Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 276 of 313
Found at i:84329368 original size:36 final size:36
Alignment explanation
Indices: 84329328--84329401 Score: 121
Period size: 36 Copynumber: 2.1 Consensus size: 36
84329318 GGAGGAGTGC
* *
84329328 ATCAGTCAGAATGGATCCAAAAGGGTGCTGAACTGA
1 ATCAGTCAGAATAGATCCAAAAGGCTGCTGAACTGA
*
84329364 ATCAGTCAGAATAGATCCGAAAGGCTGCTGAACTGA
1 ATCAGTCAGAATAGATCCAAAAGGCTGCTGAACTGA
84329400 AT
1 AT
84329402 AGAGTTTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.36, C:0.18, G:0.26, T:0.20
Consensus pattern (36 bp):
ATCAGTCAGAATAGATCCAAAAGGCTGCTGAACTGA
Found at i:84336485 original size:7 final size:7
Alignment explanation
Indices: 84336439--84336486 Score: 60
Period size: 7 Copynumber: 6.9 Consensus size: 7
84336429 TCAAGTAATT
*
84336439 CATTGAA
1 CATTTAA
*
84336446 CATTGAA
1 CATTTAA
*
84336453 CATTGAA
1 CATTTAA
84336460 CATTTAA
1 CATTTAA
*
84336467 TATTTAA
1 CATTTAA
84336474 CATTTAA
1 CATTTAA
84336481 CATTTA
1 CATTTA
84336487 CTAATATCTT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 38 1.00
ACGTcount: A:0.42, C:0.12, G:0.06, T:0.40
Consensus pattern (7 bp):
CATTTAA
Found at i:84340655 original size:12 final size:12
Alignment explanation
Indices: 84340638--84340685 Score: 96
Period size: 12 Copynumber: 4.0 Consensus size: 12
84340628 CCTCACACGC
84340638 CCGTGTGCTAGG
1 CCGTGTGCTAGG
84340650 CCGTGTGCTAGG
1 CCGTGTGCTAGG
84340662 CCGTGTGCTAGG
1 CCGTGTGCTAGG
84340674 CCGTGTGCTAGG
1 CCGTGTGCTAGG
84340686 TCGTTTAACT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 36 1.00
ACGTcount: A:0.08, C:0.25, G:0.42, T:0.25
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:84341697 original size:29 final size:29
Alignment explanation
Indices: 84341655--84341907 Score: 220
Period size: 29 Copynumber: 8.7 Consensus size: 29
84341645 TGTGCTAAAA
* *
84341655 ATGGTCGTAACCATCCCTTTTCATATTCG
1 ATGGTCGAAACCATCCCTTTTCATAGTCG
* ** *
84341684 ATGGTTGTCACCATCCCTTTTTATAGTCG
1 ATGGTCGAAACCATCCCTTTTCATAGTCG
* * * *
84341713 ATAGTTGAAACTATCCCTTTTCATAGTCT
1 ATGGTCGAAACCATCCCTTTTCATAGTCG
* ** ** *
84341742 ATAGTAAAAAAAATCCCTTTTCATAGTTG
1 ATGGTCGAAACCATCCCTTTTCATAGTCG
* * ** *
84341771 CTGGTGGTCACCATCCCTTTTCATAGTTG
1 ATGGTCGAAACCATCCCTTTTCATAGTCG
**
84341800 ATGGTCGCCACCATCCCTTTTCATAGTCG
1 ATGGTCGAAACCATCCCTTTTCATAGTCG
* *
84341829 ATAGTCGAAACTATCCCTTTTCATAGTCG
1 ATGGTCGAAACCATCCCTTTTCATAGTCG
* * * *
84341858 ATAGTTGAAACTATCCCTTTTTATA-TACG
1 ATGGTCGAAACCATCCCTTTTCATAGT-CG
*
84341887 ATGGTCAAAACCATCCCTTTT
1 ATGGTCGAAACCATCCCTTTT
84341908 TCATTGATCG
Statistics
Matches: 185, Mismatches: 38, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
28 1 0.01
29 184 0.99
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (29 bp):
ATGGTCGAAACCATCCCTTTTCATAGTCG
Found at i:84341816 original size:87 final size:88
Alignment explanation
Indices: 84341667--84341907 Score: 247
Period size: 87 Copynumber: 2.8 Consensus size: 88
84341657 GGTCGTAACC
* * * *
84341667 ATCCCTTTTCATA-TTCGATGGTTGTCACCATCCCTTTTTATAGTCGATAGTTGAAACTATCCCT
1 ATCCCTTTTCATAGTTCGATGGTGGTCACCATCCCTTTTCATAGTCGATAGTCGAAACCATCCCT
*
84341731 TTTCATAGTCTATAGTAAAAAAA
66 TTTCATAGTCGATAGTAAAAAAA
* * * **
84341754 ATCCCTTTTCATAGTT-GCTGGTGGTCACCATCCCTTTTCATAGTTGATGGTCGCCACCATCCCT
1 ATCCCTTTTCATAGTTCGATGGTGGTCACCATCCCTTTTCATAGTCGATAGTCGAAACCATCCCT
** **
84341818 TTTCATAGTCGATAGTCGAAACT
66 TTTCATAGTCGATAGTAAAAAAA
* * ** * * * *
84341841 ATCCCTTTTCATAG-TCGATAGTTGAAACTATCCCTTTTTATA-TACGATGGTCAAAACCATCCC
1 ATCCCTTTTCATAGTTCGATGGTGGTCACCATCCCTTTTCATAGT-CGATAGTCGAAACCATCCC
84341904 TTTT
65 TTTT
84341908 TCATTGATCG
Statistics
Matches: 126, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
86 2 0.02
87 122 0.97
88 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.38
Consensus pattern (88 bp):
ATCCCTTTTCATAGTTCGATGGTGGTCACCATCCCTTTTCATAGTCGATAGTCGAAACCATCCCT
TTTCATAGTCGATAGTAAAAAAA
Found at i:84343923 original size:27 final size:27
Alignment explanation
Indices: 84343885--84343939 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
84343875 CTTAATTACA
84343885 TGATTTTTTTTACATATTTTATATGAT
1 TGATTTTTTTTACATATTTTATATGAT
84343912 TGATTTTTTTTACATATTTTATATGAT
1 TGATTTTTTTTACATATTTTATATGAT
84343939 T
1 T
84343940 TCATGTTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.25, C:0.04, G:0.07, T:0.64
Consensus pattern (27 bp):
TGATTTTTTTTACATATTTTATATGAT
Found at i:84344706 original size:36 final size:36
Alignment explanation
Indices: 84344655--84344728 Score: 103
Period size: 36 Copynumber: 2.1 Consensus size: 36
84344645 GGAGAAGTGC
* * * *
84344655 ATCAGTCAGAATAGATTTGAAAGGCTACTGAACTGA
1 ATCAATCAGAATAGATATGAAAGACTACTAAACTGA
*
84344691 ATCAATCAGAATAGATATGAAAGACTGCTAAACTGA
1 ATCAATCAGAATAGATATGAAAGACTACTAAACTGA
84344727 AT
1 AT
84344729 AGAGTTTATT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.43, C:0.14, G:0.19, T:0.24
Consensus pattern (36 bp):
ATCAATCAGAATAGATATGAAAGACTACTAAACTGA
Found at i:84346949 original size:29 final size:29
Alignment explanation
Indices: 84346917--84347231 Score: 265
Period size: 29 Copynumber: 10.8 Consensus size: 29
84346907 GGCTATCGAT
*
84346917 TATGAAAAGGGATGGTGACGACCGTCAAC
1 TATGAAAAGGGATGGTGACGACCATCAAC
** *
84346946 TATGAAAAGATATGGTGACGACCATCGAAT
1 TATGAAAAGGGATGGTGACGACCATC-AAC
* * ** * * ** *
84346976 TATGAAAATGGATAGCT-TTGGCTATTGAT
1 TATGAAAAGGGAT-GGTGACGACCATCAAC
*
84347005 TATGAAAAGGGATGGTGATGACCATCAAC
1 TATGAAAAGGGATGGTGACGACCATCAAC
* * *
84347034 CATGAAAAGGGATGGTGATGACCATCGAAT
1 TATGAAAAGGGATGGTGACGACCATC-AAC
* * * * *
84347064 TATGAAAAGGGATAGCT-TCGACTATCGAT
1 TATGAAAAGGGAT-GGTGACGACCATCAAC
* *
84347093 TATAAAAAGGGACGGTGACGACCATCAAC
1 TATGAAAAGGGATGGTGACGACCATCAAC
* *
84347122 TATGAAAAGGGATGGGGAAGACCATCAAC
1 TATGAAAAGGGATGGTGACGACCATCAAC
** * * * *
84347151 TATGAAAAAAGATGGTGGCAACCATTGAAT
1 TATGAAAAGGGATGGTGACGACCA-TCAAC
* *
84347181 TATGAAAAAGGATGGTGACAACCATCAAC
1 TATGAAAAGGGATGGTGACGACCATCAAC
84347210 TATGAAAAGGGATGGTGACGAC
1 TATGAAAAGGGATGGTGACGAC
84347232 AATCGTGATT
Statistics
Matches: 224, Mismatches: 55, Indels: 14
0.76 0.19 0.05
Matches are distributed among these distances:
28 4 0.02
29 155 0.69
30 61 0.27
31 4 0.02
ACGTcount: A:0.38, C:0.14, G:0.27, T:0.21
Consensus pattern (29 bp):
TATGAAAAGGGATGGTGACGACCATCAAC
Found at i:84347033 original size:88 final size:87
Alignment explanation
Indices: 84346889--84347236 Score: 405
Period size: 88 Copynumber: 4.0 Consensus size: 87
84346879 TCATCGACCA
*
84346889 ATGAAAATGGATAGTTGTGGCTATCGATTATGAAAAGGGATGGTGACGACCGTCAACTATGAAAA
1 ATGAAAATGGATAGTT-TGGCTATCGATTATGAAAAGGGATGGTGACGACCATCAACTATGAAAA
**
84346954 GATATGGTGACGACCATCGAATT
65 GGGATGGTGACGACCATCGAATT
* * *
84346977 ATGAAAATGGATAGCTTTGGCTATTGATTATGAAAAGGGATGGTGATGACCATCAACCATGAAAA
1 ATGAAAATGGATAG-TTTGGCTATCGATTATGAAAAGGGATGGTGACGACCATCAACTATGAAAA
*
84347042 GGGATGGTGATGACCATCGAATT
65 GGGATGGTGACGACCATCGAATT
* * * * *
84347065 ATGAAAAGGGATAGCTTCGACTATCGATTATAAAAAGGGACGGTGACGACCATCAACTATGAAAA
1 ATGAAAATGGATAG-TTTGGCTATCGATTATGAAAAGGGATGGTGACGACCATCAACTATGAAAA
* * *
84347130 GGGATGGGGAAGACCATC-AACT
65 GGGATGGTGACGACCATCGAATT
** * * * * *
84347152 ATGAAAAAAGAT-G-GTGGCAACCATTGAATTATGAAAAAGGATGGTGACAACCATCAACTATGA
1 ATGAAAATGGATAGTTTGG---CTATCG-ATTATGAAAAGGGATGGTGACGACCATCAACTATGA
*
84347215 AAAGGGATGGTGACGACAATCG
62 AAAGGGATGGTGACGACCATCG
84347237 TGATTCCACT
Statistics
Matches: 222, Mismatches: 32, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
84 1 0.00
86 1 0.00
87 17 0.08
88 201 0.91
89 2 0.01
ACGTcount: A:0.38, C:0.13, G:0.27, T:0.22
Consensus pattern (87 bp):
ATGAAAATGGATAGTTTGGCTATCGATTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAG
GGATGGTGACGACCATCGAATT
Found at i:84347218 original size:117 final size:117
Alignment explanation
Indices: 84347005--84347231 Score: 276
Period size: 117 Copynumber: 1.9 Consensus size: 117
84346995 GGCTATTGAT
* * ** **
84347005 TATGAAAAGGGATGGTGATGACCATCAACCATGAAAAGGGATGGTGATGACCATCGAATTATGAA
1 TATGAAAAGGGATGGGGAAGACCATCAACCATGAAAAAAGATGGTGACAACCATCGAATTATGAA
* * * * * *
84347070 AAGGGATAGCTTCGACTATCGATTATAAAAAGGGACGGTGACGACCATCAAC
66 AAAGGATAGCTACAACCATCAACTATAAAAAGGGACGGTGACGACCATCAAC
* * *
84347122 TATGAAAAGGGATGGGGAAGACCATCAACTATGAAAAAAGATGGTGGCAACCATTGAATTATGAA
1 TATGAAAAGGGATGGGGAAGACCATCAACCATGAAAAAAGATGGTGACAACCATCGAATTATGAA
* * *
84347187 AAAGGAT-GGTGACAACCATCAACTATGAAAAGGGATGGTGACGAC
66 AAAGGATAGCT-ACAACCATCAACTATAAAAAGGGACGGTGACGAC
84347232 AATCGTGATT
Statistics
Matches: 91, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
116 2 0.02
117 89 0.98
ACGTcount: A:0.40, C:0.14, G:0.27, T:0.19
Consensus pattern (117 bp):
TATGAAAAGGGATGGGGAAGACCATCAACCATGAAAAAAGATGGTGACAACCATCGAATTATGAA
AAAGGATAGCTACAACCATCAACTATAAAAAGGGACGGTGACGACCATCAAC
Found at i:84348964 original size:55 final size:55
Alignment explanation
Indices: 84348879--84349027 Score: 178
Period size: 55 Copynumber: 2.7 Consensus size: 55
84348869 TTATTGAGCC
* * * *
84348879 CGCACACTCAGTGCTATATAATCAAATCGCACACTTAGTGCCA-CATAGTCCATCT
1 CGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCCATCATA-TCCATCT
** * * * *
84348934 CGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTG-CATCATATTCATTT
1 CGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCCATCATATCCATCT
84348988 CGCACACTTAGTGCAACATAGTCAAAT-GCACACTTAGTGC
1 CGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGC
84349028 TGTACAATTT
Statistics
Matches: 79, Mismatches: 13, Indels: 5
0.81 0.13 0.05
Matches are distributed among these distances:
53 12 0.15
54 30 0.38
55 37 0.47
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCCATCATATCCATCT
Found at i:84348971 original size:27 final size:27
Alignment explanation
Indices: 84348879--84349027 Score: 156
Period size: 27 Copynumber: 5.5 Consensus size: 27
84348869 TTATTGAGCC
* * * * *
84348879 CGCACACTCAGTGCTATATAATCAAAT
1 CGCACACTTAGTGCAACATAGTCAATT
* *
84348906 CGCACACTTAGTGCCACATAGTCCATCT
1 CGCACACTTAGTGCAACATAGTCAAT-T
** *
84348934 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAACATAGTCAATT
* * *
84348961 CGCACACTTAGTGCATCATATTCATTT
1 CGCACACTTAGTGCAACATAGTCAATT
*
84348988 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCAACATAGTCAATT
84349015 -GCACACTTAGTGC
1 CGCACACTTAGTGC
84349028 TGTACAATTT
Statistics
Matches: 103, Mismatches: 18, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
26 13 0.13
27 66 0.64
28 24 0.23
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCAACATAGTCAATT
Found at i:84348991 original size:82 final size:80
Alignment explanation
Indices: 84348879--84349027 Score: 201
Period size: 82 Copynumber: 1.8 Consensus size: 80
84348869 TTATTGAGCC
* **
84348879 CGCACACTCAGTGCTATATAATCAAATCGCACACTTAGTGCCACATAGTCCATCTCGCACACTTA
1 CGCACACTCAGTGCTATATAATCAAATCGCACACTTAGTGCAACATAGT-CAAAT-GCACACTTA
84348944 GTGCCGCATGGTCAATT
64 GTGCCGCATGGTCAATT
* * **
84348961 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATGCACACTTAG
1 CGCACACTCAGTGCTAT-ATAATCAAATCGCACACTTAGTGCAACATAGTCAAATGCACACTTAG
84349025 TGC
65 TGC
84349028 TGTACAATTT
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
80 13 0.22
81 5 0.08
82 41 0.69
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (80 bp):
CGCACACTCAGTGCTATATAATCAAATCGCACACTTAGTGCAACATAGTCAAATGCACACTTAGT
GCCGCATGGTCAATT
Found at i:84350729 original size:33 final size:33
Alignment explanation
Indices: 84350692--84350755 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
84350682 GTCCCGAAAC
*
84350692 CACTTCCCGACTAGGGTAAATTTTGGGCTGTTA
1 CACTTCCCGACTAGGGTAAATTTAGGGCTGTTA
* * *
84350725 CACTTTCCGACTAGGGTCACTTTAGGGCTGT
1 CACTTCCCGACTAGGGTAAATTTAGGGCTGT
84350756 CACAACTCTC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.19, C:0.23, G:0.25, T:0.33
Consensus pattern (33 bp):
CACTTCCCGACTAGGGTAAATTTAGGGCTGTTA
Found at i:84356998 original size:40 final size:40
Alignment explanation
Indices: 84356961--84357265 Score: 411
Period size: 40 Copynumber: 7.7 Consensus size: 40
84356951 GCTACTCGTT
* *
84356961 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
84357001 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
84357041 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
84357081 CAAATGCCTTCGGGATTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
84357121 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
84357161 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
84357200 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
84357241 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
84357266 CATCATTCAA
Statistics
Matches: 240, Mismatches: 20, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
38 2 0.01
39 32 0.13
40 193 0.80
41 13 0.05
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:84362855 original size:26 final size:26
Alignment explanation
Indices: 84362813--84362889 Score: 91
Period size: 26 Copynumber: 3.0 Consensus size: 26
84362803 ACACTAAAAT
* * *
84362813 CGCAGCAAAGCTACCAGAAATAGTGA
1 CGCAGCAAAGCTGCCAGAAACAGTAA
* * *
84362839 TGCAGCAAAGTTGCCAGTAACAGTAA
1 CGCAGCAAAGCTGCCAGAAACAGTAA
*
84362865 CGCAGCAAAGCTGCCAGTAACAGTA
1 CGCAGCAAAGCTGCCAGAAACAGTA
84362890 TATGTGGCAA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.39, C:0.23, G:0.23, T:0.14
Consensus pattern (26 bp):
CGCAGCAAAGCTGCCAGAAACAGTAA
Found at i:84363082 original size:27 final size:27
Alignment explanation
Indices: 84363052--84363394 Score: 368
Period size: 27 Copynumber: 12.7 Consensus size: 27
84363042 TCAACTCCTT
** * *
84363052 GGGGTATAACAGTTATTTTACCCTTTG
1 GGGGTATTTCAGTCATTTTACCCTTCG
*
84363079 GGGGTATTTCAATCATTTTACCCTTCG
1 GGGGTATTTCAGTCATTTTACCCTTCG
* *
84363106 GGGGTACTTCGGTCATTTTACCCTTCG
1 GGGGTATTTCAGTCATTTTACCCTTCG
** *
84363133 AAGGTATTTCAGTCATTTTACCCTTCA
1 GGGGTATTTCAGTCATTTTACCCTTCG
**
84363160 GGGGTATTTCAGTCATTTTACCCTTTA
1 GGGGTATTTCAGTCATTTTACCCTTCG
* * * * *
84363187 AGGGCATTTCGGTTATTTTACCCTTCA
1 GGGGTATTTCAGTCATTTTACCCTTCG
* *
84363214 AGGGAATTTC-GATCATTTTACCCTTC-
1 GGGGTATTTCAG-TCATTTTACCCTTCG
*
84363240 GAGGTATTTCAGTCATTTTACCCTTCG
1 GGGGTATTTCAGTCATTTTACCCTTCG
* * *
84363267 AGGGG-ATATCGGTTATTTTACCCTTCG
1 -GGGGTATTTCAGTCATTTTACCCTTCG
** *
84363294 GGGGTATTTTGGTCATTTTACCCTTTG
1 GGGGTATTTCAGTCATTTTACCCTTCG
*
84363321 GGGGTATTTTAGTCATTTTACCCTTCG
1 GGGGTATTTCAGTCATTTTACCCTTCG
*
84363348 AGGGTATTTCAGTCATTTTACCCTTCG
1 GGGGTATTTCAGTCATTTTACCCTTCG
* **
84363375 AGGGTATTTTGGTCATTTTA
1 GGGGTATTTCAGTCATTTTA
84363395 GGCCTATTAC
Statistics
Matches: 271, Mismatches: 40, Indels: 10
0.84 0.12 0.03
Matches are distributed among these distances:
26 26 0.10
27 242 0.89
28 3 0.01
ACGTcount: A:0.18, C:0.20, G:0.20, T:0.42
Consensus pattern (27 bp):
GGGGTATTTCAGTCATTTTACCCTTCG
Found at i:84367518 original size:12 final size:12
Alignment explanation
Indices: 84367503--84367528 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
84367493 GTTCGTATGT
84367503 TTAAATTGCATG
1 TTAAATTGCATG
84367515 TTAAATTGCATG
1 TTAAATTGCATG
84367527 TT
1 TT
84367529 TTTAATGCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (12 bp):
TTAAATTGCATG
Found at i:84367646 original size:29 final size:29
Alignment explanation
Indices: 84367616--84367911 Score: 224
Period size: 29 Copynumber: 10.1 Consensus size: 29
84367606 AGTTTTGGCT
*
84367616 ATCGATTATGAAAAGGGATGGTGACGACT
1 ATCGATTATGAAAAGGGATGGTGACGACC
* *
84367645 ATCAACTATGAAAAGGGATGGTGACGACC
1 ATCGATTATGAAAAGGGATGGTGACGACC
* * * *
84367674 ATCAAATTATGAAAAGGGATAGAT-TC-AGCT
1 ATC-GATTATGAAAAGGGAT-GGTGACGA-CC
*
84367704 ATCGATTATGAAAAGGGATGGTGATGACC
1 ATCGATTATGAAAAGGGATGGTGACGACC
* * * * *
84367733 ATCGAACTATGAAAAGGGATAGCT-TCGGCT
1 ATCG-ATTATGAAAAGGGAT-GGTGACGACC
84367763 ATCGATTAT-AAAAGGGGATGGTGACGACC
1 ATCGATTATGAAAA-GGGATGGTGACGACC
** * * *
84367792 ATTAACTATGAAAAGGGATCGTGAGGACC
1 ATCGATTATGAAAAGGGATGGTGACGACC
* * * * * *
84367821 ATCAACTATGAAAAAGGATAGTAAAGACC
1 ATCGATTATGAAAAGGGATGGTGACGACC
* ** * *
84367850 ATCGAATTATGAAAAGGGATAGCT-TTGGCT
1 ATCG-ATTATGAAAAGGGAT-GGTGACGACC
84367880 ATCGATTATGAAAAGGGATGGTGACGACC
1 ATCGATTATGAAAAGGGATGGTGACGACC
84367909 ATC
1 ATC
84367912 AATTTTCCAC
Statistics
Matches: 207, Mismatches: 47, Indels: 26
0.74 0.17 0.09
Matches are distributed among these distances:
28 10 0.05
29 128 0.62
30 64 0.31
31 5 0.02
ACGTcount: A:0.38, C:0.13, G:0.27, T:0.23
Consensus pattern (29 bp):
ATCGATTATGAAAAGGGATGGTGACGACC
Found at i:84367685 original size:59 final size:59
Alignment explanation
Indices: 84367620--84367913 Score: 301
Period size: 59 Copynumber: 5.0 Consensus size: 59
84367610 TTGGCTATCG
* * * *
84367620 ATTATGAAAAGGGAT-GGTGACGACTATCAACTATGAAAAGGGATGGTGACGACCATCAA
1 ATTATGAAAAGGGATAGCT-TCGACTATCGATTATGAAAAGGGATGGTGACGACCATCAA
* * *
84367679 ATTATGAAAAGGGATAGATTC-AGCTATCGATTATGAAAAGGGATGGTGATGACCATCGA
1 ATTATGAAAAGGGATAGCTTCGA-CTATCGATTATGAAAAGGGATGGTGACGACCATCAA
* * *
84367738 ACTATGAAAAGGGATAGCTTCGGCTATCGATTAT-AAAAGGGGATGGTGACGACCAT-TA
1 ATTATGAAAAGGGATAGCTTCGACTATCGATTATGAAAA-GGGATGGTGACGACCATCAA
* * ** * * * * * * * *
84367796 ACTATGAAAAGGGATCG-TGAGGACCATCAACTATGAAAAAGGATAGTAAAGACCATCGA
1 ATTATGAAAAGGGATAGCT-TCGACTATCGATTATGAAAAGGGATGGTGACGACCATCAA
* *
84367855 ATTATGAAAAGGGATAGCTTTGGCTATCGATTATGAAAAGGGATGGTGACGACCATCAA
1 ATTATGAAAAGGGATAGCTTCGACTATCGATTATGAAAAGGGATGGTGACGACCATCAA
84367914 TTTTCCACTT
Statistics
Matches: 191, Mismatches: 36, Indels: 16
0.79 0.15 0.07
Matches are distributed among these distances:
57 1 0.01
58 44 0.23
59 143 0.75
60 3 0.02
ACGTcount: A:0.38, C:0.13, G:0.27, T:0.22
Consensus pattern (59 bp):
ATTATGAAAAGGGATAGCTTCGACTATCGATTATGAAAAGGGATGGTGACGACCATCAA
Found at i:84367771 original size:88 final size:86
Alignment explanation
Indices: 84367594--84367913 Score: 331
Period size: 88 Copynumber: 3.6 Consensus size: 86
84367584 ATATCGACTA
* * *
84367594 ATGAAAATGGATAGTTTTGGCTATCGATTATGAAAAGGGATGGTGACGACTATCAACTATGAAAA
1 ATGAAAAGGGATAG-TTTAGCTATCGATTATGAAAAGGGATGGTGACGACCATCAACTATGAAAA
* * *
84367659 GGGATGGTGACGACCATCAAATT
65 GGGATAGTAACGACCATC-GATT
* *
84367682 ATGAAAAGGGATAGATTCAGCTATCGATTATGAAAAGGGATGGTGATGACCATCGAACTATGAAA
1 ATGAAAAGGGATAG-TTTAGCTATCGATTATGAAAAGGGATGGTGACGACCATC-AACTATGAAA
* * *
84367747 AGGGATAGCT-TCGGCTATCGATT
64 AGGGATAG-TAACGACCATCGATT
* * * ** * * *
84367770 AT-AAAAGGGGAT-GGTGACGACCATTAACTATGAAAAGGGATCGTGAGGACCATCAACTATGAA
1 ATGAAAA-GGGATAGTTTA-G-CTATCGATTATGAAAAGGGATGGTGACGACCATCAACTATGAA
* *
84367833 AAAGGATAGTAAAGACCATCGAATT
63 AAGGGATAGTAACGACCATCG-ATT
*
84367858 ATGAAAAGGGATAGCTTTGGCTATCGATTATGAAAAGGGATGGTGACGACCATCAA
1 ATGAAAAGGGATAG-TTTAGCTATCGATTATGAAAAGGGATGGTGACGACCATCAA
84367914 TTTTCCACTT
Statistics
Matches: 189, Mismatches: 33, Indels: 20
0.78 0.14 0.08
Matches are distributed among these distances:
86 3 0.02
87 29 0.15
88 126 0.67
89 29 0.15
90 2 0.01
ACGTcount: A:0.38, C:0.12, G:0.27, T:0.23
Consensus pattern (86 bp):
ATGAAAAGGGATAGTTTAGCTATCGATTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAG
GGATAGTAACGACCATCGATT
Found at i:84370725 original size:15 final size:15
Alignment explanation
Indices: 84370707--84370736 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
84370697 TAATAAGGAG
84370707 GTAAATAAAAGAAAA
1 GTAAATAAAAGAAAA
*
84370722 GTAAATAAATGAAAA
1 GTAAATAAAAGAAAA
84370737 ACAAGAAATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.13, T:0.17
Consensus pattern (15 bp):
GTAAATAAAAGAAAA
Found at i:84376497 original size:25 final size:25
Alignment explanation
Indices: 84376469--84376517 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
84376459 TTATTTGTTT
84376469 TATTATAA-CATTATAATATAATATG
1 TATTATAACCATTATAA-ATAATATG
*
84376494 TATTATAACCTTTATAAATAATAT
1 TATTATAACCATTATAAATAATAT
84376518 AAAAACTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.47, C:0.06, G:0.02, T:0.45
Consensus pattern (25 bp):
TATTATAACCATTATAAATAATATG
Found at i:84379675 original size:27 final size:27
Alignment explanation
Indices: 84379645--84379820 Score: 176
Period size: 27 Copynumber: 6.5 Consensus size: 27
84379635 ATTGAGTCCA
* *
84379645 CACACTCAGTGCTATATAATCAACTCG
1 CACACTTAGTGCTACATAATCAACTCG
* *
84379672 CACACTTAGTGCTACGTAATCAAATCG
1 CACACTTAGTGCTACATAATCAACTCG
*
84379699 CACACTTAGTGCTACATAGTCAAACTCG
1 CACACTTAGTGCTACATAATC-AACTCG
* ** *
84379727 CACACTTAGTG-TCGCATGGTCAATTCG
1 CACACTTAGTGCT-ACATAATCAACTCG
* **
84379754 CACACTTAGTGC-ATCATATTCATTTCG
1 CACACTTAGTGCTA-CATAATCAACTCG
* * *
84379781 CACACTTAGTGCAACATAGTCAAATCG
1 CACACTTAGTGCTACATAATCAACTCG
84379808 CACACTTAGTGCT
1 CACACTTAGTGCT
84379821 GTACAATTTA
Statistics
Matches: 126, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
27 103 0.82
28 23 0.18
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (27 bp):
CACACTTAGTGCTACATAATCAACTCG
Found at i:84379782 original size:82 final size:81
Alignment explanation
Indices: 84379664--84379818 Score: 231
Period size: 82 Copynumber: 1.9 Consensus size: 81
84379654 TGCTATATAA
* *
84379664 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
84379729 CACTTAGTGTCGCATGG
65 CACTTAGTGTCGCATGG
* * **
84379746 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
84379810 CACTTAGTG
65 CACTTAGTG
84379819 CTGTACAATT
Statistics
Matches: 66, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.23
82 51 0.77
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGTCGCATGG
Found at i:84382082 original size:13 final size:13
Alignment explanation
Indices: 84382066--84382096 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
84382056 CTTTACTATC
*
84382066 AAGTACATATGCA
1 AAGTACATAGGCA
84382079 AAGTACATAGGCA
1 AAGTACATAGGCA
84382092 AAGTA
1 AAGTA
84382097 AGCTTCGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.19
Consensus pattern (13 bp):
AAGTACATAGGCA
Found at i:84386506 original size:19 final size:19
Alignment explanation
Indices: 84386482--84386540 Score: 91
Period size: 19 Copynumber: 3.1 Consensus size: 19
84386472 TACTCACAAA
84386482 TTAATTAATTAAATAACAT
1 TTAATTAATTAAATAACAT
84386501 TTAATTAATTAAATAACAT
1 TTAATTAATTAAATAACAT
* *
84386520 TTTATTGAAGTAAATAACAT
1 TTAATT-AATTAAATAACAT
84386540 T
1 T
84386541 ATATTTCACT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
19 24 0.65
20 13 0.35
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.42
Consensus pattern (19 bp):
TTAATTAATTAAATAACAT
Found at i:84389405 original size:12 final size:12
Alignment explanation
Indices: 84389388--84389413 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
84389378 AAAAAATGAT
84389388 AAAATAAAATAA
1 AAAATAAAATAA
84389400 AAAATAAAATAA
1 AAAATAAAATAA
84389412 AA
1 AA
84389414 TGAAGTATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (12 bp):
AAAATAAAATAA
Found at i:84390379 original size:143 final size:143
Alignment explanation
Indices: 84390094--84390430 Score: 442
Period size: 143 Copynumber: 2.4 Consensus size: 143
84390084 CTTTAGAGAG
* * *
84390094 ATAAGATTCACTATCTTCAGTTTGCTCCACTGCAACTTTAGGGAGATAAGGCTAGTGGCTTCAAT
1 ATAAGATTCGCTGTCTTCAGTTTGCTCCGCTGCAACTTTAGGGAGATAAGGCTAGTGGCTTCAAT
** * * * * *
84390159 CTGCTCCACTGCAACTTTAGGAAGATAATATTTGCCATAATTTGTAGCTTTAACGTATTCCACTG
66 CTAATCCACTACAACTTCAGGAAGATAAAATCTGCCATAACTTGTAGCTTTAACGTATTCCACTG
84390224 CAACGCCAGGGAA
131 CAACGCCAGGGAA
* * * * *
84390237 CTAATATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAAT
1 ATAAGATTCGCTGTCTTCAGTTTGCTCCGCTGCAACTTTAGGGAGATAAGGCTAGTGGCTTCAAT
* * * *
84390302 CTAATCCACTACAACTTCAGGAAGATAAAATCTGTCATAACTTGTAGCTTTAATC-TGTTCGATT
66 CTAATCCACTACAACTTCAGGAAGATAAAATCTGCCATAACTTGTAGCTTTAA-CGTATTCCACT
* * *
84390366 GTAATGCCGGGGAA
130 GCAACGCCAGGGAA
* *
84390380 ATAAGATTCGCTGTCTTCAGTTTGCTCTGCTACAACTTTAGGGAGATAAGG
1 ATAAGATTCGCTGTCTTCAGTTTGCTCCGCTGCAACTTTAGGGAGATAAGG
84390431 TTGGGTTTTC
Statistics
Matches: 165, Mismatches: 28, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
143 164 0.99
144 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.31
Consensus pattern (143 bp):
ATAAGATTCGCTGTCTTCAGTTTGCTCCGCTGCAACTTTAGGGAGATAAGGCTAGTGGCTTCAAT
CTAATCCACTACAACTTCAGGAAGATAAAATCTGCCATAACTTGTAGCTTTAACGTATTCCACTG
CAACGCCAGGGAA
Found at i:84390515 original size:7 final size:6
Alignment explanation
Indices: 84390498--84390540 Score: 54
Period size: 6 Copynumber: 7.5 Consensus size: 6
84390488 TTAGCCTCTC
* *
84390498 CTTTTT CTTTTT CTTTTT CTTTTT -TCTTT C-TTTT CTTTCT CTT
1 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTT
84390541 CGTTCCTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
5 8 0.25
6 24 0.75
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (6 bp):
CTTTTT
Found at i:84396766 original size:16 final size:18
Alignment explanation
Indices: 84396745--84396781 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
84396735 TGTTATTTCG
84396745 AAATGA-AAAAGAAAA-A
1 AAATGATAAAAGAAAATA
84396761 AAATGATAAAAGAAAATA
1 AAATGATAAAAGAAAATA
84396779 AAA
1 AAA
84396782 CAAAAATGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.32
17 9 0.47
18 4 0.21
ACGTcount: A:0.78, C:0.00, G:0.11, T:0.11
Consensus pattern (18 bp):
AAATGATAAAAGAAAATA
Found at i:84406533 original size:39 final size:40
Alignment explanation
Indices: 84406438--84406586 Score: 175
Period size: 39 Copynumber: 3.8 Consensus size: 40
84406428 TTGAATGCTG
*
84406438 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
84406476 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
* *
84406517 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
84406556 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA
84406587 CTTACTGGAT
Statistics
Matches: 97, Mismatches: 6, Indels: 13
0.84 0.05 0.11
Matches are distributed among these distances:
39 53 0.55
40 32 0.33
41 11 0.11
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:84406573 original size:79 final size:79
Alignment explanation
Indices: 84406438--84406586 Score: 198
Period size: 79 Copynumber: 1.9 Consensus size: 79
84406428 TTGAATGCTG
84406438 TCCGGGCTAAGTCCCGAAGGCTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATTTG
84406503 TGCGAGATACTAAT
66 TGCGAGATACTAAT
* * **
84406517 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGCA
84406578 TTTGTGCGA
62 TTTGTGCGA
84406587 CTTACTGGAT
Statistics
Matches: 62, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
78 10 0.16
79 44 0.71
80 8 0.13
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGATACTAAT
Found at i:84407908 original size:44 final size:45
Alignment explanation
Indices: 84407834--84407918 Score: 154
Period size: 44 Copynumber: 1.9 Consensus size: 45
84407824 TTGGCCCGAC
84407834 CAAAAATTCTAGAAAAAAAATATGTAGATGGGCATATGAGTGTAG
1 CAAAAATTCTAGAAAAAAAATATGTAGATGGGCATATGAGTGTAG
*
84407879 CAAAAATTTTAG-AAAAAAATATGTAGATGGGCATATGAGT
1 CAAAAATTCTAGAAAAAAAATATGTAGATGGGCATATGAGT
84407919 CTAGTTTCAG
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
44 28 0.72
45 11 0.28
ACGTcount: A:0.47, C:0.06, G:0.21, T:0.26
Consensus pattern (45 bp):
CAAAAATTCTAGAAAAAAAATATGTAGATGGGCATATGAGTGTAG
Found at i:84413081 original size:85 final size:85
Alignment explanation
Indices: 84412938--84413116 Score: 358
Period size: 85 Copynumber: 2.1 Consensus size: 85
84412928 GGCCGGCCAT
84412938 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
84413003 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
84413023 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
84413088 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
84413108 GAGCATGGG
1 GAGCATGGG
84413117 CAATAAAATA
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 94 1.00
ACGTcount: A:0.38, C:0.08, G:0.27, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:84425546 original size:16 final size:16
Alignment explanation
Indices: 84425516--84425546 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
84425506 GAGCATTGAA
*
84425516 AAAGAAAATGAAAAAG
1 AAAGAAAATAAAAAAG
84425532 AAAGAAAATAAAAAA
1 AAAGAAAATAAAAAA
84425547 CTAAAAGAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.81, C:0.00, G:0.13, T:0.06
Consensus pattern (16 bp):
AAAGAAAATAAAAAAG
Found at i:84436924 original size:40 final size:39
Alignment explanation
Indices: 84436809--84436928 Score: 168
Period size: 39 Copynumber: 3.1 Consensus size: 39
84436799 TCCTCGTTCA
* * *
84436809 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCAC
**
84436848 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCAC
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCAC
* *
84436887 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCAC
84436927 AA
1 AA
84436929 AGGCCTTTGG
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
39 36 0.51
40 35 0.49
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCAC
Found at i:84436935 original size:40 final size:40
Alignment explanation
Indices: 84436807--84436991 Score: 178
Period size: 40 Copynumber: 4.7 Consensus size: 40
84436797 GCTCCTCGTT
* * *
84436807 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * **
84436847 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
84436886 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * * *
84436926 CAAAGGCCTT-TGGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
84436967 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
84436992 CAGCATTCAA
Statistics
Matches: 120, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 37 0.31
40 72 0.60
41 11 0.09
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:84443695 original size:40 final size:40
Alignment explanation
Indices: 84443651--84443846 Score: 281
Period size: 40 Copynumber: 4.9 Consensus size: 40
84443641 GGATATAGCT
* *
84443651 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* *
84443691 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGATT-TGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTATAGTA
*
84443731 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-AATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
* *
84443771 ACTCGCACATATGCCTTCGGGACTTAGCCCGG-AATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
84443811 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
84443847 CATCCGAATA
Statistics
Matches: 142, Mismatches: 10, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
40 139 0.98
41 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:84455211 original size:24 final size:27
Alignment explanation
Indices: 84455178--84455231 Score: 69
Period size: 25 Copynumber: 2.1 Consensus size: 27
84455168 AAACCTCTTC
* *
84455178 TAAAAGAAAAC-TCAAGAGAA-ATTCT
1 TAAAAGAAAACTTAAAGAGAATATTAT
84455203 TAAAA-AAAACTTAAAGAGAATATTAT
1 TAAAAGAAAACTTAAAGAGAATATTAT
84455229 TAA
1 TAA
84455232 CTCAAACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 5 0.20
25 13 0.52
26 7 0.28
ACGTcount: A:0.59, C:0.07, G:0.09, T:0.24
Consensus pattern (27 bp):
TAAAAGAAAACTTAAAGAGAATATTAT
Found at i:84456395 original size:34 final size:34
Alignment explanation
Indices: 84456357--84456530 Score: 231
Period size: 34 Copynumber: 5.1 Consensus size: 34
84456347 CCATAACACT
* * *
84456357 AATACTCATCCATTTGATATCCTGCCACAATGCC
1 AATACTCATTCATTTAACATCCTGCCACAATGCC
* **
84456391 AATACTCATTCATTTAACATCCCGTGACAATGCC
1 AATACTCATTCATTTAACATCCTGCCACAATGCC
* *
84456425 AATACTCATTCATTTAACATCCTACCACAAAGCC
1 AATACTCATTCATTTAACATCCTGCCACAATGCC
* * ** *
84456459 AATACTCATTCATATAATATCCCACCGCAATGCC
1 AATACTCATTCATTTAACATCCTGCCACAATGCC
84456493 AATACTCATTCATTTAACATCCTGCCACAATGCC
1 AATACTCATTCATTTAACATCCTGCCACAATGCC
84456527 AATA
1 AATA
84456531 TTTCATAACA
Statistics
Matches: 119, Mismatches: 21, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 119 1.00
ACGTcount: A:0.34, C:0.31, G:0.06, T:0.28
Consensus pattern (34 bp):
AATACTCATTCATTTAACATCCTGCCACAATGCC
Found at i:84456788 original size:12 final size:13
Alignment explanation
Indices: 84456771--84456803 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
84456761 AAACAATAAT
84456771 TATTAAAAATC-A
1 TATTAAAAATCAA
84456783 TATTAAAAAATCAA
1 TATT-AAAAATCAA
84456797 TATTAAA
1 TATTAAA
84456804 GATTAAGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 4 0.21
13 10 0.53
14 5 0.26
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (13 bp):
TATTAAAAATCAA
Found at i:84456793 original size:13 final size:14
Alignment explanation
Indices: 84456771--84456803 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
84456761 AAACAATAAT
84456771 TATT-AAAAATC-A
1 TATTAAAAAATCAA
84456783 TATTAAAAAATCAA
1 TATTAAAAAATCAA
84456797 TATTAAA
1 TATTAAA
84456804 GATTAAGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 4 0.21
13 7 0.37
14 8 0.42
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (14 bp):
TATTAAAAAATCAA
Found at i:84459313 original size:41 final size:41
Alignment explanation
Indices: 84459263--84459340 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 41
84459253 AATGTTGTCT
* * *
84459263 AGGCTGTGTCGTGACA-TAGGGTTCGGGTGTTGCAACATAAG
1 AGGCAGTGTCGCGACATTAGGGTTC-GATGTTGCAACATAAG
*
84459304 AGGCAGTGTCGCGACATTAGGTTTCGATGTTGCAACA
1 AGGCAGTGTCGCGACATTAGGGTTCGATGTTGCAACA
84459341 CAAATGCCTG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
41 25 0.78
42 7 0.22
ACGTcount: A:0.23, C:0.17, G:0.33, T:0.27
Consensus pattern (41 bp):
AGGCAGTGTCGCGACATTAGGGTTCGATGTTGCAACATAAG
Found at i:84467559 original size:9 final size:9
Alignment explanation
Indices: 84467545--84467569 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
84467535 AAACCATTTC
84467545 CATGTAATT
1 CATGTAATT
84467554 CATGTAATT
1 CATGTAATT
84467563 CATGTAA
1 CATGTAA
84467570 ATACCTGTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40
Consensus pattern (9 bp):
CATGTAATT
Found at i:84467716 original size:25 final size:25
Alignment explanation
Indices: 84467685--84467752 Score: 100
Period size: 25 Copynumber: 2.7 Consensus size: 25
84467675 GTTGTAAACA
*
84467685 GTAAGCTCCTCCGAGCTGAATAATG
1 GTAAGCTCCTCCGAGCTGAATAACG
*
84467710 GTAAGCTCCTCCGAGTTGAATAACG
1 GTAAGCTCCTCCGAGCTGAATAACG
* *
84467735 GTAAGCTCATACGAGCTG
1 GTAAGCTCCTCCGAGCTG
84467753 TAATCGGTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.24
Consensus pattern (25 bp):
GTAAGCTCCTCCGAGCTGAATAACG
Found at i:84472033 original size:34 final size:34
Alignment explanation
Indices: 84471976--84472051 Score: 107
Period size: 34 Copynumber: 2.2 Consensus size: 34
84471966 GAGTTAGTTT
*
84471976 ATTAACTTTAGTTCAGCTCAAATAAGTGATAGTA
1 ATTAATTTTAGTTCAGCTCAAATAAGTGATAGTA
* * * *
84472010 ATTCATTTTATTTCAGCTTAAATAAGTGTTAGTA
1 ATTAATTTTAGTTCAGCTCAAATAAGTGATAGTA
84472044 ATTAATTT
1 ATTAATTT
84472052 GTTTAAATCT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.36, C:0.09, G:0.12, T:0.43
Consensus pattern (34 bp):
ATTAATTTTAGTTCAGCTCAAATAAGTGATAGTA
Found at i:84473609 original size:19 final size:18
Alignment explanation
Indices: 84473574--84473609 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
84473564 TTACGAAAAT
*
84473574 TAAAAAAAATGAAAAGTA
1 TAAAAAAAAGGAAAAGTA
84473592 TAAAAAAAAGGAAGAAGT
1 TAAAAAAAAGGAA-AAGT
84473610 GAAAAGTCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.69, C:0.00, G:0.17, T:0.14
Consensus pattern (18 bp):
TAAAAAAAAGGAAAAGTA
Found at i:84474566 original size:10 final size:10
Alignment explanation
Indices: 84474553--84474601 Score: 55
Period size: 10 Copynumber: 4.9 Consensus size: 10
84474543 AGCTCAAATA
84474553 AGCTCATTTG
1 AGCTCATTTG
*
84474563 AGCTCATTTT
1 AGCTCATTTG
*
84474573 AGCTCGTTTG
1 AGCTCATTTG
84474583 AGCTCAATTT-
1 AGCTC-ATTTG
*
84474593 AGCTTATTT
1 AGCTCATTT
84474602 TCAGCTCGTT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
9 4 0.12
10 26 0.79
11 3 0.09
ACGTcount: A:0.20, C:0.18, G:0.16, T:0.45
Consensus pattern (10 bp):
AGCTCATTTG
Found at i:84474593 original size:20 final size:20
Alignment explanation
Indices: 84474541--84474601 Score: 77
Period size: 20 Copynumber: 3.0 Consensus size: 20
84474531 TGAACTACAC
* *
84474541 TGAGCTCAAATAAGCTCATT
1 TGAGCTCAATTTAGCTCATT
* *
84474561 TGAGCTCATTTTAGCTCGTT
1 TGAGCTCAATTTAGCTCATT
*
84474581 TGAGCTCAATTTAGCTTATT
1 TGAGCTCAATTTAGCTCATT
84474601 T
1 T
84474602 TCAGCTCGTT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.25, C:0.18, G:0.16, T:0.41
Consensus pattern (20 bp):
TGAGCTCAATTTAGCTCATT
Found at i:84474689 original size:20 final size:20
Alignment explanation
Indices: 84474664--84474711 Score: 71
Period size: 20 Copynumber: 2.4 Consensus size: 20
84474654 TCAATTTCAT
84474664 ATAGCTCATGA-CTGAATTTC
1 ATAGCTCATGATC-GAATTTC
84474684 ATAGCTCATGATCGAATTTC
1 ATAGCTCATGATCGAATTTC
*
84474704 CTAGCTCA
1 ATAGCTCA
84474712 AATTAGTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 25 0.96
21 1 0.04
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (20 bp):
ATAGCTCATGATCGAATTTC
Found at i:84475842 original size:6 final size:6
Alignment explanation
Indices: 84475833--84475886 Score: 65
Period size: 6 Copynumber: 9.0 Consensus size: 6
84475823 AACGAAGAGG
** *
84475833 AAGAAA AAGAAA AAGAAA GTGAAA AAGAAA TAGAAA ACA-AAA AAGAAA
1 AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA A-AGAAA AAGAAA
84475881 AAGAAA
1 AAGAAA
84475887 TTACAAGCAA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
5 1 0.03
6 38 0.95
7 1 0.03
ACGTcount: A:0.78, C:0.02, G:0.17, T:0.04
Consensus pattern (6 bp):
AAGAAA
Found at i:84475887 original size:24 final size:24
Alignment explanation
Indices: 84475853--84475904 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
84475843 AAAAGAAAGT
84475853 GAAAAAGAAA-TAGAAAACAAAAAA
1 GAAAAAGAAATTA-AAAACAAAAAA
* *
84475877 GAAAAAGAAATTACAAGCAAAAAA
1 GAAAAAGAAATTAAAAACAAAAAA
84475901 GAAA
1 GAAA
84475905 TCGAAAAAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 23 0.92
25 2 0.08
ACGTcount: A:0.75, C:0.06, G:0.13, T:0.06
Consensus pattern (24 bp):
GAAAAAGAAATTAAAAACAAAAAA
Found at i:84475986 original size:16 final size:18
Alignment explanation
Indices: 84475965--84476003 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
84475955 ATTGAGATTG
84475965 AGAAAAA-A-ATTGAAAA
1 AGAAAAAGATATTGAAAA
*
84475981 AGAAAAAGATGTTGAAAA
1 AGAAAAAGATATTGAAAA
84475999 AGAAA
1 AGAAA
84476004 CGAGAGAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 7 0.35
17 1 0.05
18 12 0.60
ACGTcount: A:0.69, C:0.00, G:0.18, T:0.13
Consensus pattern (18 bp):
AGAAAAAGATATTGAAAA
Found at i:84477861 original size:34 final size:34
Alignment explanation
Indices: 84477817--84477892 Score: 125
Period size: 34 Copynumber: 2.2 Consensus size: 34
84477807 GAGTTAGTTT
*
84477817 ATTAACTTTAGTTCAGCTCAAATAAGTGTTAATA
1 ATTAATTTTAGTTCAGCTCAAATAAGTGTTAATA
* *
84477851 ATTAATTTTAGTTCAGCTTAAATAAGTGTTAGTA
1 ATTAATTTTAGTTCAGCTCAAATAAGTGTTAATA
84477885 ATTAATTT
1 ATTAATTT
84477893 GTTTAAATCT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.37, C:0.08, G:0.12, T:0.43
Consensus pattern (34 bp):
ATTAATTTTAGTTCAGCTCAAATAAGTGTTAATA
Found at i:84482885 original size:14 final size:15
Alignment explanation
Indices: 84482866--84482913 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
84482856 TCTCTTTCCT
*
84482866 TTTTTTTCGAA-TTA
1 TTTTTTTCAAATTTA
84482880 TTTTTTTCAAATTTA
1 TTTTTTTCAAATTTA
*
84482895 TTTTTTTAAAATTT-
1 TTTTTTTCAAATTTA
84482909 TTTTT
1 TTTTT
84482914 AATTCAATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
14 15 0.48
15 16 0.52
ACGTcount: A:0.23, C:0.04, G:0.02, T:0.71
Consensus pattern (15 bp):
TTTTTTTCAAATTTA
Found at i:84482981 original size:10 final size:10
Alignment explanation
Indices: 84482963--84482997 Score: 52
Period size: 11 Copynumber: 3.3 Consensus size: 10
84482953 TTACACCTTG
84482963 AATTTTTTTC
1 AATTTTTTTC
84482973 AAATTTTTTTC
1 -AATTTTTTTC
84482984 AATTTTTTTAC
1 AATTTTTTT-C
84482995 AAT
1 AAT
84482998 GACTTCGACA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 9 0.39
11 14 0.61
ACGTcount: A:0.29, C:0.09, G:0.00, T:0.63
Consensus pattern (10 bp):
AATTTTTTTC
Found at i:84505485 original size:24 final size:24
Alignment explanation
Indices: 84505449--84505497 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
84505439 ATTTTTATTA
* *
84505449 AAATTTTTTATTTGCTGCTAAACC
1 AAATTTTTGATTTGCTGCAAAACC
84505473 AAATTTTTGATTTGCTGCAAAACC
1 AAATTTTTGATTTGCTGCAAAACC
84505497 A
1 A
84505498 TCTCATTGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.33, C:0.16, G:0.10, T:0.41
Consensus pattern (24 bp):
AAATTTTTGATTTGCTGCAAAACC
Found at i:84508928 original size:28 final size:27
Alignment explanation
Indices: 84508865--84509016 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
84508855 ATATTAAGTC
* *
84508865 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
84508892 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
84508920 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
84508947 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
84508975 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
84509002 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
84509017 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:84508949 original size:55 final size:55
Alignment explanation
Indices: 84508865--84509041 Score: 264
Period size: 55 Copynumber: 3.2 Consensus size: 55
84508855 ATATTAAGTC
* * *
84508865 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
84508920 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * *
84508975 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAA-TCAAACT
84509031 CGCACACTTAG
1 CGCACACTTAG
84509042 CGCCAATCTC
Statistics
Matches: 111, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
55 95 0.86
56 16 0.14
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:84511119 original size:34 final size:30
Alignment explanation
Indices: 84511080--84511143 Score: 83
Period size: 30 Copynumber: 2.0 Consensus size: 30
84511070 TCTCTGTTGG
*
84511080 CCGAATCTCCTTTCTCTTCTCCTCTTTTTTTTGA
1 CCGAATATCC-TTCTCTT-T-CT-TTTTTTTTGA
84511114 CCGAATATCCTTCTCTTTCTTTTTTTTTGA
1 CCGAATATCCTTCTCTTTCTTTTTTTTTGA
84511144 TTTCTACCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
30 10 0.34
31 2 0.07
32 1 0.03
33 7 0.24
34 9 0.31
ACGTcount: A:0.11, C:0.28, G:0.06, T:0.55
Consensus pattern (30 bp):
CCGAATATCCTTCTCTTTCTTTTTTTTTGA
Found at i:84512104 original size:53 final size:52
Alignment explanation
Indices: 84512012--84512149 Score: 159
Period size: 53 Copynumber: 2.6 Consensus size: 52
84512002 AGAGGTCAAT
* ** *
84512012 AAATAACCGAAATACCCTCATAGGTTAAAATGATTGAAATAACCCCATAGGGTA
1 AAAT-ACCGAAATACCC-CATAGGGTAAAATGAGAGAAATAACCCCATAAGGTA
* *
84512066 AAATGACCGACATACCCCATAGGGTAAAATGAGAGAAATACCCCCATAAGGTA
1 AAAT-ACCGAAATACCCCATAGGGTAAAATGAGAGAAATAACCCCATAAGGTA
**
84512119 AAATATTTGAAATACCACCATAGGGTAAAAT
1 AAATA-CCGAAATACC-CCATAGGGTAAAAT
84512150 AACCGAAATA
Statistics
Matches: 72, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
52 1 0.01
53 42 0.58
54 29 0.40
ACGTcount: A:0.45, C:0.19, G:0.16, T:0.20
Consensus pattern (52 bp):
AAATACCGAAATACCCCATAGGGTAAAATGAGAGAAATAACCCCATAAGGTA
Found at i:84512157 original size:27 final size:26
Alignment explanation
Indices: 84512012--84512162 Score: 149
Period size: 27 Copynumber: 5.7 Consensus size: 26
84512002 AGAGGTCAAT
*
84512012 AAATAACCGAAATACCCTCATAGGTTA
1 AAATAACCGAAATACCC-CATAGGGTA
* **
84512039 AAATGATTGAAATAACCCCATAGGGTA
1 AAATAACCGAAAT-ACCCCATAGGGTA
* *
84512066 AAATGACCGACATACCCCATAGGGTA
1 AAATAACCGAAATACCCCATAGGGTA
* ** *
84512092 AAATGAGAGAAATACCCCCATAAGGTA
1 AAATAACCGAAATA-CCCCATAGGGTA
***
84512119 AAATATTTGAAATACCACCATAGGGTA
1 AAATAACCGAAATACC-CCATAGGGTA
84512146 AAATAACCGAAATACCC
1 AAATAACCGAAATACCC
84512163 GTAGGAGATG
Statistics
Matches: 102, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
26 27 0.26
27 71 0.70
28 4 0.04
ACGTcount: A:0.45, C:0.21, G:0.15, T:0.19
Consensus pattern (26 bp):
AAATAACCGAAATACCCCATAGGGTA
Found at i:84512358 original size:26 final size:26
Alignment explanation
Indices: 84512315--84512377 Score: 99
Period size: 26 Copynumber: 2.4 Consensus size: 26
84512305 TGGAGGTAGT
* *
84512315 ATACTGTTACTGGTAGCTTTGCTGCG
1 ATACTGTTACTGGCAGCTTTACTGCG
*
84512341 ATACTGTTATTGGCAGCTTTACTGCG
1 ATACTGTTACTGGCAGCTTTACTGCG
84512367 ATACTGTTACT
1 ATACTGTTACT
84512378 TAAATATTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.19, C:0.19, G:0.22, T:0.40
Consensus pattern (26 bp):
ATACTGTTACTGGCAGCTTTACTGCG
Found at i:84512574 original size:28 final size:27
Alignment explanation
Indices: 84512532--84512589 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 27
84512522 GTACTGATAT
*
84512532 TGTACTGGGCAAAGGCCCACATTGTTAC
1 TGTACTGGGCAAAGGCCCACACTG-TAC
* * *
84512560 TGTATTGGGCTAAGGCCTACACTGTAC
1 TGTACTGGGCAAAGGCCCACACTGTAC
84512587 TGT
1 TGT
84512590 TACTAAATAG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
27 6 0.23
28 20 0.77
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.29
Consensus pattern (27 bp):
TGTACTGGGCAAAGGCCCACACTGTAC
Found at i:84518877 original size:35 final size:36
Alignment explanation
Indices: 84518812--84518882 Score: 92
Period size: 35 Copynumber: 2.0 Consensus size: 36
84518802 CTTTTTTCCC
* *
84518812 CTCTTCTCTTCTCTTTTGGCCGAATCTCCTTTCTCTT
1 CTCTTCTCTTCTCTTTTGACCGAATATCC-TTCTCTT
*
84518849 CTCTTCT-TTTTC-TTTGACCGAATATCCTTCTCTT
1 CTCTTCTCTTCTCTTTTGACCGAATATCCTTCTCTT
84518883 TCTGTTTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
34 7 0.23
35 13 0.42
36 4 0.13
37 7 0.23
ACGTcount: A:0.08, C:0.32, G:0.07, T:0.52
Consensus pattern (36 bp):
CTCTTCTCTTCTCTTTTGACCGAATATCCTTCTCTT
Found at i:84519851 original size:27 final size:27
Alignment explanation
Indices: 84519812--84519926 Score: 151
Period size: 27 Copynumber: 4.3 Consensus size: 27
84519802 AGAGGTCAAT
* *
84519812 AAATGACCGAAATTCCCCTATAGGGTA
1 AAATGACCAAAATACCCCTATAGGGTA
84519839 AAATGACCAAAATACCCCTATAGGGTA
1 AAATGACCAAAATACCCCTATAGGGTA
* **
84519866 AAATGACTAAAATACCCCTATAGAATA
1 AAATGACCAAAATACCCCTATAGGGTA
* *
84519893 AAATGACTAAAATACCACC-ATAAGGTA
1 AAATGACCAAAATACC-CCTATAGGGTA
84519920 AAATGAC
1 AAATGAC
84519927 TATTATACCC
Statistics
Matches: 79, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
27 77 0.97
28 2 0.03
ACGTcount: A:0.47, C:0.20, G:0.13, T:0.20
Consensus pattern (27 bp):
AAATGACCAAAATACCCCTATAGGGTA
Found at i:84519884 original size:54 final size:54
Alignment explanation
Indices: 84519812--84519939 Score: 159
Period size: 54 Copynumber: 2.4 Consensus size: 54
84519802 AGAGGTCAAT
** * ** *
84519812 AAATGACCGAAATTCCCCTATAGGGTAAAATGACCAAAATACC-CCTATAGGGTA
1 AAATGACTAAAATACCCCTATAGAATAAAATGACCAAAATACCACC-ATAAGGTA
*
84519866 AAATGACTAAAATACCCCTATAGAATAAAATGACTAAAATACCACCATAAGGTA
1 AAATGACTAAAATACCCCTATAGAATAAAATGACCAAAATACCACCATAAGGTA
**
84519920 AAATGACTATTATACCCCTA
1 AAATGACTAAAATACCCCTA
84519940 GGAGATGAAA
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 62 0.97
55 2 0.03
ACGTcount: A:0.45, C:0.21, G:0.12, T:0.22
Consensus pattern (54 bp):
AAATGACTAAAATACCCCTATAGAATAAAATGACCAAAATACCACCATAAGGTA
Found at i:84522409 original size:26 final size:26
Alignment explanation
Indices: 84522380--84522482 Score: 84
Period size: 26 Copynumber: 4.0 Consensus size: 26
84522370 GGGTTTGGGG
*
84522380 TGTTATAAGCAGCTTTGCTATGATAC
1 TGTTATAAGCAGCTTTGCTACGATAC
** *
84522406 TGTTATTGGCAGCTTTGCTGCGATAC
1 TGTTATAAGCAGCTTTGCTACGATAC
* * *
84522432 TGTTAT-TGACAGCTTTACTGCGATAC
1 TGTTATAAG-CAGCTTTGCTACGATAC
* * *
84522458 TATTACT-GGCAGCTTTGCTGCGATA
1 TGTTA-TAAGCAGCTTTGCTACGATA
84522483 TTAGTGAGTT
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
25 1 0.02
26 63 0.95
27 2 0.03
ACGTcount: A:0.21, C:0.18, G:0.22, T:0.38
Consensus pattern (26 bp):
TGTTATAAGCAGCTTTGCTACGATAC
Found at i:84522829 original size:31 final size:31
Alignment explanation
Indices: 84522794--84522855 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
84522784 TGGTGCTGTG
* *
84522794 AGGGACTTGGAGGTGGCCACACAACTGTAGC
1 AGGGACTCGGAGATGGCCACACAACTGTAGC
84522825 AGGGACTCGGAGATGGCCACACAACTGTAGC
1 AGGGACTCGGAGATGGCCACACAACTGTAGC
84522856 TATTTTACAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.24, G:0.34, T:0.15
Consensus pattern (31 bp):
AGGGACTCGGAGATGGCCACACAACTGTAGC
Found at i:84528234 original size:9 final size:9
Alignment explanation
Indices: 84528217--84528253 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
84528207 TGAGTTTTCG
84528217 AATTCGAAT
1 AATTCGAAT
*
84528226 AACTCGAAT
1 AATTCGAAT
84528235 AATTCGAAT
1 AATTCGAAT
84528244 AATTCGAAT
1 AATTCGAAT
84528253 A
1 A
84528254 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:84529915 original size:28 final size:28
Alignment explanation
Indices: 84529880--84530012 Score: 169
Period size: 28 Copynumber: 4.8 Consensus size: 28
84529870 ATAAGGTGTC
**
84529880 CACCACAAAGGCTTATTCTTTTGTAGTT
1 CACCACAAAGGCTTATTCTTTCATAGTT
*
84529908 -AGGCACAAAGGCTTATTCTTTCATAGTT
1 CA-CCACAAAGGCTTATTCTTTCATAGTT
* * * **
84529936 CATCACAAAGGTTTAATCAGTCATAGTT
1 CACCACAAAGGCTTATTCTTTCATAGTT
*
84529964 CTCCACAAAGGCTTATTCTTTCATAGTT
1 CACCACAAAGGCTTATTCTTTCATAGTT
84529992 CACCACAAAGGCTTATTCTTT
1 CACCACAAAGGCTTATTCTTT
84530013 TCTGACATGT
Statistics
Matches: 88, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
27 1 0.01
28 86 0.98
29 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.36
Consensus pattern (28 bp):
CACCACAAAGGCTTATTCTTTCATAGTT
Found at i:84536529 original size:35 final size:35
Alignment explanation
Indices: 84536473--84536677 Score: 119
Period size: 35 Copynumber: 5.6 Consensus size: 35
84536463 TTTGCCGGTT
* * *
84536473 TATCCGACTAGTGCTGAGCTCAAATATTGTTGGTA
1 TATCCAACTAGAGCTGGGCTCAAATATTGTTGGTA
* * * *
84536508 AATCCAACTAGAGCTGGGCTCACTATATATTCTTTAGTT
1 TATCCAACTAGAGCTGGGCTCA--A-ATATT-GTTGGTA
** * *
84536547 TATCCGGCTAGCA-CTGGGCGCAAATATCGTTGGTA
1 TATCCAACTAG-AGCTGGGCTCAAATATTGTTGGTA
* * * *
84536582 TATCCAACTAGAGTTGGGCTCACAATTTATTCTTCAGTT
1 TATCCAACTAGAGCTGGGCTCA-AA--TATTGTT-GGTA
* * * *
84536621 TAT-CAGACTAGCGCTCGGCGCAAATATCGTTGGTA
1 TATCCA-ACTAGAGCTGGGCTCAAATATTGTTGGTA
84536656 TATCCAACTAGAG-TGGGGCTCA
1 TATCCAACTAGAGCT-GGGCTCA
84536678 CTAATTATTC
Statistics
Matches: 123, Mismatches: 34, Indels: 26
0.67 0.19 0.14
Matches are distributed among these distances:
34 2 0.02
35 54 0.44
36 13 0.11
37 2 0.02
38 14 0.11
39 37 0.30
40 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (35 bp):
TATCCAACTAGAGCTGGGCTCAAATATTGTTGGTA
Found at i:84536579 original size:74 final size:73
Alignment explanation
Indices: 84536470--84536717 Score: 300
Period size: 74 Copynumber: 3.4 Consensus size: 73
84536460 TTATTTGCCG
* * * * *
84536470 GTTTATCCGACTAGTGCTGAGCTCAAATATTGTTGGTAAATCCAACTAGAGCTGGGCTCACTATA
1 GTTTATCCGACTAGCGCTGGGCGCAAATATCGTTGGTATATCCAACTAGAG-TGGGCTCACTATA
*
84536535 TATTCTTTA
65 TATTCTTCA
* * * *
84536544 GTTTATCCGGCTAGCACTGGGCGCAAATATCGTTGGTATATCCAACTAGAGTTGGGCTCACAATT
1 GTTTATCCGACTAGCGCTGGGCGCAAATATCGTTGGTATATCCAACTAGAG-TGGGCTCACTATA
84536609 TATTCTTCA
65 TATTCTTCA
* *
84536618 GTTTATCAGACTAGCGCTCGGCGCAAATATCGTTGGTATATCCAACTAGAGTGGGGCTCACTA-A
1 GTTTATCCGACTAGCGCTGGGCGCAAATATCGTTGGTATATCCAACTAGAGT-GGGCTCACTATA
* *
84536682 TTATTCGTCG
65 -TATTCTTCA
** *
84536692 GTTTATCTTACTAGTGCTGGGCGCAA
1 GTTTATCCGACTAGCGCTGGGCGCAA
84536718 CTTCCGTCAG
Statistics
Matches: 149, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
73 1 0.01
74 148 0.99
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.33
Consensus pattern (73 bp):
GTTTATCCGACTAGCGCTGGGCGCAAATATCGTTGGTATATCCAACTAGAGTGGGCTCACTATAT
ATTCTTCA
Found at i:84550364 original size:22 final size:22
Alignment explanation
Indices: 84550339--84550382 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
84550329 ACCACAAGTT
84550339 CTTTATTAAAAATGCAAATAAG
1 CTTTATTAAAAATGCAAATAAG
* *
84550361 CTTTATTTAAAATGTAAATAAG
1 CTTTATTAAAAATGCAAATAAG
84550383 AAAGACTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.48, C:0.07, G:0.09, T:0.36
Consensus pattern (22 bp):
CTTTATTAAAAATGCAAATAAG
Found at i:84560106 original size:19 final size:19
Alignment explanation
Indices: 84560062--84560106 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
84560052 GCGAAAACAC
* *
84560062 AAAAGAAAAGAAAAATGAGA
1 AAAAG-AAAGAAAAATCAAA
*
84560082 AGAAGAAAGAAAAATCAAA
1 AAAAGAAAGAAAAATCAAA
84560101 AAAAGA
1 AAAAGA
84560107 GAGCGAAACA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.76, C:0.02, G:0.18, T:0.04
Consensus pattern (19 bp):
AAAAGAAAGAAAAATCAAA
Found at i:84561988 original size:44 final size:44
Alignment explanation
Indices: 84561922--84562155 Score: 152
Period size: 44 Copynumber: 5.1 Consensus size: 44
84561912 GATCGCATCG
* *
84561922 GATTGAAGCCAGAAATCTTATCTCCCTTAGATTACAGCGGAGCA
1 GATTGAAGCCAGAAATCCTATCTCCCTGAGATTACAGCGGAGCA
* * * *
84561966 GATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCG
1 GATTGAAGCCAGAAATCCTATCTCCCTGAGATTACAGCGGAGCA
** * * *
84562010 GATT-AAAACA-AAGGATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATCA
1 GATTGAAGCCAGAA--ATCCTATCTCCCTGAGA-TTAC---AGCG--GA--G---CA
* **
84562064 GATTGAAGCCAAAAATATTATCTCCCTGAGATTACAGCGGAGCA
1 GATTGAAGCCAGAAATCCTATCTCCCTGAGATTACAGCGGAGCA
* * * *
84562108 AATTGAAGCTA-ATAATCCTATCTCCCTGAGATTACAGTGGAGCG
1 GATTGAAGCCAGA-AATCCTATCTCCCTGAGATTACAGCGGAGCA
84562152 GATT
1 GATT
84562156 AAAACAAAGG
Statistics
Matches: 147, Mismatches: 26, Indels: 34
0.71 0.13 0.16
Matches are distributed among these distances:
42 1 0.01
43 5 0.03
44 100 0.68
47 4 0.03
49 4 0.03
51 4 0.03
54 22 0.15
55 5 0.03
56 2 0.01
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (44 bp):
GATTGAAGCCAGAAATCCTATCTCCCTGAGATTACAGCGGAGCA
Found at i:84562058 original size:142 final size:142
Alignment explanation
Indices: 84561842--84562214 Score: 656
Period size: 142 Copynumber: 2.6 Consensus size: 142
84561832 TTACAAGTCT
* * * *
84561842 TATCTCCCTGAGATTACAGTGGAGCGAATTAAAATAAAAGATCTTTTCTCTCTGAAGTTACAGTA
1 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACAAAGGATCTTATCTCTCTGAAGTTACAGTA
* * * * *
84561907 GAGTAGATCGCATCGGATTGAAGCCAGAAATCTTATCTCCCTTAGATTACAGCGGAGCAGATTGA
66 GAGTAGATCGCATCAGATTGAAGCCAAAAATATTATCTCCCTGAGATTACAGCGGAGCAAATTGA
*
84561972 AGCTAGTAATCC
131 AGCTAATAATCC
84561984 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACAAAGGATCTTATCTCTCTGAAGTTACAGTA
1 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACAAAGGATCTTATCTCTCTGAAGTTACAGTA
84562049 GAGTAGATCGCATCAGATTGAAGCCAAAAATATTATCTCCCTGAGATTACAGCGGAGCAAATTGA
66 GAGTAGATCGCATCAGATTGAAGCCAAAAATATTATCTCCCTGAGATTACAGCGGAGCAAATTGA
84562114 AGCTAATAATCC
131 AGCTAATAATCC
84562126 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACAAAGGATCTTATCTCTCTGAAGTTACAGTA
1 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACAAAGGATCTTATCTCTCTGAAGTTACAGTA
84562191 GAGTAGATCGCATCAGATTGAAGC
66 GAGTAGATCGCATCAGATTGAAGC
84562215 TACAACAGCA
Statistics
Matches: 221, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
142 221 1.00
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.27
Consensus pattern (142 bp):
TATCTCCCTGAGATTACAGTGGAGCGGATTAAAACAAAGGATCTTATCTCTCTGAAGTTACAGTA
GAGTAGATCGCATCAGATTGAAGCCAAAAATATTATCTCCCTGAGATTACAGCGGAGCAAATTGA
AGCTAATAATCC
Found at i:84562174 original size:44 final size:44
Alignment explanation
Indices: 84562073--84562189 Score: 112
Period size: 44 Copynumber: 2.7 Consensus size: 44
84562063 AGATTGAAGC
* * * *
84562073 CAAA-AATATTATCTCCCTGAGATTACAGCGGAGCAAATTGAAG
1 CAAAGAATCTTATCTCCCTGAGATTACAGTGGAGCAAATTAAAA
* * * **
84562116 CTAATAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAA
1 CAAAGAATCTTATCTCCCTGAGATTACAGTGGAGCAAATTAAAA
* *
84562160 CAAAGGATCTTATCTCTCTGA-AGTTACAGT
1 CAAAGAATCTTATCTCCCTGAGA-TTACAGT
84562190 AGAGTAGATC
Statistics
Matches: 59, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
43 4 0.07
44 55 0.93
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (44 bp):
CAAAGAATCTTATCTCCCTGAGATTACAGTGGAGCAAATTAAAA
Found at i:84580129 original size:20 final size:21
Alignment explanation
Indices: 84580092--84580134 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
84580082 TTCATAATTT
84580092 TAAAATTTTTAAAAATAA-AA
1 TAAAATTTTTAAAAATAATAA
*
84580112 TAAAATTTATT-AATATAATAA
1 TAAAATTT-TTAAAAATAATAA
84580133 TA
1 TA
84580135 TTAGGTTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
TAAAATTTTTAAAAATAATAA
Found at i:84580231 original size:20 final size:20
Alignment explanation
Indices: 84580194--84580254 Score: 52
Period size: 20 Copynumber: 3.0 Consensus size: 20
84580184 CTCTTTTTCA
* * *
84580194 AAAAAGAAATTTACTTTTTTT
1 AAAAATAAA-TTAATTTTTTG
*
84580215 AAAAATAAATTAATTTTCATG
1 AAAAATAAATTAATTTT-TTG
*
84580236 AAAAAT-AATTTATTTTTTG
1 AAAAATAAATTAATTTTTTG
84580255 TTGACAAACT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
19 2 0.06
20 16 0.48
21 15 0.45
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (20 bp):
AAAAATAAATTAATTTTTTG
Found at i:84580537 original size:20 final size:20
Alignment explanation
Indices: 84580511--84580563 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
84580501 ATGTGCTAAT
84580511 AATTTTTGGTACTCCCTC-A
1 AATTTTTGGTACTCCCTCTA
* *
84580530 AATATTTTGGTATTCCTTCTA
1 AAT-TTTTGGTACTCCCTCTA
*
84580551 AATTTTTTGTACT
1 AATTTTTGGTACT
84580564 TTTTTATAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
19 3 0.11
20 21 0.75
21 4 0.14
ACGTcount: A:0.23, C:0.17, G:0.09, T:0.51
Consensus pattern (20 bp):
AATTTTTGGTACTCCCTCTA
Found at i:84581052 original size:78 final size:73
Alignment explanation
Indices: 84580937--84581156 Score: 201
Period size: 78 Copynumber: 2.9 Consensus size: 73
84580927 TCTTTCATAA
* * *
84580937 TTTTTAGTATTTCCTCAAGTCTTATGATATTCTCTCATAATTTTTTATACTTCCTCATATTTTTA
1 TTTTTA-TACTTCCTCAAGTTTTATGGTATTCTCTCATAATTTTTTATACTTCCTCATATTTTTA
84581002 CATCCTCATAT
65 CATCCTC--AT
* * * * * ** *
84581013 TTTTTGGTACTTTCTCATATTTTTTTCGGTATTCCCTCATAA-TTTTGGTACATT-CTTATAAAT
1 TTTTT-ATACTTCCTCA-AGTTTTAT-GGTATTCTCTCATAATTTTTTATAC-TTCCTCAT--AT
84581076 TTTGGTACATCCTCAT
60 TTT--TACATCCTCAT
*
84581092 TTTTTATACTTCCTCAGGTTTTATGGTATTCTCTCATAATTTTTTTATACTTCCTCATATATTTT
1 TTTTTATACTTCCTCAAGTTTTATGGTATTCTCTCATAA-TTTTTTATACTTCCTCATAT-TTTT
84581157 TAGTATTCTC
Statistics
Matches: 112, Mismatches: 20, Indels: 25
0.71 0.13 0.16
Matches are distributed among these distances:
75 1 0.01
76 29 0.26
77 26 0.23
78 35 0.31
79 12 0.11
81 9 0.08
ACGTcount: A:0.21, C:0.18, G:0.07, T:0.54
Consensus pattern (73 bp):
TTTTTATACTTCCTCAAGTTTTATGGTATTCTCTCATAATTTTTTATACTTCCTCATATTTTTAC
ATCCTCAT
Found at i:84581141 original size:41 final size:41
Alignment explanation
Indices: 84581090--84581182 Score: 134
Period size: 41 Copynumber: 2.3 Consensus size: 41
84581080 GTACATCCTC
* *
84581090 ATTTTTTATACTTCCTCAGGT-TTTATGGTATTCTCTCATA
1 ATTTTTTATACTTCCTCAGATATTTATAGTATTCTCTCATA
* *
84581130 ATTTTTTTATACTTCCTCATATATTTTTAGTATTCTCTCATA
1 A-TTTTTTATACTTCCTCAGATATTTATAGTATTCTCTCATA
84581172 ATTTTTTATAC
1 ATTTTTTATAC
84581183 ATCTTCAAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
40 1 0.02
41 28 0.60
42 18 0.38
ACGTcount: A:0.23, C:0.16, G:0.05, T:0.56
Consensus pattern (41 bp):
ATTTTTTATACTTCCTCAGATATTTATAGTATTCTCTCATA
Found at i:84581175 original size:98 final size:96
Alignment explanation
Indices: 84580963--84581185 Score: 206
Period size: 98 Copynumber: 2.3 Consensus size: 96
84580953 AAGTCTTATG
* * * *
84580963 ATATTCTCTCATAATTTTTTATACTTCCTCATATTTTTACATCCTCATATTTTTTGGTACTTTCT
1 ATATTCTCTCATAA-TTTTGATACATCCTCATATTTTTACATCCTCAGATTTTATGGTACTTTCT
*
84581028 CATATTTTTTTCGGTATTCCCTCATAATTTTGGT
65 CATATTTTTTTC-ATATTCCCTCATAATTTT-GT
* * * * *
84581062 ACATTCT-T-ATAAATTTTGGTACATCCTCATTTTTTATACTTCCTCAGGTTTTATGGTA-TTCT
1 ATATTCTCTCAT-AATTTTGATACATCCTCATATTTT-TACATCCTCAGATTTTATGGTACTT-T
84581124 CTCATAATTTTTTT-ATACTT-CCTCATATATTTT-T
63 CTCAT-ATTTTTTTCATA-TTCCCTCATA-ATTTTGT
*
84581158 AGTATTCTCTCATAATTTTTTATACATC
1 A-TATTCTCTCATAA-TTTTGATACATC
84581186 TTCAAAATTT
Statistics
Matches: 101, Mismatches: 13, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
96 2 0.02
97 36 0.36
98 37 0.37
99 26 0.26
ACGTcount: A:0.22, C:0.18, G:0.06, T:0.53
Consensus pattern (96 bp):
ATATTCTCTCATAATTTTGATACATCCTCATATTTTTACATCCTCAGATTTTATGGTACTTTCTC
ATATTTTTTTCATATTCCCTCATAATTTTGT
Found at i:84581178 original size:21 final size:21
Alignment explanation
Indices: 84581117--84581179 Score: 78
Period size: 21 Copynumber: 3.0 Consensus size: 21
84581107 AGGTTTTATG
84581117 GTATTCTCTCATAATTTTTTTA
1 GTATTCTCTCATAA-TTTTTTA
84581139 -TACTTC-CTCAT-ATATTTTTA
1 GTA-TTCTCTCATAAT-TTTTTA
84581159 GTATTCTCTCATAATTTTTTA
1 GTATTCTCTCATAATTTTTTA
84581180 TACATCTTCA
Statistics
Matches: 36, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
19 1 0.03
20 10 0.28
21 20 0.56
22 5 0.14
ACGTcount: A:0.24, C:0.16, G:0.03, T:0.57
Consensus pattern (21 bp):
GTATTCTCTCATAATTTTTTA
Found at i:84581317 original size:36 final size:39
Alignment explanation
Indices: 84581277--84581355 Score: 101
Period size: 39 Copynumber: 2.1 Consensus size: 39
84581267 TTTGGCATTC
*
84581277 CCTCATAA-TTTTT-TATACATC-TAAGTTTTGATACTT
1 CCTCATAACTTTTTGTATACATCATAAGTTTTGATAATT
* * *
84581313 CCTCATAACTTTTTGTATTCATCATAATTTTTGGTAATT
1 CCTCATAACTTTTTGTATACATCATAAGTTTTGATAATT
84581352 CCTC
1 CCTC
84581356 GTATTTTATG
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
36 8 0.22
37 5 0.14
38 7 0.19
39 16 0.44
ACGTcount: A:0.25, C:0.19, G:0.06, T:0.49
Consensus pattern (39 bp):
CCTCATAACTTTTTGTATACATCATAAGTTTTGATAATT
Found at i:84581414 original size:20 final size:20
Alignment explanation
Indices: 84580931--84581414 Score: 163
Period size: 20 Copynumber: 25.1 Consensus size: 20
84580921 TGGTGTTCTT
* *
84580931 TCATAATTTTTAGTATTTCC
1 TCATAATTTTTGGTACTTCC
* * *
84580951 TCA-AGTCTTATGATA-TTCTC
1 TCATAAT-TTTTGGTACTTC-C
**
84580971 TCATAATTTTTTATACTTCC
1 TCATAATTTTTGGTACTTCC
*
84580991 TCAT-A-TTTT--TACATCC
1 TCATAATTTTTGGTACTTCC
* *
84581007 TCATATTTTTTGGTACTTTC
1 TCATAATTTTTGGTACTTCC
*
84581027 TCATATTTTTTTCGGTA-TTCCC
1 TCATA-ATTTTT-GGTACTT-CC
84581049 TCATAA-TTTTGGTACATT-C
1 TCATAATTTTTGGTAC-TTCC
* * *
84581068 TTATAAATTTTGGTACATCC
1 TCATAATTTTTGGTACTTCC
*
84581088 TCAT--TTTTT-ATACTTCC
1 TCATAATTTTTGGTACTTCC
**
84581105 TCA-GGTTTTATGGTA-TTCTC
1 TCATAATTTT-TGGTACTTC-C
**
84581125 TCATAATTTTTTTATACTTCC
1 TCATAA-TTTTTGGTACTTCC
*
84581146 TCATATATTTTTAGTA-TTCTC
1 TCATA-ATTTTTGGTACTTC-C
** * *
84581167 TCATAATTTTTTATACATCT
1 TCATAATTTTTGGTACTTCC
* * *
84581187 TCAAAATTTTTGGTGCATCC
1 TCATAATTTTTGGTACTTCC
* *
84581207 TCATATTTTTTTGGTA-TCCC
1 TCATA-ATTTTTGGTACTTCC
* *
84581227 TCGTAATGTTTTTGTA-TTCGC
1 TCATAAT-TTTTGGTACTTC-C
84581248 TCAT-ATTTTTGGTA----C
1 TCATAATTTTTGGTACTTCC
*
84581263 T--T--TTTTTGGCA-TTCCC
1 TCATAATTTTTGGTACTT-CC
* *
84581279 TCATAATTTTT--TA-TACA
1 TCATAATTTTTGGTACTTCC
* *
84581296 TC-TAAGTTTTGATACTTCC
1 TCATAATTTTTGGTACTTCC
*
84581315 TCATAACTTTTT-GTA-TTCA
1 TCATAA-TTTTTGGTACTTCC
*
84581334 TCATAATTTTTGGTAATTCC
1 TCATAATTTTTGGTACTTCC
* *
84581354 TCGT-ATTTTATGGTACTTTC
1 TCATAATTTT-TGGTACTTCC
* ** * *
84581374 TCATATTTTTTTATGCATCC
1 TCATAATTTTTGGTACTTCC
*
84581394 TCATAAGTTTTGGTACTTCC
1 TCATAATTTTTGGTACTTCC
84581414 T
1 T
84581415 TATACTTCTT
Statistics
Matches: 345, Mismatches: 73, Indels: 92
0.68 0.14 0.18
Matches are distributed among these distances:
12 8 0.02
13 1 0.00
15 2 0.01
16 19 0.06
17 12 0.03
18 26 0.08
19 50 0.14
20 150 0.43
21 59 0.17
22 18 0.05
ACGTcount: A:0.21, C:0.18, G:0.08, T:0.52
Consensus pattern (20 bp):
TCATAATTTTTGGTACTTCC
Found at i:84581436 original size:31 final size:31
Alignment explanation
Indices: 84581401--84581463 Score: 92
Period size: 31 Copynumber: 2.0 Consensus size: 31
84581391 TCCTCATAAG
*
84581401 TTTTGGTACTTCCTTATACTTCTTTG-TATTT
1 TTTTGGTACTTCCTTATAATTC-TTGATATTT
*
84581432 TTTTGGTACTTTCTTATAATTCTTGATATTT
1 TTTTGGTACTTCCTTATAATTCTTGATATTT
84581463 T
1 T
84581464 ATCATATTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 3 0.10
31 26 0.90
ACGTcount: A:0.16, C:0.13, G:0.10, T:0.62
Consensus pattern (31 bp):
TTTTGGTACTTCCTTATAATTCTTGATATTT
Found at i:84581684 original size:16 final size:16
Alignment explanation
Indices: 84581643--84581684 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 16
84581633 GTTATATTTC
84581643 ATGAAAAATTAAAAGA
1 ATGAAAAATTAAAAGA
84581659 ATGCGAAAAATTAAATA-A
1 AT--GAAAAATTAAA-AGA
84581677 ATGAAAAA
1 ATGAAAAA
84581685 AAAATTGAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
16 8 0.35
18 14 0.61
19 1 0.04
ACGTcount: A:0.67, C:0.02, G:0.12, T:0.19
Consensus pattern (16 bp):
ATGAAAAATTAAAAGA
Found at i:84583639 original size:247 final size:246
Alignment explanation
Indices: 84583192--84583924 Score: 1126
Period size: 247 Copynumber: 3.0 Consensus size: 246
84583182 GATGTTTAAT
* * ** * * * *
84583192 ATTGAAGTGATGGATGCATGTTAAAGTGGTATGTGATTGAGTATGTGAAATGCCCTGTTTTGCTA
1 ATTGAAGTTATGGATGCATGTTGAAGTGGTATGTGATTGAGTATACGGAATGCCCTATTCTGCTT
* * ** * *
84583257 GAAATTTTCAGAATTATACAGAGGTATTGATAATCGGGGCATATGCATCGATACTTCTAAGTTGA
66 GAATTTTTCAGAATTATACAGAGGTATTGATAATCAGGGCATATATATCTATACTTCTGAGTTGA
* * * * * * * * * * *
84583322 AACGAATGTGCAAGAAACAATCGATCATTTTGGTATTGATACCAGTTCTCGAGTA-CTGATACTT
131 AACAAATGTCCAGGAAATAGTTGCTAATTTTGGTATCGATACCAGTTCCCGAGTATC-GATACTC
84583386 GGGGTAAAAATATAGATACTTTTGAATTGTATCGATAAATTACTGGGTTTTG
195 GGGGTAAAAATATAGATACTTTTGAATTGTATCGATAAATTACTGGGTTTTG
84583438 ATTGAAGTTATGGATGCATGTTGAAGTGGTATGTGATTGAGTATACGGAATGCCCTATTCTGCTT
1 ATTGAAGTTATGGATGCATGTTGAAGTGGTATGTGATTGAGTATACGGAATGCCCTATTCTGCTT
*
84583503 GAATTTTTGCAGAATTATACAGAGGTATTGATAACCAGGGCATATATATCTATACTTCTGAGTTG
66 GAATTTTT-CAGAATTATACAGAGGTATTGATAATCAGGGCATATATATCTATACTTCTGAGTTG
* *
84583568 AAACAAATGTCCAGGAAATAGTTTCTTATTTTGGTATCGATACCAGTTCCCGAGTATCGATACTC
130 AAACAAATGTCCAGGAAATAGTTGCTAATTTTGGTATCGATACCAGTTCCCGAGTATCGATACTC
84583633 GGGGTAAAAATATAGATACTTTTGAATTGTATCGATAAATTACTGGGTTTTG
195 GGGGTAAAAATATAGATACTTTTGAATTGTATCGATAAATTACTGGGTTTTG
* *
84583685 ATTGAAGTTATGGATGCATGTTGAAGTGGTAAGTGATTAAGTATACGGAATGCCCTATTCTGCTT
1 ATTGAAGTTATGGATGCATGTTGAAGTGGTATGTGATTGAGTATACGGAATGCCCTATTCTGCTT
* *
84583750 GAATTTTTACAAAATTATACAGAGGTATTGATAATCAGTGCATATATATCTATACTTCTGAGTTG
66 GAATTTTT-CAGAATTATACAGAGGTATTGATAATCAGGGCATATATATCTATACTTCTGAGTTG
*
84583815 AAACAAATGTCCAGGAAATAGTTGCTAATTTTGGTATCGATACCAATTCCCGAGTATCGATACTC
130 AAACAAATGTCCAGGAAATAGTTGCTAATTTTGGTATCGATACCAGTTCCCGAGTATCGATACTC
*
84583880 GGGGTAAAAATATAGATACTTTTGAATTGTATTGATAAATTACTG
195 GGGGTAAAAATATAGATACTTTTGAATTGTATCGATAAATTACTG
84583925 AATTTTGGAT
Statistics
Matches: 448, Mismatches: 37, Indels: 3
0.92 0.08 0.01
Matches are distributed among these distances:
246 64 0.14
247 383 0.85
248 1 0.00
ACGTcount: A:0.32, C:0.12, G:0.22, T:0.35
Consensus pattern (246 bp):
ATTGAAGTTATGGATGCATGTTGAAGTGGTATGTGATTGAGTATACGGAATGCCCTATTCTGCTT
GAATTTTTCAGAATTATACAGAGGTATTGATAATCAGGGCATATATATCTATACTTCTGAGTTGA
AACAAATGTCCAGGAAATAGTTGCTAATTTTGGTATCGATACCAGTTCCCGAGTATCGATACTCG
GGGTAAAAATATAGATACTTTTGAATTGTATCGATAAATTACTGGGTTTTG
Found at i:84585275 original size:712 final size:710
Alignment explanation
Indices: 84583685--84591019 Score: 7689
Period size: 712 Copynumber: 10.5 Consensus size: 710
84583675 CTGGGTTTTG
* * ** * *
84583685 ATTGAAGTTATGGATGCATGTTGAAGTGGTAAGTGATTAAGTATACGGAATGCCCTATTCTGCTT
1 ATTGAAGTTATGGATGCATGTTGAAGTGGTATGTGATTGAGTATGTGGAATGCCCTATTTTGCTA
* * * * * *
84583750 GAATTTTTACAAAATTATACAGAGGTATTGATAATCAGTGCATATATATCTATACTTCTGAGTTG
66 GAATTTTTGCAGAATTATACAGAGGTATCGATAATCAGGGCATATGTATCGATACTTCTGAGTTG
* * * * * *
84583815 AAACAAATGTCCAGGAAATAGTTGCTAATTTTGGTATCGATACCAATTCCCGAGTATCGATACTC
131 AAAC-AATGTGCAGGAAACAGTTGCTCATTTTGGTATCGATACCAGTTCTCGAGTATTGATACTC
* **
84583880 GGGGTAAAAATATAGATACTTTTGAATTGTATTGATAAATT-ACTGAATTTTGGATTTTGAAGAA
195 GGGGTAAAAATATAGATACTTTTGAATTGTATCGATAAATTGA-TGGGTTTT-GATTTTGAAGAA
* * * * *
84583944 GATCAGAATGTTAAAAAGGTTTCGATTTTCCAAACAGTATCGGTACCTATTTAT-AGAAATATCG
258 AAT-AGAATGTTAAAAAGGTATCGATTTTCCAAACGGTATCGATACCCATTT-TGAGAAATATCG
* * *
84584008 ATTCTCATTTAGATGTTCTCATTTAATGTATGATATCATGTTTGTTGGTAGTTTTCTCCCGATCA
321 ATTCCCATTTAGATGTTCTCATTTAATGTATGATATCATGTTTATTGGTAGTTTTTTCCCGATCA
* * * *
84584073 TTCCCTAAGTTTGTTTAAGCTCACACACTCTTTTTTTAACCTTTGCAGATAGTTAGTGTTTCCGG
386 TTCACTAAGCTTGTTTAAGCTCACACACTCTTTTCTGAACCTTTGCAGATAGTTAGTGTTTCCGG
* *
84584138 TGTGGGCAGTGCGGAATTCTAAGGAAGTGATCCAAGTTAGGCTTAGTGTTTGAGTAGGTGATATT
451 TGTGGGCGGTGCGGAATTCCAAGGAAGTGATCCAAGTTAGGCTTAGTGTTTGAGTAGGTGATATT
*
84584203 ATTGCTATTAGTTTTT-AACTGTGGGAATAAGACAATGTGGTAGAATTGTTGGTTGATTATTCTC
516 ATTGCTATTA-TTTTTGAACTGT-GGAATAAGACAATGTGGTAGAATTGTTGGTTGATTATTATC
* *
84584267 ATGATTTTTTAAATGATTATTTTGATTTTAATACTCTTAGGTTCGTGGACGTTGCTATTAGTTTA
579 ATGATGTTTTAAATGATTATTTTGATTTTAATACTCTTAGGTTCGTGGACGTTGTTATTAGTTTA
* *
84584332 TTGGCTTT-CTTGGTTGAAATTATTTATATTGCTATAGACTGCAAATATGGACATTTTGATGTTT
644 TTGG-TTTGCTTGGTTGAAATTATTTATATTGCTATGGACTGCAAATATGGACATTTTGATGTTG
84584396 AAT
708 AAT
* * * * *
84584399 ATTGAAATGATGGATGCATGTTAAAGTGGAATGTGATTGAGTATGTGGAATGCCCTGTTTTGCTA
1 ATTGAAGTTATGGATGCATGTTGAAGTGGTATGTGATTGAGTATGTGGAATGCCCTATTTTGCTA
* * *
84584464 GAATTTTTGCGGAATTATACAGAGGTATTGATAATC-GAGGCATATGCATCGATACTTCTGAGTT
66 GAATTTTTGCAGAATTATACAGAGGTATCGATAATCAG-GGCATATGTATCGATACTTCTGAGTT
* * *
84584528 GAAACGAATGTGCAGGAAACAATCGCTCATTTTGGTATTGATACCAGTTCTCGAGTATTGATACT
130 GAAAC-AATGTGCAGGAAACAGTTGCTCATTTTGGTATCGATACCAGTTCTCGAGTATTGATACT
*
84584593 CGAGGTAAAAATATAGATACTTTTGAATTGTATCGATAAATTGATGGGTTTTAGATTTTGAAGAA
194 CGGGGTAAAAATATAGATACTTTTGAATTGTATCGATAAATTGATGGGTTTT-GATTTTGAAGAA
* * * **
84584658 AACTAGAATGTTAAAAAGGTTTTGGTTTTCCAAATAGTATCGATACCCATTTTGAGAAATATCGA
258 AA-TAGAATGTTAAAAAGGTATCGATTTTCCAAACGGTATCGATACCCATTTTGAGAAATATCGA
* * * * ** *
84584723 TTCCCATTTACATGTTCTTATTTAAAGTATGTTATCATGTTTATCAGTAGTTTTTTTCCGATCAT
322 TTCCCATTTAGATGTTCTCATTTAATGTATGATATCATGTTTATTGGTAGTTTTTTCCCGATCAT
* * *
84584788 TCACTAAGCTTGTTTAACCTCACACACTCTTTTCTGAACCTTTGCAGATAATTAGTGTTTCCGAT
387 TCACTAAGCTTGTTTAAGCTCACACACTCTTTTCTGAACCTTTGCAGATAGTTAGTGTTTCCGGT
* *** ** * *
84584853 TTGGGAAATGCAAAATTCCAAAGAAGTGATCCAAGTTAGGCTTAGTGTTTGAGTATGTGATATTA
452 GTGGGCGGTGCGGAATTCCAAGGAAGTGATCCAAGTTAGGCTTAGTGTTTGAGTAGGTGATATTA
*
84584918 TT-CTATTATTTTT-AACTGTAGGAATAAAACAATGTGGTAGAATTGTTGGTTGATTATTATCAT
517 TTGCTATTATTTTTGAACTGT-GGAATAAGACAATGTGGTAGAATTGTTGGTTGATTATTATCAT
* * *
84584981 GATGTTTTAAATGATTATTTTGATTTTAACACTCTTAGGTTCCTGGATGTTGTTATTAGTTTATT
581 GATGTTTTAAATGATTATTTTGATTTTAATACTCTTAGGTTCGTGGACGTTGTTATTAGTTTATT
* * *
84585046 GGTTTGCTTGGTTGAAATTATTCATATTGCTATGGATTTCAAATATGGACATTTTGATGTTGAAT
646 GGTTTGCTTGGTTGAAATTATTTATATTGCTATGGACTGCAAATATGGACATTTTGATGTTGAAT
84585111 ATTGAAGTTACT-GATGCATGTTGAAGTGGTATGTGATTGAGTATGTGGAATGCCCTATTTTGCT
1 ATTGAAGTTA-TGGATGCATGTTGAAGTGGTATGTGATTGAGTATGTGGAATGCCCTATTTTGCT
* * * *
84585175 GGAATTTTTGCAAAATTATACAGAGGTATCGATAATCAGAGCATACGTATCGATACTTCTGAGTT
65 AGAATTTTTGCAGAATTATACAGAGGTATCGATAATCAGGGCATATGTATCGATACTTCTGAGTT
* * * * *
84585240 GAAACAATTGTGCAAGAAACAGTAGCACTTTTTGGTATCGATACCAATTCTCGAGTATTGATACT
130 GAAACAA-TGTGCAGGAAACAGTTGCTCATTTTGGTATCGATACCAGTTCTCGAGTATTGATACT
* * * *
84585305 TGGGGTAAAAATATAGATACTTTTGAATTATATCGATAAATTGGTGGATTTTGGATTTTGAA-AA
194 CGGGGTAAAAATATAGATACTTTTGAATTGTATCGATAAATTGATGGGTTTT-GATTTTGAAGAA
* * * * * *
84585369 AGATCAAAATGTTAAAAAGGTTTCAATTTTCCAAACGGTATTGATACCAATTTAT-AAAAATATC
258 A-AT-AGAATGTTAAAAAGGTATCGATTTTCCAAACGGTATCGATACCCATTT-TGAGAAATATC
* * *
84585433 GATTCCCATTTAGATGTTCTCATTTAATGTATGATATCATATTTGTTGGTAG-TTTTTCCCTATC
320 GATTCCCATTTAGATGTTCTCATTTAATGTATGATATCATGTTTATTGGTAGTTTTTTCCCGATC
* * * *
84585497 ATCCCCTAAGCTTGTTTAAGCTCACACACTCTTTTATGAACCTTTGTAGATAGTTAGTGTTTCCG
385 ATTCACTAAGCTTGTTTAAGCTCACACACTCTTTTCTGAACCTTTGCAGATAGTTAGTGTTTCCG
* *
84585562 GTGTGGGCAGTGCGGAATTCCAACGAAGTGATCCAAGTTAGGCTTAGTGTTTGAGTAGGTGATAT
450 GTGTGGGCGGTGCGGAATTCCAAGGAAGTGATCCAAGTTAGGCTTAGTGTTTGAGTAGGTGATAT
* *
84585627 TATTGCTATTAGTTTTT-AACTGTGGGAATAAGAAAATGTGGTAAAATTGTTGGTTGATTATTAT
515 TATTGCTATTA-TTTTTGAACTGT-GGAATAAGACAATGTGGTAGAATTGTTGGTTGATTATTAT
* * * *
84585691 CATGATTTTTTAAATGATTATTTTGCTTTTAATACTCTTAGGTTCGTGGACGTTGCT-TTAGTTC
578 CATGATGTTTTAAATGATTATTTTGATTTTAATACTCTTAGGTTCGTGGACGTTGTTATTAGTTT
* * * *
84585755 ATTGGCTTGCTTGGTTGAAATTATTTATATTGTTATGGACTGCAAATATGAACA-TTTGATGTTT
643 ATTGGTTTGCTTGGTTGAAATTATTTATATTGCTATGGACTGCAAATATGGACATTTTGATGTTG
84585819 AAT
708 AAT
* * *
84585822 ATTGAAGTGATGGATGCATGTTAAAGTGGTATGTGATTGAGTATGTGGAATGCTCTATTTTGCTA
1 ATTGAAGTTATGGATGCATGTTGAAGTGGTATGTGATTGAGTATGTGGAATGCCCTATTTTGCTA
* * * * *
84585887 GAATTTTTGTAGAATTATATAGAGGTATTGATAATCGGGGGCATATGCATCGATACTTCTGAGTT
66 GAATTTTTGCAGAATTATACAGAGGTATCGATAATC-AGGGCATATGTATCGATACTTCTGAGTT
* * *
84585952 GAAACGAATGTGCAGGAAACAATCGCTCATTTTGGTATCGATACCAGTTCTCGAGTATCGATACT
130 GAAAC-AATGTGCAGGAAACAGTTGCTCATTTTGGTATCGATACCAGTTCTCGAGTATTGATACT
* * *
84586017 CGGGGTAAAAATATAGATACTTTTGAATTGTATCGCTAAATTGATAGGTTTTGAATTTTGTAGAA
194 CGGGGTAAAAATATAGATACTTTTGAATTGTATCGATAAATTGATGGGTTTTG-ATTTTGAAGAA
* * *
84586082 AATCAAAATGTTAAAAAGGT-TCCGATTTTCCAAATGGTATCGATACCCATTTTGAGAAATATTG
258 AAT-AGAATGTTAAAAAGGTAT-CGATTTTCCAAACGGTATCGATACCCATTTTGAGAAATATCG
84586146 ATT-CCAGTTTAGATGTTCTCATTTAATGCT-TGATATCATGTTTATTGGTAGTTTTTTCCCGAT
321 ATTCCCA-TTTAGATGTTCTCATTTAATG-TATGATATCATGTTTATTGGTAGTTTTTTCCCGAT
* * * * * *
84586209 CATTCACTAAGCTTGTATAAGCTCATACACTATTTTCTGAACCTTTGCACATAGTTAGTATTTTC
384 CATTCACTAAGCTTGTTTAAGCTCACACACTCTTTTCTGAACCTTTGCAGATAGTTAGTGTTTCC
* * ** * * * *
84586274 GGTGTAGGCGGTACAAAATTCTAAGGAAGTGATCAAAGTTAGGTTTAGTGTTTGAATAGGTGATA
449 GGTGTGGGCGGTGCGGAATTCCAAGGAAGTGATCCAAGTTAGGCTTAGTGTTTGAGTAGGTGATA
* *
84586339 TTATTGCTATTATTTTTGAACTGTAGGAATAAGACAATATGGTTGAATTGTTGGTTGATTATTAT
514 TTATTGCTATTATTTTTGAACTGT-GGAATAAGACAATGTGGTAGAATTGTTGGTTGATTATTAT
* *
84586404 CATGATTTTTTAAATGATTATTTTGATTTTAATACTCTTAGGTTCGTGGACGTTGCTATTAGTTT
578 CATGATGTTTTAAATGATTATTTTGATTTTAATACTCTTAGGTTCGTGGACGTTGTTATTAGTTT
* * * * *
84586469 A-TCGTTTCCTTGCTTGAAATTATTGATATTGCTATGGACTACATAA-ATGGACATTTTGATGTT
643 ATTGGTTTGCTTGGTTGAAATTATTTATATTGCTATGGACTGCA-AATATGGACATTTTGATGTT
* *
84586532 TAAG
707 GAAT
* * * * * * *
84586536 ATTGAAGTTATAGATGCATATTGACGTGGTATGTGATTGGGTATATGGAATGCCTTGTTTTGCTA
1 ATTGAAGTTATGGATGCATGTTGAAGTGGTATGTGATTGAGTATGTGGAATGCCCTATTTTGCTA
* * * *
84586601 GAATTTTTGTATAATTATACAGAGGTATCGATAATCAGGGCACATGTATCGATACTTCTAAGTTG
66 GAATTTTTGCAGAATTATACAGAGGTATCGATAATCAGGGCATATGTATCGATACTTCTGAGTTG
* * ** * * * *
84586666 GAACAAATGTGTAGGAAATGGCTGCTCATTTTGGTATTGATACTAGTTCTTGAGTATTGATACTC
131 AAAC-AATGTGCAGGAAACAGTTGCTCATTTTGGTATCGATACCAGTTCTCGAGTATTGATACTC
* * * * * * **
84586731 GGGATAAAAATATAGGTAGTTTTGAATTATATTGATAAATTGCTGAATTTTAGATTTTGAA-AAA
195 GGGGTAAAAATATAGATACTTTTGAATTGTATCGATAAATTGATGGGTTTT-GATTTTGAAGAAA
* *
84586795 GATCAGAATGTTAAAAAGGT-TCTGATTTTCCAAACGGTGTCGATACCCATTTAT-AGAAATACC
259 -AT-AGAATGTTAAAAAGGTATC-GATTTTCCAAACGGTATCGATACCCATTT-TGAGAAATATC
* * *
84586858 GATTCTCATTTAGATGTTCTCATTTAATGTATGATATGATGTTTATTGGTAGTTTTTTCCCAATC
320 GATTCCCATTTAGATGTTCTCATTTAATGTATGATATCATGTTTATTGGTAGTTTTTTCCCGATC
*
84586923 ATTCACTAAACTTGTTTAAGCTCACACACTCTTTTCTGAACCTTTGCA-AGTAGTTAGTGTTTCC
385 ATTCACTAAGCTTGTTTAAGCTCACACACTCTTTTCTGAACCTTTGCAGA-TAGTTAGTGTTTCC
* *
84586987 GGTGTGGGCGGTGCAGAATTCCAAGGAAGTGATCCAAGTTAGGCTTAGTGTTTGAGTAGGTAATA
449 GGTGTGGGCGGTGCGGAATTCCAAGGAAGTGATCCAAGTTAGGCTTAGTGTTTGAGTAGGTGATA
*
84587052 TTATTGCTATTATTTTTGAACTGTGGGAATAAGACAATGTTGTAGAATTGTTGGTTGATTATTAT
514 TTATTGCTATTATTTTTGAACTGT-GGAATAAGACAATGTGGTAGAATTGTTGGTTGATTATTAT
* * *
84587117 C------------ATGATTATTTTAATTTTAATAATCTTAGGTTTGTGGACGTTGTTATTAGTTT
578 CATGATGTTTTAAATGATTATTTTGATTTTAATACTCTTAGGTTCGTGGACGTTGTTATTAGTTT
* * * * **
84587170 ATTGGTTTGCTTTGTTGAAATTATTCATATTGCTATAGATTTTAAATATGGACATTTTGATGTTG
643 ATTGGTTTGCTTGGTTGAAATTATTTATATTGCTATGGACTGCAAATATGGACATTTTGATGTTG
84587235 AAT
708 AAT
* * * *
84587238 ATTGAAGCTACT-GATGCATGTTAAAGTGGTATGTGATTGAGTATGTGGAATGCCTTATGTTGCT
1 ATTGAAGTTA-TGGATGCATGTTGAAGTGGTATGTGATTGAGTATGTGGAATGCCCTATTTTGCT
* * * *
84587302 GGAATTTTTGCAGAATTATACAGAGGTATCAATAATCAGGGCATACGTATCAATACTTCTGAGTT
65 AGAATTTTTGCAGAATTATACAGAGGTATCGATAATCAGGGCATATGTATCGATACTTCTGAGTT
* ** * * * * *
84587367 GAAACAATTGTGCAAGAAGTAGTAGCTCTTTTTGGTATC-AAATCTAATTCTCGAGTATTGATAC
130 GAAACAA-TGTGCAGGAAACAGTTGCTCATTTTGGTATCGATA-CCAGTTCTCGAGTATTGATAC
* * * * * *
84587431 TTGGGGTAAAAATATAGATACTTTTGGATTATATCAATAAATTGTTGGGTTTTGAATTTTGAATA
193 TCGGGGTAAAAATATAGATACTTTTGAATTGTATCGATAAATTGATGGGTTTTG-ATTTTGAAGA
* * * * *
84587496 AAAGAAAAATTTTAAAAA-GTATCGATTTTCCAAACGGTATCGATACCTATTTTTAGAAATATCG
257 AAA-TAGAATGTTAAAAAGGTATCGATTTTCCAAACGGTATCGATACCCATTTTGAGAAATATCG
* * * * *
84587560 ATACTCATTTAGATATTCTCATTTAATGTATGATATCATGTTTATTGGTAGTTTTTTTCTCAATC
321 ATTCCCATTTAGATGTTCTCATTTAATGTATGATATCATGTTTATTGGTAG-TTTTTTCCCGATC
* * * * * * * *
84587625 ATTCACTGAGTTTGTTTAAGCT--CATA-TCTTTTCTAAACTTTTGTAGATTGTTAGTGGTTCCG
385 ATTCACTAAGCTTGTTTAAGCTCACACACTCTTTTCTGAACCTTTGCAGATAGTTAGTGTTTCCG
* * ** * **
84587687 ATGTGGGCGATGCGGAATTCTTAGAAAGTGATTGAAGTTAGGCTTAGTGTTTGAGTAGGTGATAT
450 GTGTGGGCGGTGCGGAATTCCAAGGAAGTGATCCAAGTTAGGCTTAGTGTTTGAGTAGGTGATAT
* * * * *
84587752 TATTGCTATTATTTTTGAACTGTGAGAATGAGTCAACGTGATAGAATTGTTGGTTGATTACTATC
515 TATTGCTATTATTTTTGAACTGTG-GAATAAGACAATGTGGTAGAATTGTTGGTTGATTATTATC
* * * * *
84587817 ATGATGTTTTAAATGATTATTTTGATTTTAAGACTTTTAGGTTCATGGATGGTGTTATTAGTTTA
579 ATGATGTTTTAAATGATTATTTTGATTTTAATACTCTTAGGTTCGTGGACGTTGTTATTAGTTTA
* * *
84587882 TTGGTTTGCTTGGTTGAAATTATTTATACTGCTATGGACCG-AGAATATGGACATTTTGATGTTT
644 TTGGTTTGCTTGGTTGAAATTATTTATATTGCTATGGACTGCA-AATATGGACATTTTGATGTTG
84587946 AAT
708 AAT
* *
84587949 GTTGAAGTTATGGATGCATGTTGAAGTGGTATGTGATTGAGTATGTGGAATGCCCTATTTTGCTT
1 ATTGAAGTTATGGATGCATGTTGAAGTGGTATGTGATTGAGTATGTGGAATGCCCTATTTTGCTA
* * *
84588014 GAATTTTTGCAGAATTATACAGAGGTATCGATAATCGGGGCATATATATCTATACTTCTGAGTTG
66 GAATTTTTGCAGAATTATACAGAGGTATCGATAATCAGGGCATATGTATCGATACTTCTGAGTTG
* * * *
84588079 AAACGAATGCGCAGGAAACAGTTGCTCACTTTT-GTATCAATACCAGTTCTTGAGTATCGATACT
131 AAAC-AATGTGCAGGAAACAGTTGCTCA-TTTTGGTATCGATACCAGTTCTCGAGTATTGATACT
* * * *
84588143 CAGGCTAAAAAGATAGATACTTTTTAATTGTATCGATAAATTGATGGGTTTTGGATTTTGAAGAA
194 CGGGGTAAAAATATAGATACTTTTGAATTGTATCGATAAATTGATGGGTTTT-GATTTTGAAG-A
* ** * * * * * *
84588208 AAACAGAATGTTAAAAAGGTATTAATTTTTCAAACGATATCCATACCCATTTCGAAAAATATCTA
257 AAATAGAATGTTAAAAAGGTATCGATTTTCCAAACGGTATCGATACCCATTTTGAGAAATATCGA
* * * *
84588273 TACCCATTTAGATATTCTAATTTAATGTATGATATCATGTTTATTGGTAGTTTTTTCCCGACCAT
322 TTCCCATTTAGATGTTCTCATTTAATGTATGATATCATGTTTATTGGTAGTTTTTTCCCGATCAT
* * *
84588338 TCACTGAGCTTGTTTAAGCTCACACACTCTTTTCTGAACCTTTGTAGATAGTTAGTGTGTT-TGG
387 TCACTAAGCTTGTTTAAGCTCACACACTCTTTTCTGAACCTTTGCAGATAGTTAGTGT-TTCCGG
* * * * * *
84588402 TGTGAGCGGTGCTGAATTTCAAGGAAGCGATCCAAGTTAGGCTTAGTGTTTGAGTTGATGATATT
451 TGTGGGCGGTGCGGAATTCCAAGGAAGTGATCCAAGTTAGGCTTAGTGTTTGAGTAGGTGATATT
* * *
84588467 ATTGCTATTATTTTTTAGCTGTGAAAATAAGACAATGTGGTAGAATTGTTGGTTGATTATTATCA
516 ATTGCTATTATTTTTGAACTGTG-GAATAAGACAATGTGGTAGAATTGTTGGTTGATTATTATCA
* * *
84588532 TAATGTTTGAAATG---A--TT-ATTTTAATACTCTTAGGTTCTTGGACGTTGTTATTAGTTTAT
580 TGATGTTTTAAATGATTATTTTGATTTTAATACTCTTAGGTTCGTGGACGTTGTTATTAGTTTAT
* * * * *
84588591 TGGTTTGGTTGGTTGAAATTATTGATATTGCTATGGATTGCAAATATGAAAATTTTGATGTT-AA
645 TGGTTTGCTTGGTTGAAATTATTTATATTGCTATGGACTGCAAATATGGACATTTTGATGTTGAA
84588655 TT
710 -T
* * * * * ** *
84588657 ATTAAATTTATAGATGTATGTTGAAGTGGTATATGATTGAGTATGTTCAATGCCCTATTTTCCTA
1 ATTGAAGTTATGGATGCATGTTGAAGTGGTATGTGATTGAGTATGTGGAATGCCCTATTTTGCTA
* * * * *
84588722 GAATTTTTGCAGAATTATACAAATGTATCAATAAAC-GAGGCATATGTATCGATACTTTTGAGTT
66 GAATTTTTGCAGAATTATACAGAGGTATCGATAATCAG-GGCATATGTATCGATACTTCTGAGTT
** * * * * * *
84588786 GAAGTGAATGTGCAAGAAATAGTTGCTCACTTTGG--T--A-ACGAG-----GAATATAGATACT
130 GAA-ACAATGTGCAGGAAACAGTTGCTCATTTTGGTATCGATACCAGTTCTCGAGTATTGATACT
*** *** * * * ** * * * ***** *
84588841 -TTTG-AATTTTATTGATAAATTACTGGGTT-T-TGGAT--TTTGAAGAAAAACTGAATGTT-AA
194 CGGGGTAAAAATATAGAT-ACTT-TTGAATTGTATCGATAAATTGATG-GGTTTTG-ATTTTGAA
* * * ** * * * *
84588899 -AAATGTATCGATTTTTTCAACGGTATCGATACCCATTTCGAGAA--ATATCGATACACA-TTT-
255 GAAA---ATAGAATGTTAAAAAGGTATCGAT-----TTTCCA-AACGGTATCGATACCCATTTTG
*
84588959 AG----AT-G-TTCTCATTTA-A---T-TC---------ATGATATCATGTTTATTGGTAGTTTT
311 AGAAATATCGATTCCCATTTAGATGTTCTCATTTAATGTATGATATCATGTTTATTGGTAG-TTT
* * * *
84589004 TTTCCTGATCATTCACTAAGCTTGTTTAAGCTCAAACACTCTTTTCTAAACCTTTGTAGATAGTT
375 TTTCCCGATCATTCACTAAGCTTGTTTAAGCTCACACACTCTTTTCTGAACCTTTGCAGATAGTT
*** * **
84589069 AGTGTTTTTAGTGTAGGCGGTGCAAAATTCCAAGGAAGTGATCCAAGTTAGGCTTAGTGTTTGAG
440 AGTGTTTCCGGTGTGGGCGGTGCGGAATTCCAAGGAAGTGATCCAAGTTAGGCTTAGTGTTTGAG
* * * * * ***
84589134 TAAGTGATATTATTGCTA-T-TGTTTG-A-T-T---ATTA-TC-A--TGAT-G--TT-TTAAATG
505 TAGGTGATATTATTGCTATTATTTTTGAACTGTGGAATAAGACAATGTGGTAGAATTGTTGGTTG
* * ** * * *
84589183 ATTATT-T--TGA--TTTT-AAT-A--CTCTT-AGGTTCATGGAC-GTT--GTTAGT--A-G-T-
570 ATTATTATCATGATGTTTTAAATGATTATTTTGATTTTAAT--ACTCTTAGGTTCGTGGACGTTG
* * * * * ** * *
84589230 TTATTGGTTTGCTTGG-TTGAAATT-ATTGATAATTATATGGATTGCAAAT--A-TGGAAAT-T-
633 TTATTAGTTT-ATTGGTTTG--CTTGGTTGA-AATTATTTATATTGC-TATGGACTGCAAATATG
* *
84589288 ----T--TGATATTGATT
693 GACATTTTGATGTTGAAT
* * *
84589300 ATTGAAGTTATGGATGCATGTTGAAGTGGTATATGATTGAGTATGTGGAATGCCCTATTTTACTT
1 ATTGAAGTTATGGATGCATGTTGAAGTGGTATGTGATTGAGTATGTGGAATGCCCTATTTTGCTA
* * * *
84589365 GAATTTTTGTAGAATTATACAGAAGTATCGATAAATGA-GGCATATGTGTCGATACTTCTGAGTT
66 GAATTTTTGCAGAATTATACAGAGGTATCGAT-AATCAGGGCATATGTATCGATACTTCTGAGTT
* * * * *
84589429 GAAACGAATGTGTAGGAAACAATTGCTCATTTTGGTATCGATACCAATTCTTGAGTATCGATACT
130 GAAAC-AATGTGCAGGAAACAGTTGCTCATTTTGGTATCGATACCAGTTCTCGAGTATTGATACT
* * * * *
84589494 CAGTGTAAAAATTTAGATACTTTTGAATTGTATCGATAAATTGTTGGATTTTAGATTTTGAAGAA
194 CGGGGTAAAAATATAGATACTTTTGAATTGTATCGATAAATTGATGGGTTTT-GATTTTGAAG-A
* * * * *
84589559 AAATTGAATGTTAAAAAGGTATCGAGTTTCCAAATGGTATCAATACCTC-TTTTGAGAAATATTG
257 AAATAGAATGTTAAAAAGGTATCGATTTTCCAAACGGTATCGATACC-CATTTTGAGAAATATCG
* * * ** ** *
84589623 ATACCCATTTAGTTGTTCTCATATAATGTATGATATTGTGTTTATTTTTTA-TTTTTTCTCTCAA
321 ATTCCCATTTAGATGTTCTCATTTAATGTATGATATCATGTTTA-TTGGTAGTTTTTTC-C-CGA
* * * *
84589687 TCGTTCACTGAGCTTGTTTAAGCTCACACACTCTTTTCTAAACTTTTGCAGATAGTTAGTGTTTC
383 TCATTCACTAAGCTTGTTTAAGCTCACACACTCTTTTCTGAACCTTTGCAGATAGTTAGTGTTTC
* * * * * *
84589752 CGGTATGGGTGGTGTGAAATT-CTAGGAAACTGATCCAAGTTAGGCTTAGTGTTTGAGTAGGTGA
448 CGGTGTGGGCGGTGCGGAATTCCAAGG-AAGTGATCCAAGTTAGGCTTAGTGTTTGAGTAGGTGA
* * *
84589816 TATTATTACTATTATTTTTGAACTGTGGGAATAAGACAA-----T---A----TAGTTGA-AATT
512 TATTATTGCTATTATTTTTGAACTGT-GGAATAAGACAATGTGGTAGAATTGTTGGTTGATTATT
* * * *
84589868 ATCATGATGTTTTAAGTGATTATTTTGATTTCAATGCTCTTAGGTTCGTGGACTTTGTTATTAGT
576 ATCATGATGTTTTAAATGATTATTTTGATTTTAATACTCTTAGGTTCGTGGACGTTGTTATTAGT
* * * *
84589933 TTATTGGTTTGCTTGGTTGAAATTATTCATAGTGCTATAGACTTCAAATATGGACATTTTGATGT
641 TTATTGGTTTGCTTGGTTGAAATTATTTATATTGCTATGGACTGCAAATATGGACATTTTGATGT
84589998 TGAAT
706 TGAAT
* * ** *
84590003 ATTGAAGTTATGGATGCATGTTGAAGTGGTTTGTGATTTAGTATACGGAATGCCCTGTTTTAG-T
1 ATTGAAGTTATGGATGCATGTTGAAGTGGTATGTGATTGAGTATGTGGAATGCCCTATTTT-GCT
* * * * * * * *
84590067 TGAATTTTTGCAGAATTATACTA-A-GAATTCGATAATCGGGGCATATATATCGATATTTTTTAT
65 AGAATTTTTGCAGAATTATAC-AGAGGTA-TCGATAATCAGGGCATATGTATCGATACTTCTGAG
* * * * * *
84590130 TTGAAACAAATGTGCATGAAACAATTCCTCATTTTTGTATCGATACCATTTCTCGAGTATGGATA
128 TTGAAAC-AATGTGCAGGAAACAGTTGCTCATTTTGGTATCGATACCAGTTCTCGAGTATTGATA
* * *
84590195 CTCGGGGTAAAATTATAGATACTTTTGAATTGTATCGATAAAATGCTGGGTTTTAGATTTTGAAG
192 CTCGGGGTAAAAATATAGATACTTTTGAATTGTATCGATAAATTGATGGGTTTT-GATTTTGAAG
* * * * *
84590260 AAAAACAGAATGTTAAAAATGTACCAATTTTCCAAACAGTATCGATA--C--------------C
256 -AAAATAGAATGTTAAAAAGGTATCGATTTTCCAAACGGTATCGATACCCATTTTGAGAAATATC
*
84590309 ---T---ATTTAGATGTTCTCATTTAATGTATTATATCATGTTTATTGGTAGTTTTTTCCCGATC
320 GATTCCCATTTAGATGTTCTCATTTAATGTATGATATCATGTTTATTGGTAGTTTTTTCCCGATC
* * ** * *
84590368 ATTCGCTGAGCTTGTTTAAGCTCACACGTTTTTTTCT-AATCTTTTGCAGATAGTTAGTGTTTCC
385 ATTCACTAAGCTTGTTTAAGCTCACACACTCTTTTCTGAA-CCTTTGCAGATAGTTAGTGTTTCC
* *
84590432 GGTGTGGGCGGTGTGGAATTCCAAGGAAGTGATCCAAGTTAGGCTTAGTGTTTAAGTAGGTGATA
449 GGTGTGGGCGGTGCGGAATTCCAAGGAAGTGATCCAAGTTAGGCTTAGTGTTTGAGTAGGTGATA
* * * * *
84590497 TTATTGCTATTATTTTTGAAGTGTGCGAATAAGATAATGTGATTGAATTGTTGGCTGATTATTAT
514 TTATTGCTATTATTTTTGAACTGTG-GAATAAGACAATGTGGTAGAATTGTTGGTTGATTATTAT
* * * * * *
84590562 CATGATGGTTGAAATGATTATTTTGTTTTTAATACTCTTTGG-TCTATGGGCGTTGTTATTAGTT
578 CATGATGTTTTAAATGATTATTTTGATTTTAATACTCTTAGGTTC-GTGGACGTTGTTATTAGTT
* * * * * * *
84590626 TATTGGTTTGTTTCGTTGAAATTATTTATATCGCTTTGGACTTCAAATATGGATATTTTGATGTC
642 TATTGGTTTGCTTGGTTGAAATTATTTATATTGCTATGGACTGCAAATATGGACATTTTGATGTT
84590691 GAAT
707 GAAT
* * **
84590695 ATGGAAGTTATGGATTCACATTGAAGTGGTATGTGATTGAGTATGTGGAATGCCCTATTTTGCTA
1 ATTGAAGTTATGGATGCATGTTGAAGTGGTATGTGATTGAGTATGTGGAATGCCCTATTTTGCTA
* * * * ** * * *
84590760 AAATTTTTACAGAATTTTACAGTGGTATTAATAAT-AGTGGCATACGTATCAATACTTTTGAGTT
66 GAATTTTTGCAGAATTATACAGAGGTATCGATAATCAG-GGCATATGTATCGATACTTCTGAGTT
* * * * * *
84590824 GAAATGAATGTGTAGGAAACAATTGCTCATTTTGGTATCTATACTAGTTCTCGAGTATTAATACT
130 GAAA-CAATGTGCAGGAAACAGTTGCTCATTTTGGTATCGATACCAGTTCTCGAGTATTGATACT
* * *
84590889 CGGGGTAAAAATATAGATACTTTTGAATTGTATCAATAAATTGCTGAGTTTTGAATTTTGAAGAA
194 CGGGGTAAAAATATAGATACTTTTGAATTGTATCGATAAATTGATGGGTTTTG-ATTTTGAAG-A
* * * * *
84590954 AAACAAAATGTTAAAAAGGTATCGATTTTTCGAACGGTATCGATACCTATTTTGAGAAATATCGA
257 AAATAGAATGTTAAAAAGGTATCGATTTTCCAAACGGTATCGATACCCATTTTGAGAAATATCGA
84591019 T
322 T
84591020 GCCAGTATGT
Statistics
Matches: 5531, Mismatches: 846, Indels: 491
0.81 0.12 0.07
Matches are distributed among these distances:
643 143 0.03
644 3 0.00
645 2 0.00
647 1 0.00
648 3 0.00
650 3 0.00
651 23 0.00
652 18 0.00
653 33 0.01
654 11 0.00
655 14 0.00
656 30 0.01
657 14 0.00
658 6 0.00
659 6 0.00
660 9 0.00
661 10 0.00
662 2 0.00
664 2 0.00
665 5 0.00
667 1 0.00
668 1 0.00
669 3 0.00
673 8 0.00
674 19 0.00
675 123 0.02
676 5 0.00
677 30 0.01
678 137 0.02
679 150 0.03
680 16 0.00
681 40 0.01
682 3 0.00
683 1 0.00
684 8 0.00
685 3 0.00
686 3 0.00
687 3 0.00
688 5 0.00
689 4 0.00
690 6 0.00
691 19 0.00
692 369 0.07
693 16 0.00
694 18 0.00
695 37 0.01
696 12 0.00
697 5 0.00
698 17 0.00
699 153 0.03
700 10 0.00
701 145 0.03
702 310 0.06
703 270 0.05
704 2 0.00
706 1 0.00
707 6 0.00
708 226 0.04
709 3 0.00
710 3 0.00
711 603 0.11
712 882 0.16
713 801 0.14
714 712 0.13
715 4 0.00
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.40
Consensus pattern (710 bp):
ATTGAAGTTATGGATGCATGTTGAAGTGGTATGTGATTGAGTATGTGGAATGCCCTATTTTGCTA
GAATTTTTGCAGAATTATACAGAGGTATCGATAATCAGGGCATATGTATCGATACTTCTGAGTTG
AAACAATGTGCAGGAAACAGTTGCTCATTTTGGTATCGATACCAGTTCTCGAGTATTGATACTCG
GGGTAAAAATATAGATACTTTTGAATTGTATCGATAAATTGATGGGTTTTGATTTTGAAGAAAAT
AGAATGTTAAAAAGGTATCGATTTTCCAAACGGTATCGATACCCATTTTGAGAAATATCGATTCC
CATTTAGATGTTCTCATTTAATGTATGATATCATGTTTATTGGTAGTTTTTTCCCGATCATTCAC
TAAGCTTGTTTAAGCTCACACACTCTTTTCTGAACCTTTGCAGATAGTTAGTGTTTCCGGTGTGG
GCGGTGCGGAATTCCAAGGAAGTGATCCAAGTTAGGCTTAGTGTTTGAGTAGGTGATATTATTGC
TATTATTTTTGAACTGTGGAATAAGACAATGTGGTAGAATTGTTGGTTGATTATTATCATGATGT
TTTAAATGATTATTTTGATTTTAATACTCTTAGGTTCGTGGACGTTGTTATTAGTTTATTGGTTT
GCTTGGTTGAAATTATTTATATTGCTATGGACTGCAAATATGGACATTTTGATGTTGAAT
Found at i:84590845 original size:692 final size:680
Alignment explanation
Indices: 84589156--84591005 Score: 2124
Period size: 692 Copynumber: 2.7 Consensus size: 680
84589146 TTGCTATTGT
84589156 TTGATTATTATCATGATGTTTTAAATGATTATTTTGATTTTAATACTCTTAGGTTCATGGACGTT
1 TTGATTATTATCATGATGTTTTAAATGATTATTTTGATTTTAATACTCTTAGGTTCATGGACGTT
* * **
84589221 GTTAGTAGTTTATTGGTTTGCTTGGTTGAAATTATTGATAATTATATGGA-TTGCAAATATGGAA
66 GTTATTAGTTTATTGGTTTGCTTGGTTGAAATTATTCAT-ATGCTATGGACTT-CAAATATGGAA
* * *
84589285 ATTTTGATATTGATTATTGAAGTTATGGATGCATGTTGAAGTGGTATATGATTGAGTATGTGGAA
129 ATTTTGATGTTGAATATTGAAGTTATGGATGCATGTTGAAGTGGTATGTGATTGAGTATGTGGAA
* * * * *
84589350 TGCCCTATTTTACTTGAATTTTTGTAGAATTATACAGAAGTATCGATAA-ATGAGGCATATGTGT
194 TGCCCTATTTTGCTTGAATTTTTGCAGAATTATACAGTAGTATTGATAATA-GAGGCATATGTAT
*
84589414 CGATACTTCTGAGTTGAAACGAATGTGTAGGAAACAATTGCTCATTTTGGTATCGATACCAATTC
258 CGATACTTTTGAGTTGAAACGAATGTGTAGGAAACAATTGCTCATTTTGGTATCGATACCAATTC
* * * * *
84589479 TTGAGTATCGATACTCAGTGTAAAAATT-TAGATACTTTTGAATTGTATCGATAAATTGTTGGAT
323 TCGAGTATCGATACTCGGGGT-AAAATTATAGATACTTTTGAATTGTATCGATAAATTGCTGGGT
** * *
84589543 TTTAGATTTTGAAGAAAAATTGAATGTTAAAAAGGTATCGAGTTTCCAAATGGTATCAATACCTC
387 TTTAGATTTTGAAGAAAAACAGAATGTT-AAAA---AT---G-TACC-AAT--TTTCAA-A---C
* * * ** **
84589608 TTTTGAGAAATATTGATACCCATTTAGTTGTTCTCATATAATGTATGATATTGTGTTTATTTTTT
437 -----AG---TATCGATACCTATTTAGATGTTCTCATATAATGTATGATATCATGTTTATTTGGT
*
84589673 ATTTTTTCTCTCAATCGTTCACTGAGCTTGTTTAAGCTCACACACTCTTTTCTAAACTTTTGCAG
494 ATTTTTTCTCTCAATCATTCACTGAGCTTGTTTAAGCTCACACACTCTTTTCTAAACTTTTGCAG
* *
84589738 ATAGTTAGTGTTTCCGGTATGGGTGGTGTGAAATTCTAGGAAACTGATCCAAGTTAGGCTTAGTG
559 ATAGTTAGTGTTTCCGGTATGGGCGGTGTGAAATTCAAGGAAACTGATCCAAGTTAGGCTTAGTG
* *
84589803 TTTGAGTAGGTGATATTATTACTATTATTTTTGAACTGTGGGAATAAGACAATATAG
624 TTTAAGTAGGTGATATTATTACTATTATTTTTGAACTGTGCGAATAAGACAATATAG
* * * * * *
84589860 TTGA-AATTATCATGATGTTTTAAGTGATTATTTTGATTTCAATGCTCTTAGGTTCGTGGACTTT
1 TTGATTATTATCATGATGTTTTAAATGATTATTTTGATTTTAATACTCTTAGGTTCATGGACGTT
* *
84589924 GTTATTAGTTTATTGGTTTGCTTGGTTGAAATTATTCATAGTGCTATAGACTTCAAATATGGACA
66 GTTATTAGTTTATTGGTTTGCTTGGTTGAAATTATTCATA-TGCTATGGACTTCAAATATGGAAA
* * **
84589989 TTTTGATGTTGAATATTGAAGTTATGGATGCATGTTGAAGTGGTTTGTGATTTAGTATACGGAAT
130 TTTTGATGTTGAATATTGAAGTTATGGATGCATGTTGAAGTGGTATGTGATTGAGTATGTGGAAT
* * * * *
84590054 GCCCTGTTTTAG-TTGAATTTTTGCAGAATTATAC--TAAGAATTCGATAATCGGGGCATATATA
195 GCCCTATTTT-GCTTGAATTTTTGCAGAATTATACAGT-AGTATT-GATAATAGAGGCATATGTA
* * * * * * * * *
84590116 TCGATATTTTTTATTTGAAACAAATGTGCATGAAACAATTCCTCATTTTTGTATCGATACCATTT
257 TCGATACTTTTGAGTTGAAACGAATGTGTAGGAAACAATTGCTCATTTTGGTATCGATACCAATT
* *
84590181 CTCGAGTATGGATACTCGGGGTAAAATTATAGATACTTTTGAATTGTATCGATAAAATGCTGGGT
322 CTCGAGTATCGATACTCGGGGTAAAATTATAGATACTTTTGAATTGTATCGATAAATTGCTGGGT
84590246 TTTAGATTTTGAAGAAAAACAGAATGTTAAAAATGTACCAATTTTCCAAACAGTATCGATACCTA
387 TTTAGATTTTGAAGAAAAACAGAATGTTAAAAATGTACCAATTTT-CAAACAGTATCGATACCTA
* * * *
84590311 TTTAGATGTTCTCATTTAATGTATTATATCATGTTTA-TTGGTAGTTTTTTC-C-CGATCATTCG
451 TTTAGATGTTCTCATATAATGTATGATATCATGTTTATTTGGTA-TTTTTTCTCTCAATCATTCA
** * * *
84590373 CTGAGCTTGTTTAAGCTCACACGTTTTTTTCTAATCTTTTGCAGATAGTTAGTGTTTCCGGTGTG
515 CTGAGCTTGTTTAAGCTCACACACTCTTTTCTAAACTTTTGCAGATAGTTAGTGTTTCCGGTATG
* *
84590438 GGCGGTGTGGAATTCCAAGG-AAGTGATCCAAGTTAGGCTTAGTGTTTAAGTAGGTGATATTATT
580 GGCGGTGTGAAATT-CAAGGAAACTGATCCAAGTTAGGCTTAGTGTTTAAGTAGGTGATATTATT
* * *
84590502 GCTATTATTTTTGAAGTGTGCGAATAAGATAATGTGATTGAATTG
644 ACTATTATTTTTGAACTGTGCGAATAAGACAA--T-A-T--A--G
* * * *
84590547 TTGGCTGATTATTATCATGATGGTTGAAATGATTATTTTGTTTTTAATACTCTTTGG-TCTATGG
1 -T---TGATTATTATCATGATGTTTTAAATGATTATTTTGATTTTAATACTCTTAGGTTC-ATGG
* * * * *
84590611 GCGTTGTTATTAGTTTATTGGTTTGTTTCGTTGAAATTATTTATATCGCTTTGGACTTCAAATAT
61 ACGTTGTTATTAGTTTATTGGTTTGCTTGGTTGAAATTATTCATAT-GCTATGGACTTCAAATAT
* * * * **
84590676 GGATATTTTGATGTCGAATATGGAAGTTATGGATTCACATTGAAGTGGTATGTGATTGAGTATGT
125 GGAAATTTTGATGTTGAATATTGAAGTTATGGATGCATGTTGAAGTGGTATGTGATTGAGTATGT
** * * * * * *
84590741 GGAATGCCCTATTTTGCTAAAATTTTTACAGAATTTTACAGTGGTATTAATAATAGTGGCATACG
190 GGAATGCCCTATTTTGCTTGAATTTTTGCAGAATTATACAGTAGTATTGATAATAGAGGCATATG
* * * * *
84590806 TATCAATACTTTTGAGTTGAAATGAATGTGTAGGAAACAATTGCTCATTTTGGTATCTATACTAG
255 TATCGATACTTTTGAGTTGAAACGAATGTGTAGGAAACAATTGCTCATTTTGGTATCGATACCAA
** * * *
84590871 TTCTCGAGTATTAATACTCGGGGTAAAAATATAGATACTTTTGAATTGTATCAATAAATTGCTGA
320 TTCTCGAGTATCGATACTCGGGGTAAAATTATAGATACTTTTGAATTGTATCGATAAATTGCTGG
* * * * * *
84590936 GTTTT-GAATTTTGAAGAAAAACAAAATGTTAAAAAGGTATCGATTTTTCGAACGGTATCGATAC
385 GTTTTAG-ATTTTGAAGAAAAACAGAATGTTAAAAATGTA-CCAATTTTCAAACAGTATCGATAC
84591000 CTATTT
448 CTATTT
84591006 TGAGAAATAT
Statistics
Matches: 977, Mismatches: 139, Indels: 72
0.82 0.12 0.06
Matches are distributed among these distances:
679 149 0.15
680 9 0.01
681 50 0.05
682 1 0.00
683 1 0.00
684 2 0.00
685 1 0.00
687 1 0.00
688 1 0.00
689 1 0.00
691 8 0.01
692 367 0.38
693 13 0.01
694 4 0.00
695 3 0.00
696 1 0.00
699 2 0.00
702 15 0.02
703 342 0.35
704 6 0.01
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (680 bp):
TTGATTATTATCATGATGTTTTAAATGATTATTTTGATTTTAATACTCTTAGGTTCATGGACGTT
GTTATTAGTTTATTGGTTTGCTTGGTTGAAATTATTCATATGCTATGGACTTCAAATATGGAAAT
TTTGATGTTGAATATTGAAGTTATGGATGCATGTTGAAGTGGTATGTGATTGAGTATGTGGAATG
CCCTATTTTGCTTGAATTTTTGCAGAATTATACAGTAGTATTGATAATAGAGGCATATGTATCGA
TACTTTTGAGTTGAAACGAATGTGTAGGAAACAATTGCTCATTTTGGTATCGATACCAATTCTCG
AGTATCGATACTCGGGGTAAAATTATAGATACTTTTGAATTGTATCGATAAATTGCTGGGTTTTA
GATTTTGAAGAAAAACAGAATGTTAAAAATGTACCAATTTTCAAACAGTATCGATACCTATTTAG
ATGTTCTCATATAATGTATGATATCATGTTTATTTGGTATTTTTTCTCTCAATCATTCACTGAGC
TTGTTTAAGCTCACACACTCTTTTCTAAACTTTTGCAGATAGTTAGTGTTTCCGGTATGGGCGGT
GTGAAATTCAAGGAAACTGATCCAAGTTAGGCTTAGTGTTTAAGTAGGTGATATTATTACTATTA
TTTTTGAACTGTGCGAATAAGACAATATAG
Found at i:84591390 original size:20 final size:19
Alignment explanation
Indices: 84591338--84591387 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 19
84591328 TTCCTTATAA
* *
84591338 ATTTTTA-TAATTCCTCAT
1 ATTTTTAGTACTTCTTCAT
*
84591356 ATTTTTTGTACTTCTTCAT
1 ATTTTTAGTACTTCTTCAT
*
84591375 GTTTTTAGTACTT
1 ATTTTTAGTACTT
84591388 TCTACGATTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
18 6 0.23
19 20 0.77
ACGTcount: A:0.20, C:0.14, G:0.06, T:0.60
Consensus pattern (19 bp):
ATTTTTAGTACTTCTTCAT
Found at i:84591399 original size:20 final size:17
Alignment explanation
Indices: 84591356--84591408 Score: 52
Period size: 20 Copynumber: 2.8 Consensus size: 17
84591346 AATTCCTCAT
*
84591356 ATTTTTTGTACTTCTTC
1 ATTTTTTGTACTTCTAC
84591373 ATGTTTTTAGTACTTTCTAC
1 AT-TTTTT-GTAC-TTCTAC
84591393 GATTTTTTGTCACTTC
1 -ATTTTTTGT-ACTTC
84591409 CTCGTAAATT
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
17 2 0.07
18 5 0.17
19 9 0.30
20 12 0.40
21 2 0.07
ACGTcount: A:0.15, C:0.17, G:0.09, T:0.58
Consensus pattern (17 bp):
ATTTTTTGTACTTCTAC
Found at i:84591443 original size:19 final size:18
Alignment explanation
Indices: 84591418--84591484 Score: 62
Period size: 19 Copynumber: 3.5 Consensus size: 18
84591408 CCTCGTAAAT
84591418 TTTTTTATTTCCTCATAATA
1 TTTTTTATTTCCTCAT-A-A
**
84591438 TTTTTATATTTCCTCATTT
1 TTTTT-TATTTCCTCATAA
* *
84591457 TTTTGTTATTCCCTCCTAA
1 TTTT-TTATTTCCTCATAA
84591476 TTTTTTATT
1 TTTTTTATT
84591485 CTTCCTCTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
18 5 0.13
19 17 0.44
20 6 0.15
21 11 0.28
ACGTcount: A:0.18, C:0.16, G:0.01, T:0.64
Consensus pattern (18 bp):
TTTTTTATTTCCTCATAA
Found at i:84591465 original size:21 final size:21
Alignment explanation
Indices: 84591406--84591454 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
84591396 TTTTTGTCAC
* *
84591406 TTCCTCGTAA-ATTTTTTTAT
1 TTCCTCATAATATTTTTATAT
84591426 TTCCTCATAATATTTTTATAT
1 TTCCTCATAATATTTTTATAT
84591447 TTCCTCAT
1 TTCCTCAT
84591455 TTTTTTGTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 9 0.35
21 17 0.65
ACGTcount: A:0.22, C:0.18, G:0.02, T:0.57
Consensus pattern (21 bp):
TTCCTCATAATATTTTTATAT
Found at i:84591481 original size:39 final size:39
Alignment explanation
Indices: 84591417--84591491 Score: 100
Period size: 39 Copynumber: 1.9 Consensus size: 39
84591407 TCCTCGTAAA
*
84591417 TTTTTTTATTTCCTCATAATATTTTTATAT-TTCCTCATT
1 TTTTTTTATTCCCTCATAATATTTTTAT-TCTTCCTCATT
*
84591456 TTTTTGTTATTCCCTCCTAAT-TTTTTATTCTTCCTC
1 TTTTT-TTATTCCCTCATAATATTTTTATTCTTCCTC
84591492 TTTGTGTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
38 1 0.03
39 18 0.56
40 13 0.41
ACGTcount: A:0.16, C:0.20, G:0.01, T:0.63
Consensus pattern (39 bp):
TTTTTTTATTCCCTCATAATATTTTTATTCTTCCTCATT
Found at i:84592187 original size:21 final size:19
Alignment explanation
Indices: 84592163--84592202 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
84592153 AATTTTATTA
*
84592163 ATATGCAAAAATATTTATTTT
1 ATAT-CAAAAA-ATTGATTTT
84592184 ATATCAAAAAATTGATTTT
1 ATATCAAAAAATTGATTTT
84592203 TCTAGTCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 6 0.33
21 4 0.22
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (19 bp):
ATATCAAAAAATTGATTTT
Found at i:84592223 original size:19 final size:19
Alignment explanation
Indices: 84592168--84592223 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 19
84592158 TATTAATATG
*
84592168 CAAAAATATTTATTTTATAT
1 CAAAAA-ATTTATTTTCTAT
*
84592188 CAAAAAATTGATTTTTCTAGT
1 CAAAAAATTTA-TTTTCTA-T
84592209 C-AAAAATTTATTTTC
1 CAAAAAATTTATTTTC
84592224 AAATCATATT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
19 9 0.29
20 20 0.65
21 2 0.06
ACGTcount: A:0.41, C:0.09, G:0.04, T:0.46
Consensus pattern (19 bp):
CAAAAAATTTATTTTCTAT
Found at i:84592284 original size:10 final size:10
Alignment explanation
Indices: 84592253--84592300 Score: 53
Period size: 10 Copynumber: 4.8 Consensus size: 10
84592243 GATCGCATAA
*
84592253 AAAAATTATG
1 AAAAATTATT
84592263 AGAAAA-TATT
1 A-AAAATTATT
84592273 AAAAATTATT
1 AAAAATTATT
*
84592283 AAAAATTACT
1 AAAAATTATT
*
84592293 AATAATTA
1 AAAAATTA
84592301 CGGGGATGCA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
9 4 0.12
10 25 0.76
11 4 0.12
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.33
Consensus pattern (10 bp):
AAAAATTATT
Found at i:84598776 original size:24 final size:24
Alignment explanation
Indices: 84598741--84598788 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
84598731 GAAAACAGAC
*
84598741 GGTTATCTAAGATAAATTTTATGG
1 GGTTATCGAAGATAAATTTTATGG
84598765 GGTTATCGAAGATAAATTTTATGG
1 GGTTATCGAAGATAAATTTTATGG
84598789 AAGAAATTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.33, C:0.04, G:0.23, T:0.40
Consensus pattern (24 bp):
GGTTATCGAAGATAAATTTTATGG
Found at i:84599200 original size:31 final size:30
Alignment explanation
Indices: 84599138--84599205 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 30
84599128 TATATATTTT
**
84599138 AAAAATATTTTAAAATTAAAAAAATTTTAA
1 AAAAATATTTTAAAATTAAAAAAATAATAA
84599168 AAAAAGTATTTTAAAATTTAAAAAAA-AATAA
1 AAAAA-TATTTTAAAA-TTAAAAAAATAATAA
84599199 AAAAATA
1 AAAAATA
84599206 AAAAAAATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
30 7 0.21
31 18 0.53
32 9 0.26
ACGTcount: A:0.68, C:0.00, G:0.01, T:0.31
Consensus pattern (30 bp):
AAAAATATTTTAAAATTAAAAAAATAATAA
Found at i:84601693 original size:21 final size:21
Alignment explanation
Indices: 84601667--84601816 Score: 77
Period size: 21 Copynumber: 7.1 Consensus size: 21
84601657 CCGAAGGCTG
*
84601667 AACAGAAGCTCATGAGAGCTA
1 AACAGAAGCTCATAAGAGCTA
* * * * * *
84601688 AACAGAAACCCGTAAGGGTTG
1 AACAGAAGCTCATAAGAGCTA
* ** *
84601709 AATAGAAGCTTGTAAGAGCTG
1 AACAGAAGCTCATAAGAGCTA
* * * * *
84601730 AACGGAAACCCATAAGGGTTA
1 AACAGAAGCTCATAAGAGCTA
*
84601751 AACAGAAGCTCA-ATAGAGCTG
1 AACAGAAGCTCATA-AGAGCTA
* * * *
84601772 AACGGAAACTCATATGAGTTA
1 AACAGAAGCTCATAAGAGCTA
* *
84601793 AACAGAAGCTCGTGAGAGCTA
1 AACAGAAGCTCATAAGAGCTA
84601814 AAC
1 AAC
84601817 GGAAAGTAAA
Statistics
Matches: 88, Mismatches: 39, Indels: 4
0.67 0.30 0.03
Matches are distributed among these distances:
20 1 0.01
21 86 0.98
22 1 0.01
ACGTcount: A:0.41, C:0.17, G:0.25, T:0.17
Consensus pattern (21 bp):
AACAGAAGCTCATAAGAGCTA
Found at i:84601717 original size:42 final size:42
Alignment explanation
Indices: 84601667--84601821 Score: 177
Period size: 42 Copynumber: 3.7 Consensus size: 42
84601657 CCGAAGGCTG
* * *
84601667 AACAGAAGCTCATGAGAGCTAAACAGAAACCCGTAAGGGTTG
1 AACAGAAGCTCATGAGAGCTAAACGGAAACCCATAAGGGTTA
* ** * *
84601709 AATAGAAGCTTGTAAGAGCTGAACGGAAACCCATAAGGGTTA
1 AACAGAAGCTCATGAGAGCTAAACGGAAACCCATAAGGGTTA
* * * *
84601751 AACAGAAGCTCAAT-AGAGCTGAACGGAAACTCATATGAGTTA
1 AACAGAAGCTC-ATGAGAGCTAAACGGAAACCCATAAGGGTTA
*
84601793 AACAGAAGCTCGTGAGAGCTAAACGGAAA
1 AACAGAAGCTCATGAGAGCTAAACGGAAA
84601822 GTAAACATGA
Statistics
Matches: 95, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
41 1 0.01
42 93 0.98
43 1 0.01
ACGTcount: A:0.42, C:0.17, G:0.25, T:0.16
Consensus pattern (42 bp):
AACAGAAGCTCATGAGAGCTAAACGGAAACCCATAAGGGTTA
Found at i:84601811 original size:84 final size:84
Alignment explanation
Indices: 84601667--84601821 Score: 195
Period size: 84 Copynumber: 1.8 Consensus size: 84
84601657 CCGAAGGCTG
* * * * * *
84601667 AACAGAAGCTCATGAGAGCTAAACAGAAACCCGTAAGGGTTGAATAGAAGCTTGTAAGAGCTGAA
1 AACAGAAGCTCATGAGAGCTAAACAGAAACCCATAAGAGTTAAACAGAAGCTCGTAAGAGCTAAA
84601732 CGGAAACCCATAAGGGTTA
66 CGGAAACCCATAAGGGTTA
* * * * *
84601751 AACAGAAGCTCAAT-AGAGCTGAACGGAAACTCATATGAGTTAAACAGAAGCTCGTGAGAGCTAA
1 AACAGAAGCTC-ATGAGAGCTAAACAGAAACCCATAAGAGTTAAACAGAAGCTCGTAAGAGCTAA
84601815 ACGGAAA
65 ACGGAAA
84601822 GTAAACATGA
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
84 57 0.97
85 2 0.03
ACGTcount: A:0.42, C:0.17, G:0.25, T:0.16
Consensus pattern (84 bp):
AACAGAAGCTCATGAGAGCTAAACAGAAACCCATAAGAGTTAAACAGAAGCTCGTAAGAGCTAAA
CGGAAACCCATAAGGGTTA
Found at i:84603819 original size:15 final size:15
Alignment explanation
Indices: 84603799--84603828 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
84603789 TATTTAGAAA
84603799 AACATAGCAAAATAT
1 AACATAGCAAAATAT
84603814 AACATAGCAAAATAT
1 AACATAGCAAAATAT
84603829 CTTGTGTAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.60, C:0.13, G:0.07, T:0.20
Consensus pattern (15 bp):
AACATAGCAAAATAT
Found at i:84605590 original size:34 final size:35
Alignment explanation
Indices: 84605546--84605612 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
84605536 GAGTAAAATA
* *
84605546 TTTTCCGTAAAATGATTTA-TGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGAAAAATATTTTAC
*
84605580 TTTTCTGTAAAATGATTTACTGAAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGAAAAATATTTT
84605613 TTGGTGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 18 0.62
35 11 0.38
ACGTcount: A:0.34, C:0.07, G:0.12, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGAAAAATATTTTAC
Found at i:84608062 original size:25 final size:24
Alignment explanation
Indices: 84608011--84608064 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
84608001 GTCATTAGGG
* * * *
84608011 TTACCGATTCCAGCTCTTATGAGC
1 TTACCGATACCAACTCGTATGAAC
84608035 TTACCGATACTCAACTCGTATGAAC
1 TTACCGATAC-CAACTCGTATGAAC
84608060 TTACC
1 TTACC
84608065 ATTATTCAGC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
24 9 0.36
25 16 0.64
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.31
Consensus pattern (24 bp):
TTACCGATACCAACTCGTATGAAC
Found at i:84608084 original size:25 final size:26
Alignment explanation
Indices: 84608056--84608114 Score: 70
Period size: 25 Copynumber: 2.3 Consensus size: 26
84608046 CAACTCGTAT
84608056 GAACTTACCA-TTATTCAGCTT-GAA
1 GAACTTACCAGTTATTCAGCTTAGAA
*
84608080 GGAACTTA-TAGTTATTCAGCTTAGAA
1 -GAACTTACCAGTTATTCAGCTTAGAA
*
84608106 GAGCTTACC
1 GAACTTACC
84608115 GTTTATAGCT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
24 1 0.04
25 24 0.86
26 3 0.11
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (26 bp):
GAACTTACCAGTTATTCAGCTTAGAA
Found at i:84613422 original size:17 final size:18
Alignment explanation
Indices: 84613396--84613433 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
84613386 TAGTTATGCT
*
84613396 AAAATGTTTTG-AGTAGA
1 AAAATGTTTTGTAGCAGA
*
84613413 AAAATTTTTTGTAGCAGA
1 AAAATGTTTTGTAGCAGA
84613431 AAA
1 AAA
84613434 TTTGTTGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.45, C:0.03, G:0.18, T:0.34
Consensus pattern (18 bp):
AAAATGTTTTGTAGCAGA
Found at i:84619155 original size:40 final size:39
Alignment explanation
Indices: 84619084--84619161 Score: 106
Period size: 40 Copynumber: 2.0 Consensus size: 39
84619074 TATTTTAGTT
84619084 TGTGTCTTTAATTATGTCTTAGTTTGAACATCATTAATA
1 TGTGTCTTTAATTATGTCTTAGTTTGAACATCATTAATA
*
84619123 TGTGT-TTTAATTACTTGTCTTAATTTTG-ACATCATTAAT
1 TGTGTCTTTAATTA--TGTCTT-AGTTTGAACATCATTAAT
84619162 GTTTGTCTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
38 8 0.23
39 5 0.14
40 17 0.49
41 5 0.14
ACGTcount: A:0.27, C:0.10, G:0.12, T:0.51
Consensus pattern (39 bp):
TGTGTCTTTAATTATGTCTTAGTTTGAACATCATTAATA
Found at i:84621718 original size:18 final size:17
Alignment explanation
Indices: 84621692--84621730 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
84621682 ATTTTCCTTC
84621692 CACATTC-AATATTAATT
1 CACATTCAAATA-TAATT
84621709 CACATATCAAATATAATT
1 CACAT-TCAAATATAATT
84621727 CACA
1 CACA
84621731 ATTTATAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 11 0.55
19 4 0.20
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (17 bp):
CACATTCAAATATAATT
Found at i:84623498 original size:31 final size:31
Alignment explanation
Indices: 84623460--84623519 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
84623450 GGGATGCTCG
84623460 TAAACTATCCTTTGCTGGAATGCTAACTTCT
1 TAAACTATCCTTTGCTGGAATGCTAACTTCT
84623491 TAAACTATCCTTTGCTGGAATGCTAACTT
1 TAAACTATCCTTTGCTGGAATGCTAACTT
84623520 TAGTGAAGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.22, G:0.13, T:0.38
Consensus pattern (31 bp):
TAAACTATCCTTTGCTGGAATGCTAACTTCT
Found at i:84626058 original size:14 final size:15
Alignment explanation
Indices: 84626037--84626072 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
84626027 CTTAGATGTG
*
84626037 ATTTTTTAAATAATT
1 ATTTTTAAAATAATT
84626052 ATTTTTAAAAATAATT
1 ATTTTT-AAAATAATT
84626068 ATTTT
1 ATTTT
84626073 AAGGATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
ATTTTTAAAATAATT
Found at i:84628469 original size:19 final size:19
Alignment explanation
Indices: 84628432--84628468 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
84628422 TTTCAATTTT
84628432 TAAAAAAATAAAAGTAAAA
1 TAAAAAAATAAAAGTAAAA
*
84628451 TAAATAAATAAAA-TAAAA
1 TAAAAAAATAAAAGTAAAA
84628469 AACACTCAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (19 bp):
TAAAAAAATAAAAGTAAAA
Found at i:84629626 original size:20 final size:20
Alignment explanation
Indices: 84629601--84629643 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
84629591 ATTAGAATGT
* *
84629601 AAAAATTAAATTAAAAACAA
1 AAAAATAAAAATAAAAACAA
*
84629621 AAAAATAAAAATAAAAATAA
1 AAAAATAAAAATAAAAACAA
84629641 AAA
1 AAA
84629644 TAAAAAGGCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.16
Consensus pattern (20 bp):
AAAAATAAAAATAAAAACAA
Found at i:84629629 original size:26 final size:26
Alignment explanation
Indices: 84629600--84629649 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
84629590 AATTAGAATG
* *
84629600 TAAAAATTAAATTAAAAACAAAAAAA
1 TAAAAATAAAAATAAAAACAAAAAAA
*
84629626 TAAAAATAAAAATAAAAATAAAAA
1 TAAAAATAAAAATAAAAACAAAAA
84629650 GGCTAAATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.18
Consensus pattern (26 bp):
TAAAAATAAAAATAAAAACAAAAAAA
Found at i:84629630 original size:6 final size:6
Alignment explanation
Indices: 84629621--84629649 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
84629611 TTAAAAACAA
84629621 AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
84629650 GGCTAAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:84635927 original size:76 final size:77
Alignment explanation
Indices: 84635830--84635981 Score: 234
Period size: 76 Copynumber: 2.0 Consensus size: 77
84635820 CATTTTGGTA
* *
84635830 TTTAATAATATTTTTTTGGATTATTGTGGTAAAAGAACTACATTTTACAAATGTTAAATATATGT
1 TTTAATAATATTTTCTTGGATTATTGTGGTAAAAGAACTACATTTTACAAATGTTAAAGATATGT
84635895 TACGTAATAAAT
66 TACGTAATAAAT
* * * *
84635907 TTTAATTA-ATTTTCTTGGATTATTGTGGTAAAAGAATTACTTTTTACAAATGTTTAAGATATGT
1 TTTAATAATATTTTCTTGGATTATTGTGGTAAAAGAACTACATTTTACAAATGTTAAAGATATGT
*
84635971 TATGTAATAAA
66 TACGTAATAAA
84635982 AAACTTATTA
Statistics
Matches: 68, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
76 61 0.90
77 7 0.10
ACGTcount: A:0.38, C:0.05, G:0.12, T:0.45
Consensus pattern (77 bp):
TTTAATAATATTTTCTTGGATTATTGTGGTAAAAGAACTACATTTTACAAATGTTAAAGATATGT
TACGTAATAAAT
Done.