Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 275 of 313
Found at i:84015683 original size:15 final size:14
Alignment explanation
Indices: 84015659--84015698 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 14
84015649 AAAGAGGAAT
84015659 TTTAAAATAACTAA
1 TTTAAAATAACTAA
84015673 TTTAAAGATAACTAAA
1 TTTAAA-ATAACT-AA
84015689 TTTTAAAATA
1 -TTTAAAATA
84015699 TCATATATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 6 0.26
15 6 0.26
16 5 0.22
17 6 0.26
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.38
Consensus pattern (14 bp):
TTTAAAATAACTAA
Found at i:84019070 original size:31 final size:31
Alignment explanation
Indices: 84019008--84019073 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
84018998 AATAAACTAT
** * *
84019008 TTTGGTACTTGAGTTTGGTTTCAATATTCAA
1 TTTGGTACTTGAGTTTGCCTTCAACACTCAA
*
84019039 TTTGGTACTTGAGTTTGCCTTCAACGCTCAA
1 TTTGGTACTTGAGTTTGCCTTCAACACTCAA
84019070 TTTG
1 TTTG
84019074 ATAACTAGAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.20, C:0.15, G:0.20, T:0.45
Consensus pattern (31 bp):
TTTGGTACTTGAGTTTGCCTTCAACACTCAA
Found at i:84024447 original size:20 final size:20
Alignment explanation
Indices: 84024419--84024458 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
84024409 TCTTCATTGA
*
84024419 ATTTGACTTTTAAAATTACT
1 ATTTGACTTTCAAAATTACT
* *
84024439 ATTTTACTTTCATAATTACT
1 ATTTGACTTTCAAAATTACT
84024459 TTGGGAGAGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.12, G:0.03, T:0.53
Consensus pattern (20 bp):
ATTTGACTTTCAAAATTACT
Found at i:84029983 original size:3 final size:3
Alignment explanation
Indices: 84029975--84030014 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
84029965 AAAAACAATT
*
84029975 ATA ATA ATA ATA ATA ATA ACA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
84030015 AATTGCTAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:84031732 original size:44 final size:44
Alignment explanation
Indices: 84031669--84032223 Score: 428
Period size: 44 Copynumber: 12.8 Consensus size: 44
84031659 ATATAAGATC
* *
84031669 CTTTAATCCGCTCCACTGTAATCTCAGGGAGATAAGATTACTAT
1 CTTTGATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAT
*
84031713 CTTTGATCTGCTCCTCTGTAATCTCAGGGAGATAAGATCTGCACT-T
1 CTTTGATCTGCTCCACTGTAATCTCAGGGAGATAAGAT-T--ACTAT
* * *
84031759 CTTCGGTTTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAT
1 CTTTGATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAT
*
84031803 CTTTGATCTGCTCCTCTGTAATCTCAGGGAGATAAGATCTGCACT-T
1 CTTTGATCTGCTCCACTGTAATCTCAGGGAGATAAGAT-T--ACTAT
* * * *
84031849 CTTCGGTTTGCTCCACTGTAATCTCAGGGAGATAAGA--CCTGAT
1 CTTTGATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACT-AT
** * *
84031892 AC---GATCCACTCTACTGTAA-CTTCAGAGAGATAAGA-T-C---
1 -CTTTGATCTGCTCCACTGTAATC-TCAGGGAGATAAGATTACTAT
* * *
84031929 CTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAT
1 CTTTGATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAT
* *
84031973 CTTTGATCTGCTCCGCTGTAATCTCAAGGAGATAAGATCTGCACT-T
1 CTTTGATCTGCTCCACTGTAATCTCAGGGAGATAAGAT-T--ACTAT
* * * *
84032019 CTTCGGTATGCTCCACTGTAATCTCAGGGAGATAAGA--CCTGAT
1 CTTTGATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACT-AT
** * *
84032062 AC---GATCCACTCTACTGTAA-CTTCAGAGAGATAAGA-T-C---
1 -CTTTGATCTGCTCCACTGTAATC-TCAGGGAGATAAGATTACTAT
* *
84032099 CTTTAATCTGCTCCACTGTAATCTCAGGGAGATAGGATTACTAT
1 CTTTGATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAT
* * * * *
84032143 CTTTGATCTGCTCCGCTATGATCTCA-GGAGATCAGATCT-GTAAT
1 CTTTGATCTGCTCCACTGTAATCTCAGGGAGATAAGAT-TACT-AT
*
84032187 -TTTCGGTCTGCTCCACTGTAATCTCAGGGAGATAAGA
1 CTTT-GATCTGCTCCACTGTAATCTCAGGGAGATAAGA
84032224 CCTGTATAAT
Statistics
Matches: 407, Mismatches: 62, Indels: 83
0.74 0.11 0.15
Matches are distributed among these distances:
36 2 0.00
39 51 0.13
40 6 0.01
41 58 0.14
43 18 0.04
44 148 0.36
45 13 0.03
46 102 0.25
47 9 0.02
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (44 bp):
CTTTGATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAT
Found at i:84031831 original size:90 final size:89
Alignment explanation
Indices: 84031678--84032223 Score: 570
Period size: 90 Copynumber: 6.3 Consensus size: 89
84031668 CCTTTAATCC
84031678 GCTCCACTGTAATCTCAGGGAGATAAGATTACTATCTTTGATCTGCTCCTCTGTAATCTCAGGGA
1 GCTCCACTGTAATCTCAGGGAGATAAGATTACTATCTTTGATCTGCTCCTCTGTAATCTCAGGGA
*
84031743 GATAAGATCTGCACTTCTTCGGTTT
66 GATAAGATCTGCACTT-TTCGGTCT
84031768 GCTCCACTGTAATCTCAGGGAGATAAGATTACTATCTTTGATCTGCTCCTCTGTAATCTCAGGGA
1 GCTCCACTGTAATCTCAGGGAGATAAGATTACTATCTTTGATCTGCTCCTCTGTAATCTCAGGGA
*
84031833 GATAAGATCTGCACTTCTTCGGTTT
66 GATAAGATCTGCACTT-TTCGGTCT
* **
84031858 GCTCCACTGTAATCTCAGGGAGATAAGA--CCTGATAC---GATCCACT-CTACTGTAA-CTTCA
1 GCTCCACTGTAATCTCAGGGAGATAAGATTACT-AT-CTTTGATCTGCTCCT-CTGTAATC-TCA
* ** *
84031916 GAGAGATAAGA--T-C-C-TTT-AATCC
62 GGGAGATAAGATCTGCACTTTTCGGTCT
* * *
84031938 GCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTTGATCTGCTCCGCTGTAATCTCAAGGA
1 GCTCCACTGTAATCTCAGGGAGATAAGATTACTATCTTTGATCTGCTCCTCTGTAATCTCAGGGA
*
84032003 GATAAGATCTGCACTTCTTCGGTAT
66 GATAAGATCTGCACTT-TTCGGTCT
* **
84032028 GCTCCACTGTAATCTCAGGGAGATAAGA--CCTGATAC---GATCCACT-CTACTGTAA-CTTCA
1 GCTCCACTGTAATCTCAGGGAGATAAGATTACT-AT-CTTTGATCTGCTCCT-CTGTAATC-TCA
* **
84032086 GAGAGATAAGA--T-C-C-TTT-AATCT
62 GGGAGATAAGATCTGCACTTTTCGGTCT
* * * *
84032108 GCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTTGATCTGCTCCGCTATGATCTCA-GGA
1 GCTCCACTGTAATCTCAGGGAGATAAGATTACTATCTTTGATCTGCTCCTCTGTAATCTCAGGGA
* * *
84032172 GATCAGATCTGTAATTTTCGGTCT
66 GATAAGATCTGCACTTTTCGGTCT
84032196 GCTCCACTGTAATCTCAGGGAGATAAGA
1 GCTCCACTGTAATCTCAGGGAGATAAGA
84032224 CCTGTATAAT
Statistics
Matches: 378, Mismatches: 43, Indels: 72
0.77 0.09 0.15
Matches are distributed among these distances:
80 59 0.16
81 8 0.02
82 14 0.04
83 39 0.10
84 7 0.02
85 3 0.01
86 6 0.02
87 53 0.14
88 35 0.09
89 6 0.02
90 148 0.39
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (89 bp):
GCTCCACTGTAATCTCAGGGAGATAAGATTACTATCTTTGATCTGCTCCTCTGTAATCTCAGGGA
GATAAGATCTGCACTTTTCGGTCT
Found at i:84031950 original size:170 final size:169
Alignment explanation
Indices: 84031768--84032227 Score: 805
Period size: 170 Copynumber: 2.7 Consensus size: 169
84031758 TCTTCGGTTT
* *
84031768 GCTCCACTGTAATCTCAGGGAGATAAGATTACTATCTTTGATCTGCTCCTCTGTAATCTCAGGGA
1 GCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTTGATCTGCTCCGCTGTAATCTCA-GGA
*
84031833 GATAAGATCTGCACTTCTTCGGTTTGCTCCACTGTAATCTCAGGGAGATAAGACCTGATACGATC
65 GATAAGATCTGCACTTCTTCGGTATGCTCCACTGTAATCTCAGGGAGATAAGACCTGATACGATC
84031898 CACTCTACTGTAACTTCAGAGAGATAAGATCCTTTAATCC
130 CACTCTACTGTAACTTCAGAGAGATAAGATCCTTTAATCC
84031938 GCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTTGATCTGCTCCGCTGTAATCTCAAGGA
1 GCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTTGATCTGCTCCGCTGTAATCTC-AGGA
84032003 GATAAGATCTGCACTTCTTCGGTATGCTCCACTGTAATCTCAGGGAGATAAGACCTGATACGATC
65 GATAAGATCTGCACTTCTTCGGTATGCTCCACTGTAATCTCAGGGAGATAAGACCTGATACGATC
*
84032068 CACTCTACTGTAACTTCAGAGAGATAAGATCCTTTAATCT
130 CACTCTACTGTAACTTCAGAGAGATAAGATCCTTTAATCC
* *
84032108 GCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTTGATCTGCTCCGCTATGATCTCAGGAG
1 GCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTTGATCTGCTCCGCTGTAATCTCAGGAG
* * * *
84032173 ATCAGATCTGTAATT-TTCGGTCTGCTCCACTGTAATCTCAGGGAGATAAGACCTG
66 ATAAGATCTGCACTTCTTCGGTATGCTCCACTGTAATCTCAGGGAGATAAGACCTG
84032228 TATAATGAAC
Statistics
Matches: 279, Mismatches: 10, Indels: 4
0.95 0.03 0.01
Matches are distributed among these distances:
168 39 0.14
169 17 0.06
170 222 0.80
171 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (169 bp):
GCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTTGATCTGCTCCGCTGTAATCTCAGGAG
ATAAGATCTGCACTTCTTCGGTATGCTCCACTGTAATCTCAGGGAGATAAGACCTGATACGATCC
ACTCTACTGTAACTTCAGAGAGATAAGATCCTTTAATCC
Found at i:84031983 original size:260 final size:260
Alignment explanation
Indices: 84031522--84032055 Score: 854
Period size: 260 Copynumber: 2.1 Consensus size: 260
84031512 CTCCGCAACG
*
84031522 TCAGGGAGAT-AGAATTACTGGCTTCAATCTGCTCCGCTATAATCTCAGGGAGATAAGATCTGAA
1 TCAGGGAGATAAG-ATTACTAGCTTCAATCTGCTCCGCTATAATCTCAGGGAGATAAGATCTGAA
* * * * *
84031586 ATTCTTCGGTCTGTTCCACTGTAATCTCTGGGAAATAAGACCTGACGCGATCTACTCTGCTGTAA
65 ATTCTTCGGTCTGCTCCACTGTAATCTCAGGGAAATAAGACCTGACACGATCCACTCTACTGTAA
* *
84031651 CTTTAGAGATATAAGATCCTTTAATCCGCTCCACTGTAATCTCAGGGAGATAAGATTACTATCTT
130 CTTCAGAGAGATAAGATCCTTTAATCCGCTCCACTGTAATCTCAGGGAGATAAGATTACTATCTT
* * *
84031716 TGATCTGCTCCTCTGTAATCTCAGGGAGATAAGATCTGCACTTCTTCGGTTTGCTCCACTGTAAT
195 TGATCTGCTCCGCTGTAATCTCAAGGAGATAAGATCTGCACTTCTTCGGTATGCTCCACTGTAAT
84031781 C
260 C
* ** * * * *
84031782 TCAGGGAGATAAGATTACTATCTTTGATCTGCTCCTCTGTAATCTCAGGGAGATAAGATCTGCAC
1 TCAGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTATAATCTCAGGGAGATAAGATCTGAAA
* * *
84031847 TTCTTCGGTTTGCTCCACTGTAATCTCAGGGAGATAAGACCTGATACGATCCACTCTACTGTAAC
66 TTCTTCGGTCTGCTCCACTGTAATCTCAGGGAAATAAGACCTGACACGATCCACTCTACTGTAAC
*
84031912 TTCAGAGAGATAAGATCCTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTT
131 TTCAGAGAGATAAGATCCTTTAATCCGCTCCACTGTAATCTCAGGGAGATAAGATTACTATCTTT
84031977 GATCTGCTCCGCTGTAATCTCAAGGAGATAAGATCTGCACTTCTTCGGTATGCTCCACTGTAATC
196 GATCTGCTCCGCTGTAATCTCAAGGAGATAAGATCTGCACTTCTTCGGTATGCTCCACTGTAATC
84032042 TCAGGGAGATAAGA
1 TCAGGGAGATAAGA
84032056 CCTGATACGA
Statistics
Matches: 251, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
260 249 0.99
261 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (260 bp):
TCAGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTATAATCTCAGGGAGATAAGATCTGAAA
TTCTTCGGTCTGCTCCACTGTAATCTCAGGGAAATAAGACCTGACACGATCCACTCTACTGTAAC
TTCAGAGAGATAAGATCCTTTAATCCGCTCCACTGTAATCTCAGGGAGATAAGATTACTATCTTT
GATCTGCTCCGCTGTAATCTCAAGGAGATAAGATCTGCACTTCTTCGGTATGCTCCACTGTAATC
Found at i:84043893 original size:3 final size:3
Alignment explanation
Indices: 84043885--84043921 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
84043875 AAAAACAATT
*
84043885 ATA ATA ATA ATA ATA ATA ACA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
84043922 ATTTGCTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:84049572 original size:2 final size:2
Alignment explanation
Indices: 84049565--84049595 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
84049555 TCCTCTTATA
84049565 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
84049596 TGTTACAGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:84049881 original size:31 final size:31
Alignment explanation
Indices: 84049846--84049917 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 31
84049836 AATAAATTAT
**
84049846 TTTGGTACCTGAGTTTGGTTTCAATATTCAA
1 TTTGGTACCTGAGTTTGCCTTCAATATTCAA
** *
84049877 TTTGGTATTTGAGTTTGCCTTCAATGTTCAA
1 TTTGGTACCTGAGTTTGCCTTCAATATTCAA
*
84049908 TTTGATACCT
1 TTTGGTACCT
84049918 AGTCAAAATA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.21, C:0.14, G:0.18, T:0.47
Consensus pattern (31 bp):
TTTGGTACCTGAGTTTGCCTTCAATATTCAA
Found at i:84051492 original size:21 final size:22
Alignment explanation
Indices: 84051467--84051507 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
84051457 TGTAAAAATA
84051467 TTAAT-ATTAAA-AATATTTTAT
1 TTAATAATTAAACAA-ATTTTAT
84051488 TTAATAATTAAACAAATTTT
1 TTAATAATTAAACAAATTTT
84051508 TTCAGTTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.28
22 11 0.61
23 2 0.11
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (22 bp):
TTAATAATTAAACAAATTTTAT
Found at i:84065231 original size:21 final size:23
Alignment explanation
Indices: 84065193--84065236 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 23
84065183 TTAAAAATAA
84065193 TAAAAATAATAAACAAAATTTAT
1 TAAAAATAATAAACAAAATTTAT
*
84065216 TAAAAA-AATTAA-AAAATTTAT
1 TAAAAATAATAAACAAAATTTAT
84065237 ATTTTTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 9 0.45
22 5 0.25
23 6 0.30
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (23 bp):
TAAAAATAATAAACAAAATTTAT
Found at i:84067151 original size:11 final size:11
Alignment explanation
Indices: 84067131--84067160 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
84067121 AATAAAAAAA
*
84067131 TAAAAATATTT
1 TAAAATTATTT
84067142 TAAAATTATTT
1 TAAAATTATTT
84067153 TAAAATTA
1 TAAAATTA
84067161 AAAAATAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (11 bp):
TAAAATTATTT
Found at i:84069092 original size:9 final size:9
Alignment explanation
Indices: 84069078--84069108 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
84069068 GTTAAACGAA
84069078 TCGAGTTAT
1 TCGAGTTAT
*
84069087 TCGAGTTAA
1 TCGAGTTAT
84069096 TCGAGTTAT
1 TCGAGTTAT
84069105 TCGA
1 TCGA
84069109 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:84069186 original size:9 final size:9
Alignment explanation
Indices: 84069162--84069198 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
84069152 TGAGTTTTCG
*
84069162 AATTCAAAT
1 AATTCGAAT
*
84069171 AACTCGAAT
1 AATTCGAAT
84069180 AATTCGAAT
1 AATTCGAAT
84069189 AATTCGAAT
1 AATTCGAAT
84069198 A
1 A
84069199 TCAAACTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.49, C:0.14, G:0.08, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:84073023 original size:4 final size:4
Alignment explanation
Indices: 84073009--84073049 Score: 55
Period size: 4 Copynumber: 10.0 Consensus size: 4
84072999 AAATATTTGT
* *
84073009 TAAA AAAA TAAA TAAA TAAA TAAA TAATA TATA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAA-A TAAA TAAA TAAA
84073050 AACTAATTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
4 29 0.91
5 3 0.09
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (4 bp):
TAAA
Found at i:84082483 original size:30 final size:31
Alignment explanation
Indices: 84082414--84082485 Score: 92
Period size: 31 Copynumber: 2.4 Consensus size: 31
84082404 AATCATTGGC
* * * *
84082414 TAATGAAAAGGGATAGCTTCGGCTATCAAAA
1 TAATGAAAAGGAATAACCTCAGCTATCAAAA
84082445 TAATGAAAAGGAATAACCTCAGCTATC-AAA
1 TAATGAAAAGGAATAACCTCAGCTATCAAAA
*
84082475 TTATGAAAAGG
1 TAATGAAAAGG
84082486 GTTGGTGACG
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
30 13 0.36
31 23 0.64
ACGTcount: A:0.46, C:0.12, G:0.19, T:0.22
Consensus pattern (31 bp):
TAATGAAAAGGAATAACCTCAGCTATCAAAA
Found at i:84082515 original size:29 final size:29
Alignment explanation
Indices: 84082477--84082532 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
84082467 CTATCAAATT
* *
84082477 ATGAAAAGGGTTGGTGACGACCATCAATA
1 ATGAAAAGGGATAGTGACGACCATCAATA
*
84082506 ATGAAAAGGGATAGTGACGACTATCAA
1 ATGAAAAGGGATAGTGACGACCATCAA
84082533 ATTGTGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.41, C:0.12, G:0.27, T:0.20
Consensus pattern (29 bp):
ATGAAAAGGGATAGTGACGACCATCAATA
Found at i:84082614 original size:30 final size:30
Alignment explanation
Indices: 84082416--84082635 Score: 185
Period size: 30 Copynumber: 7.3 Consensus size: 30
84082406 TCATTGGCTA
*
84082416 ATGAAAAGGGATAGCTTCGGCTATCAAAATA
1 ATGAAAAGGGATAGCTTCGGCTATC-AAATT
* * * *
84082447 ATGAAAAGGAATAACCTCAGCTATCAAATT
1 ATGAAAAGGGATAGCTTCGGCTATCAAATT
* * * * * *
84082477 ATGAAAAGGG-TTGGTGACGACCATC-AATA
1 ATGAAAAGGGATAGCT-TCGGCTATCAAATT
* *
84082506 ATGAAAAGGGATAG-TGACGACTATCAAATT
1 ATGAAAAGGGATAGCT-TCGGCTATCAAATT
* *
84082536 GTGAAATGGGATAGCTTCGGCTATCAAATT
1 ATGAAAAGGGATAGCTTCGGCTATCAAATT
* *
84082566 GTGAAATGGGATAGCTTCGGCTATCAAATT
1 ATGAAAAGGGATAGCTTCGGCTATCAAATT
* * * * **
84082596 ATAAAAAGGGATAACTTCGACTATCGAGCT
1 ATGAAAAGGGATAGCTTCGGCTATCAAATT
84082626 ATGAAAAGGG
1 ATGAAAAGGG
84082636 TTGGGACAAC
Statistics
Matches: 154, Mismatches: 31, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
29 24 0.16
30 108 0.70
31 22 0.14
ACGTcount: A:0.39, C:0.13, G:0.24, T:0.24
Consensus pattern (30 bp):
ATGAAAAGGGATAGCTTCGGCTATCAAATT
Found at i:84100922 original size:19 final size:19
Alignment explanation
Indices: 84100889--84100936 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
84100879 TAAACAATTC
84100889 AATAATATAAA--TAATAT
1 AATAATATAAATTTAATAT
*
84100906 AA-AATATGAAATTTAATTT
1 AATAATAT-AAATTTAATAT
84100925 AATAATATAAAT
1 AATAATATAAAT
84100937 AGTAGATATA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
16 5 0.19
17 5 0.19
19 11 0.42
20 5 0.19
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (19 bp):
AATAATATAAATTTAATAT
Found at i:84101196 original size:31 final size:30
Alignment explanation
Indices: 84101161--84101220 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
84101151 AGTGGTGGGA
*
84101161 TGGGAAGGAAATAAAAGTTTTAGGGGAAAAG
1 TGGG-AGGAAATAAAAATTTTAGGGGAAAAG
* * *
84101192 TGGGAGGGAGTAAAAATTTTGGGGGAAAA
1 TGGGAGGAAATAAAAATTTTAGGGGAAAA
84101221 TAAAAGGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.42, C:0.00, G:0.38, T:0.20
Consensus pattern (30 bp):
TGGGAGGAAATAAAAATTTTAGGGGAAAAG
Found at i:84110159 original size:24 final size:24
Alignment explanation
Indices: 84110127--84110174 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
84110117 TCCTAGCTAG
84110127 TACACACTTAATCAAATAAAACAA
1 TACACACTTAATCAAATAAAACAA
*
84110151 TACACACTTAATTAAATAAAACAA
1 TACACACTTAATCAAATAAAACAA
84110175 ACATTCAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.58, C:0.19, G:0.00, T:0.23
Consensus pattern (24 bp):
TACACACTTAATCAAATAAAACAA
Found at i:84111844 original size:15 final size:15
Alignment explanation
Indices: 84111798--84111849 Score: 61
Period size: 15 Copynumber: 3.3 Consensus size: 15
84111788 GATTACTCTC
84111798 TTCACTCGTTTCTTT
1 TTCACTCGTTTCTTT
84111813 TTCAAGCCCTC-TTTCTTT
1 TTC-A---CTCGTTTCTTT
84111831 TTCACTCGTTTCTTT
1 TTCACTCGTTTCTTT
84111846 TTCA
1 TTCA
84111850 GTCTCTTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
14 3 0.09
15 14 0.44
16 1 0.03
17 1 0.03
18 10 0.31
19 3 0.09
ACGTcount: A:0.10, C:0.29, G:0.06, T:0.56
Consensus pattern (15 bp):
TTCACTCGTTTCTTT
Found at i:84111862 original size:18 final size:17
Alignment explanation
Indices: 84111806--84111876 Score: 65
Period size: 18 Copynumber: 4.1 Consensus size: 17
84111796 TCTTCACTCG
*
84111806 TTTCTTTTTCAAGCCCTC
1 TTTCTTTTTC-AGCTCTC
*
84111824 TTTCTTTTTCA-CTC-G
1 TTTCTTTTTCAGCTCTC
*
84111839 TTTCTTTTTCAGTCTCTT
1 TTTCTTTTTCAG-CTCTC
*
84111857 TTTCTTTTTTACGCTCTC
1 TTTCTTTTTCA-GCTCTC
84111875 TT
1 TT
84111877 CTATTTTGAA
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
15 11 0.25
16 2 0.05
17 4 0.09
18 26 0.59
19 1 0.02
ACGTcount: A:0.07, C:0.27, G:0.06, T:0.61
Consensus pattern (17 bp):
TTTCTTTTTCAGCTCTC
Found at i:84112057 original size:30 final size:30
Alignment explanation
Indices: 84112022--84112082 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
84112012 ATGTGAAGCT
* *
84112022 TGCTGATTAATGAACTTGTTGGCAGCCGAA
1 TGCTGATGAATGAACTTGTTAGCAGCCGAA
*
84112052 TGCTGATGAATGAACTTGTTAGCAGTCGAA
1 TGCTGATGAATGAACTTGTTAGCAGCCGAA
84112082 T
1 T
84112083 CGTTTTTAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (30 bp):
TGCTGATGAATGAACTTGTTAGCAGCCGAA
Found at i:84114104 original size:21 final size:22
Alignment explanation
Indices: 84114057--84114102 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
84114047 AAGACATCCA
*
84114057 AAACCAACATCATTTTTGGTTC
1 AAACTAACATCATTTTTGGTTC
84114079 AAACTAACATCATTTTTGGTTC
1 AAACTAACATCATTTTTGGTTC
84114101 AA
1 AA
84114103 CTCATGAACC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.35, C:0.20, G:0.09, T:0.37
Consensus pattern (22 bp):
AAACTAACATCATTTTTGGTTC
Found at i:84120894 original size:30 final size:30
Alignment explanation
Indices: 84120833--84120894 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 30
84120823 GCTTTTTGAA
* * * *
84120833 AATATTTACAAAAAGTGGCATCTAATTTTT
1 AATATTTACAAAAAGTAGCACCAAATCTTT
84120863 AATATTTACAAAAAG-AGCAACCAAATCTTT
1 AATATTTACAAAAAGTAGC-ACCAAATCTTT
84120893 AA
1 AA
84120895 AAAAAATTCA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 2 0.07
30 25 0.93
ACGTcount: A:0.47, C:0.13, G:0.08, T:0.32
Consensus pattern (30 bp):
AATATTTACAAAAAGTAGCACCAAATCTTT
Found at i:84139604 original size:20 final size:20
Alignment explanation
Indices: 84139556--84139606 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
84139546 TGAACCAGGA
* *
84139556 ATATCGATATCTTAGGAAAT
1 ATATCGATACCTTAAGAAAT
*
84139576 ATATAGATACCTTAAGAAA-
1 ATATCGATACCTTAAGAAAT
84139595 AGTATCGATACC
1 A-TATCGATACC
84139607 AGATTGATAC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
19 1 0.04
20 25 0.96
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (20 bp):
ATATCGATACCTTAAGAAAT
Found at i:84140012 original size:16 final size:17
Alignment explanation
Indices: 84139984--84140018 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
84139974 TTAGACAATT
*
84139984 ATAAAAGACAAAATAAA
1 ATAAAAGACAAAAAAAA
84140001 ATAAAA-ACAAAAAAAA
1 ATAAAAGACAAAAAAAA
84140017 AT
1 AT
84140019 TTCATGTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.80, C:0.06, G:0.03, T:0.11
Consensus pattern (17 bp):
ATAAAAGACAAAAAAAA
Found at i:84141620 original size:6 final size:6
Alignment explanation
Indices: 84141609--84142545 Score: 1865
Period size: 6 Copynumber: 156.2 Consensus size: 6
84141599 TTAATGTCCG
84141609 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
1 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
84141657 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
1 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
84141705 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
1 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
84141753 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
1 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
84141801 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
1 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
84141849 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
1 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
84141897 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
1 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
84141945 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
1 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
84141993 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
1 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
84142041 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
1 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
84142089 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
1 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
84142137 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
1 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
84142185 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
1 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
84142233 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
1 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
84142281 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
1 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
84142329 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
1 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
84142377 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
1 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
84142425 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
1 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
84142473 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
1 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
*
84142521 TATGTG TATGTA TATGTA TATGTA T
1 TATGTA TATGTA TATGTA TATGTA T
84142546 GTTTTGGTAA
Statistics
Matches: 929, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 929 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (6 bp):
TATGTA
Found at i:84145058 original size:23 final size:22
Alignment explanation
Indices: 84145003--84145058 Score: 53
Period size: 23 Copynumber: 2.5 Consensus size: 22
84144993 AAAAACAATG
84145003 AAAAT-CTT-TTAAAAAATCAT
1 AAAATACTTATTAAAAAATCAT
* *
84145023 AATATATAATTATTAAAAATATTAT
1 AA-A-ATACTTATTAAAAA-ATCAT
84145048 AAAATACTTAT
1 AAAATACTTAT
84145059 CACTTCTAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
20 2 0.07
21 1 0.04
22 2 0.07
23 9 0.32
24 8 0.29
25 6 0.21
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.39
Consensus pattern (22 bp):
AAAATACTTATTAAAAAATCAT
Found at i:84146775 original size:15 final size:15
Alignment explanation
Indices: 84146755--84146788 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
84146745 ATCTCTAAGA
84146755 ATCTCCATACCAAGT
1 ATCTCCATACCAAGT
84146770 ATCTCCATACCAAGT
1 ATCTCCATACCAAGT
84146785 ATCT
1 ATCT
84146789 TCTTTGTTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.32, C:0.32, G:0.06, T:0.29
Consensus pattern (15 bp):
ATCTCCATACCAAGT
Found at i:84151583 original size:23 final size:23
Alignment explanation
Indices: 84151557--84151604 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
84151547 AAAAAACTAT
84151557 AACCCTCAATGACTCG-ACTCTAA
1 AACCCTCAATGACTCGAACTC-AA
*
84151580 AACCCTCAATGCCTCGAACTCAA
1 AACCCTCAATGACTCGAACTCAA
84151603 AA
1 AA
84151605 TAATTCAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 19 0.83
24 4 0.17
ACGTcount: A:0.38, C:0.35, G:0.08, T:0.19
Consensus pattern (23 bp):
AACCCTCAATGACTCGAACTCAA
Found at i:84154831 original size:7 final size:7
Alignment explanation
Indices: 84154821--84154859 Score: 69
Period size: 7 Copynumber: 5.6 Consensus size: 7
84154811 AAAAAAGGAA
*
84154821 AAAGGTG
1 AAAGTTG
84154828 AAAGTTG
1 AAAGTTG
84154835 AAAGTTG
1 AAAGTTG
84154842 AAAGTTG
1 AAAGTTG
84154849 AAAGTTG
1 AAAGTTG
84154856 AAAG
1 AAAG
84154860 GAGAAAGGAG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.46, C:0.00, G:0.31, T:0.23
Consensus pattern (7 bp):
AAAGTTG
Found at i:84154838 original size:21 final size:21
Alignment explanation
Indices: 84154814--84154872 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
84154804 ATAGAAAAAA
*
84154814 AAAGGAAAAAGGTGAAAGTTG
1 AAAGGAGAAAGGTGAAAGTTG
** *
84154835 AAAGTTGAAAGTTGAAAGTTG
1 AAAGGAGAAAGGTGAAAGTTG
*
84154856 AAAGGAGAAAGGAGAAA
1 AAAGGAGAAAGGTGAAA
84154873 ACTTTGAAAA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.53, C:0.00, G:0.32, T:0.15
Consensus pattern (21 bp):
AAAGGAGAAAGGTGAAAGTTG
Found at i:84154865 original size:14 final size:14
Alignment explanation
Indices: 84154814--84154866 Score: 52
Period size: 14 Copynumber: 3.8 Consensus size: 14
84154804 ATAGAAAAAA
* *
84154814 AAAGGAAAAAGGTG
1 AAAGGAGAAAGTTG
**
84154828 AAAGTTGAAAGTTG
1 AAAGGAGAAAGTTG
**
84154842 AAAGTTGAAAGTTG
1 AAAGGAGAAAGTTG
84154856 AAAGGAGAAAG
1 AAAGGAGAAAG
84154867 GAGAAAACTT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.32, T:0.17
Consensus pattern (14 bp):
AAAGGAGAAAGTTG
Found at i:84157860 original size:44 final size:44
Alignment explanation
Indices: 84157779--84158292 Score: 238
Period size: 44 Copynumber: 11.0 Consensus size: 44
84157769 TTTTAATCCA
* * * *
84157779 CTCCACTGTAATATCAGGGAGATAGGATTACTAGCTTCAATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTG
*
84157823 CTCCGCTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGATGCG
1 CTCCACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATC---T--G
* * * ** * **
84157872 ATCTACTCTATTGTAA-CTTTAGAGAGATAAGATCCTT-T-ATTTTAATCCA
1 --CT-C-C-ACTGTAATC-TCAGGGAGATAAGAT--TTCTGGCTTCAATCTG
* * *
84157921 CTCCACTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTTG
1 CTCCACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTG
*
84157965 CTCCACTGTAATCTCAGGGAAATAAGATTTCTGGCTTCAATCTGATGCG
1 CTCCACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATC---T--G
* ** *
84158014 ATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCATT-T-ATTTTAATCTG
1 --CT-C-C-ACTGTAATC-TCAGGGAGATAAGAT--TTCTGGCTTCAATCTG
* *
84158063 CTCCACTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTG
** * *
84158107 CTCTGCTGTAATTTCAGGGAGATAAGATTTCTGGCTTCAATTTGATGCG
1 CTCCACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAA--T-CT--G
* ** *
84158156 ATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCATT-T-ATTTTAAT-TCG
1 --CT-C-C-ACTGTAATC-TCAGGGAGATAAGAT--TTCTGGCTTCAATCT-G
* * * * *
84158205 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCTATGTG
1 CTCCACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTG
* * * *
84158249 CTCCGCTGTAATCTCAGGAAGATAAGATTTGTGGCTTAAATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTG
84158293 TTTCCTTACA
Statistics
Matches: 352, Mismatches: 69, Indels: 98
0.68 0.13 0.19
Matches are distributed among these distances:
42 3 0.01
43 3 0.01
44 221 0.63
45 7 0.02
46 4 0.01
47 9 0.03
49 6 0.02
50 1 0.00
51 7 0.02
52 4 0.01
53 4 0.01
54 74 0.21
55 3 0.01
56 6 0.02
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.34
Consensus pattern (44 bp):
CTCCACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTG
Found at i:84158018 original size:142 final size:142
Alignment explanation
Indices: 84157765--84158292 Score: 851
Period size: 142 Copynumber: 3.7 Consensus size: 142
84157755 GTTCTTTTCC
*
84157765 TTTATTTTAATCCACTCCACTGTAATATCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCT
1 TTTATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCT
* * *
84157830 GTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTATTGTAACTTTAGA
66 GTAATCTCAGGGAAATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGA
*
84157895 GAGATAAGATCC
131 GAGATAAGATCA
* * *
84157907 TTTATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCACT
1 TTTATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCT
84157972 GTAATCTCAGGGAAATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGA
66 GTAATCTCAGGGAAATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGA
84158037 GAGATAAGATCA
131 GAGATAAGATCA
** * *
84158049 TTTATTTTAATCTGCTCCACTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCTGCT
1 TTTATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCT
* * *
84158114 GTAATTTCAGGGAGATAAGATTTCTGGCTTCAATTTGATGCGATCTACTCTACTGTAACTTCAGA
66 GTAATCTCAGGGAAATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGA
84158179 GAGATAAGATCA
131 GAGATAAGATCA
* * * *
84158191 TTTATTTTAATTCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCTATGTGCTCCGCT
1 TTTATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCT
* *
84158256 GTAATCTCA-GGAAGATAAGATTTGTGGCTTAAATCTG
66 GTAATCTCAGGGAA-ATAAGATTTCTGGCTTCAATCTG
84158293 TTTCCTTACA
Statistics
Matches: 358, Mismatches: 27, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
141 3 0.01
142 355 0.99
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.34
Consensus pattern (142 bp):
TTTATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCT
GTAATCTCAGGGAAATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGA
GAGATAAGATCA
Found at i:84158041 original size:98 final size:98
Alignment explanation
Indices: 84157920--84158106 Score: 241
Period size: 98 Copynumber: 1.9 Consensus size: 98
84157910 ATTTTAATCC
* * * * *
84157920 ACTCCACTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCACTGTAATCTCAGGGA
1 ACTCCACTGTAATCTCAGAGAGATAAGATCACTGACTTCAATCTGCTCCACTGTAATCTCAGGGA
*
84157985 AATAAGATTTCTGGCTTCAATCTGATGCGATCT
66 AATAAGATTACTGGCTTCAATCTGATGCGATCT
* * * * *
84158018 ACTCTACTGTAA-CTTCAGAGAGATAAGATCATTTATTTTAATCTGCTCCACTGTAATCTCAGGG
1 ACTCCACTGTAATC-TCAGAGAGATAAGATCACTGACTTCAATCTGCTCCACTGTAATCTCAGGG
* *
84158082 AGATAGGATTACTGGCTTCAATCTG
65 AAATAAGATTACTGGCTTCAATCTG
84158107 CTCTGCTGTA
Statistics
Matches: 75, Mismatches: 13, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
97 1 0.01
98 74 0.99
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (98 bp):
ACTCCACTGTAATCTCAGAGAGATAAGATCACTGACTTCAATCTGCTCCACTGTAATCTCAGGGA
AATAAGATTACTGGCTTCAATCTGATGCGATCT
Found at i:84163625 original size:38 final size:38
Alignment explanation
Indices: 84163574--84163650 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
84163564 ACCCATCGCT
84163574 TAGGGTAAACACAAAGGATTTAGATATGTGAGGGAAGG
1 TAGGGTAAACACAAAGGATTTAGATATGTGAGGGAAGG
84163612 TAGGGTAAACACAAAGGATTTAGATATGTGAGGGAAGG
1 TAGGGTAAACACAAAGGATTTAGATATGTGAGGGAAGG
84163650 T
1 T
84163651 CAAAGGCTCC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.39, C:0.05, G:0.34, T:0.22
Consensus pattern (38 bp):
TAGGGTAAACACAAAGGATTTAGATATGTGAGGGAAGG
Found at i:84171918 original size:15 final size:17
Alignment explanation
Indices: 84171898--84171929 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
84171888 ACAAAATAAG
84171898 AATAA-TTAAT-ACAAA
1 AATAATTTAATCACAAA
84171913 AATAATTTAATCACAAA
1 AATAATTTAATCACAAA
84171930 TAACCAACCA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.33
16 5 0.33
17 5 0.33
ACGTcount: A:0.62, C:0.09, G:0.00, T:0.28
Consensus pattern (17 bp):
AATAATTTAATCACAAA
Found at i:84172219 original size:23 final size:23
Alignment explanation
Indices: 84172192--84172288 Score: 56
Period size: 24 Copynumber: 4.2 Consensus size: 23
84172182 AAAATAAAGT
84172192 AAATAGAAAATACAATAGACTTA
1 AAATAGAAAATACAATAGACTTA
* * ** *
84172215 AAATATTAATATGTAAT-GCATTTA
1 AAATA-GAAAATACAATAG-ACTTA
* * * **
84172239 AAACAAAAAATAAAAATA-AAGTA
1 AAATAGAAAAT-ACAATAGACTTA
84172262 -AATAGAAAATACAATAGACTTA
1 AAATAGAAAATACAATAGACTTA
84172284 AAATA
1 AAATA
84172289 TTAATATGTA
Statistics
Matches: 51, Mismatches: 17, Indels: 12
0.64 0.21 0.15
Matches are distributed among these distances:
21 5 0.10
22 11 0.22
23 17 0.33
24 18 0.35
ACGTcount: A:0.62, C:0.06, G:0.07, T:0.25
Consensus pattern (23 bp):
AAATAGAAAATACAATAGACTTA
Found at i:84172255 original size:69 final size:69
Alignment explanation
Indices: 84172182--84172318 Score: 265
Period size: 69 Copynumber: 2.0 Consensus size: 69
84172172 AATAGTATAT
84172182 AAAATAAAGTAAATAGAAAATACAATAGACTTAAAATATTAATATGTAATGCATTTAAAACAAAA
1 AAAATAAAGTAAATAGAAAATACAATAGACTTAAAATATTAATATGTAATGCATTTAAAACAAAA
84172247 AATA
66 AATA
*
84172251 AAAATAAAGTAAATAGAAAATACAATAGACTTAAAATATTAATATGTAATGCATTTAAAACACAA
1 AAAATAAAGTAAATAGAAAATACAATAGACTTAAAATATTAATATGTAATGCATTTAAAACAAAA
84172316 AAT
66 AAT
84172319 CCAAACTAAA
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 67 1.00
ACGTcount: A:0.60, C:0.07, G:0.07, T:0.26
Consensus pattern (69 bp):
AAAATAAAGTAAATAGAAAATACAATAGACTTAAAATATTAATATGTAATGCATTTAAAACAAAA
AATA
Found at i:84173987 original size:12 final size:12
Alignment explanation
Indices: 84173960--84173994 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
84173950 ATTTACAAAA
*
84173960 TTAATAAATGATT
1 TTAAT-AATAATT
84173973 TTAATAATAATT
1 TTAATAATAATT
84173985 TTAATAATAA
1 TTAATAATAA
84173995 ATAATTAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 16 0.76
13 5 0.24
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (12 bp):
TTAATAATAATT
Found at i:84176981 original size:12 final size:12
Alignment explanation
Indices: 84176951--84176984 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
84176941 ATTCTTTTCC
*
84176951 TATTCCCATTCG
1 TATTCCTATTCG
84176963 TATTCCTATTCG
1 TATTCCTATTCG
84176975 TATTCCTATT
1 TATTCCTATT
84176985 ACTCCATCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.18, C:0.26, G:0.06, T:0.50
Consensus pattern (12 bp):
TATTCCTATTCG
Found at i:84178996 original size:16 final size:15
Alignment explanation
Indices: 84178949--84179000 Score: 59
Period size: 16 Copynumber: 3.3 Consensus size: 15
84178939 AAATATATAT
*
84178949 TTTTCCATCTTTTCAT
1 TTTTCCATCTTTT-AA
* *
84178965 TTTTCTACCTTTTAA
1 TTTTCCATCTTTTAA
84178980 TTTTCCATCTTTCTAA
1 TTTTCCATCTTT-TAA
84178996 TTTTC
1 TTTTC
84179001 TTTCCATTCT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
15 11 0.37
16 19 0.63
ACGTcount: A:0.15, C:0.23, G:0.00, T:0.62
Consensus pattern (15 bp):
TTTTCCATCTTTTAA
Found at i:84186640 original size:10 final size:9
Alignment explanation
Indices: 84186625--84186804 Score: 73
Period size: 10 Copynumber: 18.8 Consensus size: 9
84186615 ATAAAATTCA
*
84186625 ATAAAAGTT
1 ATAAAAATT
84186634 ATAAAAATT
1 ATAAAAATT
**
84186643 ATTAAATTTT
1 A-TAAAAATT
84186653 AATAAAAAATGT
1 -AT-AAAAAT-T
84186665 -TAAAATATT
1 ATAAAA-ATT
84186674 ATTAAAAATT
1 A-TAAAAATT
*
84186684 AAAAAAATT
1 ATAAAAATT
* *
84186693 GTAAAATTTT
1 ATAAAA-ATT
84186703 ATAAAAATCGT
1 ATAAAAAT--T
84186714 A-AAAAATT
1 ATAAAAATT
84186722 AT-AAAATAT
1 ATAAAAAT-T
*
84186731 ATAGAAA-T
1 ATAAAAATT
84186739 ATATAAAATT
1 ATA-AAAATT
* *
84186749 TTATAAAGTT
1 ATA-AAAATT
*
84186759 GTAAGAAAATT
1 AT-A-AAAATT
*
84186770 ATAAAAAAT
1 ATAAAAATT
*
84186779 ATAAAGAAAT
1 ATAAA-AATT
84186789 AT-AAAATT
1 ATAAAAATT
84186797 AGTAAAAA
1 A-TAAAAA
84186805 ATTAAAATTA
Statistics
Matches: 131, Mismatches: 21, Indels: 37
0.69 0.11 0.20
Matches are distributed among these distances:
8 15 0.11
9 45 0.34
10 51 0.39
11 19 0.15
12 1 0.01
ACGTcount: A:0.61, C:0.01, G:0.06, T:0.33
Consensus pattern (9 bp):
ATAAAAATT
Found at i:84186657 original size:20 final size:21
Alignment explanation
Indices: 84186634--84186684 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
84186624 AATAAAAGTT
*
84186634 ATAAAAATTATT-AAATTTTA
1 ATAAAAATTATTAAAATATTA
* *
84186654 ATAAAAAATGTTAAAATATTA
1 ATAAAAATTATTAAAATATTA
*
84186675 TTAAAAATTA
1 ATAAAAATTA
84186685 AAAAAATTGT
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
20 10 0.42
21 14 0.58
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (21 bp):
ATAAAAATTATTAAAATATTA
Found at i:84186688 original size:48 final size:48
Alignment explanation
Indices: 84186625--84186796 Score: 149
Period size: 48 Copynumber: 3.5 Consensus size: 48
84186615 ATAAAATTCA
* *
84186625 ATAAAAGT-TATAAAAATTATTAAATTTTAATAAAAAAT-GTTAAAATATT
1 ATAAAA-TATATAAAAATTATAAAATTTT-ATAAAAAATCG-TAAAAAATT
* *
84186674 ATTAAAA-ATTAAAAAAATTGTAAAATTTTAT-AAAAATCGTAAAAAATT
1 A-TAAAATA-TATAAAAATTATAAAATTTTATAAAAAATCGTAAAAAATT
* * *
84186722 ATAAAATATATAGAAATATATAAAATTTTAT--AAAGTTGTAAGAAAATT
1 ATAAAATATATAAAAAT-TATAAAATTTTATAAAAAATCGTAA-AAAATT
* *
84186770 ATAAAAAATATAAAGAAATATAAAATT
1 ATAAAATATATAAA-AATTATAAAATT
84186797 AGTAAAAAAT
Statistics
Matches: 103, Mismatches: 12, Indels: 17
0.78 0.09 0.13
Matches are distributed among these distances:
47 20 0.19
48 55 0.53
49 6 0.06
50 22 0.21
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.34
Consensus pattern (48 bp):
ATAAAATATATAAAAATTATAAAATTTTATAAAAAATCGTAAAAAATT
Found at i:84186710 original size:19 final size:19
Alignment explanation
Indices: 84186677--84186727 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 19
84186667 AAATATTATT
* *
84186677 AAAAATTAAAAAAATTGTA
1 AAAAATTATAAAAATCGTA
**
84186696 AAATTTTATAAAAATCGTA
1 AAAAATTATAAAAATCGTA
84186715 AAAAATTATAAAA
1 AAAAATTATAAAA
84186728 TATATAGAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (19 bp):
AAAAATTATAAAAATCGTA
Found at i:84186745 original size:29 final size:28
Alignment explanation
Indices: 84186654--84186808 Score: 81
Period size: 29 Copynumber: 5.4 Consensus size: 28
84186644 TTAAATTTTA
84186654 ATAAAAAATGT-TAAAATATTATTAAAA-AT
1 ATAAAAAAT-TATAAAATA-TA-TAAAATAT
* *
84186683 -TAAAAAAATTGTAAAATTTTATAAAA-AT
1 AT-AAAAAATTATAAAA-TATATAAAATAT
*
84186711 CGTAAAAAATTATAAAATATATAGAAATAT
1 -ATAAAAAATTATAAAATATATA-AAATAT
** * * *
84186741 ATAAAATTTTATAAAGT-TGTAAGAAAATT
1 ATAAAAAATTATAAAATATATAA-AATA-T
*
84186770 ATAAAAAA-TATAAAGAAATATAAAAT-T
1 ATAAAAAATTATAAA-ATATATAAAATAT
84186797 AGTAAAAAATTA
1 A-TAAAAAATTA
84186809 AAATTATCGT
Statistics
Matches: 98, Mismatches: 15, Indels: 26
0.71 0.11 0.19
Matches are distributed among these distances:
27 3 0.03
28 33 0.34
29 54 0.55
30 8 0.08
ACGTcount: A:0.61, C:0.01, G:0.06, T:0.32
Consensus pattern (28 bp):
ATAAAAAATTATAAAATATATAAAATAT
Found at i:84186810 original size:17 final size:19
Alignment explanation
Indices: 84186780--84186814 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
84186770 ATAAAAAATA
84186780 TAAAGAAATATAAAATTAG
1 TAAAGAAATATAAAATTAG
84186799 TAAA-AAAT-TAAAATTA
1 TAAAGAAATATAAAATTA
84186815 TCGTACCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 4 0.25
19 4 0.25
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.29
Consensus pattern (19 bp):
TAAAGAAATATAAAATTAG
Found at i:84187294 original size:32 final size:31
Alignment explanation
Indices: 84187249--84187344 Score: 174
Period size: 31 Copynumber: 3.1 Consensus size: 31
84187239 CTTAGATAAT
84187249 TTTAAAGAGTTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTATTAGGATTCAATTACTC
84187280 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
1 TTTAAAGAG-TTTTATTAGGATTCAATTACTC
*
84187312 TTGAAAGAGTTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTATTAGGATTCAATTACTC
84187343 TT
1 TT
84187345 GTAATTTGCC
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
31 33 0.52
32 30 0.48
ACGTcount: A:0.31, C:0.09, G:0.14, T:0.46
Consensus pattern (31 bp):
TTTAAAGAGTTTTATTAGGATTCAATTACTC
Found at i:84193473 original size:31 final size:32
Alignment explanation
Indices: 84193428--84193490 Score: 119
Period size: 31 Copynumber: 2.0 Consensus size: 32
84193418 AGATAATTTT
84193428 AAAGAGTTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTTATTAGGATTCAATTACTCTTG
84193460 AAAGAG-TTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTTATTAGGATTCAATTACTCTTG
84193491 TAATTTGCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 25 0.81
32 6 0.19
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.43
Consensus pattern (32 bp):
AAAGAGTTTTTATTAGGATTCAATTACTCTTG
Found at i:84199615 original size:31 final size:32
Alignment explanation
Indices: 84199570--84199632 Score: 119
Period size: 31 Copynumber: 2.0 Consensus size: 32
84199560 AGATAATTTT
84199570 AAAGAGTTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTTATTAGGATTCAATTACTCTTG
84199602 AAAGAG-TTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTTATTAGGATTCAATTACTCTTG
84199633 TAATTTGCCA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 25 0.81
32 6 0.19
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.43
Consensus pattern (32 bp):
AAAGAGTTTTTATTAGGATTCAATTACTCTTG
Found at i:84200126 original size:10 final size:10
Alignment explanation
Indices: 84200113--84200220 Score: 52
Period size: 9 Copynumber: 11.3 Consensus size: 10
84200103 TTTTGATGCA
84200113 TTTTATAAAT
1 TTTTATAAAT
*
84200123 TTTT-TATGAT
1 TTTTATA-AAT
* *
84200133 ATTAATACAA-
1 TTTTATA-AAT
84200143 TTTTAT-AAT
1 TTTTATAAAT
*
84200152 TTTTA-ATAT
1 TTTTATAAAT
**
84200161 TTTTA-CGAT
1 TTTTATAAAT
84200170 TTTTAT-AAT
1 TTTTATAAAT
*
84200179 TTTTA-ATAT
1 TTTTATAAAT
*
84200188 TTTTATTAAAA
1 TTTTA-TAAAT
*
84200199 TTTAAT-AAT
1 TTTTATAAAT
84200208 TTTTATAAAT
1 TTTTATAAAT
84200218 TTT
1 TTT
84200221 ATTTATTTTT
Statistics
Matches: 72, Mismatches: 17, Indels: 18
0.67 0.16 0.17
Matches are distributed among these distances:
8 2 0.03
9 42 0.58
10 19 0.26
11 9 0.12
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (10 bp):
TTTTATAAAT
Found at i:84200189 original size:18 final size:18
Alignment explanation
Indices: 84200141--84200232 Score: 71
Period size: 19 Copynumber: 5.0 Consensus size: 18
84200131 ATATTAATAC
*
84200141 AATTTTATAAT-TTTTAAT
1 AATTTT-TAATATTTTTAT
**
84200159 -ATTTTTACGATTTTTAT
1 AATTTTTAATATTTTTAT
84200176 AATTTTTAATATTTTTATT
1 AATTTTTAATATTTTTA-T
**
84200195 AAAATTTAATAATTTTTAT
1 AATTTTTAAT-ATTTTTAT
* *
84200214 AAATTTTATTTATTTTTAT
1 AATTTTTA-ATATTTTTAT
84200233 TTTTTATAAT
Statistics
Matches: 60, Mismatches: 9, Indels: 9
0.77 0.12 0.12
Matches are distributed among these distances:
16 2 0.03
17 11 0.18
18 14 0.23
19 25 0.42
20 8 0.13
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.63
Consensus pattern (18 bp):
AATTTTTAATATTTTTAT
Found at i:84200191 original size:19 final size:18
Alignment explanation
Indices: 84200168--84200232 Score: 76
Period size: 19 Copynumber: 3.4 Consensus size: 18
84200158 TATTTTTACG
*
84200168 ATTTTTATAATTTTTAAT
1 ATTTTTATAAATTTTAAT
*
84200186 ATTTTTATTAAAATTTAAT
1 ATTTTTA-TAAATTTTAAT
*
84200205 AATTTTTATAAATTTTATTT
1 -ATTTTTATAAATTTTA-AT
84200225 ATTTTTAT
1 ATTTTTAT
84200233 TTTTTATAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
18 7 0.17
19 25 0.62
20 8 0.20
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
ATTTTTATAAATTTTAAT
Found at i:84200247 original size:10 final size:9
Alignment explanation
Indices: 84200143--84200246 Score: 81
Period size: 9 Copynumber: 11.4 Consensus size: 9
84200133 ATTAATACAA
84200143 TTTTATAAT
1 TTTTATAAT
84200152 TTTTA-ATAT
1 TTTTATA-AT
**
84200161 TTTTACGAT
1 TTTTATAAT
84200170 TTTTATAAT
1 TTTTATAAT
84200179 TTTTA-ATAT
1 TTTTATA-AT
*
84200188 TTTTATTAAAA
1 TTTTA-T-AAT
*
84200199 TTTAATAAT
1 TTTTATAAT
*
84200208 TTTTATAAA
1 TTTTATAAT
*
84200217 TTTTATTTAT
1 TTTTA-TAAT
84200227 TTTTAT--T
1 TTTTATAAT
84200234 TTTTATAAT
1 TTTTATAAT
84200243 TTTT
1 TTTT
84200247 TGCCACATGT
Statistics
Matches: 76, Mismatches: 10, Indels: 18
0.73 0.10 0.17
Matches are distributed among these distances:
7 7 0.09
8 2 0.03
9 53 0.70
10 8 0.11
11 5 0.07
12 1 0.01
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.66
Consensus pattern (9 bp):
TTTTATAAT
Found at i:84203174 original size:165 final size:165
Alignment explanation
Indices: 84202895--84203883 Score: 1899
Period size: 165 Copynumber: 6.0 Consensus size: 165
84202885 GAAGCCCAAC
* * * *
84202895 ATCATCTCCATGCCTGAAAGAACTGGTTTGAATTTCTTGTCCATGTTTAACAATTTCCTGGTAGC
1 ATCATCCCCATGCCTGAAAGAACTGGTTTGCATTTCTTGTCCATGTTTAACACTTTCCCGGTAGC
* *
84202960 TCTGCTCATTTCCAGACTTTGACATATACTGCATTCTTCCCAGCCTGTCCCTTCCATTATCAAAA
66 TCTGCTCAATTCCAGACTTTGACATATATTGCATTCTTCCCAGCCTGTCCCTTCCATTATCAAAA
84203025 GTGGATGTAGTGGAGACGACTATTGGTACATCAAT
131 GTGGATGTAGTGGAGACGACTATTGGTACATCAAT
84203060 ATCATCCCCATGCCTGAAAGAACTGGTTTGCATTTCTTGTCCATGTTTAACACTTTCCCGGTAGC
1 ATCATCCCCATGCCTGAAAGAACTGGTTTGCATTTCTTGTCCATGTTTAACACTTTCCCGGTAGC
84203125 TCTGCTCAATTCCAGACTTTGACATATATTGCATTCTTCCCAGCCTGTCCCTTCCATTATCAAAA
66 TCTGCTCAATTCCAGACTTTGACATATATTGCATTCTTCCCAGCCTGTCCCTTCCATTATCAAAA
84203190 GTGGATGTAGTGGAGACGACTATTGGTACATCAAT
131 GTGGATGTAGTGGAGACGACTATTGGTACATCAAT
84203225 ATCATCCCCATGCCTGAAAGAACTGGTTTGCATTTCTTGTCCATGTTTAACACTTTCCCGGTAGC
1 ATCATCCCCATGCCTGAAAGAACTGGTTTGCATTTCTTGTCCATGTTTAACACTTTCCCGGTAGC
84203290 TCTGCTCAATTCCAGACTTTGACATATATTGCATTCTTCCCAGCCTGTCCCTTCCATTATCAAAA
66 TCTGCTCAATTCCAGACTTTGACATATATTGCATTCTTCCCAGCCTGTCCCTTCCATTATCAAAA
84203355 GTGGATGTAGTGGAGACGACTATTGGTACATCAAT
131 GTGGATGTAGTGGAGACGACTATTGGTACATCAAT
84203390 ATCATCCCCATGCCTGAAAGAACTGGTTTGCATTTCTTGTCCATGTTTAACACTTTCCCGGTAGC
1 ATCATCCCCATGCCTGAAAGAACTGGTTTGCATTTCTTGTCCATGTTTAACACTTTCCCGGTAGC
84203455 TCTGCTCAATTCCAGACTTTGACATATATTGCATTCTTCCCAGCCTGTCCCTTCCATTATCAAAA
66 TCTGCTCAATTCCAGACTTTGACATATATTGCATTCTTCCCAGCCTGTCCCTTCCATTATCAAAA
84203520 GTGGATGTAGTGGAGACGACTATTGGTACATCAAT
131 GTGGATGTAGTGGAGACGACTATTGGTACATCAAT
84203555 ATCATCCCCATGCCTGAAAGAACTGGTTTGCATTTCTTGTCCATGTTTAACACTTTCCCGGTAGC
1 ATCATCCCCATGCCTGAAAGAACTGGTTTGCATTTCTTGTCCATGTTTAACACTTTCCCGGTAGC
84203620 TCTGCTCAATTCCAGACTTTGACATATATTGCATTCTTCCCAGCCTGTCCCTTCCATTATCAAAA
66 TCTGCTCAATTCCAGACTTTGACATATATTGCATTCTTCCCAGCCTGTCCCTTCCATTATCAAAA
84203685 GTGGATGTAGTGGAGACGACTATTGGTACATCAAT
131 GTGGATGTAGTGGAGACGACTATTGGTACATCAAT
84203720 ATCATCCCCATGCCTGAAAGAACTGGTTTGCATTTCTTGTCCATGTTTAACACTTTCCCGGTAGC
1 ATCATCCCCATGCCTGAAAGAACTGGTTTGCATTTCTTGTCCATGTTTAACACTTTCCCGGTAGC
84203785 TCTGCTCAATTCCAGACTTTGACATATATTGCATTCTTCCCAGCCTGTCCCTTCCATTATCAAAA
66 TCTGCTCAATTCCAGACTTTGACATATATTGCATTCTTCCCAGCCTGTCCCTTCCATTATCAAAA
*
84203850 GCAGG-TGTAGTGGAGACGACTATTGGTACATCAA
131 G-TGGATGTAGTGGAGACGACTATTGGTACATCAA
84203884 ACGGAGTTTC
Statistics
Matches: 816, Mismatches: 7, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
165 814 1.00
166 2 0.00
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.33
Consensus pattern (165 bp):
ATCATCCCCATGCCTGAAAGAACTGGTTTGCATTTCTTGTCCATGTTTAACACTTTCCCGGTAGC
TCTGCTCAATTCCAGACTTTGACATATATTGCATTCTTCCCAGCCTGTCCCTTCCATTATCAAAA
GTGGATGTAGTGGAGACGACTATTGGTACATCAAT
Found at i:84206790 original size:20 final size:22
Alignment explanation
Indices: 84206765--84206805 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
84206755 CCTTTATTTT
84206765 AGAGAG-AA-AAATGAAGAATG
1 AGAGAGCAACAAATGAAGAATG
84206785 AGAGAGCCAACAAATGAAGAA
1 AGAGAG-CAACAAATGAAGAA
84206806 AGGTTGCTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.33
22 2 0.11
23 10 0.56
ACGTcount: A:0.59, C:0.07, G:0.27, T:0.07
Consensus pattern (22 bp):
AGAGAGCAACAAATGAAGAATG
Found at i:84208552 original size:29 final size:29
Alignment explanation
Indices: 84208489--84208544 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
84208479 ACAAATTTAA
* *
84208489 ATAATTGGGTAACCATTTTGTAAGCTTTC
1 ATAATTAGGTAACCATTTTATAAGCTTTC
*
84208518 ATAATTAGGTGACCATTTTATAA-CTTT
1 ATAATTAGGTAACCATTTTATAAGCTTT
84208545 TGATAATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 4 0.17
29 20 0.83
ACGTcount: A:0.30, C:0.12, G:0.14, T:0.43
Consensus pattern (29 bp):
ATAATTAGGTAACCATTTTATAAGCTTTC
Found at i:84210152 original size:9 final size:9
Alignment explanation
Indices: 84210140--84210358 Score: 89
Period size: 9 Copynumber: 23.9 Consensus size: 9
84210130 TTTATGATTT
84210140 TTTTTATAA
1 TTTTTATAA
84210149 TTTTTATAAA
1 TTTTTAT-AA
*
84210159 TTTATATTAA
1 TTTTTA-TAA
* *
84210169 TTTTAATAC
1 TTTTTATAA
** *
84210178 TTTAAATAT
1 TTTTTATAA
*
84210187 TTTTTATGA
1 TTTTTATAA
84210196 TTTTTATAGAA
1 TTTTTAT--AA
*
84210207 TTTTAATACGA
1 TTTTTATA--A
84210218 -TTTTATAAA
1 TTTTTAT-AA
* *
84210227 ATTTTAAATA
1 TTTTTATA-A
84210237 TATTTTACTAA
1 T-TTTTA-TAA
84210248 --TTTATAA
1 TTTTTATAA
84210255 TTTTTATAA
1 TTTTTATAA
*
84210264 TTTATTAGAA
1 TTT-TTATAA
*
84210274 TTTTTAT-G
1 TTTTTATAA
84210282 TTTTTATAA
1 TTTTTATAA
*
84210291 -TTTTA-AG
1 TTTTTATAA
*
84210298 TTTATATCAA
1 TTTTTAT-AA
*
84210308 TTTTCAT-A
1 TTTTTATAA
84210316 TTCTTT-TAA
1 TT-TTTATAA
*
84210325 TATTTT-TAT
1 T-TTTTATAA
*
84210334 TTTTTAT-T
1 TTTTTATAA
84210342 TTTTTATAA
1 TTTTTATAA
84210351 TTTTTATA
1 TTTTTATA
84210359 GAAAAAATAT
Statistics
Matches: 159, Mismatches: 28, Indels: 46
0.68 0.12 0.20
Matches are distributed among these distances:
7 4 0.03
8 36 0.23
9 63 0.40
10 39 0.25
11 16 0.10
12 1 0.01
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (9 bp):
TTTTTATAA
Found at i:84210294 original size:17 final size:16
Alignment explanation
Indices: 84210248--84210358 Score: 64
Period size: 17 Copynumber: 6.4 Consensus size: 16
84210238 ATTTTACTAA
84210248 TTTATAATTTTTATAATT
1 TTTATAATTTTTAT--TT
*
84210266 TATTAGAATTTTTATGTT
1 T-TTATAATTTTTAT-TT
* *
84210284 TTTATAATTTTAAGTT
1 TTTATAATTTTTATTT
*
84210300 TATATCAATTTTCATATTCT
1 TTTAT-AATTTT--TATT-T
84210320 TTTA-ATATTTTTATTT
1 TTTATA-ATTTTTATTT
*
84210336 TTTAT-TTTTTTATAATT
1 TTTATAATTTTTAT--TT
84210353 TTTATA
1 TTTATA
84210359 GAAAAAATAT
Statistics
Matches: 73, Mismatches: 10, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
15 7 0.10
16 11 0.15
17 27 0.37
18 5 0.07
19 19 0.26
20 4 0.05
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.66
Consensus pattern (16 bp):
TTTATAATTTTTATTT
Found at i:84210762 original size:7 final size:7
Alignment explanation
Indices: 84210750--84210781 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
84210740 GCGTCTGTCA
84210750 GCCCTAT
1 GCCCTAT
84210757 GCCCTAT
1 GCCCTAT
84210764 GCCCTAT
1 GCCCTAT
84210771 GCCCTAT
1 GCCCTAT
84210778 GCCC
1 GCCC
84210782 ATCATAATCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.12, C:0.47, G:0.16, T:0.25
Consensus pattern (7 bp):
GCCCTAT
Found at i:84212772 original size:85 final size:85
Alignment explanation
Indices: 84212647--84212905 Score: 500
Period size: 85 Copynumber: 3.0 Consensus size: 85
84212637 GACCATAGGG
* *
84212647 AACCGCAAAATATAAAGAAATCAGCAGATAGGAAAAATATATATTAAGCCACTGCAAGCATATAC
1 AACCGCAAAATATAAAGAAATCAGCAGATAGGAAAAATATATCTTAAGCCACTGCAAGCATGTAC
84212712 AAAATGTGAGAACAAAGATA
66 AAAATGTGAGAACAAAGATA
84212732 AACCGCAAAATATAAAGAAATCAGCAGATAGGAAAAATATATCTTAAGCCACTGCAAGCATGTAC
1 AACCGCAAAATATAAAGAAATCAGCAGATAGGAAAAATATATCTTAAGCCACTGCAAGCATGTAC
84212797 AAAATGTGAGAACAAAGATA
66 AAAATGTGAGAACAAAGATA
84212817 AACCGCAAAATATAAAGAAATCAGCAGATAGGAAAAATATATCTTAAGCCACTGCAAGCATGTAC
1 AACCGCAAAATATAAAGAAATCAGCAGATAGGAAAAATATATCTTAAGCCACTGCAAGCATGTAC
84212882 AAAATGTGAGAACAAAGATA
66 AAAATGTGAGAACAAAGATA
84212902 AACC
1 AACC
84212906 AGGAGTGCAA
Statistics
Matches: 172, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 172 1.00
ACGTcount: A:0.51, C:0.15, G:0.16, T:0.17
Consensus pattern (85 bp):
AACCGCAAAATATAAAGAAATCAGCAGATAGGAAAAATATATCTTAAGCCACTGCAAGCATGTAC
AAAATGTGAGAACAAAGATA
Found at i:84214617 original size:23 final size:22
Alignment explanation
Indices: 84214585--84214632 Score: 78
Period size: 22 Copynumber: 2.1 Consensus size: 22
84214575 AATAAATATC
*
84214585 AAAAATTTATTTTAAAAATTAAA
1 AAAAAATTATTTT-AAAATTAAA
84214608 AAAAAATTATTTTAAAATTAAA
1 AAAAAATTATTTTAAAATTAAA
84214630 AAA
1 AAA
84214633 TTTTTAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 12 0.50
23 12 0.50
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (22 bp):
AAAAAATTATTTTAAAATTAAA
Found at i:84214655 original size:11 final size:11
Alignment explanation
Indices: 84214641--84214666 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
84214631 AATTTTTAAA
84214641 AAAAGTATTTT
1 AAAAGTATTTT
84214652 AAAAGTATTTT
1 AAAAGTATTTT
84214663 AAAA
1 AAAA
84214667 TTAAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (11 bp):
AAAAGTATTTT
Found at i:84216614 original size:61 final size:60
Alignment explanation
Indices: 84216510--84216623 Score: 147
Period size: 61 Copynumber: 1.9 Consensus size: 60
84216500 TTTTTTGAAA
** * **
84216510 TTTTTAGAATTAGTATTAAATTAACAAATTTTGCAAATGTTGATAGCTAAATTTATTGAGT
1 TTTTTAGAATTAAAATTAAAATAACAAATTTTGCAAACATTGAT-GCTAAATTTATTGAGT
* * *
84216571 TTTTTAGAATTAAAATTAAAATGACAAATTTTGTAAACATTGATGCTCAATTT
1 TTTTTAGAATTAAAATTAAAATAACAAATTTTGCAAACATTGATGCTAAATTT
84216624 GTTTAATTTT
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
60 8 0.18
61 37 0.82
ACGTcount: A:0.39, C:0.06, G:0.11, T:0.43
Consensus pattern (60 bp):
TTTTTAGAATTAAAATTAAAATAACAAATTTTGCAAACATTGATGCTAAATTTATTGAGT
Found at i:84217138 original size:29 final size:29
Alignment explanation
Indices: 84217106--84217161 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
84217096 ACCAATAGAA
*
84217106 GCCGTTTTTTTCAAAATTTACCGAAATAG
1 GCCGATTTTTTCAAAATTTACCGAAATAG
* **
84217135 GCCGATTTTTTGATTATTTACCGAAAT
1 GCCGATTTTTTCAAAATTTACCGAAAT
84217162 GATCCATTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (29 bp):
GCCGATTTTTTCAAAATTTACCGAAATAG
Found at i:84217529 original size:51 final size:51
Alignment explanation
Indices: 84217448--84217569 Score: 183
Period size: 51 Copynumber: 2.4 Consensus size: 51
84217438 ATATTTCCTC
*
84217448 TCAATTTCCT-TCCAAATTTCCTTTCAAAATTCTCTCAAACCCATATTTAATT
1 TCAATTTCCTCT-C-AATTTCCTTCCAAAATTCTCTCAAACCCATATTTAATT
**
84217500 TCAATTTCCTCTCAATTTCCTTCCAAAATTCTCTCAAATTCATATTTAATT
1 TCAATTTCCTCTCAATTTCCTTCCAAAATTCTCTCAAACCCATATTTAATT
*
84217551 TCAATTTCCCCTCAATTTC
1 TCAATTTCCTCTCAATTTC
84217570 ATTTTTTAAA
Statistics
Matches: 65, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
51 53 0.82
52 11 0.17
53 1 0.02
ACGTcount: A:0.29, C:0.28, G:0.00, T:0.43
Consensus pattern (51 bp):
TCAATTTCCTCTCAATTTCCTTCCAAAATTCTCTCAAACCCATATTTAATT
Found at i:84217604 original size:10 final size:10
Alignment explanation
Indices: 84217584--84217635 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
84217574 TTTAAAATAA
84217584 TTTAAATTTTT
1 TTTAAA-TTTT
*
84217595 TTTATATTTT
1 TTTAAATTTT
**
84217605 TTTAAAATAAT
1 TTT-AAATTTT
84217616 TTTAAATTTT
1 TTTAAATTTT
*
84217626 TTTATATTTT
1 TTTAAATTTT
84217636 CATCAATGGC
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
10 21 0.64
11 12 0.36
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (10 bp):
TTTAAATTTT
Found at i:84217609 original size:31 final size:31
Alignment explanation
Indices: 84217571--84217635 Score: 114
Period size: 31 Copynumber: 2.1 Consensus size: 31
84217561 CTCAATTTCA
84217571 TTTTTTAAAATAA-TTTAAATTTTTTTTATAT
1 TTTTTTAAAATAATTTTAAA-TTTTTTTATAT
84217602 TTTTTTAAAATAATTTTAAATTTTTTTATAT
1 TTTTTTAAAATAATTTTAAATTTTTTTATAT
84217633 TTT
1 TTT
84217636 CATCAATGGC
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
31 27 0.82
32 6 0.18
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (31 bp):
TTTTTTAAAATAATTTTAAATTTTTTTATAT
Found at i:84218729 original size:7 final size:7
Alignment explanation
Indices: 84218717--84218741 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
84218707 AGTCAATTGA
84218717 TATTTAG
1 TATTTAG
84218724 TATTTAG
1 TATTTAG
84218731 TATTTAG
1 TATTTAG
84218738 TATT
1 TATT
84218742 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:84219414 original size:18 final size:18
Alignment explanation
Indices: 84219393--84219427 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
84219383 AGGTATGTTT
* *
84219393 CCTAGCCCTTATATGTAC
1 CCTAACCCTTACATGTAC
84219411 CCTAACCCTTACATGTA
1 CCTAACCCTTACATGTA
84219428 TCCTTTTCCG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.34, G:0.09, T:0.31
Consensus pattern (18 bp):
CCTAACCCTTACATGTAC
Found at i:84219997 original size:17 final size:18
Alignment explanation
Indices: 84219941--84220010 Score: 79
Period size: 23 Copynumber: 3.7 Consensus size: 18
84219931 TTTGATGCAA
84219941 TAAAAACCCTAATTTAAT
1 TAAAAACCCTAATTTAAT
84219959 TAAAAACCCTAACCTAATTTAAT
1 TAAAAA--C---CCTAATTTAAT
84219982 TAAAAACCCTAA-TTAAT
1 TAAAAACCCTAATTTAAT
*
84219999 TCAAAACCCTAA
1 TAAAAACCCTAA
84220011 CCCTAACCCT
Statistics
Matches: 46, Mismatches: 1, Indels: 11
0.79 0.02 0.19
Matches are distributed among these distances:
17 16 0.35
18 11 0.24
20 1 0.02
21 1 0.02
23 17 0.37
ACGTcount: A:0.50, C:0.21, G:0.00, T:0.29
Consensus pattern (18 bp):
TAAAAACCCTAATTTAAT
Found at i:84220041 original size:29 final size:29
Alignment explanation
Indices: 84220009--84220390 Score: 755
Period size: 29 Copynumber: 13.1 Consensus size: 29
84219999 TCAAAACCCT
84220009 AACCCTAACCCTAATCTAATTTAATTAAA
1 AACCCTAACCCTAATCTAATTTAATTAAA
84220038 AACCCTAACCCTAATCTAATTTAATTAAA
1 AACCCTAACCCTAATCTAATTTAATTAAA
84220067 AACCCTAACCCTAATCTAATTTAATTAAA
1 AACCCTAACCCTAATCTAATTTAATTAAA
84220096 AACCCTAACCCTAATCTAATTTAATTAAA
1 AACCCTAACCCTAATCTAATTTAATTAAA
84220125 AACCCTAACCCTAATCTAATTTAATTAAA
1 AACCCTAACCCTAATCTAATTTAATTAAA
84220154 AACCCTAACCCTAATCTAATTTAATTAAA
1 AACCCTAACCCTAATCTAATTTAATTAAA
84220183 AACCCTAACCCTAATCTAATTTAATTAAA
1 AACCCTAACCCTAATCTAATTTAATTAAA
84220212 AACCCTAACCCTAATCTAATTTAATTAAA
1 AACCCTAACCCTAATCTAATTTAATTAAA
84220241 AACCCTAACCCTAATCTAATTTAATTAAA
1 AACCCTAACCCTAATCTAATTTAATTAAA
84220270 AACCCTAACCCTAATCTAATTTAATTAAA
1 AACCCTAACCCTAATCTAATTTAATTAAA
84220299 AACCCTAACCCTAATCTAATTTAATTAAA
1 AACCCTAACCCTAATCTAATTTAATTAAA
84220328 AACCCTAACCCTAATCTAATTTAATTAAA
1 AACCCTAACCCTAATCTAATTTAATTAAA
84220357 AACCCTAACCCTAATCTAATTTAATTAAA
1 AACCCTAACCCTAATCTAATTTAATTAAA
84220386 TAACC
1 -AACC
84220391 ATTAACACAA
Statistics
Matches: 352, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
29 348 0.99
30 4 0.01
ACGTcount: A:0.45, C:0.24, G:0.00, T:0.31
Consensus pattern (29 bp):
AACCCTAACCCTAATCTAATTTAATTAAA
Found at i:84220450 original size:55 final size:55
Alignment explanation
Indices: 84220386--84220539 Score: 308
Period size: 55 Copynumber: 2.8 Consensus size: 55
84220376 TTTAATTAAA
84220386 TAACCATTAACACAATTTTTGGACTTAATAATTTTACATAATTTGATAATTTTAC
1 TAACCATTAACACAATTTTTGGACTTAATAATTTTACATAATTTGATAATTTTAC
84220441 TAACCATTAACACAATTTTTGGACTTAATAATTTTACATAATTTGATAATTTTAC
1 TAACCATTAACACAATTTTTGGACTTAATAATTTTACATAATTTGATAATTTTAC
84220496 TAACCATTAACACAATTTTTGGACTTAATAATTTTACATAATTT
1 TAACCATTAACACAATTTTTGGACTTAATAATTTTACATAATTT
84220540 TACATAATGT
Statistics
Matches: 99, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 99 1.00
ACGTcount: A:0.38, C:0.13, G:0.05, T:0.44
Consensus pattern (55 bp):
TAACCATTAACACAATTTTTGGACTTAATAATTTTACATAATTTGATAATTTTAC
Found at i:84220538 original size:10 final size:10
Alignment explanation
Indices: 84220523--84220547 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
84220513 TTTGGACTTA
84220523 ATAATTTTAC
1 ATAATTTTAC
84220533 ATAATTTTAC
1 ATAATTTTAC
84220543 ATAAT
1 ATAAT
84220548 GTTAGATTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (10 bp):
ATAATTTTAC
Found at i:84223872 original size:121 final size:123
Alignment explanation
Indices: 84223658--84224001 Score: 548
Period size: 123 Copynumber: 2.8 Consensus size: 123
84223648 CAAACTTGCT
* * *
84223658 ACTGTAGCAAAACCGCGTCCAAGAAGGTGCGATTTCACAATTTCTTCTCAAATAGCATCCTGGTA
1 ACTGTAGCAAAACCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGGTA
* *
84223723 GAAGCGATTTTATACTATTTTCTCAGAAACGTCAAAA-AA-AATTTCTTACATGACCA
66 GAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAACAATAATTTATTACATGACCA
* * *
84223779 ACTGTAGCAAAATCGCGTCCACGAGGGCACGATTTCACAATTTCTTCTTAAATAGCATCCTGGTA
1 ACTGTAGCAAAACCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGGTA
* * *
84223844 GAAGCGATTTTATACTATTTGCTCAGAAACATCAAAACAATTATTTATTACATGACCT
66 GAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAACAATAATTTATTACATGACCA
*
84223902 ACTGTAGCCAAACCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGGTA
1 ACTGTAGCAAAACCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGGTA
* *
84223967 AAAGCGATTTTATACTATTTGCTCACAAACGTCAA
66 GAAGCGATTTTATACTATTTGCTCAGAAACGTCAA
84224002 CTCGAAATAA
Statistics
Matches: 203, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
121 94 0.46
122 2 0.01
123 107 0.53
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (123 bp):
ACTGTAGCAAAACCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGGTA
GAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAACAATAATTTATTACATGACCA
Found at i:84226560 original size:47 final size:48
Alignment explanation
Indices: 84226491--84226584 Score: 163
Period size: 47 Copynumber: 2.0 Consensus size: 48
84226481 TTCTTTGCTT
*
84226491 AAAAACGCCTAAGTCAGCCTAACTCGCAATGA-AAAGGATTCAACAGC
1 AAAAACGCCTAAGTCAGCCTAACTCGCAATAATAAAGGATTCAACAGC
*
84226538 AAAAACGCCTAAGTCAGCCTAACTTGCAATAATAAAGGATTCAACAG
1 AAAAACGCCTAAGTCAGCCTAACTCGCAATAATAAAGGATTCAACAG
84226585 AATTCCCTCA
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
47 30 0.68
48 14 0.32
ACGTcount: A:0.44, C:0.23, G:0.16, T:0.17
Consensus pattern (48 bp):
AAAAACGCCTAAGTCAGCCTAACTCGCAATAATAAAGGATTCAACAGC
Found at i:84226847 original size:17 final size:17
Alignment explanation
Indices: 84226788--84226851 Score: 58
Period size: 17 Copynumber: 3.6 Consensus size: 17
84226778 CATCAAAGGC
* *
84226788 TACAATTAAAAGTTGTA
1 TACAATTAGAAGCTGTA
*
84226805 TACAATTAGAA-CTCTTAGA
1 TACAATTAGAAGCT-GT--A
*
84226824 CACAATTAGAAGCTGTA
1 TACAATTAGAAGCTGTA
84226841 TACAATTAGAA
1 TACAATTAGAA
84226852 CTCTAAGATT
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
16 1 0.03
17 22 0.59
19 12 0.32
20 2 0.05
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.30
Consensus pattern (17 bp):
TACAATTAGAAGCTGTA
Found at i:84227111 original size:22 final size:22
Alignment explanation
Indices: 84227066--84227111 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
84227056 CCCTCGTCGC
**
84227066 ATCTTCCTTATGGAACTGGTCA
1 ATCTTCCTTATGGAACTGCACA
84227088 ATCTTCCTT-TGGAACTGCCACA
1 ATCTTCCTTATGGAACTG-CACA
84227110 AT
1 AT
84227112 GCCTCGGCAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.24, C:0.26, G:0.15, T:0.35
Consensus pattern (22 bp):
ATCTTCCTTATGGAACTGCACA
Found at i:84231698 original size:47 final size:48
Alignment explanation
Indices: 84231629--84231722 Score: 163
Period size: 47 Copynumber: 2.0 Consensus size: 48
84231619 TTCTTTGCAT
84231629 AAAAACGCCTAAGTCAGCCTAACTCGCAATGA-AAAGGATTCAACAGC
1 AAAAACGCCTAAGTCAGCCTAACTCGCAATGATAAAGGATTCAACAGC
* *
84231676 AAAAACGCCTAAGTCGGCCTAACTTGCAATGATAAAGGATTCAACAG
1 AAAAACGCCTAAGTCAGCCTAACTCGCAATGATAAAGGATTCAACAG
84231723 AATTCCCTCA
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
47 30 0.68
48 14 0.32
ACGTcount: A:0.41, C:0.23, G:0.18, T:0.17
Consensus pattern (48 bp):
AAAAACGCCTAAGTCAGCCTAACTCGCAATGATAAAGGATTCAACAGC
Found at i:84231967 original size:36 final size:36
Alignment explanation
Indices: 84231927--84231997 Score: 124
Period size: 36 Copynumber: 2.0 Consensus size: 36
84231917 ATCAAAGGCT
*
84231927 ACAATTAAAAGTTGTATACAATTAGAACTCTAAGAC
1 ACAATTAAAAGCTGTATACAATTAGAACTCTAAGAC
*
84231963 ACAATTAGAAGCTGTATACAATTAGAACTCTAAGA
1 ACAATTAAAAGCTGTATACAATTAGAACTCTAAGA
84231998 TTACATAATC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.46, C:0.14, G:0.13, T:0.27
Consensus pattern (36 bp):
ACAATTAAAAGCTGTATACAATTAGAACTCTAAGAC
Found at i:84231968 original size:19 final size:19
Alignment explanation
Indices: 84231944--84231997 Score: 60
Period size: 17 Copynumber: 2.9 Consensus size: 19
84231934 AAAGTTGTAT
84231944 ACAATTAGAACTCTAAGAC
1 ACAATTAGAACTCTAAGAC
* *
84231963 ACAATTAGAA-GCT--GTAT
1 ACAATTAGAACTCTAAG-AC
84231980 ACAATTAGAACTCTAAGA
1 ACAATTAGAACTCTAAGA
84231998 TTACATAATC
Statistics
Matches: 28, Mismatches: 3, Indels: 8
0.72 0.08 0.21
Matches are distributed among these distances:
16 1 0.04
17 11 0.39
18 4 0.14
19 11 0.39
20 1 0.04
ACGTcount: A:0.46, C:0.17, G:0.13, T:0.24
Consensus pattern (19 bp):
ACAATTAGAACTCTAAGAC
Found at i:84231985 original size:17 final size:17
Alignment explanation
Indices: 84231926--84231989 Score: 58
Period size: 17 Copynumber: 3.6 Consensus size: 17
84231916 CATCAAAGGC
* *
84231926 TACAATTAAAAGTTGTA
1 TACAATTAGAAGCTGTA
*
84231943 TACAATTAGAA-CTCTAAGA
1 TACAATTAGAAGCTGT---A
*
84231962 CACAATTAGAAGCTGTA
1 TACAATTAGAAGCTGTA
84231979 TACAATTAGAA
1 TACAATTAGAA
84231990 CTCTAAGATT
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
16 2 0.05
17 21 0.57
19 11 0.30
20 3 0.08
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.28
Consensus pattern (17 bp):
TACAATTAGAAGCTGTA
Found at i:84237117 original size:48 final size:46
Alignment explanation
Indices: 84237084--84237218 Score: 207
Period size: 48 Copynumber: 2.8 Consensus size: 46
84237074 ATTTCTTGAT
84237084 TTTTAATAAAATATTAAAGTCCTTATTTTAAATATTGATTAGTACTTA
1 TTTTAATAAAATATTAAAGTCCTTATTTTAAATATTGATTA-T-CTTA
*
84237132 TTTTAATAAAATATTAAAGTCCTTATTTTAATTATTGATTAGTCATTA
1 TTTTAATAAAATATTAAAGTCCTTATTTTAAATATTGATTA-TC-TTA
* *
84237180 TTTTAATGAAATATTAAAGTCCTTATTTTAATTATTGAT
1 TTTTAATAAAATATTAAAGTCCTTATTTTAAATATTGAT
84237219 GTAATTATTT
Statistics
Matches: 84, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
47 1 0.01
48 83 0.99
ACGTcount: A:0.38, C:0.06, G:0.07, T:0.50
Consensus pattern (46 bp):
TTTTAATAAAATATTAAAGTCCTTATTTTAAATATTGATTATCTTA
Found at i:84237124 original size:25 final size:25
Alignment explanation
Indices: 84237096--84237218 Score: 107
Period size: 25 Copynumber: 5.1 Consensus size: 25
84237086 TTAATAAAAT
84237096 ATTAAAGTCCTTATTTTAAATATTG
1 ATTAAAGTCCTTATTTTAAATATTG
* * *
84237121 ATT--AGTACTTATTTTAATAAAAT-
1 ATTAAAGTCCTTATTTTAA-ATATTG
*
84237144 ATTAAAGTCCTTATTTTAATTATTG
1 ATTAAAGTCCTTATTTTAAATATTG
* *
84237169 ATT--AGTCATTATTTT-AATGAAAT-
1 ATTAAAGTCCTTATTTTAAAT--ATTG
*
84237192 ATTAAAGTCCTTATTTTAATTATTG
1 ATTAAAGTCCTTATTTTAAATATTG
84237217 AT
1 AT
84237219 GTAATTATTT
Statistics
Matches: 75, Mismatches: 13, Indels: 20
0.69 0.12 0.19
Matches are distributed among these distances:
22 2 0.03
23 30 0.40
24 9 0.12
25 32 0.43
26 2 0.03
ACGTcount: A:0.37, C:0.07, G:0.07, T:0.50
Consensus pattern (25 bp):
ATTAAAGTCCTTATTTTAAATATTG
Found at i:84237186 original size:23 final size:24
Alignment explanation
Indices: 84237100--84237218 Score: 111
Period size: 23 Copynumber: 5.0 Consensus size: 24
84237090 TAAAATATTA
*
84237100 AAGTCCTTATTTTAAATATTGATT
1 AAGTCCTTATTTTAATTATTGATT
* * *
84237124 -AGTACTTATTTTAATAAAAT-ATT
1 AAGTCCTTATTTTAAT-TATTGATT
84237147 AAAGTCCTTATTTTAATTATTGATT
1 -AAGTCCTTATTTTAATTATTGATT
* * *
84237172 -AGTCATTATTTTAATGAAAT-ATT
1 AAGTCCTTATTTTAAT-TATTGATT
84237195 AAAGTCCTTATTTTAATTATTGAT
1 -AAGTCCTTATTTTAATTATTGAT
84237219 GTAATTATTT
Statistics
Matches: 74, Mismatches: 13, Indels: 15
0.73 0.13 0.15
Matches are distributed among these distances:
23 33 0.45
24 8 0.11
25 33 0.45
ACGTcount: A:0.36, C:0.07, G:0.08, T:0.50
Consensus pattern (24 bp):
AAGTCCTTATTTTAATTATTGATT
Found at i:84238361 original size:23 final size:23
Alignment explanation
Indices: 84238335--84238387 Score: 106
Period size: 23 Copynumber: 2.3 Consensus size: 23
84238325 TAAACAAATT
84238335 CAATTTCCAGCAGACAATCAAAA
1 CAATTTCCAGCAGACAATCAAAA
84238358 CAATTTCCAGCAGACAATCAAAA
1 CAATTTCCAGCAGACAATCAAAA
84238381 CAATTTC
1 CAATTTC
84238388 AGAACAAATC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.45, C:0.26, G:0.08, T:0.21
Consensus pattern (23 bp):
CAATTTCCAGCAGACAATCAAAA
Found at i:84238415 original size:22 final size:21
Alignment explanation
Indices: 84238373--84238418 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 21
84238363 TCCAGCAGAC
* *
84238373 AATCAAAACAATTTCAGAACA
1 AATCAAAACAATATCAAAACA
84238394 AATCAAGAACAATATCAAAACA
1 AATCAA-AACAATATCAAAACA
84238416 AAT
1 AAT
84238419 GCAACAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 6 0.27
22 16 0.73
ACGTcount: A:0.61, C:0.17, G:0.04, T:0.17
Consensus pattern (21 bp):
AATCAAAACAATATCAAAACA
Found at i:84240614 original size:9 final size:9
Alignment explanation
Indices: 84240600--84240632 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
84240590 GAGTTAAACG
84240600 AATCGAGTT
1 AATCGAGTT
84240609 AATCGAGTT
1 AATCGAGTT
84240618 AATCGAGTT
1 AATCGAGTT
*
84240627 ATTCGA
1 AATCGA
84240633 ATCAACTCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.33
Consensus pattern (9 bp):
AATCGAGTT
Found at i:84240960 original size:30 final size:31
Alignment explanation
Indices: 84240926--84240985 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
84240916 AAACCTTTTA
*
84240926 TTTTCTCCC-AAAATTTTTACTCCC-TCCCAC
1 TTTTC-CCCTAAAACTTTTACTCCCTTCCCAC
*
84240956 TTTTCCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCTAAAACTTTTACTCCCTTCCCA
84240986 TCCCACCTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 3 0.12
30 18 0.69
31 5 0.19
ACGTcount: A:0.20, C:0.38, G:0.00, T:0.42
Consensus pattern (31 bp):
TTTTCCCCTAAAACTTTTACTCCCTTCCCAC
Found at i:84241254 original size:9 final size:9
Alignment explanation
Indices: 84241240--84241268 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
84241230 AATTTCACAT
84241240 TTTATATTA
1 TTTATATTA
84241249 TTTATATTA
1 TTTATATTA
84241258 TTTATATTA
1 TTTATATTA
84241267 TT
1 TT
84241269 GAATTGTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (9 bp):
TTTATATTA
Found at i:84253520 original size:22 final size:22
Alignment explanation
Indices: 84253476--84253516 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
84253466 CGTATGCATT
*
84253476 AAAATAGTTAGATATAAAATAA
1 AAAATAGTTAGATACAAAATAA
*
84253498 AAAATATTTAGA-ACAAAAT
1 AAAATAGTTAGATACAAAAT
84253517 TAAACTTGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.63, C:0.02, G:0.07, T:0.27
Consensus pattern (22 bp):
AAAATAGTTAGATACAAAATAA
Found at i:84254244 original size:27 final size:27
Alignment explanation
Indices: 84254194--84254264 Score: 88
Period size: 27 Copynumber: 2.6 Consensus size: 27
84254184 TCCCCGACCC
* *
84254194 TCTGCTGCATCACCGTCGATTGTCCCA
1 TCTGCTGCATCACCGTCAACTGTCCCA
* * *
84254221 TCTGCTGCATTACTGTCAACTGTCCCC
1 TCTGCTGCATCACCGTCAACTGTCCCA
*
84254248 TTTGCTGCATCACCGTC
1 TCTGCTGCATCACCGTC
84254265 GACACTCCTC
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.14, C:0.37, G:0.17, T:0.32
Consensus pattern (27 bp):
TCTGCTGCATCACCGTCAACTGTCCCA
Found at i:84257399 original size:72 final size:71
Alignment explanation
Indices: 84257322--84257542 Score: 214
Period size: 72 Copynumber: 3.1 Consensus size: 71
84257312 AGTAAAATCG
** *
84257322 TTTATTTAATTATGTGTTTTTAAAAAGGTTAATTTAGTTCAATTTATTAAGTTTTGTTATTAAGC
1 TTTATTTAATTATGAATTTTTAAAAAGGTTAATTTAGTTCAATTTATTAAGTTTTGATATTAAG-
*
84257387 GAAACCA
65 AAAACCA
* * * * ** *
84257394 TTTATTTAGTTAT-ACA-TTTTCAGAAGCTTAATTTAGTTTGATTTATTGAA-ATTTGATATTAA
1 TTTATTTAATTATGA-ATTTTTAAAAAGGTTAATTTAGTTCAATTTATT-AAGTTTTGATATTAA
*
84257456 GTAAAAACA
64 G-AAAACCA
* * * * *
84257465 TTTGTTCAATTATGAATTTTTAAAAAGGTTAGTTTAGTTCAACTTATTGAGTTTTGATATTAAGT
1 TTTATTTAATTATGAATTTTTAAAAAGGTTAATTTAGTTCAATTTATTAAGTTTTGATATTAAG-
*
84257530 AGAACCA
65 AAAACCA
84257537 TTTATT
1 TTTATT
84257543 CTGTTATACA
Statistics
Matches: 116, Mismatches: 28, Indels: 10
0.75 0.18 0.06
Matches are distributed among these distances:
71 54 0.47
72 62 0.53
ACGTcount: A:0.34, C:0.06, G:0.13, T:0.48
Consensus pattern (71 bp):
TTTATTTAATTATGAATTTTTAAAAAGGTTAATTTAGTTCAATTTATTAAGTTTTGATATTAAGA
AAACCA
Found at i:84257425 original size:71 final size:71
Alignment explanation
Indices: 84257338--84257552 Score: 195
Period size: 71 Copynumber: 3.0 Consensus size: 71
84257328 TAATTATGTG
* * *
84257338 TTTTTAAAAAGGTTAATTTAGTTCAATTTATTAAGTTTTGTTATTAAGCGAAACCATTTATTTAG
1 TTTTTAAAAAGCTTAATTTAGTTCAATTTATTAAGTTTTGATATTAAG-AAAACCATTTATTTAG
84257403 TTATACA
65 TTATACA
* * ** * * * *
84257410 -TTTTCAGAAGCTTAATTTAGTTTGATTTATTGAA-ATTTGATATTAAGTAAAAACATTTGTTCA
1 TTTTTAAAAAGCTTAATTTAGTTCAATTTATT-AAGTTTTGATATTAAG-AAAACCATTTATTTA
*
84257473 ATTATGA-A
64 GTTAT-ACA
* * * * *
84257481 TTTTTAAAAAGGTTAGTTTAGTTCAACTTATTGAGTTTTGATATTAAGTAGAACCATTTATTCT-
1 TTTTTAAAAAGCTTAATTTAGTTCAATTTATTAAGTTTTGATATTAAG-AAAACCATTTATT-TA
84257545 GTTATACA
64 GTTATACA
84257553 AAGTAAAATC
Statistics
Matches: 110, Mismatches: 27, Indels: 12
0.74 0.18 0.08
Matches are distributed among these distances:
71 55 0.50
72 55 0.50
ACGTcount: A:0.34, C:0.07, G:0.13, T:0.46
Consensus pattern (71 bp):
TTTTTAAAAAGCTTAATTTAGTTCAATTTATTAAGTTTTGATATTAAGAAAACCATTTATTTAGT
TATACA
Found at i:84257930 original size:19 final size:19
Alignment explanation
Indices: 84257908--84257963 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 19
84257898 TTTAATCCAA
**
84257908 TTTTTATTATTTATTTTAG
1 TTTTTATTATAAATTTTAG
* *
84257927 TTTTTATTCTAAATTTTTG
1 TTTTTATTATAAATTTTAG
* *
84257946 TTTTTATTTTAAAATTTA
1 TTTTTATTATAAATTTTA
84257964 AGATAACTTG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.25, C:0.02, G:0.04, T:0.70
Consensus pattern (19 bp):
TTTTTATTATAAATTTTAG
Found at i:84257960 original size:20 final size:19
Alignment explanation
Indices: 84257920--84257963 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
84257910 TTTATTATTT
84257920 ATTTTAGTTTTTATTCTAA
1 ATTTTAGTTTTTATTCTAA
* *
84257939 ATTTTTGTTTTTATTTTAA
1 ATTTTAGTTTTTATTCTAA
*
84257958 AATTTA
1 ATTTTA
84257964 AGATAACTTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.27, C:0.02, G:0.05, T:0.66
Consensus pattern (19 bp):
ATTTTAGTTTTTATTCTAA
Found at i:84258173 original size:24 final size:22
Alignment explanation
Indices: 84258146--84258190 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
84258136 AAATTTCAAA
84258146 AATAAAACATAATATAATATTTAT
1 AATAAAA-ATAA-ATAATATTTAT
* *
84258170 AATATAAATAAATATTATTTA
1 AATAAAAATAAATAATATTTA
84258191 ATTAAAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 9 0.47
23 4 0.21
24 6 0.32
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (22 bp):
AATAAAAATAAATAATATTTAT
Found at i:84258490 original size:13 final size:13
Alignment explanation
Indices: 84258474--84258500 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
84258464 TAATTAAAGG
84258474 GTTAAAATTTAAA
1 GTTAAAATTTAAA
84258487 GTTAAAATTTAAA
1 GTTAAAATTTAAA
84258500 G
1 G
84258501 ATGATAATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.11, T:0.37
Consensus pattern (13 bp):
GTTAAAATTTAAA
Found at i:84258643 original size:34 final size:35
Alignment explanation
Indices: 84258605--84258729 Score: 184
Period size: 34 Copynumber: 3.6 Consensus size: 35
84258595 TTATATAACT
84258605 TAACTTACATAA-TACATAAATATATATCATATCA
1 TAACTTACATAACTACATAAATATATATCATATCA
* *
84258639 TAACTTACATAACTCACATAAATATATACCAGATCA
1 TAACTTACATAACT-ACATAAATATATATCATATCA
84258675 TAACTTACATAA-TACATAAATATATATCATA-CAA
1 TAACTTACATAACTACATAAATATATATCATATC-A
84258709 TAACTTACATAACTTACATAA
1 TAACTTACATAAC-TACATAA
84258730 CTTACACAAA
Statistics
Matches: 82, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
33 1 0.01
34 41 0.50
35 2 0.02
36 38 0.46
ACGTcount: A:0.50, C:0.18, G:0.01, T:0.32
Consensus pattern (35 bp):
TAACTTACATAACTACATAAATATATATCATATCA
Found at i:84258649 original size:9 final size:9
Alignment explanation
Indices: 84258637--84258735 Score: 62
Period size: 9 Copynumber: 11.2 Consensus size: 9
84258627 TATATCATAT
84258637 CATAACTTA
1 CATAACTTA
*
84258646 CATAACTCA
1 CATAACTTA
*
84258655 CATAA-ATA
1 CATAACTTA
* * **
84258663 TATACCAGA
1 CATAACTTA
84258672 TCATAACTTA
1 -CATAACTTA
84258682 CATAA--TA
1 CATAACTTA
*
84258689 CATAA-ATA
1 CATAACTTA
* * *
84258697 TATATCATA
1 CATAACTTA
84258706 CAATAACTTA
1 C-ATAACTTA
84258716 CATAACTTA
1 CATAACTTA
84258725 CATAACTTA
1 CATAACTTA
84258734 CA
1 CA
84258736 CAAATATATA
Statistics
Matches: 70, Mismatches: 15, Indels: 10
0.74 0.16 0.11
Matches are distributed among these distances:
7 7 0.10
8 9 0.13
9 42 0.60
10 12 0.17
ACGTcount: A:0.48, C:0.20, G:0.01, T:0.30
Consensus pattern (9 bp):
CATAACTTA
Found at i:84258757 original size:45 final size:43
Alignment explanation
Indices: 84258673--84258765 Score: 134
Period size: 45 Copynumber: 2.1 Consensus size: 43
84258663 TATACCAGAT
* *
84258673 CATAACTTACATAATACATAAATATATATCATACAATAACTTA
1 CATAACTTACATAATACACAAATATATATCATACAATAACTAA
84258716 CATAACTTACATAACTTACACAAATATATATCATATC-ATAACTAA
1 CATAACTTACATAA--TACACAAATATATATCATA-CAATAACTAA
84258761 CATAA
1 CATAA
84258766 AACCGTGGAT
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
43 14 0.31
45 30 0.67
46 1 0.02
ACGTcount: A:0.51, C:0.18, G:0.00, T:0.31
Consensus pattern (43 bp):
CATAACTTACATAATACACAAATATATATCATACAATAACTAA
Found at i:84259532 original size:18 final size:18
Alignment explanation
Indices: 84259509--84259547 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
84259499 TTTATGAGGG
84259509 ATCGAAATTTTCAAAACT
1 ATCGAAATTTTCAAAACT
84259527 ATCGAAATTTTCAAAACT
1 ATCGAAATTTTCAAAACT
84259545 ATC
1 ATC
84259548 ACTCTGCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.44, C:0.18, G:0.05, T:0.33
Consensus pattern (18 bp):
ATCGAAATTTTCAAAACT
Found at i:84262477 original size:42 final size:43
Alignment explanation
Indices: 84262383--84262538 Score: 131
Period size: 43 Copynumber: 3.6 Consensus size: 43
84262373 CAATGCCAGC
* * * * *
84262383 GTCCCAGAC-GTGGTCTTACATGTAATC-AAATATCGATGCCACT
1 GTCCCAGACAG-GGTCTTACACGAAATCGTAA-ATCGAGGCCAAT
* * * *
84262426 ATCCCAGACAGGGTCTTACACGAAATCGTATA-CGATGCCGAT
1 GTCCCAGACAGGGTCTTACACGAAATCGTAAATCGAGGCCAAT
* * * *
84262468 GTCCTAGACATGATCTTACACGTAAATCTTAAATCGAGGCCAAT
1 GTCCCAGACAGGGTCTTACACG-AAATCGTAAATCGAGGCCAAT
84262512 GTCCCAGAC-GTGGTCTTACACGAAATC
1 GTCCCAGACAG-GGTCTTACACGAAATC
84262539 ACATATCGGA
Statistics
Matches: 90, Mismatches: 18, Indels: 10
0.76 0.15 0.08
Matches are distributed among these distances:
42 26 0.29
43 36 0.40
44 28 0.31
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (43 bp):
GTCCCAGACAGGGTCTTACACGAAATCGTAAATCGAGGCCAAT
Found at i:84282166 original size:15 final size:15
Alignment explanation
Indices: 84282142--84282175 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
84282132 GTTTTAATAC
84282142 TTTTAAGTTTTGGGT
1 TTTTAAGTTTTGGGT
*
84282157 TTTTAGGTTTTGGGT
1 TTTTAAGTTTTGGGT
84282172 TTTT
1 TTTT
84282176 TAAAAAGGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.09, C:0.00, G:0.26, T:0.65
Consensus pattern (15 bp):
TTTTAAGTTTTGGGT
Found at i:84284813 original size:18 final size:18
Alignment explanation
Indices: 84284769--84284823 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 18
84284759 TAATGAAGGC
*
84284769 GTAGATGAGGAAGAATAT
1 GTAGATGAGGAAGAAGAT
** *
84284787 GCGGCTGAGGAAGAAGAT
1 GTAGATGAGGAAGAAGAT
* *
84284805 GTAGATGAGAAAAAAGAT
1 GTAGATGAGGAAGAAGAT
84284823 G
1 G
84284824 CGACTGATGA
Statistics
Matches: 28, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.44, C:0.04, G:0.36, T:0.16
Consensus pattern (18 bp):
GTAGATGAGGAAGAAGAT
Found at i:84290572 original size:134 final size:133
Alignment explanation
Indices: 84290385--84290650 Score: 398
Period size: 135 Copynumber: 2.0 Consensus size: 133
84290375 GGTAAAAAGA
*
84290385 TCACATGTAAATGTTATAAGAAATTAAGGTATAAACGAAAATAATGTTCAGAT-AAAAAAATCAC
1 TCACATGTAAATGTTATAAGAAATTAACGTATAAACGAAAATAATGTTCAGATAAAAAAAATCAC
84290449 ACACAAGTGTTATAATAAATGAAGATATAAACGATAAAAGTTA-ACTGATTATTGATGT-GACTC
66 ACACAAGTGTTATAATAAATGAAGATATAAACGATAAAAGTTATA-TGATTATTGAT-TCGACTC
84290512 AATGG
129 AATGG
84290517 TCACATGTAAATGTTATATAAGAAATTAACGTATAAACGACAAA-AATGCTT-AGATAAAAAAAA
1 TCACATGTAAATG-T-TATAAGAAATTAACGTATAAACGA-AAATAATG-TTCAGATAAAAAAAA
** * *
84290580 TCACACGTAAGTGTTATGATAAATGAAGATATAAGCGATAAAAGTTATATGATTATTGATTCGAC
62 TCACACACAAGTGTTATAATAAATGAAGATATAAACGATAAAAGTTATATGATTATTGATTCGAC
84290645 TCAATG
127 TCAATG
84290651 AATTCAATAA
Statistics
Matches: 122, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
132 13 0.11
133 1 0.01
134 32 0.26
135 75 0.61
136 1 0.01
ACGTcount: A:0.47, C:0.09, G:0.15, T:0.29
Consensus pattern (133 bp):
TCACATGTAAATGTTATAAGAAATTAACGTATAAACGAAAATAATGTTCAGATAAAAAAAATCAC
ACACAAGTGTTATAATAAATGAAGATATAAACGATAAAAGTTATATGATTATTGATTCGACTCAA
TGG
Found at i:84293971 original size:3 final size:3
Alignment explanation
Indices: 84293963--84294024 Score: 61
Period size: 3 Copynumber: 20.7 Consensus size: 3
84293953 TTTATCGTTC
* * * * * * *
84293963 TCA TCA TCA TCA GCA GCA GCA CCA TCA TCG TCG TCA TCA TCA TCA TCT
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
84294011 TCA TCA TCA TCA TC
1 TCA TCA TCA TCA TC
84294025 CTGATCTGGT
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.27, C:0.35, G:0.08, T:0.29
Consensus pattern (3 bp):
TCA
Found at i:84295735 original size:153 final size:153
Alignment explanation
Indices: 84295262--84298788 Score: 4427
Period size: 153 Copynumber: 23.1 Consensus size: 153
84295252 TAAATTAAAT
* * * * * * *
84295262 TATAAGTTTTTAAAGATGAATATTAGTC-GCATATTAATCTTGATTTTGCCGGTGATAGTTTATA
1 TATAAGTTCTCAAAGACGCATATTAG-CAGCACATTAATCTTGATTTTGTCGGTGATGGTTTATA
* ** * * * * * *
84295326 TTTTTAATAAAA-AAGTCGTAATTTGATATTAA-GGGAAGTGGTTCAAATGATATACTTATTAGG
65 TTTTTAATAAAAGAGGTAATAATTTGAGATTAAGGGGAA---GTCCAACTGCTATATTTATTAGC
*
84295389 TAG-T-CA-GAATGGATCGAGTTATA-C
127 TAGTTGCATGAATCGATCGAGTTA-AGC
* ** * * * * * *
84295413 TATAAGTTCTCAAATACAAACATTTGCAGCACATTGATATTGAATTTGTCGGTGATGGTTTAGAT
1 TATAAGTTCTCAAAGACGCATATTAGCAGCACATTAATCTTGATTTTGTCGGTGATGGTTTATAT
84295478 TTTTAATAAAAGAGGTAATAATTTGAGATTAA-GGGAAGTCCAACTGCTATATTTATTAGCTAGT
66 TTTTAATAAAAGAGGTAATAATTTGAGATTAAGGGGAAGTCCAACTGCTATATTTATTAGCTAGT
* * *
84295542 TGTATTAATCGATCGAGTTAAGT
131 TGCATGAATCGATCGAGTTAAGC
* *
84295565 TATAATTTCTCAAAGACGCATATTAGCAGCACATTAATCTTGATTTTGACGGTGATGGTTTATAT
1 TATAAGTTCTCAAAGACGCATATTAGCAGCACATTAATCTTGATTTTGTCGGTGATGGTTTATAT
* * * * * **
84295630 TTTTAACAAAAGAGGTAATAATTTCATATTAAGGGGAAGTTCAATTGC-ATTATTTATTAAATAG
66 TTTTAATAAAAGAGGTAATAATTTGAGATTAAGGGGAAGTCCAACTGCTA-TATTTATTAGCTAG
* * *
84295694 TTGTAAGAATCGATCGATTTAAGC
130 TTGCATGAATCGATCGAGTTAAGC
* *
84295718 TATAAATTCTCAAAGACG-ACTATTAGCAGCACATTAGA-CTTGATTTTCTCGGTGATGGTTTAT
1 TATAAGTTCTCAAAGACGCA-TATTAGCAGCACATTA-ATCTTGATTTTGTCGGTGATGGTTTAT
* * * *
84295781 ATTTTTAATAAAAGAGGTAAAAATTTGAGATAAAGGGGAAATCCAACTACTATATTTATTAGCTA
64 ATTTTTAATAAAAGAGGTAATAATTTGAGATTAAGGGGAAGTCCAACTGCTATATTTATTAGCTA
*
84295846 GTTGCATGAATCAATCGAGTTAAGC
129 GTTGCATGAATCGATCGAGTTAAGC
* * * *
84295871 TGTAAGTTCTCAAAGACGCATATTAGCAGCACATTAATCTTGATTTTGACCGCGATGGTTTATAT
1 TATAAGTTCTCAAAGACGCATATTAGCAGCACATTAATCTTGATTTTGTCGGTGATGGTTTATAT
* * * *
84295936 TTTTAATAAGAGAGGTAATACTTTGAGATTAAGGGGAAGTCCAACTGCTATAGTTATTAGCTAGC
66 TTTTAATAAAAGAGGTAATAATTTGAGATTAAGGGGAAGTCCAACTGCTATATTTATTAGCTAGT
* * *
84296001 TACATGTATC-AGTCGAGTTAAGT
131 TGCATGAATCGA-TCGAGTTAAGC
* * * * * * ** *
84296024 TATAAGTTCTCAAAGACGCATATTAACAACACCTTGATATTGATTTTGTCTGCAATGGTTTATTT
1 TATAAGTTCTCAAAGACGCATATTAGCAGCACATTAATCTTGATTTTGTCGGTGATGGTTTA-TA
84296089 TTTTTAATAAAAGAGGTAATAATTTGAGATTAAGGGGAAGTCCAACTGCTATATTTATTAGCTAG
65 TTTTTAATAAAAGAGGTAATAATTTGAGATTAAGGGGAAGTCCAACTGCTATATTTATTAGCTAG
* *
84296154 ATGCATGAATCGATCAAGTTAAGC
130 TTGCATGAATCGATCGAGTTAAGC
* ** * * *
84296178 TATAAGTTCTTAAAGATTCATATTAGCAGCACACTAATTTTGATTTTTGTCGTTGATGGTTTATA
1 TATAAGTTCTCAAAGACGCATATTAGCAGCACATTAATCTTGA-TTTTGTCGGTGATGGTTTATA
* *
84296243 TTTTTAATAAAAGAGGTAAAAAATTGAGATTAAGGGGAAGTCCAACTGCTATATTTATTAGCTAG
65 TTTTTAATAAAAGAGGTAATAATTTGAGATTAAGGGGAAGTCCAACTGCTATATTTATTAGCTAG
*
84296308 ATGCATGAATCGATCGAGTTAAGC
130 TTGCATGAATCGATCGAGTTAAGC
* * * * * *
84296332 TAT-AGTTTCTCAAAGAGGAACATTAGTAGTACATTAATCTTGATTTTGTGGGTGATGG-TT-T-
1 TATAAG-TTCTCAAAGACGCATATTAGCAGCACATTAATCTTGATTTTGTCGGTGATGGTTTATA
* * *
84296393 TTTTTAATAAAAGAGGTAATAATTTGAGATTAAGGGGAAGTCCAACTACTATATTTACTAGTTAG
65 TTTTTAATAAAAGAGGTAATAATTTGAGATTAAGGGGAAGTCCAACTGCTATATTTATTAGCTAG
* *
84296458 TTGCATGTATCAATCGAGTTAAGC
130 TTGCATGAATCGATCGAGTTAAGC
* * * * *
84296482 TATAAGTTCTCAAAGATGCATATTAGTAGCACATTAATCTTGATTTTGTTGGCGATGGTTTATTT
1 TATAAGTTCTCAAAGACGCATATTAGCAGCACATTAATCTTGATTTTGTCGGTGATGGTTTA-TA
* * *
84296547 TTTTTAATAAAAGAGGTAATAATTTGAGATTAAGGGAAAGTGCAACTGCTATATTTTTTTAGCTA
65 TTTTTAATAAAAGAGGTAATAATTTGAGATTAAGGGGAAGTCCAACTGCTATA-TTTATTAGCTA
* * *
84296612 ATTGCATGAATCAATCAAGTTAAGC
129 GTTGCATGAATCGATCGAGTTAAGC
* * * *
84296637 TATAAGTGCTCAAAGATGCATATTAGCAACACATTAATCTTGATTTTGTCAGTGATGGTTTATAT
1 TATAAGTTCTCAAAGACGCATATTAGCAGCACATTAATCTTGATTTTGTCGGTGATGGTTTATAT
* *
84296702 TTTTAATAAAAGAGGTAATACTTTGAGATTAAGGGGAAGCCCAACTGCTATATTTATTAGCTAGT
66 TTTTAATAAAAGAGGTAATAATTTGAGATTAAGGGGAAGTCCAACTGCTATATTTATTAGCTAGT
*
84296767 TGCATGAATCGATTGAGTTAAGC
131 TGCATGAATCGATCGAGTTAAGC
** *
84296790 TATAAGTTCTCAAAGACGCATATTAG--TTACATTAATCTTGATTTTGTGGGTGATGGTTTATAT
1 TATAAGTTCTCAAAGACGCATATTAGCAGCACATTAATCTTGATTTTGTCGGTGATGGTTTATAT
*
84296853 TTTTAATAAAAGAGGTAATACTTTGAGATTAAAGGGG-AGTCCAACTGCTATATTTATTAGCTAG
66 TTTTAATAAAAGAGGTAATAATTTGAGATT-AAGGGGAAGTCCAACTGCTATATTTATTAGCTAG
* * * *
84296917 CTACATGTATCGGTCGAGTTAAGC
130 TTGCATGAATCGATCGAGTTAAGC
* * * * *
84296941 TATAGGTTCTCAAAGACGCATATTAGCAACACCTTAATCTTGATTTTGTCGGCGATGATTTATTT
1 TATAAGTTCTCAAAGACGCATATTAGCAGCACATTAATCTTGATTTTGTCGGTGATGGTTTA--T
*
84297006 ATTTTTAATAAAAGAGGTAATAATTTGAGATTAAGGGGAAGTCCAACTACTATATTTATTAGCTA
64 ATTTTTAATAAAAGAGGTAATAATTTGAGATTAAGGGGAAGTCCAACTGCTATATTTATTAGCTA
** *
84297071 AATGCATGAA-CTAATCGAGTTAAGC
129 GTTGCATGAATC-GATCGAGTTAAGC
* ** *
84297096 TATAAGTTCTCAAAGATGCATAAAAGCAGCACATTAATCTTGATTTTTATC-GTCGATGGTTTAT
1 TATAAGTTCTCAAAGACGCATATTAGCAGCACATTAATCTTGA-TTTTGTCGGT-GATGGTTTAT
* *
84297160 ATTTTTAATAAAAGAGGTAATAAATTGAGATTAAGGGGAAGTCCAACTGCTATATTTATAAGCTA
64 ATTTTTAATAAAAGAGGTAATAATTTGAGATTAAGGGGAAGTCCAACTGCTATATTTATTAGCTA
* *
84297225 GATGCATGAATCGATCGATTTAAGC
129 GTTGCATGAATCGATCGAGTTAAGC
* * * *
84297250 TAT-AGTTTCTCAAATACGCATATTAGTAGTACATTAATCTTGATTTTGTGGGTGATGGTTTATA
1 TATAAG-TTCTCAAAGACGCATATTAGCAGCACATTAATCTTGATTTTGTCGGTGATGGTTTATA
84297314 TTTTTAATAAAAGAGGTAATAATTTGAGATTAAGGGGAAGTCCAACTGCTATATTTATTAGCTAT
65 TTTTTAATAAAAGAGGTAATAATTTGAGATTAAGGGGAAGTCCAACTGCTATATTTATTAGC--T
84297379 AGTTGCATGAATCGATCGAGTTAAGC
128 AGTTGCATGAATCGATCGAGTTAAGC
* * * * * * ***
84297405 TTTAAGTTCTCAAAGATGCATATTAACAACACATTACTCTTGATTTTGTC-ATCGACAATTTATA
1 TATAAGTTCTCAAAGACGCATATTAGCAGCACATTAATCTTGATTTTGTCGGT-GATGGTTTATA
* * *
84297469 TTTTTAATAAAAGAGGAAATAATTTGAGATTAAGGGGAAGTCCAACTGATATATTTATTAACTAG
65 TTTTTAATAAAAGAGGTAATAATTTGAGATTAAGGGGAAGTCCAACTGCTATATTTATTAGCTAG
* * *
84297534 TTGTATGGATCGATCAAGTTAAGC
130 TTGCATGAATCGATCGAGTTAAGC
* * * * *
84297558 TATAAGTTCTTAAAGACGTATATTAGTAGTACATTAATCTTGATTTTGTGGGTGATGGTTTATAT
1 TATAAGTTCTCAAAGACGCATATTAGCAGCACATTAATCTTGATTTTGTCGGTGATGGTTTATAT
* * *
84297623 TTTTAATGAAAGAGGTAATACTTTGAGATTAAGGGGAAGTCCAACTGTTATATTTATTAGCTAGT
66 TTTTAATAAAAGAGGTAATAATTTGAGATTAAGGGGAAGTCCAACTGCTATATTTATTAGCTAGT
*
84297688 TGCATGAATCGATTGAGTTAAGC
131 TGCATGAATCGATCGAGTTAAGC
*
84297711 TATAAGTTCTCAAAGACGCATATTAGCAGCACATTAATCTTGATTTTGTCAGTGATGGTTTATAT
1 TATAAGTTCTCAAAGACGCATATTAGCAGCACATTAATCTTGATTTTGTCGGTGATGGTTTATAT
*
84297776 TTTTAATAAAAGAGGTAATAATTTGAGATTAAGGGGAAGTCCAACTACTATATTTATTAGCTAGT
66 TTTTAATAAAAGAGGTAATAATTTGAGATTAAGGGGAAGTCCAACTGCTATATTTATTAGCTAGT
84297841 TGCATGAATCGATCGAGTTAAGC
131 TGCATGAATCGATCGAGTTAAGC
* ** * * * * *
84297864 TATAAGTTCTCAGAGGTGCATGTTAGAAGCACATTAATCTTGATTTTGTTGGCGATAGTTTATAT
1 TATAAGTTCTCAAAGACGCATATTAGCAGCACATTAATCTTGATTTTGTCGGTGATGGTTTATAT
* * * * *
84297929 TTTTAATAAAAGAGGAAATAATTTGAGATTAAGGGGAAGAT-TAATTGCAATATTTATTAGCTAT
66 TTTTAATAAAAGAGGTAATAATTTGAGATTAAGGGGAAG-TCCAACTGCTATATTTATTAGCTAG
* ** *
84297993 TTGCATGAATCAATTAAGTTAAGT
130 TTGCATGAATCGATCGAGTTAAGC
* * * * * *
84298017 TATAAGTTCTCAAAGACGCATATTAGCAGCACTTTAATCTTAATTTTGT-TGCGATAGTTTACAT
1 TATAAGTTCTCAAAGACGCATATTAGCAGCACATTAATCTTGATTTTGTCGGTGATGGTTTATAT
* * * *
84298081 TTTTAATAAAAGTGGTAATAATTTGAGATTAA-GGGAAGTCCAATTACTATATTTATTAGTTAGT
66 TTTTAATAAAAGAGGTAATAATTTGAGATTAAGGGGAAGTCCAACTGCTATATTTATTAGCTAGT
*
84298145 TGCATGAATCGATCAAGTTAAGC
131 TGCATGAATCGATCGAGTTAAGC
* * * * *
84298168 TATAAGTTCTCAAATACGCATACTAGAAGCACGTTAATCTTGA-TTTGTGGGTGATGGTTTATAT
1 TATAAGTTCTCAAAGACGCATATTAGCAGCACATTAATCTTGATTTTGTCGGTGATGGTTTATAT
* * * * *
84298232 TTTTAATAAAAGAGGTAATAATTTCAGAATAAGGGGAAGTTCAATTGCT-TATTTATTAAGC-AA
66 TTTTAATAAAAGAGGTAATAATTTGAGATTAAGGGGAAGTCCAACTGCTATATTTATT-AGCTAG
* *
84298295 CTG-A-GAATCGATCGATTTAAGC
130 TTGCATGAATCGATCGAGTTAAGC
* * * * * **
84298317 TATAAGTTCTCAAAGATGAATATTAACGGCACATTAATCTTGATTTTGTTGGCAATGGTTTATAT
1 TATAAGTTCTCAAAGACGCATATTAGCAGCACATTAATCTTGATTTTGTCGGTGATGGTTTATAT
* * * * * *
84298382 TTTTAATAAAAGAGGAAATAATTTGAGATGAAAGGGAAGTTCAATTGCAATATTTATTAGCTAGT
66 TTTTAATAAAAGAGGTAATAATTTGAGATTAAGGGGAAGTCCAACTGCTATATTTATTAGCTAGT
* *
84298447 TGCATGAATCAATCGAGCTAAGC
131 TGCATGAATCGATCGAGTTAAGC
* * * ** * *
84298470 TATAAATTCTCAAAGATGAATATTAATAGTACATTAATCTTGATTTTGTGGGTGATGGTTTATAT
1 TATAAGTTCTCAAAGACGCATATTAGCAGCACATTAATCTTGATTTTGTCGGTGATGGTTTATAT
* * *
84298535 TTTTAATAAAAGAGGTAATACTTTGAGATTAAGGGGAAGTCCAATTGCTACATTTATTAGCTAGT
66 TTTTAATAAAAGAGGTAATAATTTGAGATTAAGGGGAAGTCCAACTGCTATATTTATTAGCTAGT
*
84298600 TGCATGTATCGATCGAGTTAAGC
131 TGCATGAATCGATCGAGTTAAGC
* * * *
84298623 TGTAAGTTCTCAAAGACGCATATTAGCAGCACATTAATCTTGATTTTGTTGGCGATGGTTTATTT
1 TATAAGTTCTCAAAGACGCATATTAGCAGCACATTAATCTTGATTTTGTCGGTGATGGTTTATAT
* * * * * *
84298688 TTTTAATAAAAG-GGAAACAAATTAAGATTTAGGGGAAGTCCAACTGCTATATTGATTAGCTAGT
66 TTTTAATAAAAGAGGTAATAATTTGAGATTAAGGGGAAGTCCAACTGCTATATTTATTAGCTAGT
* *
84298752 TGCATGAATCGATTGGGTTAAGC
131 TGCATGAATCGATCGAGTTAAGC
84298775 TATAAGTTCTCAAA
1 TATAAGTTCTCAAA
84298789 AATACATCTT
Statistics
Matches: 2930, Mismatches: 395, Indels: 101
0.86 0.12 0.03
Matches are distributed among these distances:
149 72 0.02
150 203 0.07
151 345 0.12
152 265 0.09
153 1220 0.42
154 464 0.16
155 345 0.12
156 16 0.01
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.36
Consensus pattern (153 bp):
TATAAGTTCTCAAAGACGCATATTAGCAGCACATTAATCTTGATTTTGTCGGTGATGGTTTATAT
TTTTAATAAAAGAGGTAATAATTTGAGATTAAGGGGAAGTCCAACTGCTATATTTATTAGCTAGT
TGCATGAATCGATCGAGTTAAGC
Found at i:84302485 original size:12 final size:11
Alignment explanation
Indices: 84302455--84302479 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
84302445 TCCTAACTCT
84302455 AAAAATTAAAA
1 AAAAATTAAAA
84302466 AAAAATTAAAA
1 AAAAATTAAAA
84302477 AAA
1 AAA
84302480 TTATTAGTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAAATTAAAA
Found at i:84312136 original size:3 final size:3
Alignment explanation
Indices: 84312088--84312119 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
84312078 TCAAATATGC
84312088 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
84312120 AGAACACAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:84321877 original size:56 final size:56
Alignment explanation
Indices: 84321812--84321931 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
84321802 ACAAGGGATG
84321812 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
84321868 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
84321924 ATGGGCAA
1 ATGGGCAA
84321932 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:84323293 original size:40 final size:40
Alignment explanation
Indices: 84323062--84323286 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
84323052 TCGAATGATG
* * *
84323062 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTTACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
84323102 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
84323142 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
84323181 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
84323221 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
84323262 -CCGGGCTATGTCCTGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
84323287 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:84323308 original size:119 final size:119
Alignment explanation
Indices: 84323062--84323319 Score: 292
Period size: 119 Copynumber: 2.2 Consensus size: 119
84323052 TCGAATGATG
* *
84323062 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTTACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTTACCAAATCCGGACTAAGATCCGAAGGCATTT
* **
84323127 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * **
84323181 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTTACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * *
84323244 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCTGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
* *
84323301 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
84323320 TACGTGATTT
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
118 3 0.03
119 85 0.72
120 30 0.25
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTTACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:84329176 original size:21 final size:21
Alignment explanation
Indices: 84329152--84329199 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
84329142 CTCTCATTAG
84329152 CATTTTTCTACATTCCATTTC
1 CATTTTTCTACATTCCATTTC
*
84329173 CATTTTTTTACATTCCATTTC
1 CATTTTTCTACATTCCATTTC
*
84329194 CCTTTT
1 CATTTT
84329200 CCTTCCATTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.17, C:0.27, G:0.00, T:0.56
Consensus pattern (21 bp):
CATTTTTCTACATTCCATTTC
Done.