482409 GGTTTAGGGGTTATGGGTTTAGGGATTAGTGTTTAA
1 GGTTTA-GGGTTATAGGTTTAGAGATTAATGTTTAA
*
82482445 AGTTT
1 GGTTT
82482450 CTAGTTTAGG
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
35 6 0.17
36 29 0.83
ACGTcount: A:0.22, C:0.00, G:0.33, T:0.45
Consensus pattern (35 bp):
GGTTTAGGGTTATAGGTTTAGAGATTAATGTTTAA
Found at i:82482514 original size:22 final size:22
Alignment explanation
Indices: 82482487--82482528 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
82482477 GTTTTGAGTG
* *
82482487 TTTAGGGTTTATGGTTTAGGAT
1 TTTAGGATTTAAGGTTTAGGAT
82482509 TTTAGGATTTAAGGTTTAGG
1 TTTAGGATTTAAGGTTTAGG
82482529 GGTTTAGAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.21, C:0.00, G:0.31, T:0.48
Consensus pattern (22 bp):
TTTAGGATTTAAGGTTTAGGAT
Found at i:82482950 original size:39 final size:39
Alignment explanation
Indices: 82482894--82482971 Score: 122
Period size: 41 Copynumber: 2.0 Consensus size: 39
82482884 CATTATATTC
82482894 AATTTTAAAATTGAACAATT-AAATAATGTCATATTAAA
1 AATTTTAAAATTGAACAATTAAAATAATGTCATATTAAA
*
82482932 AATTTTAAAAATTTAACAATTAAAAATAATGTCATATTAA
1 AATTTT-AAAATTGAACAATT-AAAATAATGTCATATTAA
82482972 TGTATCAAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
38 6 0.17
39 13 0.36
41 17 0.47
ACGTcount: A:0.54, C:0.05, G:0.04, T:0.37
Consensus pattern (39 bp):
AATTTTAAAATTGAACAATTAAAATAATGTCATATTAAA
Found at i:82484995 original size:23 final size:21
Alignment explanation
Indices: 82484965--82485012 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
82484955 TTATAAATAT
*
82484965 TATA-TTTTAAATATTAAAACC
1 TATATTTTTTAATA-TAAAACC
*
82484986 TATATTTTTTAATATATAACC
1 TATATTTTTTAATATAAAACC
82485007 TATATT
1 TATATT
82485013 ATAGTATGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 16 0.67
22 8 0.33
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (21 bp):
TATATTTTTTAATATAAAACC
Found at i:82485055 original size:123 final size:122
Alignment explanation
Indices: 82484751--82485211 Score: 748
Period size: 123 Copynumber: 3.8 Consensus size: 122
82484741 CTTTGAAGAA
* * * * * *
82484751 TTAATATGTAACCTATATTAATATGGATA-AGTAACCTATATTTCAAATTTATTTCTAATAAGTT
1 TTAATATATAACCTATATTAGTATGGATATA-TAACCTACATTTCAAATTCATTACTAATAAATT
*
82484815 TTTAAAGTTTAAAAATAATTATAATTATTATATTTTAAATAACTTAAAACTTATATTT
65 TTTAAATTTTAAAAATAATTATAATTATTATATTTTAAATAACTTAAAACTTATATTT
82484873 TTAATATATAACCTATATTAGTATGGATATATAACCTACATTTCAAATTCATTACTAATAAATTT
1 TTAATATATAACCTATATTAGTATGGATATATAACCTACATTTCAAATTCATTACTAATAAATTT
* *
82484938 TTAAATTTTAAAAATAATTATAAATATTATATTTTAAAT-A-TTAAAACCTATATTTT
66 TTAAATTTTAAAAATAATTATAATTATTATATTTTAAATAACTTAAAACTTATA-TTT
* *
82484994 TTAATATATAACCTATATTATAGTATGGATATATAACCTACCTTTCAAATTCATTACTAATAAGT
1 TTAATATATAACCTATA-T-TAGTATGGATATATAACCTACATTTCAAATTCATTACTAATAAAT
82485059 TTTTAAATTTTAAAAATAATTATAATTATTATATTTTTAAATAACTTAAAACTTATATTT
64 TTTTAAATTTTAAAAATAATTATAATTATTATA-TTTTAAATAACTTAAAACTTATATTT
*
82485119 TTAATATAGAACCTATATTAGTATGGATATATAACCTACATTTCAAATTCATTACTAATAAATTT
1 TTAATATATAACCTATATTAGTATGGATATATAACCTACATTTCAAATTCATTACTAATAAATTT
82485184 TTAAATTTTAAAAATAATTATAATTATT
66 TTAAATTTTAAAAATAATTATAATTATT
82485212 TACATAACTT
Statistics
Matches: 316, Mismatches: 16, Indels: 13
0.92 0.05 0.04
Matches are distributed among these distances:
120 11 0.03
121 21 0.07
122 95 0.30
123 149 0.47
124 9 0.03
125 20 0.06
126 11 0.03
ACGTcount: A:0.43, C:0.08, G:0.04, T:0.45
Consensus pattern (122 bp):
TTAATATATAACCTATATTAGTATGGATATATAACCTACATTTCAAATTCATTACTAATAAATTT
TTAAATTTTAAAAATAATTATAATTATTATATTTTAAATAACTTAAAACTTATATTT
Found at i:82485225 original size:9 final size:9
Alignment explanation
Indices: 82485211--82485404 Score: 163
Period size: 9 Copynumber: 22.3 Consensus size: 9
82485201 TTATAATTAT
82485211 TTACATAAC
1 TTACATAAC
*
82485220 TTACATAAT
1 TTACATAAC
82485229 TTACATAAC
1 TTACATAAC
82485238 TTACATAAC
1 TTACATAAC
*
82485247 TTACGTAA-
1 TTACATAAC
82485255 -TACATAA-
1 TTACATAAC
*
82485262 --ATATAAC
1 TTACATAAC
82485269 TTACATAAC
1 TTACATAAC
*
82485278 TTACACAAC
1 TTACATAAC
*
82485287 TTACATAAA
1 TTACATAAC
82485296 TTACATAA-
1 TTACATAAC
* * *
82485304 ATATATATC
1 TTACATAAC
* *
82485313 ATATCAAAAC
1 TTA-CATAAC
*
82485323 TTACATAAT
1 TTACATAAC
82485332 TTACATAAC
1 TTACATAAC
*
82485341 TCACATAAC
1 TTACATAAC
82485350 TTACATAAC
1 TTACATAAC
82485359 TTACATAA-
1 TTACATAAC
82485367 -TACATAA-
1 TTACATAAC
* * *
82485374 ATATATATC
1 TTACATAAC
*
82485383 ATATCATAAC
1 TTA-CATAAC
82485393 TTACATAAC
1 TTACATAAC
82485402 TTA
1 TTA
82485405 GTTATACTTA
Statistics
Matches: 151, Mismatches: 26, Indels: 16
0.78 0.13 0.08
Matches are distributed among these distances:
6 5 0.03
7 13 0.09
8 10 0.07
9 112 0.74
10 11 0.07
ACGTcount: A:0.47, C:0.18, G:0.01, T:0.34
Consensus pattern (9 bp):
TTACATAAC
Found at i:82485227 original size:27 final size:27
Alignment explanation
Indices: 82485197--82485282 Score: 84
Period size: 27 Copynumber: 3.0 Consensus size: 27
82485187 AATTTTAAAA
*
82485197 ATAATTATAATTATTTACATAACTTAC
1 ATAATTATAATTACTTACATAACTTAC
*
82485224 ATAATT-TACATAACTTACATAACTTAC
1 ATAATTATA-ATTACTTACATAACTTAC
* *
82485251 GTAATACATAAATATAACTTACATAACTTAC
1 ATAAT-TAT-AAT-T-ACTTACATAACTTAC
82485282 A
1 A
82485283 CAACTTACAT
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
26 2 0.04
27 26 0.55
29 3 0.06
30 1 0.02
31 15 0.32
ACGTcount: A:0.47, C:0.15, G:0.01, T:0.37
Consensus pattern (27 bp):
ATAATTATAATTACTTACATAACTTAC
Found at i:82491405 original size:43 final size:43
Alignment explanation
Indices: 82491222--82491406 Score: 219
Period size: 43 Copynumber: 4.3 Consensus size: 43
82491212 AAATGGTACT
* *
82491222 TTTAGCAGCATTTGTGATAAAAGCGCCGCTAAAGGTCATGTTA
1 TTTAGCAGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTC
* * *
82491265 TTTAGC-GACGCTTGTGATAAAAGCGCCGCTAAAGGTTATTTTC
1 TTTAGCAG-CGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTC
* * * * *
82491308 TTTAGCGGCGATTGTGATAAAAGCACCGCTAAAGGTAATGATC
1 TTTAGCAGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTC
* * * *
82491351 TTTATCGGCGTTTGTGATAAAAGTGCCGCTAAAGATCATGTTC
1 TTTAGCAGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTC
*
82491394 TTTACCAGCGTTT
1 TTTAGCAGCGTTT
82491407 ATGTGAAAAA
Statistics
Matches: 121, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
42 1 0.01
43 119 0.98
44 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (43 bp):
TTTAGCAGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTC
Found at i:82492891 original size:24 final size:24
Alignment explanation
Indices: 82492864--82492923 Score: 84
Period size: 24 Copynumber: 2.5 Consensus size: 24
82492854 GGATTATTTT
*
82492864 GTTGAGATTTTTTCGATTTAATTA
1 GTTGAGATTTTTTCGATTTAAGTA
* * *
82492888 GTTGAGATTTTCTGGATTTGAGTA
1 GTTGAGATTTTTTCGATTTAAGTA
82492912 GTTGAGATTTTT
1 GTTGAGATTTTT
82492924 ACTAAAAACT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.22, C:0.03, G:0.23, T:0.52
Consensus pattern (24 bp):
GTTGAGATTTTTTCGATTTAAGTA
Found at i:82507267 original size:12 final size:12
Alignment explanation
Indices: 82507252--82507313 Score: 79
Period size: 12 Copynumber: 5.2 Consensus size: 12
82507242 AACTCCATAT
*
82507252 CTACTCTCACTC
1 CTACTCCCACTC
*
82507264 CTACTCCTACTC
1 CTACTCCCACTC
82507276 CTACTCCCACTC
1 CTACTCCCACTC
*
82507288 CCACTCCCACTC
1 CTACTCCCACTC
* *
82507300 CCACTCCTACTC
1 CTACTCCCACTC
82507312 CT
1 CT
82507314 CCTTTGGCGT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 44 1.00
ACGTcount: A:0.16, C:0.56, G:0.00, T:0.27
Consensus pattern (12 bp):
CTACTCCCACTC
Found at i:82507269 original size:6 final size:6
Alignment explanation
Indices: 82507260--82507313 Score: 72
Period size: 6 Copynumber: 9.0 Consensus size: 6
82507250 ATCTACTCTC
* * * *
82507260 ACTCCT ACTCCT ACTCCT ACTCCC ACTCCC ACTCCC ACTCCC ACTCCT
1 ACTCCT ACTCCT ACTCCT ACTCCT ACTCCT ACTCCT ACTCCT ACTCCT
82507308 ACTCCT
1 ACTCCT
82507314 CCTTTGGCGT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 46 1.00
ACGTcount: A:0.17, C:0.57, G:0.00, T:0.26
Consensus pattern (6 bp):
ACTCCT
Found at i:82507275 original size:18 final size:17
Alignment explanation
Indices: 82507252--82507312 Score: 77
Period size: 18 Copynumber: 3.4 Consensus size: 17
82507242 AACTCCATAT
*
82507252 CTACTCTCACTCCTACTC
1 CTACTC-CACTCCCACTC
82507270 CTACTCCTACTCCCACTC
1 CTACTCC-ACTCCCACTC
*
82507288 CCACTCCCACTCCCACTC
1 CTACT-CCACTCCCACTC
82507306 CTACTCC
1 CTACTCC
82507313 TCCTTTGGCG
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
17 3 0.08
18 33 0.87
19 2 0.05
ACGTcount: A:0.16, C:0.57, G:0.00, T:0.26
Consensus pattern (17 bp):
CTACTCCACTCCCACTC
Found at i:82507848 original size:55 final size:55
Alignment explanation
Indices: 82507787--82507892 Score: 167
Period size: 55 Copynumber: 1.9 Consensus size: 55
82507777 ACTCTATTTT
*
82507787 ATCTTCCGATCTCAATTTTACCGACTTAGACGAATTAATTTCGATTTATCTCTCG
1 ATCTTCCGATCTCAACTTTACCGACTTAGACGAATTAATTTCGATTTATCTCTCG
* * * *
82507842 ATCTTCCGATCTCAACTTTATCGACTTGGACGAATTAATTTTGGTTTATCT
1 ATCTTCCGATCTCAACTTTACCGACTTAGACGAATTAATTTCGATTTATCT
82507893 TCCTATCTCA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
55 46 1.00
ACGTcount: A:0.25, C:0.22, G:0.12, T:0.42
Consensus pattern (55 bp):
ATCTTCCGATCTCAACTTTACCGACTTAGACGAATTAATTTCGATTTATCTCTCG
Found at i:82517735 original size:40 final size:41
Alignment explanation
Indices: 82517560--82517773 Score: 272
Period size: 41 Copynumber: 5.3 Consensus size: 41
82517550 TTTGGATCAA
* * *
82517560 AAACGCTGCAAAAGGT-AAGCATTAGCAACGTTTTT-GCAT
1 AAACGCCGCAAAAGGTAAAGCAATAGCAACGTTTTTCTCAT
*
82517599 AAACGCCGCAAAAGGTAAAGTAATAGCAACGTTTTTCTCAT
1 AAACGCCGCAAAAGGTAAAGCAATAGCAACGTTTTTCTCAT
* * *
82517640 AAATGCCGCAAAAGATAAAGCAATAGCGACGTTTTTCTCAT
1 AAACGCCGCAAAAGGTAAAGCAATAGCAACGTTTTTCTCAT
* *
82517681 AAACACCGCAAAAGGTAAAGCAATAGCAACATTTTT-TCAT
1 AAACGCCGCAAAAGGTAAAGCAATAGCAACGTTTTTCTCAT
* * * * *
82517721 AAACGCCGCTAAAGGTAAAGCAATAACGACGTTTTTCCCCT
1 AAACGCCGCAAAAGGTAAAGCAATAGCAACGTTTTTCTCAT
*
82517762 AAATGCCGCAAA
1 AAACGCCGCAAA
82517774 TATTAGGTGC
Statistics
Matches: 150, Mismatches: 22, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
39 15 0.10
40 52 0.35
41 83 0.55
ACGTcount: A:0.39, C:0.21, G:0.17, T:0.23
Consensus pattern (41 bp):
AAACGCCGCAAAAGGTAAAGCAATAGCAACGTTTTTCTCAT
Found at i:82517740 original size:81 final size:82
Alignment explanation
Indices: 82517560--82517757 Score: 276
Period size: 81 Copynumber: 2.5 Consensus size: 82
82517550 TTTGGATCAA
* * * * *
82517560 AAACGCTGCAAAAGGT-AAGCATTAGCAACGTTTTT-GCATAAACGCCGCAAAAGGTAAAGTAAT
1 AAACGCCGCAAAAGGTAAAGCAATAGCGACGTTTTTCGCATAAACACCGCAAAAGGTAAAGCAAT
*
82517623 AGCAACGTTTTTCTCAT
66 AGCAACATTTTTCTCAT
* * *
82517640 AAATGCCGCAAAAGATAAAGCAATAGCGACGTTTTTCTCATAAACACCGCAAAAGGTAAAGCAAT
1 AAACGCCGCAAAAGGTAAAGCAATAGCGACGTTTTTCGCATAAACACCGCAAAAGGTAAAGCAAT
82517705 AGCAACATTTTT-TCAT
66 AGCAACATTTTTCTCAT
* *
82517721 AAACGCCGCTAAAGGTAAAGCAATAACGACGTTTTTC
1 AAACGCCGCAAAAGGTAAAGCAATAGCGACGTTTTTC
82517758 CCCTAAATGC
Statistics
Matches: 103, Mismatches: 13, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
80 13 0.13
81 54 0.52
82 36 0.35
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.24
Consensus pattern (82 bp):
AAACGCCGCAAAAGGTAAAGCAATAGCGACGTTTTTCGCATAAACACCGCAAAAGGTAAAGCAAT
AGCAACATTTTTCTCAT
Found at i:82518733 original size:127 final size:127
Alignment explanation
Indices: 82518507--82518766 Score: 466
Period size: 127 Copynumber: 2.0 Consensus size: 127
82518497 CAAAGAATAA
* *
82518507 TTTATTCTCTTGAGAAATTTATAAGTTTTTACAGTTTTATCACTTTTAAGTGTTTTTTTAAGAAT
1 TTTATTCTCTAGAGAAATTTATAAGTTTTTACAGTTTTATCACTTTTAAGTGTATTTTTAAGAAT
* *
82518572 CATAACTACAATCTTAAAGATTGTATTTGGTAAAACGGATCCGTTTTACTTCTAAATTGTGG
66 CAGAACTACAATCTTAAAGATTGTATTTGGTAAAACGGATCCGATTTACTTCTAAATTGTGG
82518634 TTTATTCTCTAGAGAAATTTATAAGTTTTTACAGTTTTATCACTTTTAAGTGTATTTTTAAGAAT
1 TTTATTCTCTAGAGAAATTTATAAGTTTTTACAGTTTTATCACTTTTAAGTGTATTTTTAAGAAT
* *
82518699 CCGAACTACAATCTTAAAGATTGTATTTGGTAAAACGGATCCGATTTACTTCTAATTTGTGG
66 CAGAACTACAATCTTAAAGATTGTATTTGGTAAAACGGATCCGATTTACTTCTAAATTGTGG
82518761 TTTATT
1 TTTATT
82518767 GTTAATCCTA
Statistics
Matches: 127, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.30, C:0.11, G:0.13, T:0.45
Consensus pattern (127 bp):
TTTATTCTCTAGAGAAATTTATAAGTTTTTACAGTTTTATCACTTTTAAGTGTATTTTTAAGAAT
CAGAACTACAATCTTAAAGATTGTATTTGGTAAAACGGATCCGATTTACTTCTAAATTGTGG
Found at i:82518784 original size:24 final size:24
Alignment explanation
Indices: 82518754--82518809 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
82518744 TTACTTCTAA
* *
82518754 TTTGTGGTTTATTGTTAATCCTAT
1 TTTGTGGTTTATTCTCAATCCTAT
82518778 TTTGTGGTTTATTCTCAATCCTAT
1 TTTGTGGTTTATTCTCAATCCTAT
82518802 TTTGTGGT
1 TTTGTGGT
82518810 AGTCCTGTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.14, C:0.11, G:0.18, T:0.57
Consensus pattern (24 bp):
TTTGTGGTTTATTCTCAATCCTAT
Found at i:82522424 original size:33 final size:33
Alignment explanation
Indices: 82522387--82522452 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
82522377 TGGTTATATC
* *
82522387 TGTTGGGACAAAATGGCAGCAAACATGAGCAAA
1 TGTTGGAACAAAATGACAGCAAACATGAGCAAA
82522420 TGTTGGAACAAAATGACAGCAAACATGAGCAAA
1 TGTTGGAACAAAATGACAGCAAACATGAGCAAA
82522453 CACAAACAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.45, C:0.15, G:0.24, T:0.15
Consensus pattern (33 bp):
TGTTGGAACAAAATGACAGCAAACATGAGCAAA
Found at i:82525103 original size:18 final size:19
Alignment explanation
Indices: 82525066--82525104 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
82525056 CTGCAGCCTA
* *
82525066 TTTGATTTTCTGCCAAAGC
1 TTTGAATTTCTGCAAAAGC
82525085 TTTGAATTT-TGCAAAAGC
1 TTTGAATTTCTGCAAAAGC
82525103 TT
1 TT
82525105 AAAATGCCTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (19 bp):
TTTGAATTTCTGCAAAAGC
Found at i:82526934 original size:33 final size:33
Alignment explanation
Indices: 82526897--82526962 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
82526887 GATTACCATT
* *
82526897 TGTTGGGACAAAATGGCAGCAAACATGAGCAAA
1 TGTTGGAACAAAATCGCAGCAAACATGAGCAAA
82526930 TGTTGGAACAAAATCGCAGCAAACATGAGCAAA
1 TGTTGGAACAAAATCGCAGCAAACATGAGCAAA
82526963 AACAAACAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.44, C:0.17, G:0.24, T:0.15
Consensus pattern (33 bp):
TGTTGGAACAAAATCGCAGCAAACATGAGCAAA
Found at i:82540616 original size:92 final size:92
Alignment explanation
Indices: 82540486--82540686 Score: 280
Period size: 92 Copynumber: 2.2 Consensus size: 92
82540476 ATTAAACTCT
** * * * * * *
82540486 TTTTTTTTACACTTAATTGGGTACTTAAACTTTTAAAATGCATCAAAAAGGCTCTCAAACTTTTT
1 TTTTTTTTGTACTCAATTGGGTACTTAAACTGTCAAAATGCATCAAAAAGACCCTAAAACTTTTT
82540551 CAA-AACAAGCAATTAAGCCCATGCTCC
66 CAACAA-AAGCAATTAAGCCCATGCTCC
* *
82540578 TTTTTTTTGTACTCAATTGGGTACTTGAACTGTCAAAATGCATCAAAAAGACCCTAAAATTTTTT
1 TTTTTTTTGTACTCAATTGGGTACTTAAACTGTCAAAATGCATCAAAAAGACCCTAAAACTTTTT
*
82540643 TAACAAAAGCAATTAAGCCCATGCTCC
66 CAACAAAAGCAATTAAGCCCATGCTCC
82540670 -TTTTTTTGTACTCAATT
1 TTTTTTTTGTACTCAATT
82540687 TCCAAAATAC
Statistics
Matches: 97, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
91 17 0.18
92 78 0.80
93 2 0.02
ACGTcount: A:0.33, C:0.19, G:0.10, T:0.37
Consensus pattern (92 bp):
TTTTTTTTGTACTCAATTGGGTACTTAAACTGTCAAAATGCATCAAAAAGACCCTAAAACTTTTT
CAACAAAAGCAATTAAGCCCATGCTCC
Found at i:82542535 original size:146 final size:146
Alignment explanation
Indices: 82542270--82542570 Score: 584
Period size: 146 Copynumber: 2.1 Consensus size: 146
82542260 GCCCATTTTC
82542270 ACTGAATTGATTGCTAAGGTTGCACGGGTCGCCCAAGTCGACTTTGAACCTACTGTAGGGTCCGT
1 ACTGAATTGATTGCTAAGGTTGCACGGGTCGCCCAAGTCGACTTTGAACCTACTGTAGGGTCCGT
82542335 AAGCATCACTTAGACCCCTAATTGTATGAACTGACTGTTTGATTTATATATGTGTAGAGCATGAT
66 AAGCATCACTTAGACCCCTAATTGTATGAACTGACTGTTTGATTTATATATGTGTAGAGCATGAT
82542400 GATAGTATGCTTGTAT
131 GATAGTATGCTTGTAT
*
82542416 CCTGAATTGATTGCTAAGGTTGCACGGGTCGCCCAAGTCGACTTTGAACCTACTGTAGGGTCCGT
1 ACTGAATTGATTGCTAAGGTTGCACGGGTCGCCCAAGTCGACTTTGAACCTACTGTAGGGTCCGT
*
82542481 AAGCATCACTTAGACCCCTAATTGTATGAACTGACTGTTTGATTTATATATGTGTTGAGCATGAT
66 AAGCATCACTTAGACCCCTAATTGTATGAACTGACTGTTTGATTTATATATGTGTAGAGCATGAT
82542546 GATAGTATGCTTGTAT
131 GATAGTATGCTTGTAT
82542562 ACTGAATTG
1 ACTGAATTG
82542571 GTTATATGTA
Statistics
Matches: 152, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
146 152 1.00
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (146 bp):
ACTGAATTGATTGCTAAGGTTGCACGGGTCGCCCAAGTCGACTTTGAACCTACTGTAGGGTCCGT
AAGCATCACTTAGACCCCTAATTGTATGAACTGACTGTTTGATTTATATATGTGTAGAGCATGAT
GATAGTATGCTTGTAT
Found at i:82551688 original size:17 final size:18
Alignment explanation
Indices: 82551666--82551701 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
82551656 CACAGATATT
82551666 TTTAAAAATATA-ATAAA
1 TTTAAAAATATATATAAA
*
82551683 TTTAAATATATATATAAA
1 TTTAAAAATATATATAAA
82551701 T
1 T
82551702 AAATATTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
TTTAAAAATATATATAAA
Found at i:82552490 original size:294 final size:294
Alignment explanation
Indices: 82551937--82552816 Score: 886
Period size: 294 Copynumber: 3.0 Consensus size: 294
82551927 AAAGAAATTA
82551937 TGTTATATCTATACTATTTATTAAGTATTTTACTGAG-TTAGTGTCACCCTCAATTGGGTCACCA
1 TGTTATATCTATACTATTTATTAAGTATTTTACTGAGTTTA-TGTCACCCTCAATTGGGTCACCA
* * * * **
82552001 ATTCGATTAGGAAATTACGAAAATGTCATTTCATGATTAAAATAAGTTATCCTATTTGATGGTAT
65 ATTCGATTAAGAAATTACGAAAATGTCCTTTCGTAATTAAAATAAGTTATATTATTTGATGGTAT
* * * *
82552066 TTTGGTCTTTCATTTTAACGAAAATCAATTAAAATATGCATATGATAA-AATTTGAACCGATACC
130 TTTAGTTTTTCATTTTAACAAAAATCAATTAAAATATGCATATG-TAAGAA-TTGAACCCAT-CC
* * * * * * ** * * *
82552130 AGTTGGATTAATAATTA-TTTAAATTTACCACTCAACTAAAGTTTCA-TTTGGTGTATTTTCTAC
192 AATTGGATTACTAA-AACATTAAATTTATCACTCAACAAAAGTTTCATTTTAATATATCTTATAC
*
82552193 ATTTTTATTTTAATATGCACATGTTATCATCT-CTATTAAT
256 ATTTTTATTTTAATATACACAT-TTATCATCTAC-ATTAAT
* *
82552233 TGTT-TATCTATAATATTTATTAAGTGTTTTACTGAGTTTAT-TCACCCTCAATTGGGTCACCAA
1 TGTTATATCTATACTATTTATTAAGTATTTTACTGAGTTTATGTCACCCTCAATTGGGTCACCAA
* * *
82552296 TTCGATTAAAAAATTACGAAAATGTCCTTCCGTAAGTAAAATAAGTTATATTATTTGATGGTATT
66 TTCGATTAAGAAATTACGAAAATGTCCTTTCGTAATTAAAATAAGTTATATTATTTGATGGTATT
* * * *
82552361 TTAATATTTTCATTTTAACAAAAACCAATTAAAATATGCATA-GTAAGAGTTAAACCCATGCCAA
131 TTAGT-TTTTCATTTTAACAAAAATCAATTAAAATATGCATATGTAAGAATTGAACCCAT-CCAA
* * * * * * *
82552425 TTGAATTACTAAAACCTTAAATTTATTATTCAACCAAAGTTTTATTTTCATATATCTTATACATT
194 TTGGATTACTAAAACATTAAATTTATCACTCAACAAAAGTTTCATTTTAATATATCTTATACATT
* *
82552490 TTTATTTTAATATACACAATTTATTATCTACATTAGT
259 TTTATTTTAATATACAC-ATTTATCATCTACATTAAT
* * ** * ** *
82552527 TGTTTATATATCTATACTATTTTATTAAG-CTTCTAGCTGAGTTGGTGTCACCTTCAACCGGATC
1 TG--T-TATATCTATACTA-TTTATTAAGTATTTTA-CTGAGTTTATGTCACCCTCAATTGGGTC
* * * * * * * * * *
82552591 ACCAACTCGGTTGAGAAATTATGAAAATATCCTTTTGTAATTAAAAAAAGTTAAATTATTCGAGG
61 ACCAATTCGATTAAGAAATTACGAAAATGTCCTTTCGTAATTAAAATAAGTTATATTATTTGATG
* * *
82552656 GTATTTTAGTTTTTTATTTAAACAAAAATCAA-T-AAATATGCATATGGT-GGAATTCGAACTCG
126 GTATTTTAGTTTTTCATTTTAACAAAAATCAATTAAAATATGCATAT-GTAAGAATT-GAAC-C-
** *
82552718 CA-CCAATTGGATTACTAAAACATTAAATTTATCACTCAACAAAAACTTCATTTTAATATAACTT
187 CATCCAATTGGATTACTAAAACATTAAATTTATCACTCAACAAAAGTTTCATTTTAATATATCTT
* * * *
82552782 ATACAATTTTGTTTTAATATACACAATTATTATCT
252 ATACATTTTTATTTTAATATACACATTTATCATCT
82552817 CAGTAAATTG
Statistics
Matches: 485, Mismatches: 80, Indels: 36
0.81 0.13 0.06
Matches are distributed among these distances:
292 1 0.00
293 47 0.10
294 129 0.27
295 67 0.14
296 8 0.02
297 12 0.02
298 29 0.06
299 115 0.24
300 75 0.15
301 2 0.00
ACGTcount: A:0.35, C:0.14, G:0.10, T:0.41
Consensus pattern (294 bp):
TGTTATATCTATACTATTTATTAAGTATTTTACTGAGTTTATGTCACCCTCAATTGGGTCACCAA
TTCGATTAAGAAATTACGAAAATGTCCTTTCGTAATTAAAATAAGTTATATTATTTGATGGTATT
TTAGTTTTTCATTTTAACAAAAATCAATTAAAATATGCATATGTAAGAATTGAACCCATCCAATT
GGATTACTAAAACATTAAATTTATCACTCAACAAAAGTTTCATTTTAATATATCTTATACATTTT
TATTTTAATATACACATTTATCATCTACATTAAT
Found at i:82568136 original size:32 final size:31
Alignment explanation
Indices: 82568089--82568148 Score: 84
Period size: 32 Copynumber: 1.9 Consensus size: 31
82568079 ATATAAAAAT
*
82568089 TAGAAAATTTATAAAAATATTATAAAAAACTG
1 TAGAAAATTTATAAAAAAATTA-AAAAAACTG
* *
82568121 TAGAAATTTTTTAAAAAAATTAAAAAAA
1 TAGAAAATTTATAAAAAAATTAAAAAAA
82568149 TTAAAAATAG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 6 0.24
32 19 0.76
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.32
Consensus pattern (31 bp):
TAGAAAATTTATAAAAAAATTAAAAAAACTG
Found at i:82568147 original size:8 final size:9
Alignment explanation
Indices: 82568131--82568155 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
82568121 TAGAAATTTT
82568131 TTAAAAAAA
1 TTAAAAAAA
82568140 TTAAAAAAA
1 TTAAAAAAA
82568149 TTAAAAA
1 TTAAAAA
82568156 TAGTGTAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (9 bp):
TTAAAAAAA
Found at i:82568428 original size:26 final size:28
Alignment explanation
Indices: 82568376--82568436 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 28
82568366 TAACTTTTAC
82568376 ATATTTTTATAATTATTTTAATTATTTT
1 ATATTTTTATAATTATTTTAATTATTTT
*
82568404 ATATTTTTATCA-T-TTTT-ATTGATTTT
1 ATATTTTTATAATTATTTTAATT-ATTTT
82568430 A-ATTTTT
1 ATATTTTT
82568437 GATTTTTTCA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
25 9 0.29
26 10 0.32
27 1 0.03
28 11 0.35
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.69
Consensus pattern (28 bp):
ATATTTTTATAATTATTTTAATTATTTT
Found at i:82569316 original size:3 final size:3
Alignment explanation
Indices: 82569308--82570148 Score: 1682
Period size: 3 Copynumber: 280.3 Consensus size: 3
82569298 AAGATGGAAA
82569308 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
82569356 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
82569404 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
82569452 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
82569500 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
82569548 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
82569596 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
82569644 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
82569692 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
82569740 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
82569788 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
82569836 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
82569884 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
82569932 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
82569980 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
82570028 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
82570076 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
82570124 CTT CTT CTT CTT CTT CTT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT C
82570149 ATTGAAGGGT
Statistics
Matches: 838, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 838 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
CTT
Found at i:82570939 original size:25 final size:25
Alignment explanation
Indices: 82570908--82570963 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 25
82570898 TATATATGAC
*
82570908 TTGATAACGAATTGAATTACGATGG
1 TTGATAACGAATTGAATAACGATGG
82570933 TTGATAACGAATTGAATAACGATGG
1 TTGATAACGAATTGAATAACGATGG
*
82570958 TGGATA
1 TTGATA
82570964 TGATTGAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.30
Consensus pattern (25 bp):
TTGATAACGAATTGAATAACGATGG
Found at i:82571123 original size:19 final size:19
Alignment explanation
Indices: 82571101--82571167 Score: 57
Period size: 19 Copynumber: 3.5 Consensus size: 19
82571091 TGCCAAGATT
82571101 CACTTCGTGTGCCAGAATG
1 CACTTCGTGTGCCAGAATG
*
82571120 CACTAT-GTGTGCCA-ATACG
1 CACT-TCGTGTGCCAGA-ATG
* * *
82571139 CACTTCGAGCGCCAGTATG
1 CACTTCGTGTGCCAGAATG
82571158 CACTTACGTG
1 CACTT-CGTG
82571168 CCAATTAACT
Statistics
Matches: 37, Mismatches: 6, Indels: 9
0.71 0.12 0.17
Matches are distributed among these distances:
18 2 0.05
19 31 0.84
20 4 0.11
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.25
Consensus pattern (19 bp):
CACTTCGTGTGCCAGAATG
Found at i:82578893 original size:23 final size:23
Alignment explanation
Indices: 82578867--82578912 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
82578857 TTTAATCCTC
82578867 AAGCAACTTCCGTTGTCATGCTT
1 AAGCAACTTCCGTTGTCATGCTT
82578890 AAGCAACTTCCGTTGTCATGCTT
1 AAGCAACTTCCGTTGTCATGCTT
82578913 GTTAGCTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (23 bp):
AAGCAACTTCCGTTGTCATGCTT
Found at i:82582941 original size:23 final size:23
Alignment explanation
Indices: 82582911--82583025 Score: 139
Period size: 23 Copynumber: 5.2 Consensus size: 23
82582901 TTTAAGTGGA
82582911 TGTGTTTGGAGGGTATATTTGGT
1 TGTGTTTGGAGGGTATATTTGGT
82582934 TGTGTTTGGAGGGTATATTTGG-
1 TGTGTTTGGAGGGTATATTTGGT
* *
82582956 T-TG-TTGAAGGGCATATTTGGT
1 TGTGTTTGGAGGGTATATTTGGT
* * *
82582977 TGTGTTTGGAAGGTACATATGGT
1 TGTGTTTGGAGGGTATATTTGGT
* *
82583000 TGTATTTGGAGGGTA-AATTGGT
1 TGTGTTTGGAGGGTATATTTGGT
82583022 TGTG
1 TGTG
82583026 CTTAGAGGCT
Statistics
Matches: 77, Mismatches: 12, Indels: 7
0.80 0.12 0.07
Matches are distributed among these distances:
20 15 0.19
21 3 0.04
22 11 0.14
23 48 0.62
ACGTcount: A:0.17, C:0.02, G:0.37, T:0.43
Consensus pattern (23 bp):
TGTGTTTGGAGGGTATATTTGGT
Found at i:82582971 original size:20 final size:20
Alignment explanation
Indices: 82582920--82582979 Score: 75
Period size: 20 Copynumber: 2.9 Consensus size: 20
82582910 ATGTGTTTGG
*
82582920 AGGGTATATTTGGTTGTGTTTGG
1 AGGGTATATTTGG-T-TG-TTGA
82582943 AGGGTATATTTGGTTGTTGA
1 AGGGTATATTTGGTTGTTGA
*
82582963 AGGGCATATTTGGTTGT
1 AGGGTATATTTGGTTGT
82582980 GTTTGGAAGG
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
20 19 0.54
21 2 0.06
22 1 0.03
23 13 0.37
ACGTcount: A:0.17, C:0.02, G:0.37, T:0.45
Consensus pattern (20 bp):
AGGGTATATTTGGTTGTTGA
Found at i:82582986 original size:43 final size:43
Alignment explanation
Indices: 82582920--82583002 Score: 130
Period size: 43 Copynumber: 1.9 Consensus size: 43
82582910 ATGTGTTTGG
* * * *
82582920 AGGGTATATTTGGTTGTGTTTGGAGGGTATATTTGGTTGTTGA
1 AGGGCATATTTGGTTGTGTTTGGAAGGTACATATGGTTGTTGA
82582963 AGGGCATATTTGGTTGTGTTTGGAAGGTACATATGGTTGT
1 AGGGCATATTTGGTTGTGTTTGGAAGGTACATATGGTTGT
82583003 ATTTGGAGGG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.18, C:0.02, G:0.36, T:0.43
Consensus pattern (43 bp):
AGGGCATATTTGGTTGTGTTTGGAAGGTACATATGGTTGTTGA
Found at i:82584607 original size:29 final size:29
Alignment explanation
Indices: 82584535--82584607 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
82584525 TCTGTCGACA
* *
82584535 TCACACGGTCGTGTGGCAAACCATGTGGG
1 TCACACGGTCATGTGCCAAACCATGTGGG
* *
82584564 TCACACGGCCATGTGCCAGACCATGTGGG
1 TCACACGGTCATGTGCCAAACCATGTGGG
* *
82584593 TTACACGGTCTTGTG
1 TCACACGGTCATGTG
82584608 GTTGGCCGTG
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.23
Consensus pattern (29 bp):
TCACACGGTCATGTGCCAAACCATGTGGG
Found at i:82587963 original size:3 final size:3
Alignment explanation
Indices: 82587955--82587979 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
82587945 AATATTCACC
82587955 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
82587980 TAATTTTAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:82588246 original size:20 final size:19
Alignment explanation
Indices: 82588212--82588257 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
82588202 CTAATTCTAA
*
82588212 AAAAATTAAAAATATATAT
1 AAAAATAAAAAATATATAT
* *
82588231 AAAAATAAAAAGATATTTTT
1 AAAAATAAAAA-ATATATAT
82588251 AAAAATA
1 AAAAATA
82588258 TAATAATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (19 bp):
AAAAATAAAAAATATATAT
Found at i:82589144 original size:297 final size:293
Alignment explanation
Indices: 82588445--82589337 Score: 822
Period size: 297 Copynumber: 3.0 Consensus size: 293
82588435 GAAATTATGT
* * * * * * * * *
82588445 TATATCTATACTATTTATTAAGTATTTTATTGAGTTGGTGTCACCATCAATTGGGTCACCAAT-T
1 TATATCTATAATACTTATTAAATATTTTACTAAG-TAGT-TCACCCTCAATCGGGTCACCAATCA
* * * * * *
82588509 GAATTAAGAAATTACGAAAATGTCCTTT-CATTATTAAAATAAGTTATACTATTTGATGGTGTTT
64 G-GTTAGGAAATTAAGAAAATGT-CTTTCCATAACTAAAATAAGTTATACTATTTGATGGTATTT
* ** * * *
82588573 TAGTCTTTTCATTTTAATGAAAATCAATTAAAATATTCATATAATAAAATTTAAACCCAACCAAT
127 TAATCTTTTCATTTTAACAAAAACCAATTAAAATATGCATAAAATAAAATTTAAACCCAACCAAT
* * * *
82588638 TAGATTAATAATCACTTAATTTTACCACTCAACTAAAGCTTCATTTGGTGTATTTTATACATTTT
192 TAGATTAATAATAACTTAAATTTACCACTCAACTAAAGCTTCATTTGGTATATTTAATACATTTT
*
82588703 TATTTTAATATGCACAAGTTATTATCTCTATTAATTG
257 TATTTTAATATGCACAAGTTATTATCTCCATTAATTG
* * * * * *
82588740 TTTATCTATAATATTTATTAAATGTTTTACTAAGTTTGTTCACCCTCAATTGGGTCACCAATCCG
1 TATATCTATAATACTTATTAAATATTTTACTAAG-TAGTTCACCCTCAATCGGGTCACCAATCAG
* * * **
82588805 GTTAGGAAATTACGAAAATGTCTTTCCATAAGTAAAATAAGTTATATTATTTGATGACATTTTAA
65 GTTAGGAAATTAAGAAAATGTCTTTCCATAACTAAAATAAGTTATACTATTTGATGGTATTTTAA
* * **** * *
82588870 TCTTTTCATTTTAACAAAAACCAATTAAAATATGCATAAAATAATATTTAAGCTTGTGCTAATTG
130 TCTTTTCATTTTAACAAAAACCAATTAAAATATGCATAAAATAAAATTTAAAC-CCAACCAATTA
*
82588935 GATTAGTAA-AATCTTAAATTTACCACTCAA-TCAAAGCTTCATATTGGTATATTTAATACATTT
194 GATTAATAATAA-CTTAAATTTACCACTCAACT-AAAGCTTCAT-TTGGTATATTTAATACATTT
* *
82588998 TTATTTTAATATGCATAAGTTATTATCTCCATTAGTTG
256 TTATTTTAATATGCACAAGTTATTATCTCCATTAATTG
* * * **
82589036 TATATTTATACGTACTACTTATTAAGTATTTTACTGAG-AG-TCTTCCTCAATCGGGTCACCAA-
1 TATATCTATA---A-TACTTATTAAATATTTTACTAAGTAGTTCACCCTCAATCGGGTCACCAAT
* * * *
82589098 CTATGTTA-GAAAGTTATAG-AAATGTCTTTCCATAACTAAAATAAGTTGTACTGTTTGAGGGTA
62 C-AGGTTAGGAAA-TTA-AGAAAATGTCTTTCCATAACTAAAATAAGTTATACTATTTGATGGTA
* * *** **
82589161 TTTT-AGCATTTTCATTTTAACAAAAACCAATTAAAATATGCATATAATGGGATTTGCACCCACA
124 TTTTAATC-TTTTCATTTTAACAAAAACCAATTAAAATATGCATAAAATAAAATTTAAACCCA-A
* * ***** * *
82589225 CCAATTGGATTAGTAA-AACCTTAAATTTGTTTTTCAACTAAAGCTTTATTT--TAATGCATTTT
187 CCAATTAGATTAATAATAA-CTTAAATTTACCACTCAACTAAAGCTTCATTTGGT-AT--ATTTA
* *
82589287 ATACATTTTTATTTTAATATACACAAGTTATTATCTTCATTAATTG
248 ATACATTTTTATTTTAATATGCACAAGTTATTATCTCCATTAATTG
82589333 TATAT
1 TATAT
82589338 ATTAATAATG
Statistics
Matches: 495, Mismatches: 84, Indels: 36
0.80 0.14 0.06
Matches are distributed among these distances:
293 4 0.01
294 122 0.25
295 75 0.15
296 70 0.14
297 201 0.41
298 3 0.01
299 1 0.00
300 19 0.04
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.41
Consensus pattern (293 bp):
TATATCTATAATACTTATTAAATATTTTACTAAGTAGTTCACCCTCAATCGGGTCACCAATCAGG
TTAGGAAATTAAGAAAATGTCTTTCCATAACTAAAATAAGTTATACTATTTGATGGTATTTTAAT
CTTTTCATTTTAACAAAAACCAATTAAAATATGCATAAAATAAAATTTAAACCCAACCAATTAGA
TTAATAATAACTTAAATTTACCACTCAACTAAAGCTTCATTTGGTATATTTAATACATTTTTATT
TTAATATGCACAAGTTATTATCTCCATTAATTG
Found at i:82601745 original size:26 final size:26
Alignment explanation
Indices: 82601709--82601762 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
82601699 TACAGCCAGT
82601709 GACGATACCGAAATGGAAATGGGAAA
1 GACGATACCGAAATGGAAATGGGAAA
*
82601735 GACGATACCGAAATGGAAATGTGAAA
1 GACGATACCGAAATGGAAATGGGAAA
82601761 GA
1 GA
82601763 GTTACTATGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.46, C:0.11, G:0.30, T:0.13
Consensus pattern (26 bp):
GACGATACCGAAATGGAAATGGGAAA
Found at i:82617651 original size:10 final size:9
Alignment explanation
Indices: 82617632--82617711 Score: 52
Period size: 9 Copynumber: 7.9 Consensus size: 9
82617622 TCCCTTCACG
82617632 TTTCTTTTT
1 TTTCTTTTT
82617641 TTTCTTTTT
1 TTTCTTTTT
* *
82617650 TTTCTCTAT
1 TTTCTTTTT
*
82617659 TCTCTTTTT
1 TTTCTTTTT
82617668 TTCTCCTTTTGT
1 TT-T-CTTTT-T
82617680 TTCTCTTCTTT
1 TT-TCTT-TTT
82617691 GAATTTCTTTCTT
1 ---TTTCTTT-TT
82617704 TTTCTTTT
1 TTTCTTTT
82617712 GATGTTAATT
Statistics
Matches: 57, Mismatches: 6, Indels: 16
0.72 0.08 0.20
Matches are distributed among these distances:
9 24 0.42
10 8 0.14
11 9 0.16
12 8 0.14
13 6 0.11
14 2 0.04
ACGTcount: A:0.04, C:0.19, G:0.03, T:0.75
Consensus pattern (9 bp):
TTTCTTTTT
Found at i:82617688 original size:27 final size:26
Alignment explanation
Indices: 82617634--82617688 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 26
82617624 CCTTCACGTT
*
82617634 TCTTTTTTTTCTTTTTTTTCTCTATTC
1 TCTTTTTTTTCTTTTGTTTCTC-ATTC
82617661 TCTTTTTTTCTCCTTTTGTTTCTC-TTC
1 TCTTTTTTT-T-CTTTTGTTTCTCATTC
82617688 T
1 T
82617689 TTGAATTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
27 13 0.52
28 1 0.04
29 11 0.44
ACGTcount: A:0.02, C:0.22, G:0.02, T:0.75
Consensus pattern (26 bp):
TCTTTTTTTTCTTTTGTTTCTCATTC
Found at i:82624019 original size:63 final size:63
Alignment explanation
Indices: 82623916--82624105 Score: 308
Period size: 63 Copynumber: 3.0 Consensus size: 63
82623906 GGGTTGCCCC
* *
82623916 TAACACCCACTAAGAAAGATTCTGCTTAGGTCATCATAGATCATTTGACCAAATCTGCCCATT
1 TAACACCCACTAAGAAAGATTCTGTTTAGGTCATCGTAGATCATTTGACCAAATCTGCCCATT
* * * *
82623979 TAACACCCACTAAGAAAGATTCTGTTTAAGTCATTGTAGATCATTTGACCAAATTTTCCCATT
1 TAACACCCACTAAGAAAGATTCTGTTTAGGTCATCGTAGATCATTTGACCAAATCTGCCCATT
* *
82624042 TAACACCCACTAAGTAAGATTCTGTTTAGGTCATCGTGGATCATTTGACCAAATCTGCCCATT
1 TAACACCCACTAAGAAAGATTCTGTTTAGGTCATCGTAGATCATTTGACCAAATCTGCCCATT
82624105 T
1 T
82624106 TCTTTTTATT
Statistics
Matches: 115, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
63 115 1.00
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.32
Consensus pattern (63 bp):
TAACACCCACTAAGAAAGATTCTGTTTAGGTCATCGTAGATCATTTGACCAAATCTGCCCATT
Found at i:82626454 original size:20 final size:21
Alignment explanation
Indices: 82626416--82626455 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
82626406 AAAATGTTAT
*
82626416 GTATGTCCTGATATTTGATAA
1 GTATGACCTGATATTTGATAA
82626437 GTATGACCTGAT-TTTGATA
1 GTATGACCTGATATTTGATA
82626456 TTGAACATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.28, C:0.10, G:0.20, T:0.42
Consensus pattern (21 bp):
GTATGACCTGATATTTGATAA
Found at i:82627871 original size:16 final size:16
Alignment explanation
Indices: 82627846--82627888 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
82627836 ATTAATTCAA
82627846 TAATTAAACT-GAATAAT
1 TAATT-AACTAGAA-AAT
*
82627863 TAATTAACTAGCAAAT
1 TAATTAACTAGAAAAT
82627879 TAATTAACTA
1 TAATTAACTA
82627889 TACTTAAGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 17 0.71
17 7 0.29
ACGTcount: A:0.51, C:0.09, G:0.05, T:0.35
Consensus pattern (16 bp):
TAATTAACTAGAAAAT
Found at i:82630381 original size:44 final size:44
Alignment explanation
Indices: 82630331--82630424 Score: 172
Period size: 44 Copynumber: 2.2 Consensus size: 44
82630321 AACTATGTTT
*
82630331 TTAGTTTCTCACTTAAACTCTAATTAGTTTAGGTTATTTTAATA
1 TTAGTTTCCCACTTAAACTCTAATTAGTTTAGGTTATTTTAATA
82630375 TTAGTTTCCCACTTAAACTCTAATTAGTTTAGGTTATTTTAATA
1 TTAGTTTCCCACTTAAACTCTAATTAGTTTAGGTTATTTTAATA
82630419 TT-GTTT
1 TTAGTTT
82630425 GACCTATTAA
Statistics
Matches: 49, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
43 4 0.08
44 45 0.92
ACGTcount: A:0.28, C:0.12, G:0.10, T:0.51
Consensus pattern (44 bp):
TTAGTTTCCCACTTAAACTCTAATTAGTTTAGGTTATTTTAATA
Found at i:82635980 original size:20 final size:21
Alignment explanation
Indices: 82635957--82636003 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
82635947 AAAGTACATC
82635957 AAATATATAAAT-ATTTTA-AA
1 AAAT-TATAAATAATTTTACAA
*
82635977 AAATTATAATTAATTTTACAA
1 AAATTATAAATAATTTTACAA
82635998 AAATTA
1 AAATTA
82636004 GAGAGTGATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 6 0.25
20 10 0.42
21 8 0.33
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (21 bp):
AAATTATAAATAATTTTACAA
Found at i:82637537 original size:40 final size:39
Alignment explanation
Indices: 82637462--82637537 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 39
82637452 GAATCAGTTT
**
82637462 GGGCCTTAGCCCATTCAGATACAGTCTCAGAATACATTA
1 GGGCCTTAGCCCATTCAGATACAGAATCAGAATACATTA
*
82637501 GGGCCTTGGCCCATATCAGATACAGAATGCAG-ATACA
1 GGGCCTTAGCCCAT-TCAGATACAGAAT-CAGAATACA
82637538 GTAAATCAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
39 13 0.41
40 16 0.50
41 3 0.09
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.22
Consensus pattern (39 bp):
GGGCCTTAGCCCATTCAGATACAGAATCAGAATACATTA
Found at i:82640834 original size:16 final size:17
Alignment explanation
Indices: 82640813--82640847 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
82640803 AATTGGATTG
82640813 AGAAAATT-ATTTAATT
1 AGAAAATTAATTTAATT
*
82640829 AGAAAATTAATTTAGTT
1 AGAAAATTAATTTAATT
82640846 AG
1 AG
82640848 TTTGATTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.49, C:0.00, G:0.11, T:0.40
Consensus pattern (17 bp):
AGAAAATTAATTTAATT
Found at i:82647311 original size:18 final size:18
Alignment explanation
Indices: 82647267--82647311 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
82647257 GCAATAAGAA
82647267 AATGTTTTGAAATTGAAT
1 AATGTTTTGAAATTGAAT
* *
82647285 AACGATTTGTAAA-TGAAT
1 AATGTTTTG-AAATTGAAT
82647303 AATGTTTTG
1 AATGTTTTG
82647312 GAAACGAACG
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
18 19 0.86
19 3 0.14
ACGTcount: A:0.38, C:0.02, G:0.18, T:0.42
Consensus pattern (18 bp):
AATGTTTTGAAATTGAAT
Found at i:82652349 original size:6 final size:6
Alignment explanation
Indices: 82652338--82652371 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
82652328 GACAAGGCAT
*
82652338 TTGTGG TTGTGG TTGTGG TTGTAG TTGTGG TTGT
1 TTGTGG TTGTGG TTGTGG TTGTGG TTGTGG TTGT
82652372 AAATCTTAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.03, C:0.00, G:0.44, T:0.53
Consensus pattern (6 bp):
TTGTGG
Found at i:82655511 original size:28 final size:28
Alignment explanation
Indices: 82655479--82655533 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
82655469 AGAATAATTC
**
82655479 AATTTTCTCACATGAGCTGTGATATTTG
1 AATTTTCTCACACAAGCTGTGATATTTG
* *
82655507 AATTTTCTCGCACAAGTTGTGATATTT
1 AATTTTCTCACACAAGCTGTGATATTT
82655534 AGGCTGCTCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.44
Consensus pattern (28 bp):
AATTTTCTCACACAAGCTGTGATATTTG
Found at i:82661751 original size:16 final size:15
Alignment explanation
Indices: 82661707--82661761 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
82661697 TAATTTTTAA
*
82661707 CTTTATTTTTGTTAT
1 CTTTATTTTTATTAT
82661722 -TTTGATTGGTTTATT-T
1 CTTT-ATT--TTTATTAT
82661738 -TTTATTTTTATTAT
1 CTTTATTTTTATTAT
82661752 CTTTATTTTT
1 CTTTATTTTT
82661762 GGGAAAATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
13 6 0.18
14 4 0.12
15 15 0.44
16 4 0.12
17 5 0.15
ACGTcount: A:0.15, C:0.04, G:0.07, T:0.75
Consensus pattern (15 bp):
CTTTATTTTTATTAT
Found at i:82662698 original size:20 final size:21
Alignment explanation
Indices: 82662653--82662703 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
82662643 GTCCCTAGGT
* *
82662653 CACACGAGCGTGTGCCTCCTTC
1 CACACGGGCGTGTG-CTCCCTC
82662675 CACACGGGCGTGTG-TCCCTC
1 CACACGGGCGTGTGCTCCCTC
*
82662695 CACATGGGC
1 CACACGGGC
82662704 TTGTTGACCC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 13 0.50
22 13 0.50
ACGTcount: A:0.14, C:0.39, G:0.27, T:0.20
Consensus pattern (21 bp):
CACACGGGCGTGTGCTCCCTC
Found at i:82664585 original size:16 final size:16
Alignment explanation
Indices: 82664554--82664606 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
82664544 GGAATTAGAA
82664554 TTAAGTTGAGAAAATTAT
1 TTAA-TTGA-AAAATTAT
*
82664572 TTAATTGAAAAATTAA
1 TTAATTGAAAAATTAT
82664588 TTAATT--AAAATTAAT
1 TTAATTGAAAAATT-AT
82664603 TTAA
1 TTAA
82664607 GATGTTTATC
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
14 6 0.19
15 5 0.16
16 13 0.41
17 4 0.12
18 4 0.12
ACGTcount: A:0.51, C:0.00, G:0.08, T:0.42
Consensus pattern (16 bp):
TTAATTGAAAAATTAT
Found at i:82671912 original size:28 final size:27
Alignment explanation
Indices: 82671849--82672000 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
82671839 ATATTAAGTC
* *
82671849 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
82671876 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
82671904 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
82671931 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
82671959 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
82671986 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
82672001 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:82671933 original size:55 final size:55
Alignment explanation
Indices: 82671849--82672025 Score: 264
Period size: 55 Copynumber: 3.2 Consensus size: 55
82671839 ATATTAAGTC
* * *
82671849 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
82671904 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * *
82671959 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAA-TCAAACT
82672015 CGCACACTTAG
1 CGCACACTTAG
82672026 CGCCAATCTC
Statistics
Matches: 111, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
55 95 0.86
56 16 0.14
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:82683340 original size:16 final size:15
Alignment explanation
Indices: 82683319--82683352 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
82683309 TTTTTCTAAA
*
82683319 TTTTATTATTTATTAT
1 TTTTATAATTTATT-T
82683335 TTTTATAATTTATTT
1 TTTTATAATTTATTT
82683350 TTT
1 TTT
82683353 CTAATTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTTATAATTTATTT
Found at i:82688665 original size:21 final size:21
Alignment explanation
Indices: 82688641--82688691 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
82688631 CCTTGTTTCT
*
82688641 AATCTCACCGCTACAGTATCC
1 AATCTCACCGCTACAGTAACC
*
82688662 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
82688683 AATCTCACC
1 AATCTCACC
82688692 ACCACCGTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.31, C:0.37, G:0.08, T:0.24
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:82695401 original size:8 final size:8
Alignment explanation
Indices: 82695381--82695461 Score: 67
Period size: 8 Copynumber: 9.6 Consensus size: 8
82695371 TTGAAAAGCA
82695381 TATAAAA-
1 TATAAAAT
82695388 TATAAAAT
1 TATAAAAT
82695396 TATAAAAT
1 TATAAAAT
82695404 TATATAAAT
1 TATA-AAAT
82695413 ATATAAAAGCT
1 -TATAAAA--T
*
82695424 TATAAATT
1 TATAAAAT
*
82695432 TATAAAAA
1 TATAAAAT
*
82695440 TAT-ATAT
1 TATAAAAT
82695447 TATACAAATT
1 TATA-AAA-T
82695457 TATAA
1 TATAA
82695462 CTTATATTAT
Statistics
Matches: 60, Mismatches: 6, Indels: 14
0.75 0.08 0.17
Matches are distributed among these distances:
7 12 0.20
8 22 0.37
9 10 0.17
10 15 0.25
11 1 0.02
ACGTcount: A:0.58, C:0.02, G:0.01, T:0.38
Consensus pattern (8 bp):
TATAAAAT
Found at i:82695410 original size:18 final size:18
Alignment explanation
Indices: 82695387--82695445 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
82695377 AGCATATAAA
*
82695387 ATATAAAATTATAAAATT
1 ATATAAAATTATAAAAAT
*
82695405 ATAT-AAATATATAAAAGCT
1 ATATAAAAT-TATAAAA-AT
*
82695424 -TATAAATTTATAAAAAT
1 ATATAAAATTATAAAAAT
82695441 ATATA
1 ATATA
82695446 TTATACAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
17 5 0.15
18 25 0.74
19 4 0.12
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (18 bp):
ATATAAAATTATAAAAAT
Found at i:82695428 original size:43 final size:43
Alignment explanation
Indices: 82695374--82695461 Score: 106
Period size: 43 Copynumber: 2.0 Consensus size: 43
82695364 TATTATTTTG
* *
82695374 AAAAGCATATAAA-ATATAAAATTATAAAATTATATAAATATAT
1 AAAAGCATATAAATATATAAAAATAT-AAATTATACAAATATAT
* * * *
82695417 AAAAGCTTATAAATTTATAAAAATATATATTATACAAATTTAT
1 AAAAGCATATAAATATATAAAAATATAAATTATACAAATATAT
82695460 AA
1 AA
82695462 CTTATATTAT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
43 28 0.74
44 10 0.26
ACGTcount: A:0.59, C:0.03, G:0.02, T:0.35
Consensus pattern (43 bp):
AAAAGCATATAAATATATAAAAATATAAATTATACAAATATAT
Found at i:82695434 original size:28 final size:26
Alignment explanation
Indices: 82695380--82695445 Score: 89
Period size: 28 Copynumber: 2.5 Consensus size: 26
82695370 TTTGAAAAGC
82695380 ATATAAA-ATATAAAATTATAAAATT
1 ATATAAATATATAAAATTATAAAATT
*
82695405 ATATAAATATATAAAAGCTTATAAATTT
1 ATATAAATATATAAAA--TTATAAAATT
*
82695433 ATAAAAATATATA
1 ATATAAATATATA
82695446 TTATACAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
25 7 0.19
26 8 0.22
28 21 0.58
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (26 bp):
ATATAAATATATAAAATTATAAAATT
Found at i:82697141 original size:11 final size:11
Alignment explanation
Indices: 82697125--82697158 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
82697115 GGTGAGATTA
82697125 GATACTGTAGC
1 GATACTGTAGC
82697136 GATACTGTAGC
1 GATACTGTAGC
*
82697147 GATATTGTAGC
1 GATACTGTAGC
82697158 G
1 G
82697159 TGAGACAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (11 bp):
GATACTGTAGC
Found at i:82697642 original size:11 final size:11
Alignment explanation
Indices: 82697610--82697660 Score: 54
Period size: 11 Copynumber: 4.8 Consensus size: 11
82697600 TTCTAAAAAA
82697610 ATTAAAAA-AT
1 ATTAAAAATAT
*
82697620 A-TATAAAT-T
1 ATTAAAAATAT
82697629 ATTAAAAATAT
1 ATTAAAAATAT
82697640 ATTAAAAATTAT
1 ATTAAAAA-TAT
*
82697652 GTTAAAAAT
1 ATTAAAAAT
82697661 TCAAAAAATT
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
9 7 0.21
10 7 0.21
11 10 0.29
12 10 0.29
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (11 bp):
ATTAAAAATAT
Found at i:82697650 original size:18 final size:18
Alignment explanation
Indices: 82697606--82697650 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
82697596 ACAATTCTAA
82697606 AAAAATTAAAAAATATAT
1 AAAAATTAAAAAATATAT
*
82697624 AAATTATT-AAAAATATATT
1 AAA-AATTAAAAAATATA-T
82697643 AAAAATTA
1 AAAAATTA
82697651 TGTTAAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
18 15 0.68
19 7 0.32
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
AAAAATTAAAAAATATAT
Found at i:82697656 original size:12 final size:12
Alignment explanation
Indices: 82697628--82697661 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
82697618 ATATATAAAT
82697628 TATTAAAAA-TA
1 TATTAAAAATTA
82697639 TATTAAAAATTA
1 TATTAAAAATTA
*
82697651 TGTTAAAAATT
1 TATTAAAAATT
82697662 CAAAAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 9 0.43
12 12 0.57
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (12 bp):
TATTAAAAATTA
Found at i:82702234 original size:19 final size:20
Alignment explanation
Indices: 82702200--82702237 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
82702190 CTCTCATCTC
*
82702200 TTCTCTCGCTGGTTCTTTGT
1 TTCTCTCGCTGCTTCTTTGT
82702220 TTCTCT-GCTGCTTCTTTG
1 TTCTCTCGCTGCTTCTTTG
82702238 ATCCTCTGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.00, C:0.26, G:0.18, T:0.55
Consensus pattern (20 bp):
TTCTCTCGCTGCTTCTTTGT
Found at i:82702244 original size:19 final size:19
Alignment explanation
Indices: 82702202--82702245 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
82702192 CTCATCTCTT
* * *
82702202 CTCTCGCTGGTTCTTTGTTT
1 CTCT-GCTGCTTCTTTGATC
82702222 CTCTGCTGCTTCTTTGATC
1 CTCTGCTGCTTCTTTGATC
82702241 CTCTG
1 CTCTG
82702246 TTGGTGCTGG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.02, C:0.30, G:0.18, T:0.50
Consensus pattern (19 bp):
CTCTGCTGCTTCTTTGATC
Found at i:82704714 original size:46 final size:46
Alignment explanation
Indices: 82704426--82705506 Score: 1953
Period size: 46 Copynumber: 23.7 Consensus size: 46
82704416 GCGAAAACTG
* * *
82704426 CTTATCTGATCAAGTGACAAAGTGATAAATGGTAGC-CTAGTTACA
1 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
* * *
82704471 CTTATCTGATCAAGTGACAAAGTGATAAATGGTAGC-CTAGTTACA
1 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
* * *
82704516 CTTATCTGATCAAGTGACAAAGTGATAAATGGTAGC-CTAGTTACA
1 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
* * *
82704561 CTTATCTGATCAAGTGACAAAGTGATAAGTTGTAGC-CTAGTTACA
1 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
* * *
82704606 CTTATCTAATCAAGTGACAAAGTGATAAGTGGTAGC-CTAGTTACA
1 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
82704651 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
1 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
82704697 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
1 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
82704743 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
1 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
82704789 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
1 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
82704835 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
1 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
82704881 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
1 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
82704927 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
1 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
82704973 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
1 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
82705019 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
1 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
82705065 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
1 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
82705111 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
1 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
82705157 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
1 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
82705203 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
1 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
82705249 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
1 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
82705295 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
1 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
82705341 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
1 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
82705387 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
1 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
*
82705433 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGC-CTAGCTACA
1 CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
*
82705478 CTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 CTTATCTGATCAAGTGACAAAGTGATAAGTG
82705507 ATCATACGCA
Statistics
Matches: 1026, Mismatches: 9, Indels: 4
0.99 0.01 0.00
Matches are distributed among these distances:
43 12 0.01
44 5 0.00
45 230 0.22
46 779 0.76
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Consensus pattern (46 bp):
CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACA
Found at i:82706118 original size:25 final size:25
Alignment explanation
Indices: 82706084--82706135 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
82706074 GGGTGTTACA
82706084 CTGGTTCTTTATTCCTCTGCTGGTG
1 CTGGTTCTTTATTCCTCTGCTGGTG
* *
82706109 CTGGTTCTTTTTTCCTTTGCTGGTG
1 CTGGTTCTTTATTCCTCTGCTGGTG
82706134 CT
1 CT
82706136 TTGTTCCTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.02, C:0.23, G:0.23, T:0.52
Consensus pattern (25 bp):
CTGGTTCTTTATTCCTCTGCTGGTG
Found at i:82706131 original size:19 final size:19
Alignment explanation
Indices: 82706107--82706143 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
82706097 CCTCTGCTGG
* *
82706107 TGCTGGTTCTTTTTTCCTT
1 TGCTGGTGCTTTGTTCCTT
82706126 TGCTGGTGCTTTGTTCCT
1 TGCTGGTGCTTTGTTCCT
82706144 CTTCTCCACC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.00, C:0.22, G:0.22, T:0.57
Consensus pattern (19 bp):
TGCTGGTGCTTTGTTCCTT
Found at i:82708171 original size:14 final size:14
Alignment explanation
Indices: 82708152--82708192 Score: 64
Period size: 16 Copynumber: 2.8 Consensus size: 14
82708142 AATCTGCAGA
82708152 TTAAGAAACAATAT
1 TTAAGAAACAATAT
82708166 TTAAGAAACACAATAT
1 TTAAG-AA-ACAATAT
82708182 TTAAGAAACAA
1 TTAAGAAACAA
82708193 AAGATATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 9 0.36
15 4 0.16
16 12 0.48
ACGTcount: A:0.59, C:0.10, G:0.07, T:0.24
Consensus pattern (14 bp):
TTAAGAAACAATAT
Found at i:82708180 original size:16 final size:16
Alignment explanation
Indices: 82708159--82708191 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
82708149 AGATTAAGAA
82708159 ACAATATTTAAGAAAC
1 ACAATATTTAAGAAAC
82708175 ACAATATTTAAGAAAC
1 ACAATATTTAAGAAAC
82708191 A
1 A
82708192 AAAGATATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.58, C:0.12, G:0.06, T:0.24
Consensus pattern (16 bp):
ACAATATTTAAGAAAC
Found at i:82710195 original size:18 final size:18
Alignment explanation
Indices: 82710172--82710237 Score: 123
Period size: 18 Copynumber: 3.7 Consensus size: 18
82710162 AAAATATGAG
*
82710172 AAATGATGTTCACATTTT
1 AAATGATGTTCACATTTC
82710190 AAATGATGTTCACATTTC
1 AAATGATGTTCACATTTC
82710208 AAATGATGTTCACATTTC
1 AAATGATGTTCACATTTC
82710226 AAATGATGTTCA
1 AAATGATGTTCA
82710238 AATTGATGGA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
18 47 1.00
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (18 bp):
AAATGATGTTCACATTTC
Found at i:82710816 original size:72 final size:72
Alignment explanation
Indices: 82710662--82710834 Score: 242
Period size: 72 Copynumber: 2.4 Consensus size: 72
82710652 AACAACAATG
* * * *
82710662 CTAAACTAGTTTTATCAATAGTTATTTATGTTTGGTTTTTGGATATTGAATTTATATTCTACTTA
1 CTAAATTAGTTTTATCAATAGTTGTTTATGTTTGGTCTTTAGATATTGAATTTATATTCTACTTA
82710727 TTTATGT
66 TTTATGT
* * *
82710734 GT-AATCTAGTTTTATTAAAAGTTGTTTATGTTTGGTCTTTAGATATTGAATTTATATTCTACTT
1 CTAAAT-TAGTTTTATCAATAGTTGTTTATGTTTGGTCTTTAGATATTGAATTTATATTCTACTT
*
82710798 ATTT-TTT
65 ATTTATGT
82710805 ACTAAATTAGTTTTATCAATAGTTGTTTAT
1 -CTAAATTAGTTTTATCAATAGTTGTTTAT
82710835 ATGTGATTTT
Statistics
Matches: 87, Mismatches: 11, Indels: 6
0.84 0.11 0.06
Matches are distributed among these distances:
71 4 0.05
72 80 0.92
73 3 0.03
ACGTcount: A:0.27, C:0.06, G:0.12, T:0.54
Consensus pattern (72 bp):
CTAAATTAGTTTTATCAATAGTTGTTTATGTTTGGTCTTTAGATATTGAATTTATATTCTACTTA
TTTATGT
Found at i:82712911 original size:13 final size:13
Alignment explanation
Indices: 82712890--82712953 Score: 83
Period size: 13 Copynumber: 4.9 Consensus size: 13
82712880 ACACTCAAAA
82712890 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
* *
82712903 TTCTCAAAAGTAC
1 TTTTCAAAAGCAC
* *
82712916 TTTTCCACAGCAC
1 TTTTCAAAAGCAC
*
82712929 TTTTCAAAAGTAC
1 TTTTCAAAAGCAC
82712942 TTTTCAAAAGCA
1 TTTTCAAAAGCA
82712954 ATGAAGAACT
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
13 41 1.00
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.33
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:82712919 original size:26 final size:26
Alignment explanation
Indices: 82712890--82712953 Score: 101
Period size: 26 Copynumber: 2.5 Consensus size: 26
82712880 ACACTCAAAA
82712890 TTTTCAAAAGCACTTCTCAAAAGTAC
1 TTTTCAAAAGCACTTCTCAAAAGTAC
* * *
82712916 TTTTCCACAGCACTTTTCAAAAGTAC
1 TTTTCAAAAGCACTTCTCAAAAGTAC
82712942 TTTTCAAAAGCA
1 TTTTCAAAAGCA
82712954 ATGAAGAACT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.33
Consensus pattern (26 bp):
TTTTCAAAAGCACTTCTCAAAAGTAC
Found at i:82721593 original size:11 final size:10
Alignment explanation
Indices: 82721577--82721611 Score: 52
Period size: 11 Copynumber: 3.3 Consensus size: 10
82721567 AATTGTGAAG
82721577 ATAAAATAATA
1 ATAAAATAA-A
82721588 ATAAAATAAA
1 ATAAAATAAA
82721598 ATATAAATAAA
1 ATA-AAATAAA
82721609 ATA
1 ATA
82721612 TGTACATGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 4 0.17
11 19 0.83
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (10 bp):
ATAAAATAAA
Found at i:82721595 original size:5 final size:5
Alignment explanation
Indices: 82721577--82721611 Score: 52
Period size: 5 Copynumber: 6.6 Consensus size: 5
82721567 AATTGTGAAG
82721577 ATAAA ATAATA ATAAA ATAAA ATATAA ATAAA ATA
1 ATAAA ATAA-A ATAAA ATAAA ATA-AA ATAAA ATA
82721612 TGTACATGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 18 0.64
6 10 0.36
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (5 bp):
ATAAA
Found at i:82721598 original size:16 final size:16
Alignment explanation
Indices: 82721577--82721611 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
82721567 AATTGTGAAG
82721577 ATAAAATA-ATAATAAA
1 ATAAAATATA-AATAAA
82721593 ATAAAATATAAATAAA
1 ATAAAATATAAATAAA
82721609 ATA
1 ATA
82721612 TGTACATGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 17 0.94
17 1 0.06
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (16 bp):
ATAAAATATAAATAAA
Found at i:82723108 original size:44 final size:44
Alignment explanation
Indices: 82723053--82723161 Score: 130
Period size: 44 Copynumber: 2.5 Consensus size: 44
82723043 GATCTGTTCT
*
82723053 ACTGCAACTTCAGAGAGATAAGATCTA-TCACTTTAATCCGCTCC
1 ACTGCAACTTCAGAGAGATAAGAT-TATTCACTTTAATCCACTCC
* * ** *
82723097 ACTGTAACTTCAGAGAGATAGGATTATTGGCTTTAATCTACTCC
1 ACTGCAACTTCAGAGAGATAAGATTATTCACTTTAATCCACTCC
* *
82723141 ACTGCAATTTCAGGGAGATAA
1 ACTGCAACTTCAGAGAGATAA
82723162 TATTTGCCGT
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
43 2 0.04
44 52 0.96
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.29
Consensus pattern (44 bp):
ACTGCAACTTCAGAGAGATAAGATTATTCACTTTAATCCACTCC
Found at i:82723220 original size:45 final size:45
Alignment explanation
Indices: 82723133--82723254 Score: 109
Period size: 45 Copynumber: 2.7 Consensus size: 45
82723123 TTGGCTTTAA
* * * ** *
82723133 TCTACTCCACTGCAATTTCAGGGAGATAATATTTGCCGTCTTCAG
1 TCTACTCCACTGCAACTTCAGGAAGATAAGACCTGCCATCTTCAG
* * *
82723178 TCTACTCCGCTGCAACTTCAGGAAGATAAGACCTGCTATCTTCAA
1 TCTACTCCACTGCAACTTCAGGAAGATAAGACCTGCCATCTTCAG
** * * * *
82723223 TCCGCTCCAATACAACTTTAGGGAGATAAGAC
1 TCTACTCCACTGCAACTTCAGGAAGATAAGAC
82723255 TGGATGCAAT
Statistics
Matches: 61, Mismatches: 16, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
45 61 1.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (45 bp):
TCTACTCCACTGCAACTTCAGGAAGATAAGACCTGCCATCTTCAG
Found at i:82723318 original size:45 final size:45
Alignment explanation
Indices: 82723263--82723395 Score: 194
Period size: 45 Copynumber: 3.0 Consensus size: 45
82723253 ACTGGATGCA
* * * * *
82723263 ATCTTCGATCTTCTTCGTTGCCAATATAGGAAGACAAGATTTGCT
1 ATCTTTGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* *
82723308 ATCTTTGATCTACTTCGCTACCAATACAGGAAGATAAGATCTGCT
1 ATCTTTGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
*
82723353 ATCCTTGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTG
1 ATCTTTGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTG
82723396 TTTCGCTGCC
Statistics
Matches: 78, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 78 1.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (45 bp):
ATCTTTGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
Found at i:82723401 original size:31 final size:31
Alignment explanation
Indices: 82723366--82723426 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
82723356 CTTGATCTAC
82723366 TTCGCTGCCAATACAGGAAGACAAGATCTGT
1 TTCGCTGCCAATACAGGAAGACAAGATCTGT
82723397 TTCGCTGCCAATACAGGAAGACAAGATCTG
1 TTCGCTGCCAATACAGGAAGACAAGATCTG
82723427 CTATCTTCGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.21
Consensus pattern (31 bp):
TTCGCTGCCAATACAGGAAGACAAGATCTGT
Found at i:82723414 original size:76 final size:76
Alignment explanation
Indices: 82723321--82723546 Score: 355
Period size: 76 Copynumber: 3.0 Consensus size: 76
82723311 TTTGATCTAC
* * * *
82723321 TTCGCTACCAATACAGGAAGATAAGATCTGCTATCCTT-GATCTACTTCGCTGCCAATACAGGAA
1 TTCGCTGCCAATACAGGAAGACAAGATCTGCTAT-CTTCGATCTACTTCGCTACCAATATAGGAA
82723385 GACAAGATCTGT
65 GACAAGATCTGT
*
82723397 TTCGCTGCCAATACAGGAAGACAAGATCTGCTATCTTCGATCTATTTCGCTACCAATATAGGAAG
1 TTCGCTGCCAATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCTACCAATATAGGAAG
82723462 ACAAGATCTGT
66 ACAAGATCTGT
* * * *
82723473 TTCGCTGCTAATACAGGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAAGAAG
1 TTCGCTGCCAATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCTACCAATATAGGAAG
82723538 ACAAGATCT
66 ACAAGATCT
82723547 ATTATCTTCG
Statistics
Matches: 139, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
75 3 0.02
76 136 0.98
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (76 bp):
TTCGCTGCCAATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCTACCAATATAGGAAG
ACAAGATCTGT
Found at i:82723476 original size:31 final size:31
Alignment explanation
Indices: 82723435--82723504 Score: 104
Period size: 31 Copynumber: 2.3 Consensus size: 31
82723425 TGCTATCTTC
* *
82723435 GATCTATTTCGCTACCAATATAGGAAGACAA
1 GATCTGTTTCGCTACCAATACAGGAAGACAA
* *
82723466 GATCTGTTTCGCTGCTAATACAGGAAGACAA
1 GATCTGTTTCGCTACCAATACAGGAAGACAA
82723497 GATCTGTT
1 GATCTGTT
82723505 ATCTTCGATC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.29
Consensus pattern (31 bp):
GATCTGTTTCGCTACCAATACAGGAAGACAA
Found at i:82723515 original size:45 final size:45
Alignment explanation
Indices: 82723489--82724221 Score: 612
Period size: 45 Copynumber: 15.8 Consensus size: 45
82723479 GCTAATACAG
*
82723489 GAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAA
1 GAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAATATAA
82723534 GAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAATATAA
1 GAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAATATAA
82723579 GAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAATATAA
1 GAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAATATAA
82723624 GAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAATATAA
1 GAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAATATAA
*** * * *
82723669 GAAGACAAGATCTATTTATAAGAAGACAAGATCTGTTATCTTCGA-T-CTACT-TCA
1 GAAGACAAGATCTA-TTAT----CTTC--GATC---TA-CTTC-ACTACCAATATAA
** * ** * ** * * *
82723723 CTA-CCATTAT-AAGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAA
1 GAAGACAAGATCTATTA-TC---TTC-G--ATC-T--A-CT-T--CACTACCAATATAA
*
82723780 GAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAATATAG
1 GAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAATATAA
* ** * ** ** * * *
82723825 GAAGACCAGATCTGCTATTTTAAATCTACTTCGTTGCCAATACAG
1 GAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAATATAA
* *
82723870 GAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAG
1 GAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAATATAA
** * ** * *
82723915 GAAGACAAGATCTGCTATCTTTGATCTACTTCGTTGCCAATACAA
1 GAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAATATAA
* *
82723960 GAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAG
1 GAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAATATAA
** * ** * *
82724005 GAAGACAAGATCTGCTATCTTTGATCTACTTCGTTGCCAATACAA
1 GAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAATATAA
* *
82724050 GAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAG
1 GAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAATATAA
** * ** * *
82724095 GAAGACAAGATCTGCTATCTTTGATCTACTTCGTTGCCAATACAA
1 GAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAATATAA
* * *
82724140 GAAGACAAGATCTGTTATCTTCGATCTACTTCGCTACCAATATAG
1 GAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAATATAA
** * * *
82724185 GAAGACAAGATCTGCTATCTTCAACCTGCTTCACTAC
1 GAAGACAAGATCTATTATCTTCGATCTACTTCACTAC
82724222 TGCTCAAAGA
Statistics
Matches: 559, Mismatches: 101, Indels: 56
0.78 0.14 0.08
Matches are distributed among these distances:
45 493 0.88
46 4 0.01
48 2 0.00
49 1 0.00
50 4 0.01
51 3 0.01
52 15 0.03
53 4 0.01
54 5 0.01
55 9 0.02
56 8 0.01
57 4 0.01
58 5 0.01
59 2 0.00
ACGTcount: A:0.34, C:0.22, G:0.13, T:0.31
Consensus pattern (45 bp):
GAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAATATAA
Found at i:82723603 original size:90 final size:90
Alignment explanation
Indices: 82723482--82724221 Score: 725
Period size: 90 Copynumber: 8.0 Consensus size: 90
82723472 TTTCGCTGCT
* *
82723482 AATACAGGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAAGAAGACAAGATCT
1 AATACAAGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAGGAAGACAAGATCT
**
82723547 ATTATCTTCGATCTACTTCACTACC
66 GCTATCTTCGATCTACTTCACTACC
* * *
82723572 AATATAAGAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAATATAAGAAGACAAGATCT
1 AATACAAGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAGGAAGACAAGATCT
**
82723637 ATTATCTTCGATCTACTTCACTACC
66 GCTATCTTCGATCTACTTCACTACC
* * *** * * *
82723662 AATATAAGAAGACAAGATCTATTTATAAGAAGACAAGATCTGTTATCTTCGA-T-CTACT-TCAC
1 AATACAAGAAGACAAGATCT-GTTAT----CTTC--GATC---TA-CTTC-ACTACCAATAT-AG
* ** * *** *** *
82723724 TACCATTATA-AGAAGAC-AAGATCTGTTATCTTCGATCTACTTCACTACC
53 GAAGA-CA-AGATCTG-CTATCTTC-G--ATC-T--A-CT-T--CACTACC
* * *
82723773 AATATAAGAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAATATAGGAAGACCAGATCT
1 AATACAAGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAGGAAGACAAGATCT
* ** ** *
82723838 GCTATTTTAAATCTACTTCGTTGCC
66 GCTATCTTCGATCTACTTCACTACC
*
82723863 AATACAGGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAGGAAGACAAGATCT
1 AATACAAGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAGGAAGACAAGATCT
* ** *
82723928 GCTATCTTTGATCTACTTCGTTGCC
66 GCTATCTTCGATCTACTTCACTACC
82723953 AATACAAGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAGGAAGACAAGATCT
1 AATACAAGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAGGAAGACAAGATCT
* ** *
82724018 GCTATCTTTGATCTACTTCGTTGCC
66 GCTATCTTCGATCTACTTCACTACC
82724043 AATACAAGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAGGAAGACAAGATCT
1 AATACAAGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAGGAAGACAAGATCT
* ** *
82724108 GCTATCTTTGATCTACTTCGTTGCC
66 GCTATCTTCGATCTACTTCACTACC
*
82724133 AATACAAGAAGACAAGATCTGTTATCTTCGATCTACTTCGCTACCAATATAGGAAGACAAGATCT
1 AATACAAGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAGGAAGACAAGATCT
* * *
82724198 GCTATCTTCAACCTGCTTCACTAC
66 GCTATCTTCGATCTACTTCACTAC
82724222 TGCTCAAAGA
Statistics
Matches: 556, Mismatches: 63, Indels: 62
0.82 0.09 0.09
Matches are distributed among these distances:
90 454 0.82
91 4 0.01
93 2 0.00
94 1 0.00
95 1 0.00
96 1 0.00
97 7 0.01
99 4 0.01
100 17 0.03
101 18 0.03
102 4 0.01
104 7 0.01
105 1 0.00
106 1 0.00
107 1 0.00
108 2 0.00
110 4 0.01
111 27 0.05
ACGTcount: A:0.34, C:0.22, G:0.13, T:0.31
Consensus pattern (90 bp):
AATACAAGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAGGAAGACAAGATCT
GCTATCTTCGATCTACTTCACTACC
Found at i:82723670 original size:135 final size:135
Alignment explanation
Indices: 82723489--82724221 Score: 863
Period size: 135 Copynumber: 5.3 Consensus size: 135
82723479 GCTAATACAG
*
82723489 GAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAAGAAGACAAGATCTATTATCT
1 GAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAAGAAGACAAGATCTGTTATCT
*
82723554 TCGATCTACTTCACTACCAATATAAGAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAA
66 TCGATCTACTTCACTACCAATATAAGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAA
82723619 TATAA
131 TATAA
* *
82723624 GAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAATATAAGAAGACAAGATCTATTTATA
1 GAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAAGAAGACAAGATCT-GTTAT-
***
82723689 AGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCATTATAAGAAGACAAGATCTGTTATC
64 ---CTTC--GATC---TA-CTTC-A-CTA---C-C-A--A-TATAAGAAGACAAGATCTGTTATC
82723754 TTCGATCTACTTCACTACCAATATAA
110 TTCGATCTACTTCACTACCAATATAA
* * * * *
82723780 GAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAATATAGGAAGACCAGATCTGCTATTT
1 GAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAAGAAGACAAGATCTGTTATCT
** ** * * *
82723845 TAAATCTACTTCGTTGCCAATACAGGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAA
66 TCGATCTACTTCACTACCAATATAAGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAA
*
82723910 TATAG
131 TATAA
* * ** * *
82723915 GAAGACAAGATCTGCTATCTTTGATCTACTTCGTTGCCAATACAAGAAGACAAGATCTGTTATCT
1 GAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAAGAAGACAAGATCTGTTATCT
* * * ** *
82723980 TCGATCTACTTCACTACCAATATAGGAAGACAAGATCTGCTATCTTTGATCTACTTCGTTGCCAA
66 TCGATCTACTTCACTACCAATATAAGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAA
*
82724045 TACAA
131 TATAA
* *
82724050 GAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAGGAAGACAAGATCTGCTATCT
1 GAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAAGAAGACAAGATCTGTTATCT
* ** * * *
82724115 TTGATCTACTTCGTTGCCAATACAAGAAGACAAGATCTGTTATCTTCGATCTACTTCGCTACCAA
66 TCGATCTACTTCACTACCAATATAAGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAA
*
82724180 TATAG
131 TATAA
* * * *
82724185 GAAGACAAGATCTGCTATCTTCAACCTGCTTCACTAC
1 GAAGACAAGATCTGTTATCTTCGATCTACTTCACTAC
82724222 TGCTCAAAGA
Statistics
Matches: 508, Mismatches: 69, Indels: 42
0.82 0.11 0.07
Matches are distributed among these distances:
135 363 0.71
136 5 0.01
138 1 0.00
139 1 0.00
140 2 0.00
142 4 0.01
143 1 0.00
145 6 0.01
146 6 0.01
147 1 0.00
148 3 0.01
149 3 0.01
151 1 0.00
152 1 0.00
153 1 0.00
155 4 0.01
156 105 0.21
ACGTcount: A:0.34, C:0.22, G:0.13, T:0.31
Consensus pattern (135 bp):
GAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAAGAAGACAAGATCTGTTATCT
TCGATCTACTTCACTACCAATATAAGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAA
TATAA
Found at i:82723725 original size:66 final size:66
Alignment explanation
Indices: 82723619--82723747 Score: 240
Period size: 66 Copynumber: 2.0 Consensus size: 66
82723609 TCACTACCAA
82723619 TATAAGAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAATATAAGAAGACAAGATCTAT
1 TATAAGAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAATATAAGAAGACAAGATCTAT
82723684 T
66 T
* *
82723685 TATAAGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCATTATAAGAAGACAAGATCT
1 TATAAGAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAATATAAGAAGACAAGATCT
82723748 GTTATCTTCG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 61 1.00
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.30
Consensus pattern (66 bp):
TATAAGAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAATATAAGAAGACAAGATCTAT
T
Found at i:82723740 original size:201 final size:206
Alignment explanation
Indices: 82723404--82724107 Score: 842
Period size: 201 Copynumber: 3.3 Consensus size: 206
82723394 TGTTTCGCTG
* *
82723404 CCAATACAGGAAGACAAGATCTGCTATCTTCGATCTATTTCGCTACCAATATAGGAAGACAAGAT
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCTACCAATATAGGAAGACAAGAT
*
82723469 CTGTTTCGCTGCTAATACAGGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAA
66 C--TAT--CT-CTAATACAGGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAA
82723534 GAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAATATAAGAAGACAAGATCTATTATCT
126 GAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAATATAAGAAGACAAGATCTATTATCT
82723599 TCGATCTACTTCACTA
191 TCGATCTACTTCACTA
* ** * *
82723615 CCAATATAAGAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAATATAAGAAGACAAGAT
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCTACCAATATAGGAAGACAAGAT
*
82723680 CTAT-T-T-ATA-A-GAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCATTATAAGAAGA
66 CTATCTCTAATACAGGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAAGAAGA
*
82723740 CAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAAGAAGACAAGATCTATTATCTTCGAT
131 CAAGATCTATTATCTTCGATCTACTTCACTACCAATATAAGAAGACAAGATCTATTATCTTCGAT
82723805 CTACTTCACTA
196 CTACTTCACTA
* * ** * * *
82723816 CCAATATAGGAAGACCAGATCTGCTATTTTAAATCTACTTCGTTGCCAATACAGGAAGACAAGAT
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCTACCAATATAGGAAGACAAGAT
* *
82723881 CTGTTATCTTCGATCTACTTCACTACCAATATAGGAAGACAAGATCTGCTATCTTTGATCTACTT
66 C---TA---TC--TCTA----A-TA-C-----AGGAAGACAAGATCTGTTATCTTCGATCTACTT
** * * * *
82723946 CGTTGCCAATACAAGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAGGAAGAC
112 CACTACCAATATAAGAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAATATAAGAAGAC
** * ** *
82724011 AAGATCTGCTATCTTTGATCTACTTCGTTG
177 AAGATCTATTATCTTCGATCTACTTCACTA
* * * *
82724041 CCAATACAAGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAGGAAGACAAGAT
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCTACCAATATAGGAAGACAAGAT
82724106 CT
66 CT
82724108 GCTATCTTTG
Statistics
Matches: 422, Mismatches: 47, Indels: 37
0.83 0.09 0.07
Matches are distributed among these distances:
201 178 0.42
202 1 0.00
203 3 0.01
204 3 0.01
206 1 0.00
207 1 0.00
209 2 0.00
210 1 0.00
211 60 0.14
216 1 0.00
217 2 0.00
222 1 0.00
224 1 0.00
225 167 0.40
ACGTcount: A:0.35, C:0.22, G:0.13, T:0.30
Consensus pattern (206 bp):
CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCTACCAATATAGGAAGACAAGAT
CTATCTCTAATACAGGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAAGAAGA
CAAGATCTATTATCTTCGATCTACTTCACTACCAATATAAGAAGACAAGATCTATTATCTTCGAT
CTACTTCACTA
Found at i:82723768 original size:111 final size:111
Alignment explanation
Indices: 82723574--82723795 Score: 417
Period size: 111 Copynumber: 2.0 Consensus size: 111
82723564 TCACTACCAA
82723574 TATAAGAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAATATAAGAAGACAAGATCTAT
1 TATAAGAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAATATAAGAAGACAAGATCTAT
82723639 TATCTTCGATCTACTTCACTACCAATATAAGAAGACAAGATCTATT
66 TATCTTCGATCTACTTCACTACCAATATAAGAAGACAAGATCTATT
* * *
82723685 TATAAGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCATTATAAGAAGACAAGATCTGT
1 TATAAGAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAATATAAGAAGACAAGATCTAT
82723750 TATCTTCGATCTACTTCACTACCAATATAAGAAGACAAGATCTATT
66 TATCTTCGATCTACTTCACTACCAATATAAGAAGACAAGATCTATT
82723796 ATCTTCGATC
Statistics
Matches: 108, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
111 108 1.00
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (111 bp):
TATAAGAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAATATAAGAAGACAAGATCTAT
TATCTTCGATCTACTTCACTACCAATATAAGAAGACAAGATCTATT
Found at i:82723813 original size:156 final size:156
Alignment explanation
Indices: 82723529--82723837 Score: 573
Period size: 156 Copynumber: 2.0 Consensus size: 156
82723519 TCACTACCAA
82723529 TATAAGAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAATATAAGAAGACAAGATCTAT
1 TATAAGAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAATATAAGAAGACAAGATCTAT
82723594 TATCTTCGATCTACTTCACTACCAATATAAGAAGACAAGATCTATTATCTTCGATCTACTTCACT
66 TATCTTCGATCTACTTCACTACCAATATAAGAAGACAAGATCTATTATCTTCGATCTACTTCACT
82723659 ACCAATATAAGAAGACAAGATCTATT
131 ACCAATATAAGAAGACAAGATCTATT
* * *
82723685 TATAAGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCATTATAAGAAGACAAGATCTGT
1 TATAAGAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAATATAAGAAGACAAGATCTAT
82723750 TATCTTCGATCTACTTCACTACCAATATAAGAAGACAAGATCTATTATCTTCGATCTACTTCACT
66 TATCTTCGATCTACTTCACTACCAATATAAGAAGACAAGATCTATTATCTTCGATCTACTTCACT
* *
82723815 ACCAATATAGGAAGACCAGATCT
131 ACCAATATAAGAAGACAAGATCT
82723838 GCTATTTTAA
Statistics
Matches: 148, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
156 148 1.00
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.31
Consensus pattern (156 bp):
TATAAGAAGACAAGATCTATTATCTTCGATCTACTTCACTACCAATATAAGAAGACAAGATCTAT
TATCTTCGATCTACTTCACTACCAATATAAGAAGACAAGATCTATTATCTTCGATCTACTTCACT
ACCAATATAAGAAGACAAGATCTATT
Found at i:82723992 original size:180 final size:180
Alignment explanation
Indices: 82723688--82724205 Score: 903
Period size: 180 Copynumber: 2.9 Consensus size: 180
82723678 ATCTATTTAT
* * *
82723688 AAGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCATTATAAGAAGACAAGATCTGTTAT
1 AAGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAGGAAGACAAGATCTGCTAT
* ** * * *
82723753 CTTCGATCTACTTCACTACCAATATAAGAAGACAAGATCTATTATCTTCGATCTACTTCACTACC
66 CTTTGATCTACTTCGTTGCCAATACAAGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACC
*
82723818 AATATAGGAAGACCAGATCTGCTAT-TTTAAATCTACTTCGTTGCCAATAC
131 AATATAGGAAGACAAGATCTGCTATCTTT-AATCTACTTCGTTGCCAATAC
*
82723868 AGGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAGGAAGACAAGATCTGCTAT
1 AAGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAGGAAGACAAGATCTGCTAT
82723933 CTTTGATCTACTTCGTTGCCAATACAAGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACC
66 CTTTGATCTACTTCGTTGCCAATACAAGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACC
*
82723998 AATATAGGAAGACAAGATCTGCTATCTTTGATCTACTTCGTTGCCAATAC
131 AATATAGGAAGACAAGATCTGCTATCTTTAATCTACTTCGTTGCCAATAC
82724048 AAGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAGGAAGACAAGATCTGCTAT
1 AAGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAGGAAGACAAGATCTGCTAT
*
82724113 CTTTGATCTACTTCGTTGCCAATACAAGAAGACAAGATCTGTTATCTTCGATCTACTTCGCTACC
66 CTTTGATCTACTTCGTTGCCAATACAAGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACC
82724178 AATATAGGAAGACAAGATCTGCTATCTT
131 AATATAGGAAGACAAGATCTGCTATCTT
82724206 CAACCTGCTT
Statistics
Matches: 323, Mismatches: 14, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
180 320 0.99
181 3 0.01
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.31
Consensus pattern (180 bp):
AAGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACCAATATAGGAAGACAAGATCTGCTAT
CTTTGATCTACTTCGTTGCCAATACAAGAAGACAAGATCTGTTATCTTCGATCTACTTCACTACC
AATATAGGAAGACAAGATCTGCTATCTTTAATCTACTTCGTTGCCAATAC
Found at i:82725513 original size:5 final size:5
Alignment explanation
Indices: 82725505--82725538 Score: 52
Period size: 5 Copynumber: 7.0 Consensus size: 5
82725495 CTCTCCTCTC
*
82725505 CTTTT CTTTT CTTTT -TTTC CTTTT CTTTT CTTTT
1 CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT
82725539 TCCATCATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
4 3 0.12
5 23 0.88
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (5 bp):
CTTTT
Found at i:82725527 original size:19 final size:19
Alignment explanation
Indices: 82725503--82725539 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
82725493 GCCTCTCCTC
82725503 TCCTTTTCTTTTCTTTTTT
1 TCCTTTTCTTTTCTTTTTT
82725522 TCCTTTTCTTTTCTTTTT
1 TCCTTTTCTTTTCTTTTT
82725540 CCATCATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (19 bp):
TCCTTTTCTTTTCTTTTTT
Found at i:82727407 original size:16 final size:17
Alignment explanation
Indices: 82727375--82727408 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
82727365 TCTATCAAGA
82727375 ACTATATCTGTTACATG
1 ACTATATCTGTTACATG
*
82727392 ACTATAT-TGTTTCATG
1 ACTATATCTGTTACATG
82727408 A
1 A
82727409 ACGCTTGCGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.44
Consensus pattern (17 bp):
ACTATATCTGTTACATG
Found at i:82728772 original size:16 final size:16
Alignment explanation
Indices: 82728747--82728780 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
82728737 TTCTATAATG
* *
82728747 AAATGTCATGCAGTCA
1 AAATGCCATGCAGCCA
82728763 AAATGCCATGCAGCCA
1 AAATGCCATGCAGCCA
82728779 AA
1 AA
82728781 GCAAAATAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.41, C:0.24, G:0.18, T:0.18
Consensus pattern (16 bp):
AAATGCCATGCAGCCA
Found at i:82742601 original size:12 final size:12
Alignment explanation
Indices: 82742570--82742602 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
82742560 AATGAGCAAG
82742570 CCACTGCCACTA
1 CCACTGCCACTA
82742582 CCGA-TGCCACTA
1 CC-ACTGCCACTA
82742594 CCACTGCCA
1 CCACTGCCA
82742603 TTGCTACTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 1 0.05
12 17 0.89
13 1 0.05
ACGTcount: A:0.24, C:0.48, G:0.12, T:0.15
Consensus pattern (12 bp):
CCACTGCCACTA
Found at i:82746488 original size:22 final size:25
Alignment explanation
Indices: 82746463--82746513 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 25
82746453 ACAGCGTCAT
82746463 TTTTCAAA-CC-AAATAAAACCCC-
1 TTTTCAAACCCTAAATAAAACCCCA
*
82746485 TTTTCAAACCCTAAATGAAACCCCA
1 TTTTCAAACCCTAAATAAAACCCCA
82746510 TTTT
1 TTTT
82746514 ACTTGCAACC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
22 8 0.32
23 2 0.08
24 11 0.44
25 4 0.16
ACGTcount: A:0.39, C:0.29, G:0.02, T:0.29
Consensus pattern (25 bp):
TTTTCAAACCCTAAATAAAACCCCA
Found at i:82747837 original size:85 final size:84
Alignment explanation
Indices: 82747738--82747895 Score: 201
Period size: 83 Copynumber: 1.9 Consensus size: 84
82747728 GTTTGGTTTA
*
82747738 TTCAGTCTGCTCCACTACAATTTCAAGGAAATAAGACAAAATGTGATCTGCTCT-CTACAACTTG
1 TTCAGTCTGCTCCACTACAA--TCAAGGAAATAAGACAAAATGCGATCTGCTCTACTACAACTTG
82747802 AGAGAGATAAAACTTGCTATC
64 AGAGAGATAAAACTTGCTATC
* * * * *** * *
82747823 TTCAGTCTTCTCCACTGCAATCAGGGAGATAAGACTTGATGCGATCTGCTCTACTGCAACTTTAG
1 TTCAGTCTGCTCCACTACAATCAAGGAAATAAGACAAAATGCGATCTGCTCTACTACAACTTGAG
82747888 AGAGATAA
66 AGAGATAA
82747896 GATCCGTCAT
Statistics
Matches: 62, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
83 26 0.42
84 18 0.29
85 18 0.29
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (84 bp):
TTCAGTCTGCTCCACTACAATCAAGGAAATAAGACAAAATGCGATCTGCTCTACTACAACTTGAG
AGAGATAAAACTTGCTATC
Found at i:82747976 original size:45 final size:45
Alignment explanation
Indices: 82747795--82748271 Score: 452
Period size: 45 Copynumber: 10.8 Consensus size: 45
82747785 CTGCTCTCTA
* * * * **
82747795 CAACTTGAGAGAGATAAAACTTGCTATCTTCAGTCTTCTCCACTG
1 CAACTTCAGGGAGATAAGACTTGCTATCTTCAATCCACTCCACTG
* * ** *
82747840 CAA--TCAGGGAGATAAGACTTG--A--TGCGATCTGCTCTACTG
1 CAACTTCAGGGAGATAAGACTTGCTATCTTCAATCCACTCCACTG
* * * * * *
82747879 CAACTTTAGAGAGATAAGA--TCCGTCATTTTTAATCCACTCTACTG
1 CAACTTCAGGGAGATAAGACTTGC-T-ATCTTCAATCCACTCCACTG
* * * * ** *
82747924 CCACTTCAGGGAGATAGGATTTGCTATCTTCAGTCTGCTCCGCTG
1 CAACTTCAGGGAGATAAGACTTGCTATCTTCAATCCACTCCACTG
82747969 CAACTTCAGGGAGATAAGACTTGCTATCTTCAATCCACTCCACTG
1 CAACTTCAGGGAGATAAGACTTGCTATCTTCAATCCACTCCACTG
*
82748014 CAACTTCAGGGAGATAAGACTTGCTATTTTCAATCCACTCCACTG
1 CAACTTCAGGGAGATAAGACTTGCTATCTTCAATCCACTCCACTG
* * ** **
82748059 CAACTTCAGGGAGAT-AGAATTTGCTATCTTCAGTCTGCTCTGCTG
1 CAACTTCAGGGAGATAAG-ACTTGCTATCTTCAATCCACTCCACTG
* * *
82748104 CAAATTCAGGGAGATAAGACTTGCTATCTTCAATGCACTCCACTA
1 CAACTTCAGGGAGATAAGACTTGCTATCTTCAATCCACTCCACTG
* * * * * * *
82748149 TAACTTTAGGGAGATAGGATTTGCTATCTTCAGTCTACTCCGCTG
1 CAACTTCAGGGAGATAAGACTTGCTATCTTCAATCCACTCCACTG
*
82748194 CAACTTCAGGGAGATAAGACTTGTTATCTTCAATCCACT-CACTG
1 CAACTTCAGGGAGATAAGACTTGCTATCTTCAATCCACTCCACTG
* * *
82748238 CAACTTCAGGGAGATAGGATTTGCAATCTTCAAT
1 CAACTTCAGGGAGATAAGACTTGCTATCTTCAAT
82748272 GATCTGTTCT
Statistics
Matches: 346, Mismatches: 74, Indels: 25
0.78 0.17 0.06
Matches are distributed among these distances:
39 16 0.05
41 13 0.04
43 16 0.05
44 36 0.10
45 260 0.75
46 3 0.01
47 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (45 bp):
CAACTTCAGGGAGATAAGACTTGCTATCTTCAATCCACTCCACTG
Found at i:82748049 original size:135 final size:134
Alignment explanation
Indices: 82747815--82748271 Score: 516
Period size: 135 Copynumber: 3.4 Consensus size: 134
82747805 GAGATAAAAC
* * * **
82747815 TTGCTATCTTCAGTCTTCTCCACTGCAA--TCAGGGAGATAAGACTTG--A--TGCGATCTGCTC
1 TTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTATCTTCAATCCACTC
* * * * * *
82747874 TACTGCAACTTTAGAGAGATAAGA-TCCGTCATTTTTAATCCACTCTACTGCCACTTCAGGGAGA
66 CACTGCAACTTTAGGGAGATAAGATTGC-T-ATTTTCAATCCACTCCACTGCAACTTCAGGGAGA
82747938 TAGGAT
129 TAGGAT
*
82747944 TTGCTATCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGACTTGCTATCTTCAATCCACTC
1 TTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTATCTTCAATCCACTC
*
82748009 CACTGCAACTTCAGGGAGATAAGACTTGCTATTTTCAATCCACTCCACTGCAACTTCAGGGAGAT
66 CACTGCAACTTTAGGGAGATAAGA-TTGCTATTTTCAATCCACTCCACTGCAACTTCAGGGAGAT
*
82748074 AGAAT
130 AGGAT
** * *
82748079 TTGCTATCTTCAGTCTGCTCTGCTGCAAATTCAGGGAGATAAGACTTGCTATCTTCAATGCACTC
1 TTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTATCTTCAATCCACTC
** * * * * *
82748144 CACTATAACTTTAGGGAGATAGGATTTGCTATCTTCAGTCTACTCCGCTGCAACTTCAGGGAGAT
66 CACTGCAACTTTAGGGAGATAAGA-TTGCTATTTTCAATCCACTCCACTGCAACTTCAGGGAGAT
* *
82748209 AAGAC
130 AGGAT
* * ** * * *
82748214 TTGTTATCTTCAATCCACT-CACTGCAACTTCAGGGAGATAGGATTTGCAATCTTCAAT
1 TTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTATCTTCAAT
82748272 GATCTGTTCT
Statistics
Matches: 281, Mismatches: 39, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
129 26 0.09
131 18 0.06
133 1 0.00
134 33 0.12
135 200 0.71
136 1 0.00
137 2 0.01
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (134 bp):
TTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTATCTTCAATCCACTC
CACTGCAACTTTAGGGAGATAAGATTGCTATTTTCAATCCACTCCACTGCAACTTCAGGGAGATA
GGAT
Found at i:82765595 original size:25 final size:25
Alignment explanation
Indices: 82765567--82765625 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 25
82765557 GCTCCGTTGC
*
82765567 TGTACGAAGAGCATTAAAATGACAT
1 TGTACGAAGAACATTAAAATGACAT
* * **
82765592 TGTACAAACAACATTAAAATGGTAT
1 TGTACGAAGAACATTAAAATGACAT
82765617 TGTACGAAG
1 TGTACGAAG
82765626 CTTTGTATGG
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.44, C:0.12, G:0.19, T:0.25
Consensus pattern (25 bp):
TGTACGAAGAACATTAAAATGACAT
Found at i:82774153 original size:21 final size:20
Alignment explanation
Indices: 82774102--82774153 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 20
82774092 GCCCTTATAA
*
82774102 TATTATTTTATACACATATG
1 TATTATTTTATACAAATATG
*
82774122 TATATAATTTATATCAAATTATG
1 TAT-TATTTTATA-CAAA-TATG
82774145 T-TTATTTTA
1 TATTATTTTA
82774154 CATATAAATG
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
20 3 0.12
21 14 0.54
22 4 0.15
23 5 0.19
ACGTcount: A:0.37, C:0.06, G:0.04, T:0.54
Consensus pattern (20 bp):
TATTATTTTATACAAATATG
Found at i:82787075 original size:44 final size:44
Alignment explanation
Indices: 82786957--82787075 Score: 123
Period size: 44 Copynumber: 2.7 Consensus size: 44
82786947 TCACATCGGG
* * * * *
82786957 TCTTATCTCCCTAAAGTTGCAGCGGAGCAGACTGAGAAAACAAG
1 TCTTATCTCCCTAAGGTTGCAGTGGAGCAGACTGAGGAAGCAAA
* ** * *
82787001 TCTTATCCCCCTGAA-GTCACAATGGGGCAGACTGAGGAAGCAAA
1 TCTTATCTCCCT-AAGGTTGCAGTGGAGCAGACTGAGGAAGCAAA
*
82787045 TCTTATCTCCCTAAGGTTGTAGTGGAGCAGA
1 TCTTATCTCCCTAAGGTTGCAGTGGAGCAGA
82787076 TTGAAGTTGA
Statistics
Matches: 58, Mismatches: 15, Indels: 4
0.75 0.19 0.05
Matches are distributed among these distances:
43 2 0.03
44 54 0.93
45 2 0.03
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.23
Consensus pattern (44 bp):
TCTTATCTCCCTAAGGTTGCAGTGGAGCAGACTGAGGAAGCAAA
Done.