Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 273 of 313
Found at i:83382564 original size:17 final size:17
Alignment explanation
Indices: 83382525--83382561 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
83382515 ATTAATAATA
*
83382525 AAATAAAGTAAAATAAT
1 AAATAAAGTAAAAAAAT
83382542 AAATAAAGTAAAGAAAAT
1 AAATAAAGTAAA-AAAAT
83382560 AA
1 AA
83382562 TAATAATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.73, C:0.00, G:0.08, T:0.19
Consensus pattern (17 bp):
AAATAAAGTAAAAAAAT
Found at i:83383840 original size:38 final size:35
Alignment explanation
Indices: 83383785--83383857 Score: 101
Period size: 38 Copynumber: 2.0 Consensus size: 35
83383775 TTTCCTTGTC
83383785 CTCTTTCCCACTACGACACGGGTTGAATCATTCTG
1 CTCTTTCCCACTACGACACGGGTTGAATCATTCTG
* *
83383820 NNNCTCTTTCCCTCTTCGACACGGGTTGAATCATTCTG
1 ---CTCTTTCCCACTACGACACGGGTTGAATCATTCTG
83383858 GAAATAGAGG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.16, C:0.30, G:0.16, T:0.33
Consensus pattern (35 bp):
CTCTTTCCCACTACGACACGGGTTGAATCATTCTG
Found at i:83389999 original size:70 final size:71
Alignment explanation
Indices: 83389921--83390099 Score: 342
Period size: 71 Copynumber: 2.5 Consensus size: 71
83389911 GGCGTGCCCC
*
83389921 GAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTT-AAAAAATTTAAAAATACCTCAACG
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTAAAAAAATTTAAAAATACCTCAACG
83389985 TGTCTT
66 TGTCTT
83389991 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTAAAAAAATTTAAAAATACCTCAACG
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTAAAAAAATTTAAAAATACCTCAACG
83390056 TGTCTT
66 TGTCTT
83390062 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTT
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTT
83390100 GAAAAACAGA
Statistics
Matches: 107, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 39 0.36
71 68 0.64
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (71 bp):
GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTAAAAAAATTTAAAAATACCTCAACG
TGTCTT
Found at i:83390117 original size:14 final size:14
Alignment explanation
Indices: 83390098--83390132 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
83390088 GAGTTGATTT
83390098 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
**
83390112 TTGAAAAGTAGAAA
1 TTGAAAAACAGAAA
83390126 TTGAAAA
1 TTGAAAA
83390133 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.60, C:0.03, G:0.17, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:83390368 original size:85 final size:87
Alignment explanation
Indices: 83390224--83390471 Score: 308
Period size: 85 Copynumber: 2.8 Consensus size: 87
83390214 AACAGAAATT
* * *
83390224 AAAAACAGAATTTGAAAAGACCTCAGCGTGTGGCCTGAGACTCAACTCACCTCTTGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGC-TGTGGCCTGAGGCTCAACTCACCTCTTGCAATATGAG
*
83390289 TTGATTTGAAAAG-TAGAATT-AG
65 TTGATTTGAAAAGATAG-ATTGAA
* * * *
83390311 TAAAGCAGAAATTGAAAATACCTCAGC-GT-GCCTTGAGGCTCAACTCACCTCTCGCAATATAAG
1 AAAAACAGAAATTGAAAATACCTCAGCTGTGGCC-TGAGGCTCAACTCACCTCTTGCAATATGAG
83390374 TTGATTTTTGAAAAGCATAGATTGAA
65 TTGA--TTTGAAAAG-ATAGATTGAA
*
83390400 AAAAACATAAATTGAAAATACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTTGCAATATGA
1 AAAAACAGAAATTGAAAATACCTCAGC-TGTG-GCCTGAGGCTCAACTCACCTCTTGCAATATGA
83390464 GTTGATTT
64 GTTGATTT
83390472 TTGAAAAACA
Statistics
Matches: 138, Mismatches: 13, Indels: 18
0.82 0.08 0.11
Matches are distributed among these distances:
84 3 0.02
85 33 0.24
87 32 0.23
88 3 0.02
89 31 0.22
91 33 0.24
93 3 0.02
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (87 bp):
AAAAACAGAAATTGAAAATACCTCAGCTGTGGCCTGAGGCTCAACTCACCTCTTGCAATATGAGT
TGATTTGAAAAGATAGATTGAA
Found at i:83390417 original size:15 final size:16
Alignment explanation
Indices: 83390384--83390417 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
83390374 TTGATTTTTG
* *
83390384 AAAAGCATAGATTGAA
1 AAAAACATAAATTGAA
83390400 AAAAACATAAATTGAA
1 AAAAACATAAATTGAA
83390416 AA
1 AA
83390418 TACCTCAGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.65, C:0.06, G:0.12, T:0.18
Consensus pattern (16 bp):
AAAAACATAAATTGAA
Found at i:83390459 original size:91 final size:88
Alignment explanation
Indices: 83390224--83390478 Score: 324
Period size: 91 Copynumber: 2.9 Consensus size: 88
83390214 AACAGAAATT
* * *
83390224 AAAAACAGAATTTGAAAAGACCTCAGCGTGTGGCCTGAGACTCAACTCACCTCTTGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGC-TGTGGCCTGAGGCTCAACTCACCTCTTGCAATATGAG
*
83390289 TTGA--TTTGAAAAGTAGAATTAG
65 TTGATTTTTGAAAAGTAGAATTAA
* * * *
83390311 TAAAGCAGAAATTGAAAATACCTCAGC-GT-GCCTTGAGGCTCAACTCACCTCTCGCAATATAAG
1 AAAAACAGAAATTGAAAATACCTCAGCTGTGGCC-TGAGGCTCAACTCACCTCTTGCAATATGAG
83390374 TTGATTTTTGAAAAGCATAG-ATTGAA
65 TTGATTTTTGAAAAG--TAGAATT-AA
*
83390400 AAAAACATAAATTGAAAATACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTTGCAATATGA
1 AAAAACAGAAATTGAAAATACCTCAGC-TGTG-GCCTGAGGCTCAACTCACCTCTTGCAATATGA
83390464 GTTGATTTTTGAAAA
64 GTTGATTTTTGAAAA
83390479 ACAAAAATTA
Statistics
Matches: 145, Mismatches: 13, Indels: 16
0.83 0.07 0.09
Matches are distributed among these distances:
84 3 0.02
85 33 0.23
87 32 0.22
88 3 0.02
89 28 0.19
91 43 0.30
93 3 0.02
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.26
Consensus pattern (88 bp):
AAAAACAGAAATTGAAAATACCTCAGCTGTGGCCTGAGGCTCAACTCACCTCTTGCAATATGAGT
TGATTTTTGAAAAGTAGAATTAA
Found at i:83390761 original size:191 final size:192
Alignment explanation
Indices: 83390436--83390786 Score: 632
Period size: 191 Copynumber: 1.8 Consensus size: 192
83390426 CATGTGAGCC
*
83390436 GAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAAACAAAAATTAAAAGGCTTAACT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTAAAAGGCTTAACT
*
83390501 CACCTCTCACAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTC
66 CACCTCTCACAACATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTC
*
83390566 AACTCATTTCTCGCAATATGAGTTGATTTTTTTTTAAATTTAAAAATACCTCAACGTGTCTT
131 AACTCACTTCTCGCAATATGAGTTGATTTTTTTTTAAATTTAAAAATACCTCAACGTGTCTT
**
83390628 GAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTGAAAAACAAAAATTAAAAGGCTTAACT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTAAAAGGCTTAACT
* *
83390692 CACCTCTCGCAACATGAGTCAATTTAAAACATAAACTAAACATACCTCGGCGTGCCCCGAGGCTC
66 CACCTCTCACAACATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTC
83390757 AACTCACTTCTCGCAATATGAGTTGATTTT
131 AACTCACTTCTCGCAATATGAGTTGATTTT
83390787 CCTTGGAAAG
Statistics
Matches: 152, Mismatches: 7, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
191 122 0.80
192 30 0.20
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.30
Consensus pattern (192 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTAAAAGGCTTAACT
CACCTCTCACAACATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTC
AACTCACTTCTCGCAATATGAGTTGATTTTTTTTTAAATTTAAAAATACCTCAACGTGTCTT
Found at i:83391449 original size:388 final size:388
Alignment explanation
Indices: 83390750--83391492 Score: 1477
Period size: 388 Copynumber: 1.9 Consensus size: 388
83390740 GGCGTGCCCC
83390750 GAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTCCTTGGAAAGCATGAATATTAAACATCA
1 GAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTCCTTGGAAAGCATGAATATTAAACATCA
83390815 AAATACCAAAACCTGTCCTTTGGTAGAACTCGGGTATCTTTTCCTTTGATTCAGTGCGACTCTCA
66 AAATACCAAAACCTGTCCTTTGGTAGAACTCGGGTATCTTTTCCTTTGATTCAGTGCGACTCTCA
83390880 TTCAAGATTTCTTGCTTTACTGGATTACCTATATATGCCATGCATGATGTCATCATGATATGCAC
131 TTCAAGATTTCTTGCTTTACTGGATTACCTATATATGCCATGCATGATGTCATCATGATATGCAC
83390945 ATGTTTATCTTAAATGCCTTTATGCCTACATGATTATGCAGTGCTCCTTAAGCATATTGGTCGTA
196 ATGTTTATCTTAAATGCCTTTATGCCTACATGATTATGCAGTGCTCCTTAAGCATATTGGTCGTA
83391010 TGTCATTTTCGCCATGATTGTTGAGGATCGCGTTCATTGCTTTGATTCTCGACCTTCTCTTCAGG
261 TGTCATTTTCGCCATGATTGTTGAGGATCGCGTTCATTGCTTTGATTCTCGACCTTCTCTTCAGG
83391075 CCTCATACCTGTTTTCGAGCTTTACGAGTATTAAAAAAATTTAAAAATACCTCAACGTGTCTT
326 CCTCATACCTGTTTTCGAGCTTTACGAGTATTAAAAAAATTTAAAAATACCTCAACGTGTCTT
*
83391138 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTCCTTGGAAAGCATGAATATTAAACATCA
1 GAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTCCTTGGAAAGCATGAATATTAAACATCA
83391203 AAATACCAAAACCTGTCCTTTGGTAGAACTCGGGTATCTTTTCCTTTGATTCAGTGCGACTCTCA
66 AAATACCAAAACCTGTCCTTTGGTAGAACTCGGGTATCTTTTCCTTTGATTCAGTGCGACTCTCA
83391268 TTCAAGATTTCTTGCTTTACTGGATTACCTATATATGCCATGCATGATGTCATCATGATATGCAC
131 TTCAAGATTTCTTGCTTTACTGGATTACCTATATATGCCATGCATGATGTCATCATGATATGCAC
83391333 ATGTTTATCTTAAATGCCTTTATGCCTACATGATTATGCAGTGCTCCTTAAGCATATTGGTCGTA
196 ATGTTTATCTTAAATGCCTTTATGCCTACATGATTATGCAGTGCTCCTTAAGCATATTGGTCGTA
83391398 TGTCATTTTCGCCATGATTGTTGAGGATCGCGTTCATTGCTTTGATTCTCGACCTTCTCTTCAGG
261 TGTCATTTTCGCCATGATTGTTGAGGATCGCGTTCATTGCTTTGATTCTCGACCTTCTCTTCAGG
83391463 CCTCATACCTGTTTTCGAGCTTTACGAGTA
326 CCTCATACCTGTTTTCGAGCTTTACGAGTA
83391493 ATCGACGTTT
Statistics
Matches: 354, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
388 354 1.00
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.37
Consensus pattern (388 bp):
GAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTCCTTGGAAAGCATGAATATTAAACATCA
AAATACCAAAACCTGTCCTTTGGTAGAACTCGGGTATCTTTTCCTTTGATTCAGTGCGACTCTCA
TTCAAGATTTCTTGCTTTACTGGATTACCTATATATGCCATGCATGATGTCATCATGATATGCAC
ATGTTTATCTTAAATGCCTTTATGCCTACATGATTATGCAGTGCTCCTTAAGCATATTGGTCGTA
TGTCATTTTCGCCATGATTGTTGAGGATCGCGTTCATTGCTTTGATTCTCGACCTTCTCTTCAGG
CCTCATACCTGTTTTCGAGCTTTACGAGTATTAAAAAAATTTAAAAATACCTCAACGTGTCTT
Found at i:83402169 original size:3 final size:3
Alignment explanation
Indices: 83402161--83402480 Score: 640
Period size: 3 Copynumber: 106.7 Consensus size: 3
83402151 CAATAAAACT
83402161 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
83402209 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
83402257 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
83402305 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
83402353 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
83402401 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
83402449 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
83402481 AAATAATAAT
Statistics
Matches: 317, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 317 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
ATG
Found at i:83404450 original size:100 final size:100
Alignment explanation
Indices: 83404331--83413707 Score: 8427
Period size: 100 Copynumber: 93.8 Consensus size: 100
83404321 TGCACTGCCA
* * * * *
83404331 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATTTGTTCCACTGCACCGCCAAGGAAGTAAGATTCA
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * *
83404396 CCATTGTGGCTACAATCTTTTTAATTGCTATGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * * *
83404431 GGGAAGCCAGATTCACCGTTGTAGCTTCAATCTGCTCCACTACACCGCCAGGGAAGTAAGATTCA
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
*
83404496 CCGTTGTGGCTTCAATATTTTTAATTGCAATGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * ** * **
83404531 TGG-AGCAAGATTCACCGTTGTAGCTTCAATCTATTCCACTGCACTACCAGAGAAGTAATTTTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* *
83404595 CCATTGTGGCTTCAATCTTTTTAATTGCAATGTCA
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * * * * *
83404630 GGGAAACAAGATTCACCGTTGTAACTTCAATCTGTTCCACTTCACCACCAGAGAAGTAAGATTCA
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * *
83404695 TCGTTGTGGTTTCAATC--TTT-A-T--AATGTTG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * *
83404724 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGCTCCACTACACCGCCAGGGAAATAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
*
83404789 CCGTTGTGGCTTCAATATTTTTAATTGCAATGTC-
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * * *
83404823 GTGAAGCAAGATTCACCATTGTAGCTTCAATCTGTTCCACTGCACCGCCAAGGAAGTAAGATTCA
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* *
83404888 CAGTTGTGGCTTCAATC-TTTTAATTGTAATGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * * * * *
83404922 GGGAAGCCAGATTCATCGTTATAGCTTCAATATATTCCACTGCACCGCCAGGGAAGTAAGATTCA
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * *
83404987 CCATTGTGGCTTTAATCTTTTTAATTGCAATGTCT
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * * * *
83405022 GGGAAGCAAGATTCGCCGTTGTAGTTTCAATCTATTCCACTGCACCGCCAAGGAAGTAAGATTCA
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * *
83405087 CCATTGTGGCTTCAATCTTTTTAATTGTAATGTTG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * *
83405122 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGCTCCACTACACCGCCAGGGAAATAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
*
83405187 CCGTTGTGGCTTCAATATTTTTAATTGCAATGTC-
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * * * ** *
83405221 GTGAAGCAAGATTCACCATTGTAGCTTCAATCTGTTCCACTGCACTGCCAGAGAAGTAATTTTCA
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * *
83405286 CCATTGTGGCTTCAATATTTTTAATTGCAATGTCA
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * * *
83405321 GGGAAACAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGAGATGTAAGATTCA
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* *
83405386 TCGTTGTGGCTTCAATCTTTTTAATTACAATGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * * * * ** * * ** *** ** *
83405421 GGGGAGCCAGATTCACCGCTGTGGCTTCAATCTTTTTAATTACAATGTTGGGGAAACAAGATTCA
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * * ** * ** *
83405486 CCATTGTAGCTTCAATCTGTTCCACTGCACCG-CTA
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTC-G
* * * * ** * * ** * * ***
83405521 AGGAAGTAAGATTCACAGTTGTAGCTTCAATCTTTTTAATTGAAATGTCGGGGAAACCAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * * ** ** * * ** * *
83405586 CCGTTATAGCTTTAATCTGCTCCACTACACCGCCA
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* ** * ** * * ** * *
83405621 GGGAAGTAAGATTTGCCGTTGT-GTCTTCAATCTTTTTAATTACAATGTC-GTGG-AGCAAGATT
1 GGGAAGCAAGATTCACCGTTGTAG-CTTCAATCTGTTCCACTGCACCGCCAG-GGAAGTAAGATT
* * * ** * ** * *
83405683 TGCCATTGTAGG-TTCAATCTATTCCACTGCACCGCCA
64 CGCCGTTGT-GGCTTCAATCTTTTTAATTGCAATGTCG
* * * * * * * ** * * ** * ** *
83405720 GAGAAGTAAGATTCGCCCTTGTGGCTTCAATATTTTTAATTACAATGTCAGGGAAACAAGATTCA
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* ** ** * * ** * *
83405785 CCGTTGTAGCTTCAATCTGCTCCACTGTACCGCCA
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * * * * ** * ** * * * ** *
83405820 GGGAAGTAAGATTCGCAGTTGTGGCTTCAATCTTTTTAATTGCAAGGTCGGGGGAGCCAGATTCA
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * *** ** **** *
83405885 TCGTTGTAGCTTCAATCAGCTCCATTGCACCACCA
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * * * * ** * ** * **
83405920 GAGAAGTAAGATTCGCTGTTGTGGCTTCAATCAT-TTTAATTGCAATGTCAGGGAAACAAGATTC
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATC-TGTTCCACTGCACCGCCAGGGAAGTAAGATTC
* * * *** * ** * *
83405984 ACCGTTGTAGCTTCAATCTATACCACTGCACCGCCA
65 GCCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* *** * ** * * **
83406020 GGGAAGTAAGATTCGTTGTTGTGGCTTCAATCT-TTTTAAT-TA----C----AA-T---ATTTA
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* ** * **
83406071 CCGTTGTAGCTTCAATCTTTTTAATTAAAATATTTA
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAAT-GTCG
* * * * * * ** *
83406107 GGG-TGCAAGATTCGCTGTTGTACCTTCAATTTGTTCCACTACACTACCAGGGAAGTAAGATTCA
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* *
83406171 CCATTGTGGCTTCAATCTTTTTAATTGTAATGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
** * * * *
83406206 GGGAAATAAGATTCACCGTTGTAGCTTCAATCTGCTCCACTACACCACTAGGGAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
** *
83406271 CCGTTGTAACTTTAATCTTTTTAATTGCAATGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* ** * * * *
83406306 TGG-AGCAAGATTCATTGTTGTAGCTTCAATCTATTCCACTACACCGCCAGAGAAGTAAGATTCT
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
** **
83406370 CTATTGTGGCTTCAATCTTTTTAATTGCAATGTTA
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
** * * * * *
83406405 GGGAAATAAGATTCACCGTTGTAGCTTCAATTTGTTCCACTTCATCGCCAGGGAAGTACGATTTG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* *
83406470 CTGTTGTGGCTTCAAACTTTTTAATTGCAATGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * * * *
83406505 GGGGAGCTAGATTCACCGTTGTAGCTTCAATCTGCTCCATTGGACCGCCAGGGAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
*
83406570 CTGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * * * *
83406605 GGGAAACACGATTCACCATTGTAGCTTCAATCTGTTCTACTGCACCGCCAGCGAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* *
83406670 CTGTTGTGGCTTCAATCTTTTTAATTACAATGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * * * * * * *
83406705 GGGAACCAAGATTCACCATTATAACTTCAATCTGCTCCACTGTACCGACAGGGAAGTAAGATTTG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * *
83406770 CCGTTGTGGCTTCAATTTTTTTAATTGCAATATTG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * * * * * * *
83406805 TGG-AGCAAGATTCGCTGTTGTAGCTTCAATTTGTGCCACTACACTGCCAGGGAAGTAAGATTCA
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
*
83406869 CCATTGTGGCCTT-AATCTTTTTAATTGCAATGTCG
66 CCGTTGTGG-CTTCAATCTTTTTAATTGCAATGTCG
* * * *
83406904 GGGAAACAAGATTCACCATTGTAGCTTCAACCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCA
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
83406969 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * ** * * ** ** **
83407004 GGGGAGCCAGATTCGTCGTCGTAGATTCAATCTACTCCACTGCATTGGTAGGGAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* *
83407069 CCATTGTGGCTTCAATCTTTTTAATTGCAGTGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
** * * * * * * *
83407104 GGGAAATAAGATTCACCGTTGTCGCTTGAATCTATTCCACTGCGCCGCTAGGGAACTAAGATTCT
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * * **
83407169 CCATTGTAGCTTCAATCTTTTTAATTACAATGTTT
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * * *
83407204 TGGATA-CAAGATTCGCCGTTGTAGCTTCAATTTGTTCCACTGCACCGCTAGGGAAGTAAGATTC
1 GGGA-AGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTC
* * * *
83407268 GCCATTGTGGCTTTAATATTTTTAATTGCAATGTCC
65 GCCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* ** ** * *
83407304 GAGAAATAAGATTCATTGTTGTAGCTTCAATCTGCTCCACTACACCGCCAGGGAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * * *
83407369 TCATTGTGGCTTCAATATTTTTAACTGCAATGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * * ** * *
83407404 TGG-AGTAAGATTCGCTATTGTAGCTTCAATCTATTCCACTGCACCGCCAGAGAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
** * * * **
83407468 CAATTATGGCTTCGATCTTTTTAATTGGAATGTTA
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* ** *
83407503 GAGAAATAAGATTCACCGTTGTAGTTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * *
83407568 CTGTTGTGGCTGCAAACTTTTTAATTGCAATGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * ** * *
83407603 GGGGAGCCAGATTCACTATTGTAGCTTCAATCTGCTCCATTGCACCGCCAGGGAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
*
83407668 CTGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * * * * * *
83407703 GGGAAACATGATTCACCGTTGTTGCTTCAATTTGTTTCACTGTACCGCCAGGGAAGTAAGATTCA
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* *
83407768 CCATTGTGGCTTCAATCTTTTTAATTGCAATGTCT
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
** ** * * * *
83407803 GGGAAATAAGATTCACTATTGTAGCTTGAATCTGTTCCACTGCGCCGCTAGGGAAGTAAGATTCA
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * * **
83407868 CCGTTGTAGCTTCAATCTTTTGAATTACAATGTTTA
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATG-TCG
* * * *
83407904 GGG-TGCAAGATTCACCGTTGTAGCTTCAATTTGTTCCACTACATTC-CCAGGGAAGTAAGATTC
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCA-CCGCCAGGGAAGTAAGATTC
* * *
83407967 ACCATTGTGGCTTCAATCTTTTTAATTGTAATGTCG
65 GCCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* ** ** * * *
83408003 AGGAAATAAGATTCACCGTTGTAGCTTCAATCTACTCCACTACACCACTAGGGAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* *
83408068 CCGTTGTGACTTTAATCTTTTTAATTGCAATGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* *** * * * * *
83408103 TGG-AGCAAGATTCGTTGTTGTAGCTTCAATCTATTCCACTGCACTGCCAGAGCAGGAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* **
83408167 CCATTGTGGCTTCAATCTTTTTAATTGCAATGTTA
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
** * * * *
83408202 GGGAAATAAGATTCACCGTTGTAGCTTCAATTTGTTCCACTGCATCGCCAGAGAAGTAAGATTCA
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* *
83408267 CCGTTGTGGCATCAAACTTTTTAATTGCAATGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * * * * *
83408302 GGGGAGCCAGATTCACTGTTGTAGCTTCAATCTGCTCCATTGCACCGCTAGGGAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
*
83408367 CTGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* ** * * *
83408402 GGGAAACTTGATTCCCCGTTGTAGCTTCAATCTGTTCTACTGCACTGCCAGGGAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
** *
83408467 CTATTGTGGCTTCAATCTTTTTAATTACAATGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * * * * * *
83408502 GGGAAGCAAGATTCACCATTATAACTTCAATCTGCTCCACTGTACCGACAGGGAAGTAAGATTTG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * *
83408567 CCGTTGTGGCTTTAATCTTTTTAATTGCAATATTG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * * * * * **
83408602 TGG-AGCAAGATTCGCTGTTGTAGCTTCAATTTGTGCCACTGTATTGCCAGGGAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * *
83408666 CCATTATGGCCTT-AATCTTTTTAATTG-ATTGT-G
66 CCGTTGTGG-CTTCAATCTTTTTAATTGCAATGTCG
*** * ** * ** *** ** * * * * * *
83408699 GCCTTAGTCTTTTTA-ATTGCAATGTCGGGGAAACAAGAT-TCACCATTGTAGCTTCAACCTGTT
1 G-GGAAG-C----AAGATT-CACCGTTGTAGCTTCAATCTGT-TCCACTGCA-C--C-GCCAG-G
** * * ** * * ** * * *** *
83408762 CCACT--GCA-CCGCCAGGGAAGTAAGATTCGCTGTTGTGGCTTCAATCTTTTTAATTGCAATGT
53 GAAGTAAG-ATTCGCC---GTTGT-GGCTTCAATCTTTTTAATT---GC-----AA-T-----GT
83408824 CG
99 CG
* * ** * * ** ** **
83408826 AGGGAGTCAGATTCGCCGTTGTAGATTCAATCTACTCCACTGCATTGGTAGGGAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
*
83408891 CCATTGTGGCTTCAATCTTTTTAATTGCAATGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * ** ** **
83408926 AGGG-AGTC-AGATTCGCCGTTGTAGATTCAATCTACTCCACTGCATTGGTAGGGAAGTAAGATT
1 -GGGAAG-CAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATT
* *
83408989 CGCCATTGTGGCTTCAATCTTTTTAATTGCAGTGTCG
64 CGCCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* ** * * * * * *
83409026 GGAAAATAAGATTCACCGTTGTAGCTTGAATCTATTCCACTACGCCGCTAGGGAAGTAAGATTCT
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * * **
83409091 CCATTGTAGCTTCAATCTTTTTAATTACAATGTTT
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * * * *
83409126 TGGATGCAAGATTCGCCGTTGTAGCTTCAATTTGTTCCACTGCACCGCTAGGGAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * * *
83409191 CCATTGTGGCTTTAATCTTTTTAATTGCAATATCC
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * * * *
83409226 GAGAAACAAGATTCATCGTTGTAGCTTCAATCTGCTCCACTACACCGCCAGGGAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* *
83409291 TCGTTGTGGCTTCAATCTTTTTAACTGCAATGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * *** * * *
83409326 TGG-AGTAAGATTCGTTGTTGTAGCTTCAATCTATTCCACTGCACCGCCAGAGAAGTAAGTTTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
** * * **
83409390 CTATTGTGGCTTCGATCTTTTTAATTGGAATGTTA
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* ** * *
83409425 GAGAAATAAGATT-ACCGTTGTAGTTTCAATCTGTTCCACTGCACCGTCAGGGAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * *
83409489 CTGTTGTGGCTGCAAACTTTTTAATTGCAATGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* ** * * * *
83409524 GGGAAACTTGATTCACCGTTGTTGCTTCAATTTGTTTCACTGTACCGCCAGGGAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
*
83409589 CTGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* ** * * * * *
83409624 GGGAAACTTGATTCACCGTTGTTGCTTCAATTTGTTTCACTGTACCGCCAGGGAAGTAAGACTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* *
83409689 CCATTGTGGCTTCAATCTTTTTAATTGCAATGTCA
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * * * * *
83409724 GGGAAACAAGGTTTATCGTTGTAGCTTCAACCTGTTCCACTGCACTGCCAGGGAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * **
83409789 CCGTTCTAGCTTCAATCTTTTTAATTATAATGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * * * * * * **
83409824 GGGGAGCCAGATTCGCCGTTGTAGCTTTAATTTGCTCCACTGCACCGCTAGAAAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* *
83409889 CCGTTGTGGCTTCAATATTTTTAATTGCAATGTCT
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
** ** * * * * *
83409924 GGGAAATAAGATTCACTATTGTAGCTTGAATCTGTTCCAGTGCGCCACCAGGGAAGTAAGATTCA
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * **
83409989 CCGTTGT-ACTTCAAT-TTTTTGAATTACAATGTTTA
66 CCGTTGTGGCTTCAATCTTTTT-AATTGCAATG-TCG
* * * * * *
83410024 GGG-TGCAAGATTCGCCGTTGTAGCTTCAATTTGTTCCATTACACTC-CAAGGGAAGTAAGATTC
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCAC-CGCCAGGGAAGTAAGATTC
* * *
83410087 ACCATTGTGGCTTCAATCTTTTTAATTGTAATGTCG
65 GCCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* ** * * * *
83410123 AGGAAATAAGATTCACCGTTGTAGCTTCAATCTGCTCCACTACACCACTAGGGAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* *
83410188 CCGTTGTGACTTTAATCTTTTTAATTGCAATGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* *** * * * * *
83410223 TGG-AGCAAGATTCGTTGTTGTAGCTTCAATCTATTCCACTGCACTGCCAGAGCAGGAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * **
83410287 CCATTGTGGCTTCAATCTTTTTAATTGCAATTTTA
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
** * * *
83410322 GGGAAATAAGATTCACCGTTGTAGCTTCAATTTGTTCCACTGCATCGCCAGAGAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * *
83410387 TCGTTGTGGCATCAAACTTTTTAATTGCAATGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * * * * *
83410422 GGGGAGCCAGATTCACCGTTGTAGCTTCAATCTGCTCCATTGCACCACTAGGGAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
*
83410487 CTGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* ** * * * ** ** **
83410522 GGGGAGCCTGATTCGCTGTTGTAGATTCAATCTACTCCACTGCATTGGTAGGGAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
** *
83410587 CTATTGTGGCTTCAATCTTTTTAATTGCAGTGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* *** * * * * *
83410622 GAGAAATTAGATTCACCGTTGTAGCTTGAATCTATTCCACTGCTCCGCTAGGGAAGTAAGATTCT
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * * **
83410687 CCATTGTAGCTTCAATCTTTTTAATTACAATGTTT
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * * * *
83410722 TGGATGCAAGATTCACCTTTGTAGCTTCAATTTGTTCCACTGCACCGCTAGGGAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * * * *
83410787 CCATTGTGACTTTAATATTTTTAATTGCAATGTCC
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * * * * * *
83410822 GAGAAACAGGATTCATCGTTGTAGCTTCAATCTGCTCCCCTACACCGCCAGGGAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * *
83410887 TCGTTGTGGCTTCAATCTTTTTAACTACAATGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * * * * * *
83410922 TGG-AGTAAGATTCGCTGTTGTAGCTTCAATCTATTCCACTGTACCGCCAGAGAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
** * **
83410986 CTATTGTGGCTTCAATCTTTTTAATTGGAATGTTA
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* ** * * **
83411021 GAGAAATAAGATTCACCGTTGTAGTTTCAATCTGTTTCACTGCACCATCAGGGAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * *
83411086 CTGTTGTGGCTGCAAACTTTTTAATTGCAATGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * ** * *
83411121 GGGGAGCTAGATTCAATGTTGTAGCTTCAATCTGCTCCATTGCACCGCCAGGGAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
**
83411186 CTATTGTGGCTTCAATCTTTTTAATTGCAATGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* ** * * * *
83411221 GGGAAACTTGATTCACCGTTGTTG-TTGCAATTTGTTTCACTGTACCGCCAGGGAAGTAAGATTC
1 GGGAAGCAAGATTCACCGTTGTAGCTT-CAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTC
* * *
83411285 ACCATTGTGGCTTCAATCTTTTTAATTGCAATGTCA
65 GCCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * * * *
83411321 GGGAAACAAGGTTTATCGTTGTAGCTTCAACCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* ** *
83411386 CCATTGTGGCTTCAATCTTTTTAATTATAATGTAAG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGT-CG
* * * * * * ** *
83411422 GGG-AGCCAGGTTCGCCGTTGTAGCTTCAATTTGCTCCACTGCACCGCTAGAAAAGTAAGATTCA
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * *
83411486 CCGTTGTGGCTTCAATATTTTTAATTGAAATGTCT
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
** ** * * * *
83411521 GGGAAATAAGATTCACTATTGTAGCTTGAATCTGTTCCACTGCGCCACCAGGGAAGTAAGATTCA
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * * **
83411586 CCGTTGT-ACTTCAATCTTTTAAATTACAATGTTTA
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATG-TCG
* * * * * *
83411621 GGG-TGCAAGATTCGCCGTTGTAGCTTCAATTTGTTCCATTACACTC-CAAGGGAAGTAAGATTC
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCAC-CGCCAGGGAAGTAAGATTC
* * *
83411684 ACCATTGTGGCTTCAATCTTTTTAATTGTAATGTCG
65 GCCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
** * * * *
83411720 GGGAAATAAGATTCACCGTTGTAGCTTCAATCTGCTCCACTACACCACTAGGGAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* *
83411785 CCGTTGTGACTTTAATCTTTTTAATTGCAATGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* *** * * * * *
83411820 TGG-AGCAAGATTCGTTGTTGTAGCTTCAATCTATTCCACTGCACTGCCAGAGCAGGAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* **
83411884 CCATTGTGGCTTCAATCTTTTTAATTGCAATGTTA
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
** * ** * *
83411919 GGGAAATAAGATTCACCGTTGTAGCTTCAATTTGTTCCACTGCATTGTCAGAGAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* *
83411984 CCGTTGTGGCATCAAACTTTTTAATTGCAATGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * * * * *
83412019 GGGGAGCCAGATTCACCGTTGTAGCTTCAATCTGCTCCATTGCACCGCTAGGGAAGTAAGATTTG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
*
83412084 CTGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * * * * *
83412119 GGGAAACATGATTCCCCGTTGTGGCTTCAATCTGTTCTACTGCACCGCGAGGGAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* *
83412184 CTGTTGTGGCTTCAATCTTTTTAATTACAATGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * * * * ** *
83412219 GGGAAGCAAGATTCACCATTATAGCTTCAATCTGCTCCACTGTACCGACAGAAAAGTAAGATTTG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * *
83412284 CCATTGTGGCTTCAATCTTTTTAATTGCAATATTG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * * * * * *
83412319 TGG-AGTAAGATTCGCTGTTGTAGCTTCAATTTGTGCCACTGCACTGCCAGGGAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
*
83412383 CCATTGTGGCCTT-AATCTTTTTAATTGCAATGTCG
66 CCGTTGTGG-CTTCAATCTTTTTAATTGCAATGTCG
* * * * *
83412418 GGGAAACAAGATTCCCCATTGTAGCTTCAACCTGTTCCACTGCACCACCAGGGAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* *
83412483 CCGTTGAGGCTTCAATATTTTTAATTGCAATGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
** ** * * * ** ** **
83412518 GGGGGGCCTGATTCGCCATTGTAGATTCAATCTCCTCCACTGCATTGGTAGGGAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* **
83412583 CCATTGTGGCTTCAATCTTTTTAATTGCGGTGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
** * * * * * *
83412618 GGGAAATAAGATTCACCGTTGTAGCTTGAATCTATTCCACTGCTCCTCTAGGGAAGTAAGATTCT
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * * * **
83412683 CCATTGTAGCTTCAATCTTTTTATTTACAATGTTT
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * * * *
83412718 TGGATGCAAGATTCGCCGTTGTAGCTTCAATTTGTTCCACTGCACCGCTAGGGAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * *
83412783 CCATTGTGGCTTTAATCTTTTTAATTGCAATGTCC
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * * * * * * *
83412818 GAGAAACAAGATTCATCGTTGTGGCTTCAATCTGCTCCCCTACACTGCCAGGGAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * *
83412883 TCGTTGTGGCTTCAATCTTTTTAACTACAATGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * * * * * *
83412918 TGG-AGTAAGATTCGCTGTTGTAGCTTCAATCTATTCCACTGTACCGCCAGAGAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
**
83412982 CTATTGTGGCTTCAATCTTTTTAATTGCAATGTTAGGCAATGTCG
66 CCGTTGTGGCTTCAATC--TTT--TT--AA--TT--GCAATGTCG
* * ** * * * *
83413027 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTGCTCCACTATAGCGACAGGGAAGTAAGGTTCA
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* *
83413092 CCGTTGTGGCTTCAATCTTTTTATTTGCAATGTTG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * ** * * *
83413127 TGG-AGCAAGATTCGCTATTGTAGCTTCAATTTGTTCCACGGCACCGCCAGGGAAGTAAGATTTG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
*
83413191 CCATTGTGGCTTCAATCTTTTTAATTGCAATGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * *
83413226 GGGAAACAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGTACCGCCAGGGAAGTAGGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
*
83413291 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGT-T
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * * * * *
83413325 GGGAGAGCCAGATTCGCCGTTGTAGCTTCAATCTGCTCCACTGCACCACTAGGGAAGTATGATTC
1 GGGA-AGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTC
*
83413390 GCTGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
65 GCCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
** ** * ** *
83413426 GGGAAATAAGATTCACCGTTGT-GCTTGTATCTGTTTCACTGTGCCGCCAGGGAAGTAAGATTCA
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
** * **
83413490 CCGTTGTACCTTCAATCTTTTTAATTACAATGTTT
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
** * * * * *
83413525 GGGAAGCAAGATTTGCCATTGTAGCTTCAATCTGGTCCACTGTACCGCAAGGAAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
**
83413590 CCGTTGTGATTTCAATCTTTTTAATTGCAATGTCG
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
* * * * * * * *
83413625 AGGAAGTAAGATTCGCTGTTGTAGCTTCAATATGTTCCACTACACTGTCAGGGAAGTAAGATTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* *
83413690 CCATTGTAGCTTCAATCT
66 CCGTTGTGGCTTCAATCT
83413708 ATTCCACTAT
Statistics
Matches: 7581, Mismatches: 1563, Indels: 266
0.81 0.17 0.03
Matches are distributed among these distances:
86 49 0.01
87 8 0.00
88 1 0.00
90 2 0.00
92 1 0.00
94 77 0.01
96 6 0.00
97 4 0.00
98 28 0.00
99 1665 0.22
100 5531 0.73
101 27 0.00
102 2 0.00
103 6 0.00
104 19 0.00
105 3 0.00
106 4 0.00
107 6 0.00
108 7 0.00
109 12 0.00
110 67 0.01
111 8 0.00
114 10 0.00
115 2 0.00
116 2 0.00
117 2 0.00
118 5 0.00
120 1 0.00
121 18 0.00
122 3 0.00
126 4 0.00
127 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.33
Consensus pattern (100 bp):
GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
CCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
Found at i:83405403 original size:50 final size:50
Alignment explanation
Indices: 83404269--83406052 Score: 927
Period size: 50 Copynumber: 35.9 Consensus size: 50
83404259 AATCTAATTA
* * * * * *
83404269 ACTGCAATGTCAGGCAAGTAAGATTCATCGTTATAGCTTCAATTTGTTCC
1 ACTGCACTGCCAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* *
83404319 ACTGCACTGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATTTGTTCC
1 ACTGCACTGCCAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* * * * * * **
83404369 ACTGCACCGCCAAGGAAGTAAGATTCACCATTGTGGCTACAATCTTTTTA
1 ACTGCACTGCCAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* * * ** *
83404419 ATTGCTA-TGTCGGGGAAGCCAGATTCACCGTTGTAGCTTCAATCTGCTCC
1 ACTGC-ACTGCCAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* * * * * **
83404469 ACTACACCGCCAGGGAAGTAAGATTCACCGTTGTGGCTTCAATATTTTTA
1 ACTGCACTGCCAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* * * * *
83404519 ATTGCAATGTC-GTGG-AGCAAGATTCACCGTTGTAGCTTCAATCTATTCC
1 ACTGCACTGCCAG-GGAAGTAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* * ** * * * * **
83404568 ACTGCACTACCAGAGAAGTAATTTTCGCCATTGTGGCTTCAATCTTTTTA
1 ACTGCACTGCCAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* * * ** *
83404618 ATTGCAATGTCAGGGAAACAAGATTCACCGTTGTAACTTCAATCTGTTCC
1 ACTGCACTGCCAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* ** * * * *
83404668 ACTTCACCACCAGAGAAGTAAGATTCATCGTTGTGGTTTCAATCT-TT--
1 ACTGCACTGCCAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* *** * *
83404715 A-T--AATGTTGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGCTCC
1 ACTGCACTGCCAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* * * * * * * **
83404762 ACTACACCGCCAGGGAAATAAGATTCGCCGTTGTGGCTTCAATATTTTTA
1 ACTGCACTGCCAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* * * * * *
83404812 ATTGCAATGTC-GTGAAGCAAGATTCACCATTGTAGCTTCAATCTGTTCC
1 ACTGCACTGCCAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* * * * **
83404861 ACTGCACCGCCAAGGAAGTAAGATTCACAGTTGTGGCTTCAATCT-TTTA
1 ACTGCACTGCCAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* * * * * ** * * * *
83404910 ATTGTAATGTCGGGGAAGCCAGATTCATCGTTATAGCTTCAATATATTCC
1 ACTGCACTGCCAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* * * * * **
83404960 ACTGCACCGCCAGGGAAGTAAGATTCACCATTGTGGCTTTAATCTTTTTA
1 ACTGCACTGCCAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* * * * * * * *
83405010 ATTGCAATGTCTGGGAAGCAAGATTCGCCGTTGTAGTTTCAATCTATTCC
1 ACTGCACTGCCAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* * * * * **
83405060 ACTGCACCGCCAAGGAAGTAAGATTCACCATTGTGGCTTCAATCTTTTTA
1 ACTGCACTGCCAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* * * *** * *
83405110 ATTGTAATGTTGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGCTCC
1 ACTGCACTGCCAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* * * * * * * **
83405160 ACTACACCGCCAGGGAAATAAGATTCGCCGTTGTGGCTTCAATATTTTTA
1 ACTGCACTGCCAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* * * * * *
83405210 ATTGCAATGTC-GTGAAGCAAGATTCACCATTGTAGCTTCAATCTGTTCC
1 ACTGCACTGCCAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* ** * * * * **
83405259 ACTGCACTGCCAGAGAAGTAATTTTCACCATTGTGGCTTCAATATTTTTA
1 ACTGCACTGCCAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* * * **
83405309 ATTGCAATGTCAGGGAAACAAGATTCACCGTTGTAGCTTCAATCTGTTCC
1 ACTGCACTGCCAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* * * * * * **
83405359 ACTGCACCGCCAGAGATGTAAGATTCATCGTTGTGGCTTCAATCTTTTTA
1 ACTGCACTGCCAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* * * * * * ** * * * **
83405409 ATTACAATGTCGGGGGAGCCAGATTCACCGCTGTGGCTTCAATCTTTTTA
1 ACTGCACTGCCAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* * * *** ** *
83405459 ATTACAATGTTGGGGAAACAAGATTCACCATTGTAGCTTCAATCTGTTCC
1 ACTGCACTGCCAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* * * * * **
83405509 ACTGCACCGCTAAGGAAGTAAGATTCACAGTTGTAGCTTCAATCTTTTTA
1 ACTGCACTGCCAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* * * * * *** * * * *
83405559 ATTGAAATGTCGGGGAAACCAGATTCGCCGTTATAGCTTTAATCTGCTCC
1 ACTGCACTGCCAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* * ** * **
83405609 ACTACACCGCCAGGGAAGTAAGATTTGCCGTTGT-GTCTTCAATCTTTTTA
1 ACTGCACTGCCAGGGAAGTAAGATTCACCGTTGTAG-CTTCAATCTGTTCC
* * * * * ** * * *
83405659 ATTACAATGTC-GTGG-AGCAAGATTTGCCATTGTAGGTTCAATCTATTCC
1 ACTGCACTGCCAG-GGAAGTAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* * * * * * * **
83405708 ACTGCACCGCCAGAGAAGTAAGATTCGCCCTTGTGGCTTCAATATTTTTA
1 ACTGCACTGCCAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* * * * ** *
83405758 ATTACAATGTCAGGGAAACAAGATTCACCGTTGTAGCTTCAATCTGCTCC
1 ACTGCACTGCCAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* * * * * * **
83405808 ACTGTACCGCCAGGGAAGTAAGATTCGCAGTTGTGGCTTCAATCTTTTTA
1 ACTGCACTGCCAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* ** * * * ** * * *
83405858 ATTGCAAGGTCGGGGGAGCCAGATTCATCGTTGTAGCTTCAATCAGCTCC
1 ACTGCACTGCCAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* ** * * * * **
83405908 ATTGCACCACCAGAGAAGTAAGATTCGCTGTTGTGGCTTCAATCAT-TTTA
1 ACTGCACTGCCAGGGAAGTAAGATTCACCGTTGTAGCTTCAATC-TGTTCC
* * * ** * *
83405958 ATTGCAATGTCAGGGAAACAAGATTCACCGTTGTAGCTTCAATCTATACC
1 ACTGCACTGCCAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* *** *
83406008 ACTGCACCGCCAGGGAAGTAAGATTCGTTGTTGTGGCTTCAATCT
1 ACTGCACTGCCAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCT
83406053 TTTTAATTAC
Statistics
Matches: 1229, Mismatches: 484, Indels: 42
0.70 0.28 0.02
Matches are distributed among these distances:
44 29 0.02
45 1 0.00
46 1 0.00
47 2 0.00
48 1 0.00
49 180 0.15
50 1014 0.83
51 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.31
Consensus pattern (50 bp):
ACTGCACTGCCAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGTTCC
Found at i:83405933 original size:449 final size:444
Alignment explanation
Indices: 83404338--83406435 Score: 1486
Period size: 449 Copynumber: 4.7 Consensus size: 444
83404328 CCAGGGAAGT
* * *
83404338 AAGATTCGCCGTTGTAGCTTCAATTTGTTCCACTGCACCGCCA-AGGAAGTAAGATTCACCATTG
1 AAGATTCGCCATTGTAGCTTCAATCTGTTCCACTGCACTGCCAGA-GAAGTAAGATTCACCATTG
* * * * * *
83404402 TGGCTACAATCTTTTTAATTGCTATGTCGGGGAAGCCAGATTCACCGTTGTAGCTTCAATCTGCT
65 TGGCTTCAATATTTTTAATTGCAATGTCAGGGAAACAAGATTCACCGTTGTAGCTTCAATCTGCT
* * *
83404467 CCACTACACCGCCAGGGAAGTAAGATTCACCGTTGTGGCTTCAATATTTTTAATTGCAATGTC-G
130 CCACTGCACCGCCAGGGAAGTAAGATTC-GCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCGG
* * * * * ** * **
83404531 TGGAGCAAGATTCACCGTTGTAGCTTCAATCTATTCCACTGCACTACCAGAGAAGTAATTTTCGC
194 GGGAGCCAGATTCATCGTTGTAGCTTCAATC-ATTCCATTACACCGCCAGAGAAGCAAGATTCGC
* * * * * * * *
83404596 CATTGTGGCTTCAATCTTTTTAATTGCAATG-TCAGGGAAACAAGATTCACCGTTGTAACTTCAA
258 CATTGTAGCTTCAATC-TTTCAACTGCAACGCT-AAGGAAATAAGATTCACAGTTGTAGCTTCAA
** * * * * * * * ** * * *
83404660 TCTGTTCCACTTCACCA--CCAGAGAAGTAAGATTCATCGTTGTGGTTTCAATCT--T-TA-TA-
321 TCT-TTTTAATTGA-AATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGCTCCACTAC
* *** * ** ** ** * ** * **
83404718 A-TGTTGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGCTCCACTACACCGCCAG-GGAAAT
384 ACCGCCAGGGAA-TAAGATTTGCCGTTGT-GCTTCAATCTTTTTAATTACAATGTC-GTGG-AGC
* * * * ** * * * * *
83404781 AAGATTCGCCGTTGTGGCTTCAATATTTTTAATTGCAATGTC-GTGAAGCAAGATTCACCATTGT
1 AAGATTCGCCATTGTAGCTTCAATCTGTTCCACTGCACTGCCAGAGAAGTAAGATTCACCATTGT
* * * ** * ** * * ** * * * *
83404845 AGCTTCAATCTGTTCCACTGCACCGCCAAGGAAGTAAGATTCACAGTTGTGGCTTCAATCT-TTT
66 GGCTTCAATATTTTTAATTGCAATGTCAGGGAAACAAGATTCACCGTTGTAGCTTCAATCTGCTC
* * * ** * * ** * * * * * ** * ** * *
83404909 AATTGTAATGTCGGGGAAGCCAGATTCATCGTTATAGCTTCAATATATTCCACTGCACCGCCAGG
131 CACTGCACCGCCAGGGAAGTAAGATTC-GCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCGGG
* ** * * * * * ** * ** * * *
83404974 GAAGTAAGATTCACCATTGTGGCTTTAATCTTTTTAATTGCAATGTCTGGGAAGCAAGATTCGCC
195 GGAGCCAGATTCATCGTTGTAGCTTCAATC-ATTCCATTACACCGCCAGAGAAGCAAGATTCGCC
* * * * * * *
83405039 GTTGTAGTTTCAATCTATTCCACTGCACCGCCAAGGAAGTAAGATTCACCA-TTGTGGCTTCAAT
259 ATTGTAGCTTCAATCT-TTCAACTGCAACGCTAAGGAAATAAGATTCA-CAGTTGTAGCTTCAAT
* * *
83405103 CTTTTTAATTGTAATGTTGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGCTCCACTACACC
322 CTTTTTAATTGAAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGCTCCACTACACC
* * * *
83405168 GCCAGGGAAATAAGATTCGCCGTTGTGGCTTCAATATTTTTAATTGCAATGTCGTGAAGC
387 GCCAGGG-AATAAGATTTGCCGTTGT-GCTTCAATCTTTTTAATTACAATGTCGTGGAGC
* **
83405228 AAGATTCACCATTGTAGCTTCAATCTGTTCCACTGCACTGCCAGAGAAGTAATTTTCACCATTGT
1 AAGATTCGCCATTGTAGCTTCAATCTGTTCCACTGCACTGCCAGAGAAGTAAGATTCACCATTGT
*
83405293 GGCTTCAATATTTTTAATTGCAATGTCAGGGAAACAAGATTCACCGTTGTAGCTTCAATCTGTTC
66 GGCTTCAATATTTTTAATTGCAATGTCAGGGAAACAAGATTCACCGTTGTAGCTTCAATCTGCTC
* * * *
83405358 CACTGCACCGCCAGAGATGTAAGATTCATCGTTGTGGCTTCAATCTTTTTAATTACAATGTCGGG
131 CACTGCACCGCCAGGGAAGTAAGATTC-GCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCGGG
* * * * ** ** *** * * *
83405423 GGAGCCAGATTCACCGCTGTGGCTTCAATCTTTTTAATTACAATGTTGGGGAAACAAGATTCACC
195 GGAGCCAGATTCATCGTTGTAGCTTCAATC-ATTCCATTACACCGCCAGAGAAGCAAGATTCGCC
* * *
83405488 ATTGTAGCTTCAATCTGTTCCACTGCACCGCTAAGGAAGTAAGATTCACAGTTGTAGCTTCAATC
259 ATTGTAGCTTCAATCT-TTCAACTGCAACGCTAAGGAAATAAGATTCACAGTTGTAGCTTCAATC
* * * *
83405553 TTTTTAATTGAAATGTCGGGGAAACCAGATTCGCCGTTATAGCTTTAATCTGCTCCACTACACCG
323 TTTTTAATTGAAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGCTCCACTACACCG
83405618 CCAGGGAAGTAAGATTTGCCGTTGTGTCTTCAATCTTTTTAATTACAATGTCGTGGAGC
388 CCAGGGAA-TAAGATTTGCCGTTGTG-CTTCAATCTTTTTAATTACAATGTCGTGGAGC
* * * * * *
83405677 AAGATTTGCCATTGTAGGTTCAATCTATTCCACTGCACCGCCAGAGAAGTAAGATTCGCCCTTGT
1 AAGATTCGCCATTGTAGCTTCAATCTGTTCCACTGCACTGCCAGAGAAGTAAGATTCACCATTGT
*
83405742 GGCTTCAATATTTTTAATTACAATGTCAGGGAAACAAGATTCACCGTTGTAGCTTCAATCTGCTC
66 GGCTTCAATATTTTTAATTGCAATGTCAGGGAAACAAGATTCACCGTTGTAGCTTCAATCTGCTC
* *
83405807 CACTGTACCGCCAGGGAAGTAAGATTCGCAGTTGTGGCTTCAATCTTTTTAATTGCAAGGTCGGG
131 CACTGCACCGCCAGGGAAGTAAGATTCGC-GTTGTGGCTTCAATCTTTTTAATTGCAATGTCGGG
* * * * *
83405872 GGAGCCAGATTCATCGTTGTAGCTTCAATCAGCTCCATTGCACCACCAGAGAAGTAAGATTCGCT
195 GGAGCCAGATTCATCGTTGTAGCTTCAATCA-TTCCATTACACCGCCAGAGAAGCAAGATTCGCC
* * * * * * * *
83405937 GTTGTGGCTTCAATCATTTTAATTGCAATG-TCAGGGAAACAAGATTCACCGTTGTAGCTTCAAT
259 ATTGTAGCTTCAATC-TTTCAACTGCAACGCT-AAGGAAATAAGATTCACAGTTGTAGCTTCAAT
* *** * * ** * * * ** * **
83406001 CTATACCACTGCACCGCCAGGGAAGTAAGATTCGTTGTTGTGGCTTCAATCT--T--TTTA-A--
322 CTTTTTAATTGAAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGCTCCACTACACC
** * * * * * *
83406059 -TTA--CAAT---ATTTACCGTTGTAGCTTCAATCTTTTTAATTAAAATAT-TTAGGGTGC
387 GCCAGGGAATAAGATTTGCCGTTGT-GCTTCAATCTTTTTAATTACAATGTCGT--GGAGC
** * * * * *
83406113 AAGATTCGCTGTTGTACCTTCAATTTGTTCCACTACACTACCAGGGAAGTAAGATTCACCATTGT
1 AAGATTCGCCATTGTAGCTTCAATCTGTTCCACTGCACTGCCAGAGAAGTAAGATTCACCATTGT
* * * *
83406178 GGCTTCAATCTTTTTAATTGTAATGTCGGGGAAATAAGATTCACCGTTGTAGCTTCAATCTGCTC
66 GGCTTCAATATTTTTAATTGCAATGTCAGGGAAACAAGATTCACCGTTGTAGCTTCAATCTGCTC
* * * ** * *
83406243 CACTACACCACTAGGGAAGTAAGATTCGCCGTTGTAACTTTAATCTTTTTAATTGCAATGTC-GT
131 CACTGCACCGCCAGGGAAGTAAGATTCG-CGTTGTGGCTTCAATCTTTTTAATTGCAATGTCGGG
* * * * * *
83406307 GGAGCAAGATTCATTGTTGTAGCTTCAATCTATTCCACTACACCGCCAGAGAAGTAAGATTCTCT
195 GGAGCCAGATTCATCGTTGTAGCTTCAATC-ATTCCATTACACCGCCAGAGAAGCAAGATTCGCC
* * * * * * *
83406372 ATTGTGGCTTCAATCTTTTTAATTGCAATGTTAGGGAAATAAGATTCACCGTTGTAGCTTCAAT
259 ATTGTAGCTTCAATC-TTTCAACTGCAACGCTAAGGAAATAAGATTCACAGTTGTAGCTTCAAT
83406436 TTGTTCCACT
Statistics
Matches: 1317, Mismatches: 308, Indels: 68
0.78 0.18 0.04
Matches are distributed among these distances:
434 1 0.00
435 149 0.11
436 171 0.13
437 1 0.00
438 1 0.00
439 2 0.00
440 1 0.00
441 50 0.04
442 187 0.14
443 34 0.03
444 2 0.00
445 3 0.00
446 2 0.00
447 36 0.03
448 107 0.08
449 569 0.43
450 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (444 bp):
AAGATTCGCCATTGTAGCTTCAATCTGTTCCACTGCACTGCCAGAGAAGTAAGATTCACCATTGT
GGCTTCAATATTTTTAATTGCAATGTCAGGGAAACAAGATTCACCGTTGTAGCTTCAATCTGCTC
CACTGCACCGCCAGGGAAGTAAGATTCGCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCGGGG
GAGCCAGATTCATCGTTGTAGCTTCAATCATTCCATTACACCGCCAGAGAAGCAAGATTCGCCAT
TGTAGCTTCAATCTTTCAACTGCAACGCTAAGGAAATAAGATTCACAGTTGTAGCTTCAATCTTT
TTAATTGAAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGCTCCACTACACCGCCA
GGGAATAAGATTTGCCGTTGTGCTTCAATCTTTTTAATTACAATGTCGTGGAGC
Found at i:83406083 original size:36 final size:36
Alignment explanation
Indices: 83406037--83406106 Score: 122
Period size: 36 Copynumber: 1.9 Consensus size: 36
83406027 AAGATTCGTT
* *
83406037 GTTGTGGCTTCAATCTTTTTAATTACAATATTTACC
1 GTTGTAGCTTCAATCTTTTTAATTAAAATATTTACC
83406073 GTTGTAGCTTCAATCTTTTTAATTAAAATATTTA
1 GTTGTAGCTTCAATCTTTTTAATTAAAATATTTA
83406107 GGGTGCAAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.29, C:0.13, G:0.10, T:0.49
Consensus pattern (36 bp):
GTTGTAGCTTCAATCTTTTTAATTAAAATATTTACC
Found at i:83408530 original size:50 final size:50
Alignment explanation
Indices: 83406156--83408534 Score: 811
Period size: 50 Copynumber: 47.7 Consensus size: 50
83406146 TACACTACCA
* * *
83406156 GGGAAGTAAGATTCACCATTGTGGCTTCAATCTTTTTAATTGTAATGTCG
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGCAATGTCG
** * ** ** * * * *
83406206 GGGAAATAAGATTCACCGTTGTAGCTTCAATCTGCTCCACTACACCA-CT-A
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGCA--ATGTCG
* * * * *
83406256 GGGAAGTAAGATTCGCCGTTGTAACTTTAATCTTTTTAATTGCAATGTCG
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGCAATGTCG
* *** * ** * * ** * *
83406306 TGG-AGCAAGATTCATTGTTGTAGCTTCAATCTATTCCACTACACCGCCA
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGCAATGTCG
* * * * * **
83406355 GAGAAGTAAGATTCTCTATTGTGGCTTCAATCTTTTTAATTGCAATGTTA
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGCAATGTCG
** * * * * *
83406405 GGGAAATAAGATTCACCGTTGTAGCTTCAAT-TTGTTCCACTT-C-ATCGCCA
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTT-TT-TAATTGCAAT-GTCG
* * ** ** * *
83406455 GGGAAGTACGATTTGCTGTTGTGGCTTCAAACTTTTTAATTGCAATGTCG
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGCAATGTCG
* * * ** ** * ** * *
83406505 GGGGAGCTAGATTCACCGTTGTAGCTTCAATCTGCTCCATTGGACCGCCA
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGCAATGTCG
* * ** *
83406555 GGGAAGTAAGATTCGCTGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGCAATGTCG
* * * * ** * *
83406605 GGGAAACACGATTCACCATTGTAGCTTCAATCTGTTCT-ACTGCACCGCCA
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCT-TTTTAATTGCAATGTCG
* * * ** * *
83406655 GCGAAGTAAGATTCGCTGTTGTGGCTTCAATCTTTTTAATTACAATGTCG
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGCAATGTCG
* * * ** ** * * ** * *
83406705 GGGAACCAAGATTCACCATTATAACTTCAATCTGCTCCACTGTACCGACA
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGCAATGTCG
* ** * * * * *
83406755 GGGAAGTAAGATTTGCCGTTGTGGCTTCAATTTTTTTAATTGCAATATTG
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGCAATGTCG
* * ** *** * * * * *
83406805 TGG-AGCAAGATTCGCTGTTGTAGCTTCAAT-TTGTGCCACTACACTGCCA
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTT-TTTAATTGCAATGTCG
* *
83406854 GGGAAGTAAGATTCACCATTGTGGCCTT-AATCTTTTTAATTGCAATGTCG
1 GGGAAGCAAGATTCACCATTGTAG-CTTCAATCTTTTTAATTGCAATGTCG
* * * ** * ** * *
83406904 GGGAAACAAGATTCACCATTGTAGCTTCAACCTGTTCCACTGCACCGCCA
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGCAATGTCG
* * *
83406954 GGGAAGTAAGATTCACCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGCAATGTCG
* * ** * * * ** ** * * *
83407004 GGGGAGCCAGATTCGTCGTCGTAGATTCAATCTACTCCACTGCATTGGT-A
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGCAAT-GTCG
* * * *
83407054 GGGAAGTAAGATTCGCCATTGTGGCTTCAATCTTTTTAATTGCAGTGTCG
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGCAATGTCG
** * * * * ** * *** *
83407104 GGGAAATAAGATTCACCGTTGTCGCTTGAATCTATTCCACTGCGCCG-CTA
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGCAATGTC-G
* * **
83407154 GGGAA-CTAAGATTCTCCATTGTAGCTTCAATCTTTTTAATTACAATGTTT
1 GGGAAGC-AAGATTCACCATTGTAGCTTCAATCTTTTTAATTGCAATGTCG
* * * ** * ** *
83407204 TGGATA-CAAGATTCGCCGTTGTAGCTTCAAT-TTGTTCCACTGCACCG-CTA
1 GGGA-AGCAAGATTCACCATTGTAGCTTCAATCTT-TTTAATTGCAATGTC-G
* * * * * *
83407254 GGGAAGTAAGATTCGCCATTGTGGCTTTAATATTTTTAATTGCAATGTCC
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGCAATGTCG
* ** *** ** ** * * ** * *
83407304 GAGAAATAAGATTCATTGTTGTAGCTTCAATCTGCTCCACTACACCGCCA
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGCAATGTCG
* ** * * *
83407354 GGGAAGTAAGATTCGTCATTGTGGCTTCAATATTTTTAACTGCAATGTCG
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGCAATGTCG
* * * * * ** * ** * *
83407404 TGG-AGTAAGATTCGCTATTGTAGCTTCAATCTATTCCACTGCACCGCCA
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGCAATGTCG
* * * * * * * * **
83407453 GAGAAGTAAGATTCGCAATTATGGCTTCGATCTTTTTAATTGGAATGTTA
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGCAATGTCG
* ** * * * ** * ** * *
83407503 GAGAAATAAGATTCACCGTTGTAGTTTCAATCTGTTCCACTGCACCGCCA
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGCAATGTCG
* * ** * * *
83407553 GGGAAGTAAGATTCGCTGTTGTGGCTGCAAACTTTTTAATTGCAATGTCG
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGCAATGTCG
* * * ** ** ** * *
83407603 GGGGAGCCAGATTCACTATTGTAGCTTCAATCTGCTCCATTGCACCGCCA
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGCAATGTCG
* * ** *
83407653 GGGAAGTAAGATTCGCTGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGCAATGTCG
* * * * * * * ** * *
83407703 GGGAAACATGATTCACCGTTGTTGCTTCAAT-TTGTTTCACTGTACCGCCA
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTT-TTTAATTGCAATGTCG
* * *
83407753 GGGAAGTAAGATTCACCATTGTGGCTTCAATCTTTTTAATTGCAATGTCT
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGCAATGTCG
** * * * ** * *** *
83407803 GGGAAATAAGATTCACTATTGTAGCTTGAATCTGTTCCACTGCGCCG-CTA
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGCAATGTC-G
* * * * **
83407853 GGGAAGTAAGATTCACCGTTGTAGCTTCAATCTTTTGAATTACAATGTTTA
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGCAATG-TCG
* * ** * * * ** *
83407904 GGG-TGCAAGATTCACCGTTGTAGCTTCAAT-TTGTTCCACTACATTCCCA
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTT-TTTAATTGCAATGTCG
* * *
83407953 GGGAAGTAAGATTCACCATTGTGGCTTCAATCTTTTTAATTGTAATGTCG
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGCAATGTCG
* ** * ** ** * * * *
83408003 AGGAAATAAGATTCACCGTTGTAGCTTCAATCTACTCCACTACACCA-CT-A
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGCA--ATGTCG
* * * *
83408053 GGGAAGTAAGATTCGCCGTTGT-GACTTTAATCTTTTTAATTGCAATGTCG
1 GGGAAGCAAGATTCACCATTGTAG-CTTCAATCTTTTTAATTGCAATGTCG
* **** * ** * * * *
83408103 TGG-AGCAAGATTCGTTGTTGTAGCTTCAATCTATTCCACTGCACTGCCA
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGCAATGTCG
* * * * * **
83408152 GAGCAGGAAGATTCGCCATTGTGGCTTCAATCTTTTTAATTGCAATGTTA
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGCAATGTCG
** * ** * * *
83408202 GGGAAATAAGATTCACCGTTGTAGCTTCAAT-TTGTTCCACTGC-ATCGCCA
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTT-TTTAATTGCAAT-GTCG
* * * * * *
83408252 GAGAAGTAAGATTCACCGTTGTGGCATCAAACTTTTTAATTGCAATGTCG
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGCAATGTCG
* * ** ** ** ** *
83408302 GGGGAGCCAGATTCACTGTTGTAGCTTCAATCTGCTCCATTGCACCG-CTA
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGCAATGTC-G
* * ** *
83408352 GGGAAGTAAGATTCGCTGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGCAATGTCG
* ** * * * * * * *
83408402 GGGAAACTTGATTCCCCGTTGTAGCTTCAATCTGTTCT-ACTGCACTGCCA
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCT-TTTTAATTGCAATGTCG
* * * * *
83408452 GGGAAGTAAGATTCGCTATTGTGGCTTCAATCTTTTTAATTACAATGTCG
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGCAATGTCG
* *
83408502 GGGAAGCAAGATTCACCATTATAACTTCAATCT
1 GGGAAGCAAGATTCACCATTGTAGCTTCAATCT
83408535 GCTCCACTGT
Statistics
Matches: 1634, Mismatches: 642, Indels: 106
0.69 0.27 0.04
Matches are distributed among these distances:
48 4 0.00
49 172 0.11
50 1416 0.87
51 40 0.02
52 2 0.00
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.33
Consensus pattern (50 bp):
GGGAAGCAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGCAATGTCG
Found at i:83408787 original size:50 final size:50
Alignment explanation
Indices: 83408706--83413707 Score: 2058
Period size: 50 Copynumber: 100.1 Consensus size: 50
83408696 GTGGCCTTAG
* * * ** * *
83408706 TCTTTTTAATTGCAATGTCGGGGAAACAAGATTCACCATTGTAGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * * ** * *
83408756 CCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTGGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * *
83408806 TCTTTTTAATTGCAATGTCGAGGG-AGTCAGATTCGCCGTTGTAGATTCAA
1 TCTTTTTCATTGCAATG-CCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
** * * * ** * *
83408856 TCTACTCCACTGCATTGGTAGGGAAGTAAGATTCGCCATTGTGGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * *
83408906 TCTTTTTAATTGCAATGTCGAGGG-AGTCAGATTCGCCGTTGTAGATTCAA
1 TCTTTTTCATTGCAATG-CCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
** * * * ** * *
83408956 TCTACTCCACTGCATTGGTAGGGAAGTAAGATTCGCCATTGTGGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * * * *
83409006 TCTTTTTAATTGCAGTGTC-GGGAAAATAAGATTCACCGTTGTAGCTTGAA
1 TCTTTTTCATTGCAATGCCAGGG-AAGTAAGATTCGCCGTTGTAGCTTCAA
* * * * *** * * *
83409056 TCTATTCCACTACGCCGCTAGGGAAGTAAGATTCTCCATTGTAGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * **** * *
83409106 TCTTTTTAATTACAATGTTTTGGATGCAAGATTCGCCGTTGTAGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * ** * * * *
83409156 T-TTGTTCCACTGCACCGCTAGGGAAGTAAGATTCGCCATTGTGGCTTTAA
1 TCTT-TTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * ** **
83409206 TCTTTTTAATTGCAATATCC-GAGAAACAAGATTCATCGTTGTAGCTTCAA
1 TCTTTTTCATTGCAAT-GCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
** * * * ** * *
83409256 TCTGCTCCACTACACCGCCAGGGAAGTAAGATTCGTCGTTGTGGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * **
83409306 TCTTTTTAACTGCAATGTC-GTGG-AGTAAGATTCGTTGTTGTAGCTTCAA
1 TCTTTTTCATTGCAATGCCAG-GGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * ** * * ** * *
83409355 TCTATTCCACTGCACCGCCAGAGAAGTAAGTTTCGCTATTGTGGCTTCGA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * ** * * * *
83409405 TCTTTTTAATTGGAATGTTAGAGAAATAAGATT-ACCGTTGTAGTTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * ** * * * *
83409454 TCTGTTCCACTGCACCGTCAGGGAAGTAAGATTCGCTGTTGTGGCTGCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * * * * * *
83409504 ACTTTTTAATTGCAATGTCGGGGAAACT-TGATTCACCGTTGTTGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGG-AAGTAAGATTCGCCGTTGTAGCTTCAA
* * ** * *
83409554 T-TTGTTTCACTGTACCGCCAGGGAAGTAAGATTCGCTGTTGTGGCTTCAA
1 TCTT-TTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * * * * *
83409604 TCTTTTTAATTGCAATGTCGGGGAAACT-TGATTCACCGTTGTTGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGG-AAGTAAGATTCGCCGTTGTAGCTTCAA
* * ** * * *
83409654 T-TTGTTTCACTGTACCGCCAGGGAAGTAAGACTCGCCATTGTGGCTTCAA
1 TCTT-TTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * ** * ***
83409704 TCTTTTTAATTGCAATGTCAGGGAAACAAGGTTTATCGTTGTAGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * * * *
83409754 CCTGTTCCACTGCACTGCCAGGGAAGTAAGATTCGCCGTTCTAGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* ** * * * ** *
83409804 TCTTTTTAATTATAATGTCGGGGGAGCCAGATTCGCCGTTGTAGCTTTAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * ** * ** *
83409854 T-TTGCTCCACTGCACCGCTAGAAAAGTAAGATTCGCCGTTGTGGCTTCAA
1 TCTT-TTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * * * * ** *
83409904 TATTTTTAATTGCAATGTCTGGGAAATAAGATTCACTATTGTAGCTTGAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * **** *
83409954 TCTGTTCCAGTGCGCCACCAGGGAAGTAAGATTCACCGTTGTA-CTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * ** * *
83410003 T-TTTTTGAATTACAATGTTTAGGG-TGCAAGATTCGCCGTTGTAGCTTCAA
1 TCTTTTT-CATTGCAATG-CCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * * * *
83410053 T-TTGTTCCATTACACT-CCAAGGGAAGTAAGATTCACCATTGTGGCTTCAA
1 TCTT-TTTCATTGCAATGCC-AGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * * *
83410103 TCTTTTTAATTGTAATGTC-GAGGAAATAAGATTCACCGTTGTAGCTTCAA
1 TCTTTTTCATTGCAATGCCAG-GGAAGTAAGATTCGCCGTTGTAGCTTCAA
** * * * *** * *
83410153 TCTGCTCCACTACACCACTAGGGAAGTAAGATTCGCCGTTGT-GACTTTAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAG-CTTCAA
* * * **
83410203 TCTTTTTAATTGCAATGTC-GTGG-AGCAAGATTCGTTGTTGTAGCTTCAA
1 TCTTTTTCATTGCAATGCCAG-GGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * * * * * * *
83410252 TCTATTCCACTGCACTGCCAGAGCAGGAAGATTCGCCATTGTGGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* *** * *
83410302 TCTTTTTAATTGCAATTTTAGGGAAATAAGATTCACCGTTGTAGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * * * *
83410352 T-TTGTTCCACTGC-ATCGCCAGAGAAGTAAGATTCGTCGTTGTGGCATCAA
1 TCTT-TTTCATTGCAAT-GCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * * * ** *
83410402 ACTTTTTAATTGCAATGTCGGGGGAGCCAGATTCACCGTTGTAGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
** * *** * * *
83410452 TCTGCTCCATTGCACCACTAGGGAAGTAAGATTCGCTGTTGTGGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * * *** * *
83410502 TCTTTTTAATTGCAATGTCGGGGGAGCCTGATTCGCTGTTGTAGATTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
** * * * ** ** *
83410552 TCTACTCCACTGCATTGGTAGGGAAGTAAGATTCGCTATTGTGGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * * * * *
83410602 TCTTTTTAATTGCAGTGTC-GGAGAAATTAGATTCACCGTTGTAGCTTGAA
1 TCTTTTTCATTGCAATGCCAGG-GAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * *** * * *
83410652 TCTATTCCACTGCTCCGCTAGGGAAGTAAGATTCTCCATTGTAGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * **** * * * *
83410702 TCTTTTTAATTACAATGTTTTGGATGCAAGATTCACCTTTGTAGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * ** * * *
83410752 T-TTGTTCCACTGCACCGCTAGGGAAGTAAGATTCGCCATTGT-GACTTTAA
1 TCTT-TTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAG-CTTCAA
* * * ** * **
83410802 TATTTTTAATTGCAATGTCC-GAGAAACAGGATTCATCGTTGTAGCTTCAA
1 TCTTTTTCATTGCAATG-CCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
** * ** * ** * *
83410852 TCTGCTCCCCTACACCGCCAGGGAAGTAAGATTCGTCGTTGTGGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * * *
83410902 TCTTTTTAACTACAATGTC-GTGG-AGTAAGATTCGCTGTTGTAGCTTCAA
1 TCTTTTTCATTGCAATGCCAG-GGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * * ** * ** *
83410951 TCTATTCCACTGTACCGCCAGAGAAGTAAGATTCGCTATTGTGGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * ** * * * *
83411001 TCTTTTTAATTGGAATGTTAGAGAAATAAGATTCACCGTTGTAGTTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * * *
83411051 TCTGTTTCACTGCACCAT--CAGGGAAGTAAGATTCGCTGTTGTGGCTGCAA
1 TCTTTTTCATTGCA--ATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * * * ***
83411101 ACTTTTTAATTGCAATGTCGGGGGAGCT-AGATTCAATGTTGTAGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAG-TAAGATTCGCCGTTGTAGCTTCAA
** * ** ** *
83411151 TCTGCTCCATTGCACCGCCAGGGAAGTAAGATTCGCTATTGTGGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * * * * *
83411201 TCTTTTTAATTGCAATGTCGGGGAAACT-TGATTCACCGTTGTTG-TTGCAA
1 TCTTTTTCATTGCAATGCCAGGG-AAGTAAGATTCGCCGTTGTAGCTT-CAA
* * ** * * *
83411251 T-TTGTTTCACTGTACCGCCAGGGAAGTAAGATTCACCATTGTGGCTTCAA
1 TCTT-TTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * ** * ***
83411301 TCTTTTTAATTGCAATGTCAGGGAAACAAGGTTTATCGTTGTAGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * * ** * *
83411351 CCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCGCCATTGTGGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* ** ** * ** *
83411401 TCTTTTTAATTATAATGTAAGGGGAGCCAGGTTCGCCGTTGTAGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * ** * ** * *
83411451 T-TTGCTCCACTGCACCGCTAGAAAAGTAAGATTCACCGTTGTGGCTTCAA
1 TCTT-TTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * * * * * ** *
83411501 TATTTTTAATTGAAATGTCTGGGAAATAAGATTCACTATTGTAGCTTGAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * **** *
83411551 TCTGTTCCACTGCGCCACCAGGGAAGTAAGATTCACCGTTGTA-CTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
** * ** * *
83411600 TCTTTTAAATTACAATGTTTAGGG-TGCAAGATTCGCCGTTGTAGCTTCAA
1 TCTTTTTCATTGCAATG-CCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * * * *
83411650 T-TTGTTCCATTACACT-CCAAGGGAAGTAAGATTCACCATTGTGGCTTCAA
1 TCTT-TTTCATTGCAATGCC-AGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * * * *
83411700 TCTTTTTAATTGTAATGTCGGGGAAATAAGATTCACCGTTGTAGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
** * * * *** * *
83411750 TCTGCTCCACTACACCACTAGGGAAGTAAGATTCGCCGTTGT-GACTTTAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAG-CTTCAA
* * * **
83411800 TCTTTTTAATTGCAATGTC-GTGG-AGCAAGATTCGTTGTTGTAGCTTCAA
1 TCTTTTTCATTGCAATGCCAG-GGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * * * * * * *
83411849 TCTATTCCACTGCACTGCCAGAGCAGGAAGATTCGCCATTGTGGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* ** * *
83411899 TCTTTTTAATTGCAATGTTAGGGAAATAAGATTCACCGTTGTAGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * * * * *
83411949 T-TTGTTCCACTGCATTGTCAGAGAAGTAAGATTCGCCGTTGTGGCATCAA
1 TCTT-TTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * * * ** *
83411999 ACTTTTTAATTGCAATGTCGGGGGAGCCAGATTCACCGTTGTAGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
** * ** * * * *
83412049 TCTGCTCCATTGCACCGCTAGGGAAGTAAGATTTGCTGTTGTGGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * ** * * *
83412099 TCTTTTTAATTGCAATGTCGGGGAAACATGATTCCCCGTTGTGGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * ** * * *
83412149 TC-TGTTCTACTGCACCGCGAGGGAAGTAAGATTCGCTGTTGTGGCTTCAA
1 TCTTTTTC-ATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * * * * * *
83412199 TCTTTTTAATTACAATGTCGGGGAAGCAAGATTCACCATTATAGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
** * * * ** * ** * * *
83412249 TCTGCTCCACTGTACCGACAGAAAAGTAAGATTTGCCATTGTGGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* *** *
83412299 TCTTTTTAATTGCAAT-ATTGTGG-AGTAAGATTCGCTGTTGTAGCTTCAA
1 TCTTTTTCATTGCAATGCCAG-GGAAGTAAGATTCGCCGTTGTAGCTTCAA
** * * * *
83412348 T-TTGTGCCACTGCACTGCCAGGGAAGTAAGATTCGCCATTGTGGCCTT-AA
1 TCTT-TTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAG-CTTCAA
* * * ** * *
83412398 TCTTTTTAATTGCAATGTCGGGGAAACAAGATTCCCCATTGTAGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * * ***
83412448 CCTGTTCCACTGCACCACCAGGGAAGTAAGATTCGCCGTTG-AGGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTA-GCTTCAA
* * * * ** *** * *
83412498 TATTTTTAATTGCAATGTCGGGGGGGCCTGATTCGCCATTGTAGATTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
** * * * ** * *
83412548 TCTCCTCCACTGCATTGGTAGGGAAGTAAGATTCGCCATTGTGGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* ** * * * * *
83412598 TCTTTTTAATTGCGGTGTCGGGGAAATAAGATTCACCGTTGTAGCTTGAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * * * *
83412648 TCTATTCCACTGC--TCCTCTAGGGAAGTAAGATTCTCCATTGTAGCTTCAA
1 TCTTTTTCATTGCAATGC-C-AGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* **** * *
83412698 TCTTTTT-ATTTACAATGTTTTGGATGCAAGATTCGCCGTTGTAGCTTCAA
1 TCTTTTTCA-TTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * ** * * * *
83412748 T-TTGTTCCACTGCACCGCTAGGGAAGTAAGATTCGCCATTGTGGCTTTAA
1 TCTT-TTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * ** ** *
83412798 TCTTTTTAATTGCAATGTCC-GAGAAACAAGATTCATCGTTGTGGCTTCAA
1 TCTTTTTCATTGCAATG-CCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
** * ** * * * *
83412848 TCTGCTCCCCTACACTGCCAGGGAAGTAAGATTCGTCGTTGTGGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * * *
83412898 TCTTTTTAACTACAATGTC-GTGG-AGTAAGATTCGCTGTTGTAGCTTCAA
1 TCTTTTTCATTGCAATGCCAG-GGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * * ** * ** *
83412947 TCTATTCCACTGTACCGCCAGAGAAGTAAGATTCGCTATTGTGGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * * *
83412997 TCTTTTTAATTGCAATGTTAGGCAATGTCGGGGAAGCAAGATTCACCATTGTAGCTTCAA
1 TC--TTT--TT-C-A--TT--GCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
** * * ** ** * * * *
83413057 TCTGCTCCACTATAGCGACAGGGAAGTAAGGTTCACCGTTGTGGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
** * **
83413107 TCTTTTT-ATTTGCAATG-TTGTGG-AGCAAGATTCGCTATTGTAGCTTCAA
1 TCTTTTTCA-TTGCAATGCCAG-GGAAGTAAGATTCGCCGTTGTAGCTTCAA
* ** ** * * *
83413156 T-TTGTTCCACGGCACCGCCAGGGAAGTAAGATTTGCCATTGTGGCTTCAA
1 TCTT-TTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * ** *
83413206 TCTTTTTAATTGCAATGTCGGGGAAACAAGATTCACCGTTGTAGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * * ** * *
83413256 TCTGTTCCACTGTACCGCCAGGGAAGTAGGATTCGCCGTTGTGGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* ** **
83413306 TCTTTTTAATTGCAATG-TTGGGAGAGCCAGATTCGCCGTTGTAGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGA-AGTAAGATTCGCCGTTGTAGCTTCAA
** * * *** * * * *
83413356 TCTGCTCCACTGCACCACTAGGGAAGTATGATTCGCTGTTGTGGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * * * **
83413406 TCTTTTTAATTGCAATGTCGGGGAAATAAGATTCACCGTTGT-GCTTGTA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * *
83413455 TCTGTTTCACTGTGC--CGCCAGGGAAGTAAGATTCACCGTTGTACCTTCAA
1 TCTTTTTCA-T-TGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * *** * * *
83413505 TCTTTTTAATTACAATGTTTGGGAAGCAAGATTTGCCATTGTAGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
** * * * ** * * *
83413555 TCTGGTCCACTGTACCGCAAGGAAAGTAAGATTCGCCGTTGT-GATTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAG-CTTCAA
* * *
83413605 TCTTTTTAATTGCAATGTC-GAGGAAGTAAGATTCGCTGTTGTAGCTTCAA
1 TCTTTTTCATTGCAATGCCAG-GGAAGTAAGATTCGCCGTTGTAGCTTCAA
* * * * * * * *
83413655 TATGTTCCACTACACTGTCAGGGAAGTAAGATTCGCCATTGTAGCTTCAA
1 TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
83413705 TCT
1 TCT
83413708 ATTCCACTAT
Statistics
Matches: 3459, Mismatches: 1359, Indels: 268
0.68 0.27 0.05
Matches are distributed among these distances:
48 12 0.00
49 451 0.13
50 2868 0.83
51 83 0.02
52 6 0.00
54 2 0.00
55 2 0.00
56 2 0.00
58 2 0.00
60 31 0.01
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.34
Consensus pattern (50 bp):
TCTTTTTCATTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAA
Found at i:83408791 original size:125 final size:124
Alignment explanation
Indices: 83408570--83408817 Score: 309
Period size: 125 Copynumber: 2.0 Consensus size: 124
83408560 AGATTTGCCG
* * * * * ** **
83408570 TTGTGGCTTTAATCTTTTTAATTGCAATATTGTGGAGCAAGATTCGCTGTTGTAGCTTCAATTTG
1 TTGTGGCCTTAATCTTTTTAATTGCAATATCGGGGAACAAGATTCACCATTGTAGCTTCAACCTG
* **
83408635 TGCCACTGTATTGCCAGGGAAGTAAGATTCGCCATTATGGCCTT-AATCTTTTTAATTGA
66 TGCCACTGCACCGCCAGGGAAGTAAGATTCGCCATTATGG-CTTCAATCTTTTTAATTGA
* *
83408694 TTGTGGCCTTAGTCTTTTTAATTGCAATGTCGGGGAAACAAGATTCACCATTGTAGCTTCAACCT
1 TTGTGGCCTTAATCTTTTTAATTGCAATATCGGGG-AACAAGATTCACCATTGTAGCTTCAACCT
* ** *
83408759 GTTCCACTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTGGCTTCAATCTTTTTAATTG
65 GTGCCACTGCACCGCCAGGGAAGTAAGATTCGCCATTATGGCTTCAATCTTTTTAATTG
83408818 CAATGTCGAG
Statistics
Matches: 104, Mismatches: 18, Indels: 3
0.83 0.14 0.02
Matches are distributed among these distances:
124 33 0.32
125 71 0.68
ACGTcount: A:0.23, C:0.18, G:0.21, T:0.38
Consensus pattern (124 bp):
TTGTGGCCTTAATCTTTTTAATTGCAATATCGGGGAACAAGATTCACCATTGTAGCTTCAACCTG
TGCCACTGCACCGCCAGGGAAGTAAGATTCGCCATTATGGCTTCAATCTTTTTAATTGA
Found at i:83413852 original size:89 final size:88
Alignment explanation
Indices: 83413759--83414629 Score: 830
Period size: 89 Copynumber: 9.8 Consensus size: 88
83413749 TCTACTTCAA
* * * * * *
83413759 TGCCAGTATAGGAAGACGAGATATACAATCTTCAGTCTGCTCCGCTGCAAAATCAGGGAGGCAAG
1 TGCCAGTACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTCCGCTGCAAACTCAGGGAGGC-AG
*
83413824 GCTGGTGTCTTCGATCTACTTCGC
65 GCTGGTGTCTTCGATCTGCTTCGC
* * * * *
83413848 TGCCAATACAGAAAGACAAGATCTGCTATCTTTAGTCTGCTCCACTGCAAATTCAGGGAGGTCAG
1 TGCCAGTACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTCCGCTGCAAACTCAGGGAGG-CAG
* * *
83413913 GCTAGTGTCTTCGATTTGCTTCAC
65 GCTGGTGTCTTCGATCTGCTTCGC
* * * * * *
83413937 TGTCGGTACAGAAAGACAAGATGTGCTATCTTCAGTCTGCTCCACTGCAAACTCAAGGAGGTCAG
1 TGCCAGTACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTCCGCTGCAAACTCAGGGAGG-CAG
*
83414002 GCTAGTGTCTTCGATCTGCTTCGC
65 GCTGGTGTCTTCGATCTGCTTCGC
* * * * * * * *
83414026 TGCC-GTTACAAGAATACAAGATCTACTATCTTCAGTCTACTTCACTACAAATTCAGGGAGGTCA
1 TGCCAG-TACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTCCGCTGCAAACTCAGGGAGG-CA
* *
83414090 GGCTGGTGTCTTCGATCTGGTTTGC
64 GGCTGGTGTCTTCGATCTGCTTCGC
* * * * * * * *
83414115 TGCTAGTACCGGAATACAAGATCTACAATCTTCAGTCTGCTCCGCCGCAAA-TATAGGGAGACGA
1 TGCCAGTACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTCCGCTGCAAACT-CAGGGAGGC-A
* * *
83414179 GGCTGGTGTCTTTGATCTGTTTTGC
64 GGCTGGTGTCTTCGATCTGCTTCGC
* * * * * * ***
83414204 TGCCAATACAGGAAGACAAAATCTGCTATCTTTAGTATGCTCTGCTGTAAACTCAATAAAGTG-A
1 TGCCAGTACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTCCGCTGCAAACTC-AGGGAG-GCA
*
83414268 GGCTGGTGTCTTCAATCTGCTTCGC
64 GGCTGGTGTCTTCGATCTGCTTCGC
* * * * * * * *
83414293 TGCCAATACCGGAAGATAAGATTTGCTATCTTCAGTCTACTCCGTTGCAAACTCAAGGATGTCAG
1 TGCCAGTACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTCCGCTGCAAACTCAGGGA-GGCAG
* * *
83414358 GCTGGTATCTTCGATCTACTTCAC
65 GCTGGTGTCTTCGATCTGCTTCGC
* * * * *
83414382 TGTCGGTACAGAAAGACAAGATCTGTTATCTTCAGTCTGCTCCGCTGCAAATTCAGGGAGGCAAG
1 TGCCAGTACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTCCGCTGCAAACTCAGGGAGGC-AG
* *
83414447 ACTAGTGTCTTCGATCTGCTTCGC
65 GCTGGTGTCTTCGATCTGCTTCGC
* * * * * * * *
83414471 TGACAATACAGGAAGATAATATCTGCTATCTTCAGTCTACTCCGCTACAAACTTAGGGAAGTCAG
1 TGCCAGTACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTCCGCTGCAAACTCAGGG-AGGCAG
* *
83414536 GCTGGTGTCTTCGGTCTGCTTCGT
65 GCTGGTGTCTTCGATCTGCTTCGC
* ** * *
83414560 TACTGGTACAGGAAGACAAGATCTACTATCTTCAGTCTGCTCCGCTACAAACTCAGGGAGGTCAG
1 TGCCAGTACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTCCGCTGCAAACTCAGGGAGG-CAG
83414625 GCTGG
65 GCTGG
83414630 ATATGATGAC
Statistics
Matches: 635, Mismatches: 134, Indels: 26
0.80 0.17 0.03
Matches are distributed among these distances:
88 9 0.01
89 617 0.97
90 9 0.01
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.28
Consensus pattern (88 bp):
TGCCAGTACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTCCGCTGCAAACTCAGGGAGGCAGG
CTGGTGTCTTCGATCTGCTTCGC
Found at i:83414233 original size:267 final size:266
Alignment explanation
Indices: 83413768--83414629 Score: 956
Period size: 267 Copynumber: 3.2 Consensus size: 266
83413758 ATGCCAGTAT
* * * * * *
83413768 AGGAAGACGAGATATACAATCTTCAGTCTGCTCCGCTGCAAAATCAGGGAGG-CAAGGCTGGTGT
1 AGGAAGACAAGATCTACTATCTTCAGTCTACTCCGCTACAAACTCAGGGAGGTC-AGGCTGGTGT
* * * *
83413832 CTTCGATCTACTTCGCTGCCAATACAGAAAGACAAGATCTGCTATCTTTAGTCTGCTCCACTGCA
65 CTTCGATCTACTTCGCTGCTAGTACAGAAAGACAAGATCTGCTATCTTCAGTCTGCTCCGCTGCA
* * * * ** * * *
83413897 AATTCAGGGAGGTCAGGCTAGTGTCTTCGATTTGCTTCACTGTCGGTACAGAAAGACAAGATGTG
130 AATTCAGGGA-GACAGGCTAGTGTCTTCGATCTGCTTCGCTGACAATACAGGAAGACAAAATCTG
* * *
83413962 CTATCTTCAGTCTGCTCCACTGCAAACTCAAGGAGGTCAGGCTAGTGTCTTCGATCTGCTTCGCT
194 CTATCTTCAGTCTGCTCCGCTGCAAACTCAAGGAAGTCAGGCTGGTGTCTTCGATCTGCTTCGCT
*
83414027 GCCGTTAC
259 GCCGATAC
* * * * *
83414035 AAGAATACAAGATCTACTATCTTCAGTCTACTTCACTACAAATTCAGGGAGGTCAGGCTGGTGTC
1 AGGAAGACAAGATCTACTATCTTCAGTCTACTCCGCTACAAACTCAGGGAGGTCAGGCTGGTGTC
** * * * * * * *
83414100 TTCGATCTGGTTTGCTGCTAGTACCGGAATACAAGATCTACAATCTTCAGTCTGCTCCGCCGCAA
66 TTCGATCTACTTCGCTGCTAGTACAGAAAGACAAGATCTGCTATCTTCAGTCTGCTCCGCTGCAA
* * * * *
83414165 ATAT-AGGGAGACGAGGCTGGTGTCTTTGATCTGTTTTGCTGCCAATACAGGAAGACAAAATCTG
131 AT-TCAGGGAGAC-AGGCTAGTGTCTTCGATCTGCTTCGCTGACAATACAGGAAGACAAAATCTG
* * * * ** * *
83414229 CTATCTTTAGTATGCTCTGCTGTAAACTCAATAAAGTGAGGCTGGTGTCTTCAATCTGCTTCGCT
194 CTATCTTCAGTCTGCTCCGCTGCAAACTCAAGGAAGTCAGGCTGGTGTCTTCGATCTGCTTCGCT
*
83414294 GCCAATAC
259 GCCGATAC
* * * * * * * * *
83414302 CGGAAGATAAGATTTGCTATCTTCAGTCTACTCCGTTGCAAACTCAAGGATGTCAGGCTGGTATC
1 AGGAAGACAAGATCTACTATCTTCAGTCTACTCCGCTACAAACTCAGGGAGGTCAGGCTGGTGTC
* * *
83414367 TTCGATCTACTTCACTG-TCGGTACAGAAAGACAAGATCTGTTATCTTCAGTCTGCTCCGCTGCA
66 TTCGATCTACTTCGCTGCT-AGTACAGAAAGACAAGATCTGCTATCTTCAGTCTGCTCCGCTGCA
* * * *
83414431 AATTCAGGGAGGCAAGACTAGTGTCTTCGATCTGCTTCGCTGACAATACAGGAAGATAATATCTG
130 AATTCAGGGAGAC-AGGCTAGTGTCTTCGATCTGCTTCGCTGACAATACAGGAAGACAAAATCTG
* * * * * *
83414496 CTATCTTCAGTCTACTCCGCTACAAACTTAGGGAAGTCAGGCTGGTGTCTTCGGTCTGCTTCGTT
194 CTATCTTCAGTCTGCTCCGCTGCAAACTCAAGGAAGTCAGGCTGGTGTCTTCGATCTGCTTCGCT
* * *
83414561 ACTGGTAC
259 GCCGATAC
*
83414569 AGGAAGACAAGATCTACTATCTTCAGTCTGCTCCGCTACAAACTCAGGGAGGTCAGGCTGG
1 AGGAAGACAAGATCTACTATCTTCAGTCTACTCCGCTACAAACTCAGGGAGGTCAGGCTGG
83414630 ATATGATGAC
Statistics
Matches: 478, Mismatches: 112, Indels: 10
0.80 0.19 0.02
Matches are distributed among these distances:
266 4 0.01
267 472 0.99
268 2 0.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.28
Consensus pattern (266 bp):
AGGAAGACAAGATCTACTATCTTCAGTCTACTCCGCTACAAACTCAGGGAGGTCAGGCTGGTGTC
TTCGATCTACTTCGCTGCTAGTACAGAAAGACAAGATCTGCTATCTTCAGTCTGCTCCGCTGCAA
ATTCAGGGAGACAGGCTAGTGTCTTCGATCTGCTTCGCTGACAATACAGGAAGACAAAATCTGCT
ATCTTCAGTCTGCTCCGCTGCAAACTCAAGGAAGTCAGGCTGGTGTCTTCGATCTGCTTCGCTGC
CGATAC
Found at i:83414447 original size:45 final size:44
Alignment explanation
Indices: 83414395--83414619 Score: 111
Period size: 45 Copynumber: 5.0 Consensus size: 44
83414385 CGGTACAGAA
83414395 AGACAAGATCTGTTATCTTCAGTCTGCTCCGCTGCAAATTCAGGG
1 AGACAAGATCTG-TATCTTCAGTCTGCTCCGCTGCAAATTCAGGG
* * * * *
83414440 AGGCAAGA-CTAGTGTCTTC-GATCTGCTTCGCTG-ACAATACAGGA
1 AGACAAGATCT-GTATCTTCAG-TCTGCTCCGCTGCA-AATTCAGGG
* * * *
83414484 AGATAATATCTGCTATCTTCAGTCTACTCCGCTACAAACTT-AGGG
1 AGACAAGATCTG-TATCTTCAGTCTGCTCCGCTGCAAA-TTCAGGG
* * * * * * * *** * *
83414529 AAGTC-AG-GCTGGTGTCTTCGGTCTGCTTCGTTACTGGTACAGGA
1 -AGACAAGATCT-GTATCTTCAGTCTGCTCCGCTGCAAATTCAGGG
* * *
83414573 AGACAAGATCTACTATCTTCAGTCTGCTCCGCTACAAACTCAGGG
1 AGACAAGATCT-GTATCTTCAGTCTGCTCCGCTGCAAATTCAGGG
83414618 AG
1 AG
83414620 GTCAGGCTGG
Statistics
Matches: 125, Mismatches: 42, Indels: 26
0.65 0.22 0.13
Matches are distributed among these distances:
43 6 0.05
44 56 0.45
45 58 0.46
46 5 0.04
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (44 bp):
AGACAAGATCTGTATCTTCAGTCTGCTCCGCTGCAAATTCAGGG
Found at i:83419533 original size:3 final size:3
Alignment explanation
Indices: 83419468--83419513 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
83419458 GATGATGGTG
83419468 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
83419514 GATTAGTTTA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:83425500 original size:11 final size:11
Alignment explanation
Indices: 83425486--83425569 Score: 55
Period size: 11 Copynumber: 7.2 Consensus size: 11
83425476 ATTGTTTGAT
83425486 TTTTACAGAAA
1 TTTTACAGAAA
83425497 TTTTACAGAAA
1 TTTTACAGAAA
**
83425508 TTGATTGATTG--A
1 TT--TT-ACAGAAA
83425520 TTTTACAGAAA
1 TTTTACAGAAA
*
83425531 TTTTATAGAAA
1 TTTTACAGAAA
*
83425542 TTTTAATACAAAAAA
1 -TTT--TAC-AGAAA
83425557 TTTTACAGAAA
1 TTTTACAGAAA
83425568 TT
1 TT
83425570 GATTGTTTGA
Statistics
Matches: 56, Mismatches: 8, Indels: 18
0.68 0.10 0.22
Matches are distributed among these distances:
9 2 0.04
10 2 0.04
11 30 0.54
12 9 0.16
13 2 0.04
14 7 0.12
15 4 0.07
ACGTcount: A:0.44, C:0.06, G:0.10, T:0.40
Consensus pattern (11 bp):
TTTTACAGAAA
Found at i:83425529 original size:34 final size:35
Alignment explanation
Indices: 83425474--83425543 Score: 115
Period size: 34 Copynumber: 2.0 Consensus size: 35
83425464 AGTTGTTTTC
*
83425474 TGATTGTTTGATTTTTACAGAAATTTTACAGAAAT
1 TGATTGATTGATTTTTACAGAAATTTTACAGAAAT
*
83425509 TGATTGATTGA-TTTTACAGAAATTTTATAGAAAT
1 TGATTGATTGATTTTTACAGAAATTTTACAGAAAT
83425543 T
1 T
83425544 TTAATACAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
34 23 0.70
35 10 0.30
ACGTcount: A:0.36, C:0.04, G:0.14, T:0.46
Consensus pattern (35 bp):
TGATTGATTGATTTTTACAGAAATTTTACAGAAAT
Found at i:83426442 original size:13 final size:13
Alignment explanation
Indices: 83426405--83426468 Score: 83
Period size: 13 Copynumber: 4.9 Consensus size: 13
83426395 ACACTCAAAT
* *
83426405 TTTTCAAAAGTAG
1 TTTTCAAAAGCAC
*
83426418 TTCTCAAAAGCAC
1 TTTTCAAAAGCAC
* *
83426431 TTTTCCACAGCAC
1 TTTTCAAAAGCAC
83426444 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
83426457 TTTTCAAAAGCA
1 TTTTCAAAAGCA
83426469 TTGCCAAACT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 43 1.00
ACGTcount: A:0.36, C:0.23, G:0.09, T:0.31
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:83426741 original size:20 final size:20
Alignment explanation
Indices: 83426697--83426743 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
83426687 TATTGGTTAT
*
83426697 ATTTTA-ATATTTAAAATAT
1 ATTTTATATATTTAAAATAA
* *
83426716 AGTTTATATATTTAAATTAA
1 ATTTTATATATTTAAAATAA
83426736 ATTTTATA
1 ATTTTATA
83426744 AATAATTGAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (20 bp):
ATTTTATATATTTAAAATAA
Found at i:83428629 original size:62 final size:61
Alignment explanation
Indices: 83428514--83428629 Score: 135
Period size: 62 Copynumber: 1.9 Consensus size: 61
83428504 TAATTTGGAT
* * ** *
83428514 AAAAGAAAAAGTTTAAGTCCCAATGTAAGAACAATTTTCAAGTTCAATGCTTAACTCAAAC
1 AAAAAAAAAAGTTTAAGCCCCAATGTAAGAACAATTCCCAAGTTCAATACTTAACTCAAAC
* * *
83428575 AAAAAAAAAAGGTTTAAGCCCCAATGTGATAACAATTCCCAATTTCAGA-ACTTAA
1 AAAAAAAAAA-GTTTAAGCCCCAATGTAAGAACAATTCCCAAGTTCA-ATACTTAA
83428630 TTTTGATAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
61 9 0.20
62 35 0.78
63 1 0.02
ACGTcount: A:0.47, C:0.17, G:0.11, T:0.25
Consensus pattern (61 bp):
AAAAAAAAAAGTTTAAGCCCCAATGTAAGAACAATTCCCAAGTTCAATACTTAACTCAAAC
Found at i:83429084 original size:31 final size:31
Alignment explanation
Indices: 83429049--83429115 Score: 134
Period size: 31 Copynumber: 2.2 Consensus size: 31
83429039 TTAGAAAAAA
83429049 TATATTTATTAATTTTAGTTATATTGTTGTG
1 TATATTTATTAATTTTAGTTATATTGTTGTG
83429080 TATATTTATTAATTTTAGTTATATTGTTGTG
1 TATATTTATTAATTTTAGTTATATTGTTGTG
83429111 TATAT
1 TATAT
83429116 GGAAAAAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.27, C:0.00, G:0.12, T:0.61
Consensus pattern (31 bp):
TATATTTATTAATTTTAGTTATATTGTTGTG
Found at i:83438601 original size:11 final size:12
Alignment explanation
Indices: 83438585--83438629 Score: 53
Period size: 11 Copynumber: 4.1 Consensus size: 12
83438575 ATCTATTTTT
83438585 TTAAAAAA-ATA
1 TTAAAAAATATA
83438596 TTAAAAAATAT-
1 TTAAAAAATATA
*
83438607 TT-TAAAATA-A
1 TTAAAAAATATA
83438617 TTAAAAAATATA
1 TTAAAAAATATA
83438629 T
1 T
83438630 GTTTTTCAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
10 8 0.29
11 16 0.57
12 4 0.14
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
TTAAAAAATATA
Found at i:83438603 original size:10 final size:10
Alignment explanation
Indices: 83438588--83438627 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
83438578 TATTTTTTTA
83438588 AAAAAATATT
1 AAAAAATATT
83438598 AAAAAATATT
1 AAAAAATATT
**
83438608 TTAAAATAATT
1 AAAAAAT-ATT
83438619 AAAAAATAT
1 AAAAAATAT
83438628 ATGTTTTTCA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
10 17 0.68
11 8 0.32
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (10 bp):
AAAAAATATT
Found at i:83438629 original size:23 final size:23
Alignment explanation
Indices: 83438583--83438629 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
83438573 TTATCTATTT
*
83438583 TTTTAAAAAAATATTAAAAAATA
1 TTTTAAAAAAATATAAAAAAATA
*
83438606 TTTTAAAATAAT-TAAAAAATATA
1 TTTTAAAAAAATATAAAAAA-ATA
83438629 T
1 T
83438630 GTTTTTCAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 6 0.29
23 15 0.71
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (23 bp):
TTTTAAAAAAATATAAAAAAATA
Found at i:83439936 original size:17 final size:17
Alignment explanation
Indices: 83439907--83439940 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
83439897 TTTATTTTAA
83439907 TTTAGATTTGAATCCAT
1 TTTAGATTTGAATCCAT
83439924 TTTA-ATTTCGAATCCAT
1 TTTAGATTT-GAATCCAT
83439941 ACTTGCATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.29, C:0.15, G:0.09, T:0.47
Consensus pattern (17 bp):
TTTAGATTTGAATCCAT
Found at i:83441065 original size:56 final size:60
Alignment explanation
Indices: 83440971--83441089 Score: 156
Period size: 56 Copynumber: 2.0 Consensus size: 60
83440961 TTTGACAAGT
**
83440971 TTAGATACTAAATTAGGAAATTTTGTCAAGTTCAAGTATCAAATT-G-ATAAAAAAAA-C
1 TTAGATACTAAATTAGGAAATAATGTCAAGTTCAAGTATCAAATTGGAATAAAAAAAATC
* * **
83441028 TTAGATACTAACTTA-GTAATAATGTCAAGTTTGAGTATCAAATTGGAATAAAAAAAATC
1 TTAGATACTAAATTAGGAAATAATGTCAAGTTCAAGTATCAAATTGGAATAAAAAAAATC
83441087 TTA
1 TTA
83441090 AATAAAAAAT
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
56 24 0.45
57 15 0.28
58 10 0.19
59 4 0.08
ACGTcount: A:0.46, C:0.08, G:0.13, T:0.33
Consensus pattern (60 bp):
TTAGATACTAAATTAGGAAATAATGTCAAGTTCAAGTATCAAATTGGAATAAAAAAAATC
Found at i:83443993 original size:7 final size:7
Alignment explanation
Indices: 83443981--83444036 Score: 112
Period size: 7 Copynumber: 8.0 Consensus size: 7
83443971 ATGTATTTAT
83443981 TAATTAA
1 TAATTAA
83443988 TAATTAA
1 TAATTAA
83443995 TAATTAA
1 TAATTAA
83444002 TAATTAA
1 TAATTAA
83444009 TAATTAA
1 TAATTAA
83444016 TAATTAA
1 TAATTAA
83444023 TAATTAA
1 TAATTAA
83444030 TAATTAA
1 TAATTAA
83444037 AAAATATTTA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 49 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (7 bp):
TAATTAA
Found at i:83448761 original size:46 final size:47
Alignment explanation
Indices: 83448661--83448778 Score: 121
Period size: 46 Copynumber: 2.5 Consensus size: 47
83448651 CATATGCTAG
* * * * *
83448661 ACCAGTGGTTTATCCACAACATATTTTAGTCAGCAATCATCTACTCA
1 ACCAATGGTTCATCCACAACATATTTTAGCCAACAATCACCTACTCA
* * * *
83448708 ACCAATGGTTCATCCACCA-ATATTTTAGCCAACAGTCACCTGCTCG
1 ACCAATGGTTCATCCACAACATATTTTAGCCAACAATCACCTACTCA
* * *
83448754 ACTAATGGTTCATCCATAACGTATT
1 ACCAATGGTTCATCCACAACATATT
83448779 AGCAGCTTTT
Statistics
Matches: 57, Mismatches: 13, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
46 37 0.65
47 20 0.35
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.31
Consensus pattern (47 bp):
ACCAATGGTTCATCCACAACATATTTTAGCCAACAATCACCTACTCA
Found at i:83453190 original size:7 final size:7
Alignment explanation
Indices: 83453178--83453277 Score: 71
Period size: 7 Copynumber: 13.7 Consensus size: 7
83453168 GTTCATATTC
83453178 AAAAAAG
1 AAAAAAG
83453185 AAAAAA-
1 AAAAAAG
*
83453191 AGAAAA-
1 AAAAAAG
*
83453197 AAAAGAG
1 AAAAAAG
*
83453204 AAAAGAG
1 AAAAAAG
83453211 AAAAAAG
1 AAAAAAG
83453218 AAAGAAAAG
1 -AA-AAAAG
83453227 AAGAAAAG
1 AA-AAAAG
*
83453235 AAAGAAG
1 AAAAAAG
83453242 AAAGGAAA-
1 AAA--AAAG
83453250 AGAAAAAG
1 A-AAAAAG
*
83453258 AAAAAAA
1 AAAAAAG
83453265 AGAAAAAG
1 A-AAAAAG
83453273 AAAAA
1 AAAAA
83453278 GGAGAGGCCA
Statistics
Matches: 77, Mismatches: 8, Indels: 16
0.76 0.08 0.16
Matches are distributed among these distances:
6 9 0.12
7 39 0.51
8 20 0.26
9 9 0.12
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:83453191 original size:8 final size:8
Alignment explanation
Indices: 83453178--83453271 Score: 86
Period size: 8 Copynumber: 11.5 Consensus size: 8
83453168 GTTCATATTC
83453178 AAAAAAGA
1 AAAAAAGA
83453186 AAAAAAGA
1 AAAAAAGA
83453194 AAAAAA-A
1 AAAAAAGA
*
83453201 GAGAAAAGA
1 -AAAAAAGA
83453210 GAAAAAAGA
1 -AAAAAAGA
83453219 AAGAAAAGA
1 AA-AAAAGA
*
83453228 AGAAAAG-
1 AAAAAAGA
*
83453235 AAAGAAGA
1 AAAAAAGA
83453243 AAGGAAAAGA
1 AA--AAAAGA
*
83453253 AAAAGA-A
1 AAAAAAGA
83453260 AAAAAAGA
1 AAAAAAGA
83453268 AAAA
1 AAAA
83453272 GAAAAAGGAG
Statistics
Matches: 71, Mismatches: 8, Indels: 14
0.76 0.09 0.15
Matches are distributed among these distances:
7 12 0.17
8 36 0.51
9 16 0.23
10 7 0.10
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (8 bp):
AAAAAAGA
Found at i:83453197 original size:9 final size:9
Alignment explanation
Indices: 83453178--83453271 Score: 79
Period size: 9 Copynumber: 10.3 Consensus size: 9
83453168 GTTCATATTC
83453178 AAAAAAG-A
1 AAAAAAGAA
83453186 AAAAAAGAA
1 AAAAAAGAA
83453195 AAAAAAG--
1 AAAAAAGAA
* *
83453202 AGAAAAGAG
1 AAAAAAGAA
83453211 AAAAAAGAA
1 AAAAAAGAA
*
83453220 AGAAAAG-A
1 AAAAAAGAA
*
83453228 AGAAAAGAA
1 AAAAAAGAA
83453237 AGAAGAAAGGAAA
1 A-AA-AAA-G-AA
83453250 AGAAAAAGAA
1 A-AAAAAGAA
83453260 AAAAAAGAA
1 AAAAAAGAA
83453269 AAA
1 AAA
83453272 GAAAAAGGAG
Statistics
Matches: 73, Mismatches: 5, Indels: 15
0.78 0.05 0.16
Matches are distributed among these distances:
7 6 0.08
8 15 0.21
9 34 0.47
10 4 0.05
11 4 0.05
12 4 0.05
13 6 0.08
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (9 bp):
AAAAAAGAA
Found at i:83453214 original size:25 final size:24
Alignment explanation
Indices: 83453179--83453271 Score: 109
Period size: 25 Copynumber: 3.8 Consensus size: 24
83453169 TTCATATTCA
83453179 AAAAAGA-AAAAAAGAAAAAAAAG
1 AAAAAGAGAAAAAAGAAAAAAAAG
*
83453202 AGAAAAGAGAAAAAAGAAAGAAAAG
1 A-AAAAGAGAAAAAAGAAAAAAAAG
* *
83453227 AAGAAA-AGAAAGAAGAAAGGAAAAG
1 AA-AAAGAGAAAAAAGAAA-AAAAAG
*
83453252 AAAAAGAAAAAAAAGAAAAA
1 AAAAAGAGAAAAAAGAAAAA
83453272 GAAAAAGGAG
Statistics
Matches: 60, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
23 1 0.02
24 22 0.37
25 37 0.62
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (24 bp):
AAAAAGAGAAAAAAGAAAAAAAAG
Found at i:83453231 original size:37 final size:34
Alignment explanation
Indices: 83453179--83453280 Score: 118
Period size: 37 Copynumber: 2.9 Consensus size: 34
83453169 TTCATATTCA
83453179 AAAAAGAAAAAAAGAAAAAAAAGAGAAAAGAGAAAA-
1 AAAAAG-AAAAAAGAAAAAAAAGA-AAAAG-GAAAAG
*
83453215 AAGAAAGAAAAGAAGAAAAGAAAGAAGAAAGGAAAAG
1 AA-AAAGAAAA-AAGAAAAAAAAGAA-AAAGGAAAAG
*
83453252 AAAAAGAAAAAA-AAGAAAAAGAAAAAGGA
1 AAAAAGAAAAAAGAAAAAAAAGAAAAAGGA
83453281 GAGGCCAAGG
Statistics
Matches: 59, Mismatches: 3, Indels: 11
0.81 0.04 0.15
Matches are distributed among these distances:
33 6 0.10
34 9 0.15
35 2 0.03
36 20 0.34
37 22 0.37
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (34 bp):
AAAAAGAAAAAAGAAAAAAAAGAAAAAGGAAAAG
Found at i:83455063 original size:132 final size:131
Alignment explanation
Indices: 83454528--83455445 Score: 1089
Period size: 132 Copynumber: 7.1 Consensus size: 131
83454518 GGAAGATTGA
* *
83454528 TAATTCTATCTCCCT-GGTTGGCAGTGGAATAGATTGAAGATTTTAGATCTTATCTCCC--A--A
1 TAATTCTATCTCCCTAGG-TAGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
* * *
83454588 -AGTGGAGCAGATTGAAGATGACA-ATTTTTACCTCCCTGTGATTACAGTGGAGTACATTGAAGC
65 GAGTGGAGCAGATCGAAGATGGCAGA-TTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
83454651 C-G
129 CAG
* * **
83454653 ATAATTC-ATCACCCT-GGTTGGCAGTGGAATAGATTGAAGATTGAAGATCTTATCTCCC--A--
1 -TAATTCTATCTCCCTAGG-TAGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGC
* * * *
83454712 A-AGTGGAGCGGATTGAAGATGGCAGATTTTACCTCCCTGTGATTACAGTGAAGTACATTGAAGC
64 AGAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
83454776 C-G
129 CAG
* * *
83454778 ATAATTCTATCTCCCTAGTTGGCAGTGGAATAGATTGAAGATTTCATATCTTATCTCCC--A--A
1 -TAATTCTATCTCCCTAGGTAGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
* ** * *
83454839 -AGTGGAGCAGATTGAAGATGGCAGATTTTACCT-CCTGTGACTATAGTGGAGTACATTGAAGTC
65 GAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC
*
83454902 AA
130 AG
* * * *
83454904 TAATTCTATCTCCCTAGTTGGCAGTGGAATAGATTAAAGATTTCAAATCTTATCTCCCTAAGCAG
1 TAATTCTATCTCCCTAGGTAGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA-
* * *
83454969 GAGTGGAGCAGATCGAAAATGGCAGATTTTACCTCCCTGTGGTTATAGTGGGGTACATTGAAGCC
65 GAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC
83455034 AG
130 AG
* * * *
83455036 TAATCCTATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCTTAAGCAG
1 TAATTCTATCTCCCTAGGTAGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAG
*
83455101 TAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC
66 -AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC
83455166 AG
130 AG
* * * *
83455168 TAATTCTATCTCCCTGGGCAGTAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAG
1 TAATTCTATCTCCCTAGGTAGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAG
* * ** *
83455233 TAGTGGAGTAGATCGAAGATGG-TGAATTTTACCTCCCTAAGGTTACAGTGGAGTGCATTGAAGC
66 -AGTGGAGCAGATCGAAGATGGCAG-ATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
83455297 CAG
129 CAG
* * * *
83455300 TAGTTCTATCTCCCTGGGGAGTAGTGGAATAGATTGAAGATTAT-AGATCTTATCTCCCTAAGCA
1 TAATTCTATCTCCCTAGGTAGCAGTGGAATAGATTGAAGATT-TCAGATCTTATCTCCCTAAGCA
*
83455364 GTAGTGGAGTAGATCGAAGATGGC-GAATTTTACC-CCCT-TAAGGTTACAGTGGAGTACATTGA
65 G-AGTGGAGCAGATCGAAGATGGCAG-ATTTTACCTCCCTGT--GGTTACAGTGGAGTACATTGA
83455426 AGCCAG
126 AGCCAG
83455432 TAATTCTATCTCCC
1 TAATTCTATCTCCC
83455446 CGATGTTGCT
Statistics
Matches: 722, Mismatches: 53, Indels: 28
0.90 0.07 0.03
Matches are distributed among these distances:
125 199 0.28
126 85 0.12
127 2 0.00
129 1 0.00
131 37 0.05
132 398 0.55
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.30
Consensus pattern (131 bp):
TAATTCTATCTCCCTAGGTAGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAG
AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
G
Found at i:83455091 original size:44 final size:44
Alignment explanation
Indices: 83455042--83455384 Score: 204
Period size: 44 Copynumber: 7.8 Consensus size: 44
83455032 CCAGTAATCC
* *
83455042 TATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
1 TATCTCCCTAGGCAGTAGTGGAGTAGATTGAAGATTACAGATCT
* * * * ** * *
83455086 TATCTCCTTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGATTT
1 TATCTCCCTAGGCAGTAGTGGAGTAGATTGAAGATTACAGATCT
* * * * * * *
83455130 TACCTCCCTGTGGTTA-CAGTGGAGTACATTGAAGCCAGTA-A-TTC-
1 TATCTCCCT-AGG-CAGTAGTGGAGTAGATTGAAG--ATTACAGATCT
* *
83455174 TATCTCCCTGGGCAGTAGTGGAATAGATTGAAGATTACAGATCT
1 TATCTCCCTAGGCAGTAGTGGAGTAGATTGAAGATTACAGATCT
* * * *
83455218 TATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGT-GA-ATTT
1 TATCTCCCTAGGCAGTAGTGGAGTAGATTGAAGAT--TACAGATCT
* * * * *
83455262 TACCTCCCTAAGGTTA-CAGTGGAGT-GCATTGAAGCCAGT--AGTTC-
1 TATCTCCCT-AGG-CAGTAGTGGAGTAG-ATTGAAG--ATTACAGATCT
* * * *
83455306 TATCTCCCTGGGGAGTAGTGGAATAGATTGAAGATTATAGATCT
1 TATCTCCCTAGGCAGTAGTGGAGTAGATTGAAGATTACAGATCT
* *
83455350 TATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGAT
1 TATCTCCCTAGGCAGTAGTGGAGTAGATTGAAGAT
83455385 GGCGAATTTT
Statistics
Matches: 219, Mismatches: 59, Indels: 42
0.68 0.18 0.13
Matches are distributed among these distances:
41 5 0.02
42 3 0.01
43 39 0.18
44 132 0.60
45 35 0.16
46 3 0.01
47 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.29
Consensus pattern (44 bp):
TATCTCCCTAGGCAGTAGTGGAGTAGATTGAAGATTACAGATCT
Found at i:83456053 original size:19 final size:19
Alignment explanation
Indices: 83456029--83456074 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
83456019 ACAGCCACTG
*
83456029 CCACCGTCGTCGAACCTGC
1 CCACCGCCGTCGAACCTGC
83456048 CCACCGCCGTCGAACCTGC
1 CCACCGCCGTCGAACCTGC
*
83456067 TCACCGCC
1 CCACCGCC
83456075 ATGCCCACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.15, C:0.52, G:0.20, T:0.13
Consensus pattern (19 bp):
CCACCGCCGTCGAACCTGC
Found at i:83456284 original size:18 final size:19
Alignment explanation
Indices: 83456263--83456307 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
83456253 GTGATTTTGC
*
83456263 CTTTTATTTTTC-TATTTT
1 CTTTTATTTTTCATAGTTT
*
83456281 CTTTTACTTTTCATAGTTT
1 CTTTTATTTTTCATAGTTT
83456300 -TTTTATTT
1 CTTTTATTT
83456308 ATTTCGATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 18 0.78
19 5 0.22
ACGTcount: A:0.13, C:0.11, G:0.02, T:0.73
Consensus pattern (19 bp):
CTTTTATTTTTCATAGTTT
Found at i:83457085 original size:3 final size:3
Alignment explanation
Indices: 83457065--83457123 Score: 59
Period size: 3 Copynumber: 20.0 Consensus size: 3
83457055 TTTAGCAATT
* * *
83457065 TTA TTA TT- TTA ATG TTA TTA TCA -TA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
83457111 TTAA TTG TTA TTA
1 TT-A TTA TTA TTA
83457124 GTTTTATTTC
Statistics
Matches: 45, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
2 3 0.07
3 39 0.87
4 3 0.07
ACGTcount: A:0.32, C:0.02, G:0.03, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:83460862 original size:41 final size:41
Alignment explanation
Indices: 83460804--83461015 Score: 334
Period size: 41 Copynumber: 5.1 Consensus size: 41
83460794 CTTAATTTAA
* *
83460804 CAGATTCACCAGCACTTAGCCTGCTAGGCATATAGCCTGATT
1 CAGA-TCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
83460846 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
83460887 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
* * *
83460928 CAGATCACCGGCAGTTAGCCTGCTAGGTTTATAACCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
* * * *
83460969 TAGATCACCGGCACTTAGCCTACTAGGTTTATAACCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
83461010 CAGATC
1 CAGATC
83461016 GCATAAGATA
Statistics
Matches: 161, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
41 157 0.98
42 4 0.02
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (41 bp):
CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
Found at i:83466873 original size:38 final size:38
Alignment explanation
Indices: 83466820--83466915 Score: 111
Period size: 38 Copynumber: 2.5 Consensus size: 38
83466810 TAGCAGTAAT
* * * * *
83466820 CATGCGTAACATGTATTCAGTTGATCACTAGGAATTAA
1 CATGCTTAACATGTATTCAGTTCAACACAAGGAATGAA
* * *
83466858 CATGCTTAACGTGTATTCAGTTCAACACAAGTAGTGAA
1 CATGCTTAACATGTATTCAGTTCAACACAAGGAATGAA
83466896 CATGCTTTAACATGTATTCA
1 CATGC-TTAACATGTATTCA
83466916 ATAAGGTTGT
Statistics
Matches: 48, Mismatches: 9, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
38 35 0.73
39 13 0.27
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (38 bp):
CATGCTTAACATGTATTCAGTTCAACACAAGGAATGAA
Found at i:83467358 original size:13 final size:13
Alignment explanation
Indices: 83467340--83467364 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
83467330 GTGTGAAGGG
83467340 CCGTATGGTCCAC
1 CCGTATGGTCCAC
83467353 CCGTATGGTCCA
1 CCGTATGGTCCA
83467365 TATGCCCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.36, G:0.24, T:0.24
Consensus pattern (13 bp):
CCGTATGGTCCAC
Found at i:83469597 original size:44 final size:43
Alignment explanation
Indices: 83469496--83469599 Score: 104
Period size: 43 Copynumber: 2.4 Consensus size: 43
83469486 AGCTCGTCCA
** *
83469496 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAACATCG
1 ATGCCAACGTCCCAGACAAGGCCTTACATGTAATCAAACATCG
* * * *
83469539 ATGCC-ACTATCCCAGATAAGGCCTTACATGTAAATCCCAA-ATTG
1 ATGCCAAC-GTCCCAGACAAGGCCTTACATGT-AAT-CAAACATCG
83469583 ATGCCAACGTCCCAGAC
1 ATGCCAACGTCCCAGAC
83469600 GTGGTCTTAC
Statistics
Matches: 48, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
42 2 0.04
43 23 0.48
44 18 0.38
45 5 0.10
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACAAGGCCTTACATGTAATCAAACATCG
Found at i:83469609 original size:44 final size:43
Alignment explanation
Indices: 83469496--83469610 Score: 126
Period size: 44 Copynumber: 2.7 Consensus size: 43
83469486 AGCTCGTCCA
83469496 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAACATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAACATCG
* *** * * *
83469539 ATGCC-ACTATCCCAGATAAGGCCTTACATGTAAATCCCAA-ATTG
1 ATGCCAAC-GTCCCAGACGTGGTCTTACATGT-AAT-CAAACATCG
83469583 ATGCCAACGTCCCAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
83469611 CGATAACTGA
Statistics
Matches: 56, Mismatches: 12, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
42 2 0.04
43 23 0.41
44 26 0.46
45 5 0.09
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAACATCG
Found at i:83471327 original size:13 final size:13
Alignment explanation
Indices: 83471309--83471349 Score: 57
Period size: 14 Copynumber: 3.1 Consensus size: 13
83471299 CACGATCGTA
83471309 TGGCCAA-GCCGTG
1 TGGCCAACG-CGTG
83471322 TGGCCAACGCGTG
1 TGGCCAACGCGTG
83471335 TAGGCCAACGCGTG
1 T-GGCCAACGCGTG
83471349 T
1 T
83471350 ACAATTCGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
13 12 0.46
14 14 0.54
ACGTcount: A:0.17, C:0.29, G:0.37, T:0.17
Consensus pattern (13 bp):
TGGCCAACGCGTG
Found at i:83471342 original size:14 final size:14
Alignment explanation
Indices: 83471318--83471350 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
83471308 ATGGCCAAGC
83471318 CGTGT-GGCCAACG
1 CGTGTAGGCCAACG
83471331 CGTGTAGGCCAACG
1 CGTGTAGGCCAACG
83471345 CGTGTA
1 CGTGTA
83471351 CAATTCGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 5 0.26
14 14 0.74
ACGTcount: A:0.18, C:0.27, G:0.36, T:0.18
Consensus pattern (14 bp):
CGTGTAGGCCAACG
Found at i:83474396 original size:168 final size:168
Alignment explanation
Indices: 83474118--83474455 Score: 676
Period size: 168 Copynumber: 2.0 Consensus size: 168
83474108 CCACCTAATT
83474118 TAATTCCACATCGAATAAATCGACTTAATTAAATTATTCCCAAAGTCGTAGAATTTCCTTCTGAT
1 TAATTCCACATCGAATAAATCGACTTAATTAAATTATTCCCAAAGTCGTAGAATTTCCTTCTGAT
83474183 TCAAATGCAGTCCAATCGAGCTTTTGTTAAGCTAGCGGAGGGACCAATCGGACATATACAATTAG
66 TCAAATGCAGTCCAATCGAGCTTTTGTTAAGCTAGCGGAGGGACCAATCGGACATATACAATTAG
83474248 GCTCTAGTGATTGCAATTATGTCCAGAAGCATTGTTTA
131 GCTCTAGTGATTGCAATTATGTCCAGAAGCATTGTTTA
83474286 TAATTCCACATCGAATAAATCGACTTAATTAAATTATTCCCAAAGTCGTAGAATTTCCTTCTGAT
1 TAATTCCACATCGAATAAATCGACTTAATTAAATTATTCCCAAAGTCGTAGAATTTCCTTCTGAT
83474351 TCAAATGCAGTCCAATCGAGCTTTTGTTAAGCTAGCGGAGGGACCAATCGGACATATACAATTAG
66 TCAAATGCAGTCCAATCGAGCTTTTGTTAAGCTAGCGGAGGGACCAATCGGACATATACAATTAG
83474416 GCTCTAGTGATTGCAATTATGTCCAGAAGCATTGTTTA
131 GCTCTAGTGATTGCAATTATGTCCAGAAGCATTGTTTA
83474454 TA
1 TA
83474456 TAATTCGCAA
Statistics
Matches: 170, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
168 170 1.00
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (168 bp):
TAATTCCACATCGAATAAATCGACTTAATTAAATTATTCCCAAAGTCGTAGAATTTCCTTCTGAT
TCAAATGCAGTCCAATCGAGCTTTTGTTAAGCTAGCGGAGGGACCAATCGGACATATACAATTAG
GCTCTAGTGATTGCAATTATGTCCAGAAGCATTGTTTA
Found at i:83476333 original size:15 final size:15
Alignment explanation
Indices: 83476313--83476347 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
83476303 ATGGTAGTAC
*
83476313 AACAAAATAGAATAG
1 AACAAAATAGAAAAG
*
83476328 AACAAAGTAGAAAAG
1 AACAAAATAGAAAAG
83476343 AACAA
1 AACAA
83476348 TAAATGTATG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.69, C:0.09, G:0.14, T:0.09
Consensus pattern (15 bp):
AACAAAATAGAAAAG
Found at i:83476759 original size:41 final size:41
Alignment explanation
Indices: 83476702--83476780 Score: 140
Period size: 41 Copynumber: 1.9 Consensus size: 41
83476692 GCAATAATTA
*
83476702 ATACAATAACAGAATCAATAGGCATGCGAGTTCATGCTATC
1 ATACAATAACAGAATCAATAGGCATGCGAGTCCATGCTATC
*
83476743 ATACAATAACAGAATCAATAGGCATGGGAGTCCATGCT
1 ATACAATAACAGAATCAATAGGCATGCGAGTCCATGCT
83476781 TGGTAAAACA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.23
Consensus pattern (41 bp):
ATACAATAACAGAATCAATAGGCATGCGAGTCCATGCTATC
Found at i:83490271 original size:13 final size:13
Alignment explanation
Indices: 83490253--83490279 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
83490243 CATGGGTAAA
83490253 ATATAGATTTGGT
1 ATATAGATTTGGT
83490266 ATATAGATTTGGT
1 ATATAGATTTGGT
83490279 A
1 A
83490280 AGAAACTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (13 bp):
ATATAGATTTGGT
Found at i:83498084 original size:10 final size:10
Alignment explanation
Indices: 83498069--83498110 Score: 54
Period size: 9 Copynumber: 4.5 Consensus size: 10
83498059 CTAGGAGCAG
83498069 TTTGTTTCAT
1 TTTGTTTCAT
83498079 TTTGTTTC-T
1 TTTGTTTCAT
*
83498088 TTTGTTT-AC
1 TTTGTTTCAT
83498097 TTTG-TTCAT
1 TTTGTTTCAT
83498106 TTTGT
1 TTTGT
83498111 AATGTTACTA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
8 2 0.07
9 17 0.63
10 8 0.30
ACGTcount: A:0.07, C:0.10, G:0.12, T:0.71
Consensus pattern (10 bp):
TTTGTTTCAT
Found at i:83499452 original size:33 final size:33
Alignment explanation
Indices: 83499415--83499481 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
83499405 AGCATTAATC
83499415 TTCCATAGATTTTCAATTAATAGTCAGAGGAAA
1 TTCCATAGATTTTCAATTAATAGTCAGAGGAAA
83499448 TTCCATAGATTTTCAATTAATAGTCAGAGGAAA
1 TTCCATAGATTTTCAATTAATAGTCAGAGGAAA
83499481 T
1 T
83499482 CAAGTGAAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.34
Consensus pattern (33 bp):
TTCCATAGATTTTCAATTAATAGTCAGAGGAAA
Found at i:83499682 original size:60 final size:61
Alignment explanation
Indices: 83499600--83499753 Score: 179
Period size: 60 Copynumber: 2.5 Consensus size: 61
83499590 AAGAAGAAAG
* * *
83499600 AGTTTTTTTTTAACTACGGTTTATAATTTGGGCAAACCAAAAT-ATTAAAATTTGAAAAAA
1 AGTTTTTTTGTAACTACCGTTTATAATTTGGGCAAACCAAAATAATCAAAATTTGAAAAAA
* * * *
83499660 AGTTTTTTTGTAATTACCGTTTATAATTTGGGTAAACTAAAATAATCAAAATTTGAAAAGGA
1 AGTTTTTTTGTAACTACCGTTTATAATTTGGGCAAACCAAAATAATCAAAATTTGAAAA-AA
* *
83499722 A-TTCTTTTT-TAAACTACGGTTTAAAATTTGGG
1 AGTT-TTTTTGT-AACTACCGTTTATAATTTGGG
83499754 ACTAGAAATT
Statistics
Matches: 80, Mismatches: 10, Indels: 6
0.83 0.10 0.06
Matches are distributed among these distances:
60 38 0.47
61 17 0.21
62 25 0.31
ACGTcount: A:0.38, C:0.08, G:0.14, T:0.40
Consensus pattern (61 bp):
AGTTTTTTTGTAACTACCGTTTATAATTTGGGCAAACCAAAATAATCAAAATTTGAAAAAA
Found at i:83511440 original size:79 final size:76
Alignment explanation
Indices: 83511195--83511494 Score: 349
Period size: 79 Copynumber: 3.9 Consensus size: 76
83511185 NNNNNNNNNA
*
83511195 AAAACAGAAATTGAAAATACCTCAGCATGTGAACC-GAGGCTCAACTCACCTCTCGCAATATAAG
1 AAAACAGAAATTGAAAATACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATAAG
83511259 TTGATTTTTTTTTT
63 TTGATTTTTTTTTT
* * * **
83511273 GAAAATAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAAGTT
1 -AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTT
* *
83511338 GA----ATTTTG
65 GATTTTTTTTTT
* * ** * *
83511346 AAAACAGAAATTGAAATTACCTCAGTGTGTCCTGAGGCTCAACTCATTTTTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTG
83511411 ATTTTTTTTTT
66 ATTTTTTTTTT
* * *
83511422 AACAACAGAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAG
1 AA-AACAG--AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATAAG
83511487 TTGATTTT
63 TTGATTTT
83511495 GAAAAACAAA
Statistics
Matches: 191, Mismatches: 22, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
72 59 0.31
73 4 0.02
76 7 0.04
77 39 0.20
79 82 0.43
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (76 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTG
ATTTTTTTTTT
Found at i:83511469 original size:151 final size:150
Alignment explanation
Indices: 83511194--83511512 Score: 414
Period size: 151 Copynumber: 2.1 Consensus size: 150
83511184 NNNNNNNNNN
83511194 AAAAACAGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAG
1 AAAAACAGAAATTGAAAATACCTCAG-ATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAG
* * **
83511259 TTGATTTTTTTTTTGAAAATAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTC
65 TTGATTTTTTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTC
*
83511324 TCGCAATATAAGTTGAATTTTG
130 TAGCAATATAAGTTG-ATTTTG
* * ** * *
83511346 -AAAACAGAAATTGAAATTACCTCAG-TGTG-TCCTGAGGCTCAACTCATTTTTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGATGTGAACC-GAGGCTCAACTCACCTCTCGCAATATAAG
* *
83511408 TTGATTTTTTTTTT-AACAACAGAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCAC
65 TTGATTTTTTTTTTGAA-AACAG--AAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCAC
*
83511472 CTCTAGCAATATGAGTTGATTTTG
127 CTCTAGCAATATAAGTTGATTTTG
*
83511496 AAAAACAAAAATT-AAAA
1 AAAAACAGAAATTGAAAA
83511513 GGCTTAACTC
Statistics
Matches: 146, Mismatches: 16, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
148 4 0.03
149 47 0.32
150 9 0.06
151 86 0.59
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (150 bp):
AAAAACAGAAATTGAAAATACCTCAGATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGT
TGATTTTTTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCT
AGCAATATAAGTTGATTTTG
Found at i:83511635 original size:14 final size:14
Alignment explanation
Indices: 83511616--83511665 Score: 66
Period size: 14 Copynumber: 3.6 Consensus size: 14
83511606 GAGTTGATTT
*
83511616 TTGAAAAATATAAA
1 TTGAAAAATAGAAA
83511630 TTGAAAAAATAGAAA
1 TTG-AAAAATAGAAA
*
83511645 TTGAAAAGTAGAAA
1 TTGAAAAATAGAAA
83511659 TT-AAAAA
1 TTGAAAAA
83511666 GACCTCAGCA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
13 4 0.12
14 15 0.47
15 13 0.41
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (14 bp):
TTGAAAAATAGAAA
Found at i:83511832 original size:164 final size:164
Alignment explanation
Indices: 83511634--83512050 Score: 665
Period size: 164 Copynumber: 2.5 Consensus size: 164
83511624 TATAAATTGA
* * *
83511634 AAAAATAGAAATTGAAAAGTAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACC
1 AAAAACAGAAATTGAAAA-TAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACC
*
83511699 TCTCGCCATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTC
65 TCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTC
* *
83511764 AACTCAGCTTTCGCAATATGAGTTGA-TTTTTTTG
130 AACTCACCTCTCGCAATATGAGTTGATTTTTTTTG
*
83511798 AAAAACAGAAATTGAAGAATAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCAGC
1 AAAAACAGAAATTGAA-AATAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACC
83511863 TCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTC
65 TCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTC
*
83511928 AACTCACCTCTCGCAATATGAGTTGATTTTTTTTT
130 AACTCACCTCTCGCAATATGAGTTGATTTTTTTTG
** * * * *
83511963 ACGAGCAGAAATTGAAAAACAGAAATTGAAAAGACCTCGGCATGTGAGCCGAGGCTCAACTCACT
1 AAAAACAGAAATTG-AAAATAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACC
*
83512028 TCTCGCAATATGAGTTGATTTTT
65 TCTCGCAATATGAGTTAATTTTT
83512051 TTTTACGAGC
Statistics
Matches: 234, Mismatches: 16, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
164 146 0.62
165 86 0.37
166 2 0.01
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.27
Consensus pattern (164 bp):
AAAAACAGAAATTGAAAATAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCT
CTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCA
ACTCACCTCTCGCAATATGAGTTGATTTTTTTTG
Found at i:83511895 original size:89 final size:89
Alignment explanation
Indices: 83511729--83511902 Score: 253
Period size: 89 Copynumber: 2.0 Consensus size: 89
83511719 TTTGACAAAC
** * * *
83511729 AGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCAGCTTTCGCAATATGAGTTGATTTT
1 AGAAATTGAAAAGACCTCAGCGTGACCCGAGGCTCAACTCAGCTCTCGCAATATGAGTTGATATT
83511794 TTTGAAAAACAGAAATTGAAGAAT
66 TTTGAAAAACAGAAATTGAAGAAT
*
83511818 AGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCAGCTCTCGCAATATGAGTT-A-A
1 AGAAATTGAAAAGACCTCAGC--GTGACCCGAGGCTCAACTCAGCTCTCGCAATATGAGTTGATA
*
83511881 TTTTTGACAAACAGAAATTGAA
64 TTTTTGAAAAACAGAAATTGAA
83511903 ATTACCTCAG
Statistics
Matches: 76, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
89 40 0.53
90 1 0.01
91 35 0.46
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (89 bp):
AGAAATTGAAAAGACCTCAGCGTGACCCGAGGCTCAACTCAGCTCTCGCAATATGAGTTGATATT
TTTGAAAAACAGAAATTGAAGAAT
Found at i:83511939 original size:73 final size:74
Alignment explanation
Indices: 83511818--83511958 Score: 212
Period size: 73 Copynumber: 1.9 Consensus size: 74
83511808 ATTGAAGAAT
* *
83511818 AGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCAGCTCTCGCAATATGAGTTAATT
1 AGAAATTGAAAAGACCTCAGCA-GTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATT
83511883 TTTGACAAAC
65 TTTGACAAAC
** * *
83511893 AGAAATTGAAATTACCTCAGC-GTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AGAAATTGAAAAGACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTT
83511957 TT
66 TT
83511959 TTTTACGAGC
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
73 41 0.68
75 19 0.32
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (74 bp):
AGAAATTGAAAAGACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTT
TTGACAAAC
Found at i:83511987 original size:14 final size:14
Alignment explanation
Indices: 83511968--83511994 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
83511958 TTTTTACGAG
83511968 CAGAAATTGAAAAA
1 CAGAAATTGAAAAA
83511982 CAGAAATTGAAAA
1 CAGAAATTGAAAA
83511995 GACCTCGGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.07, G:0.15, T:0.15
Consensus pattern (14 bp):
CAGAAATTGAAAAA
Found at i:83512075 original size:90 final size:89
Alignment explanation
Indices: 83511884--83512093 Score: 323
Period size: 92 Copynumber: 2.3 Consensus size: 89
83511874 GAGTTAATTT
** *
83511884 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGA-AAACAGAAATTGAAAAGACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
83511949 GTTGATTTTTTTTTACGAGCAGAAA
65 GTTGATTTTTTTTTACGAGCAGAAA
* * *
83511974 TTGAAAAACAGAAATTGAAAAGACCTCGGCATGTGAGCCGAGGCTCAACTCACTTCTCGCAATAT
1 TTG-AAAACAGAAATTGAAAAGACCTCAGC--GTGACCCGAGGCTCAACTCACCTCTCGCAATAT
83512039 GAGTTGATTTTTTTTTACGAGCAGAAA
63 GAGTTGATTTTTTTTTACGAGCAGAAA
83512066 TTG-AAACAGAAATTGAAAAGACCTCAGC
1 TTGAAAACAGAAATTGAAAAGACCTCAGC
83512094 ANNNNNNNNN
Statistics
Matches: 110, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
90 49 0.45
91 1 0.01
92 60 0.55
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (89 bp):
TTGAAAACAGAAATTGAAAAGACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTTTTACGAGCAGAAA
Found at i:83520136 original size:29 final size:29
Alignment explanation
Indices: 83520104--83520249 Score: 292
Period size: 29 Copynumber: 5.0 Consensus size: 29
83520094 GCGTTCATTG
83520104 CTTTGATTCTCGACCTTCTCTTCAGGCCT
1 CTTTGATTCTCGACCTTCTCTTCAGGCCT
83520133 CTTTGATTCTCGACCTTCTCTTCAGGCCT
1 CTTTGATTCTCGACCTTCTCTTCAGGCCT
83520162 CTTTGATTCTCGACCTTCTCTTCAGGCCT
1 CTTTGATTCTCGACCTTCTCTTCAGGCCT
83520191 CTTTGATTCTCGACCTTCTCTTCAGGCCT
1 CTTTGATTCTCGACCTTCTCTTCAGGCCT
83520220 CTTTGATTCTCGACCTTCTCTTCAGGCCT
1 CTTTGATTCTCGACCTTCTCTTCAGGCCT
83520249 C
1 C
83520250 ATACCTGTCT
Statistics
Matches: 117, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 117 1.00
ACGTcount: A:0.10, C:0.35, G:0.14, T:0.41
Consensus pattern (29 bp):
CTTTGATTCTCGACCTTCTCTTCAGGCCT
Found at i:83528260 original size:12 final size:12
Alignment explanation
Indices: 83528240--83528275 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
83528230 TGGGATATGC
*
83528240 AATGTATGAATG
1 AATGCATGAATG
83528252 AATGCATGAATG
1 AATGCATGAATG
83528264 AATGCATGAATG
1 AATGCATGAATG
83528276 TCAAAATGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:83533844 original size:234 final size:235
Alignment explanation
Indices: 83533430--83533900 Score: 872
Period size: 234 Copynumber: 2.0 Consensus size: 235
83533420 TCTCCTGAAC
83533430 TCTTCGCAGGATTGAATATCGTGCCCCTCAATACTATGGAATTCACAAAAACTTGGATATTTTGT
1 TCTTCGCAGGATTGAATATCGTGCCCCTCAATACTATGGAATTCACAAAAACTTGGATATTTTGT
*
83533495 ATTCCTTCCCTCGAATACTCTGTAAAGTTGACAAAGCGAACCCTTTTCAACTAGCACCTCCCAGA
66 ATTCCTTCCCTCGAATACTCTGTAAAGATGACAAAGCGAACCCTTTTCAACTAGCACCTCCCAGA
83533560 TTTTCTGTAGAGGTGTTCTTATTTCAGAAACCCGTCTTCTACTTTGTCGTTTGTCCTCCTTTCCT
131 TTTTCTGTAGAGGTGTTCTTATTTCAGAAACCCGTCTTCTACTTTGTCGTTTGTCCTCCTTTCCT
83533625 ACTGCGCTCACATTCCTTTCGGCGTGGTTTGGGAATGGGT
196 ACTGCGCTCACATTCCTTTCGGCGTGGTTTGGGAATGGGT
* ** *
83533665 TCTT-GCAGGATTGAATATCGTGTCCCTCAATACTATGGAATTCGTAAAAACTTGGATCTTTTGT
1 TCTTCGCAGGATTGAATATCGTGCCCCTCAATACTATGGAATTCACAAAAACTTGGATATTTTGT
*
83533729 ATTCCTTCCCTCGAATACTCTGTTAAGATGACAAAGCGAACCCTTTTCAACTAGCACCTCCCAGA
66 ATTCCTTCCCTCGAATACTCTGTAAAGATGACAAAGCGAACCCTTTTCAACTAGCACCTCCCAGA
83533794 TTTTCTGTAGAGGTGTTCTTATTTCAGAAACCCGTCTTCTACTTTGTCGTTTGTCCTCCTTTCCT
131 TTTTCTGTAGAGGTGTTCTTATTTCAGAAACCCGTCTTCTACTTTGTCGTTTGTCCTCCTTTCCT
*
83533859 ACTGCGCTCACATTTCTTTCGGCGTGGTTTGGGAATGGGT
196 ACTGCGCTCACATTCCTTTCGGCGTGGTTTGGGAATGGGT
83533899 TC
1 TC
83533901 CCGGATGTAC
Statistics
Matches: 229, Mismatches: 7, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
234 225 0.98
235 4 0.02
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (235 bp):
TCTTCGCAGGATTGAATATCGTGCCCCTCAATACTATGGAATTCACAAAAACTTGGATATTTTGT
ATTCCTTCCCTCGAATACTCTGTAAAGATGACAAAGCGAACCCTTTTCAACTAGCACCTCCCAGA
TTTTCTGTAGAGGTGTTCTTATTTCAGAAACCCGTCTTCTACTTTGTCGTTTGTCCTCCTTTCCT
ACTGCGCTCACATTCCTTTCGGCGTGGTTTGGGAATGGGT
Found at i:83536556 original size:24 final size:24
Alignment explanation
Indices: 83536529--83536584 Score: 78
Period size: 24 Copynumber: 2.3 Consensus size: 24
83536519 TAATGATGTG
83536529 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-TAAAATATTAA
* *
83536553 AATATTAAAATATTAAAATATTAG
1 AATAATAAAATATTAAAATATTAA
83536577 AATAATAA
1 AATAATAA
83536585 TAATTAATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 7 0.25
24 21 0.75
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (24 bp):
AATAATAAAATATTAAAATATTAA
Found at i:83536563 original size:8 final size:8
Alignment explanation
Indices: 83536529--83536580 Score: 70
Period size: 8 Copynumber: 6.5 Consensus size: 8
83536519 TAATGATGTG
*
83536529 AATAATAA
1 AATATTAA
83536537 AATATATAA
1 AATAT-TAA
83536546 AATA-TAA
1 AATATTAA
83536553 AATATTAA
1 AATATTAA
83536561 AATATTAA
1 AATATTAA
*
83536569 AATATTAG
1 AATATTAA
83536577 AATA
1 AATA
83536581 ATAATAATTA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
7 7 0.17
8 26 0.65
9 7 0.17
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (8 bp):
AATATTAA
Found at i:83536797 original size:22 final size:24
Alignment explanation
Indices: 83536734--83536798 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
83536724 CGTGATAATA
*
83536734 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
83536759 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
83536782 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
83536799 GATAACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:83536825 original size:32 final size:31
Alignment explanation
Indices: 83536787--83536859 Score: 85
Period size: 32 Copynumber: 2.4 Consensus size: 31
83536777 TATAGTTAAG
*
83536787 ATATATACATAAGATAACATGTAAAAATATAT
1 ATATATAAATAAGATAACAT-TAAAAATATAT
* * *
83536819 ATATATAAATAATATAATATTAAAGATATAT
1 ATATATAAATAAGATAACATTAAAAATATAT
*
83536850 ACATA-AAATA
1 ATATATAAATA
83536860 GTATAAAATA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
30 5 0.14
31 14 0.39
32 17 0.47
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.33
Consensus pattern (31 bp):
ATATATAAATAAGATAACATTAAAAATATAT
Found at i:83536842 original size:15 final size:16
Alignment explanation
Indices: 83536808--83536850 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
83536798 AGATAACATG
83536808 TAAAAATATATATATA
1 TAAAAATATATATATA
83536824 TAAATAATATA-ATAT-
1 TAAA-AATATATATATA
*
83536839 TAAAGATATATA
1 TAAAAATATATA
83536851 CATAAAATAG
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
14 5 0.21
15 5 0.21
16 8 0.33
17 6 0.25
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.37
Consensus pattern (16 bp):
TAAAAATATATATATA
Found at i:83536855 original size:25 final size:25
Alignment explanation
Indices: 83536819--83536950 Score: 98
Period size: 25 Copynumber: 5.6 Consensus size: 25
83536809 AAAAATATAT
*
83536819 ATATATAAATAATATAATATTAAAG
1 ATATATACATAATATAATATTAAAG
* * * *
83536844 ATATATACATAAAATAGTATAAAAT
1 ATATATACATAATATAATATTAAAG
* * *
83536869 ATATATACGTAATATAAAATTTAA-
1 ATATATACATAATATAATATTAAAG
* *
83536893 A-ATATACCTAATAT-AT-TAAAAG
1 ATATATACATAATATAATATTAAAG
* *
83536915 A-ATATATATACTATAATATT-AAG
1 ATATATACATAATATAATATTAAAG
*
83536938 AAATATA-ATAATA
1 ATATATACATAATA
83536951 ACAAAAAAAA
Statistics
Matches: 83, Mismatches: 20, Indels: 10
0.73 0.18 0.09
Matches are distributed among these distances:
21 3 0.04
22 12 0.14
23 23 0.28
24 7 0.08
25 38 0.46
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATATACATAATATAATATTAAAG
Found at i:83536932 original size:50 final size:50
Alignment explanation
Indices: 83536817--83536933 Score: 130
Period size: 50 Copynumber: 2.3 Consensus size: 50
83536807 GTAAAAATAT
* * *
83536817 ATATATATAAATAATATAATATTAAAGATATATACATAAAATAGTATAAA
1 ATATATATACATAATATAAAATTAAAGATATATACATAAAATAGTAAAAA
* * * * *
83536867 ATATATATACGTAATATAAAATTTAA-A-ATATACCTAATATATTAAAAGA
1 ATATATATACATAATATAAAATTAAAGATATATACATAAAATAGTAAAA-A
83536916 ATATATATACTATAATAT
1 ATATATATAC-ATAATAT
83536934 TAAGAAATAT
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
48 16 0.29
49 12 0.21
50 28 0.50
ACGTcount: A:0.56, C:0.04, G:0.03, T:0.36
Consensus pattern (50 bp):
ATATATATACATAATATAAAATTAAAGATATATACATAAAATAGTAAAAA
Found at i:83540903 original size:223 final size:223
Alignment explanation
Indices: 83540515--83540961 Score: 885
Period size: 223 Copynumber: 2.0 Consensus size: 223
83540505 AGTAGACATC
83540515 TATCAGACTAGATTGGGAAAGCATATAACACCGTGGTATTTAGATTATGTCAATTATATTGTGAG
1 TATCAGACTAGATTGGGAAAGCATATAACACCGTGGTATTTAGATTATGTCAATTATATTGTGAG
83540580 AGGGGTCTTTCTTGTACAGGTATCCTGGCAAAAGAAAAAGAGGATAGCCCACGAATCAAAAAAAT
66 AGGGGTCTTTCTTGTACAGGTATCCTGGCAAAAGAAAAAGAGGATAGCCCACGAATCAAAAAAAT
83540645 TATGTTTGGGAGGAACCGTACGTGTTTCAATAATGTGCAGATCAATTGATCTAAAGGTGTGTAGT
131 TATGTTTGGGAGGAACCGTACGTGTTTCAATAATGTGCAGATCAATTGATCTAAAGGTGTGTAGT
83540710 GGAGGAAGAGATAATATGAAATTTTACA
196 GGAGGAAGAGATAATATGAAATTTTACA
83540738 TATCAGACTAGATTGGGAAAGCATATAACACCGTGGTATTTAGATTATGTCAATTATATTGTGAG
1 TATCAGACTAGATTGGGAAAGCATATAACACCGTGGTATTTAGATTATGTCAATTATATTGTGAG
83540803 AGGGGTCTTTCTTGTACAGGTATCCTGGCAAAAGAAAAAGAGGATAGCCCACGAATCAAAAAAAT
66 AGGGGTCTTTCTTGTACAGGTATCCTGGCAAAAGAAAAAGAGGATAGCCCACGAATCAAAAAAAT
83540868 TATGTTTGGGAGGAACCGTACGTGTTTCAATAATGTGCAGATCAATTGATCTAAAGGTGTGTAGT
131 TATGTTTGGGAGGAACCGTACGTGTTTCAATAATGTGCAGATCAATTGATCTAAAGGTGTGTAGT
*
83540933 GGAGGTAGAGATAATATGAAATTTTACA
196 GGAGGAAGAGATAATATGAAATTTTACA
83540961 T
1 T
83540962 GGATGCCATA
Statistics
Matches: 223, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
223 223 1.00
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.29
Consensus pattern (223 bp):
TATCAGACTAGATTGGGAAAGCATATAACACCGTGGTATTTAGATTATGTCAATTATATTGTGAG
AGGGGTCTTTCTTGTACAGGTATCCTGGCAAAAGAAAAAGAGGATAGCCCACGAATCAAAAAAAT
TATGTTTGGGAGGAACCGTACGTGTTTCAATAATGTGCAGATCAATTGATCTAAAGGTGTGTAGT
GGAGGAAGAGATAATATGAAATTTTACA
Found at i:83541352 original size:19 final size:19
Alignment explanation
Indices: 83541328--83541367 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
83541318 ATTTGCTAGG
*
83541328 TTTGGTACACCATGTGAAT
1 TTTGGTACACCACGTGAAT
83541347 TTTGGTACACCACGTGAAT
1 TTTGGTACACCACGTGAAT
83541366 TT
1 TT
83541368 GCCAGTGACG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (19 bp):
TTTGGTACACCACGTGAAT
Found at i:83545722 original size:21 final size:20
Alignment explanation
Indices: 83545675--83545727 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 20
83545665 CTAAATGAAC
*
83545675 AAATTCAATTCAATTCAATA
1 AAATTCTATTCAATTCAATA
*
83545695 ATTATTCTATTCAATTCAATCA
1 A-AATTCTATTCAATTCAAT-A
83545717 AAATTCATATT
1 AAATTC-TATT
83545728 TTATCAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 1 0.04
21 20 0.74
22 6 0.22
ACGTcount: A:0.43, C:0.15, G:0.00, T:0.42
Consensus pattern (20 bp):
AAATTCTATTCAATTCAATA
Found at i:83546432 original size:238 final size:238
Alignment explanation
Indices: 83545999--83546478 Score: 766
Period size: 238 Copynumber: 2.0 Consensus size: 238
83545989 TGGCAAAACC
*
83545999 CTAACCTTTTAACAGGTTTGCAAATTAGTCCCCAAGCTAGCTAGATTAAGCTACAACGATTCTAA
1 CTAACCTTTTAACAGGTTTGCAAATTAGTCCCCAAGCTAGCTAGATTAAGCTACAACGATCCTAA
* * *
83546064 AAACATAGAAATCATTAAAACCAGGACAAAAAATACTCACATGCAAGCAAAATAAGGATGGTCGA
66 AAACATAGAAATCATTAAAAACAGGACAAAAAATACTCACATGCAAGCAAAATAAGGATGGCCAA
* * *
83546129 ATGTTGAAGCTTTTTAGTTTCTTTTCCTTCAACTTTCGGTGGTGTTTAACAAATTAAAAAAGATG
131 ATGTTCAAGCTTTATAGTTTCTTTTCCTTCAACTTTCGATGGTGTTTAACAAATTAAAAAAGATG
83546194 ATACATTATTTATTTTATTTTAATTCACTTATTAACTAATTTA
196 ATACATTATTTATTTTATTTTAATTCACTTATTAACTAATTTA
* *
83546237 CTAA-CTTATTAACAGGTTTGCAAATTAGTCCCCGAGCTTGCTAGATTAAGCTACAACGATCCT-
1 CTAACCTT-TTAACAGGTTTGCAAATTAGTCCCCAAGCTAGCTAGATTAAGCTACAACGATCCTA
* **
83546300 AAAACATAGAAATCATTAAAAATAGGATGAAAAATACTCACATGCAAGCAAAATAAGGATGGCCA
65 AAAACATAGAAATCATTAAAAACAGGACAAAAAATACTCACATGCAAGCAAAATAAGGATGGCCA
* * * *
83546365 AATGTTCAAGCTTCTATGGTTTCTTTTCGTTCAATTTTCGATGGTGTTTAACAAATTAAAGAAGA
130 AATGTTCAAGCTT-TATAGTTTCTTTTCCTTCAACTTTCGATGGTGTTTAACAAATTAAAAAAGA
* *
83546430 TGATACATTATTTCTTTTGTTTTAATTCACTTATTAACTAATTTA
194 TGATACATTATTTATTTTATTTTAATTCACTTATTAACTAATTTA
83546475 CTAA
1 CTAA
83546479 TTTAACCTTA
Statistics
Matches: 222, Mismatches: 18, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
237 74 0.33
238 148 0.67
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.34
Consensus pattern (238 bp):
CTAACCTTTTAACAGGTTTGCAAATTAGTCCCCAAGCTAGCTAGATTAAGCTACAACGATCCTAA
AAACATAGAAATCATTAAAAACAGGACAAAAAATACTCACATGCAAGCAAAATAAGGATGGCCAA
ATGTTCAAGCTTTATAGTTTCTTTTCCTTCAACTTTCGATGGTGTTTAACAAATTAAAAAAGATG
ATACATTATTTATTTTATTTTAATTCACTTATTAACTAATTTA
Found at i:83548296 original size:14 final size:15
Alignment explanation
Indices: 83548279--83548307 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
83548269 AAAGGAAGAT
83548279 CTTG-AAACCTTAGG
1 CTTGAAAACCTTAGG
83548293 CTTGAAAACCTTAGG
1 CTTGAAAACCTTAGG
83548308 AAGTCATCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 4 0.29
15 10 0.71
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28
Consensus pattern (15 bp):
CTTGAAAACCTTAGG
Found at i:83553646 original size:12 final size:12
Alignment explanation
Indices: 83553629--83553682 Score: 54
Period size: 12 Copynumber: 4.2 Consensus size: 12
83553619 TTAGTCAAAG
83553629 ATATGTATATAT
1 ATATGTATATAT
*
83553641 ATATGTATGTAT
1 ATATGTATATAT
**
83553653 AATACTCAAATATAT
1 -ATA-T-GTATATAT
83553668 ATATGTATATAT
1 ATATGTATATAT
83553680 ATA
1 ATA
83553683 AGTTTTGAGT
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
12 20 0.61
13 4 0.12
14 4 0.12
15 5 0.15
ACGTcount: A:0.44, C:0.04, G:0.07, T:0.44
Consensus pattern (12 bp):
ATATGTATATAT
Found at i:83553993 original size:41 final size:41
Alignment explanation
Indices: 83553926--83554034 Score: 128
Period size: 41 Copynumber: 2.7 Consensus size: 41
83553916 CGATCGAATG
* * * *
83553926 TAATGCAGACTTTACATCTAGTAGGCTTGATGCCGATGAAA
1 TAATTCAGACTTTACGTCTAGCAGGCTTAATGCCGATGAAA
* *
83553967 TAATTCAGACTTTACGTCTAGCAGGCTTAATGCCGGTGATA
1 TAATTCAGACTTTACGTCTAGCAGGCTTAATGCCGATGAAA
* * * *
83554008 CATTTCAGACTATAGGTCTAGCAGGCT
1 TAATTCAGACTTTACGTCTAGCAGGCT
83554035 AAAGGCCAGT
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 58 1.00
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.30
Consensus pattern (41 bp):
TAATTCAGACTTTACGTCTAGCAGGCTTAATGCCGATGAAA
Found at i:83557370 original size:22 final size:22
Alignment explanation
Indices: 83557342--83557385 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
83557332 TATCAGTGTT
*
83557342 AGGAAGATTATTCTTTAGGAGA
1 AGGAAGATTATTCTTAAGGAGA
83557364 AGGAAGATTATTCTTAAGGAGA
1 AGGAAGATTATTCTTAAGGAGA
83557386 TCCATGATTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.39, C:0.05, G:0.27, T:0.30
Consensus pattern (22 bp):
AGGAAGATTATTCTTAAGGAGA
Found at i:83571072 original size:56 final size:51
Alignment explanation
Indices: 83571011--83571246 Score: 244
Period size: 50 Copynumber: 4.6 Consensus size: 51
83571001 TGTGAGCCAG
** *
83571011 TGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAAATTATGAGAGGTCCCA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCA--ACCG--A-GATGAGAGGTCCCA
* * * *
83571067 TGTAAGACCATGTTTGGGACATGACGTTGGC-ACCGAGATGAGAGGTCTCA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCAACCGAGATGAGAGGTCCCA
*
83571117 TGTAAGACCATGTCTGGGACATGGCATTGGC-ACCGAGATGAGAGGTCCCC
1 TGTAAGACCATGTCTGGGACATGGCATTGGCAACCGAGATGAGAGGTCCCA
* * * * * ** *
83571167 CGTAAGACCATGTCTGGGACAGGGCATGGGC-ATCGATATGAGAACTCTCA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCAACCGAGATGAGAGGTCCCA
* *
83571217 TGTAAGACCATATCTGGGATATGGCATTGG
1 TGTAAGACCATGTCTGGGACATGGCATTGG
83571247 TAGTACAAGA
Statistics
Matches: 154, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
50 123 0.80
51 1 0.01
53 2 0.01
56 28 0.18
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (51 bp):
TGTAAGACCATGTCTGGGACATGGCATTGGCAACCGAGATGAGAGGTCCCA
Found at i:83571208 original size:100 final size:102
Alignment explanation
Indices: 83570965--83571246 Score: 295
Period size: 100 Copynumber: 2.8 Consensus size: 102
83570955 CGATCTCGTA
* * * *
83570965 TAAGAACATGTCTAGGACATGGCATCGACATCGATATGTGAG-C-CAGTGTAAGACCATGTCTGG
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGATATGAGAGTCTCA-TGTAAGACCATGTCTGG
** * *
83571028 GACATGGCATTGGCATTATTGAAATTATGAGAGGTCCCATG
65 GACATGGCATTGGC--TACCG-AATGATGAGAGGTCCCACG
* * * * * *
83571069 TAAGACCATGTTTGGGACATGACGTTGGCACCGAGATGAGAGGTCTCATGTAAGACCATGTCTGG
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGATATGAGA-GTCTCATGTAAGACCATGTCTGG
*
83571134 GACATGGCATTGGC-ACCG-A-GATGAGAGGTCCCCCG
65 GACATGGCATTGGCTACCGAATGATGAGAGGTCCCACG
* * * *
83571169 TAAGACCATGTCTGGGACAGGGCATGGGCATCGATATGAGAACTCTCATGTAAGACCATATCTGG
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGATATGAG-AGTCTCATGTAAGACCATGTCTGG
*
83571234 GATATGGCATTGG
65 GACATGGCATTGG
83571247 TAGTACAAGA
Statistics
Matches: 149, Mismatches: 25, Indels: 12
0.80 0.13 0.06
Matches are distributed among these distances:
100 79 0.53
101 2 0.01
103 2 0.01
104 31 0.21
105 1 0.01
106 32 0.21
107 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (102 bp):
TAAGACCATGTCTGGGACATGGCATCGGCATCGATATGAGAGTCTCATGTAAGACCATGTCTGGG
ACATGGCATTGGCTACCGAATGATGAGAGGTCCCACG
Found at i:83575492 original size:25 final size:26
Alignment explanation
Indices: 83575464--83575525 Score: 81
Period size: 29 Copynumber: 2.3 Consensus size: 26
83575454 GCTTTAACAT
83575464 AAATAAA-GAATGAATTCTTTTGAGA
1 AAATAAATGAATGAATTCTTTTGAGA
*
83575489 AAATTAATTATTAATGAATTCTTTTGAGA
1 AAA-TAA--ATGAATGAATTCTTTTGAGA
83575518 AAATAAAT
1 AAATAAAT
83575526 TCTTATTATT
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
25 3 0.09
26 5 0.16
28 4 0.12
29 20 0.62
ACGTcount: A:0.48, C:0.03, G:0.11, T:0.37
Consensus pattern (26 bp):
AAATAAATGAATGAATTCTTTTGAGA
Found at i:83581300 original size:9 final size:9
Alignment explanation
Indices: 83581288--83581312 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
83581278 TAAAATTTTA
83581288 AAAAATTAC
1 AAAAATTAC
83581297 AAAAATTAC
1 AAAAATTAC
83581306 AAAAATT
1 AAAAATT
83581313 CTTTAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (9 bp):
AAAAATTAC
Found at i:83581345 original size:18 final size:18
Alignment explanation
Indices: 83581273--83581345 Score: 53
Period size: 18 Copynumber: 4.1 Consensus size: 18
83581263 ATAATTAATT
*
83581273 AATT-TTAAAATTTTAAAA
1 AATTATTAAAATTAT-AAA
** *
83581291 AATTACAAAAATTACAAA
1 AATTATTAAAATTATAAA
* *
83581309 AATTCTTTAAAA--ATTAA
1 AATT-ATTAAAATTATAAA
83581326 AATTATTAAAATTATAAA
1 AATTATTAAAATTATAAA
83581344 AA
1 AA
83581346 AAGTATTTTT
Statistics
Matches: 40, Mismatches: 11, Indels: 8
0.68 0.19 0.14
Matches are distributed among these distances:
16 6 0.15
17 7 0.17
18 17 0.43
19 10 0.25
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (18 bp):
AATTATTAAAATTATAAA
Found at i:83586859 original size:38 final size:38
Alignment explanation
Indices: 83586817--83586956 Score: 280
Period size: 38 Copynumber: 3.7 Consensus size: 38
83586807 TAATTCGTTC
83586817 TTCCGCTGTTCTTCATGGAAACTTTATTCCCTTAAAGT
1 TTCCGCTGTTCTTCATGGAAACTTTATTCCCTTAAAGT
83586855 TTCCGCTGTTCTTCATGGAAACTTTATTCCCTTAAAGT
1 TTCCGCTGTTCTTCATGGAAACTTTATTCCCTTAAAGT
83586893 TTCCGCTGTTCTTCATGGAAACTTTATTCCCTTAAAGT
1 TTCCGCTGTTCTTCATGGAAACTTTATTCCCTTAAAGT
83586931 TTCCGCTGTTCTTCATGGAAACTTTA
1 TTCCGCTGTTCTTCATGGAAACTTTA
83586957 AGGGAATTCT
Statistics
Matches: 102, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 102 1.00
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.42
Consensus pattern (38 bp):
TTCCGCTGTTCTTCATGGAAACTTTATTCCCTTAAAGT
Found at i:83587023 original size:48 final size:48
Alignment explanation
Indices: 83586967--83587060 Score: 129
Period size: 48 Copynumber: 2.0 Consensus size: 48
83586957 AGGGAATTCT
* *
83586967 GTTGAATCCTTTATTGTTGCGAA-TT-GAGCTAACTTAGGCGTTTTTACG
1 GTTGAATCCATTATTGGTG-GAAGTTAG-GCTAACTTAGGCGTTTTTACG
*
83587015 GTTGAATCCATTATTGGTGGAAGTTAGGCTGACTTAGGCGTTTTTA
1 GTTGAATCCATTATTGGTGGAAGTTAGGCTAACTTAGGCGTTTTTA
83587061 AGCCAAGAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
47 3 0.07
48 37 0.90
49 1 0.02
ACGTcount: A:0.21, C:0.13, G:0.26, T:0.40
Consensus pattern (48 bp):
GTTGAATCCATTATTGGTGGAAGTTAGGCTAACTTAGGCGTTTTTACG
Found at i:83589273 original size:48 final size:48
Alignment explanation
Indices: 83589201--83589294 Score: 145
Period size: 48 Copynumber: 2.0 Consensus size: 48
83589191 GGGAATTTCT
* *
83589201 GTTGAATCCTTTATTGTTGCAAGTT-GAGCTGACTTAGGCGTTTTTACG
1 GTTGAATCCTTTATCGGTGCAAGTTAG-GCTGACTTAGGCGTTTTTACG
*
83589249 GTTGAATCCTTTATCGGTGGAAGTTAGGCTGACTTAGGCGTTTTTA
1 GTTGAATCCTTTATCGGTGCAAGTTAGGCTGACTTAGGCGTTTTTA
83589295 AGCCAAGAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
48 41 0.98
49 1 0.02
ACGTcount: A:0.19, C:0.14, G:0.27, T:0.40
Consensus pattern (48 bp):
GTTGAATCCTTTATCGGTGCAAGTTAGGCTGACTTAGGCGTTTTTACG
Found at i:83590688 original size:27 final size:27
Alignment explanation
Indices: 83590648--83590925 Score: 289
Period size: 27 Copynumber: 10.3 Consensus size: 27
83590638 GATTTGTGGG
* * *
83590648 AAAATGACTAAAATACCCTTGAAGGAT
1 AAAATGACTGAAATACCCTCGAAGGGT
*
83590675 AAAATGACTGAAATACCCTCGAGGGGT
1 AAAATGACTGAAATACCCTCGAAGGGT
*
83590702 AAAATGACTGAAATACCCTTGAAGGGT
1 AAAATGACTGAAATACCCTCGAAGGGT
*
83590729 AAAATGACTGAAATACCCTCGAAAGGT
1 AAAATGACTGAAATACCCTCGAAGGGT
* * *
83590756 AAAAT-AATCAAAATACCCCCGAAGGGT
1 AAAATGACT-GAAATACCCTCGAAGGGT
* *
83590783 AAAATGACTGAAATA-ACTCTGTAGGGT
1 AAAATGACTGAAATACCCTC-GAAGGGT
* *
83590810 AAAATGACTAAAATACCC-CCATAGGGT
1 AAAATGACTGAAATACCCTCGA-AGGGT
* * *
83590837 AAAATGA-TCAAAATACCCCCAAAGGGT
1 AAAATGACT-GAAATACCCTCGAAGGGT
*
83590864 AAAATGA-TCGAAATACCC-CTAAAGGGT
1 AAAATGACT-GAAATACCCTC-GAAGGGT
* *
83590891 AAAATGGCTGAAATACCCCCGAAGGGT
1 AAAATGACTGAAATACCCTCGAAGGGT
83590918 AAAATGAC
1 AAAATGAC
83590926 CTCGTAGGGT
Statistics
Matches: 215, Mismatches: 26, Indels: 20
0.82 0.10 0.08
Matches are distributed among these distances:
26 6 0.03
27 202 0.94
28 7 0.03
ACGTcount: A:0.44, C:0.18, G:0.19, T:0.19
Consensus pattern (27 bp):
AAAATGACTGAAATACCCTCGAAGGGT
Found at i:83590747 original size:81 final size:82
Alignment explanation
Indices: 83590648--83590925 Score: 334
Period size: 81 Copynumber: 3.4 Consensus size: 82
83590638 GATTTGTGGG
* * * * *
83590648 AAAATGACTAAAATACCCTTGAAGGATAAAATGACT-GAAATACCCTCGAGGGGTAAAATGACTG
1 AAAATGACTAAAATACCCTCGAAGGGTAAAATGACTCAAAATACCCCCGAAGGGTAAAATGACTG
83590712 AAATACCCTTGAAGGGT
66 AAATACCCTTGAAGGGT
* * *
83590729 AAAATGACTGAAATACCCTCGAAAGGTAAAAT-AATCAAAATACCCCCGAAGGGTAAAATGACTG
1 AAAATGACTAAAATACCCTCGAAGGGTAAAATGACTCAAAATACCCCCGAAGGGTAAAATGACTG
* *
83590793 AAATA-ACTCTGTAGGGT
66 AAATACCCT-TGAAGGGT
* *
83590810 AAAATGACTAAAATACCC-CCATAGGGTAAAATGA-TCAAAATACCCCCAAAGGGTAAAATGA-T
1 AAAATGACTAAAATACCCTCGA-AGGGTAAAATGACTCAAAATACCCCCGAAGGGTAAAATGACT
* *
83590872 CGAAATACCCCTAAAGGGT
65 -GAAATACCCTTGAAGGGT
* * *
83590891 AAAATGGCTGAAATACCCCCGAAGGGTAAAATGAC
1 AAAATGACTAAAATACCCTCGAAGGGTAAAATGAC
83590926 CTCGTAGGGT
Statistics
Matches: 168, Mismatches: 21, Indels: 15
0.82 0.10 0.07
Matches are distributed among these distances:
80 7 0.04
81 157 0.93
82 4 0.02
ACGTcount: A:0.44, C:0.18, G:0.19, T:0.19
Consensus pattern (82 bp):
AAAATGACTAAAATACCCTCGAAGGGTAAAATGACTCAAAATACCCCCGAAGGGTAAAATGACTG
AAATACCCTTGAAGGGT
Found at i:83591351 original size:27 final size:27
Alignment explanation
Indices: 83591288--83591358 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
83591278 TATTGCACTG
*
83591288 TACTGATACTGAACTGGGCCAAGGCCA
1 TACTGATACTGTACTGGGCCAAGGCCA
* * * *
83591315 CACTGTTACTGTATTGGGCCAAGGGCTA
1 TACTGATACTGTACTGGGCCAA-GGCCA
83591343 TACTG-TACTGTTACTG
1 TACTGATACTG-TACTG
83591359 TATAAGGTTC
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
27 23 0.66
28 12 0.34
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.28
Consensus pattern (27 bp):
TACTGATACTGTACTGGGCCAAGGCCA
Found at i:83592007 original size:53 final size:52
Alignment explanation
Indices: 83591939--83592118 Score: 220
Period size: 53 Copynumber: 3.4 Consensus size: 52
83591929 CCATAGCAAA
* * *
83591939 AAGATCATATAGTGTAAGACCTAGTCTAGGATTAGACATCATATGAAGATAAG
1 AAGACCATATAGTGTAAGACCTAGTCTAAGACTAGACATCATATGAAGAT-AG
*
83591992 AAGACCATATAGTGTAAGACCTAGTCTAAGACTAAACATCATATGAAGAT--
1 AAGACCATATAGTGTAAGACCTAGTCTAAGACTAGACATCATATGAAGATAG
* * * * **
83592042 AAGATCATATAATGTAAGACCTAATCTAAGACTATGGCATCATATGGGGATACG
1 AAGACCATATAGTGTAAGACCTAGTCTAAGACTA-GACATCATATGAAGATA-G
*
83592096 AAGACCACATAGTGTAAGACCTA
1 AAGACCATATAGTGTAAGACCTA
83592119 ATCTGGGACT
Statistics
Matches: 109, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
50 31 0.28
51 12 0.11
53 46 0.42
54 20 0.18
ACGTcount: A:0.42, C:0.15, G:0.19, T:0.24
Consensus pattern (52 bp):
AAGACCATATAGTGTAAGACCTAGTCTAAGACTAGACATCATATGAAGATAG
Found at i:83592138 original size:54 final size:52
Alignment explanation
Indices: 83591939--83592152 Score: 209
Period size: 53 Copynumber: 4.1 Consensus size: 52
83591929 CCATAGCAAA
* * * *
83591939 AAGATCATATAGTGTAAGACCTAGTCTAGGATTA-GACATCATATGAAGATAAG
1 AAGACCATATAGTGTAAGACCTAATCTAAGACTATG-CATCATATGAAGAT-AG
* **
83591992 AAGACCATATAGTGTAAGACCTAGTCTAAGACTAAACATCATATGAAGAT--
1 AAGACCATATAGTGTAAGACCTAATCTAAGACTATGCATCATATGAAGATAG
* * **
83592042 AAGATCATATAATGTAAGACCTAATCTAAGACTATGGCATCATATGGGGATACG
1 AAGACCATATAGTGTAAGACCTAATCTAAGACTAT-GCATCATATGAAGATA-G
* ** * * *
83592096 AAGACCACATAGTGTAAGACCTAATCTGGGACTATGCTATCATGTGAGGAAAG
1 AAGACCATATAGTGTAAGACCTAATCTAAGACTATGC-ATCATATGAAGATAG
83592149 AAGA
1 AAGA
83592153 TAAAAATGGC
Statistics
Matches: 136, Mismatches: 19, Indels: 12
0.81 0.11 0.07
Matches are distributed among these distances:
50 31 0.23
51 12 0.09
53 52 0.38
54 41 0.30
ACGTcount: A:0.41, C:0.14, G:0.21, T:0.24
Consensus pattern (52 bp):
AAGACCATATAGTGTAAGACCTAATCTAAGACTATGCATCATATGAAGATAG
Found at i:83592561 original size:30 final size:30
Alignment explanation
Indices: 83592526--83592594 Score: 104
Period size: 30 Copynumber: 2.3 Consensus size: 30
83592516 TGTTTTTATT
* *
83592526 GCTATCTAATGATTTGTGGACACC-CTTGTG
1 GCTATCTAATGATGTATGGACACCTC-TGTG
83592556 GCTATCTAATGATGTATGGACACCTCTGTG
1 GCTATCTAATGATGTATGGACACCTCTGTG
83592586 GCTATCTAA
1 GCTATCTAA
83592595 GTCAAGTGGA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
30 35 0.97
31 1 0.03
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35
Consensus pattern (30 bp):
GCTATCTAATGATGTATGGACACCTCTGTG
Found at i:83596168 original size:17 final size:17
Alignment explanation
Indices: 83596148--83596189 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
83596138 TAATTTAGCC
83596148 ATTTTTTATTTTATTAT
1 ATTTTTTATTTTATTAT
*
83596165 ATTTTTGT-TTTTATTTT
1 ATTTTT-TATTTTATTAT
*
83596182 AATTTTTA
1 ATTTTTTA
83596190 CATTCTAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
16 1 0.05
17 19 0.90
18 1 0.05
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.76
Consensus pattern (17 bp):
ATTTTTTATTTTATTAT
Found at i:83607558 original size:102 final size:103
Alignment explanation
Indices: 83607388--83607599 Score: 383
Period size: 102 Copynumber: 2.1 Consensus size: 103
83607378 TAAATAATTA
83607388 TTATTTTAAATAATAATAACTCTATTATTTTTAATAAATTGATTTATAGAATTATTTGTAGATCG
1 TTATTTTAAATAATAATAACTCTATTATTTTTAATAAATTGATTTATAGAATTATTTGTAGATCG
83607453 ATTTAGTATTTGTATCCTATTA-TTTAAAAAATAAAAAG
66 ATTTAGTATTTGTATCCTATTAGTTT-AAAAATAAAAAG
* *
83607491 TTATTTTAAATAATAATAACTTTATT-TTTTTAATAAATTGATTTATAGAATTATTTGTAGATTG
1 TTATTTTAAATAATAATAACTCTATTATTTTTAATAAATTGATTTATAGAATTATTTGTAGATCG
83607555 ATTTAGTATTTGTATCCTATTAGTTTAAAAATAAAAAG
66 ATTTAGTATTTGTATCCTATTAGTTTAAAAATAAAAAG
83607593 TTATTTT
1 TTATTTT
83607600 TGTTATAAAA
Statistics
Matches: 106, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
102 78 0.74
103 28 0.26
ACGTcount: A:0.39, C:0.04, G:0.08, T:0.49
Consensus pattern (103 bp):
TTATTTTAAATAATAATAACTCTATTATTTTTAATAAATTGATTTATAGAATTATTTGTAGATCG
ATTTAGTATTTGTATCCTATTAGTTTAAAAATAAAAAG
Found at i:83610254 original size:64 final size:64
Alignment explanation
Indices: 83610184--83610303 Score: 197
Period size: 64 Copynumber: 1.9 Consensus size: 64
83610174 TAACTGATTC
*
83610184 CAACTAAATAGTCACCT-TCAAACATTTATTAACAAACACATTTAAACACACTAAACTTAATAAG
1 CAACTAAATAGTCACATGT-AAACATTTATTAACAAACACATTTAAACACACTAAACTTAATAAG
* *
83610248 CAACTAAATAGTCACATGTAAGCATTTATTAACAAACACATTTAAACACATTAAAC
1 CAACTAAATAGTCACATGTAAACATTTATTAACAAACACATTTAAACACACTAAAC
83610304 ACATTTAAAC
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
64 51 0.98
65 1 0.02
ACGTcount: A:0.48, C:0.21, G:0.04, T:0.27
Consensus pattern (64 bp):
CAACTAAATAGTCACATGTAAACATTTATTAACAAACACATTTAAACACACTAAACTTAATAAG
Found at i:83610303 original size:9 final size:10
Alignment explanation
Indices: 83610281--83610317 Score: 67
Period size: 10 Copynumber: 3.8 Consensus size: 10
83610271 ATTTATTAAC
83610281 AAACACATTT
1 AAACACATTT
83610291 AAACACA-TT
1 AAACACATTT
83610300 AAACACATTT
1 AAACACATTT
83610310 AAACACAT
1 AAACACAT
83610318 ATTAGACTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 9 0.35
10 17 0.65
ACGTcount: A:0.54, C:0.22, G:0.00, T:0.24
Consensus pattern (10 bp):
AAACACATTT
Found at i:83610305 original size:19 final size:19
Alignment explanation
Indices: 83610281--83610317 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
83610271 ATTTATTAAC
83610281 AAACACATTTAAACACATT
1 AAACACATTTAAACACATT
83610300 AAACACATTTAAACACAT
1 AAACACATTTAAACACAT
83610318 ATTAGACTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.54, C:0.22, G:0.00, T:0.24
Consensus pattern (19 bp):
AAACACATTTAAACACATT
Found at i:83610447 original size:19 final size:19
Alignment explanation
Indices: 83610420--83610531 Score: 72
Period size: 19 Copynumber: 6.1 Consensus size: 19
83610410 TTATTCCAGC
*
83610420 AACTAAATTAACTAAGATG
1 AACTTAATTAACTAAGATG
*
83610439 AACTTAATTAACTAATATG
1 AACTTAATTAACTAAGATG
* * * * *
83610458 -A-GTAATTTATTCCAG--C
1 AACTTAATTAACT-AAGATG
**
83610474 AACTTAATTAACTACCA-G
1 AACTTAATTAACTAAGATG
*
83610492 CAACTTAATTAACTAAGATA
1 -AACTTAATTAACTAAGATG
*
83610512 AACTCAATTAACTAAGATG
1 AACTTAATTAACTAAGATG
83610531 A
1 A
83610532 GTAATTTATT
Statistics
Matches: 67, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
17 8 0.12
18 9 0.13
19 50 0.75
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.30
Consensus pattern (19 bp):
AACTTAATTAACTAAGATG
Found at i:83616070 original size:13 final size:13
Alignment explanation
Indices: 83616052--83616083 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
83616042 GAGATAATCA
83616052 GAATTGAAGCTTG
1 GAATTGAAGCTTG
83616065 GAATTGAAGCTTG
1 GAATTGAAGCTTG
83616078 GAATTG
1 GAATTG
83616084 CTTAGTCGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.31, C:0.06, G:0.31, T:0.31
Consensus pattern (13 bp):
GAATTGAAGCTTG
Found at i:83621573 original size:23 final size:23
Alignment explanation
Indices: 83621514--83621574 Score: 104
Period size: 23 Copynumber: 2.7 Consensus size: 23
83621504 TTGTTCAACT
**
83621514 CAGGAACATGGCCACAATAAAAA
1 CAGGAACATGGCCTTAATAAAAA
83621537 CAGGAACATGGCCTTAATAAAAA
1 CAGGAACATGGCCTTAATAAAAA
83621560 CAGGAACATGGCCTT
1 CAGGAACATGGCCTT
83621575 CATTTGTCCA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.44, C:0.21, G:0.20, T:0.15
Consensus pattern (23 bp):
CAGGAACATGGCCTTAATAAAAA
Found at i:83623080 original size:119 final size:120
Alignment explanation
Indices: 83622877--83623291 Score: 665
Period size: 120 Copynumber: 3.5 Consensus size: 120
83622867 AATTATTTTA
* * *
83622877 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCCAATTATATTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTT
*
83622941 TATAGCATCATATATTATGATTTTG-GTAAATTCATATAAGAATATTGATTATTAAG
65 TATAGTATCATATATTATGA-TTTGAGTAAATTCATATAAGAATATTGATTATTAAG
* * * *
83622997 GATTTTATTAAATTAT-TATTTTAATTAAAACATATTTAATAATTATTATGTTAAATTATCTTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
*
83623061 ATAGTAACATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
* *
83623116 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
83623181 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
* * *
83623236 AATTTTATTAAATTATATATTTTAATTATAATATATTTAAAAATAATTGTGTTAAA
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
83623292 CTATGATTAA
Statistics
Matches: 273, Mismatches: 19, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
118 4 0.01
119 103 0.38
120 166 0.61
ACGTcount: A:0.42, C:0.03, G:0.06, T:0.49
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
Found at i:83623134 original size:61 final size:61
Alignment explanation
Indices: 83623069--83623256 Score: 208
Period size: 61 Copynumber: 3.1 Consensus size: 61
83623059 TTATAGTAAC
83623069 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
* * * * * * * * * *
83623130 ATATATTTTAATTAT-AATATATTTA-ATAATAAT-TATG-TTAATTTA-TATTTTA-TAGTATC
1 ATATATTATGATT-TGAGTAAATTCATATAAGAATAT-TGATT-ATTAAGAATTTTATTA-AATT
83623189 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
83623250 ATATATT
1 ATATATT
83623257 TTAATTATAA
Statistics
Matches: 97, Mismatches: 20, Indels: 20
0.71 0.15 0.15
Matches are distributed among these distances:
58 3 0.03
59 29 0.30
60 26 0.27
61 36 0.37
62 3 0.03
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.49
Consensus pattern (61 bp):
ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
Found at i:83623156 original size:15 final size:15
Alignment explanation
Indices: 83623121--83623172 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
83623111 TTAAGAATTT
*
83623121 TATTAAATTAT-ATA
1 TATTTAATTATAATA
83623135 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
83623149 TATTTAATAATAAT-
1 TATTTAATTATAATA
83623163 TATGTTAATT
1 TAT-TTAATT
83623173 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:83624071 original size:44 final size:45
Alignment explanation
Indices: 83624007--83624097 Score: 114
Period size: 44 Copynumber: 2.0 Consensus size: 45
83623997 CTATTACACA
* *
83624007 TCTATTCCATTCAACCAAATACA-AGA-ATACTATTACGCCTCTAT
1 TCTATTACATTCAACAAAATA-ATAGATATACTATTACGCCTCTAT
* * *
83624051 TCTATTACATTCAACAAAATAATTGATTTACTATTATGCCTCTAT
1 TCTATTACATTCAACAAAATAATAGATATACTATTACGCCTCTAT
83624096 TC
1 TC
83624098 CAATACAGCA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
43 1 0.03
44 21 0.52
45 18 0.45
ACGTcount: A:0.35, C:0.23, G:0.04, T:0.37
Consensus pattern (45 bp):
TCTATTACATTCAACAAAATAATAGATATACTATTACGCCTCTAT
Found at i:83625517 original size:51 final size:50
Alignment explanation
Indices: 83625441--83625545 Score: 165
Period size: 51 Copynumber: 2.1 Consensus size: 50
83625431 GTAGCTATAA
* * *
83625441 ATCATTTGTTTATATTAAGTGTCCATGTGTTGTATGTATCAAGATAGGGT
1 ATCATTTGTTTAAATTAAGTGTCCATGTGTTGCACGTATCAAGATAGGGT
*
83625491 ATCATTTGTTTAAATTTAAGTGTCCATTTGTTGCACGTATCAAGATAGGGT
1 ATCATTTGTTTAAA-TTAAGTGTCCATGTGTTGCACGTATCAAGATAGGGT
83625542 ATCA
1 ATCA
83625546 AAACCAGCAT
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
50 13 0.26
51 37 0.74
ACGTcount: A:0.28, C:0.10, G:0.20, T:0.42
Consensus pattern (50 bp):
ATCATTTGTTTAAATTAAGTGTCCATGTGTTGCACGTATCAAGATAGGGT
Found at i:83628171 original size:26 final size:27
Alignment explanation
Indices: 83628142--83628248 Score: 94
Period size: 26 Copynumber: 3.9 Consensus size: 27
83628132 TATATTTTTG
83628142 TTAAATTATATTTAATAATAATTATT-
1 TTAAATTATATTTAATAATAATTATTA
* *
83628168 TTAAAATATATTTTATAAT-ATTATATA
1 TTAAATTATATTTAATAATAATTAT-TA
* * * * *
83628195 TTATGATTTTAGTAAATTCATATATT-TTA
1 TTA-AATTATATTTAA-TAATA-ATTATTA
83628224 TTAAATTATATTTAATAATAATTAT
1 TTAAATTATATTTAATAATAATTAT
83628249 GTTAAAATAT
Statistics
Matches: 60, Mismatches: 14, Indels: 13
0.69 0.16 0.15
Matches are distributed among these distances:
25 5 0.08
26 21 0.35
27 8 0.13
28 14 0.23
29 8 0.13
30 1 0.02
31 3 0.05
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.53
Consensus pattern (27 bp):
TTAAATTATATTTAATAATAATTATTA
Found at i:83628223 original size:18 final size:17
Alignment explanation
Indices: 83628200--83628234 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
83628190 ATATATTATG
83628200 ATTTTAGTAAATTCATAT
1 ATTTTAGTAAATT-ATAT
*
83628218 ATTTTATTAAATTATAT
1 ATTTTAGTAAATTATAT
83628235 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.54
Consensus pattern (17 bp):
ATTTTAGTAAATTATAT
Found at i:83628449 original size:16 final size:16
Alignment explanation
Indices: 83628424--83628461 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
83628414 AGGATTACCT
*
83628424 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
83628440 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
83628456 ATTACA
1 ATTACA
83628462 GCGAATCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.26, C:0.34, G:0.03, T:0.37
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:83630617 original size:13 final size:13
Alignment explanation
Indices: 83630599--83630625 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
83630589 TGCATATTTA
83630599 AGCAAAAATATTC
1 AGCAAAAATATTC
83630612 AGCAAAAATATTC
1 AGCAAAAATATTC
83630625 A
1 A
83630626 AGTAGTTGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.15, G:0.07, T:0.22
Consensus pattern (13 bp):
AGCAAAAATATTC
Found at i:83631958 original size:9 final size:9
Alignment explanation
Indices: 83631944--83631969 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
83631934 TTTATTTTTA
83631944 AAAATATTT
1 AAAATATTT
83631953 AAAATATTT
1 AAAATATTT
83631962 AAAATATT
1 AAAATATT
83631970 AATATAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (9 bp):
AAAATATTT
Found at i:83635286 original size:15 final size:15
Alignment explanation
Indices: 83635250--83635287 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
83635240 TACACTCAAT
*
83635250 ATTTGTAGTACACTC
1 ATTTGTGGTACACTC
83635265 ATTTGTGGTACACTC
1 ATTTGTGGTACACTC
83635280 ATTTGTGG
1 ATTTGTGG
83635288 CTATACTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.21, C:0.16, G:0.21, T:0.42
Consensus pattern (15 bp):
ATTTGTGGTACACTC
Found at i:83636494 original size:12 final size:12
Alignment explanation
Indices: 83636477--83636510 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
83636467 TATATATTAT
83636477 ATAAAAAATAAA
1 ATAAAAAATAAA
*
83636489 ATAAAAAATAAT
1 ATAAAAAATAAA
*
83636501 ATATAAAATA
1 ATAAAAAATA
83636511 TATATATGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (12 bp):
ATAAAAAATAAA
Found at i:83636531 original size:7 final size:7
Alignment explanation
Indices: 83636475--83636539 Score: 53
Period size: 7 Copynumber: 9.1 Consensus size: 7
83636465 AATATATATT
83636475 ATATAAA
1 ATATAAA
*
83636482 AAATAAA
1 ATATAAA
83636489 ATA-AAA
1 ATATAAA
*
83636495 A-ATAAT
1 ATATAAA
83636501 ATATAAA
1 ATATAAA
83636508 ATATATATA
1 ATATA-A-A
*
83636517 TGTATAAA
1 -ATATAAA
*
83636525 ATGTAAA
1 ATATAAA
83636532 ATATAAA
1 ATATAAA
83636539 A
1 A
83636540 AATGTATGAA
Statistics
Matches: 45, Mismatches: 8, Indels: 10
0.71 0.13 0.16
Matches are distributed among these distances:
5 1 0.02
6 7 0.16
7 29 0.64
8 2 0.04
9 2 0.04
10 4 0.09
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (7 bp):
ATATAAA
Found at i:83636535 original size:33 final size:33
Alignment explanation
Indices: 83636484--83636565 Score: 85
Period size: 34 Copynumber: 2.4 Consensus size: 33
83636474 TATATAAAAA
*
83636484 ATAAAATAAAAAATAATATATAAAATATAT-ATATGT
1 ATAAAATATAAAAT-ATA-A-AAAATATATAATAT-T
* *
83636520 ATAAAATGTAAAATATAAAAAATGTATGAATATT
1 ATAAAATATAAAATATAAAAAATATAT-AATATT
83636554 ATAAAATATAAA
1 ATAAAATATAAA
83636566 TGGATATACG
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
33 8 0.20
34 13 0.32
35 7 0.17
36 12 0.30
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (33 bp):
ATAAAATATAAAATATAAAAAATATATAATATT
Done.