Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 272 of 313
Found at i:83145350 original size:52 final size:47
Alignment explanation
Indices: 83145272--83145492 Score: 132
Period size: 45 Copynumber: 4.6 Consensus size: 47
83145262 AATCAAAATC
* *
83145272 AAAAACAAAAAG-AAGAAAAAAGAAAAATCAAAATCAAGGTCAAAATGAA
1 AAAAAGAAAAAGAAAGAAAAATGAAAAATCAAAA--AA-GTCAAAATGAA
* ** * *
83145321 AATAAGAGAAAAAGAAAGAAGAATGAAAAAAGAGAAAAA-TCTAGATGAA
1 AA-AA-AGAAAAAGAAAGAAAAATGAAAAATCA-AAAAAGTCAAAATGAA
** * * * *
83145370 AAAAA-TCAAAGTAA-AAAAATGAAAAGTGAAAAAAAATCAAAAT-AA
1 AAAAAGAAAAAGAAAGAAAAATGAAAAAT-CAAAAAAGTCAAAATGAA
* *
83145415 AAAACG-AAAAG-AAGAAAAAAGAAAAATCAAAATCAATGTCAAAATGAA
1 AAAAAGAAAAAGAAAGAAAAATGAAAAATCAAAA--AA-GTCAAAATGAA
* *
83145463 AATAAGAGAAAAAGAATGAAGAATGAAAAA
1 AA-AA-AGAAAAAGAAAGAAAAATGAAAAA
83145493 GAGAAAAATC
Statistics
Matches: 130, Mismatches: 26, Indels: 29
0.70 0.14 0.16
Matches are distributed among these distances:
44 6 0.05
45 36 0.28
46 14 0.11
47 8 0.06
48 6 0.05
49 14 0.11
50 3 0.02
51 14 0.11
52 26 0.20
53 3 0.02
ACGTcount: A:0.70, C:0.05, G:0.14, T:0.10
Consensus pattern (47 bp):
AAAAAGAAAAAGAAAGAAAAATGAAAAATCAAAAAAGTCAAAATGAA
Found at i:83145386 original size:15 final size:15
Alignment explanation
Indices: 83145368--83145418 Score: 59
Period size: 15 Copynumber: 3.3 Consensus size: 15
83145358 AATCTAGATG
83145368 AAAAAAATCAAAGT-
1 AAAAAAATCAAAGTA
*
83145382 AAAAAAATGAAAAGTGA
1 AAAAAAAT-CAAAGT-A
*
83145399 AAAAAAATCAAAATA
1 AAAAAAATCAAAGTA
83145414 AAAAA
1 AAAAA
83145419 CGAAAAGAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
14 8 0.26
15 11 0.35
16 4 0.13
17 8 0.26
ACGTcount: A:0.76, C:0.04, G:0.08, T:0.12
Consensus pattern (15 bp):
AAAAAAATCAAAGTA
Found at i:83145424 original size:30 final size:32
Alignment explanation
Indices: 83145368--83145434 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 32
83145358 AATCTAGATG
* * *
83145368 AAAAAAATCAAAGTAAAAAAATGAAAAG-TGA
1 AAAAAAATCAAAATAAAAAAACGAAAAGAAGA
83145399 AAAAAAATCAAAAT-AAAAAACGAAAAGAAGA
1 AAAAAAATCAAAATAAAAAAACGAAAAGAAGA
83145430 AAAAA
1 AAAAA
83145435 GAAAAATCAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
30 12 0.38
31 20 0.62
ACGTcount: A:0.76, C:0.04, G:0.10, T:0.09
Consensus pattern (32 bp):
AAAAAAATCAAAATAAAAAAACGAAAAGAAGA
Found at i:83145543 original size:142 final size:142
Alignment explanation
Indices: 83145256--83145535 Score: 508
Period size: 142 Copynumber: 2.0 Consensus size: 142
83145246 AGATCCAATT
*
83145256 AAAAAAAATCAAAATCAAAAACAAAAAGAAGAAAAAAGAAAAATCAAAATCAAGGTCAAAATGAA
1 AAAAAAAATCAAAATAAAAAACAAAAAGAAGAAAAAAGAAAAATCAAAATCAAGGTCAAAATGAA
*
83145321 AATAAGAGAAAAAGAAAGAAGAATGAAAAAAGAGAAAAATCTAGATGAAAAAAATCAAAGTAAAA
66 AATAAGAGAAAAAGAAAGAAGAATGAAAAAAGAGAAAAATCTAGATGAAAAAAATCAAAATAAAA
83145386 AAATGAAAAGTG
131 AAATGAAAAGTG
* *
83145398 AAAAAAAATCAAAATAAAAAACGAAAAGAAGAAAAAAGAAAAATCAAAATCAATGTCAAAATGAA
1 AAAAAAAATCAAAATAAAAAACAAAAAGAAGAAAAAAGAAAAATCAAAATCAAGGTCAAAATGAA
*
83145463 AATAAGAGAAAAAGAATGAAGAATG-AAAAAGAGAAAAATCTAGATGAAAAAAATCAAAATAAAA
66 AATAAGAGAAAAAGAAAGAAGAATGAAAAAAGAGAAAAATCTAGATGAAAAAAATCAAAATAAAA
83145527 AAATGAAAA
131 AAATGAAAA
83145536 AAGGAAAATG
Statistics
Matches: 133, Mismatches: 5, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
141 47 0.35
142 86 0.65
ACGTcount: A:0.70, C:0.05, G:0.13, T:0.11
Consensus pattern (142 bp):
AAAAAAAATCAAAATAAAAAACAAAAAGAAGAAAAAAGAAAAATCAAAATCAAGGTCAAAATGAA
AATAAGAGAAAAAGAAAGAAGAATGAAAAAAGAGAAAAATCTAGATGAAAAAAATCAAAATAAAA
AAATGAAAAGTG
Found at i:83146379 original size:14 final size:14
Alignment explanation
Indices: 83146362--83146395 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
83146352 AATGAAAATG
*
83146362 AAAATGAGAAAGGA
1 AAAATGAAAAAGGA
*
83146376 AAAATGAAAAAGTA
1 AAAATGAAAAAGGA
83146390 AAAATG
1 AAAATG
83146396 GAGAGGCTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.21, T:0.12
Consensus pattern (14 bp):
AAAATGAAAAAGGA
Found at i:83147834 original size:128 final size:128
Alignment explanation
Indices: 83147606--83147861 Score: 440
Period size: 128 Copynumber: 2.0 Consensus size: 128
83147596 ATCGGTGAAA
* *
83147606 TCACAAGTCCTATGTCCCTGACCAGCTGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAA
1 TCACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTACAGATCTCGTCTCCCTAA
***
83147671 GCAGTAGCGGAGCAGATCAAAGACGGCGAATCTTATCTTCAAGTGTAAAGAAGCAGATTTAAG
66 GCAGTAGCGGAGCAGATCAAAGACGAAAAATCTTATCTTCAAGTGTAAAGAAGCAGATTTAAG
83147734 TCACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTACAGATCTCGTCTCCCTAA
1 TCACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTACAGATCTCGTCTCCCTAA
* * *
83147799 GCAGTAGCGGAGCAGATCGAAGATGAAAAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAG
66 GCAGTAGCGGAGCAGATCAAAGACGAAAAATCTTATCTTCAAGTGTAAAGAAGCAGATTTAAG
83147862 CCACGAATCC
Statistics
Matches: 120, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
128 120 1.00
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (128 bp):
TCACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTACAGATCTCGTCTCCCTAA
GCAGTAGCGGAGCAGATCAAAGACGAAAAATCTTATCTTCAAGTGTAAAGAAGCAGATTTAAG
Found at i:83147925 original size:128 final size:128
Alignment explanation
Indices: 83147646--83148033 Score: 374
Period size: 128 Copynumber: 3.0 Consensus size: 128
83147636 GAATAGGTTG
* ** * * * *
83147646 GAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCAAAGACGGCGAATCTTATCTTC
1 GAAATAACAGATCTCATCCCCCTAAGCAGTAGCGGAGCAGATCGAAGATGGAGAATCTTATCTTC
* * * ** * **
83147711 AAGTGTAAAGAAGCAGATTTAAGTCAC-AAGTCCTATGTCCCTGACCA-GCAGTGGAATAGGTT
66 AAGTGTAAGGAAGCAGATTTAAGCCACGAA-TCCTATCTCCCTGAGGATGCAGTGGAGTAGACT
* * * * *
83147773 GGAAATTACAGATCTCGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGATGAAAAATCTTATCTT
1 -GAAATAACAGATCTCATCCCCCTAAGCAGTAGCGGAGCAGATCGAAGATGGAGAATCTTATCTT
* * *
83147838 CAAGTGTAAGGAAGCAGATTTAAGCCACGAATCCTTTCTCCCTGAGGTTGCAGTGGAGCAGACT
65 CAAGTGTAAGGAAGCAGATTTAAGCCACGAATCCTATCTCCCTGAGGATGCAGTGGAGTAGACT
* * * * * *
83147902 -AAGTAAGTAGGTCTTATCCCCCTAAAGTTGCAGT-G-GGA-TAGATCGAAGATGGTGAATCTTA
1 GAAATAA-CAGATCTCATCCCCCT-AA---GCAGTAGCGGAGCAGATCGAAGATGGAGAATCTTA
* * * *
83147963 TCTTCAAGTGTAAGGAAGCAGATTTAAGCCACGAGTTCTATCTCACTGAGGATGCAGTAGAGTAG
61 TCTTCAAGTGTAAGGAAGCAGATTTAAGCCACGAATCCTATCTCCCTGAGGATGCAGTGGAGTAG
83148028 ACT
126 ACT
83148031 GAA
1 GAA
83148034 GACAGCAAGT
Statistics
Matches: 217, Mismatches: 35, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
127 4 0.02
128 107 0.49
129 95 0.44
130 5 0.02
131 1 0.00
132 5 0.02
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (128 bp):
GAAATAACAGATCTCATCCCCCTAAGCAGTAGCGGAGCAGATCGAAGATGGAGAATCTTATCTTC
AAGTGTAAGGAAGCAGATTTAAGCCACGAATCCTATCTCCCTGAGGATGCAGTGGAGTAGACT
Found at i:83147974 original size:129 final size:130
Alignment explanation
Indices: 83147812--83148079 Score: 360
Period size: 129 Copynumber: 2.1 Consensus size: 130
83147802 GTAGCGGAGC
*
83147812 AGATCGAAGATGAAAAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACGAATCCTTTCT
1 AGATCGAAGATGAAAAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACGAATCCTATCT
* * * * * *
83147877 CCCTGAGGTTGCAGTGGAGCAGACT-AAGTA-AGTAGGTCTTATCCCCCTAAAGTTGCAGTGGGA
66 CACTGAGGATGCAGTAGAGCAGACTGAAG-ACAGCAAGTCTTATCCCCCTAAAGTTGCAGTGGAA
83147940 T
130 T
*** * *
83147941 AGATCGAAGATGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACGAGTTCTATCT
1 AGATCGAAGATGAAAAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACGAATCCTATCT
* * * *
83148006 CACTGAGGATGCAGTAGAGTAGACTGAAGACAGCAAGTCTTATTCCCCTGAAGTTGTAGTGGAAT
66 CACTGAGGATGCAGTAGAGCAGACTGAAGACAGCAAGTCTTATCCCCCTAAAGTTGCAGTGGAAT
*
83148071 AGATGGAAG
1 AGATCGAAG
83148080 CTATAAATCA
Statistics
Matches: 120, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
129 81 0.68
130 39 0.32
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (130 bp):
AGATCGAAGATGAAAAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACGAATCCTATCT
CACTGAGGATGCAGTAGAGCAGACTGAAGACAGCAAGTCTTATCCCCCTAAAGTTGCAGTGGAAT
Found at i:83148172 original size:44 final size:44
Alignment explanation
Indices: 83148104--83148221 Score: 125
Period size: 44 Copynumber: 2.7 Consensus size: 44
83148094 CTTTGTCTCT
* *
83148104 CTGAAGTTGCAGT-AGATCAGGTTGAAG-TCACAAATCTT-ATCCCC
1 CTGAAGTTGCAGTGGGACCA-GTTGAAGAT-ACAAAT-TTGATCCCC
* ** * *
83148148 CTGAAGTTGCAGTGGGGCCAGTTGAAGATATGAGTTTGATTCCC
1 CTGAAGTTGCAGTGGGACCAGTTGAAGATACAAATTTGATCCCC
83148192 CTGAAGTTGCAGTGGGACCAGTTGAAGATA
1 CTGAAGTTGCAGTGGGACCAGTTGAAGATA
83148222 TGAGTTCGAT
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
43 2 0.03
44 57 0.90
45 4 0.06
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (44 bp):
CTGAAGTTGCAGTGGGACCAGTTGAAGATACAAATTTGATCCCC
Found at i:83148222 original size:44 final size:44
Alignment explanation
Indices: 83148145--83148250 Score: 176
Period size: 44 Copynumber: 2.4 Consensus size: 44
83148135 AAATCTTATC
* *
83148145 CCCCTGAAGTTGCAGTGGGGCCAGTTGAAGATATGAGTTTGATT
1 CCCCTGAAGTTGCAGTGGGACCAGTTGAAGATATGAGTTCGATT
83148189 CCCCTGAAGTTGCAGTGGGACCAGTTGAAGATATGAGTTCGATT
1 CCCCTGAAGTTGCAGTGGGACCAGTTGAAGATATGAGTTCGATT
* *
83148233 TCCCTGAGGTTGCAGTGG
1 CCCCTGAAGTTGCAGTGG
83148251 AGTGGGTCAA
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 58 1.00
ACGTcount: A:0.22, C:0.18, G:0.32, T:0.28
Consensus pattern (44 bp):
CCCCTGAAGTTGCAGTGGGACCAGTTGAAGATATGAGTTCGATT
Found at i:83157652 original size:22 final size:22
Alignment explanation
Indices: 83157627--83157669 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
83157617 ATAAGCCACC
*
83157627 ACTGATTTGCAGGTAAACTGCT
1 ACTGATTTGCAGATAAACTGCT
* *
83157649 ACTGGTTTGTAGATAAACTGC
1 ACTGATTTGCAGATAAACTGC
83157670 CATTGATAAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (22 bp):
ACTGATTTGCAGATAAACTGCT
Found at i:83164281 original size:24 final size:24
Alignment explanation
Indices: 83164253--83164302 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
83164243 CCCATTAAAA
*
83164253 AACATAACTCTTGACCTTTCATTT
1 AACATAACTATTGACCTTTCATTT
*
83164277 AACATAACTATTGACTTTTCATTT
1 AACATAACTATTGACCTTTCATTT
83164301 AA
1 AA
83164303 GTTTATTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.34, C:0.20, G:0.04, T:0.42
Consensus pattern (24 bp):
AACATAACTATTGACCTTTCATTT
Found at i:83170582 original size:16 final size:15
Alignment explanation
Indices: 83170557--83170603 Score: 51
Period size: 18 Copynumber: 2.9 Consensus size: 15
83170547 ATAACCTATA
83170557 ATAA-ATTATTAATT
1 ATAATATTATTAATT
83170571 ATATATATTATTTAAATT
1 ATA-ATATTA-TT-AATT
83170589 ATAATATATATTAAT
1 ATAATAT-TATTAAT
83170604 ATTAATATCC
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
14 3 0.11
15 1 0.04
16 7 0.25
17 8 0.29
18 9 0.32
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
ATAATATTATTAATT
Found at i:83174418 original size:15 final size:15
Alignment explanation
Indices: 83174398--83174453 Score: 57
Period size: 15 Copynumber: 3.9 Consensus size: 15
83174388 AATAAAATGA
83174398 TTAAAATTATATTAT
1 TTAAAATTATATTAT
*
83174413 TTAAAATTATATGAT
1 TTAAAATTATATTAT
*
83174428 ATT-AAATCATA--A-
1 -TTAAAATTATATTAT
83174440 TTAAAATTATATTA
1 TTAAAATTATATTA
83174454 ATCATAATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 9
0.74 0.07 0.20
Matches are distributed among these distances:
11 2 0.06
12 7 0.21
13 1 0.03
14 1 0.03
15 21 0.62
16 2 0.06
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (15 bp):
TTAAAATTATATTAT
Found at i:83174456 original size:21 final size:21
Alignment explanation
Indices: 83174397--83174466 Score: 70
Period size: 21 Copynumber: 3.3 Consensus size: 21
83174387 GAATAAAATG
* * *
83174397 ATTAAAATTATATTATTTAAA
1 ATTAAAATTATATTAATCATA
* *
83174418 ATT-ATATGATATTAAATCATA
1 ATTAAAATTATATT-AATCATA
83174439 ATTAAAATTATATTAATCATA
1 ATTAAAATTATATTAATCATA
*
83174460 ATAAAAA
1 ATTAAAA
83174467 AATTATATAT
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
20 8 0.21
21 23 0.59
22 8 0.21
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.41
Consensus pattern (21 bp):
ATTAAAATTATATTAATCATA
Found at i:83175410 original size:19 final size:19
Alignment explanation
Indices: 83175388--83175425 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
83175378 AGAAAATATC
*
83175388 ATTTTTACCTACTAATAAA
1 ATTTTTACATACTAATAAA
*
83175407 ATTTTTATATACTAATAAA
1 ATTTTTACATACTAATAAA
83175426 TAAAAAGTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.45, C:0.11, G:0.00, T:0.45
Consensus pattern (19 bp):
ATTTTTACATACTAATAAA
Found at i:83175610 original size:20 final size:21
Alignment explanation
Indices: 83175577--83175632 Score: 53
Period size: 20 Copynumber: 2.7 Consensus size: 21
83175567 TCACTTTCCC
* *
83175577 TCATATTATCTGGTTCTT-TCA
1 TCATATTTTTTGGTTCTTCT-A
*
83175598 -CATATTTTTTGGTACTTCTA
1 TCATATTTTTTGGTTCTTCTA
*
83175618 TCATATTTTTAGGTT
1 TCATATTTTTTGGTT
83175633 TGATATTCTC
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.20, C:0.14, G:0.11, T:0.55
Consensus pattern (21 bp):
TCATATTTTTTGGTTCTTCTA
Found at i:83182514 original size:30 final size:30
Alignment explanation
Indices: 83182479--83182547 Score: 104
Period size: 30 Copynumber: 2.3 Consensus size: 30
83182469 NNNATATATA
83182479 TTTTAAAATACACTACA-AGTATTTTTTTAT
1 TTTTAAAATACACTACATA-TATTTTTTTAT
* *
83182509 TTTTAAAATCCATTACATATATTTTTTTAT
1 TTTTAAAATACACTACATATATTTTTTTAT
83182539 TTTTAAAAT
1 TTTTAAAAT
83182548 TTTAAATACA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
30 35 0.97
31 1 0.03
ACGTcount: A:0.36, C:0.09, G:0.01, T:0.54
Consensus pattern (30 bp):
TTTTAAAATACACTACATATATTTTTTTAT
Found at i:83182653 original size:13 final size:13
Alignment explanation
Indices: 83182635--83182720 Score: 70
Period size: 13 Copynumber: 6.5 Consensus size: 13
83182625 CCATGCAATA
83182635 CCCATTCCCATTT
1 CCCATTCCCATTT
*
83182648 CCCATTCCCATCTC
1 CCCATTCCCAT-TT
* **
83182662 CCCTCTTCCACCGTT
1 CCC-ATTCC-CATTT
83182677 CCC-TCCTCCCA-TT
1 CCCAT--TCCCATTT
83182690 CCCATTCCCATTT
1 CCCATTCCCATTT
83182703 CCCATTCCCA-TT
1 CCCATTCCCATTT
83182715 CCCATT
1 CCCATT
83182721 ATCAACAATA
Statistics
Matches: 60, Mismatches: 6, Indels: 15
0.74 0.07 0.19
Matches are distributed among these distances:
12 13 0.22
13 29 0.48
14 6 0.10
15 11 0.18
16 1 0.02
ACGTcount: A:0.13, C:0.52, G:0.01, T:0.34
Consensus pattern (13 bp):
CCCATTCCCATTT
Found at i:83182694 original size:6 final size:6
Alignment explanation
Indices: 83182683--83182720 Score: 67
Period size: 6 Copynumber: 6.2 Consensus size: 6
83182673 CGTTCCCTCC
83182683 TCCCAT TCCCAT TCCCATT TCCCAT TCCCAT TCCCAT T
1 TCCCAT TCCCAT TCCCA-T TCCCAT TCCCAT TCCCAT T
83182721 ATCAACAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 25 0.81
7 6 0.19
ACGTcount: A:0.16, C:0.47, G:0.00, T:0.37
Consensus pattern (6 bp):
TCCCAT
Found at i:83187810 original size:41 final size:41
Alignment explanation
Indices: 83187765--83187894 Score: 179
Period size: 41 Copynumber: 3.2 Consensus size: 41
83187755 AACCAGCTCA
* *
83187765 AAGCCTGTTAGGCACAAAGGCTGATAATATACACCGGCATG
1 AAGCCTGCTAGGCACAAAGCCTGATAATATACACCGGCATG
* * **
83187806 AAGCCTGCCAGGCACAAAGCCTGATAATATAAACCAACATG
1 AAGCCTGCTAGGCACAAAGCCTGATAATATACACCGGCATG
* * *
83187847 AAACCTACTAGGCACAAAGCCTAATAATATACACCGGCATG
1 AAGCCTGCTAGGCACAAAGCCTGATAATATACACCGGCATG
83187888 AAGCCTG
1 AAGCCTG
83187895 TTGGACTCAA
Statistics
Matches: 74, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 74 1.00
ACGTcount: A:0.38, C:0.25, G:0.19, T:0.17
Consensus pattern (41 bp):
AAGCCTGCTAGGCACAAAGCCTGATAATATACACCGGCATG
Found at i:83187840 original size:82 final size:82
Alignment explanation
Indices: 83187702--83187894 Score: 221
Period size: 82 Copynumber: 2.4 Consensus size: 82
83187692 GTACAAGTTA
* * ** * * *
83187702 CCTGATACA-ATACACTGGCAAGAAGCCTGTTAGGCTCAAAGCCTAATACAGTAAACCAGC-TCA
1 CCTGATA-ATATACACCGGCATGAAGCCTGCCAGGCACAAAGCCTAATACAATAAACCAACATCA
**
83187765 AAGCCTGTTAGGCACAAAG
65 AA-CCTACTAGGCACAAAG
* * *
83187784 GCTGATAATATACACCGGCATGAAGCCTGCCAGGCACAAAGCCTGATA-ATATAAACCAACATGA
1 CCTGATAATATACACCGGCATGAAGCCTGCCAGGCACAAAGCCTAATACA-ATAAACCAACATCA
83187848 AACCTACTAGGCACAAAG
65 AACCTACTAGGCACAAAG
*
83187866 CCTAATAATATACACCGGCATGAAGCCTG
1 CCTGATAATATACACCGGCATGAAGCCTG
83187895 TTGGACTCAA
Statistics
Matches: 94, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
81 2 0.02
82 88 0.94
83 4 0.04
ACGTcount: A:0.38, C:0.26, G:0.19, T:0.18
Consensus pattern (82 bp):
CCTGATAATATACACCGGCATGAAGCCTGCCAGGCACAAAGCCTAATACAATAAACCAACATCAA
ACCTACTAGGCACAAAG
Found at i:83189108 original size:21 final size:21
Alignment explanation
Indices: 83189070--83189110 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
83189060 ATTTTATAAA
*
83189070 ACCACTTGACTTTAATTATTT
1 ACCACTTGACCTTAATTATTT
83189091 ACCACTTGAACCTT-ATTATT
1 ACCACTTG-ACCTTAATTATT
83189111 CTTTCAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.29, C:0.22, G:0.05, T:0.44
Consensus pattern (21 bp):
ACCACTTGACCTTAATTATTT
Found at i:83191968 original size:24 final size:25
Alignment explanation
Indices: 83191923--83191971 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
83191913 GAATCAAAAC
83191923 AAAAAAGAAAAGAATACCGAAGAAG
1 AAAAAAGAAAAGAATACCGAAGAAG
*
83191948 AAAAAAGGAAAA-AA-ACGGAAGAAG
1 AAAAAA-GAAAAGAATACCGAAGAAG
83191972 CAAGAGAGCA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 9 0.41
25 8 0.36
26 5 0.23
ACGTcount: A:0.69, C:0.06, G:0.22, T:0.02
Consensus pattern (25 bp):
AAAAAAGAAAAGAATACCGAAGAAG
Found at i:83204475 original size:37 final size:37
Alignment explanation
Indices: 83204422--83204505 Score: 132
Period size: 37 Copynumber: 2.2 Consensus size: 37
83204412 TGAAAACAAA
* *
83204422 AAATACCATTCAATTAATATTTATTGATTTTTTAAAAT
1 AAATA-CATTAAATTAATATTTATTGATTTGTTAAAAT
83204460 AAATACATTAAATTAATATTTATTGATTTGTTAAAAT
1 AAATACATTAAATTAATATTTATTGATTTGTTAAAAT
*
83204497 AAAGACATT
1 AAATACATT
83204506 TTGATAATTT
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
37 38 0.88
38 5 0.12
ACGTcount: A:0.45, C:0.06, G:0.05, T:0.44
Consensus pattern (37 bp):
AAATACATTAAATTAATATTTATTGATTTGTTAAAAT
Found at i:83213408 original size:60 final size:59
Alignment explanation
Indices: 83213335--83213447 Score: 167
Period size: 60 Copynumber: 1.9 Consensus size: 59
83213325 GATCGTATGA
*
83213335 TTTATTTTCATTTTCGGGCTTTAAAATA-ACTCAAAAACATAAA-TGCAATCTTCCGANTGG
1 TTTATTTTCATTTTCAGGCTTTAAAATAGA-TCAAAAACATAAACT-CAATCTTCCGA-TGG
*
83213395 TTTATTTTCATTTTCAGGCTTTAAAATAGATTAAAAACATAAACTCAATCTTC
1 TTTATTTTCATTTTCAGGCTTTAAAATAGATCAAAAACATAAACTCAATCTTC
83213448 TGATCATTTT
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
60 47 0.96
61 2 0.04
ACGTcount: A:0.35, C:0.16, G:0.09, T:0.39
Consensus pattern (59 bp):
TTTATTTTCATTTTCAGGCTTTAAAATAGATCAAAAACATAAACTCAATCTTCCGATGG
Found at i:83215600 original size:26 final size:26
Alignment explanation
Indices: 83215571--83215627 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
83215561 TCTCATCCCT
83215571 ATTTTACCCCTAACAAAATTTTGACG
1 ATTTTACCCCTAACAAAATTTTGACG
* ** *
83215597 ATTTTACCCGTAGTAAAATTTTGATG
1 ATTTTACCCCTAACAAAATTTTGACG
83215623 ATTTT
1 ATTTT
83215628 TCCCAAGATA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.16, G:0.11, T:0.42
Consensus pattern (26 bp):
ATTTTACCCCTAACAAAATTTTGACG
Found at i:83215639 original size:26 final size:26
Alignment explanation
Indices: 83215585--83215646 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
83215575 TACCCCTAAC
*
83215585 AAAATTTTGACGATTTTACCCGTAGT
1 AAAATTTTGACGATTTTACCCGAAGT
* *
83215611 AAAATTTTGATGATTTTTCCC-AAGAT
1 AAAATTTTGACGATTTTACCCGAAG-T
83215637 AAAATTTTGA
1 AAAATTTTGA
83215647 GAAAATATGT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
25 2 0.06
26 30 0.94
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.40
Consensus pattern (26 bp):
AAAATTTTGACGATTTTACCCGAAGT
Found at i:83215799 original size:6 final size:6
Alignment explanation
Indices: 83215790--83215821 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
83215780 TGCAATTGGT
*
83215790 CATTTC CATTTC CATTTT CATTTC CATTTC CA
1 CATTTC CATTTC CATTTC CATTTC CATTTC CA
83215822 CTTTTGGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.19, C:0.31, G:0.00, T:0.50
Consensus pattern (6 bp):
CATTTC
Found at i:83215812 original size:18 final size:19
Alignment explanation
Indices: 83215789--83215826 Score: 69
Period size: 18 Copynumber: 2.1 Consensus size: 19
83215779 TTGCAATTGG
83215789 TCATTTCCATTTCCA-TTT
1 TCATTTCCATTTCCACTTT
83215807 TCATTTCCATTTCCACTTT
1 TCATTTCCATTTCCACTTT
83215826 T
1 T
83215827 GGAAACCTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.16, C:0.29, G:0.00, T:0.55
Consensus pattern (19 bp):
TCATTTCCATTTCCACTTT
Found at i:83219788 original size:30 final size:30
Alignment explanation
Indices: 83219742--83219865 Score: 176
Period size: 30 Copynumber: 4.1 Consensus size: 30
83219732 TTTTATTATG
* *
83219742 CCAATATCTCGATACCCATATCTTTGACATT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
*
83219773 CCAATATTTGATACCCATATATTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
*
83219803 CCAATATTTGATACCCATATCTTTAACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* * *
83219833 CTATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
83219863 CCA
1 CCA
83219866 TAAATATAGA
Statistics
Matches: 83, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
30 76 0.92
31 7 0.08
ACGTcount: A:0.28, C:0.23, G:0.06, T:0.43
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:83219794 original size:15 final size:15
Alignment explanation
Indices: 83219752--83219859 Score: 69
Period size: 15 Copynumber: 7.2 Consensus size: 15
83219742 CCAATATCTC
*
83219752 GATACCCATATCTTT
1 GATACCCATATATTT
* *
83219767 GACATTCCA-ATATTT
1 GATA-CCCATATATTT
83219782 GATACCCATATATTT
1 GATACCCATATATTT
**
83219797 GACTTTCCA-ATATTT
1 GA-TACCCATATATTT
*
83219812 GATACCCATATCTTT
1 GATACCCATATATTT
* ** *
83219827 AACTTTCTAT-TATTT
1 GA-TACCCATATATTT
*
83219842 GATACCCATATCTTT
1 GATACCCATATATTT
83219857 GAT
1 GAT
83219860 TTTCCATAAA
Statistics
Matches: 67, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
14 11 0.16
15 45 0.67
16 11 0.16
ACGTcount: A:0.29, C:0.21, G:0.06, T:0.44
Consensus pattern (15 bp):
GATACCCATATATTT
Found at i:83224477 original size:15 final size:15
Alignment explanation
Indices: 83224457--83224539 Score: 64
Period size: 15 Copynumber: 5.5 Consensus size: 15
83224447 CGATACCCAT
83224457 ATATTTGACTTTCCA
1 ATATTTGACTTTCCA
*
83224472 ATATTTGA--TACTCA
1 ATATTTGACTTTC-CA
*
83224486 TATCTTTGACTTTCCA
1 -ATATTTGACTTTCCA
**
83224502 ATATTTGA-TACCCA
1 ATATTTGACTTTCCA
*
83224516 TATCTTTGACTTTCCA
1 -ATATTTGACTTTCCA
*
83224532 TTATTTGA
1 ATATTTGA
83224540 TAAGGGGGGG
Statistics
Matches: 51, Mismatches: 11, Indels: 12
0.69 0.15 0.16
Matches are distributed among these distances:
13 2 0.04
14 6 0.12
15 35 0.69
16 6 0.12
17 2 0.04
ACGTcount: A:0.27, C:0.19, G:0.07, T:0.47
Consensus pattern (15 bp):
ATATTTGACTTTCCA
Found at i:83224488 original size:30 final size:30
Alignment explanation
Indices: 83224438--83224541 Score: 163
Period size: 30 Copynumber: 3.4 Consensus size: 30
83224428 TTTTATTATG
* *
83224438 CCAATATCTCGATACCCATATATTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
*
83224469 CCAATATTTGATACTCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
83224499 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
*
83224529 CCATTATTTGATA
1 CCAATATTTGATA
83224542 AGGGGGGGGG
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
30 61 0.90
31 7 0.10
ACGTcount: A:0.28, C:0.22, G:0.07, T:0.43
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:83225934 original size:13 final size:13
Alignment explanation
Indices: 83225916--83225941 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
83225906 GGGCCACCCC
83225916 CAAAACCCAATAA
1 CAAAACCCAATAA
83225929 CAAAACCCAATAA
1 CAAAACCCAATAA
83225942 ACCAAATAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.31, G:0.00, T:0.08
Consensus pattern (13 bp):
CAAAACCCAATAA
Found at i:83227197 original size:3 final size:3
Alignment explanation
Indices: 83227179--83227229 Score: 52
Period size: 3 Copynumber: 17.0 Consensus size: 3
83227169 TTAAATACTC
* *
83227179 TTA TTA TTT TTA -TA TTA TTAA TT- TTA TTA TTA TTA ATA TTA TTA
1 TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA
83227223 TGTA TTA
1 T-TA TTA
83227230 GTTTATGTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
2 4 0.10
3 30 0.75
4 6 0.15
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:83227209 original size:15 final size:15
Alignment explanation
Indices: 83227179--83227229 Score: 68
Period size: 15 Copynumber: 3.4 Consensus size: 15
83227169 TTAAATACTC
*
83227179 TTATTATTTTTA-TA
1 TTATTAATTTTATTA
83227193 TTATTAATTTTATTA
1 TTATTAATTTTATTA
*
83227208 TTATTAATATTATTA
1 TTATTAATTTTATTA
83227223 TGTATTA
1 T-TATTA
83227230 GTTTATGTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.33
15 17 0.52
16 5 0.15
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (15 bp):
TTATTAATTTTATTA
Found at i:83239959 original size:85 final size:85
Alignment explanation
Indices: 83239858--83240033 Score: 336
Period size: 85 Copynumber: 2.1 Consensus size: 85
83239848 TTTCTCTATC
83239858 AACAAAAAATAAATTAAAAATTAAAAATATTTATGAAAATTTCAAAATTTTATATATTTTTTAAA
1 AACAAAAAATAAATTAAAAATTAAAAATATTTATGAAAATTTCAAAATTTTATATATTTTTTAAA
83239923 AATTAAAAAATAAAATTGTA
66 AATTAAAAAATAAAATTGTA
*
83239943 AACAAAAACTAAATTAAAAATTAAAAATATTTATGAAAATTTCAAAATTTTATATATTTTTTAAA
1 AACAAAAAATAAATTAAAAATTAAAAATATTTATGAAAATTTCAAAATTTTATATATTTTTTAAA
83240008 AATTAAAAAATAAAATTGTA
66 AATTAAAAAATAAAATTGTA
83240028 AA-AAAA
1 AACAAAA
83240034 GGTTAATTTT
Statistics
Matches: 90, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
84 4 0.04
85 86 0.96
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.35
Consensus pattern (85 bp):
AACAAAAAATAAATTAAAAATTAAAAATATTTATGAAAATTTCAAAATTTTATATATTTTTTAAA
AATTAAAAAATAAAATTGTA
Found at i:83241270 original size:10 final size:10
Alignment explanation
Indices: 83241257--83241290 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
83241247 AAAAAACATA
83241257 AAAAATTATT
1 AAAAATTATT
83241267 AAAAATTATT
1 AAAAATTATT
*
83241277 AAAATTTAATT
1 AAAAATT-ATT
83241288 AAA
1 AAA
83241291 TTTATAAANN
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 16 0.73
11 6 0.27
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (10 bp):
AAAAATTATT
Found at i:83244527 original size:19 final size:20
Alignment explanation
Indices: 83244484--83244530 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
83244474 GAGATATATT
83244484 ATTTAAAATTAATTTTATAA
1 ATTTAAAATTAATTTTATAA
83244504 A-TTAAAATT-ATTTTA-AA
1 ATTTAAAATTAATTTTATAA
83244521 ATTTTAAAAT
1 A-TTTAAAAT
83244531 GTTTCAAGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 3 0.12
18 6 0.24
19 15 0.60
20 1 0.04
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
ATTTAAAATTAATTTTATAA
Found at i:83245908 original size:23 final size:23
Alignment explanation
Indices: 83245875--83245927 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
83245865 TTCGAACCGA
*
83245875 CTGCTATCGCCTCAATGGCTTTC
1 CTGCTAACGCCTCAATGGCTTTC
83245898 CTGCTAACGCCTCAATGGCTTTC
1 CTGCTAACGCCTCAATGGCTTTC
83245921 CTGCTAA
1 CTGCTAA
83245928 TTTCAAGTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.17, C:0.34, G:0.17, T:0.32
Consensus pattern (23 bp):
CTGCTAACGCCTCAATGGCTTTC
Found at i:83252007 original size:42 final size:42
Alignment explanation
Indices: 83251902--83252186 Score: 304
Period size: 42 Copynumber: 6.7 Consensus size: 42
83251892 TTTTTTACAT
** * *
83251902 AAACGCCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTTTCACAT
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGC--TTTT-ATAG
* * * * *
83251947 AAACGCCGCTATAGATCATGACATTTAGCGACGTTTTTATAG
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTATAG
* * *
83251989 CAATGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTATAG
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTATAG
* *
83252031 AAAACGCCACT-AAGAACATGACCTTTAGCGACGCTTTTATAG
1 -AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTATAG
** * *
83252073 AAACGCTACTAAAGAACATGACCTTTAGCGGCGCCTTTGTAG
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTATAG
* * *
83252115 AAAACGCCGCTAAAAAACATAACCTTTAGCGGCACTTTTATAG
1 -AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTATAG
*
83252158 CAAATGCCGCTAAA-AACATGACCTTTAGC
1 -AAACGCCGCTAAAGAACATGACCTTTAGC
83252187 AGCATTTTAC
Statistics
Matches: 205, Mismatches: 32, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
41 9 0.04
42 109 0.53
43 58 0.28
45 29 0.14
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (42 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTATAG
Found at i:83252093 original size:84 final size:84
Alignment explanation
Indices: 83251906--83252211 Score: 339
Period size: 84 Copynumber: 3.6 Consensus size: 84
83251896 TTACATAAAC
** * * * * *
83251906 GCCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTTTCACATAAACGCCGCTATAGATCATGACAT
1 GCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTAT-AGA-AAACGCCACTA-AGAACATGACCT
* *
83251971 TTAGCGACGTTTTTATAGCAAT
63 TTAGCGACGCTTTTATAGAAAT
*
83251993 GCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTATAGAAAACGCCACTAAGAACATGACCTTTA
1 GCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTATAGAAAACGCCACTAAGAACATGACCTTTA
*
83252058 GCGACGCTTTTATAGAAAC
66 GCGACGCTTTTATAGAAAT
** * * * * *
83252077 GCTACTAAAGAACATGACCTTTAGCGGCGCCTTTGTAGAAAACGCCGCTAAAAAACATAACCTTT
1 GCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTATAGAAAACGCCACT-AAGAACATGACCTTT
* *
83252142 AGCGGCACTTTTATAGCAAAT
65 AGCGACGCTTTTATAG-AAAT
* *
83252163 GCCGCTAAA-AACATGACCTTTAGCAGC-ATTTTACTA-AAAACGCCACTAA
1 GCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTA-TAGAAAACGCCACTAA
83252212 CTTTGGCATC
Statistics
Matches: 189, Mismatches: 27, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
83 2 0.01
84 85 0.45
85 56 0.30
86 12 0.06
87 34 0.18
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (84 bp):
GCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTATAGAAAACGCCACTAAGAACATGACCTTTA
GCGACGCTTTTATAGAAAT
Found at i:83255484 original size:28 final size:28
Alignment explanation
Indices: 83255444--83255501 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
83255434 GAGTTTTGAG
83255444 AATGTTTTAGAAAGTAAATAATCAAAAC
1 AATGTTTTAGAAAGTAAATAATCAAAAC
83255472 AATGTTTTAGAAAGTAAATAATCAAAAC
1 AATGTTTTAGAAAGTAAATAATCAAAAC
83255500 AA
1 AA
83255502 CATAAATAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.55, C:0.07, G:0.10, T:0.28
Consensus pattern (28 bp):
AATGTTTTAGAAAGTAAATAATCAAAAC
Found at i:83256815 original size:76 final size:74
Alignment explanation
Indices: 83256704--83256909 Score: 223
Period size: 76 Copynumber: 2.7 Consensus size: 74
83256694 TCTTTTTAGT
* *
83256704 TTTCTTTGTATCAAAAGTCAAATCCGTTTTAAAAAATGGGTTAAGCCTCGAGATTATCGTCGAGG
1 TTTCATTGTATCAAAAGTCGAAT-CGTTTTAAAAAATGGGTTAAGCCTCGAGATTATCGTCGAGG
83256769 TCCTTTCAATG
65 TCCTTT-AATG
* * ** * * * *
83256780 TTTCATTGTATTAAAAGTCGAATCGATTTTCAAAAATGGGTCGAGCCTTGAGGTTGTTGTCGAGG
1 TTTCATTGTATCAAAAGTCGAATCG-TTTTAAAAAATGGGTTAAGCCTCGAGATTATCGTCGAGG
* *
83256845 TCCTTTTATT
65 TCCTTTAATG
* *** *
83256855 TTTCATTTTATCAAAAGTCGAATCTGTTTTAAAAAATAAATTAAGCCTCGGGATT
1 TTTCATTGTATCAAAAGTCGAATC-GTTTTAAAAAATGGGTTAAGCCTCGAGATT
83256910 GCCATCCAAG
Statistics
Matches: 105, Mismatches: 23, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
75 46 0.44
76 59 0.56
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (74 bp):
TTTCATTGTATCAAAAGTCGAATCGTTTTAAAAAATGGGTTAAGCCTCGAGATTATCGTCGAGGT
CCTTTAATG
Found at i:83256902 original size:75 final size:74
Alignment explanation
Indices: 83256675--83256909 Score: 229
Period size: 75 Copynumber: 3.1 Consensus size: 74
83256665 CATGTTATCA
* * * * * *
83256675 CTCGGGATTATCGTTGGGGTCTTTTTAGTTTTC-TTTGTATCAAAAGTCAAATCCGTTTTAAAAA
1 CTCGAGATTATCGTCGAGGTCCTTTTATTTTTCATTT-TATCAAAAGTCGAAT-CGTTTTAAAAA
83256739 ATGGGTTAAGC
64 ATGGGTTAAGC
* * * * *
83256750 CTCGAGATTATCGTCGAGGTCCTTTCAATGTTTCATTGTATTAAAAGTCGAATCGATTTTCAAAA
1 CTCGAGATTATCGTCGAGGTCCTTT-TATTTTTCATTTTATCAAAAGTCGAATCG-TTTTAAAAA
**
83256815 ATGGGTCGAGC
64 ATGGGTTAAGC
* * * *
83256826 CTTGAGGTTGTTGTCGAGGTCCTTTTATTTTTCATTTTATCAAAAGTCGAATCTGTTTTAAAAAA
1 CTCGAGATTATCGTCGAGGTCCTTTTATTTTTCATTTTATCAAAAGTCGAATC-GTTTTAAAAAA
***
83256891 TAAATTAAGC
65 TGGGTTAAGC
*
83256901 CTCGGGATT
1 CTCGAGATT
83256910 GCCATCCAAG
Statistics
Matches: 126, Mismatches: 30, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
75 67 0.53
76 57 0.45
77 2 0.02
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (74 bp):
CTCGAGATTATCGTCGAGGTCCTTTTATTTTTCATTTTATCAAAAGTCGAATCGTTTTAAAAAAT
GGGTTAAGC
Found at i:83261446 original size:22 final size:22
Alignment explanation
Indices: 83261421--83261463 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
83261411 CATCCAAACA
83261421 ATAACAACAAAATAGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
* * *
83261443 ATAATAATAAAATGGTAGCAA
1 ATAACAACAAAATAGTAGCAA
83261464 AATAGAGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.19
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAC
Found at i:83265162 original size:15 final size:15
Alignment explanation
Indices: 83265138--83265169 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
83265128 TATGCATGTA
*
83265138 AAATATAAAAGACAT
1 AAATACAAAAGACAT
83265153 AAATACAAAAGACAT
1 AAATACAAAAGACAT
83265168 AA
1 AA
83265170 GAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATACAAAAGACAT
Found at i:83265408 original size:44 final size:44
Alignment explanation
Indices: 83265301--83265748 Score: 434
Period size: 44 Copynumber: 10.1 Consensus size: 44
83265291 TACAAGCTAT
* * *
83265301 AAATCTTATCTCCCTGAAGTTGTAGTAGAGCAAATTGAAGATAGC
1 AAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTGAAGATA-C
* *
83265346 AAATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTGAAGTTAC
1 AAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTGAAGATAC
* * * * **
83265390 AAATCTTATCTCCCTAAAGTTACAATAGAACAGATTAAAGCCAC
1 AAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTGAAGATAC
* * **
83265434 AAATCTTTTCTCCC-AGAAGTTGCAAT-GAAATAGATTGAAGATAGC
1 AAATCTTATCTCCCTA-AAGTTGCAGTAG-AGCAGATTGAAGATA-C
* * * * **
83265479 AAATCTTATCTCTCTAAAGCTGCAGTAGAGCATATTAAAGCCAC
1 AAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTGAAGATAC
* *
83265523 AAATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGATAGC
1 AAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTGAAGATA-C
* * * * *
83265568 AAATATTATCTCTCTAAAGTTGTAGTAGAGCCGATTGAAGTTAC
1 AAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTGAAGATAC
* * * *
83265612 AAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAAATAC
1 AAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTGAAGATAC
* * * * *
83265656 GAGTCTCATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTAC
1 AAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTGAAGATAC
* * * * * *
83265700 AAGTCTAATCTCCCTTAAGTTGCAGTGGAGTATATTGAAGCA-AC
1 AAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTGAAG-ATAC
83265744 AAATC
1 AAATC
83265749 CTACGAGTTG
Statistics
Matches: 332, Mismatches: 64, Indels: 15
0.81 0.16 0.04
Matches are distributed among these distances:
43 2 0.01
44 221 0.67
45 107 0.32
46 2 0.01
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (44 bp):
AAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTGAAGATAC
Found at i:83265482 original size:89 final size:88
Alignment explanation
Indices: 83265301--83265748 Score: 443
Period size: 89 Copynumber: 5.1 Consensus size: 88
83265291 TACAAGCTAT
* * * * ** *
83265301 AAATCTTATCTCCCTGAAGTTGTAGTAGAGCAAATTGAAGATAGCAAATCTTATCTCTCTA-AAG
1 AAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGCCA-CAAATCTTATCTC-CCAGAAG
* * *
83265365 TTGCAGTAGAGCAGATTGAAGTTAC
64 TTGCAGTGGAGTAGATTGAAGATAC
* * * *
83265390 AAATCTTATCTCCCTAAAGTTACAATAGAACAGATTAAAGCCACAAATCTTTTCTCCCAGAAGTT
1 AAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGCCACAAATCTTATCTCCCAGAAGTT
* * *
83265455 GCAATGAAATAGATTGAAGATAGC
66 GCAGTGGAGTAGATTGAAGATA-C
* * *
83265479 AAATCTTATCTCTCTAAAGCTGCAGTAGAGCATATTAAAGCCACAAATCTTATCTCCCTA-AAGT
1 AAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGCCACAAATCTTATCTCCC-AGAAGT
* *
83265543 TGTAGTGGAGCAGATTGAAGATAGC
65 TGCAGTGGAGTAGATTGAAGATA-C
* * * * * ** *
83265568 AAATATTATCTCTCTAAAGTTGTAGTAGAGCCGATTGAAGTTACAAATCTTATCTCCCTGAAGTT
1 AAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGCCACAAATCTTATCTCCCAGAAGTT
*
83265633 GCAGTGGAGTAGATTGAAAATAC
66 GCAGTGGAGTAGATTGAAGATAC
* * * * * * * * **
83265656 GAGTCTCATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTACAAGTCTAATCTCCCTTAAGTT
1 AAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGCCACAAATCTTATCTCCCAGAAGTT
*
83265721 GCAGTGGAGTATATTGAAGCA-AC
66 GCAGTGGAGTAGATTGAAG-ATAC
83265744 AAATC
1 AAATC
83265749 CTACGAGTTG
Statistics
Matches: 297, Mismatches: 57, Indels: 11
0.81 0.16 0.03
Matches are distributed among these distances:
87 2 0.01
88 109 0.37
89 185 0.62
90 1 0.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (88 bp):
AAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGCCACAAATCTTATCTCCCAGAAGTT
GCAGTGGAGTAGATTGAAGATAC
Found at i:83265615 original size:133 final size:132
Alignment explanation
Indices: 83265301--83265739 Score: 427
Period size: 133 Copynumber: 3.3 Consensus size: 132
83265291 TACAAGCTAT
* *
83265301 AAATCTTATCTCCCTGAAGTTGTAGTAGAGCAAATTGAAGATAGCAAATCTTATCTCTCTAAAGT
1 AAATCTTATCT-CCTAAAGTTGTAGTAGAGCAGATTGAAGATAGCAAATCTTATCTCTCTAAAGT
* * * * * * * *
83265366 TGCAGTAGAGCAGATTGAAGTTACAAATCTTATCTCCCTAAAGTTACAATAGAACAGATTAAAGC
65 TGCAGTAGAGCAGATTAAAGATACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGA
83265431 CAC
130 CAC
* * * * **
83265434 AAATCTTTTCTCCCAGAAGTTGCAAT-GAAATAGATTGAAGATAGCAAATCTTATCTCTCTAAAG
1 AAATCTTATCTCCTA-AAGTTGTAGTAG-AGCAGATTGAAGATAGCAAATCTTATCTCTCTAAAG
* * ** *
83265498 CTGCAGTAGAGCATATTAAAGCCACAAATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAG
64 TTGCAGTAGAGCAGATTAAAGATACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAG
*
83265563 ATAGC
129 ACA-C
* * * * *
83265568 AAATATTATCTCTCTAAAGTTGTAGTAGAGCCGATTGAAGTTA-CAAATCTTATCTCCCTGAAGT
1 AAATCTTATCTC-CTAAAGTTGTAGTAGAGCAGATTGAAGATAGCAAATCTTATCTCTCTAAAGT
* * * * *
83265632 TGCAGTGGAGTAGATTGAAA-ATACGAGTCTCATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAG
65 TGCAGTAGAGCAGATT-AAAGATACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAG
83265696 -CTAC
129 AC-AC
* * * * * * *
83265700 AAGTCTAATCTCCCTTAAGTTGCAGTGGAGTATATTGAAG
1 AAATCTTATCT-CCTAAAGTTGTAGTAGAGCAGATTGAAG
83265740 CAACAAATCC
Statistics
Matches: 246, Mismatches: 52, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
132 33 0.13
133 177 0.72
134 33 0.13
135 3 0.01
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.29
Consensus pattern (132 bp):
AAATCTTATCTCCTAAAGTTGTAGTAGAGCAGATTGAAGATAGCAAATCTTATCTCTCTAAAGTT
GCAGTAGAGCAGATTAAAGATACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGAC
AC
Found at i:83271811 original size:51 final size:48
Alignment explanation
Indices: 83271747--83271962 Score: 146
Period size: 51 Copynumber: 4.5 Consensus size: 48
83271737 GAAGATAGCG
* * *
83271747 AATCTTGTTTCCCTGAAGTTGCAGTAGAACAGACTAAAGCTACAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTAGAACAGA-TTAA-CTA-AAGTTACA
* * ** * *
83271798 AATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTGAA-TATAG---CC
1 AATCTTATCTCCCTGAAGTTGCAGTAGAACAGATT-AACTAAAGTTACA
* *
83271843 AATCTTATTTCCCTGAAGTTGCAAT-GAAACAGATTCAAGCTACAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTAG-AACAGATT-AA-CTA-AAGTTACA
* *
83271894 AATCTTATCTCCCT-AGAGTTGTAGTAGAGCAGA-T--C-AAAGTTACA
1 AATCTTATCTCCCTGA-AGTTGCAGTAGAACAGATTAACTAAAGTTACA
* *
83271938 AGTCTTATCTCCCTGAAGTAGCAGT
1 AATCTTATCTCCCTGAAGTTGCAGT
83271963 GGAGTAGATT
Statistics
Matches: 130, Mismatches: 24, Indels: 29
0.71 0.13 0.16
Matches are distributed among these distances:
44 29 0.22
45 33 0.25
46 1 0.01
47 2 0.02
48 4 0.03
49 2 0.02
50 3 0.02
51 55 0.42
52 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (48 bp):
AATCTTATCTCCCTGAAGTTGCAGTAGAACAGATTAACTAAAGTTACA
Found at i:83271865 original size:96 final size:96
Alignment explanation
Indices: 83271741--83271914 Score: 278
Period size: 96 Copynumber: 1.8 Consensus size: 96
83271731 ATTGTAGAAG
* * *
83271741 ATAGCGAATCTTGTTTCCCTGAAGTTGCAGT-AGAACAGACTAAAGCTACAAGTTACAAATCTTA
1 ATAGCCAATCTTATTTCCCTGAAGTTGCAATGA-AACAGACTAAAGCTACAAGTTACAAATCTTA
83271805 TCTCCCTAAAGTTGCAGTGGAGTAGATTGAAT
65 TCTCCCTAAAGTTGCAGTGGAGTAGATTGAAT
* *
83271837 ATAGCCAATCTTATTTCCCTGAAGTTGCAATGAAACAGATTCAAGCTACAAGTTACAAATCTTAT
1 ATAGCCAATCTTATTTCCCTGAAGTTGCAATGAAACAGACTAAAGCTACAAGTTACAAATCTTAT
*
83271902 CTCCCTAGAGTTG
66 CTCCCTAAAGTTG
83271915 TAGTAGAGCA
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
96 70 0.99
97 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (96 bp):
ATAGCCAATCTTATTTCCCTGAAGTTGCAATGAAACAGACTAAAGCTACAAGTTACAAATCTTAT
CTCCCTAAAGTTGCAGTGGAGTAGATTGAAT
Found at i:83271983 original size:44 final size:43
Alignment explanation
Indices: 83271890--83272528 Score: 375
Period size: 44 Copynumber: 14.2 Consensus size: 43
83271880 AGCTACAAGT
* * **
83271890 TACAAATCTTATCTCCCT-AGAGTTGTAGTAGAGCAGATCAAAG
1 TACAAATCTTATCTCCCTGA-AGTTGCAGTGGAGCAGATTGAAG
* * *
83271933 TTACAAGTCTTATCTCCCTGAAGTAGCAGTGGAGTAGATTGAAG
1 -TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
* * * * * *
83271977 TGACAAGTCTTATAC-CTCTGAAGTTGCAGTGG-TCGGATTAAATC
1 T-ACAAATCTTAT-CTCCCTGAAGTTGCAGTGGAGCAGATTGAA-G
* * **
83272021 TACCATAGTAAGTCTTATCTCCCTGAAGTTGCAGTGGAATAAACTAAAATACAAG
1 TA-C--A--AA-TCTTATCTCCCTGAAGTTGCAGTGG----AGC--AGATTGAAG
* * * * *
83272076 CTACAAATCTTATCTCCTTGAAGTTGTATTTTGAGCAAATTGAAG
1 -TACAAATCTTATCTCCCTGAAGTTGCA-GTGGAGCAGATTGAAG
* *
83272121 ATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAG
1 -TA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
* * * * * * *
83272166 TTACAAATTTTATCGCCCTAAAGTTACAATGGAACAGATTAAAG
1 -TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
* * * *
83272210 CCACAAATCTTTTCTCCCTAAAGTTGCAGTGGAGCAGATTAAAG
1 -TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
* * * * *
83272254 ATAGCAAATCTTATCTCTCTGAAGTTGCATTAGAGCATATTAAAG
1 -TA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
* * *
83272299 CCACAAATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAG
1 -TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
* * ** * * *
83272343 ATAGAAAATATTATCTCTTTAAAGCTGCAGTAGAGCAGATTGAAG
1 -TA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
* * *
83272388 TTACAAATCTTATCTCCCTAAAGTTACAGTGGAGCAGATTGTAG
1 -TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
* * * * * * * *
83272432 ATACGAGTCTCATCTCCCTAAACTTGTAGTGGAGTAGATTAAAG
1 -TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
* * **
83272476 CTACAAGTCTAATCTCCCTGAAGTTGCAGTGGATTAGATTGAAG
1 -TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
*
83272520 CAACAAATC
1 -TACAAATC
83272529 CTATGCAGTG
Statistics
Matches: 463, Mismatches: 109, Indels: 46
0.75 0.18 0.07
Matches are distributed among these distances:
43 8 0.02
44 276 0.60
45 98 0.21
46 23 0.05
47 2 0.00
48 2 0.00
49 22 0.05
50 19 0.04
51 4 0.01
53 1 0.00
54 1 0.00
55 1 0.00
56 6 0.01
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.30
Consensus pattern (43 bp):
TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
Found at i:83272280 original size:133 final size:134
Alignment explanation
Indices: 83272108--83272428 Score: 376
Period size: 133 Copynumber: 2.4 Consensus size: 134
83272098 GTTGTATTTT
* **
83272108 GAGCAAATTGAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGTTACAAA
1 GAGCAGATTGAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGCCACAAA
* * * * * *
83272173 TTTTATCGCCCTAAAGTTACAATGGAACAGATTAAAGCCA-CAAATCTTTTCTCCCTAAAGTTGC
66 TCTTATCGCCCTAAAGTTACAATGGAACAGATTAAAGACAGAAAATATTATCTCCCTAAAGCTGC
*
83272237 AGTG
131 AGTA
* * * *
83272241 GAGCAGATTAAAGATAGCAAATCTTATCTCTCTGAAGTTGCATTAGAGCATATTAAAGCCACAAA
1 GAGCAGATTGAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGCCACAAA
* ** * * * * **
83272306 TCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGATAGAAAATATTATCTCTTTAAAGCTGC
66 TCTTATCGCCCTAAAGTTACAATGGAACAGATTAAAGACAGAAAATATTATCTCCCTAAAGCTGC
83272371 AGTA
131 AGTA
* * * * *
83272375 GAGCAGATTGAAGTTA-CAAATCTTATCTCCCTAAAGTTACAGTGGAGCAGATTG
1 GAGCAGATTGAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTG
83272429 TAGATACGAG
Statistics
Matches: 155, Mismatches: 32, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
133 120 0.77
134 35 0.23
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.29
Consensus pattern (134 bp):
GAGCAGATTGAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGCCACAAA
TCTTATCGCCCTAAAGTTACAATGGAACAGATTAAAGACAGAAAATATTATCTCCCTAAAGCTGC
AGTA
Found at i:83272303 original size:89 final size:89
Alignment explanation
Indices: 83272125--83272519 Score: 407
Period size: 89 Copynumber: 4.5 Consensus size: 89
83272115 TTGAAGATAG
* * * * * * *
83272125 CAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGTTA-CAAATTTTATCGCCCTAAAG
1 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATCTCTCTAAAG
* * * *
83272189 TTACAATGGAACAGATTAAAGCCA
66 TTGCATTAGAGCAGATTAAAGCCA
* * *
83272213 CAAATCTTTTCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGATAGCAAATCTTATCTCTCTGAAG
1 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATCTCTCTAAAG
*
83272278 TTGCATTAGAGCATATTAAAGCCA
66 TTGCATTAGAGCAGATTAAAGCCA
* * * *
83272302 CAAATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGATAGAAAATATTATCTCTTTAAAG
1 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATCTCTCTAAAG
* * * **
83272367 CTGCAGTAGAGCAGATTGAAGTTA
66 TTGCATTAGAGCAGATTAAAGCCA
* * * * * * *
83272391 CAAATCTTATCTCCCTAAAGTTACAGTGGAGCAGATTGTAGATA-CGAGTCTCATCTCCCTAAAC
1 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATCTCTCTAAAG
* * * * *
83272455 TTGTAGTGGAGTAGATTAAAGCTA
66 TTGCATTAGAGCAGATTAAAGCCA
* * * **
83272479 CAAGTCTAATCTCCCTGAAGTTGCAGTGGATTAGATTGAAG
1 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAG
83272520 CAACAAATCC
Statistics
Matches: 254, Mismatches: 52, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
88 102 0.40
89 152 0.60
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (89 bp):
CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATCTCTCTAAAG
TTGCATTAGAGCAGATTAAAGCCA
Found at i:83272447 original size:133 final size:134
Alignment explanation
Indices: 83272108--83272471 Score: 327
Period size: 133 Copynumber: 2.7 Consensus size: 134
83272098 GTTGTATTTT
* * * * * * **
83272108 GAGCAAATTGAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGTTACAAA
1 GAGCAGATTAAAGATAGCAAATCTTATCTCCCTAAAGTTACAGTAGAGCAGATTAAAGACACAAA
* * * * ** * * * ** * * * ** *
83272173 TTTTATCGCCCTAAAGTTACAATGGAACAGATTAAAGCCA-CAAATCTTTTCTCCCTAAAGTTGC
66 TCTCATCTCCCTAAACTTGTAGTGGAGCAGATTGAAGATAGAAAATATTATCTCTTTAAAGCTGC
*
83272237 AGTG
131 AGTA
* * * * * *
83272241 GAGCAGATTAAAGATAGCAAATCTTATCTCTCTGAAGTTGCATTAGAGCATATTAAAGCCACAAA
1 GAGCAGATTAAAGATAGCAAATCTTATCTCCCTAAAGTTACAGTAGAGCAGATTAAAGACACAAA
* *
83272306 TCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGATAGAAAATATTATCTCTTTAAAGCTGC
66 TCTCATCTCCCTAAACTTGTAGTGGAGCAGATTGAAGATAGAAAATATTATCTCTTTAAAGCTGC
83272371 AGTA
131 AGTA
* * * ** * * *
83272375 GAGCAGATTGAAGTTA-CAAATCTTATCTCCCTAAAGTTACAGTGGAGCAGATTGTAGATACGAG
1 GAGCAGATTAAAGATAGCAAATCTTATCTCCCTAAAGTTACAGTAGAGCAGATTAAAGACACAAA
*
83272439 TCTCATCTCCCTAAACTTGTAGTGGAGTAGATT
66 TCTCATCTCCCTAAACTTGTAGTGGAGCAGATT
83272472 AAAGCTACAA
Statistics
Matches: 190, Mismatches: 40, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
133 155 0.82
134 35 0.18
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (134 bp):
GAGCAGATTAAAGATAGCAAATCTTATCTCCCTAAAGTTACAGTAGAGCAGATTAAAGACACAAA
TCTCATCTCCCTAAACTTGTAGTGGAGCAGATTGAAGATAGAAAATATTATCTCTTTAAAGCTGC
AGTA
Found at i:83274148 original size:21 final size:22
Alignment explanation
Indices: 83274118--83274159 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
83274108 ATTATATATT
*
83274118 ATTCATTTATT-TTTTATTTTA
1 ATTCATTTATTCCTTTATTTTA
*
83274139 ATTCCTTTATTCCTTTATTTT
1 ATTCATTTATTCCTTTATTTT
83274160 TTATTTCTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.19, C:0.12, G:0.00, T:0.69
Consensus pattern (22 bp):
ATTCATTTATTCCTTTATTTTA
Found at i:83274210 original size:26 final size:27
Alignment explanation
Indices: 83274163--83274218 Score: 69
Period size: 28 Copynumber: 2.1 Consensus size: 27
83274153 TTATTTTTTA
*
83274163 TTTCTTCATTTTTTTTAATATTTAAAAT
1 TTTCTTCATTTTCTTT-ATATTTAAAAT
* *
83274191 TTTCTTTATTTTCTTT-TATTTAGAAT
1 TTTCTTCATTTTCTTTATATTTAAAAT
83274217 TT
1 TT
83274219 ATTTCTTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 11 0.44
28 14 0.56
ACGTcount: A:0.23, C:0.07, G:0.02, T:0.68
Consensus pattern (27 bp):
TTTCTTCATTTTCTTTATATTTAAAAT
Found at i:83282442 original size:44 final size:44
Alignment explanation
Indices: 83282379--83283290 Score: 457
Period size: 44 Copynumber: 20.0 Consensus size: 44
83282369 TTAAAGCTAC
* * * *
83282379 AAGTTACAAATCTTATCTCCCTAAAGTTGTAATGGAGTAGATCA
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTA
* * * *
83282423 AAGTTACAAGTCTTATCTCCCTGAAGTAGCAGTGGAGGAGATTG
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTA
* * * * * *
83282467 AAGTGACAAGTCCTATAC-CTCTAAAGTTGCAGTGG-GTTGGATTA
1 AAGTTACAAATCTTAT-CTCCCTGAAGTTGCAGTGGAG-TAGATTA
* *
83282511 AA-TCTACCATACTAAGTCTTATCTCCCTGAAGTTGTAGTGGAATAGACTAAAAATA
1 AAGT-TA-C--A--AA-TCTTATCTCCCTGAAGTTGCAGTGGAGTAGA-T-----TA
* * * * *
83282567 CAAGCTACAAATCTTATCTCCCTGAAGTTGTATTAGAGCAGATTA
1 -AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTA
* * * * * *
83282612 AAGATAGTAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTG
1 AAGTTA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTA
* *
83282657 AAGTTACAAATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTG
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTA
* * * **
83282701 AA-TATAGCCAATCTTATTTCCCTGAAGTTGCAGTGAAACAGATTCAAGCTA
1 AAGT-TA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGA-T-----TA
* * *
83282752 CAAGTTACAAATCTTATCTCCCT-AGAGTTGTAATGGAGTAGATCA
1 -AAGTTACAAATCTTATCTCCCTGA-AGTTGCAGTGGAGTAGATTA
* * * *
83282797 AAGTTACAAGTCTTATCTCCCTGAAGTAGCAGTGGAGGAGATTG
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTA
* * * * * *
83282841 AAGTGACAAGTCCTATAC-CTCTAAAGTTGCAGTGG-GTTGGATTA
1 AAGTTACAAATCTTAT-CTCCCTGAAGTTGCAGTGGAG-TAGATTA
* *
83282885 AA-TCTACCATACTAAGTCTTATCTCCCTGAAGTTGTAGTGGAATAGACTAAAAATA
1 AAGT-TA-C--A--AA-TCTTATCTCCCTGAAGTTGCAGTGGAGTAGA-T-----TA
* * * * *
83282941 CAAGCTACAAATCTTATCTCCCTGAAGTTGTATTAGAGCAGATTA
1 -AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTA
* * * * * *
83282986 AAGATAGTAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTG
1 AAGTTA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTA
* * * * *
83283031 AAGTTACAAATCTTATCTCCCTAAAGTTACAATAGAGCAGATTA
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTA
** * * *
83283075 AAGCCACAAATCTTATC-CCCTGAAGTTGTAGTGGAGCAGATTG
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTA
* * * * ** * *
83283118 AAGATAGCAAATATTATCTCTCTGAAGCTGCAGTAAAG-CGTATTG
1 AAGTTA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAG-ATTA
* * * *
83283163 AAGTTACAAATC-T-TCTCTCTAAAGTTGTAGTGGAGCAGATTGA
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATT-A
* * * * * * **
83283206 AA-ATACGAGTCTCATATCCCTGAAGTTGTAGTGGAACAGATTA
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTA
* * *
83283249 AAGCTACAAGTCTAATCTCCCTGAAG-TGCCAGTGGAGTAGAT
1 AAGTTACAAATCTTATCTCCCTGAAGTTG-CAGTGGAGTAGAT
83283291 CGAAGCAACA
Statistics
Matches: 669, Mismatches: 138, Indels: 122
0.72 0.15 0.13
Matches are distributed among these distances:
42 26 0.04
43 38 0.06
44 304 0.45
45 138 0.21
46 1 0.00
47 2 0.00
49 4 0.01
50 48 0.07
51 83 0.12
52 8 0.01
53 1 0.00
54 2 0.00
56 6 0.01
57 8 0.01
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.30
Consensus pattern (44 bp):
AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTA
Found at i:83282726 original size:89 final size:89
Alignment explanation
Indices: 83282572--83283275 Score: 440
Period size: 89 Copynumber: 7.8 Consensus size: 89
83282562 AAATACAAGC
* * * * *
83282572 TACAAATCTTATCTCCCTGAAGTTGTATTAGAGCAGATTAAAGATAGTAAATCTTATCTCTCTGA
1 TACAAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGATAGCAAATCTTATCTCCCTGA
83282637 AGTTGCAGTAGAGCAGATTGAAGT
66 AGTTGCAGTAGAGCAGATTGAAGT
* * * * * *
83282661 TACAAATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTGAATATAGCCAATCTTATTTCCCTGA
1 TACAAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGATAGCAAATCTTATCTCCCTGA
*
83282726 AGTTGCAGT-GAAACAGATTCAAGCTACAAGT
66 AGTTGCAGTAG-AGCAGATT---G----AAGT
* * * * * * * *
83282757 TACAAATCTTATCTCCCTAGAGTTGTAATGGAGTAGATCAAAGTTA-CAAGTCTTATCTCCCTGA
1 TACAAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGATAGCAAATCTTATCTCCCTGA
* * *
83282821 AGTAGCAGTGGAGGAGATTGAAGT
66 AGTTGCAGTAGAGCAGATTGAAGT
* * * * * ** ** *
83282845 GACAAGTCCTATAC-CTCTAAAGTTGCAGT-GGGTTGGATTAAATCTACCATACTAAGTCTTATC
1 TACAAATCTTAT-CTCCCTAAAGTTGCAGTAGAG-CAGATTAAAGATAGC--A--AA-TCTTATC
* * * ** *
83282908 TCCCTGAAGTTGTAGTGGAATAGACTAAAAATACAAGC
59 TCCCTGAAGTTGCAGT---AGAG-C---AGATTGAAGT
* * * * *
83282946 TACAAATCTTATCTCCCTGAAGTTGTATTAGAGCAGATTAAAGATAGTAAATCTTATCTCTCTGA
1 TACAAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGATAGCAAATCTTATCTCCCTGA
83283011 AGTTGCAGTAGAGCAGATTGAAGT
66 AGTTGCAGTAGAGCAGATTGAAGT
* * **
83283035 TACAAATCTTATCTCCCTAAAGTTACAATAGAGCAGATTAAAGCCA-CAAATCTTATC-CCCTGA
1 TACAAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGATAGCAAATCTTATCTCCCTGA
* * *
83283098 AGTTGTAGTGGAGCAGATTGAAGA
66 AGTTGCAGTAGAGCAGATTGAAGT
* * * * * * * *
83283122 TAGCAAATATTATCTCTCTGAAGCTGCAGTAAAGC-GTATTGAAGTTA-CAAATC-T-TCTCTCT
1 TA-CAAATCTTATCTCCCTAAAGTTGCAGTAGAGCAG-ATTAAAGATAGCAAATCTTATCTCCCT
* * * **
83283183 AAAGTTGTAGTGGAGCAGATTGAAAA
64 GAAGTTGCAGTAGAGCAGATTGAAGT
* * * * * * * * * * *
83283209 TACGAGTCTCATATCCCTGAAGTTGTAGTGGAACAGATTAAAGCTA-CAAGTCTAATCTCCCTGA
1 TACAAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGATAGCAAATCTTATCTCCCTGA
83283273 AGT
66 AGT
83283276 GCCAGTGGAG
Statistics
Matches: 474, Mismatches: 109, Indels: 65
0.73 0.17 0.10
Matches are distributed among these distances:
86 36 0.08
87 62 0.13
88 92 0.19
89 118 0.25
91 1 0.00
92 3 0.01
93 4 0.01
94 21 0.04
95 29 0.06
96 65 0.14
97 4 0.01
99 1 0.00
100 1 0.00
101 35 0.07
102 2 0.00
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (89 bp):
TACAAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGATAGCAAATCTTATCTCCCTGA
AGTTGCAGTAGAGCAGATTGAAGT
Found at i:83283032 original size:374 final size:374
Alignment explanation
Indices: 83282336--83283058 Score: 1401
Period size: 374 Copynumber: 1.9 Consensus size: 374
83282326 GAAGATAGTG
* *
83282336 AATCTTGTTTCCCTAAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTACAAATCTTATCTCCCT
1 AATCTTATTTCCCTAAAGTTGCAGTGAAACAGATTAAAGCTACAAGTTACAAATCTTATCTCCCT
83282401 AAAGTTGTAATGGAGTAGATCAAAGTTACAAGTCTTATCTCCCTGAAGTAGCAGTGGAGGAGATT
66 AAAGTTGTAATGGAGTAGATCAAAGTTACAAGTCTTATCTCCCTGAAGTAGCAGTGGAGGAGATT
83282466 GAAGTGACAAGTCCTATACCTCTAAAGTTGCAGTGGGTTGGATTAAATCTACCATACTAAGTCTT
131 GAAGTGACAAGTCCTATACCTCTAAAGTTGCAGTGGGTTGGATTAAATCTACCATACTAAGTCTT
83282531 ATCTCCCTGAAGTTGTAGTGGAATAGACTAAAAATACAAGCTACAAATCTTATCTCCCTGAAGTT
196 ATCTCCCTGAAGTTGTAGTGGAATAGACTAAAAATACAAGCTACAAATCTTATCTCCCTGAAGTT
83282596 GTATTAGAGCAGATTAAAGATAGTAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGT
261 GTATTAGAGCAGATTAAAGATAGTAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGT
83282661 TACAAATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTGAATATAGCC
326 TACAAATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTGAATATAGCC
* *
83282710 AATCTTATTTCCCTGAAGTTGCAGTGAAACAGATTCAAGCTACAAGTTACAAATCTTATCTCCCT
1 AATCTTATTTCCCTAAAGTTGCAGTGAAACAGATTAAAGCTACAAGTTACAAATCTTATCTCCCT
*
83282775 AGAGTTGTAATGGAGTAGATCAAAGTTACAAGTCTTATCTCCCTGAAGTAGCAGTGGAGGAGATT
66 AAAGTTGTAATGGAGTAGATCAAAGTTACAAGTCTTATCTCCCTGAAGTAGCAGTGGAGGAGATT
83282840 GAAGTGACAAGTCCTATACCTCTAAAGTTGCAGTGGGTTGGATTAAATCTACCATACTAAGTCTT
131 GAAGTGACAAGTCCTATACCTCTAAAGTTGCAGTGGGTTGGATTAAATCTACCATACTAAGTCTT
83282905 ATCTCCCTGAAGTTGTAGTGGAATAGACTAAAAATACAAGCTACAAATCTTATCTCCCTGAAGTT
196 ATCTCCCTGAAGTTGTAGTGGAATAGACTAAAAATACAAGCTACAAATCTTATCTCCCTGAAGTT
83282970 GTATTAGAGCAGATTAAAGATAGTAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGT
261 GTATTAGAGCAGATTAAAGATAGTAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGT
83283035 TACAAATCTTATCTCCCTAAAGTT
326 TACAAATCTTATCTCCCTAAAGTT
83283059 ACAATAGAGC
Statistics
Matches: 344, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
374 344 1.00
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.30
Consensus pattern (374 bp):
AATCTTATTTCCCTAAAGTTGCAGTGAAACAGATTAAAGCTACAAGTTACAAATCTTATCTCCCT
AAAGTTGTAATGGAGTAGATCAAAGTTACAAGTCTTATCTCCCTGAAGTAGCAGTGGAGGAGATT
GAAGTGACAAGTCCTATACCTCTAAAGTTGCAGTGGGTTGGATTAAATCTACCATACTAAGTCTT
ATCTCCCTGAAGTTGTAGTGGAATAGACTAAAAATACAAGCTACAAATCTTATCTCCCTGAAGTT
GTATTAGAGCAGATTAAAGATAGTAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGT
TACAAATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTGAATATAGCC
Found at i:83283188 original size:87 final size:86
Alignment explanation
Indices: 83283002--83283211 Score: 233
Period size: 87 Copynumber: 2.4 Consensus size: 86
83282992 GTAAATCTTA
* * * * * *
83283002 TCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGTTACAAATCTTATCTCCCTAAAGTTACAATAGA
1 TCTCTCTGAAGTTGTAGTGGAGCAGATTGAAGATACAAATATTATCTCCCTAAAGCTACAATAAA
83283067 GCAGATTAAAGCCACAAATCT
66 GCAGATTAAAGCCACAAATCT
* * * * * *
83283088 TATCCCCTGAAGTTGTAGTGGAGCAGATTGAAGATAGCAAATATTATCTCTCTGAAGCTGCAGTA
1 TCT-CTCTGAAGTTGTAGTGGAGCAGATTGAAGATA-CAAATATTATCTCCCTAAAGCTACAATA
* **
83283153 AAGC-GTATTGAAGTTACAAATCT
64 AAGCAG-ATTAAAGCCACAAATCT
* *
83283176 TCTCTCTAAAGTTGTAGTGGAGCAGATTGAAAATAC
1 TCTCTCTGAAGTTGTAGTGGAGCAGATTGAAGATAC
83283212 GAGTCTCATA
Statistics
Matches: 102, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
86 3 0.03
87 58 0.57
88 41 0.40
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (86 bp):
TCTCTCTGAAGTTGTAGTGGAGCAGATTGAAGATACAAATATTATCTCCCTAAAGCTACAATAAA
GCAGATTAAAGCCACAAATCT
Found at i:83284849 original size:17 final size:18
Alignment explanation
Indices: 83284799--83284857 Score: 57
Period size: 17 Copynumber: 3.2 Consensus size: 18
83284789 TTGTAAATTG
*
83284799 TTTCCTTTTATTTTTTTA
1 TTTCCTTTTATTTTATTA
* *
83284817 TTTACATATTTTTTTTATTA
1 TTT-CCT-TTTATTTTATTA
83284837 -TTCCTTTTATTTTATTCA
1 TTTCCTTTTATTTTATT-A
83284855 TTT
1 TTT
83284858 AATGGCTTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
17 10 0.31
18 6 0.19
19 6 0.19
20 10 0.31
ACGTcount: A:0.17, C:0.10, G:0.00, T:0.73
Consensus pattern (18 bp):
TTTCCTTTTATTTTATTA
Found at i:83285272 original size:13 final size:13
Alignment explanation
Indices: 83285254--83285282 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
83285244 TGCCATCGTC
83285254 ATTACAAATTGGA
1 ATTACAAATTGGA
83285267 ATTACAAATTGGA
1 ATTACAAATTGGA
83285280 ATT
1 ATT
83285283 TTATCACTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.45, C:0.07, G:0.14, T:0.34
Consensus pattern (13 bp):
ATTACAAATTGGA
Found at i:83285546 original size:33 final size:32
Alignment explanation
Indices: 83285485--83285556 Score: 83
Period size: 33 Copynumber: 2.2 Consensus size: 32
83285475 TAGAAAAGCT
*
83285485 AATATTTTCTGGTGTTTGGATGAATCTTTGTAA
1 AATATTTTCTGGTGTTTGGATGAATCTTT-AAA
** *
83285518 AATATTTTCTTTTGTTTGGCA-GATTCTTTAAA
1 AATATTTTCTGGTGTTTGG-ATGAATCTTTAAA
83285550 AATATTT
1 AATATTT
83285557 CATAAAAGTC
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
32 9 0.26
33 24 0.71
34 1 0.03
ACGTcount: A:0.26, C:0.07, G:0.15, T:0.51
Consensus pattern (32 bp):
AATATTTTCTGGTGTTTGGATGAATCTTTAAA
Found at i:83290676 original size:6 final size:6
Alignment explanation
Indices: 83290658--83290698 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
83290648 TTACTCTTCC
* * *
83290658 TCATCA TCATCG TCGTCG TCATCG TCATCG TCATCA TCATC
1 TCATCG TCATCG TCATCG TCATCG TCATCG TCATCG TCATC
83290699 TTCTCCTTCC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.20, C:0.34, G:0.12, T:0.34
Consensus pattern (6 bp):
TCATCG
Found at i:83293693 original size:18 final size:17
Alignment explanation
Indices: 83293655--83293690 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
83293645 TAGAGTTGGG
* *
83293655 TTGAAAATATTATTTAA
1 TTGAAAAAATAATTTAA
83293672 TTGAAAAAATAATTTAA
1 TTGAAAAAATAATTTAA
83293689 TT
1 TT
83293691 TGATATTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (17 bp):
TTGAAAAAATAATTTAA
Found at i:83295614 original size:12 final size:12
Alignment explanation
Indices: 83295599--83295628 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
83295589 TTAATAAATC
83295599 TATTATGATTAT
1 TATTATGATTAT
83295611 TATTATGATTAT
1 TATTATGATTAT
*
83295623 TTTTAT
1 TATTAT
83295629 TTATTTCCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (12 bp):
TATTATGATTAT
Found at i:83296180 original size:15 final size:15
Alignment explanation
Indices: 83296162--83296192 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
83296152 TTATTATTCG
*
83296162 TTTTTGTTCATATTA
1 TTTTTGTTCACATTA
83296177 TTTTTGTTCACATTA
1 TTTTTGTTCACATTA
83296192 T
1 T
83296193 CATATTTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.10, G:0.06, T:0.65
Consensus pattern (15 bp):
TTTTTGTTCACATTA
Found at i:83296253 original size:18 final size:20
Alignment explanation
Indices: 83296230--83296268 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
83296220 AACACCATAC
83296230 TTCAAA-AAAGGAAA-ATTT
1 TTCAAAGAAAGGAAAGATTT
*
83296248 TTCAAAGTAAGGAAAGATTT
1 TTCAAAGAAAGGAAAGATTT
83296268 T
1 T
83296269 GCGTTTGGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 6 0.33
19 7 0.39
20 5 0.28
ACGTcount: A:0.49, C:0.05, G:0.15, T:0.31
Consensus pattern (20 bp):
TTCAAAGAAAGGAAAGATTT
Found at i:83299685 original size:8 final size:8
Alignment explanation
Indices: 83299674--83299745 Score: 60
Period size: 8 Copynumber: 9.0 Consensus size: 8
83299664 GTATGGGATG
83299674 CAAAAAAA
1 CAAAAAAA
83299682 CAAAACATAA
1 CAAAA-A-AA
*
83299692 -AACAAAA
1 CAAAAAAA
*
83299699 C-ATAAAA
1 CAAAAAAA
83299706 C-AAAAAA
1 CAAAAAAA
*
83299713 CAAAGAAA
1 CAAAAAAA
*
83299721 CAAAGAAA
1 CAAAAAAA
83299729 CAAAAAAAA
1 C-AAAAAAA
83299738 CAAAAAAA
1 CAAAAAAA
83299746 ATCTCTACCG
Statistics
Matches: 54, Mismatches: 5, Indels: 10
0.78 0.07 0.14
Matches are distributed among these distances:
7 14 0.26
8 27 0.50
9 11 0.20
10 2 0.04
ACGTcount: A:0.81, C:0.14, G:0.03, T:0.03
Consensus pattern (8 bp):
CAAAAAAA
Found at i:83299695 original size:12 final size:12
Alignment explanation
Indices: 83299678--83299710 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
83299668 GGGATGCAAA
83299678 AAAACAAAACAT
1 AAAACAAAACAT
83299690 AAAACAAAACAT
1 AAAACAAAACAT
83299702 AAAACAAAA
1 AAAACAAAA
83299711 AACAAAGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.79, C:0.15, G:0.00, T:0.06
Consensus pattern (12 bp):
AAAACAAAACAT
Found at i:83299744 original size:7 final size:7
Alignment explanation
Indices: 83299674--83299735 Score: 58
Period size: 7 Copynumber: 9.0 Consensus size: 7
83299664 GTATGGGATG
83299674 CAAAAAA
1 CAAAAAA
*
83299681 -ACAAAA
1 CAAAAAA
*
83299687 CATAAAA
1 CAAAAAA
83299694 C--AAAA
1 CAAAAAA
*
83299699 CATAAAA
1 CAAAAAA
83299706 CAAAAAA
1 CAAAAAA
83299713 CAAAGAAA
1 CAAA-AAA
83299721 CAAAGAAA
1 CAAA-AAA
83299729 CAAAAAA
1 CAAAAAA
83299736 AACAAAAAAA
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
5 5 0.10
6 5 0.10
7 23 0.48
8 15 0.31
ACGTcount: A:0.79, C:0.15, G:0.03, T:0.03
Consensus pattern (7 bp):
CAAAAAA
Found at i:83300125 original size:6 final size:6
Alignment explanation
Indices: 83300103--83300138 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
83300093 AAAATATTTT
*
83300103 GAAAAA GAAGAA G-AAAA GAAAAA GAAAAA GAAAAA G
1 GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA G
83300139 GAGAGGCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
5 4 0.15
6 23 0.85
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (6 bp):
GAAAAA
Found at i:83300125 original size:17 final size:17
Alignment explanation
Indices: 83300103--83300136 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
83300093 AAAATATTTT
*
83300103 GAAAAAGAAGAAGAAAA
1 GAAAAAGAAAAAGAAAA
83300120 GAAAAAGAAAAAGAAAA
1 GAAAAAGAAAAAGAAAA
83300137 AGGAGAGGCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (17 bp):
GAAAAAGAAAAAGAAAA
Found at i:83301615 original size:46 final size:46
Alignment explanation
Indices: 83301361--83301601 Score: 401
Period size: 46 Copynumber: 5.2 Consensus size: 46
83301351 CCTAGAGAAC
* *
83301361 AGATCAAAGATAGCAGATCTTGTCTTCCTATATTTGGCAGCGGAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGT
* *
83301407 AGATCGAATATAGCAAATCTTGTCTTCCTGTATTTGGCAGCGGAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGT
*
83301453 AGATCGAAGATAGCGGATCTTGTCTTCCTGTATTTGGCAGCGGAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGT
*
83301499 AGATCGAAGTTAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGT
* **
83301545 AGATCGAAGATAGCATATCTTGTCTTCCTGTATTTGGCAGCAAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGT
83301591 AGATCGAAGAT
1 AGATCGAAGAT
83301602 TACAGATTCT
Statistics
Matches: 182, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 182 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (46 bp):
AGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGT
Found at i:83301743 original size:131 final size:132
Alignment explanation
Indices: 83301596--83302167 Score: 824
Period size: 131 Copynumber: 4.3 Consensus size: 132
83301586 AAAGTAGATC
** * * **
83301596 GAAGATTACAGATTCTGTCTCCTTAAGCAGTAGTGGAGCAGATCGAAGATGGAAAATCTTATCTT
1 GAAGATTGTAGATTCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTT
* *
83301661 CCCAAGATAGTGGAGAACCAGATTTAAACCATTAGTCCTATC-TCCTAAGCAGTAGTGGAGTAGG
66 CCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTTCCTAAGCAGTAGTGGAGTAGG
83301725 TT
131 TT
* * * *
83301727 GAAGATTGTAGATTCTGTCCCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATCTTGTCTT
1 GAAGATTGTAGATTCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTT
* *
83301792 TCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTTCCTAAGCAATAGTGGAGTAGG
66 CCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTTCCTAAGCAGTAGTGGAGTAGG
83301857 TT
131 TT
*
83301859 GAAGATTGTAGATTCTGTCTCCCTAAGTAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTT
1 GAAGATTGTAGATTCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTT
* *
83301924 CCCAAGATAATGAAGAAGCAGATTTAAGCCATTAGTCCTATC-TCCTAAGCAGTAGTGGAGTAGG
66 CCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTTCCTAAGCAGTAGTGGAGTAGG
*
83301988 TC
131 TT
* * *
83301990 AAAGATTGTAGATTCTGTATCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGTGAATCTTATCTT
1 GAAGATTGTAGATTCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTT
* * ** *
83302055 CCCAAGATAGTGGAGAAGCTGATTTAAGCCATTAGTCATATCTTCCTAAATAGTAGTGAAGTAGG
66 CCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTTCCTAAGCAGTAGTGGAGTAGG
83302120 TT
131 TT
* * * * * * **
83302122 AAAGATTTTGGATCCTATCTCTCTAAGCAGTAGCAGAGCAGATCAA
1 GAAGATTGTAGATTCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAA
83302168 CAACAGCGAA
Statistics
Matches: 398, Mismatches: 41, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
131 218 0.55
132 180 0.45
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.28
Consensus pattern (132 bp):
GAAGATTGTAGATTCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTT
CCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTTCCTAAGCAGTAGTGGAGTAGG
TT
Found at i:83301908 original size:44 final size:44
Alignment explanation
Indices: 83301698--83302038 Score: 147
Period size: 44 Copynumber: 7.8 Consensus size: 44
83301688 ACCATTAGTC
* * **
83301698 CTATCT-CCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATT
1 CTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATTGTAGATT
* * * ** *
83301741 CTGTCCCCCTAAGCAGTAGTGGAGCAGATCGAAGA-TGGCGAAT
1 CTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATTGTAGATT
* * ** *
83301784 CTTGTCTTTCC-AAG-A-TAGTGGAGAAGCAGATTTAAGCCA-T-TAG-TC
1 C-TATC-TCCCTAAGCAGTAGT-G-G-AGCAGATCAAAG--ATTGTAGATT
* * * * **
83301829 CTATCTTCCTAAGCAATAGTGGAGTAGGTTGAAGATTGTAGATT
1 CTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATTGTAGATT
* * * *
83301873 CTGTCTCCCTAAGTAGTAGTGGAGCAGATCAAAGATGGT-GAAT
1 CTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATTGTAGATT
* ** *
83301916 CTTATCTTCCC-AAG-A-TAATGAAGAAGCAGATTTAAGCCA-T-TAG-TC
1 C-TATC-TCCCTAAGCAGTAGTG--G-AGCAGATCAAAG--ATTGTAGATT
* *
83301961 CTATCT-CCTAAGCAGTAGTGGAGTAGGTCAAAGATTGTAGATT
1 CTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATTGTAGATT
* *
83302004 CTGTATCCCTAAGCAGTAGTGGAGCAGATCAAAGA
1 CTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGA
83302039 CGGTGAATCT
Statistics
Matches: 221, Mismatches: 48, Indels: 57
0.68 0.15 0.17
Matches are distributed among these distances:
40 1 0.00
41 2 0.01
42 22 0.10
43 43 0.19
44 109 0.49
45 35 0.16
46 6 0.03
47 3 0.01
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (44 bp):
CTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATTGTAGATT
Found at i:83302063 original size:263 final size:263
Alignment explanation
Indices: 83301587--83302167 Score: 838
Period size: 263 Copynumber: 2.2 Consensus size: 263
83301577 TTTGGCAGCA
* * * * *
83301587 AAGTAGATCGAAGATTACAGATTCTGTCTCCTTAAGCAGTAGTGGAGCAGATCGAAGATGGAAAA
1 AAGTAGGTTGAAGATTATAGATTCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGAAAA
* *
83301652 TCTTATCTTCCCAAGATAGTGGAGAACCAGATTTAAACCATTAGTCCTATCTCCTAAGCAGTAGT
66 TCTTATCTTCCCAAGATAATGAAGAACCAGATTTAAACCATTAGTCCTATCTCCTAAGCAGTAGT
** * * *
83301717 GGAGTAGGTTGAAGATTGTAGATTCTGTCCCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGA
131 GGAGTAGGTCAAAGATTGTAGATTCTGTACCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCGA
* * * *
83301782 ATCTTGTCTTTCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTTCCTAAGCAATA
196 ATCTTATCTTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCATATCTTCCTAAACAATA
83301847 GTG
261 GTG
* * * **
83301850 GAGTAGGTTGAAGATTGTAGATTCTGTCTCCCTAAGTAGTAGTGGAGCAGATCAAAGATGGTGAA
1 AAGTAGGTTGAAGATTATAGATTCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGAAAA
* *
83301915 TCTTATCTTCCCAAGATAATGAAGAAGCAGATTTAAGCCATTAGTCCTATCTCCTAAGCAGTAGT
66 TCTTATCTTCCCAAGATAATGAAGAACCAGATTTAAACCATTAGTCCTATCTCCTAAGCAGTAGT
* *
83301980 GGAGTAGGTCAAAGATTGTAGATTCTGTATCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGTGA
131 GGAGTAGGTCAAAGATTGTAGATTCTGTACCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCGA
* * *
83302045 ATCTTATCTTCCCAAGATAGTGGAGAAGCTGATTTAAGCCATTAGTCATATCTTCCTAAATAGTA
196 ATCTTATCTTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCATATCTTCCTAAACAATA
83302110 GTG
261 GTG
* * * * * * **
83302113 AAGTAGGTTAAAGATTTTGGATCCTATCTCTCTAAGCAGTAGCAGAGCAGATCAA
1 AAGTAGGTTGAAGATTATAGATTCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAA
83302168 CAACAGCGAA
Statistics
Matches: 280, Mismatches: 38, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
263 280 1.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (263 bp):
AAGTAGGTTGAAGATTATAGATTCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGAAAA
TCTTATCTTCCCAAGATAATGAAGAACCAGATTTAAACCATTAGTCCTATCTCCTAAGCAGTAGT
GGAGTAGGTCAAAGATTGTAGATTCTGTACCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCGA
ATCTTATCTTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCATATCTTCCTAAACAATA
GTG
Found at i:83302902 original size:23 final size:21
Alignment explanation
Indices: 83302855--83302902 Score: 51
Period size: 23 Copynumber: 2.2 Consensus size: 21
83302845 AGGTTGTTGC
* * *
83302855 TTTTTTTTCTTTTTTTTCGTC
1 TTTTTTTTATTTTTTTTCCTA
83302876 TTTTATTTTATTTTCTTTTCCTA
1 TTTT-TTTTATTTT-TTTTCCTA
83302899 TTTT
1 TTTT
83302903 CGAAACAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 4 0.18
22 8 0.36
23 10 0.45
ACGTcount: A:0.06, C:0.12, G:0.02, T:0.79
Consensus pattern (21 bp):
TTTTTTTTATTTTTTTTCCTA
Found at i:83303596 original size:12 final size:12
Alignment explanation
Indices: 83303581--83303610 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
83303571 TTAATAAATC
83303581 TATTATGATTAT
1 TATTATGATTAT
83303593 TATTATGATTAT
1 TATTATGATTAT
*
83303605 TTTTAT
1 TATTAT
83303611 TTATTTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (12 bp):
TATTATGATTAT
Found at i:83303712 original size:17 final size:18
Alignment explanation
Indices: 83303690--83303746 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
83303680 TGCATGCATT
*
83303690 TTTATTTTTATA-ATTTA
1 TTTATTTATATATATTTA
83303707 TTTATTTATATATATTTA
1 TTTATTTATATATATTTA
** *
83303725 CGTACTTATATATATTATA
1 TTTATTTATATATATT-TA
83303744 TTT
1 TTT
83303747 TATAATTTTT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
17 11 0.34
18 18 0.56
19 3 0.09
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.63
Consensus pattern (18 bp):
TTTATTTATATATATTTA
Found at i:83304149 original size:15 final size:15
Alignment explanation
Indices: 83304131--83304161 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
83304121 TTATTATTCG
*
83304131 TTTTTGTTCATATTA
1 TTTTTGTTCACATTA
83304146 TTTTTGTTCACATTA
1 TTTTTGTTCACATTA
83304161 T
1 T
83304162 CATATTTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.10, G:0.06, T:0.65
Consensus pattern (15 bp):
TTTTTGTTCACATTA
Found at i:83304412 original size:109 final size:109
Alignment explanation
Indices: 83304216--83304537 Score: 497
Period size: 109 Copynumber: 3.0 Consensus size: 109
83304206 AAGGAAAATT
* *
83304216 TTTCAAAGTAAGGCAATATTTTGCGTTTGGAAATTCAAGAAAACGTGCCCTAATGTGCTGGGTTT
1 TTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTT
* * *
83304281 TGATTTTTTTCGTTCAACCAAATAGCTAAATATCCTTTTAAAAA
66 CGATTTTTCTCGTTCAACCAAATAGCCAAATATCCTTTTAAAAA
*
83304325 TTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTTGAGAAAACGTGCCCTAATGTGCTGGGTTT
1 TTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTT
* *
83304390 CGATTTTTCTCGTTCGATCAAATAGCCAAATATCCTTTT-AAAA
66 CGATTTTTCTCGTTCAACCAAATAGCCAAATATCCTTTTAAAAA
* * * *
83304433 TTTCGAAATAAGACAATATTTTGCGTTTGGAAATTCGAGGAAATGTGCCCTAATGTGCTGGGTTT
1 TTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTT
* *
83304498 CGA--TTTCTCGTTTAACCAAATAGCCAAATATCCTCTTAAA
66 CGATTTTTCTCGTTCAACCAAATAGCCAAATATCCTTTTAAA
83304538 TTTTAATCCA
Statistics
Matches: 195, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
106 30 0.15
107 2 0.01
108 67 0.34
109 96 0.49
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (109 bp):
TTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTT
CGATTTTTCTCGTTCAACCAAATAGCCAAATATCCTTTTAAAAA
Found at i:83309991 original size:13 final size:13
Alignment explanation
Indices: 83309973--83309997 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
83309963 TCAAAGATCC
83309973 CCCCCCCCCCCCA
1 CCCCCCCCCCCCA
83309986 CCCCCCCCCCCC
1 CCCCCCCCCCCC
83309998 CACAACTCTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.96, G:0.00, T:0.00
Consensus pattern (13 bp):
CCCCCCCCCCCCA
Found at i:83309991 original size:14 final size:14
Alignment explanation
Indices: 83309972--83310000 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
83309962 ATCAAAGATC
83309972 CCCCCCCCCCCCCA
1 CCCCCCCCCCCCCA
83309986 CCCCCCCCCCCCCA
1 CCCCCCCCCCCCCA
83310000 C
1 C
83310001 AACTCTACCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.07, C:0.93, G:0.00, T:0.00
Consensus pattern (14 bp):
CCCCCCCCCCCCCA
Found at i:83317832 original size:96 final size:96
Alignment explanation
Indices: 83317668--83317855 Score: 241
Period size: 96 Copynumber: 2.0 Consensus size: 96
83317658 AAGGAGGAAT
* * **
83317668 ACGATTGAGTTATCACCTTTTGTGCAATGTTACTGGTACAATTCAAAAGATCACAAGGGTTTCCA
1 ACGATTGAGATATCACCTTTTGTACAATGTTACTGGTACAATTCAAAAGATCACAAGGAATTCCA
* *
83317733 ATGTTCAATTAAATATTCAAATAGAGAGAAG
66 ATGTCCAATTAAATATCCAAATAGAGAGAAG
* * ** * * * *
83317764 ACGATTGAGATATCACCTTTTGTACAATTTTATTGGTGTAGTTCAGAAGATCATAAGGAATTCTA
1 ACGATTGAGATATCACCTTTTGTACAATGTTACTGGTACAATTCAAAAGATCACAAGGAATTCCA
*
83317829 ATGTCCAATTAAATATCCAACTAGAGA
66 ATGTCCAATTAAATATCCAAATAGAGA
83317856 AGAAAGTAAG
Statistics
Matches: 77, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
96 77 1.00
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.32
Consensus pattern (96 bp):
ACGATTGAGATATCACCTTTTGTACAATGTTACTGGTACAATTCAAAAGATCACAAGGAATTCCA
ATGTCCAATTAAATATCCAAATAGAGAGAAG
Found at i:83324483 original size:61 final size:61
Alignment explanation
Indices: 83324381--83324497 Score: 155
Period size: 61 Copynumber: 1.9 Consensus size: 61
83324371 AGTATTTTTT
* * * *
83324381 ATGATGTTTTTAAACTAAATTTTTATGATGTTTTCTAAATGTCACAAAATATACAACATTTC
1 ATGATGTTTCTAAACT-AATTTTTATGACGCTTTCTAAATGTCACAAAATAAACAACATTTC
* *
83324443 ATGATGTTTCTAATCT-ATTTTTGATGACGCTTTCTTAATGTCACAAAATAAACAA
1 ATGATGTTTCTAAACTAATTTTT-ATGACGCTTTCTAAATGTCACAAAATAAACAA
83324498 ACAATTTGTG
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
60 6 0.12
61 28 0.58
62 14 0.29
ACGTcount: A:0.36, C:0.13, G:0.09, T:0.42
Consensus pattern (61 bp):
ATGATGTTTCTAAACTAATTTTTATGACGCTTTCTAAATGTCACAAAATAAACAACATTTC
Found at i:83326932 original size:37 final size:39
Alignment explanation
Indices: 83326891--83326987 Score: 100
Period size: 37 Copynumber: 2.6 Consensus size: 39
83326881 CCAAAAACAA
83326891 TAATAGTTTAATATTAAATTTAAT-TT-AA-T-ACTTATCT
1 TAATAGTTTAATATT-AATTTAATATTAAAGTGA-TTATCT
*
83326928 TAATAGTATT-TTATTAATTTAATATTAAAGTGATTATCT
1 TAATAGT-TTAATATTAATTTAATATTAAAGTGATTATCT
*
83326967 TAATA-TTAAAT-TTAATTTAAT
1 TAATAGTTTAATATTAATTTAAT
83326988 GTTTATCTTG
Statistics
Matches: 51, Mismatches: 3, Indels: 12
0.77 0.05 0.18
Matches are distributed among these distances:
36 8 0.16
37 24 0.47
38 6 0.12
39 12 0.24
40 1 0.02
ACGTcount: A:0.41, C:0.03, G:0.04, T:0.52
Consensus pattern (39 bp):
TAATAGTTTAATATTAATTTAATATTAAAGTGATTATCT
Found at i:83335331 original size:22 final size:20
Alignment explanation
Indices: 83335275--83335331 Score: 51
Period size: 24 Copynumber: 2.6 Consensus size: 20
83335265 TTACAGTTTG
* *
83335275 TTTTTTTGTTTGTTTTCTCTT
1 TTTTTTTCTTT-TTTTCTCTA
83335296 TTTTTTTCAGTTTTTTTCTTTCTA
1 TTTTTTTC--TTTTTTTC--TCTA
83335320 TTTTTTTCTTTT
1 TTTTTTTCTTTT
83335332 CTTTATATGC
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
21 7 0.23
22 9 0.30
23 3 0.10
24 11 0.37
ACGTcount: A:0.04, C:0.11, G:0.05, T:0.81
Consensus pattern (20 bp):
TTTTTTTCTTTTTTTCTCTA
Found at i:83335332 original size:15 final size:16
Alignment explanation
Indices: 83335294--83335333 Score: 52
Period size: 14 Copynumber: 2.8 Consensus size: 16
83335284 TTGTTTTCTC
83335294 TTTTT-TTTTC-AGTT
1 TTTTTCTTTTCTAGTT
83335308 TTTTTC-TTTCTA-TT
1 TTTTTCTTTTCTAGTT
83335322 TTTTTCTTTTCT
1 TTTTTCTTTTCT
83335334 TTATATGCGA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
14 17 0.74
15 6 0.26
ACGTcount: A:0.05, C:0.12, G:0.03, T:0.80
Consensus pattern (16 bp):
TTTTTCTTTTCTAGTT
Found at i:83340387 original size:6 final size:6
Alignment explanation
Indices: 83340376--83340444 Score: 70
Period size: 6 Copynumber: 11.7 Consensus size: 6
83340366 CAATCTAAAA
**
83340376 AAAATC AAAATC AAAATC AAAA-- AAGAAGA AAAATC AAAATC AAAATC
1 AAAATC AAAATC AAAATC AAAATC AA-AATC AAAATC AAAATC AAAATC
* * *
83340423 AAAGTC AAAATG AAAATG AAAA
1 AAAATC AAAATC AAAATC AAAA
83340445 AAGAGAAAGA
Statistics
Matches: 55, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
4 2 0.04
5 2 0.04
6 49 0.89
7 2 0.04
ACGTcount: A:0.70, C:0.10, G:0.07, T:0.13
Consensus pattern (6 bp):
AAAATC
Found at i:83340393 original size:23 final size:22
Alignment explanation
Indices: 83340367--83340446 Score: 79
Period size: 23 Copynumber: 3.5 Consensus size: 22
83340357 GTTTAGATCC
83340367 AATCTAAAAAAAATCAAAATCAA
1 AATC-AAAAAAAATCAAAATCAA
**
83340390 AATCAAAAAAGAAGAAAAATCAA
1 AATCAAAAAA-AATCAAAATCAA
* *
83340413 AATCAAAATCAAAGTCAAAATGAA
1 AATCAAAA--AAAATCAAAATCAA
*
83340437 AATGAAAAAA
1 AATCAAAAAA
83340447 GAGAAAGAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
22 8 0.17
23 22 0.47
24 15 0.32
25 2 0.04
ACGTcount: A:0.70, C:0.10, G:0.06, T:0.14
Consensus pattern (22 bp):
AATCAAAAAAAATCAAAATCAA
Found at i:83340476 original size:19 final size:21
Alignment explanation
Indices: 83340435--83340481 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
83340425 AGTCAAAATG
*
83340435 AAAATGAAAAAAGAGAAAGAA
1 AAAAGGAAAAAAGAGAAAGAA
*
83340456 AAAAGGAAAAACG-GAAA-AA
1 AAAAGGAAAAAAGAGAAAGAA
83340475 AAAAGGA
1 AAAAGGA
83340482 GAGGCCAAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 9 0.38
20 4 0.17
21 11 0.46
ACGTcount: A:0.74, C:0.02, G:0.21, T:0.02
Consensus pattern (21 bp):
AAAAGGAAAAAAGAGAAAGAA
Found at i:83341351 original size:15 final size:15
Alignment explanation
Indices: 83341333--83341364 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
83341323 CAAAAAATGG
83341333 AAAAATGAAAA-TAA
1 AAAAATGAAAAGTAA
83341347 AAAAATGAAAAGTAA
1 AAAAATGAAAAGTAA
83341362 AAA
1 AAA
83341365 TGGACAGGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.78, C:0.00, G:0.09, T:0.12
Consensus pattern (15 bp):
AAAAATGAAAAGTAA
Found at i:83341364 original size:21 final size:22
Alignment explanation
Indices: 83341324--83341365 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
83341314 ATTTTGAGTC
*
83341324 AAAAAATGGAAAAATGAAAATA
1 AAAAAATGGAAAAATAAAAATA
*
83341346 AAAAAAT-GAAAAGTAAAAAT
1 AAAAAATGGAAAAATAAAAAT
83341366 GGACAGGCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.74, C:0.00, G:0.12, T:0.14
Consensus pattern (22 bp):
AAAAAATGGAAAAATAAAAATA
Found at i:83342688 original size:44 final size:44
Alignment explanation
Indices: 83342625--83342920 Score: 405
Period size: 44 Copynumber: 6.7 Consensus size: 44
83342615 AATCACAAAA
* * *
83342625 CCTAGCTCCCTGACCAGCAGTGGAATAGGTTTAAGATTGTAAGT
1 CCTAACTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGCAAGT
* * * *
83342669 CCTAGCTCTCTGACCAGCAGTGGAATAGGTTGAAGACTGTAAGT
1 CCTAACTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGCAAGT
* * * *
83342713 CCTATCTCCCTGACTAGCAGAGGAATAGGTAGAAGATTGCAAGT
1 CCTAACTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGCAAGT
* *
83342757 CCTAACTCCCTGACCAGCAGTGGAATAGGCTGAAGATTACAAGT
1 CCTAACTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGCAAGT
* *
83342801 CCTAACTCCTTGACCAGCAGTGGAATAGGTAGAAGATTGCAAGT
1 CCTAACTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGCAAGT
*
83342845 CCTAACTCCCTGACCAGCAGTGGAATAGGTTGAAGATTACAAGT
1 CCTAACTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGCAAGT
** *
83342889 CCTATA-TCCCTGGTCAGCAGTAGAATAGGTTG
1 CCTA-ACTCCCTGACCAGCAGTGGAATAGGTTG
83342921 GGAAATTACA
Statistics
Matches: 225, Mismatches: 26, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
44 224 1.00
45 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.24
Consensus pattern (44 bp):
CCTAACTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGCAAGT
Found at i:83343113 original size:129 final size:129
Alignment explanation
Indices: 83342883--83343875 Score: 1535
Period size: 129 Copynumber: 7.7 Consensus size: 129
83342873 GTTGAAGATT
* *
83342883 ACAAGTCCTATATCCCTGGTCAGCAGTAGAATAGGTTGGGAAATTACAGATCTTATCTCCCTAAG
1 ACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAG
* *
83342948 CAATAGCGGAGCAGATCGAATACGGCGAATCTTATCTTCAAGTGTAAGGAAGCATATTTAAGCC
66 CAATAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCC
83343012 ACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAG
1 ACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAG
* * *
83343077 CAATAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGAAAGGAAACAGATTTAAGCG
66 CAATAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCC
* *
83343141 ACAAGTCCTATATCCCTGGTCCGCAGTAGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAG
1 ACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAG
*
83343206 CAATAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCG
66 CAATAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCC
* *
83343270 ACAAGTCCTATATCCCTGGTTAGTAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAG
1 ACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAG
* * *
83343335 CAATAGCGGAGTAGATCGAAGACGACAAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCC
66 CAATAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCC
*
83343399 ACAAGTCCTATATCCCTGGTCAACAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAG
1 ACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAG
* * ** *
83343464 CAATAGCGGAGCAGATCGAAGATGACGAATCTTATCTTCAAAAGTAAGGAAACAGATTTAAGCC
66 CAATAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCC
*
83343528 ACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGT-TAACCTAA
1 ACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCT-CCCTAA
* * * **
83343592 GCAGTAGCGGAGCAGATCAAAGACGGCGAATCTTATCTTCAAGAGTAAAAAAGCAGATTTAAGCC
65 GCAATAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCC
* *
83343657 ACAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTT-GAAAATTACAGATCTTGTCTCCCTAAG
1 ACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAG
* * * * * *
83343721 CAGTATCAGAGCAGATCGAAGACGACGAATCTTATCTTCAAGAGTAAGGAAGCAGAATTAAGCC
66 CAATAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCC
* * * ** *
83343785 ACAAGTCCTATCTCCTTGGTCAGCAGTAGAATAGGTT-GGAAA-TATCAGATCTCATCTCCCTAC
1 ACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTA-CAGATCTTGTCTCCCTAA
* * * *
83343848 GTAATAGTGGAGCAGATCAAAGATGGCG
65 GCAATAGCGGAGCAGATCGAAGACGGCG
83343876 GATTTTACCT
Statistics
Matches: 799, Mismatches: 62, Indels: 7
0.92 0.07 0.01
Matches are distributed among these distances:
127 2 0.00
128 155 0.19
129 642 0.80
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.24
Consensus pattern (129 bp):
ACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAG
CAATAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCC
Found at i:83346564 original size:23 final size:23
Alignment explanation
Indices: 83346538--83346584 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
83346528 AATGGTTAGT
83346538 AAGTTCGTATAACATGGAATTTA
1 AAGTTCGTATAACATGGAATTTA
* **
83346561 AAGTTTGTATAATGTGGAATTTA
1 AAGTTCGTATAACATGGAATTTA
83346584 A
1 A
83346585 CTTACCATTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.38, C:0.04, G:0.19, T:0.38
Consensus pattern (23 bp):
AAGTTCGTATAACATGGAATTTA
Found at i:83346919 original size:25 final size:25
Alignment explanation
Indices: 83346891--83346945 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
83346881 AGTACTCATT
83346891 CGAGCACATAAACGGGAAGCTCAAA
1 CGAGCACATAAACGGGAAGCTCAAA
* * * *
83346916 CGAGC-CATTATCGGGAAGTTTAAA
1 CGAGCACATAAACGGGAAGCTCAAA
83346940 CGAGCA
1 CGAGCA
83346946 ATATCAGGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
24 20 0.80
25 5 0.20
ACGTcount: A:0.38, C:0.22, G:0.25, T:0.15
Consensus pattern (25 bp):
CGAGCACATAAACGGGAAGCTCAAA
Found at i:83347140 original size:25 final size:25
Alignment explanation
Indices: 83347082--83347141 Score: 79
Period size: 24 Copynumber: 2.4 Consensus size: 25
83347072 CACAACCGAT
*
83347082 CGGGATGCTC-CGAAGAGCTATTAA
1 CGGGATGCTCACGAAGAACTATTAA
*
83347106 CGGGAAGCTCAC-AAGAACTATATAA
1 CGGGATGCTCACGAAGAACTAT-TAA
83347131 CGGGATGCTCA
1 CGGGATGCTCA
83347142 TGAGAGCTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 17 0.55
25 14 0.45
ACGTcount: A:0.33, C:0.22, G:0.27, T:0.18
Consensus pattern (25 bp):
CGGGATGCTCACGAAGAACTATTAA
Found at i:83347164 original size:24 final size:24
Alignment explanation
Indices: 83347094--83347164 Score: 70
Period size: 24 Copynumber: 2.9 Consensus size: 24
83347084 GGATGCTCCG
*
83347094 AAGAGCTATTAACGGGAAGCTCAC
1 AAGAGCTAATAACGGGAAGCTCAC
* * *
83347118 AAGAACTATATAACGGGATGCTCAT
1 AAGAGCTA-ATAACGGGAAGCTCAC
* * *
83347143 GAGAGCTAATATCGGGACGCTC
1 AAGAGCTAATAACGGGAAGCTC
83347165 TTTCCAGCTA
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
24 19 0.50
25 19 0.50
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (24 bp):
AAGAGCTAATAACGGGAAGCTCAC
Found at i:83353194 original size:18 final size:19
Alignment explanation
Indices: 83353173--83353212 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
83353163 ATCATAAGGA
*
83353173 AAATTAAA-AAATAAAATG
1 AAATTAAAGAAACAAAATG
*
83353191 AAATTAAAGAACCAAAATG
1 AAATTAAAGAAACAAAATG
83353210 AAA
1 AAA
83353213 CGTGCGTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.70, C:0.05, G:0.07, T:0.17
Consensus pattern (19 bp):
AAATTAAAGAAACAAAATG
Found at i:83358168 original size:3 final size:3
Alignment explanation
Indices: 83358160--83358189 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
83358150 TTACTTAAAC
83358160 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
83358190 AAGAATGAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:83359349 original size:136 final size:136
Alignment explanation
Indices: 83359105--83359376 Score: 544
Period size: 136 Copynumber: 2.0 Consensus size: 136
83359095 GTGATTTTGT
83359105 GCAGTTAAAACCCAATTATAAAAACACTGCAATAAATGACAAATGAGTAAGCATCTCCCAAAGTT
1 GCAGTTAAAACCCAATTATAAAAACACTGCAATAAATGACAAATGAGTAAGCATCTCCCAAAGTT
83359170 TTTAAAGATTCCAAATTAACAGGGACCAAGTTAGCAATAGCATCAATATATACAATCTCTTGAAA
66 TTTAAAGATTCCAAATTAACAGGGACCAAGTTAGCAATAGCATCAATATATACAATCTCTTGAAA
83359235 GTATAG
131 GTATAG
83359241 GCAGTTAAAACCCAATTATAAAAACACTGCAATAAATGACAAATGAGTAAGCATCTCCCAAAGTT
1 GCAGTTAAAACCCAATTATAAAAACACTGCAATAAATGACAAATGAGTAAGCATCTCCCAAAGTT
83359306 TTTAAAGATTCCAAATTAACAGGGACCAAGTTAGCAATAGCATCAATATATACAATCTCTTGAAA
66 TTTAAAGATTCCAAATTAACAGGGACCAAGTTAGCAATAGCATCAATATATACAATCTCTTGAAA
83359371 GTATAG
131 GTATAG
83359377 ACCAAGTTAA
Statistics
Matches: 136, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
136 136 1.00
ACGTcount: A:0.44, C:0.18, G:0.13, T:0.25
Consensus pattern (136 bp):
GCAGTTAAAACCCAATTATAAAAACACTGCAATAAATGACAAATGAGTAAGCATCTCCCAAAGTT
TTTAAAGATTCCAAATTAACAGGGACCAAGTTAGCAATAGCATCAATATATACAATCTCTTGAAA
GTATAG
Found at i:83365458 original size:7 final size:6
Alignment explanation
Indices: 83365449--83365509 Score: 58
Period size: 6 Copynumber: 10.7 Consensus size: 6
83365439 AAGAAAAAGA
* * *
83365449 AAAATC AAAATC AAAATC AAAGTC AAAATG AAAAT- GAAA-- AAAATC
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC
83365494 AAAAATC AAAAT- AAAA
1 -AAAATC AAAATC AAAA
83365510 AAAAAACAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
4 3 0.06
5 7 0.15
6 31 0.66
7 6 0.13
ACGTcount: A:0.70, C:0.10, G:0.05, T:0.15
Consensus pattern (6 bp):
AAAATC
Found at i:83365515 original size:27 final size:27
Alignment explanation
Indices: 83365461--83365515 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
83365451 AATCAAAATC
* **
83365461 AAAATCAAAGTCAAAATGAAAATGAAA
1 AAAATCAAAATCAAAATGAAAAAAAAA
83365488 AAAATCAAAAATCAAAAT-AAAAAAAAA
1 AAAATC-AAAATCAAAATGAAAAAAAAA
83365515 A
1 A
83365516 CAAAAAGAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 14 0.58
28 10 0.42
ACGTcount: A:0.75, C:0.07, G:0.05, T:0.13
Consensus pattern (27 bp):
AAAATCAAAATCAAAATGAAAAAAAAA
Found at i:83365537 original size:46 final size:45
Alignment explanation
Indices: 83365438--83365556 Score: 109
Period size: 46 Copynumber: 2.6 Consensus size: 45
83365428 ATCAAAAAGG
* * ** * *
83365438 GAAGAAAAA-GAAAAATCAAAATCAAAATCAAAGTCAAAATGAAAAT
1 GAAGAAAAATCAAAAATCAAAAT-AAAA-AAAAAACAAAAAGAAAAA
83365484 GAA-AAAAATCAAAAATCAAAATAAAAAAAAAACAAAAAGAAGAAA
1 GAAGAAAAATCAAAAATCAAAATAAAAAAAAAACAAAAAGAA-AAA
* *
83365529 GAAGAAAAAATC-AAGATCAAAATGAAAA
1 GAAG-AAAAATCAAAAATCAAAATAAAAA
83365557 TGAGAAAAAG
Statistics
Matches: 61, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
44 11 0.18
45 14 0.23
46 29 0.48
47 7 0.11
ACGTcount: A:0.72, C:0.08, G:0.10, T:0.10
Consensus pattern (45 bp):
GAAGAAAAATCAAAAATCAAAATAAAAAAAAAACAAAAAGAAAAA
Found at i:83366510 original size:7 final size:7
Alignment explanation
Indices: 83366498--83366549 Score: 81
Period size: 7 Copynumber: 7.7 Consensus size: 7
83366488 AAAATTAAAT
83366498 AAATGAA
1 AAATGAA
83366505 AAATGAA
1 AAATGAA
83366512 AAATG-A
1 AAATGAA
83366518 AAATGAA
1 AAATGAA
83366525 AAATGAA
1 AAATGAA
83366532 AAATG-A
1 AAATGAA
*
83366538 AAGTGAA
1 AAATGAA
83366545 AAATG
1 AAATG
83366550 GAGAGGCTAA
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
6 11 0.27
7 30 0.73
ACGTcount: A:0.67, C:0.00, G:0.17, T:0.15
Consensus pattern (7 bp):
AAATGAA
Found at i:83366522 original size:13 final size:14
Alignment explanation
Indices: 83366498--83366549 Score: 81
Period size: 13 Copynumber: 3.9 Consensus size: 14
83366488 AAAATTAAAT
83366498 AAATGAAAAATGAA
1 AAATGAAAAATGAA
83366512 AAATG-AAAATGAA
1 AAATGAAAAATGAA
83366525 AAATGAAAAATG-A
1 AAATGAAAAATGAA
*
83366538 AAGTGAAAAATG
1 AAATGAAAAATG
83366550 GAGAGGCTAA
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
13 25 0.69
14 11 0.31
ACGTcount: A:0.67, C:0.00, G:0.17, T:0.15
Consensus pattern (14 bp):
AAATGAAAAATGAA
Found at i:83366523 original size:20 final size:20
Alignment explanation
Indices: 83366498--83366549 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
83366488 AAAATTAAAT
83366498 AAATGAAAAATGAAAAATGA
1 AAATGAAAAATGAAAAATGA
83366518 AAATGAAAAATGAAAAATGA
1 AAATGAAAAATGAAAAATGA
*
83366538 AAGTGAAAAATG
1 AAATGAAAAATG
83366550 GAGAGGCTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.67, C:0.00, G:0.17, T:0.15
Consensus pattern (20 bp):
AAATGAAAAATGAAAAATGA
Found at i:83368032 original size:175 final size:175
Alignment explanation
Indices: 83367741--83368908 Score: 1482
Period size: 175 Copynumber: 6.7 Consensus size: 175
83367731 GTTCATTATA
* * * *
83367741 CAGGTCTTATCTCCCTGAGATTACAGTGGAGCAGACTGAAGAATTGCAAATCCTATCTCCCTGAG
1 CAGGTCTTATCTCCCTGAGATTACAGTGGAGCAGACCGAAGAATTTCAGATCTTATCTCCCTGAG
** ** *
83367806 ATTACAGCGGAGCAGATCAAATATGGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAA
66 ATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAA
** * *
83367871 ACCAATGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCAC
131 ATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCAT
* *
83367916 CAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAG
1 CAGGTCTTATCTCCCTGAGATTACAGTGGAGCAGACCGAAGAATTTCAGATCTTATCTCCCTGAG
* * * *
83367981 ATTACAGTGGAGCAGATTGAAGATAGTAATCCTATCTCCTTGAGATTACAGTGGAGTGGATTAAA
66 ATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAA
83368046 AT-AAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCAT
131 ATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCAT
*
83368090 CAGGTCTTATCTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAG
1 CAGGTCTTATCTCCCTGAGATTACAGTGGAGCAGACCGAAGAATTTCAGATCTTATCTCCCTGAG
83368155 ATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAA
66 ATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAA
*
83368220 ATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCAC
131 ATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCAT
* *
83368265 CAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAG
1 CAGGTCTTATCTCCCTGAGATTACAGTGGAGCAGACCGAAGAATTTCAGATCTTATCTCCCTGAG
83368330 ATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAA
66 ATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAA
**
83368395 ATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTGT
131 ATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCAT
* * * ** * * *
83368440 CAGATCTTATCTCCCTGAGATTATAGCGGAGCAGATTGAAG-CTAGT-A-ATCCTATCTCCCTGA
1 CAGGTCTTATCTCCCTGAGATTACAGTGGAGCAGACCGAAGAAT-TTCAGATCTTATCTCCCTGA
* * * ** * * * ** **
83368502 AATTACAGTGGAGCGGATT-AAAATAAAG-GATCTTATCTCTCTGA-AGTTACAGCAGAGTAGA-
65 GATTACAGCGGAGCAGATTGAAGCT--AGTAATCCTATCTCCCTGAGA-TTACAGTGGAGCGGAT
*** * * * * ** * *
83368563 TCGCAT-CAGG-TCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTT
127 TAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATC---GCA--T
* * ** * *
83368615 CAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCA---GAGATCTTATCTCCCTGA
1 CAGGTCTTATCTCCCTGAGATTACAGTGGAGCAGACCGAAG-AATTTCAGATCTTATCTCCCTGA
*
83368677 GATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAA
65 GATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAA
*
83368742 AATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCAT
130 AATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCAT
* * *
83368788 CAGGTCTTATCACCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAG
1 CAGGTCTTATCTCCCTGAGATTACAGTGGAGCAGACCGAAGAATTTCAGATCTTATCTCCCTGAG
* * * * * *
83368853 GTTACAGTGGAGCAGATTGAAGCCAG-AGATCTTATCTCTCTGAGATTACAGCGGAG
66 ATTACAGCGGAGCAGATTGAAGCTAGTA-ATCCTATCTCCCTGAGATTACAGTGGAG
83368909 TAGATTGAAG
Statistics
Matches: 866, Mismatches: 103, Indels: 48
0.85 0.10 0.05
Matches are distributed among these distances:
170 27 0.03
171 3 0.00
172 8 0.01
173 92 0.11
174 175 0.20
175 524 0.61
176 7 0.01
177 3 0.00
178 27 0.03
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (175 bp):
CAGGTCTTATCTCCCTGAGATTACAGTGGAGCAGACCGAAGAATTTCAGATCTTATCTCCCTGAG
ATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAA
ATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCAT
Found at i:83368470 original size:304 final size:304
Alignment explanation
Indices: 83368135--83368689 Score: 959
Period size: 304 Copynumber: 1.8 Consensus size: 304
83368125 CCGAAGAATT
*
83368135 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAAA
*
83368200 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCAC
66 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCAC
** *
83368265 CAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAG
131 CAGGTCTTATCACCCTGAGATTACAGGGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAG
* *
83368330 ATTACAGCGGAGCAGATTGAAGCTAGTA-ATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAA
196 ATTACAGCGGAGCAGATTGAAGCCAG-AGATCCTATCTCCCTGAGATTACAGCGGAGCGGATTAA
83368394 AATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTG
260 AATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTG
*
83368439 TCAGATCTTATCTCCCTGAGATTATAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAAA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAAA
*
83368504 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCAT
66 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCAC
* **
83368569 CAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAG
131 CAGGTCTTATCACCCTGAGATTACAGGGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAG
* * *
83368634 GTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCGGAG
196 ATTACAGCGGAGCAGATTGAAGCCAGAGATCCTATCTCCCTGAGATTACAGCGGAG
83368690 TAGATTGAAG
Statistics
Matches: 235, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
303 1 0.00
304 234 1.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (304 bp):
TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAAA
TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCAC
CAGGTCTTATCACCCTGAGATTACAGGGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAG
ATTACAGCGGAGCAGATTGAAGCCAGAGATCCTATCTCCCTGAGATTACAGCGGAGCGGATTAAA
ATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTG
Found at i:83368501 original size:219 final size:218
Alignment explanation
Indices: 83368401--83369036 Score: 1042
Period size: 219 Copynumber: 2.9 Consensus size: 218
83368391 TAAAATAAAG
* * * * * * * *
83368401 GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCG-TGTC-AGATCTTATCTCCCTGAGATTAT
1 GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAAGATCTTATCTCCCTGAGATTAC
* *
83368464 AGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAAATTACAGTGGAGCGGATTAAAATAAA
66 AGCGGAGTAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAA
83368529 GGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTACA
131 GGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTACA
*
83368594 GGGGAGTAGACCGAAGAATTTCA
196 GTGGAGTAGACCGAAGAATTTCA
83368617 GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTA
1 GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCA-AGATCTTATCTCCCTGAGATTA
83368682 CAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAA
65 CAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAA
83368747 AGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTAC
130 AGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTAC
83368812 AGTGGAGTAGACCGAAGAATTTCA
195 AGTGGAGTAGACCGAAGAATTTCA
*
83368836 GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTA
1 GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCA-AGATCTTATCTCCCTGAGATTA
* *
83368901 CAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAGATTACAGTGGAGTGGATTAAAATAA
65 CAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAA
* * * ** * * *
83368966 AGGATCTTATCTCTTTGAAGTTACAGTAGAGGAGATCGTGTCAGGTCTTATCCCCCTGATGTTGC
130 AGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTAC
83369031 AGTGGA
195 AGTGGA
83369037 ACAGACTGAA
Statistics
Matches: 395, Mismatches: 22, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
216 31 0.08
217 2 0.01
219 362 0.92
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (218 bp):
GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAAGATCTTATCTCCCTGAGATTAC
AGCGGAGTAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAA
GGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTACA
GTGGAGTAGACCGAAGAATTTCA
Found at i:83368814 original size:304 final size:302
Alignment explanation
Indices: 83368137--83368818 Score: 845
Period size: 304 Copynumber: 2.2 Consensus size: 302
83368127 GAAGAATTTC
* *
83368137 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATT
1 AGATCTTATCTCCCTGAGATTACAGCAGAGCAGATCGAAGCTAG-AATCCTATCTCCCTGAGATT
*
83368202 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCACCA
65 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCACCA
** *
83368267 GGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGAT
130 GGTCTTATCACCCTGAGATTACAGGGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGAT
* * *
83368332 TACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAAT
195 TACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGCGGAGCAGATTAAAAT
* * * * **** *
83368397 AAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTGTC
260 -AAGAATCCTATCTCCCTGAAGTTACAGTAGAGCAGATAAAATA
* * * *
83368441 AGATCTTATCTCCCTGAGATTATAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAAATT
1 AGATCTTATCTCCCTGAGATTACAGCAGAGCAGATCGAAGCTAG-AATCCTATCTCCCTGAGATT
*
83368506 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCA
65 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCACCA
* ** *
83368571 GGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGT
130 GGTCTTATCACCCTGAGATTACAGGGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGAT
* * * *
83368636 TACAGTGGAGCAGATTGAAGCCAG-AGATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAG
195 TACAGCGGAGCAGATTGAAGCCAGTA-ATCCTATCTCCCTGAGATTACAGCGGAGCAGATT-AAA
* * *
83368700 CT-AGTAATCCTATCTCCCTG-AGATTACAGTGGAGCGGATTAAAATAA
258 ATAAG-AATCCTATCTCCCTGAAG-TTACAGTAGAGCAGA-TAAAAT-A
* * * * * * * *
83368747 AGGATCTTATCTCTCTGA-AGTTACAGCAGAGTAGATCGCATC-AG-GTCTTATCACCCTGAGGT
1 A-GATCTTATCTCCCTGAGA-TTACAGCAGAGCAGATCGAAGCTAGAATCCTATCTCCCTGAGAT
83368809 TACAGTGGAG
64 TACAGTGGAG
83368819 TAGACCGAAG
Statistics
Matches: 328, Mismatches: 42, Indels: 16
0.85 0.11 0.04
Matches are distributed among these distances:
303 5 0.02
304 283 0.86
305 5 0.02
306 4 0.01
307 31 0.09
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (302 bp):
AGATCTTATCTCCCTGAGATTACAGCAGAGCAGATCGAAGCTAGAATCCTATCTCCCTGAGATTA
CAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCACCAG
GTCTTATCACCCTGAGATTACAGGGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATT
ACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGCGGAGCAGATTAAAATA
AGAATCCTATCTCCCTGAAGTTACAGTAGAGCAGATAAAATA
Found at i:83368979 original size:44 final size:43
Alignment explanation
Indices: 83367741--83368978 Score: 607
Period size: 44 Copynumber: 28.3 Consensus size: 43
83367731 GTTCATTATA
*
83367741 CAGG-TCTTATCTCCCTGAGATTACAGTGGAGCAGACTGAAGAATT
1 CAGGATCTTATCTCCCTGAGATTACAGTGGAGCAGA-TTAA-AA-T
* * * *
83367786 GCA-AATCCTATCTCCCTGAGATTACAGCGGAGCAGA-TCAAAT
1 -CAGGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAAT
* * *
83367828 -ATGGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAAC
1 CA-GG--ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAAT
* * * * *** *
83367873 CAATGATCTTATCTCTCTGA-AGTTACAGTAGAGTAGA-TCGCAC
1 C-AGGATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAAT
* * **
83367916 CAGG-TCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTT
1 CAGGATCTTATCTCCCTGAGATTACAGTGGAGCAGA-TTAA-AA--T
*
83367962 CA-GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGAT
1 CAGGATCTTATCTCCCTGAGATTACAGTGGAGCAGATT-AAAAT
* * * **
83368005 -AGTAATCCTATCTCCTTGAGATTACAGTGGAGTGGATTAAAAT
1 CAG-GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAAT
* * * * ***
83368048 AAGGATCTTATCTCTCTGA-AGTTACAGTAGAGTAGA-TCGCAT
1 CAGGATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAAT
* **
83368090 CAGG-TCTTATCTCCCTGAGATTACAGTGGAACAGACCGAAGAATTT
1 CAGGATCTTATCTCCCTGAGATTACAGTGGAGCAGA-TTAA-AA--T
* * *
83368136 CA-GATCTTATCTCCCTGAGATTACAGCGGAGCAGATT-GAAG
1 CAGGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAAT
* * *
83368177 CTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAAT
1 C-AG-GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAAT
* * * * *** *
83368222 AAAGGATCTTATCTCTCTGA-AGTTACAGTAGAGTAGA-TCGCAC
1 -CAGGATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAAT
* * **
83368265 CAGG-TCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTT
1 CAGGATCTTATCTCCCTGAGATTACAGTGGAGCAGA-TTAA-AA--T
* * *
83368311 CA-GATCTTATCTCCCTGAGATTACAGCGGAGCAGATT-GAAG
1 CAGGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAAT
* * *
83368352 CTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAAT
1 C-AG-GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAAT
* * * * ****
83368397 AAAGGATCTTATCTCTCTGA-AGTTACAGTAGAGTAGA-TCGTGT
1 -CAGGATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAAT
* * * *
83368440 CA-GATCTTATCTCCCTGAGATTATAGCGGAGCAGATT-GAAG
1 CAGGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAAT
* * * *
83368481 CTAGTAATCCTATCTCCCTGAAATTACAGTGGAGCGGATTAAAAT
1 C-AG-GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAAT
* * ** * ***
83368526 AAAGGATCTTATCTCTCTGA-AGTTACAGCAGAGTAGA-TCGCAT
1 -CAGGATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAAT
* * * * **
83368569 CAGG-TCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTT
1 CAGGATCTTATCTCCCTGAGATTACAGTGGAGCAGA-TTAA-AA--T
* * **
83368615 CA-GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGC
1 CAGGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAAT
* * * *
83368657 CAGAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATT-GAAG
1 CAG-GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAAT
* * *
83368700 CTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAAT
1 C-AG-GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAAT
* * ** * ***
83368745 AAAGGATCTTATCTCTCTGA-AGTTACAGCAGAGTAGA-TCGCAT
1 -CAGGATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAAT
* * * **
83368788 CAGG-TCTTATCACCCTGAGGTTACAGTGGAGTAGACCGAAGAATTT
1 CAGGATCTTATCTCCCTGAGATTACAGTGGAGCAGA-TTAA-AA--T
* * **
83368834 CA-GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGC
1 CAGGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAAT
* * * * *
83368876 CAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATT-GAAG
1 CAG-GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAAT
* * * **
83368919 CTAGTAATCCTATCTCTCTGAGATTACAGTGGAGTGGATTAAAAT
1 C-AG-GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAAT
*
83368964 AAAGGATCTTATCTC
1 -CAGGATCTTATCTC
83368979 TTTGAAGTTA
Statistics
Matches: 890, Mismatches: 222, Indels: 162
0.70 0.17 0.13
Matches are distributed among these distances:
40 1 0.00
41 153 0.17
42 33 0.04
43 59 0.07
44 421 0.47
45 32 0.04
46 190 0.21
47 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (43 bp):
CAGGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAAT
Found at i:83369396 original size:16 final size:17
Alignment explanation
Indices: 83369371--83369410 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
83369361 GCCCAAATGC
83369371 CAAA-CCCAAAT-AAAA
1 CAAAGCCCAAATCAAAA
*
83369386 CAAAGCCCAAATCCAAA
1 CAAAGCCCAAATCAAAA
83369403 C-AAGCCCA
1 CAAAGCCCA
83369411 TTACAGCAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 4 0.18
16 14 0.64
17 4 0.18
ACGTcount: A:0.55, C:0.35, G:0.05, T:0.05
Consensus pattern (17 bp):
CAAAGCCCAAATCAAAA
Found at i:83382543 original size:21 final size:20
Alignment explanation
Indices: 83382517--83382573 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 20
83382507 AATAAGTAAT
83382517 TAATAATAAAATAAAGTAAAA
1 TAATAATAAAATAAAG-AAAA
*
83382538 TAATAAATAAAGTAAAGAAAA
1 TAAT-AATAAAATAAAGAAAA
83382559 TAATAATAATAATAA
1 TAATAATAA-AATAA
83382574 TTGGGTTGCC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 5 0.16
21 16 0.50
22 11 0.34
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.25
Consensus pattern (20 bp):
TAATAATAAAATAAAGAAAA
Found at i:83382547 original size:17 final size:17
Alignment explanation
Indices: 83382505--83382553 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 17
83382495 TATTAATATC
83382505 TAAAT-AAGTAATTAATAA
1 TAAATAAAGTAA--AATAA
83382523 TAAAATAAAGTAAAATAA
1 T-AAATAAAGTAAAATAA
83382541 TAAATAAAGTAAA
1 TAAATAAAGTAAA
83382554 GAAAATAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
17 12 0.41
18 7 0.24
19 4 0.14
20 6 0.21
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (17 bp):
TAAATAAAGTAAAATAA
Done.