Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 277 of 313
Found at i:84638729 original size:28 final size:30
Alignment explanation
Indices: 84638695--84638753 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
84638685 TTTAAAGCAC
* *
84638695 AAAAGTAT-ATATACAT-AAATAATTAAAA
1 AAAAGTATCATAAAAATAAAATAATTAAAA
*
84638723 AAAAGTATCATAAAAATAAAATTATTAAAA
1 AAAAGTATCATAAAAATAAAATAATTAAAA
84638753 A
1 A
84638754 TATTTAGATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 8 0.31
29 6 0.23
30 12 0.46
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.27
Consensus pattern (30 bp):
AAAAGTATCATAAAAATAAAATAATTAAAA
Found at i:84639575 original size:24 final size:25
Alignment explanation
Indices: 84639539--84639586 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
84639529 CTTTCGAGTT
*
84639539 TTTTCTTTTAATTTTCTCTTCAATA
1 TTTTCTTTTAATTTTCTATTCAATA
*
84639564 TTTT-TTTTAATTTTTTATTCAAT
1 TTTTCTTTTAATTTTCTATTCAAT
84639587 CTGTAAAAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.21, C:0.10, G:0.00, T:0.69
Consensus pattern (25 bp):
TTTTCTTTTAATTTTCTATTCAATA
Found at i:84640491 original size:45 final size:45
Alignment explanation
Indices: 84640442--84640672 Score: 123
Period size: 44 Copynumber: 5.2 Consensus size: 45
84640432 GTCTTCGATT
* *
84640442 TGCTCCACTATCGAGGCAAGAAGGCAAGACCTGCTATCTTCAACC
1 TGCTCCACTATCGAAGCAGGAAGGCAAGACCTGCTATCTTCAACC
* * * * * * * *
84640487 TGCTCCACTA-C-AACCGAGGGAGACAAGGCTTG-TGTCTTCGATC
1 TGCTCCACTATCGAAGC-AGGAAGGCAAGACCTGCTATCTTCAACC
* * * * *
84640530 TGCTTCACTGTCGATGCAGGAAGGCAAGATCTGCTATCTTCAACT
1 TGCTCCACTATCGAAGCAGGAAGGCAAGACCTGCTATCTTCAACC
* * * * * ** *
84640575 TGCTCCACTA-C-AACCGAGGGAGGCAAGGCTTG-TGTCTTTGATC
1 TGCTCCACTATCGAAGC-AGGAAGGCAAGACCTGCTATCTTCAACC
* * * * * * * *
84640618 TGCTTCGCTGTCGATGTAGAAAGGCAAGATCTGTTATCTTCAACC
1 TGCTCCACTATCGAAGCAGGAAGGCAAGACCTGCTATCTTCAACC
84640663 TGCTCCACTA
1 TGCTCCACTA
84640673 CAACCGAGGG
Statistics
Matches: 124, Mismatches: 54, Indels: 16
0.64 0.28 0.08
Matches are distributed among these distances:
43 33 0.27
44 49 0.40
45 42 0.34
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (45 bp):
TGCTCCACTATCGAAGCAGGAAGGCAAGACCTGCTATCTTCAACC
Found at i:84640777 original size:88 final size:88
Alignment explanation
Indices: 84640461--84640773 Score: 536
Period size: 88 Copynumber: 3.6 Consensus size: 88
84640451 ATCGAGGCAA
* *
84640461 GAAGGCAAGACCTGCTATCTTCAACCTGCTCCACTACAACCGAGGGAGACAAGGCTTGTGTCTTC
1 GAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCGAGGGAGACAAGGCTTGTGTCTTT
* *
84640526 GATCTGCTTCACTGTCGATGCAG
66 GATCTGCTTCGCTGTCGATGTAG
* *
84640549 GAAGGCAAGATCTGCTATCTTCAACTTGCTCCACTACAACCGAGGGAGGCAAGGCTTGTGTCTTT
1 GAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCGAGGGAGACAAGGCTTGTGTCTTT
84640614 GATCTGCTTCGCTGTCGATGTAG
66 GATCTGCTTCGCTGTCGATGTAG
* * *
84640637 AAAGGCAAGATCTGTTATCTTCAACCTGCTCCACTACAACCGAGGGAGATAAGGCTTGTGTCTTT
1 GAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCGAGGGAGACAAGGCTTGTGTCTTT
84640702 GATCTGCTTCGCTGTCGATGTAG
66 GATCTGCTTCGCTGTCGATGTAG
*
84640725 GAAGGCAAGATCTGCTATCTTCAACCTACTCCACTACAACCGAGGGAGA
1 GAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCGAGGGAGA
84640774 TAAGATCTGT
Statistics
Matches: 211, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
88 211 1.00
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.26
Consensus pattern (88 bp):
GAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCGAGGGAGACAAGGCTTGTGTCTTT
GATCTGCTTCGCTGTCGATGTAG
Found at i:84641218 original size:44 final size:44
Alignment explanation
Indices: 84640792--84641217 Score: 476
Period size: 44 Copynumber: 9.7 Consensus size: 44
84640782 GTAATTTTCA
* * * * * *
84640792 ACCTACTCCACAGCTGCTCAGGGAGCTAGGACCTACAATTTTCT
1 ACCTATTCCACTGCTGGTCAGGGAGCTAGGACTTACAATCTTCC
* * * * *
84640836 AACTATTCCATTGCTGGTCAAGGAGCTAGGATTTACAGTCTTCC
1 ACCTATTCCACTGCTGGTCAGGGAGCTAGGACTTACAATCTTCC
* * *
84640880 ACCTATTCCACTGCTGGTCAAGGG-GATAGGATTTACAATCTTCT
1 ACCTATTCCACTGCTGGTC-AGGGAGCTAGGACTTACAATCTTCC
* * * * *
84640924 GCCTATTCCAATGCTGTTCAGGGAGCTAGGACTTTCAGTCTTCC
1 ACCTATTCCACTGCTGGTCAGGGAGCTAGGACTTACAATCTTCC
* * *
84640968 ACCTATTCCAATGCTGGTCAGGGAGCTAGGATTTATAATCTTCC
1 ACCTATTCCACTGCTGGTCAGGGAGCTAGGACTTACAATCTTCC
* * * * *
84641012 GCCTATTCCACTACTGTTCAGGGAGCTAGGGCTTACAATCTTCT
1 ACCTATTCCACTGCTGGTCAGGGAGCTAGGACTTACAATCTTCC
* *
84641056 ACTTATTCCACTGCTGGTCAGGGAGCTAGGATTTACAATCTTCC
1 ACCTATTCCACTGCTGGTCAGGGAGCTAGGACTTACAATCTTCC
* * * * * *
84641100 ACATATTCCACAGTTGGTCAGGGAACTAGGGCTTACAGTCTTCC
1 ACCTATTCCACTGCTGGTCAGGGAGCTAGGACTTACAATCTTCC
* * * *
84641144 ACCTATTCCACTACTGGTCAGGGAACTAGGGCTTACAGTCTTCC
1 ACCTATTCCACTGCTGGTCAGGGAGCTAGGACTTACAATCTTCC
*
84641188 ACCTATTCCACTGCTGGTCAGGGAACTAGG
1 ACCTATTCCACTGCTGGTCAGGGAGCTAGG
84641218 GTTACAGTTG
Statistics
Matches: 322, Mismatches: 58, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
43 4 0.01
44 315 0.98
45 3 0.01
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (44 bp):
ACCTATTCCACTGCTGGTCAGGGAGCTAGGACTTACAATCTTCC
Found at i:84646271 original size:20 final size:21
Alignment explanation
Indices: 84646248--84646297 Score: 77
Period size: 20 Copynumber: 2.4 Consensus size: 21
84646238 CCTTAGTCTC
84646248 TCCATTTTT-ACTTTTCA-TTT
1 TCCATTTTTCA-TTTTCATTTT
84646268 TCCATTTTTCATTTTCATTTT
1 TCCATTTTTCATTTTCATTTT
84646289 TCCATTTTT
1 TCCATTTTT
84646298 TTACTCAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.14, C:0.20, G:0.00, T:0.66
Consensus pattern (21 bp):
TCCATTTTTCATTTTCATTTT
Found at i:84646294 original size:8 final size:7
Alignment explanation
Indices: 84646250--84646297 Score: 55
Period size: 7 Copynumber: 7.0 Consensus size: 7
84646240 TTAGTCTCTC
84646250 CATTTTT
1 CATTTTT
*
84646257 -ACTTTT
1 CATTTTT
*
84646263 CATTTTC
1 CATTTTT
84646270 CATTTTT
1 CATTTTT
84646277 CA-TTTT
1 CATTTTT
84646283 CATTTTT
1 CATTTTT
84646290 CCATTTTT
1 -CATTTTT
84646298 TTACTCAAAG
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
6 11 0.32
7 16 0.47
8 7 0.21
ACGTcount: A:0.15, C:0.19, G:0.00, T:0.67
Consensus pattern (7 bp):
CATTTTT
Found at i:84647180 original size:20 final size:20
Alignment explanation
Indices: 84647141--84647180 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
84647131 CCTTGGCCTC
* *
84647141 TCCTTTTCTTTTTCCTTTTT
1 TCCTTATCTTTTTCCATTTT
*
84647161 TCCTTATCTTTTTTCATTTT
1 TCCTTATCTTTTTCCATTTT
84647181 CATTTTCATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.05, C:0.23, G:0.00, T:0.72
Consensus pattern (20 bp):
TCCTTATCTTTTTCCATTTT
Found at i:84647207 original size:6 final size:6
Alignment explanation
Indices: 84647171--84647244 Score: 53
Period size: 6 Copynumber: 12.7 Consensus size: 6
84647161 TCCTTATCTT
* * * * **
84647171 TTTTCA TTTTCA TTTTCA TTTTGA CTTTGA TTTTGA TTTTTC TTTT--
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA
* **
84647217 TCTTCT TTTTGA TTTTGA TTTTGA TTTT
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTT
84647245 TTTTTGAATT
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
4 3 0.05
6 54 0.95
ACGTcount: A:0.12, C:0.09, G:0.08, T:0.70
Consensus pattern (6 bp):
TTTTGA
Found at i:84652623 original size:24 final size:26
Alignment explanation
Indices: 84652585--84652633 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 26
84652575 CTTTCGAGTT
*
84652585 TTTTTCTTTTAATTTTCTCTTCAATG
1 TTTTTCTTTTAATTTTCTATTCAATG
*
84652611 TTTTT-TTTT-ATTTTTTATTCAAT
1 TTTTTCTTTTAATTTTCTATTCAAT
84652634 CTGTAAAAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 12 0.57
25 4 0.19
26 5 0.24
ACGTcount: A:0.16, C:0.10, G:0.02, T:0.71
Consensus pattern (26 bp):
TTTTTCTTTTAATTTTCTATTCAATG
Found at i:84653937 original size:46 final size:46
Alignment explanation
Indices: 84653887--84653985 Score: 162
Period size: 46 Copynumber: 2.2 Consensus size: 46
84653877 CAAGATTGTG
*
84653887 TTAATTTTGTTTGAATTAATTTATTAAACTATAACAAATGCTTGAC
1 TTAATTTTGTTTGAATTAATTTATTAAACTATAACAAAGGCTTGAC
** *
84653933 TTAATTTTGTTTTTATTAATTTATTAAACTATCACAAAGGCTTGAC
1 TTAATTTTGTTTGAATTAATTTATTAAACTATAACAAAGGCTTGAC
84653979 TTAATTT
1 TTAATTT
84653986 AAAATTTTGA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.34, C:0.09, G:0.08, T:0.48
Consensus pattern (46 bp):
TTAATTTTGTTTGAATTAATTTATTAAACTATAACAAAGGCTTGAC
Found at i:84656054 original size:45 final size:45
Alignment explanation
Indices: 84655930--84656060 Score: 199
Period size: 45 Copynumber: 2.9 Consensus size: 45
84655920 CTCGGTGCAT
*
84655930 TCAGCACATAGCAACCACCTTATTAATCAATGATATCCGGTGGAA
1 TCAGCACATAGCAACCACCTTATTAATCAATGATGTCCGGTGGAA
* *
84655975 TCAACACATAGCAACCACCTTATTAATCAATGATGTCTGGTGGAA
1 TCAGCACATAGCAACCACCTTATTAATCAATGATGTCCGGTGGAA
* * * *
84656020 TCAGCACATAGCAAACACCATACTAATCAATGATGTTCGGT
1 TCAGCACATAGCAACCACCTTATTAATCAATGATGTCCGGT
84656061 TCACATAGTA
Statistics
Matches: 77, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.15, T:0.25
Consensus pattern (45 bp):
TCAGCACATAGCAACCACCTTATTAATCAATGATGTCCGGTGGAA
Found at i:84656142 original size:51 final size:51
Alignment explanation
Indices: 84656057--84656252 Score: 225
Period size: 51 Copynumber: 3.9 Consensus size: 51
84656047 CAATGATGTT
* * * *
84656057 CGGTTCACATAGTAGCCTGCATATAGTACTACACATGTGACCATTACCATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATTACCATC
* * ** *
84656108 CGATACACGTAGTAGCCTGCACATAGTACTACACACGTGATCAAAACTATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATTACCATC
* * * * * *
84656159 CGGTACGCATAGTAGCATGCACATAGTACTACACATGCGACC--TATCATTC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATTACCA-TC
*
84656209 CGGTACACGTAGTAGTCTGCACATAGTACTACACACGTGACCAT
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAT
84656253 CACTTTCACT
Statistics
Matches: 117, Mismatches: 25, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
49 2 0.02
50 38 0.32
51 77 0.66
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (51 bp):
CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATTACCATC
Found at i:84656241 original size:101 final size:101
Alignment explanation
Indices: 84656064--84656248 Score: 291
Period size: 101 Copynumber: 1.8 Consensus size: 101
84656054 GTTCGGTTCA
* * *
84656064 CATAGTAGCCTGCATATAGTACTACACATGTGACCATTACCATCCGATACACGTAGTAGCCTGCA
1 CATAGTAGCATGCACATAGTACTACACATGCGACCA-TACCATCCGATACACGTAGTAGCCTGCA
84656129 CATAGTACTACACACGTGATCAAAACTATCCGGTACG
65 CATAGTACTACACACGTGATCAAAACTATCCGGTACG
* * *
84656166 CATAGTAGCATGCACATAGTACTACACATGCGACC-TATCATTCCGGTACACGTAGTAGTCTGCA
1 CATAGTAGCATGCACATAGTACTACACATGCGACCATACCA-TCCGATACACGTAGTAGCCTGCA
84656230 CATAGTACTACACACGTGA
65 CATAGTACTACACACGTGA
84656249 CCATCACTTT
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
100 4 0.05
101 40 0.53
102 32 0.42
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (101 bp):
CATAGTAGCATGCACATAGTACTACACATGCGACCATACCATCCGATACACGTAGTAGCCTGCAC
ATAGTACTACACACGTGATCAAAACTATCCGGTACG
Found at i:84661620 original size:17 final size:16
Alignment explanation
Indices: 84661570--84661627 Score: 53
Period size: 17 Copynumber: 3.2 Consensus size: 16
84661560 GGGTGAGAAG
84661570 TAAAAGTTTAGGCGGAAAA
1 TAAAAGTTTA-G-GG-AAA
*
84661589 TAAAAAGTTTTGGGAAA
1 T-AAAAGTTTAGGGAAA
84661606 TAAAAGTTTGAGGGAAA
1 TAAAAGTTT-AGGGAAA
84661623 GTAAA
1 -TAAA
84661628 TAGGGGGAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
16 8 0.24
17 10 0.29
18 6 0.18
19 2 0.06
20 8 0.24
ACGTcount: A:0.48, C:0.02, G:0.26, T:0.24
Consensus pattern (16 bp):
TAAAAGTTTAGGGAAA
Found at i:84661745 original size:30 final size:31
Alignment explanation
Indices: 84661706--84661765 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
84661696 GGAAGTGGGA
*
84661706 TGGGAAGGGAATAAAAGTTTTAGGGGAAAAG
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
* *
84661737 TGGG-AGGGAGTAAAAATTTTGGGGGAAAA
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAA
84661766 TAAAAGGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.40, C:0.00, G:0.40, T:0.20
Consensus pattern (31 bp):
TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
Found at i:84662075 original size:9 final size:9
Alignment explanation
Indices: 84662058--84662088 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
84662048 TCGAGTTGAT
84662058 TCGAATAAC
1 TCGAATAAC
*
84662067 TCGATTAAC
1 TCGAATAAC
84662076 TCGAATAAC
1 TCGAATAAC
84662085 TCGA
1 TCGA
84662089 TTCATTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:84688867 original size:3 final size:3
Alignment explanation
Indices: 84688859--84688904 Score: 65
Period size: 3 Copynumber: 15.3 Consensus size: 3
84688849 TCATGATTCT
* * *
84688859 TTG TTG TTG TTG TTG TTT TTG TTG TTG TTG TTG TTA TAG TTG TTG T
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG T
84688905 GTAGCTTATG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.04, C:0.00, G:0.28, T:0.67
Consensus pattern (3 bp):
TTG
Found at i:84688881 original size:18 final size:18
Alignment explanation
Indices: 84688858--84688904 Score: 76
Period size: 18 Copynumber: 2.6 Consensus size: 18
84688848 TTCATGATTC
84688858 TTTGTTGTTGTTGTTGTT
1 TTTGTTGTTGTTGTTGTT
84688876 TTTGTTGTTGTTGTTGTT
1 TTTGTTGTTGTTGTTGTT
* *
84688894 ATAGTTGTTGT
1 TTTGTTGTTGT
84688905 GTAGCTTATG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.04, C:0.00, G:0.28, T:0.68
Consensus pattern (18 bp):
TTTGTTGTTGTTGTTGTT
Found at i:84689163 original size:45 final size:44
Alignment explanation
Indices: 84689098--84689182 Score: 116
Period size: 45 Copynumber: 1.9 Consensus size: 44
84689088 TTTATAATAA
* * * *
84689098 ATTAAATAGTATTTATAATAAATTATTTATATTTAATTTTACTTG
1 ATTAAATAATATTTACAATAAAATATTTATACTT-ATTTTACTTG
*
84689143 ATTATATAATATTTACAATAAAATATTTATACTTATTTTA
1 ATTAAATAATATTTACAATAAAATATTTATACTTATTTTA
84689183 ACTAAATAAC
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
44 6 0.17
45 29 0.83
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.52
Consensus pattern (44 bp):
ATTAAATAATATTTACAATAAAATATTTATACTTATTTTACTTG
Found at i:84689200 original size:45 final size:45
Alignment explanation
Indices: 84689107--84689221 Score: 124
Period size: 45 Copynumber: 2.6 Consensus size: 45
84689097 AATTAAATAG
* ** * *
84689107 TATTTATAATAAATTATTTATATTTAATTTTACTTGATTATATAA
1 TATTTATAATAAATTATTTATACTTAATTTTACTAAATAACATAA
* * *
84689152 TATTTACAATAAAATATTTATACTT-ATTTTAACTAAATAACATGA
1 TATTTATAATAAATTATTTATACTTAATTTT-ACTAAATAACATAA
* *
84689197 TATTTATTATCAATTATTTATACTT
1 TATTTATAATAAATTATTTATACTT
84689222 GGCCAATGAC
Statistics
Matches: 57, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
44 5 0.09
45 52 0.91
ACGTcount: A:0.41, C:0.06, G:0.02, T:0.51
Consensus pattern (45 bp):
TATTTATAATAAATTATTTATACTTAATTTTACTAAATAACATAA
Found at i:84700402 original size:59 final size:59
Alignment explanation
Indices: 84700310--84700428 Score: 229
Period size: 59 Copynumber: 2.0 Consensus size: 59
84700300 GAGTTTTTTT
84700310 TATTTTAGTTTTCTAATTAGATTAGGACTAGTTATAAGGCCTATTTAAAGGCATGGCTG
1 TATTTTAGTTTTCTAATTAGATTAGGACTAGTTATAAGGCCTATTTAAAGGCATGGCTG
*
84700369 TATTTTAGTTTTCTAATTATATTAGGACTAGTTATAAGGCCTATTTAAAGGCATGGCTG
1 TATTTTAGTTTTCTAATTAGATTAGGACTAGTTATAAGGCCTATTTAAAGGCATGGCTG
84700428 T
1 T
84700429 CCACCTTGTT
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.42
Consensus pattern (59 bp):
TATTTTAGTTTTCTAATTAGATTAGGACTAGTTATAAGGCCTATTTAAAGGCATGGCTG
Found at i:84700789 original size:65 final size:65
Alignment explanation
Indices: 84700685--84700813 Score: 249
Period size: 65 Copynumber: 2.0 Consensus size: 65
84700675 TAATTTCTTA
84700685 CTGTCAATTCTTTCTTTATTTCTACTTGTGCTGAATCATTATCTAATCTATTTTCTGTTCTTATC
1 CTGTCAATTCTTTCTTTATTTCTACTTGTGCTGAATCATTATCTAATCTATTTTCTGTTCTTATC
*
84700750 CTGTCAATTCTTTTTTTATTTCTACTTGTGCTGAATCATTATCTAATCTATTTTCTGTTCTTAT
1 CTGTCAATTCTTTCTTTATTTCTACTTGTGCTGAATCATTATCTAATCTATTTTCTGTTCTTAT
84700814 TGTGTTTTCA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 63 1.00
ACGTcount: A:0.19, C:0.19, G:0.08, T:0.55
Consensus pattern (65 bp):
CTGTCAATTCTTTCTTTATTTCTACTTGTGCTGAATCATTATCTAATCTATTTTCTGTTCTTATC
Found at i:84700802 original size:32 final size:32
Alignment explanation
Indices: 84700701--84700802 Score: 84
Period size: 32 Copynumber: 3.2 Consensus size: 32
84700691 ATTCTTTCTT
84700701 TATTTCTACTTGTGCTGAATCATTATCTAATC
1 TATTTCTACTTGTGCTGAATCATTATCTAATC
* * * * ** *
84700733 TATTTTCTGTTCTTATCCTG--TCAAT-TCTTTTTT
1 TA-TTTC--TACTTGTGCTGAATCATTATC-TAATC
84700766 TATTTCTACTTGTGCTGAATCATTATCTAATC
1 TATTTCTACTTGTGCTGAATCATTATCTAATC
84700798 TATTT
1 TATTT
84700803 TCTGTTCTTA
Statistics
Matches: 49, Mismatches: 14, Indels: 14
0.64 0.18 0.18
Matches are distributed among these distances:
30 8 0.16
32 19 0.39
33 14 0.29
35 8 0.16
ACGTcount: A:0.21, C:0.18, G:0.08, T:0.54
Consensus pattern (32 bp):
TATTTCTACTTGTGCTGAATCATTATCTAATC
Found at i:84701645 original size:65 final size:65
Alignment explanation
Indices: 84701565--84701693 Score: 249
Period size: 65 Copynumber: 2.0 Consensus size: 65
84701555 TTTGCCTCAC
*
84701565 AAATTTGGCAGAATATCATTAACAAAAATATTCCAAAAAGTAGTGTCCCAAAAGGCTTGGTTACT
1 AAATTTGGCAAAATATCATTAACAAAAATATTCCAAAAAGTAGTGTCCCAAAAGGCTTGGTTACT
84701630 AAATTTGGCAAAATATCATTAACAAAAATATTCCAAAAAGTAGTGTCCCAAAAGGCTTGGTTAC
1 AAATTTGGCAAAATATCATTAACAAAAATATTCCAAAAAGTAGTGTCCCAAAAGGCTTGGTTAC
84701694 ATGATTTTAT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 63 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.27
Consensus pattern (65 bp):
AAATTTGGCAAAATATCATTAACAAAAATATTCCAAAAAGTAGTGTCCCAAAAGGCTTGGTTACT
Found at i:84702450 original size:22 final size:22
Alignment explanation
Indices: 84702399--84702464 Score: 80
Period size: 21 Copynumber: 3.0 Consensus size: 22
84702389 GGTATTTGGG
* *
84702399 AATTGGTTCGAAATAGTATGG-
1 AATTGGTACGAAATGGTATGGT
84702420 AATTGGTACGAAATGGTATGGT
1 AATTGGTACGAAATGGTATGGT
* *
84702442 ATTTGGTACGAATTGGTAATGGT
1 AATTGGTACGAAATGGT-ATGGT
84702465 TCAAAAGGAC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
21 19 0.49
22 15 0.38
23 5 0.13
ACGTcount: A:0.30, C:0.05, G:0.30, T:0.35
Consensus pattern (22 bp):
AATTGGTACGAAATGGTATGGT
Found at i:84703961 original size:14 final size:14
Alignment explanation
Indices: 84703919--84703963 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
84703909 TTAAAGAAGC
84703919 AACTCATTAAATTA
1 AACTCATTAAATTA
* *
84703933 AATTCATCAAA-TA
1 AACTCATTAAATTA
*
84703946 AACTCATTTAATTA
1 AACTCATTAAATTA
84703960 AACT
1 AACT
84703964 AAGATGAGTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
13 10 0.40
14 15 0.60
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.36
Consensus pattern (14 bp):
AACTCATTAAATTA
Found at i:84705468 original size:19 final size:19
Alignment explanation
Indices: 84705444--84705483 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
84705434 AGCTCCCATG
84705444 TAGCTCCACACTAGCTCAT
1 TAGCTCCACACTAGCTCAT
***
84705463 TAGCTCGGGACTAGCTCAT
1 TAGCTCCACACTAGCTCAT
84705482 TA
1 TA
84705484 TCAGCTCACG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (19 bp):
TAGCTCCACACTAGCTCAT
Found at i:84706756 original size:13 final size:14
Alignment explanation
Indices: 84706727--84706766 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
84706717 AACCGACCAA
*
84706727 TTTGTTCATATCCC-
1 TTTGTTCCTA-CCCT
84706741 TTTGTTCCTACCCT
1 TTTGTTCCTACCCT
84706755 TTTGTTCCTACC
1 TTTGTTCCTACC
84706767 ATTCCGTTCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 3 0.12
14 21 0.88
ACGTcount: A:0.10, C:0.33, G:0.07, T:0.50
Consensus pattern (14 bp):
TTTGTTCCTACCCT
Found at i:84713923 original size:16 final size:15
Alignment explanation
Indices: 84713902--84713969 Score: 75
Period size: 16 Copynumber: 4.3 Consensus size: 15
84713892 ACATTCTTGT
84713902 AAAGAAAAAACAAAGA
1 AAAGAAAAAA-AAAGA
84713918 AAAGAAAAGAAAAAGA
1 AAAGAAAA-AAAAAGA
*
84713934 AAA-AGAAGAAAAAGA
1 AAAGA-AAAAAAAAGA
*
84713949 AAATGAAATAAAAAGA
1 AAA-GAAAAAAAAAGA
84713965 AAAGA
1 AAAGA
84713970 GAGGCAAGAG
Statistics
Matches: 46, Mismatches: 2, Indels: 9
0.81 0.04 0.16
Matches are distributed among these distances:
15 13 0.28
16 30 0.65
17 3 0.07
ACGTcount: A:0.79, C:0.01, G:0.16, T:0.03
Consensus pattern (15 bp):
AAAGAAAAAAAAAGA
Found at i:84713928 original size:21 final size:21
Alignment explanation
Indices: 84713903--84713967 Score: 71
Period size: 21 Copynumber: 3.0 Consensus size: 21
84713893 CATTCTTGTA
84713903 AAGAAAAA-ACAAAGAAAAG-AA
1 AAGAAAAAGA-AAA-AAAAGAAA
*
84713924 AAGAAAAAGAAAAAGAAGAAA
1 AAGAAAAAGAAAAAAAAGAAA
*
84713945 AAGAAAATGAAATAAAAAGAAA
1 AAGAAAAAGAAA-AAAAAGAAA
84713967 A
1 A
84713968 GAGAGGCAAG
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
20 4 0.11
21 24 0.63
22 10 0.26
ACGTcount: A:0.80, C:0.02, G:0.15, T:0.03
Consensus pattern (21 bp):
AAGAAAAAGAAAAAAAAGAAA
Found at i:84713967 original size:6 final size:6
Alignment explanation
Indices: 84713902--84713956 Score: 50
Period size: 6 Copynumber: 10.2 Consensus size: 6
84713892 ACATTCTTGT
*
84713902 AAAGAA AAA-AC AAAG-A AAAG-A AAAGAA AAAGAA AAAG-- -AAGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA
*
84713944 AAAGAA AATGAA A
1 AAAGAA AAAGAA A
84713957 TAAAAAGAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
3 3 0.07
5 13 0.32
6 25 0.61
ACGTcount: A:0.80, C:0.02, G:0.16, T:0.02
Consensus pattern (6 bp):
AAAGAA
Found at i:84714070 original size:24 final size:24
Alignment explanation
Indices: 84714043--84714105 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 24
84714033 AAAACAAAAA
*
84714043 GAAAAAGAAAAAGAAAATGAGATT
1 GAAAAAGAAAAAGAAAAAGAGATT
* * *
84714067 GAAAAAGAGAATGAAAAAGAGTTT
1 GAAAAAGAAAAAGAAAAAGAGATT
* *
84714091 GAGAGAGAAAAAGAA
1 GAAAAAGAAAAAGAA
84714106 TGTGAACAAG
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.63, C:0.00, G:0.25, T:0.11
Consensus pattern (24 bp):
GAAAAAGAAAAAGAAAAAGAGATT
Found at i:84714072 original size:13 final size:12
Alignment explanation
Indices: 84714043--84714087 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
84714033 AAAACAAAAA
* *
84714043 GAAAAAGAAAAA
1 GAAAAAGAGAAT
* *
84714055 GAAAATGAGATT
1 GAAAAAGAGAAT
84714067 GAAAAAGAGAAT
1 GAAAAAGAGAAT
84714079 GAAAAAGAG
1 GAAAAAGAG
84714088 TTTGAGAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.24, T:0.09
Consensus pattern (12 bp):
GAAAAAGAGAAT
Found at i:84716408 original size:30 final size:30
Alignment explanation
Indices: 84716374--84716460 Score: 70
Period size: 30 Copynumber: 2.9 Consensus size: 30
84716364 AGCTCACTCC
84716374 TAGCTCATATTCAGCTCACGAGCTAAACCT
1 TAGCTCATATTCAGCTCACGAGCTAAACCT
* * * * * *
84716404 TAGCTTAGT-TTCAGCTTAGGAGTTTAATCT
1 TAGCTCA-TATTCAGCTCACGAGCTAAACCT
* *
84716434 CAGCTCA-ACTTTAGCTCACGAGCTAAA
1 TAGCTCATA-TTCAGCTCACGAGCTAAA
84716461 GCCTATGATA
Statistics
Matches: 41, Mismatches: 13, Indels: 6
0.68 0.22 0.10
Matches are distributed among these distances:
30 40 0.98
31 1 0.02
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (30 bp):
TAGCTCATATTCAGCTCACGAGCTAAACCT
Found at i:84719979 original size:58 final size:58
Alignment explanation
Indices: 84719889--84720001 Score: 217
Period size: 58 Copynumber: 1.9 Consensus size: 58
84719879 GAGTTTTTTC
*
84719889 CAAGATTTCTTTCTTGAGTTTTCTTTAGAAGTTGTTTTAACAATCTTGTGATTGTCTT
1 CAAGATTTCTCTCTTGAGTTTTCTTTAGAAGTTGTTTTAACAATCTTGTGATTGTCTT
84719947 CAAGATTTCTCTCTTGAGTTTTCTTTAGAAGTTGTTTTAACAATCTTGTGATTGT
1 CAAGATTTCTCTCTTGAGTTTTCTTTAGAAGTTGTTTTAACAATCTTGTGATTGT
84720002 GGGAGCCATC
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 54 1.00
ACGTcount: A:0.21, C:0.12, G:0.16, T:0.50
Consensus pattern (58 bp):
CAAGATTTCTCTCTTGAGTTTTCTTTAGAAGTTGTTTTAACAATCTTGTGATTGTCTT
Found at i:84723856 original size:27 final size:27
Alignment explanation
Indices: 84723820--84723874 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
84723810 ACTTAGATTT
**
84723820 TACATTGGTTAAATACTTAGTGTGAGA
1 TACATTGGTTAAATACCAAGTGTGAGA
84723847 TACATTGGTTAAATACCAAGTGTGAGA
1 TACATTGGTTAAATACCAAGTGTGAGA
84723874 T
1 T
84723875 TTGCATATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.35, C:0.09, G:0.22, T:0.35
Consensus pattern (27 bp):
TACATTGGTTAAATACCAAGTGTGAGA
Found at i:84727550 original size:3 final size:3
Alignment explanation
Indices: 84727542--84727599 Score: 53
Period size: 3 Copynumber: 19.3 Consensus size: 3
84727532 ATTACTTAAC
* * * * * * *
84727542 TAT TAT TAT TAT TAT TGT TAT TAT TAT TAA TGT TAC TAT AAC TAT TAG
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
84727590 TAT TAT TAT T
1 TAT TAT TAT T
84727600 TATATTAGTT
Statistics
Matches: 41, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:84732296 original size:18 final size:20
Alignment explanation
Indices: 84732261--84732302 Score: 70
Period size: 18 Copynumber: 2.2 Consensus size: 20
84732251 CAGATTCAAA
84732261 AAAATAAAAAAATCAAAATC
1 AAAATAAAAAAATCAAAATC
84732281 AAAAT-AAAAAAT-AAAATC
1 AAAATAAAAAAATCAAAATC
84732299 AAAA
1 AAAA
84732303 ATGAGAGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 10 0.45
19 7 0.32
20 5 0.23
ACGTcount: A:0.79, C:0.07, G:0.00, T:0.14
Consensus pattern (20 bp):
AAAATAAAAAAATCAAAATC
Found at i:84732301 original size:24 final size:23
Alignment explanation
Indices: 84732256--84732302 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 23
84732246 GAGTTCAGAT
84732256 TCAAAAAAATAAAAAAATCAAAA
1 TCAAAAAAATAAAAAAATCAAAA
84732279 TCAAAATAAA-AAATAAAATCAAAA
1 TCAAAA-AAATAAA-AAAATCAAAA
84732303 ATGAGAGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 9 0.41
24 13 0.59
ACGTcount: A:0.77, C:0.09, G:0.00, T:0.15
Consensus pattern (23 bp):
TCAAAAAAATAAAAAAATCAAAA
Found at i:84732337 original size:14 final size:15
Alignment explanation
Indices: 84732310--84732340 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
84732300 AAAATGAGAG
84732310 AAAAAGAAAGAAGAA
1 AAAAAGAAAGAAGAA
84732325 AAAAAGAAA-AAGAA
1 AAAAAGAAAGAAGAA
84732339 AA
1 AA
84732341 GAAAATAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.44
15 9 0.56
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAGAAGAA
Found at i:84734856 original size:44 final size:44
Alignment explanation
Indices: 84734547--84734844 Score: 449
Period size: 44 Copynumber: 6.8 Consensus size: 44
84734537 ACAGATTGGT
*
84734547 AAGATTGTGAA-TCCTATCTCCCTGGACAGCAGTGGAATAGGTTA
1 AAGATTGT-AAGTCCTATCTCCCTGGACAGCAGTGGAATAGGTTG
*
84734591 AAGATTGTAAGTCCTATCTCCTTGGACAGCAGTGGAATAGGTTG
1 AAGATTGTAAGTCCTATCTCCCTGGACAGCAGTGGAATAGGTTG
* *
84734635 AAGATTGTAAGTCCTATCTCCCTAGACAACAGTGGAATAGGTTG
1 AAGATTGTAAGTCCTATCTCCCTGGACAGCAGTGGAATAGGTTG
* * *
84734679 AAGATTGTAAGTCCTATCTCTCTAGACAACAGTGGAATAGGTTG
1 AAGATTGTAAGTCCTATCTCCCTGGACAGCAGTGGAATAGGTTG
* * *
84734723 AAGATTGTAAGTCCTATCTTCCTGGACAACAGTGGAATAGGTTA
1 AAGATTGTAAGTCCTATCTCCCTGGACAGCAGTGGAATAGGTTG
*
84734767 AAGATTGTAAGTCCTATCTCCCTGGATAGCAGTGGAATAGGTTG
1 AAGATTGTAAGTCCTATCTCCCTGGACAGCAGTGGAATAGGTTG
84734811 AAGATTGTGAA-TCCTATCTCCCT-GAGCAGCAGTG
1 AAGATTGT-AAGTCCTATCTCCCTGGA-CAGCAGTG
84734845 AAGTACGTTG
Statistics
Matches: 236, Mismatches: 15, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
43 4 0.02
44 230 0.97
45 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (44 bp):
AAGATTGTAAGTCCTATCTCCCTGGACAGCAGTGGAATAGGTTG
Found at i:84734923 original size:88 final size:88
Alignment explanation
Indices: 84734827--84735924 Score: 1497
Period size: 88 Copynumber: 12.5 Consensus size: 88
84734817 GTGAATCCTA
* * * * * *
84734827 TCTCCCTGAGCAGCAGTGAAGTACGTTGAAAATAGCAGATATTGTCTTCCTGTACTGGCAGTGAA
1 TCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAA
* * * *
84734892 GTAGATCGAAGATCTCATCCTTA
66 GTAGATCGAAGACCCCAGCCTTG
* * *
84734915 TCTCCCTGAACAGCAGCGGAGTAGGTTAAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGGGAA
1 TCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAA
*
84734980 GTAGATCGAAGACCCCAACCTTG
66 GTAGATCGAAGACCCCAGCCTTG
* * * * * *
84735003 TTTCCCTGAGCAGCAATAGAGTAGGTTGAAAATAGTAGATCTTGTCTTCTTGTATTGGCAGCGAA
1 TCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAA
*
84735068 GTAGATTGAAGACCCCAGCCTTG
66 GTAGATCGAAGACCCCAGCCTTG
** * *
84735091 TCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGCAGATCACGTCTTCCTGTATTGGTAGTGAA
1 TCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAA
* *
84735156 GTAGATCGAAGACCCCAACCTTA
66 GTAGATCGAAGACCCCAGCCTTG
* * * * *
84735179 TCTCCCTTAGCAGTAGTGGAGTAGGTTGAAAATAACAGATCTTGTCTTCCTATATTGGCAGCGAA
1 TCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAA
84735244 GTAGATCGAAGACCCCAGCCTTG
66 GTAGATCGAAGACCCCAGCCTTG
* * * *
84735267 TCTCCCTGAACAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTTTTCTTGTATTGGCAGCGAA
1 TCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAA
* *
84735332 GTAGATCAAAGACCCCAGCCTTA
66 GTAGATCGAAGACCCCAGCCTTG
*
84735355 TCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAAT-GACAGATCTTGT-TTTCTAGTATTGGCAGCG
1 TCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAG-CAGATCTTGTCTTCCT-GTATTGGCAGCG
* *
84735418 AAGTAGATCGAAAACTCCAGCCTTG
64 AAGTAGATCGAAGACCCCAGCCTTG
* * * *
84735443 TCTCCTTGAGCAGCAGTGGAGTAGGTTAAAAATATCAGATCTTGTATTCC-GTTATTGGCAGCAA
1 TCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGCAGATCTTGTCTTCCTG-TATTGGCAGCGA
*
84735507 AGTAGATCGAAGACCCTAGCCTTG
65 AGTAGATCGAAGACCCCAGCCTTG
** * * *
84735531 TCTCCCT-ACGCAATAGTGGAGTAGGTTGAAAATAGTAGATCTTGTCTTCTTGTATTGGCAGCGA
1 TCTCCCTGA-GCAGCAGTGGAGTAGGTTAAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCGA
84735595 AGTAGATCGAAGACCCCAGCCTTG
65 AGTAGATCGAAGACCCCAGCCTTG
* * * *
84735619 TCTCCCTAAGCAGTAGTGGAGTAGGTTAAAAAT-GAAAGATCTTGTCTTCCAGTATTGGCAGCGA
1 TCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAG-CAGATCTTGTCTTCCTGTATTGGCAGCGA
* *
84735683 AGTAGATTGAAAACCCCAGCCTTG
65 AGTAGATCGAAGACCCCAGCCTTG
* * * *
84735707 TCTTCTTAAGCAGCAGTGGAGTAGGTTAAAAATAGCAGATATTGTCTTCCTGTATTGGCAGCGAA
1 TCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAA
*
84735772 GTAGATCGAAGACCCCAGTCTTG
66 GTAGATCGAAGACCCCAGCCTTG
* *
84735795 TCTCCCTGAGTAACAGTGGAGTAGGTTAAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAA
1 TCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAA
*
84735860 GTAGATCGAAGACCCCAACCTTG
66 GTAGATCGAAGACCCCAGCCTTG
* * *
84735883 TCTCCCTGAGTAGCAGTGGAGTAGGTTGAAAATA-TAGATCTT
1 TCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGCAGATCTT
84735925 ATCTATCTGA
Statistics
Matches: 892, Mismatches: 108, Indels: 21
0.87 0.11 0.02
Matches are distributed among these distances:
87 14 0.02
88 872 0.98
89 6 0.01
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.27
Consensus pattern (88 bp):
TCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAA
GTAGATCGAAGACCCCAGCCTTG
Found at i:84735796 original size:44 final size:44
Alignment explanation
Indices: 84735748--84735890 Score: 126
Period size: 44 Copynumber: 3.2 Consensus size: 44
84735738 ATAGCAGATA
*
84735748 TTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGACCCCAGTC
1 TTGTCTCCCTGTATTGGCAGCGAAGTAGATCGAAGACCCCAGTC
* ** * * * ** * ***
84735792 TTGTCTCCCTG-AGTAACAGTGGAGTAGGTTAAAAATAGCAGATC
1 TTGTCTCCCTGTATTGGCAGCGAAGTAGATCGAAGACCCCAG-TC
* **
84735836 TTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGACCCCAACC
1 TTGTCTCCCTGTATTGGCAGCGAAGTAGATCGAAGACCCCAGTC
84735880 TTGTCTCCCTG
1 TTGTCTCCCTG
84735891 AGTAGCAGTG
Statistics
Matches: 68, Mismatches: 29, Indels: 4
0.67 0.29 0.04
Matches are distributed among these distances:
43 18 0.26
44 33 0.49
45 17 0.25
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (44 bp):
TTGTCTCCCTGTATTGGCAGCGAAGTAGATCGAAGACCCCAGTC
Found at i:84751679 original size:63 final size:61
Alignment explanation
Indices: 84751570--84751688 Score: 157
Period size: 63 Copynumber: 1.9 Consensus size: 61
84751560 CATCAGGTAC
* ** *
84751570 CATAATAAAACACATATTGATAGTTCATGTACCACATTGGACATTTTATGAAAGTACACATAT
1 CATAATAAAACACATATTAATAGTTCAAATACCACATTAGACATTTT-T-AAAGTACACATAT
* * *
84751633 CATAATAAAATACATATTAATAGTTCAAATACCTCATTAGATATTTTTAAAGTACA
1 CATAATAAAACACATATTAATAGTTCAAATACCACATTAGACATTTTTAAAGTACA
84751689 TGTACTACAT
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
61 8 0.16
62 1 0.02
63 40 0.82
ACGTcount: A:0.44, C:0.14, G:0.08, T:0.34
Consensus pattern (61 bp):
CATAATAAAACACATATTAATAGTTCAAATACCACATTAGACATTTTTAAAGTACACATAT
Found at i:84754219 original size:15 final size:16
Alignment explanation
Indices: 84754189--84754220 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
84754179 TCAAACATGC
84754189 TTTAACACATTATCAA
1 TTTAACACATTATCAA
84754205 TTTAACACA-TATCAA
1 TTTAACACATTATCAA
84754220 T
1 T
84754221 AAGGCACAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.44, C:0.19, G:0.00, T:0.38
Consensus pattern (16 bp):
TTTAACACATTATCAA
Found at i:84765308 original size:914 final size:917
Alignment explanation
Indices: 84763531--84765325 Score: 3184
Period size: 914 Copynumber: 2.0 Consensus size: 917
84763521 CTTGTGGATT
* * *
84763531 TCCCTTCGTTTCGATTTATCCACCAGGAAAGCAAACTTGTTCCCTTTCTTTACAGCCGAACAGCC
1 TCCCTTCATTTCGATTTATCCACCAGCAAAGCAAACTTGTTCCCTTTATTTACAGCCGAACAGCC
* *
84763596 ATGCAAACTAGTAAAGAAATTATGGCAATCAAACCAGCCGCACATCTGACATCAGCAATTAGCAA
66 ATGCAAACCAGTAAAGAAATTATGGCAATCAAACCAGCCGCACATCCGACATCAGCAATTAGCAA
84763661 GCTTCTCTTCTTGGATTTTTCACCTGCAGAATTGGACGAATACGAAGGTGGTCGTGGAGCCACCT
131 GCTTCTCTTCTTGGATTTTTCACCTGCAGAATTGGACGAATACGAAGGTGGTCGTGGAG-CACCT
*
84763726 GTAGTTCTAGGTTTAGTTTGCCCAAATTGTCATCAGAGTTGCTTAATTTGAACACTTCAATCCCA
195 GTAGTTCTAGGTTTAGTTTGCCCAAATTGCCATCAGAGTTGCTTAATTTGAACACTTCAATCCCA
84763791 TTTAAGATTACATCATAGTAATTTGCATGAATGGTGATGTACTCCTTTGATACTAACACGACATA
260 TTTAAGATTACATCATAGTAATTTGCATGAATGGTGATGTACTCCTTTGATACTAACACGACATA
84763856 ATCCTTAAATATCAGAACTTTGCCTTGCACAGTCCACACAATCACATCAGCGTTTTGTTTAGCCG
325 ATCCTTAAATATCAGAACTTTGCCTTGCACAGTCCACACAATCACATCAGCGTTTTGTTTAGCCG
*
84763921 TCTGACTGTTTATAAAGACCTTCAACTTTTGGTCTCCCAGAGAGTTTACCAGATCTTGTCGTTCA
390 TCTGACTGTTTATAAAGACCTTAAACTTTTGGTCTCCCAGAGAGTTTACCAGATCTTGTCGTTCA
84763986 CAAAAATGAAGCCTCACCATATACCTAAATCCCGAACCCATGGGCAATCTCCATGATAAGTTATG
455 CAAAAATGAAGCCTCACCATATACCTAAATCCCGAACCCATGGGCAATCTCCATGATAAGTTATG
*
84764051 CTTCTCGTTGTACGCAAGGCTAGGCCCCATTGTCTGTGTAGTCTGATAAACCATCTCCGGTGCCG
520 CTTCTCGTTGTACGCAAGGCTAGGCCCCATTGCCTGTGTAGTCTGATAAACCATCTCCGGTGCCG
84764116 TGTATCTCAGAATAATTGTGTAGTTGATTAGCATGGAGGTGTTGACAGTGACATAATTATTTTTT
585 TGTATCTCAGAATAATTGTGTAGTTGATTAGCATGGAGGTGTTGACAGTGACATAATTATTTTTT
*
84764181 GTCATGTAAAAATAGTCATCGGACGAAAGCCGGAAAAGGCCAGTATCATCCTTGAGGGAAATGGG
650 GTCATGTAAAAATAGTCATCGGACGAAAGCCGAAAAAGGCCAGTATCATCCTTGAGGGAAATGGG
84764246 TTTGCCCTCAACATTCAATCGATACGCCATCTCAAGTACCGTATCATTCTCAACGAGGAATGGAT
715 TTTGCCCTCAACATTCAATCGATACGCCATCTCAAGTACCGTATCATTCTCAACGAGGAATGGAT
* * * * *
84764311 AATTCTGACCAATGAAAGGTACGTACGTTGAGTCAGGCGGTGTTTAGTACAGATCGGTAGGCATC
780 AATTCTGACCAACGAAAGGTACATACGTTGAGTCAGGCAGTGTGTAGTAAAGATCGGTAGGCATC
*
84764376 GACACGATCTCAATTCCATTGATGAAATCGTAAGTAAAGATTGGTAGGCATCAACACGATCACGA
845 GACACGATCTCAATTCCATTGATGAAAGCGTAAGTAAAGATTGGTAGGCATCAACACGATCACGA
84764441 TCTCGATC
910 TCTCGATC
* *
84764449 TCCCTTCATTTCGATTTATCCACCAGCAAAGCAAACTTGTTCCCTTTATTTGCAGCCGAATAGCC
1 TCCCTTCATTTCGATTTATCCACCAGCAAAGCAAACTTGTTCCCTTTATTTACAGCCGAACAGCC
84764514 ATGCAAACCAGTAAAGAAATTATGGCAATCAAACCAGCCGCACATCCGACATCAGCAATTAGCAA
66 ATGCAAACCAGTAAAGAAATTATGGCAATCAAACCAGCCGCACATCCGACATCAGCAATTAGCAA
* *
84764579 GCTTCTCTTCTTGGATTTTTCACCTGCAGAATTGGACGAATCCGAAGGTGGTTGT-G-G-ACCTG
131 GCTTCTCTTCTTGGATTTTTCACCTGCAGAATTGGACGAATACGAAGGTGGTCGTGGAGCACCTG
* * *
84764641 TAGTTCTAGGTTTGGTTTGCCCAAATTGCCATTAGAGTTGCTTAATTTGAACACTTGAATCCCAT
196 TAGTTCTAGGTTTAGTTTGCCCAAATTGCCATCAGAGTTGCTTAATTTGAACACTTCAATCCCAT
84764706 TTAAGATTACATCATAGTAATTTGCATGAATGGTGATGTACTCCTTTGATACTAACACGACATAA
261 TTAAGATTACATCATAGTAATTTGCATGAATGGTGATGTACTCCTTTGATACTAACACGACATAA
84764771 TCCTTAAATATCAGAACTTTGCCTTGCACAGTCCACACAATCACATCAGCGTTTTGTTTAGCCGT
326 TCCTTAAATATCAGAACTTTGCCTTGCACAGTCCACACAATCACATCAGCGTTTTGTTTAGCCGT
*
84764836 CTGACTGTTTATAAAGACCTTAAACTTTTGGTCTCCCAGAGAGTTTACCAGATCTTGTGGTTCAC
391 CTGACTGTTTATAAAGACCTTAAACTTTTGGTCTCCCAGAGAGTTTACCAGATCTTGTCGTTCAC
84764901 AAAAATGAAGCCTCACCATATACCTAAATCCCGAACCCATGGGCAATCTCCATGATAAGTTATGC
456 AAAAATGAAGCCTCACCATATACCTAAATCCCGAACCCATGGGCAATCTCCATGATAAGTTATGC
84764966 TTCTCGTTGTACGCAAGGCTAGGCCCCATTGCCTGTGTAGTCTGATAAACCATCTCCGGTGCCGT
521 TTCTCGTTGTACGCAAGGCTAGGCCCCATTGCCTGTGTAGTCTGATAAACCATCTCCGGTGCCGT
* *
84765031 GTATCTCGGAATCATTGTGTAGTTGATTAGCATGGAGGTGTTGACAGTGACATAATTATTTTTTG
586 GTATCTCAGAATAATTGTGTAGTTGATTAGCATGGAGGTGTTGACAGTGACATAATTATTTTTTG
* * *** *
84765096 TCATGTAAAAATAGTCATTGGATGAATTTCGAAAAAGGCCAGTATCATCCTTGTGGGAAATGGGT
651 TCATGTAAAAATAGTCATCGGACGAAAGCCGAAAAAGGCCAGTATCATCCTTGAGGGAAATGGGT
* * * *
84765161 TTGGCCC-CAACATTCAATCGATACGCCATCTCAATTATCGTGTCATTCTTAACGAGGAATGGAT
716 TT-GCCCTCAACATTCAATCGATACGCCATCTCAAGTACCGTATCATTCTCAACGAGGAATGGAT
* *
84765225 AATTCTGGCCAACGAAAGGTACATACGTTGAGTCAGGCAGTGTGTAGTAAAGATTGGTAGGCATC
780 AATTCTGACCAACGAAAGGTACATACGTTGAGTCAGGCAGTGTGTAGTAAAGATCGGTAGGCATC
* * *
84765290 GACACGTTCTCGATTCCATTGTTGAAAGCGTAAGTA
845 GACACGATCTCAATTCCATTGATGAAAGCGTAAGTA
84765326 TCGTTAGAAG
Statistics
Matches: 836, Mismatches: 40, Indels: 6
0.95 0.05 0.01
Matches are distributed among these distances:
914 654 0.78
915 4 0.00
916 1 0.00
917 1 0.00
918 176 0.21
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.30
Consensus pattern (917 bp):
TCCCTTCATTTCGATTTATCCACCAGCAAAGCAAACTTGTTCCCTTTATTTACAGCCGAACAGCC
ATGCAAACCAGTAAAGAAATTATGGCAATCAAACCAGCCGCACATCCGACATCAGCAATTAGCAA
GCTTCTCTTCTTGGATTTTTCACCTGCAGAATTGGACGAATACGAAGGTGGTCGTGGAGCACCTG
TAGTTCTAGGTTTAGTTTGCCCAAATTGCCATCAGAGTTGCTTAATTTGAACACTTCAATCCCAT
TTAAGATTACATCATAGTAATTTGCATGAATGGTGATGTACTCCTTTGATACTAACACGACATAA
TCCTTAAATATCAGAACTTTGCCTTGCACAGTCCACACAATCACATCAGCGTTTTGTTTAGCCGT
CTGACTGTTTATAAAGACCTTAAACTTTTGGTCTCCCAGAGAGTTTACCAGATCTTGTCGTTCAC
AAAAATGAAGCCTCACCATATACCTAAATCCCGAACCCATGGGCAATCTCCATGATAAGTTATGC
TTCTCGTTGTACGCAAGGCTAGGCCCCATTGCCTGTGTAGTCTGATAAACCATCTCCGGTGCCGT
GTATCTCAGAATAATTGTGTAGTTGATTAGCATGGAGGTGTTGACAGTGACATAATTATTTTTTG
TCATGTAAAAATAGTCATCGGACGAAAGCCGAAAAAGGCCAGTATCATCCTTGAGGGAAATGGGT
TTGCCCTCAACATTCAATCGATACGCCATCTCAAGTACCGTATCATTCTCAACGAGGAATGGATA
ATTCTGACCAACGAAAGGTACATACGTTGAGTCAGGCAGTGTGTAGTAAAGATCGGTAGGCATCG
ACACGATCTCAATTCCATTGATGAAAGCGTAAGTAAAGATTGGTAGGCATCAACACGATCACGAT
CTCGATC
Found at i:84768298 original size:102 final size:100
Alignment explanation
Indices: 84768166--84768405 Score: 392
Period size: 102 Copynumber: 2.4 Consensus size: 100
84768156 TTTCCTGAAC
*
84768166 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGGTGCCCAA-GCCATGT
1 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGACTTCTCATATCGGTG-CCAACGCCATGT
*
84768230 CTCAAACATGGTCTTACAGGGGACCTCTCTCATCTCGG
65 CCCAAACATGGTCTTACAGGGGA-C-CTCTCATCTCGG
* *
84768268 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGACTTCTCATCTCGGTGCCAACGCCATGTC
1 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGACTTCTCATATCGGTGCCAACGCCATGTC
*
84768333 CCAAACATGGTCTTACATGGGACCTCTCATCTCGG
66 CCAAACATGGTCTTACAGGGGACCTCTCATCTCGG
*
84768368 TGCCAATGCCATGTCCCAGATATGGTCTTACATGGGAC
1 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAC
84768406 CTCTTTACCC
Statistics
Matches: 130, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
100 48 0.37
101 5 0.04
102 77 0.59
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.27
Consensus pattern (100 bp):
TGCCAATGCCATATCCCAGATATGGTCTTACATGGGACTTCTCATATCGGTGCCAACGCCATGTC
CCAAACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:84768393 original size:152 final size:150
Alignment explanation
Indices: 84768125--84768409 Score: 369
Period size: 152 Copynumber: 1.9 Consensus size: 150
84768115 CATGCCAAAA
* * * * *
84768125 CCATGTCCCAGACATGGTCTTACATGGGATGTTTCCTGAACTGCCAATGCCATATCCCAGATATG
1 CCATATCCCAGACATGGTCTTACATGGGATGTCTCCTG-ACTGCCAACGCCATATCCCAAACATG
** *
84768190 GTCTTACATGGGAGTTCTCATATCGGTGCCCAAGCCATGTCTCAAACATGGTCTTACAGGGGACC
65 GTCTTACATGGGACCTCTCATATCGGTGCCCAAGCCATGTCCCAAACATGGTCTTACAGGGGACC
84768255 TCTCTCATCTCGGTGCCAATG
130 TCTCTCATCTCGGTGCCAATG
* *
84768276 CCATATCCCAGACATGGTCTTACATGGGACT-TCTCATCTCG-GTGCCAACGCCATGTCCCAAAC
1 CCATATCCCAGACATGGTCTTACATGGGA-TGTCTC--CT-GACTGCCAACGCCATATCCCAAAC
* * * *
84768339 ATGGTCTTACATGGGACCTCTCATCTCGGTG-CCAATGCCATGTCCCAGATATGGTCTTACATGG
62 ATGGTCTTACATGGGACCTCTCATATCGGTGCCCAA-GCCATGTCCCAAACATGGTCTTACAGGG
84768403 GACCTCT
126 GACCTCT
84768410 TTACCCAAAT
Statistics
Matches: 115, Mismatches: 14, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
151 35 0.30
152 77 0.67
153 2 0.02
154 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.27
Consensus pattern (150 bp):
CCATATCCCAGACATGGTCTTACATGGGATGTCTCCTGACTGCCAACGCCATATCCCAAACATGG
TCTTACATGGGACCTCTCATATCGGTGCCCAAGCCATGTCCCAAACATGGTCTTACAGGGGACCT
CTCTCATCTCGGTGCCAATG
Found at i:84768406 original size:50 final size:50
Alignment explanation
Indices: 84768125--84768409 Score: 344
Period size: 50 Copynumber: 5.7 Consensus size: 50
84768115 CATGCCAAAA
** * *
84768125 CCATGTCCCAGACATGGTCTTACATGGGATGTTTC--CT-GAACTGCCAATG
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG--GTGCCAATG
* * ** *
84768174 CCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGGTGCCCAA-G
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTG-CCAATG
* * *
84768224 CCATGTCTCAAACATGGTCTTACAGGGGACCTCTCTCATCTCGGTGCCAATG
1 CCATGTCCCAGACATGGTCTTACATGGGA-C-CTCTCATCTCGGTGCCAATG
* * *
84768276 CCATATCCCAGACATGGTCTTACATGGGACTTCTCATCTCGGTGCCAACG
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATG
*
84768326 CCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATG
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATG
*
84768376 CCATGTCCCAGATATGGTCTTACATGGGACCTCT
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCT
84768410 TTACCCAAAT
Statistics
Matches: 202, Mismatches: 27, Indels: 13
0.83 0.11 0.05
Matches are distributed among these distances:
49 30 0.15
50 123 0.61
51 10 0.05
52 39 0.19
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.27
Consensus pattern (50 bp):
CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATG
Found at i:84773348 original size:25 final size:23
Alignment explanation
Indices: 84773320--84773456 Score: 85
Period size: 25 Copynumber: 6.0 Consensus size: 23
84773310 GTGCTATCAT
84773320 ATTATTAGCATGTCAGTGCTCTCTG
1 ATTATTAGCA--TCAGTGCTCTCTG
*
84773345 ATTA-T-G-A-CA-TGCTCTCTA
1 ATTATTAGCATCAGTGCTCTCTG
*
84773363 ATTATTAGCACGTTAGTGCTCTCTG
1 ATTATTAGCA--TCAGTGCTCTCTG
*
84773388 ATTATTAGTCCATCAGTTCTCTCTG
1 ATTATTAG--CATCAGTGCTCTCTG
* *
84773413 ATTACTA--A-CA-CGCTCTCTG
1 ATTATTAGCATCAGTGCTCTCTG
*
84773432 ATTATTAGCACATTAGTGCTCTCTG
1 ATTATTAG--CATCAGTGCTCTCTG
84773457 TTTAGACAAT
Statistics
Matches: 86, Mismatches: 11, Indels: 30
0.68 0.09 0.24
Matches are distributed among these distances:
18 12 0.14
19 16 0.19
20 3 0.03
21 2 0.02
22 1 0.01
23 2 0.02
24 3 0.03
25 45 0.52
27 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.39
Consensus pattern (23 bp):
ATTATTAGCATCAGTGCTCTCTG
Found at i:84775363 original size:51 final size:50
Alignment explanation
Indices: 84775249--84775375 Score: 152
Period size: 50 Copynumber: 2.5 Consensus size: 50
84775239 GATGGTCATG
* * *
84775249 TGTGTAGTACTATGTACAGGCTACTAAGTGTACCAGAATGATGGGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTAAGTGTACCAGAATGATGGATCACA
*
84775299 TGTGTAGTACTATGTGCAGGCTACTACA-TGTACC-GGATGGTAAT-GATCACA
1 TGTGTAGTACTATGTGCAGGCTACTA-AGTGTACCAGAAT-G--ATGGATCACA
*
84775350 TGTGTAGTACTATGTGTAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
84775376 TGTGAACCGA
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
49 3 0.04
50 32 0.47
51 31 0.46
52 2 0.03
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.31
Consensus pattern (50 bp):
TGTGTAGTACTATGTGCAGGCTACTAAGTGTACCAGAATGATGGATCACA
Found at i:84775437 original size:45 final size:45
Alignment explanation
Indices: 84775381--84775475 Score: 154
Period size: 45 Copynumber: 2.1 Consensus size: 45
84775371 TACTATGTGA
*
84775381 ACCGAACATCATTGATTAGTAAGGTGGTTGCTATGTGCCGATTCC
1 ACCGAACATCATTGATTAGTAAGGTGGTTGCTATGTGCCGAATCC
* * *
84775426 ACCGGACATCATTGATTATTAAGGTGGTTGCTATGTGCTGAATCC
1 ACCGAACATCATTGATTAGTAAGGTGGTTGCTATGTGCCGAATCC
84775471 ACCGA
1 ACCGA
84775476 GTATCTGTTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (45 bp):
ACCGAACATCATTGATTAGTAAGGTGGTTGCTATGTGCCGAATCC
Found at i:84776519 original size:44 final size:44
Alignment explanation
Indices: 84776457--84776543 Score: 165
Period size: 44 Copynumber: 2.0 Consensus size: 44
84776447 AGAGAAAACA
*
84776457 AAAGAAAGAAACGTTCTTTTCTTTACAATTTGGTCCTTTCACCG
1 AAAGAAAGAAACGTTCTTTTCTTGACAATTTGGTCCTTTCACCG
84776501 AAAGAAAGAAACGTTCTTTTCTTGACAATTTGGTCCTTTCACC
1 AAAGAAAGAAACGTTCTTTTCTTGACAATTTGGTCCTTTCACC
84776544 AAATACTCAC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.36
Consensus pattern (44 bp):
AAAGAAAGAAACGTTCTTTTCTTGACAATTTGGTCCTTTCACCG
Found at i:84785260 original size:12 final size:12
Alignment explanation
Indices: 84785243--84785267 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
84785233 TTCATAAGTG
84785243 AGATAAGATGAA
1 AGATAAGATGAA
84785255 AGATAAGATGAA
1 AGATAAGATGAA
84785267 A
1 A
84785268 AAGAAAGTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.24, T:0.16
Consensus pattern (12 bp):
AGATAAGATGAA
Found at i:84790350 original size:27 final size:28
Alignment explanation
Indices: 84790221--84790350 Score: 113
Period size: 28 Copynumber: 4.7 Consensus size: 28
84790211 AACACGTCAG
* * *
84790221 GAAATAATAAACCTTTCTGGTGAACTAT
1 GAAAGAATAAGCCTTTGTGGTGAACTAT
* *
84790249 GAAAGAATAAGCCTTTGCGGTGAAGTAT
1 GAAAGAATAAGCCTTTGTGGTGAACTAT
* * * * ** *
84790277 -AAATCAGT-AGCCTTTATTGCAAACTAC
1 GAAA-GAATAAGCCTTTGTGGTGAACTAT
84790304 GAAAGAATAAGCCTTTGTGGTGAACTAT
1 GAAAGAATAAGCCTTTGTGGTGAACTAT
*
84790332 GAAAG-ATTAGCCTTTGTGG
1 GAAAGAATAAGCCTTTGTGG
84790351 CGGACTTTGT
Statistics
Matches: 77, Mismatches: 22, Indels: 7
0.73 0.21 0.07
Matches are distributed among these distances:
27 30 0.39
28 47 0.61
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (28 bp):
GAAAGAATAAGCCTTTGTGGTGAACTAT
Found at i:84792671 original size:37 final size:36
Alignment explanation
Indices: 84792613--84792801 Score: 177
Period size: 37 Copynumber: 5.1 Consensus size: 36
84792603 ATTACACAAG
*
84792613 TAATCCAACTGA-AACACGCCAATCGCTCATAAGAGC
1 TAATCCACCTGATAACACGCCAAT-GCTCATAAGAGC
*
84792649 TAATCCACCTGATAATACGCCAAATGCTCATAAGAGC
1 TAATCCACCTGATAACACGCC-AATGCTCATAAGAGC
* * * *
84792686 TAATCCACCCGATAACATGTCAAATGCTCATAAGAGG
1 TAATCCACCTGATAACACG-CCAATGCTCATAAGAGC
* * *
84792723 TAATCTACCCT-ATAACAGGCCAAATGCTCATATGAGC
1 TAATCCA-CCTGATAACACGCC-AATGCTCATAAGAGC
** **
84792760 TAATCCACCCT-ATGGCACGCCAAACACTCATAAGAGC
1 TAATCCA-CCTGATAACACGCC-AATGCTCATAAGAGC
84792797 TAATC
1 TAATC
84792802 ATCCACCCTC
Statistics
Matches: 128, Mismatches: 20, Indels: 9
0.82 0.13 0.06
Matches are distributed among these distances:
36 12 0.09
37 110 0.86
38 6 0.05
ACGTcount: A:0.37, C:0.29, G:0.14, T:0.21
Consensus pattern (36 bp):
TAATCCACCTGATAACACGCCAATGCTCATAAGAGC
Found at i:84792790 original size:74 final size:74
Alignment explanation
Indices: 84792625--84792801 Score: 221
Period size: 74 Copynumber: 2.4 Consensus size: 74
84792615 ATCCAACTGA
* *
84792625 AACACGCCAATCGCTCATAAGAGCTAATCCACCTGATAATACGCCAAATGCTCATAAGAGCTAAT
1 AACACGCCAAACGCTCATAAGAGCTAATCCACCTGATAACACGCCAAATGCTCATAAGAGCTAAT
84792690 CCACCCGAT
66 CCACCCGAT
* * * * * * *
84792699 AACATGTCAAATGCTCATAAGAGGTAATCTACCCT-ATAACAGGCCAAATGCTCATATGAGCTAA
1 AACACGCCAAACGCTCATAAGAGCTAATCCA-CCTGATAACACGCCAAATGCTCATAAGAGCTAA
*
84792763 TCCACCCTAT
65 TCCACCCGAT
** *
84792773 GGCACGCCAAACACTCATAAGAGCTAATC
1 AACACGCCAAACGCTCATAAGAGCTAATC
84792802 ATCCACCCTC
Statistics
Matches: 85, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
74 82 0.96
75 3 0.04
ACGTcount: A:0.37, C:0.29, G:0.14, T:0.20
Consensus pattern (74 bp):
AACACGCCAAACGCTCATAAGAGCTAATCCACCTGATAACACGCCAAATGCTCATAAGAGCTAAT
CCACCCGAT
Found at i:84793835 original size:86 final size:86
Alignment explanation
Indices: 84793736--84793913 Score: 322
Period size: 86 Copynumber: 2.1 Consensus size: 86
84793726 TTTTAGTTAG
*
84793736 GGATTAAATTGTTAAAGGTGTAAATTCTAGCTTTTTATTGCGAAATGATGGTTGATATGAGTTGT
1 GGATTAAATTGTTAAAGGTGTAAATTCTAGCATTTTATTGCGAAATGATGGTTGATATGAGTTGT
84793801 TTCAAAGTCCCTTGCACCTAT
66 TTCAAAGTCCCTTGCACCTAT
* *
84793822 GGATTAAATTGTTAAATGTGTAAATTCTAGCATTTTATTGTGAAATGATGGTTGATATGAGTTGT
1 GGATTAAATTGTTAAAGGTGTAAATTCTAGCATTTTATTGCGAAATGATGGTTGATATGAGTTGT
84793887 TTCAAAGTCCCTTGCACCTAT
66 TTCAAAGTCCCTTGCACCTAT
84793908 GG-TTAA
1 GGATTAA
84793914 TATGGATTTA
Statistics
Matches: 89, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
85 4 0.04
86 85 0.96
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.40
Consensus pattern (86 bp):
GGATTAAATTGTTAAAGGTGTAAATTCTAGCATTTTATTGCGAAATGATGGTTGATATGAGTTGT
TTCAAAGTCCCTTGCACCTAT
Found at i:84797361 original size:189 final size:189
Alignment explanation
Indices: 84797038--84797416 Score: 704
Period size: 189 Copynumber: 2.0 Consensus size: 189
84797028 TGATTCTGGG
*
84797038 TATAGACTGGTTAACTTTACATGATGCTGTTGTAAACTGTAGACGAAAGCATATTGTATTGAAAT
1 TATAGACTGGTTAACTTTACATGATGCTATTGTAAACTGTAGACGAAAGCATATTGTATTGAAAT
84797103 GTCAAAATGGTGAAAGGATTCGAATTGAATAAGACATATTGGATGGTACATCTAATGTTATCCCA
66 GTCAAAATGGTGAAAGGATTCGAATTGAATAAGACATATTGGATGGTACATCTAATGTTATCCCA
*
84797168 GCTATGATGACACAATAATATATTCGAAAGGGTTATGAAGCATATCTAGCTTACATATT
131 GCTATGATGACACAACAATATATTCGAAAGGGTTATGAAGCATATCTAGCTTACATATT
* *
84797227 TATAGACTGGTTAACTTTGCATGATGTTATTGTAAACTGTAGACGAAAGCATATTGTATTGAAAT
1 TATAGACTGGTTAACTTTACATGATGCTATTGTAAACTGTAGACGAAAGCATATTGTATTGAAAT
*
84797292 GTCAAAATGGTGAAAGGATTCGAATTGAATAAGACATATTGGATGGTACATCTAATGTTATCTCA
66 GTCAAAATGGTGAAAGGATTCGAATTGAATAAGACATATTGGATGGTACATCTAATGTTATCCCA
*
84797357 GCTATGATGACACAACAATATATTCGAAAGGGTTATGAAGCGTATCTAGCTTACATATT
131 GCTATGATGACACAACAATATATTCGAAAGGGTTATGAAGCATATCTAGCTTACATATT
84797416 T
1 T
84797417 GATTCCAGAG
Statistics
Matches: 184, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
189 184 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.33
Consensus pattern (189 bp):
TATAGACTGGTTAACTTTACATGATGCTATTGTAAACTGTAGACGAAAGCATATTGTATTGAAAT
GTCAAAATGGTGAAAGGATTCGAATTGAATAAGACATATTGGATGGTACATCTAATGTTATCCCA
GCTATGATGACACAACAATATATTCGAAAGGGTTATGAAGCATATCTAGCTTACATATT
Found at i:84799370 original size:40 final size:40
Alignment explanation
Indices: 84799178--84799363 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
84799168 TTGAATGATG
* * * * *
84799178 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* ** *
84799218 TCCAGACTAAGAT-CCGAAGACATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
84799258 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
84799298 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
84799339 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
84799364 AACGAGTAGC
Statistics
Matches: 129, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 118 0.91
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:84799370 original size:80 final size:79
Alignment explanation
Indices: 84799231--84799396 Score: 219
Period size: 80 Copynumber: 2.1 Consensus size: 79
84799221 AGACTAAGAT
* * **
84799231 CCGAAGACATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCT
*
84799295 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAATC
*
84799311 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCT
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCT
* *
84799375 ATATCCGGTTAAATT
65 AAATCCGGTTAAATC
84799390 CCGAAGG
1 CCGAAGG
84799397 TACGTGATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
79 16 0.21
80 58 0.76
81 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAATC
Found at i:84801584 original size:40 final size:40
Alignment explanation
Indices: 84801526--84801610 Score: 134
Period size: 40 Copynumber: 2.1 Consensus size: 40
84801516 GGATCAACTG
*
84801526 AACACGCCAAACAGAAGCTCACAAGAGCTAATCCAACCGA
1 AACACGCCAAACAAAAGCTCACAAGAGCTAATCCAACCGA
* * *
84801566 AACACGCCAAACAAAAGCTTATAAGAGGTAATCCAACCGA
1 AACACGCCAAACAAAAGCTCACAAGAGCTAATCCAACCGA
84801606 AACAC
1 AACAC
84801611 ACCAGACAGA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.47, C:0.29, G:0.14, T:0.09
Consensus pattern (40 bp):
AACACGCCAAACAAAAGCTCACAAGAGCTAATCCAACCGA
Found at i:84814985 original size:9 final size:9
Alignment explanation
Indices: 84814971--84815002 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
84814961 TAGAAACCTT
84814971 ATATTTTAC
1 ATATTTTAC
84814980 ATATTTTAC
1 ATATTTTAC
84814989 ATATTTTAC
1 ATATTTTAC
84814998 A-ATTT
1 ATATTT
84815003 AATCCATTCG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 4 0.17
9 19 0.83
ACGTcount: A:0.34, C:0.09, G:0.00, T:0.56
Consensus pattern (9 bp):
ATATTTTAC
Found at i:84817631 original size:26 final size:26
Alignment explanation
Indices: 84817601--84817676 Score: 89
Period size: 26 Copynumber: 2.9 Consensus size: 26
84817591 ACACCAATAT
*
84817601 CGCAGCAAAGCTGCCAATAATAGTAA
1 CGCAGCAAAGCTGCCAATAACAGTAA
* *
84817627 CGCAGCAAGGCTGCCAGTAACAGTAA
1 CGCAGCAAAGCTGCCAATAACAGTAA
* * * *
84817653 CGTAGCAAAACCGCCAGTAACAGT
1 CGCAGCAAAGCTGCCAATAACAGT
84817677 GTATGTGGCA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.38, C:0.26, G:0.22, T:0.13
Consensus pattern (26 bp):
CGCAGCAAAGCTGCCAATAACAGTAA
Found at i:84817884 original size:27 final size:26
Alignment explanation
Indices: 84817852--84818180 Score: 385
Period size: 27 Copynumber: 12.2 Consensus size: 26
84817842 GGTATAATAG
* * *
84817852 TCATTTTACCTTTCAGGGGTATTTTGG
1 TCATTTTACCCTTC-GGGGTATTTCGA
*
84817879 TTATTTTACCCATT-GAGGGTATTTCGA
1 TCATTTTACCC-TTCG-GGGTATTTCGA
*
84817906 TCATTTTACCCTTCGAGGGTATTTTGA
1 TCATTTTACCCTTCG-GGGTATTTCGA
84817933 TCATTTTACCCTTCGGGGGTATTTCGA
1 TCATTTTACCCTTC-GGGGTATTTCGA
* *
84817960 TCATTTTACCATTCAGGGTATTTCGA
1 TCATTTTACCCTTCGGGGTATTTCGA
*
84817986 TCATTTTACCCTTCGAGGCTATTTC-A
1 TCATTTTACCCTTCG-GGGTATTTCGA
84818012 GTCATTTTACCCTTCAGGGGTATTTCGA
1 -TCATTTTACCCTTC-GGGGTATTTCGA
*
84818040 TCATTTTACCCTTCTGGGGTATTTTGA
1 TCATTTTACCCTTC-GGGGTATTTCGA
84818067 TCATTTTACCCTTCGAGGGTATTTCGA
1 TCATTTTACCCTTCG-GGGTATTTCGA
*
84818094 TCATTTTACCATTCGTGGGTATTTCGA
1 TCATTTTACCCTTCG-GGGTATTTCGA
* * *
84818121 TTATTTTACCCTTCGGGGGTATTTTGG
1 TCATTTTACCCTTC-GGGGTATTTCGA
*
84818148 TCATTTTAACCTTCGAGGGTATTTC-A
1 TCATTTTACCCTTCG-GGGTATTTCGA
84818174 GTCATTT
1 -TCATTT
84818181 GCGAACGAAT
Statistics
Matches: 264, Mismatches: 26, Indels: 24
0.84 0.08 0.08
Matches are distributed among these distances:
26 30 0.11
27 228 0.86
28 6 0.02
ACGTcount: A:0.18, C:0.19, G:0.19, T:0.44
Consensus pattern (26 bp):
TCATTTTACCCTTCGGGGTATTTCGA
Found at i:84818172 original size:81 final size:81
Alignment explanation
Indices: 84817850--84818180 Score: 440
Period size: 81 Copynumber: 4.1 Consensus size: 81
84817840 GGGGTATAAT
* * * *
84817850 AGTCATTTTACCTTTCAGGGGTATTTTGGTTATTTTACCCATT-GAGGGTATTTCGATCATTTTA
1 AGTCATTTTACCCTTCAGGGGTATTTCGATCATTTTACCC-TTCGAGGGTATTTCGATCATTTTA
84817914 CCCTTCGAGGGTATTT-
65 CCCTTCGAGGGTATTTC
* * *
84817930 TGATCATTTTACCCTTCGGGGGTATTTCGATCATTTTACCATTC-AGGGTATTTCGATCATTTTA
1 AG-TCATTTTACCCTTCAGGGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCGATCATTTTA
*
84817994 CCCTTCGAGGCTATTTC
65 CCCTTCGAGGGTATTTC
*
84818011 AGTCATTTTACCCTTCAGGGGTATTTCGATCATTTTACCCTTCTG-GGGTATTTTGATCATTTTA
1 AGTCATTTTACCCTTCAGGGGTATTTCGATCATTTTACCCTTC-GAGGGTATTTCGATCATTTTA
84818075 CCCTTCGAGGGTATTTC
65 CCCTTCGAGGGTATTTC
* * * * *
84818092 -GATCATTTTACCATTC-GTGGGTATTTCGATTATTTTACCCTTCGGGGGTATTTTGGTCATTTT
1 AG-TCATTTTACCCTTCAG-GGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCGATCATTTT
*
84818155 AACCTTCGAGGGTATTTC
64 ACCCTTCGAGGGTATTTC
84818173 AGTCATTT
1 AGTCATTT
84818181 GCGAACGAAT
Statistics
Matches: 225, Mismatches: 17, Indels: 17
0.87 0.07 0.07
Matches are distributed among these distances:
80 80 0.36
81 144 0.64
82 1 0.00
ACGTcount: A:0.18, C:0.19, G:0.19, T:0.44
Consensus pattern (81 bp):
AGTCATTTTACCCTTCAGGGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCGATCATTTTAC
CCTTCGAGGGTATTTC
Found at i:84820368 original size:33 final size:33
Alignment explanation
Indices: 84820326--84820392 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
84820316 GGGGATGATA
84820326 TTCGGCCTAGGTAGATTTTGTGTTAATGCCATT
1 TTCGGCCTAGGTAGATTTTGTGTTAATGCCATT
*
84820359 TTCGGCCTAGGTGGATTTTGTGTTAATGCCATT
1 TTCGGCCTAGGTAGATTTTGTGTTAATGCCATT
84820392 T
1 T
84820393 CATGCTAAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.16, C:0.15, G:0.25, T:0.43
Consensus pattern (33 bp):
TTCGGCCTAGGTAGATTTTGTGTTAATGCCATT
Found at i:84821523 original size:40 final size:40
Alignment explanation
Indices: 84821253--84821508 Score: 324
Period size: 40 Copynumber: 6.5 Consensus size: 40
84821243 TTGAATGATG
* * * *
84821253 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
84821293 TCCGGACAAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
84821333 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
84821372 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
84821411 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
84821451 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
84821492 -CCGGGCTATGTCCCGAA
1 TCCGGGCTAAGTCCCGAA
84821509 TGCGTTTGAA
Statistics
Matches: 195, Mismatches: 16, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
39 74 0.38
40 111 0.57
41 10 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:84821523 original size:80 final size:78
Alignment explanation
Indices: 84821254--84821549 Score: 296
Period size: 79 Copynumber: 3.7 Consensus size: 78
84821244 TGAATGATGT
* * * ***
84821254 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACAAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGT-ACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* *
84821317 TGTGCGAGATACTAATT
63 TGTGCGAGTTACTAA-A
* *
84821334 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
84821397 TGCGAGTTACTAAA
65 TGCGAGTTACTAAA
* *
84821411 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATT
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAATCCGGGTTAAGTCCCGAAGGCATTT
84821476 GTGCGAGTTACTATAA
64 GTGCGAGTTACTA-AA
* * * ** * * *
84821492 CCGGGCTATGTCCCGAATGCGTTTGAACGAGTAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTAAATCCGGGTTAAGTCCCGAAGG
84821550 TACGTGATTT
Statistics
Matches: 186, Mismatches: 22, Indels: 17
0.83 0.10 0.08
Matches are distributed among these distances:
78 34 0.18
79 75 0.40
80 75 0.40
81 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
GCGAGTTACTAAA
Found at i:84824558 original size:25 final size:25
Alignment explanation
Indices: 84824528--84824581 Score: 83
Period size: 26 Copynumber: 2.2 Consensus size: 25
84824518 GTGGTTATTT
*
84824528 AACTCTTAG-GAGTTGCCTACCTTGA
1 AACTCTAAGCGAGTTGCCTACCTT-A
84824553 AACTCTAAGCGAGTTGCCTACCTTA
1 AACTCTAAGCGAGTTGCCTACCTTA
84824578 AACT
1 AACT
84824582 TACTGGAACT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 13 0.48
26 14 0.52
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.30
Consensus pattern (25 bp):
AACTCTAAGCGAGTTGCCTACCTTA
Found at i:84826283 original size:29 final size:29
Alignment explanation
Indices: 84826216--84826287 Score: 76
Period size: 29 Copynumber: 2.4 Consensus size: 29
84826206 TTTAAATATA
*
84826216 AAATATTATGTATTTAAATTTAAATGTTTT
1 AAATATTA-ATATTTAAATTTAAATGTTTT
* *
84826246 ATATTTTAATATTTAAA-TTAAAT-TTTAT
1 AAATATTAATATTTAAATTTAAATGTTT-T
84826274 AAATAATTAATATT
1 AAAT-ATTAATATT
84826288 AATGGTTTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
27 3 0.09
28 10 0.29
29 16 0.46
30 6 0.17
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (29 bp):
AAATATTAATATTTAAATTTAAATGTTTT
Found at i:84826689 original size:21 final size:21
Alignment explanation
Indices: 84826640--84826698 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
84826630 AGAATAAATC
*
84826640 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
84826660 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
84826682 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
84826699 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:84827991 original size:36 final size:35
Alignment explanation
Indices: 84827932--84827999 Score: 93
Period size: 35 Copynumber: 1.9 Consensus size: 35
84827922 ACCATCGCAT
*
84827932 AGAAAAAAAAAGTTGAAATATTATAGGTAAAAACA
1 AGAAAAAAAAAGTGGAAATATTATAGGTAAAAACA
*
84827967 AGAAAAAAAAAGTGGAGAGA-ATTATGGGTAAAA
1 AGAAAAAAAAAGTGGA-A-ATATTATAGGTAAAA
84828000 GTAAACAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
35 15 0.52
36 13 0.45
37 1 0.03
ACGTcount: A:0.60, C:0.01, G:0.21, T:0.18
Consensus pattern (35 bp):
AGAAAAAAAAAGTGGAAATATTATAGGTAAAAACA
Found at i:84831708 original size:17 final size:17
Alignment explanation
Indices: 84831669--84831716 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
84831659 ATATGTTTAA
84831669 TAAAAATATAAAAATTAT
1 TAAAAAT-TAAAAATTAT
*
84831687 GAAAAATTAAAAATCT-T
1 TAAAAATTAAAAAT-TAT
*
84831704 TAAAATTTAAAAA
1 TAAAAATTAAAAA
84831717 CAAAAATAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
17 19 0.73
18 7 0.27
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (17 bp):
TAAAAATTAAAAATTAT
Found at i:84832638 original size:27 final size:27
Alignment explanation
Indices: 84832599--84832654 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
84832589 TCCGTAACTA
*
84832599 TTTACGTATTTGGGTTTGAACTTTTTT
1 TTTACGTACTTGGGTTTGAACTTTTTT
84832626 TTTACGTACTTGGGTTTGAACTTTTTT
1 TTTACGTACTTGGGTTTGAACTTTTTT
84832653 TT
1 TT
84832655 CAAGTTAGTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.14, C:0.09, G:0.18, T:0.59
Consensus pattern (27 bp):
TTTACGTACTTGGGTTTGAACTTTTTT
Found at i:84834983 original size:20 final size:20
Alignment explanation
Indices: 84834955--84835000 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
84834945 TTTGATATTT
* *
84834955 GAAAAGAAAAAGGAAATGAA
1 GAAAGGAAAAAGGAAAGGAA
84834975 GAAAGGAAAAAGGAAAGGAA
1 GAAAGGAAAAAGGAAAGGAA
*
84834995 AAAAGG
1 GAAAGG
84835001 GACAGGGTGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.67, C:0.00, G:0.30, T:0.02
Consensus pattern (20 bp):
GAAAGGAAAAAGGAAAGGAA
Found at i:84839329 original size:25 final size:25
Alignment explanation
Indices: 84839301--84839348 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
84839291 ATAAATGATA
84839301 AAATTTGTTAACT-AGATTTGATTCG
1 AAATTTGTTAACTCA-ATTTGATTCG
* *
84839326 AAATTTTTTGACTCAATTTGATT
1 AAATTTGTTAACTCAATTTGATT
84839349 TAAAAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 19 0.95
26 1 0.05
ACGTcount: A:0.31, C:0.08, G:0.12, T:0.48
Consensus pattern (25 bp):
AAATTTGTTAACTCAATTTGATTCG
Found at i:84839937 original size:65 final size:64
Alignment explanation
Indices: 84839855--84839985 Score: 235
Period size: 65 Copynumber: 2.0 Consensus size: 64
84839845 TTAACCAAAT
*
84839855 TGTGGGGGGGGGGGGGACTGTTATTTTTCAGAAAAAATGATTGCTTAAAAGTAACATTGGCTTA
1 TGTGGGGGGGGGGGGGACTGTTATTTGTCAGAAAAAATGATTGCTTAAAAGTAACATTGGCTTA
*
84839919 NTGTGGGGGGGGGGGGGACTGTTATTTGTCAGAAACAATGATTGCTTAAAAGTAACATTGGCTTA
1 -TGTGGGGGGGGGGGGGACTGTTATTTGTCAGAAAAAATGATTGCTTAAAAGTAACATTGGCTTA
84839984 TG
1 TG
84839986 ATAGGGTCCC
Statistics
Matches: 64, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
64 2 0.03
65 62 0.97
ACGTcount: A:0.27, C:0.08, G:0.34, T:0.31
Consensus pattern (64 bp):
TGTGGGGGGGGGGGGGACTGTTATTTGTCAGAAAAAATGATTGCTTAAAAGTAACATTGGCTTA
Found at i:84842212 original size:73 final size:73
Alignment explanation
Indices: 84842127--84842345 Score: 438
Period size: 73 Copynumber: 3.0 Consensus size: 73
84842117 TATATATAAA
84842127 AAAAACATTTAATTTATTTTTCTTAAGATATAAACCCGATTTGTATTAAATTATTTAATTGTAAT
1 AAAAACATTTAATTTATTTTTCTTAAGATATAAACCCGATTTGTATTAAATTATTTAATTGTAAT
84842192 AGATATTT
66 AGATATTT
84842200 AAAAACATTTAATTTATTTTTCTTAAGATATAAACCCGATTTGTATTAAATTATTTAATTGTAAT
1 AAAAACATTTAATTTATTTTTCTTAAGATATAAACCCGATTTGTATTAAATTATTTAATTGTAAT
84842265 AGATATTT
66 AGATATTT
84842273 AAAAACATTTAATTTATTTTTCTTAAGATATAAACCCGATTTGTATTAAATTATTTAATTGTAAT
1 AAAAACATTTAATTTATTTTTCTTAAGATATAAACCCGATTTGTATTAAATTATTTAATTGTAAT
84842338 AGATATTT
66 AGATATTT
84842346 TTACTTTTTT
Statistics
Matches: 146, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 146 1.00
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.47
Consensus pattern (73 bp):
AAAAACATTTAATTTATTTTTCTTAAGATATAAACCCGATTTGTATTAAATTATTTAATTGTAAT
AGATATTT
Found at i:84843920 original size:20 final size:21
Alignment explanation
Indices: 84843889--84843931 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
84843879 TAAAAAATTC
*
84843889 AAATATTAAAAATTAGAAAAA
1 AAATATTAAAAATCAGAAAAA
*
84843910 AAATA-TAAAAATCATAAAAA
1 AAATATTAAAAATCAGAAAAA
84843930 AA
1 AA
84843932 TAAAAATTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.21
Consensus pattern (21 bp):
AAATATTAAAAATCAGAAAAA
Found at i:84843990 original size:20 final size:20
Alignment explanation
Indices: 84843906--84843996 Score: 59
Period size: 20 Copynumber: 4.8 Consensus size: 20
84843896 AAAAATTAGA
*
84843906 AAAAAAAT-ATAAAA-ATCAT
1 AAAAAAATAATAAAATAT-GT
84843925 AAAAAAAT-A-AAAAT-TGT
1 AAAAAAATAATAAAATATGT
** * *
84843942 -AAAATTTTATAAAATATTT
1 AAAAAAATAATAAAATATGT
84843961 AAAAAAATAATAAAATATGT
1 AAAAAAATAATAAAATATGT
* * *
84843981 AGAAATATAAAAAAAT
1 AAAAAAATAATAAAAT
84843997 TATAAAATTT
Statistics
Matches: 56, Mismatches: 11, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
16 5 0.09
17 2 0.04
18 10 0.18
19 11 0.20
20 28 0.50
ACGTcount: A:0.68, C:0.01, G:0.03, T:0.27
Consensus pattern (20 bp):
AAAAAAATAATAAAATATGT
Found at i:84849594 original size:17 final size:18
Alignment explanation
Indices: 84849567--84849603 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
84849557 TTTAACCATT
*
84849567 TAAATAATAAATTATATA
1 TAAATAATAAATAATATA
84849585 TAAA-AATAAATAATATA
1 TAAATAATAAATAATATA
84849602 TA
1 TA
84849604 TTAAGTGAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
TAAATAATAAATAATATA
Found at i:84871199 original size:19 final size:20
Alignment explanation
Indices: 84871155--84871199 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
84871145 GTGAAATGAT
*
84871155 AGTAAAATAGTGAAAAAACA
1 AGTAAAATAGTCAAAAAACA
84871175 AG-AAAATAG-CAACAAAAC-
1 AGTAAAATAGTCAA-AAAACA
84871193 AGTAAAA
1 AGTAAAA
84871200 ATAAGAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
18 4 0.18
19 16 0.73
20 2 0.09
ACGTcount: A:0.67, C:0.09, G:0.13, T:0.11
Consensus pattern (20 bp):
AGTAAAATAGTCAAAAAACA
Found at i:84876329 original size:82 final size:82
Alignment explanation
Indices: 84876192--84876354 Score: 317
Period size: 82 Copynumber: 2.0 Consensus size: 82
84876182 TGGCAGACTA
84876192 AATTCGTCCAATTCTATAATTTCCTGTGGAAATCTCAGCAAAAATTAACTCTTGAACTTCATGAT
1 AATTCGTCCAATTCTATAATTTCCTGTGGAAATCTCAGCAAAAATTAACTCTTGAACTTCATGAT
84876257 AAAAGTAAAGAACCATG
66 AAAAGTAAAGAACCATG
*
84876274 AATTCGTTCAATTCTATAATTTCCTGTGGAAATCTCAGCAAAAATTAACTCTTGAACTTCATGAT
1 AATTCGTCCAATTCTATAATTTCCTGTGGAAATCTCAGCAAAAATTAACTCTTGAACTTCATGAT
84876339 AAAAGTAAAGAACCAT
66 AAAAGTAAAGAACCAT
84876355 AATCCAGGGA
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 80 1.00
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.31
Consensus pattern (82 bp):
AATTCGTCCAATTCTATAATTTCCTGTGGAAATCTCAGCAAAAATTAACTCTTGAACTTCATGAT
AAAAGTAAAGAACCATG
Found at i:84879301 original size:25 final size:24
Alignment explanation
Indices: 84879273--84879319 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
84879263 GAAAATAAAA
* *
84879273 TAAATTAGTTAATTTATATGATATT
1 TAAATAAGTTAATATA-ATGATATT
*
84879298 TAAATAATTTAATATAATGATA
1 TAAATAAGTTAATATAATGATA
84879320 CATAAAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 6 0.32
25 13 0.68
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (24 bp):
TAAATAAGTTAATATAATGATATT
Found at i:84879412 original size:27 final size:27
Alignment explanation
Indices: 84879353--84879408 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
84879343 CAAGTAATTA
* *
84879353 ATATAAATTATTTATAAAATTAATAAT
1 ATATAAAATATTTATAAAATTAATAAC
* *
84879380 ATATAAAATATTTTTAAAATT-TTAAC
1 ATATAAAATATTTATAAAATTAATAAC
84879406 ATA
1 ATA
84879409 ATAATAAGTG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 6 0.24
27 19 0.76
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.45
Consensus pattern (27 bp):
ATATAAAATATTTATAAAATTAATAAC
Found at i:84884590 original size:16 final size:16
Alignment explanation
Indices: 84884569--84884599 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
84884559 GTATCATGAA
*
84884569 TCAATTGAATATTAAT
1 TCAATTGAAAATTAAT
84884585 TCAATTGAAAATTAA
1 TCAATTGAAAATTAA
84884600 CTAAAAAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (16 bp):
TCAATTGAAAATTAAT
Found at i:84888329 original size:91 final size:91
Alignment explanation
Indices: 84888174--84888357 Score: 368
Period size: 91 Copynumber: 2.0 Consensus size: 91
84888164 TCTATGGACT
84888174 TTATTTACAAATTTACTCATCTAAAAGGTGATGGGACTAAAATGCTAAACAAAAATAATTATATT
1 TTATTTACAAATTTACTCATCTAAAAGGTGATGGGACTAAAATGCTAAACAAAAATAATTATATT
84888239 TGGTCTCAGGATAGATGATATATTAC
66 TGGTCTCAGGATAGATGATATATTAC
84888265 TTATTTACAAATTTACTCATCTAAAAGGTGATGGGACTAAAATGCTAAACAAAAATAATTATATT
1 TTATTTACAAATTTACTCATCTAAAAGGTGATGGGACTAAAATGCTAAACAAAAATAATTATATT
84888330 TGGTCTCAGGATAGATGATATATTAC
66 TGGTCTCAGGATAGATGATATATTAC
84888356 TT
1 TT
84888358 GTTCATTTTT
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
91 93 1.00
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.35
Consensus pattern (91 bp):
TTATTTACAAATTTACTCATCTAAAAGGTGATGGGACTAAAATGCTAAACAAAAATAATTATATT
TGGTCTCAGGATAGATGATATATTAC
Found at i:84897442 original size:57 final size:57
Alignment explanation
Indices: 84897354--84897467 Score: 219
Period size: 57 Copynumber: 2.0 Consensus size: 57
84897344 TCTCTGGTTC
*
84897354 CCTTCCTGGATTCAGCGGGCGATTGTTGAGGTCGGGTCGGGTCCCAGGGCTGGCCGA
1 CCTTCCTGGATTCAGCGGGCGATTGTTGAGGTCGGGTCGGGTCCCACGGCTGGCCGA
84897411 CCTTCCTGGATTCAGCGGGCGATTGTTGAGGTCGGGTCGGGTCCCACGGCTGGCCGA
1 CCTTCCTGGATTCAGCGGGCGATTGTTGAGGTCGGGTCGGGTCCCACGGCTGGCCGA
84897468 AGAGCGTCCC
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.11, C:0.27, G:0.39, T:0.23
Consensus pattern (57 bp):
CCTTCCTGGATTCAGCGGGCGATTGTTGAGGTCGGGTCGGGTCCCACGGCTGGCCGA
Found at i:84903642 original size:20 final size:20
Alignment explanation
Indices: 84903617--84903657 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
84903607 CTCATTTGAA
84903617 ACATTTGCTAACCTTTTATT
1 ACATTTGCTAACCTTTTATT
84903637 ACATTTGCTAACCTTTTATT
1 ACATTTGCTAACCTTTTATT
84903657 A
1 A
84903658 GGTGTGGCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.27, C:0.20, G:0.05, T:0.49
Consensus pattern (20 bp):
ACATTTGCTAACCTTTTATT
Found at i:84906347 original size:26 final size:27
Alignment explanation
Indices: 84906301--84906352 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 27
84906291 AATTAATTTG
*
84906301 TAAAATATATAATTATAAATG-TTTAT
1 TAAAATATATAATTAGAAATGATTTAT
*
84906327 TAAAA-ATCTAATTAGACAATGATTTA
1 TAAAATATATAATTAGA-AATGATTTA
84906353 ATCACTCTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 9 0.41
26 9 0.41
27 4 0.18
ACGTcount: A:0.50, C:0.04, G:0.06, T:0.40
Consensus pattern (27 bp):
TAAAATATATAATTAGAAATGATTTAT
Found at i:84910753 original size:20 final size:20
Alignment explanation
Indices: 84910714--84910761 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
84910704 ATATTTTTAA
*
84910714 GAATTTTTAGAATATTTTTT
1 GAATTTTTAGAATATATTTT
*
84910734 GAAATTTTTATAA-ATATTTT
1 G-AATTTTTAGAATATATTTT
84910754 GAATTTTT
1 GAATTTTT
84910762 TTTGTAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 7 0.28
20 8 0.32
21 10 0.40
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.58
Consensus pattern (20 bp):
GAATTTTTAGAATATATTTT
Found at i:84910763 original size:31 final size:31
Alignment explanation
Indices: 84910706--84910773 Score: 86
Period size: 31 Copynumber: 2.2 Consensus size: 31
84910696 AGCTTTTTAT
84910706 ATTTTTAAGAATTTTTAGAATATTTTTTGAA
1 ATTTTTAAGAATTTTTAGAATATTTTTTGAA
* *
84910737 ATTTTTATA-AATATTTT-GAATTTTTTTTGTA
1 ATTTTTA-AGAAT-TTTTAGAATATTTTTTGAA
84910768 ATTTTT
1 ATTTTT
84910774 GTGGATAGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
31 28 0.85
32 5 0.15
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.62
Consensus pattern (31 bp):
ATTTTTAAGAATTTTTAGAATATTTTTTGAA
Found at i:84918912 original size:19 final size:20
Alignment explanation
Indices: 84918890--84918934 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
84918880 AGATGATAAA
84918890 AGTA-GAAAATGTGAAAAGT
1 AGTATGAAAATGTGAAAAGT
**
84918909 AGTATGTTAATGTGAAAAGT
1 AGTATGAAAATGTGAAAAGT
*
84918929 GGTATG
1 AGTATG
84918935 TTTTTCTTAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.42, C:0.00, G:0.29, T:0.29
Consensus pattern (20 bp):
AGTATGAAAATGTGAAAAGT
Found at i:84918922 original size:20 final size:20
Alignment explanation
Indices: 84918897--84918936 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
84918887 AAAAGTAGAA
84918897 AATGTGAAAAGTAGTATGTT
1 AATGTGAAAAGTAGTATGTT
*
84918917 AATGTGAAAAGTGGTATGTT
1 AATGTGAAAAGTAGTATGTT
84918937 TTTCTTAGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.28, T:0.35
Consensus pattern (20 bp):
AATGTGAAAAGTAGTATGTT
Found at i:84919288 original size:26 final size:26
Alignment explanation
Indices: 84919257--84919308 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
84919247 AAAAGAGTAT
*
84919257 AGGAACCTTGTACATATTTAAACCTA
1 AGGAACCTTGTACATATTGAAACCTA
84919283 AGGAACCTTGTACATATTGAAACCTA
1 AGGAACCTTGTACATATTGAAACCTA
84919309 CTTTCTTACC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.29
Consensus pattern (26 bp):
AGGAACCTTGTACATATTGAAACCTA
Found at i:84931794 original size:16 final size:16
Alignment explanation
Indices: 84931773--84931814 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
84931763 GCTTATTATT
84931773 TAAGAA-ATAATAATTA
1 TAAGAATATAATAA-TA
*
84931789 TAAGAATTTAATAATA
1 TAAGAATATAATAATA
*
84931805 TAATAATATA
1 TAAGAATATA
84931815 TATGTTATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 16 0.73
17 6 0.27
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.36
Consensus pattern (16 bp):
TAAGAATATAATAATA
Found at i:84934623 original size:16 final size:16
Alignment explanation
Indices: 84934602--84934632 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
84934592 TTTATTATTT
84934602 TATTAACATAATATAA
1 TATTAACATAATATAA
*
84934618 TATTAATATAATATA
1 TATTAACATAATATA
84934633 TTAAAATATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
TATTAACATAATATAA
Found at i:84938672 original size:29 final size:29
Alignment explanation
Indices: 84938639--84938697 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
84938629 AGGAAGAAAG
84938639 TCTGTTTTTGCTTCACTTTCCTAACTTTT
1 TCTGTTTTTGCTTCACTTTCCTAACTTTT
84938668 TCTGTTTTTGCTTCACTTTCCTAACTTTT
1 TCTGTTTTTGCTTCACTTTCCTAACTTTT
84938697 T
1 T
84938698 TTCCTGGTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.10, C:0.24, G:0.07, T:0.59
Consensus pattern (29 bp):
TCTGTTTTTGCTTCACTTTCCTAACTTTT
Found at i:84938772 original size:15 final size:15
Alignment explanation
Indices: 84938734--84938781 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
84938724 TCTTATCTTG
*
84938734 AAACCCTAAACCAT-
1 AAACCCTAAACCCTA
**
84938748 AAACTTTAAACCCTA
1 AAACCCTAAACCCTA
*
84938763 AAACCCTAAACCCAA
1 AAACCCTAAACCCTA
84938778 AAAC
1 AAAC
84938782 TTTAATCATA
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
14 11 0.41
15 16 0.59
ACGTcount: A:0.52, C:0.33, G:0.00, T:0.15
Consensus pattern (15 bp):
AAACCCTAAACCCTA
Found at i:84938793 original size:29 final size:29
Alignment explanation
Indices: 84938734--84938794 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
84938724 TCTTATCTTG
* *
84938734 AAACCCTAAACCATAAACTTTAAACCCTA
1 AAACCCTAAACCAAAAACTTTAAACCATA
*
84938763 AAACCCTAAACCCAAAAACTTT-AATCATA
1 AAACCCTAAA-CCAAAAACTTTAAACCATA
84938792 AAA
1 AAA
84938795 TCTAACTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 18 0.64
30 10 0.36
ACGTcount: A:0.52, C:0.28, G:0.00, T:0.20
Consensus pattern (29 bp):
AAACCCTAAACCAAAAACTTTAAACCATA
Found at i:84944250 original size:42 final size:42
Alignment explanation
Indices: 84944181--84944285 Score: 122
Period size: 42 Copynumber: 2.5 Consensus size: 42
84944171 TGTTAAGTTC
* * *
84944181 CACTTTGCGTGTTTCTTTAAAAACATGAGCTTTTGTGAACCT
1 CACTCTGCGTGCTCCTTTAAAAACATGAGCTTTTGTGAACCT
* * *
84944223 CACTCTGCGTGCTCCTTTGAAAGCATGAGCTTTTGTGAGCCT
1 CACTCTGCGTGCTCCTTTAAAAACATGAGCTTTTGTGAACCT
* **
84944265 CATTCTGCACGCTCC-TTAAAA
1 CACTCTGCGTGCTCCTTTAAAA
84944286 GTATGGGTTT
Statistics
Matches: 53, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
41 5 0.09
42 48 0.91
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (42 bp):
CACTCTGCGTGCTCCTTTAAAAACATGAGCTTTTGTGAACCT
Found at i:84945908 original size:40 final size:40
Alignment explanation
Indices: 84945848--84945927 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
84945838 AATTCATAAT
*
84945848 AAGCTTCAGAAATTATCCAAAATCATCTACCTCATCTTCA
1 AAGCGTCAGAAATTATCCAAAATCATCTACCTCATCTTCA
* *
84945888 AAGCGTCAGAACTTATCCAAAATCATTTACCTCATCTTCA
1 AAGCGTCAGAAATTATCCAAAATCATCTACCTCATCTTCA
84945928 TCTTGCTTGC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.36, C:0.28, G:0.06, T:0.30
Consensus pattern (40 bp):
AAGCGTCAGAAATTATCCAAAATCATCTACCTCATCTTCA
Found at i:84951387 original size:20 final size:20
Alignment explanation
Indices: 84951355--84951392 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
84951345 ACACATGGTG
84951355 TATAGGCTGAAAA-AAGCCT
1 TATAGGCTGAAAATAAGCCT
*
84951374 TATATGGCTTAAAATAAGC
1 TATA-GGCTGAAAATAAGC
84951393 ACTTCGAGCT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 8 0.50
21 4 0.25
ACGTcount: A:0.42, C:0.13, G:0.18, T:0.26
Consensus pattern (20 bp):
TATAGGCTGAAAATAAGCCT
Found at i:84954002 original size:20 final size:20
Alignment explanation
Indices: 84953977--84954017 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
84953967 ACACTCTAAA
84953977 ATGAGTTCAAATGTTGACAT
1 ATGAGTTCAAATGTTGACAT
84953997 ATGAGTTCAAATGTTGACAT
1 ATGAGTTCAAATGTTGACAT
84954017 A
1 A
84954018 CATGTATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.34
Consensus pattern (20 bp):
ATGAGTTCAAATGTTGACAT
Found at i:84954228 original size:103 final size:103
Alignment explanation
Indices: 84954111--84954304 Score: 289
Period size: 103 Copynumber: 1.9 Consensus size: 103
84954101 AAGCAGCAAC
* * * * *
84954111 AATACAAGCTAAGCAGCAGTAAAAGTAAGTTGCCTTTAAGGTCCAAAAACCAATGCCTACCTATG
1 AATACAAACTAAGCAGCAGTAAAAGCAAGTTGCCTTTAAAGTCCAAAAAACAATGCCTACCGATG
84954176 TATGCTTATAAAAGCAAGCAGGAGCAACAATTGTAACT
66 TATGCTTATAAAAGCAAGCAGGAGCAACAATTGTAACT
* * *
84954214 AATACAAACTAAGCAGCAGTTAAAGCAAGTTGCCTTTAAAGTTCAAAAAACAATGCCTGCCGATG
1 AATACAAACTAAGCAGCAGTAAAAGCAAGTTGCCTTTAAAGTCCAAAAAACAATGCCTACCGATG
* * *
84954279 TATGCTTTTAGAAGCAAGCAGTAGCA
66 TATGCTTATAAAAGCAAGCAGGAGCA
84954305 GAAAGAACAA
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
103 80 1.00
ACGTcount: A:0.40, C:0.19, G:0.18, T:0.23
Consensus pattern (103 bp):
AATACAAACTAAGCAGCAGTAAAAGCAAGTTGCCTTTAAAGTCCAAAAAACAATGCCTACCGATG
TATGCTTATAAAAGCAAGCAGGAGCAACAATTGTAACT
Found at i:84963339 original size:13 final size:12
Alignment explanation
Indices: 84963316--84963378 Score: 55
Period size: 12 Copynumber: 5.4 Consensus size: 12
84963306 AATAATTTTA
84963316 TATTAAAATTAT
1 TATTAAAATTAT
84963328 TATT-AAA-TAT
1 TATTAAAATTAT
84963338 TATTAATAATTA-
1 TATTAA-AATTAT
*
84963350 TATTAAGAA-TGT
1 TATTAA-AATTAT
84963362 TATT-AAATTAT
1 TATTAAAATTAT
84963373 ATATTA
1 -TATTA
84963379 TTTTATTAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 13
0.72 0.05 0.23
Matches are distributed among these distances:
10 9 0.22
11 8 0.20
12 22 0.54
13 2 0.05
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (12 bp):
TATTAAAATTAT
Found at i:84963343 original size:22 final size:23
Alignment explanation
Indices: 84963316--84963378 Score: 69
Period size: 22 Copynumber: 2.7 Consensus size: 23
84963306 AATAATTTTA
84963316 TATTAAAATTATTATTA-AATAT
1 TATTAAAATTATTATTAGAATAT
*
84963338 TATTAATAATTA-TATTAAGAATGT
1 TATTAA-AATTATTATT-AGAATAT
84963362 TATT-AAATTATATATTA
1 TATTAAAATTAT-TATTA
84963379 TTTTATTAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
22 15 0.43
23 8 0.23
24 12 0.34
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (23 bp):
TATTAAAATTATTATTAGAATAT
Found at i:84963492 original size:25 final size:26
Alignment explanation
Indices: 84963442--84963492 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
84963432 ATTTTTATTT
*
84963442 TTATTAAAATATATTGAACAATAATC
1 TTATTAAAATATAATGAACAATAATC
*
84963468 TTATTAAAATTTAAT-AACAATAATC
1 TTATTAAAATATAATGAACAATAATC
84963493 ATCTATCTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.51, C:0.08, G:0.02, T:0.39
Consensus pattern (26 bp):
TTATTAAAATATAATGAACAATAATC
Found at i:84963626 original size:44 final size:46
Alignment explanation
Indices: 84963569--84963657 Score: 121
Period size: 44 Copynumber: 2.0 Consensus size: 46
84963559 ACATCTATTA
*
84963569 CATTCAACTAAACACA-AGAATT-CT-ATTACAACTCTATTCAATTC
1 CATTCAACCAAACA-ATAGAATTACTGATTACAACTCTATTCAATTC
* *
84963613 CATTCAACCAAACAATTGAATTACTGATTACAGCTCTATTCAATT
1 CATTCAACCAAACAATAGAATTACTGATTACAACTCTATTCAATT
84963658 ACAACTCTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
43 1 0.03
44 18 0.46
45 2 0.05
46 18 0.46
ACGTcount: A:0.39, C:0.24, G:0.04, T:0.33
Consensus pattern (46 bp):
CATTCAACCAAACAATAGAATTACTGATTACAACTCTATTCAATTC
Found at i:84963660 original size:16 final size:16
Alignment explanation
Indices: 84963639--84963693 Score: 76
Period size: 16 Copynumber: 3.4 Consensus size: 16
84963629 TGAATTACTG
84963639 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCA
*
84963655 ATTACAACTCTATTCA
1 ATTACAGCTCTATTCA
*
84963671 ATTACAGC-CTTATTCC
1 ATTACAGCTC-TATTCA
84963687 ATTACAG
1 ATTACAG
84963694 TGAACCAAAC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
15 1 0.03
16 34 0.97
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.36
Consensus pattern (16 bp):
ATTACAGCTCTATTCA
Found at i:84966357 original size:39 final size:39
Alignment explanation
Indices: 84966283--84966359 Score: 102
Period size: 39 Copynumber: 2.0 Consensus size: 39
84966273 AATTGGTTAA
* * *
84966283 TAAATCATATTTTATAAATAATGGATAGTATTTTTTTAT
1 TAAAACATATTTTATAAATAATGGATAGCAATTTTTTAT
*
84966322 TAAAACATATTTTATAATTAATGGAT-GCCAATTTTTTA
1 TAAAACATATTTTATAAATAATGGATAG-CAATTTTTTA
84966360 GTTTTTTTGG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.03
39 32 0.97
ACGTcount: A:0.39, C:0.05, G:0.08, T:0.48
Consensus pattern (39 bp):
TAAAACATATTTTATAAATAATGGATAGCAATTTTTTAT
Found at i:84967192 original size:27 final size:27
Alignment explanation
Indices: 84967137--84967198 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
84967127 AGAAGGAGGA
*
84967137 AAAAATAGAAAAGAAAATAAAAGAGAT
1 AAAAATAGAAAAGAAAATAAAAGAAAT
*
84967164 AAAAA-AGTAAAAGAAAATAAAATAAAT
1 AAAAATAG-AAAAGAAAATAAAAGAAAT
84967191 AAAGAATA
1 AAA-AATA
84967199 TATTTTTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
26 2 0.07
27 25 0.83
28 2 0.07
29 1 0.03
ACGTcount: A:0.76, C:0.00, G:0.11, T:0.13
Consensus pattern (27 bp):
AAAAATAGAAAAGAAAATAAAAGAAAT
Found at i:84970120 original size:106 final size:106
Alignment explanation
Indices: 84969950--84970150 Score: 375
Period size: 106 Copynumber: 1.9 Consensus size: 106
84969940 AAGCTTTAAG
*
84969950 AGGATATTTGGCTGTTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGA
1 AGGATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGA
84970015 TTTTCCAAACGCGAAATATTGCCTTATTTAAAAGTTTAAAA
66 TTTTCCAAACGCGAAATATTGCCTTATTTAAAAGTTTAAAA
* *
84970056 AGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGA
1 AGGATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGA
84970121 TTTTCCAAACGCGAAATATTGCCTTATTTA
66 TTTTCCAAACGCGAAATATTGCCTTATTTA
84970151 GAAAAATCTT
Statistics
Matches: 92, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
106 92 1.00
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.30
Consensus pattern (106 bp):
AGGATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGA
TTTTCCAAACGCGAAATATTGCCTTATTTAAAAGTTTAAAA
Found at i:84971079 original size:23 final size:23
Alignment explanation
Indices: 84971053--84971101 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 23
84971043 GCTCCAATAT
*
84971053 TAACAACAATGAC-AATAATAGAA
1 TAACAACAATAACAAATAA-AGAA
84971076 TAACAACAATAACAAATAAAGAA
1 TAACAACAATAACAAATAAAGAA
84971099 TAA
1 TAA
84971102 TAATGATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 19 0.79
24 5 0.21
ACGTcount: A:0.65, C:0.12, G:0.06, T:0.16
Consensus pattern (23 bp):
TAACAACAATAACAAATAAAGAA
Found at i:84971698 original size:137 final size:137
Alignment explanation
Indices: 84971532--84971805 Score: 539
Period size: 137 Copynumber: 2.0 Consensus size: 137
84971522 ACTGAGGCCT
84971532 TTTGCCTTCTCTCCCTCTCTCTTTGCTTCAGCCGATCGGGCTATCTCACCGCCCACCGTATCGCA
1 TTTGCCTTCTCTCCCTCTCTCTTTGCTTCAGCCGATCGGGCTATCTCACCGCCCACCGTATCGCA
84971597 GCTATTTTCGGTGCCCGGCGACGCGCGGCCGTGGGTATTTAAACCCCGCTTGGGAGCCCTTCGAA
66 GCTATTTTCGGTGCCCGGCGACGCGCGGCCGTGGGTATTTAAACCCCGCTTGGGAGCCCTTCGAA
84971662 GGCCAAG
131 GGCCAAG
*
84971669 TTTGCCTTCTCTCCCTCTCTCTTTGCTTCAGCCGATCGGGCTATCTCACCGCCCACCGTATCGCC
1 TTTGCCTTCTCTCCCTCTCTCTTTGCTTCAGCCGATCGGGCTATCTCACCGCCCACCGTATCGCA
84971734 GCTATTTTCGGTGCCCGGCGACGCGCGGCCGTGGGTATTTAAACCCCGCTTGGGAGCCCTTCGAA
66 GCTATTTTCGGTGCCCGGCGACGCGCGGCCGTGGGTATTTAAACCCCGCTTGGGAGCCCTTCGAA
84971799 GGCCAAG
131 GGCCAAG
84971806 CACCTCGACG
Statistics
Matches: 136, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
137 136 1.00
ACGTcount: A:0.13, C:0.36, G:0.25, T:0.26
Consensus pattern (137 bp):
TTTGCCTTCTCTCCCTCTCTCTTTGCTTCAGCCGATCGGGCTATCTCACCGCCCACCGTATCGCA
GCTATTTTCGGTGCCCGGCGACGCGCGGCCGTGGGTATTTAAACCCCGCTTGGGAGCCCTTCGAA
GGCCAAG
Found at i:84972194 original size:133 final size:133
Alignment explanation
Indices: 84971956--84972222 Score: 525
Period size: 133 Copynumber: 2.0 Consensus size: 133
84971946 TCTATTTTCG
*
84971956 TATATAAAAAGAAAAATAAAAAATAAATGAACTCAGATCTTAGAACGAAAGTGAAAATCAACCTT
1 TATATAAAAAGAAAAATAAAAAATAAATGAACTCAGATCTTAGAACGAAAGTGAAAATCAACCTG
84972021 TTTTGATTTCTTGCTACCCTTTGTTTATGTTTGTTTCCGATCTCTCATATCTGTGTTTACAAAAT
66 TTTTGATTTCTTGCTACCCTTTGTTTATGTTTGTTTCCGATCTCTCATATCTGTGTTTACAAAAT
84972086 CCT
131 CCT
84972089 TATATAAAAAGAAAAATAAAAAATAAATGAACTCAGATCTTAGAACGAAAGTGAAAATCAACCTG
1 TATATAAAAAGAAAAATAAAAAATAAATGAACTCAGATCTTAGAACGAAAGTGAAAATCAACCTG
84972154 TTTTGATTTCTTGCTACCCTTTGTTTATGTTTGTTTCCGATCTCTCATATCTGTGTTTACAAAAT
66 TTTTGATTTCTTGCTACCCTTTGTTTATGTTTGTTTCCGATCTCTCATATCTGTGTTTACAAAAT
84972219 CCT
131 CCT
84972222 T
1 T
84972223 TTTTTTTCAA
Statistics
Matches: 133, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
133 133 1.00
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.37
Consensus pattern (133 bp):
TATATAAAAAGAAAAATAAAAAATAAATGAACTCAGATCTTAGAACGAAAGTGAAAATCAACCTG
TTTTGATTTCTTGCTACCCTTTGTTTATGTTTGTTTCCGATCTCTCATATCTGTGTTTACAAAAT
CCT
Found at i:84973142 original size:27 final size:27
Alignment explanation
Indices: 84973110--84973179 Score: 70
Period size: 27 Copynumber: 2.6 Consensus size: 27
84973100 ATGCACTTCG
*
84973110 GTGCTTACTGCTACGTGATTGCACTAT
1 GTGCTTACTGCTACGTGATTACACTAT
* * *
84973137 GTGCTTACCT-TTATGTGATTACACTTT
1 GTGCTTA-CTGCTACGTGATTACACTAT
* *
84973164 ATTCTTACTGCTACGT
1 GTGCTTACTGCTACGT
84973180 TAAACGCATG
Statistics
Matches: 33, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
26 2 0.06
27 29 0.88
28 2 0.06
ACGTcount: A:0.19, C:0.21, G:0.17, T:0.43
Consensus pattern (27 bp):
GTGCTTACTGCTACGTGATTACACTAT
Found at i:84977585 original size:33 final size:34
Alignment explanation
Indices: 84977540--84977612 Score: 87
Period size: 33 Copynumber: 2.2 Consensus size: 34
84977530 ATTAGATCTC
*
84977540 AAAA-TTATTACTTTAGAAAAAATTTTAAAATTT
1 AAAATTTATTACTTTAGAAAAAATTTTAAAATAT
*** *
84977573 AAAATTTA-TACTTTTTTAAAATTTTTAAAATAT
1 AAAATTTATTACTTTAGAAAAAATTTTAAAATAT
84977606 AAAATTT
1 AAAATTT
84977613 GAAAATTTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
33 31 0.91
34 3 0.09
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.47
Consensus pattern (34 bp):
AAAATTTATTACTTTAGAAAAAATTTTAAAATAT
Done.