Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 283 of 313
Found at i:86351354 original size:20 final size:20
Alignment explanation
Indices: 86351326--86351364 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
86351316 AAACATACAT
* *
86351326 TTCACATACAATTTAATCAA
1 TTCAAATACAATTCAATCAA
86351346 TTCAAATACAATTCAATCA
1 TTCAAATACAATTCAATCA
86351365 CAACCAATCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (20 bp):
TTCAAATACAATTCAATCAA
Found at i:86353601 original size:40 final size:40
Alignment explanation
Indices: 86353397--86353601 Score: 236
Period size: 40 Copynumber: 5.1 Consensus size: 40
86353387 CGGAATTTAA
** *
86353397 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
86353437 CCGGTTATAGTAACTCTCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
86353477 CCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
86353517 CCGAATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
86353557 CCGGATATGGTCACCTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGT-AACTCGCACAAATGCCTTCGGGACTTAGC
86353597 CCGGA
1 CCGGA
86353602 AATCATTCAA
Statistics
Matches: 143, Mismatches: 18, Indels: 8
0.85 0.11 0.05
Matches are distributed among these distances:
39 4 0.03
40 126 0.88
41 13 0.09
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:86360610 original size:46 final size:47
Alignment explanation
Indices: 86360534--86360735 Score: 217
Period size: 47 Copynumber: 4.3 Consensus size: 47
86360524 TTGCACATAG
* **
86360534 TCACATATCACACACTGAAGCCATAGCCCAGCCATGGTCTTACACGG-A
1 TCACATATCACAC-C-GATGCCATAGCCCAGATATGGTCTTACACGGAA
* * * *
86360582 TCACATATCACACTGATGCTATATCCCAGATATGGTCTTACACAGAA
1 TCACATATCACACCGATGCCATAGCCCAGATATGGTCTTACACGGAA
* * * * *
86360629 GCACATATCATACCGATGTCATATCCCAGATATGGTCTTATACGGAA
1 TCACATATCACACCGATGCCATAGCCCAGATATGGTCTTACACGGAA
* * * * *
86360676 GCTCATATCACACCGATGCCATAGCCTAGCTATGGTCTTATACGGAAA
1 TCACATATCACACCGATGCCATAGCCCAGATATGGTCTTACACGG-AA
86360724 TCACATATCACA
1 TCACATATCACA
86360736 TGTTGCCATG
Statistics
Matches: 130, Mismatches: 22, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
46 25 0.19
47 80 0.62
48 25 0.19
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (47 bp):
TCACATATCACACCGATGCCATAGCCCAGATATGGTCTTACACGGAA
Found at i:86360828 original size:18 final size:18
Alignment explanation
Indices: 86360807--86360843 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
86360797 CTAAATCCGT
86360807 CGTTCCATCTAATTTGTA
1 CGTTCCATCTAATTTGTA
86360825 CGTTCCATCTAATTTGTA
1 CGTTCCATCTAATTTGTA
86360843 C
1 C
86360844 TTTTACTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.43
Consensus pattern (18 bp):
CGTTCCATCTAATTTGTA
Found at i:86361345 original size:16 final size:16
Alignment explanation
Indices: 86361326--86361356 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
86361316 TTCTATCAAA
*
86361326 ATCACTTAATAAAATC
1 ATCACATAATAAAATC
86361342 ATCACATAATAAAAT
1 ATCACATAATAAAAT
86361357 AAGAACTTCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.16, G:0.00, T:0.29
Consensus pattern (16 bp):
ATCACATAATAAAATC
Found at i:86364281 original size:5 final size:5
Alignment explanation
Indices: 86364271--86364301 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
86364261 TATAAAAAAA
86364271 TATTT TATTT TATTT TATTT TATTT TATTT T
1 TATTT TATTT TATTT TATTT TATTT TATTT T
86364302 TTAATTACTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TATTT
Found at i:86371028 original size:19 final size:22
Alignment explanation
Indices: 86370982--86371027 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
86370972 AAGTAGGTTG
86370982 TATATTATTTTTTGTAATATTA
1 TATATTATTTTTTGTAATATTA
86371004 TATATTATTTTTAT-TAAT-TTA
1 TATATTATTTTT-TGTAATATTA
86371025 TAT
1 TAT
86371028 TTTAATAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 6 0.26
22 16 0.70
23 1 0.04
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (22 bp):
TATATTATTTTTTGTAATATTA
Found at i:86371080 original size:21 final size:20
Alignment explanation
Indices: 86371051--86371090 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
86371041 ATATTAAGAA
86371051 TATTATTAAATTATATATTAT
1 TATTATTAAATTATA-ATTAT
*
86371072 TATTGTTAAATTATAATTA
1 TATTATTAAATTATAATTA
86371091 ATAATAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (20 bp):
TATTATTAAATTATAATTAT
Found at i:86371153 original size:61 final size:59
Alignment explanation
Indices: 86371000--86371158 Score: 185
Period size: 61 Copynumber: 2.6 Consensus size: 59
86370990 TTTTTGTAAT
* *** **
86371000 ATTATATATTATTTTTATTAATTTATATTTTAATAATTGCTATATTAAGAATATTATTAA
1 ATTATATATTATTTTTATTAAATTATA-TTTAATAATAAATATATTAAGAATAGGATTAA
* * * *
86371060 ATTATATATTATTATTGTTAAATTATAATTAATAATAAATTTATTAA-AATAGGATTAA
1 ATTATATATTATTTTTATTAAATTATATTTAATAATAAATATATTAAGAATAGGATTAA
86371118 ATTATGTATTATTATTTTTATTAAATTATATTTAATAATAA
1 ATTA--TA-TATTATTTTTATTAAATTATATTTAATAATAA
86371159 TCCTATTAAA
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
58 13 0.16
59 15 0.18
60 26 0.31
61 29 0.35
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (59 bp):
ATTATATATTATTTTTATTAAATTATATTTAATAATAAATATATTAAGAATAGGATTAA
Found at i:86371350 original size:16 final size:16
Alignment explanation
Indices: 86371329--86371376 Score: 60
Period size: 16 Copynumber: 3.0 Consensus size: 16
86371319 AATTAATTTG
86371329 CTATTACAGTTCTATT
1 CTATTACAGTTCTATT
**
86371345 CTATTACAACTCTATT
1 CTATTACAGTTCTATT
* *
86371361 CCATTATAGTTCTATT
1 CTATTACAGTTCTATT
86371377 ACATTACAAC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.27, C:0.21, G:0.04, T:0.48
Consensus pattern (16 bp):
CTATTACAGTTCTATT
Found at i:86371383 original size:32 final size:32
Alignment explanation
Indices: 86371331--86371400 Score: 106
Period size: 32 Copynumber: 2.2 Consensus size: 32
86371321 TTAATTTGCT
*
86371331 ATTACAGTTCTATTCTATTACAACTCTATTCC
1 ATTACAGTTCTATTCTATTACAACCCTATTCC
*
86371363 ATTATAGTTCTATTAC-ATTACAACCCTATTCC
1 ATTACAGTTCTATT-CTATTACAACCCTATTCC
86371395 ATTACA
1 ATTACA
86371401 CTGAACCAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 33 0.97
33 1 0.03
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (32 bp):
ATTACAGTTCTATTCTATTACAACCCTATTCC
Found at i:86374879 original size:20 final size:19
Alignment explanation
Indices: 86374850--86374888 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
86374840 AACCTAGCGG
86374850 TTCAGACGATGTACAAAGT
1 TTCAGACGATGTACAAAGT
* *
86374869 NTTCAGTCGATGTACTAAGT
1 -TTCAGACGATGTACAAAGT
86374889 GTAAAATATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.31
Consensus pattern (19 bp):
TTCAGACGATGTACAAAGT
Found at i:86375091 original size:14 final size:15
Alignment explanation
Indices: 86375061--86375098 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
86375051 GCCTCTTTTG
86375061 CATTT-CATTTCATT
1 CATTTGCATTTCATT
86375075 CATTTGCATTTCA-T
1 CATTTGCATTTCATT
*
86375089 CATATGCATT
1 CATTTGCATT
86375099 AAGTTTCATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 15 0.68
15 7 0.32
ACGTcount: A:0.24, C:0.21, G:0.05, T:0.50
Consensus pattern (15 bp):
CATTTGCATTTCATT
Found at i:86380639 original size:189 final size:186
Alignment explanation
Indices: 86380213--86380769 Score: 611
Period size: 189 Copynumber: 3.0 Consensus size: 186
86380203 AGAAATCAAA
** * *
86380213 AATCCTATACAGCTGAAGTTGCAGTAGGTCGAATCAAATCTACCATGGCGAATCTTTTCTCCCTG
1 AATCCTATACCTCTGAAGTTGCAGTAGGTCGGATCAAATCTACCATGGCGAATCTTATCTCCCTG
* ** * * * * * * *
86380278 AAGTTGTAGTGGAGCAGATTGAAGCCGCGAACCTTATCTACCTGAAGTTTCAGTGGAGCAGGCTA
66 AAGTTGCAGAAGAGCAGATTGAAGCCACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTG
* *
86380343 AAGATAGCAAATCTTATTTCTCTGAAGTTGCAGTGGAACAGATTAAAGCTACGAGTTAC
131 AAGATAGCAAATCTTATTTCTCTGAAGTTGCAGTAGAATAGATTAAAGCTA--AG-TAC
* * * * * *
86380402 AAGTCCTATACCTCTGAAGTTGTAATAGGTCAGATCAAATCGACCATGGTGAATCTTATCTCTCT
1 AA-TCCTATACCTCTGAAGTTGCAGTAGGTCGGATCAAATCTACCATGGCGAATCTTATCTCCCT
* * *
86380467 AAAGTTGCAGAAGAGCAGATTAAAGCCACAAACAACAAATCTCATCTCCCTAAAGTTGCAGTGGA
65 GAAGTTGCAGAAGAGCAGATTGAAGCCACAAAC--C---T-T-ATCTCCCTGAAGTTGCAGTGGA
* * * * *
86380532 GCAAGTTGAAGTTA-CAAGTCTTATATCTCTGAAGTTGCAGTAAAATAGATTAAAGCT-A-T-G
123 GCAAGTTGAAGATAGCAAATCTTATTTCTCTGAAGTTGCAGTAGAATAGATTAAAGCTAAGTAC
* *
86380592 AATCCTATACCTCTGAAGTTGCAGCAGGTTGGATCAAATCTACCATGGCGAATCTTATCTCCCTG
1 AATCCTATACCTCTGAAGTTGCAGTAGGTCGGATCAAATCTACCATGGCGAATCTTATCTCCCTG
* * * * *
86380657 AAGTTACAGTAA-AGCAGATTGAAGCCCCAAACCTTATCTCCCTGAAGTTGCAGTGAAGTAAATT
66 AAGTTGCAG-AAGAGCAGATTGAAGCCACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTT
* * *
86380721 GAAGATAGCAAATATTATTTCCCTGAAGTTGCAGTAGAATAGACTAAAG
130 GAAGATAGCAAATCTTATTTCTCTGAAGTTGCAGTAGAATAGATTAAAG
86380770 GTACAGATTA
Statistics
Matches: 305, Mismatches: 53, Indels: 26
0.79 0.14 0.07
Matches are distributed among these distances:
182 31 0.10
183 36 0.12
184 1 0.00
187 1 0.00
189 82 0.27
190 82 0.27
191 1 0.00
192 1 0.00
193 1 0.00
195 1 0.00
196 39 0.13
197 29 0.10
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.27
Consensus pattern (186 bp):
AATCCTATACCTCTGAAGTTGCAGTAGGTCGGATCAAATCTACCATGGCGAATCTTATCTCCCTG
AAGTTGCAGAAGAGCAGATTGAAGCCACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTG
AAGATAGCAAATCTTATTTCTCTGAAGTTGCAGTAGAATAGATTAAAGCTAAGTAC
Found at i:86385941 original size:14 final size:15
Alignment explanation
Indices: 86385911--86385948 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
86385901 GCCTCTTTTG
86385911 CATTT-CATTTCATT
1 CATTTGCATTTCATT
86385925 CATTTGCATTTCA-T
1 CATTTGCATTTCATT
*
86385939 CATATGCATT
1 CATTTGCATT
86385949 AAGTTTCATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 15 0.68
15 7 0.32
ACGTcount: A:0.24, C:0.21, G:0.05, T:0.50
Consensus pattern (15 bp):
CATTTGCATTTCATT
Found at i:86391489 original size:189 final size:186
Alignment explanation
Indices: 86391063--86391619 Score: 611
Period size: 189 Copynumber: 3.0 Consensus size: 186
86391053 AGAAATCAAA
** * *
86391063 AATCCTATACAGCTGAAGTTGCAGTAGGTCGAATCAAATCTACCATGGCGAATCTTTTCTCCCTG
1 AATCCTATACCTCTGAAGTTGCAGTAGGTCGGATCAAATCTACCATGGCGAATCTTATCTCCCTG
* ** * * * * * * *
86391128 AAGTTGTAGTGGAGCAGATTGAAGCCGCGAACCTTATCTACCTGAAGTTTCAGTGGAGCAGGCTA
66 AAGTTGCAGAAGAGCAGATTGAAGCCACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTG
* *
86391193 AAGATAGCAAATCTTATTTCTCTGAAGTTGCAGTGGAACAGATTAAAGCTACGAGTTAC
131 AAGATAGCAAATCTTATTTCTCTGAAGTTGCAGTAGAATAGATTAAAGCTA--AG-TAC
* * * * * *
86391252 AAGTCCTATACCTCTGAAGTTGTAATAGGTCAGATCAAATCGACCATGGTGAATCTTATCTCTCT
1 AA-TCCTATACCTCTGAAGTTGCAGTAGGTCGGATCAAATCTACCATGGCGAATCTTATCTCCCT
* * *
86391317 AAAGTTGCAGAAGAGCAGATTAAAGCCACAAACAACAAATCTCATCTCCCTAAAGTTGCAGTGGA
65 GAAGTTGCAGAAGAGCAGATTGAAGCCACAAAC--C---T-T-ATCTCCCTGAAGTTGCAGTGGA
* * * * *
86391382 GCAAGTTGAAGTTA-CAAGTCTTATATCTCTGAAGTTGCAGTAAAATAGATTAAAGCT-A-T-G
123 GCAAGTTGAAGATAGCAAATCTTATTTCTCTGAAGTTGCAGTAGAATAGATTAAAGCTAAGTAC
* *
86391442 AATCCTATACCTCTGAAGTTGCAGCAGGTTGGATCAAATCTACCATGGCGAATCTTATCTCCCTG
1 AATCCTATACCTCTGAAGTTGCAGTAGGTCGGATCAAATCTACCATGGCGAATCTTATCTCCCTG
* * * * *
86391507 AAGTTACAGTAA-AGCAGATTGAAGCCCCAAACCTTATCTCCCTGAAGTTGCAGTGAAGTAAATT
66 AAGTTGCAG-AAGAGCAGATTGAAGCCACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTT
* * *
86391571 GAAGATAGCAAATATTATTTCCCTGAAGTTGCAGTAGAATAGACTAAAG
130 GAAGATAGCAAATCTTATTTCTCTGAAGTTGCAGTAGAATAGATTAAAG
86391620 GTACAGATTA
Statistics
Matches: 305, Mismatches: 53, Indels: 26
0.79 0.14 0.07
Matches are distributed among these distances:
182 31 0.10
183 36 0.12
184 1 0.00
187 1 0.00
189 82 0.27
190 82 0.27
191 1 0.00
192 1 0.00
193 1 0.00
195 1 0.00
196 39 0.13
197 29 0.10
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.27
Consensus pattern (186 bp):
AATCCTATACCTCTGAAGTTGCAGTAGGTCGGATCAAATCTACCATGGCGAATCTTATCTCCCTG
AAGTTGCAGAAGAGCAGATTGAAGCCACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTG
AAGATAGCAAATCTTATTTCTCTGAAGTTGCAGTAGAATAGATTAAAGCTAAGTAC
Found at i:86393423 original size:24 final size:24
Alignment explanation
Indices: 86393396--86393525 Score: 97
Period size: 24 Copynumber: 5.4 Consensus size: 24
86393386 GGATTACATG
86393396 TTATTTTAAATTGTTATATATTAT
1 TTATTTTAAATTGTTATATATTAT
* *
86393420 TTATTTTAAGTTGCT-T-TA-T-T
1 TTATTTTAAATTGTTATATATTAT
* *
86393440 TTATTTTAAATTGTTTTACATATTAA
1 TTATTTTAAATTG--TTATATATTAT
* *
86393466 TTATTTTAAATTGTTTTATACTAT
1 TTATTTTAAATTGTTATATATTAT
* * * *
86393490 TCACTTTAAATTGCTTTTTATAATAT
1 TTATTTTAAATTG--TTATATATTAT
*
86393516 CTATTTTAAA
1 TTATTTTAAA
86393526 CTTATTTTTT
Statistics
Matches: 82, Mismatches: 16, Indels: 14
0.73 0.14 0.12
Matches are distributed among these distances:
20 13 0.16
21 1 0.01
22 3 0.04
23 1 0.01
24 33 0.40
25 1 0.01
26 30 0.37
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.59
Consensus pattern (24 bp):
TTATTTTAAATTGTTATATATTAT
Found at i:86393457 original size:20 final size:22
Alignment explanation
Indices: 86393396--86393571 Score: 95
Period size: 26 Copynumber: 7.3 Consensus size: 22
86393386 GGATTACATG
86393396 TTATTTTAAATTGTTATATATTAT
1 TTATTTTAAATTGTT-T-TATTAT
* *
86393420 TTATTTTAAGTTGCTTTA-T-T
1 TTATTTTAAATTGTTTTATTAT
*
86393440 TTATTTTAAATTGTTTTACATATTAA
1 TTATTTTAAATTG-TTT---TATTAT
86393466 TTATTTTAAATTGTTTTATACTAT
1 TTATTTTAAATTGTTTTAT--TAT
* *
86393490 TCACTTTAAATTGCTTTTTATAATAT
1 TTATTTTAAATTG--TTTTAT--TAT
* *
86393516 CTATTTTAAACTTATTTTTTTATGTAT
1 TTATTTT-AA---ATTGTTTTAT-TAT
* * *
86393543 TTATTTAAAATTGTCTCATTAT
1 TTATTTTAAATTGTTTTATTAT
86393565 TTATTTT
1 TTATTTT
86393572 TAAACGGTAT
Statistics
Matches: 118, Mismatches: 20, Indels: 30
0.70 0.12 0.18
Matches are distributed among these distances:
20 13 0.11
21 3 0.03
22 14 0.12
23 8 0.07
24 28 0.24
25 4 0.03
26 29 0.25
27 10 0.08
28 6 0.05
30 3 0.03
ACGTcount: A:0.29, C:0.06, G:0.05, T:0.61
Consensus pattern (22 bp):
TTATTTTAAATTGTTTTATTAT
Found at i:86393474 original size:46 final size:44
Alignment explanation
Indices: 86393396--86393484 Score: 124
Period size: 46 Copynumber: 2.0 Consensus size: 44
86393386 GGATTACATG
* * *
86393396 TTATTTTAAATTGTTATATATTATTTATTTTAAGTTGCTTTATT
1 TTATTTTAAATTGTTACATATTAATTATTTTAAATTGCTTTATT
*
86393440 TTATTTTAAATTGTTTTACATATTAATTATTTTAAATTGTTTTAT
1 TTATTTTAAATTG--TTACATATTAATTATTTTAAATTGCTTTAT
86393485 ACTATTCACT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
44 13 0.33
46 26 0.67
ACGTcount: A:0.29, C:0.02, G:0.06, T:0.63
Consensus pattern (44 bp):
TTATTTTAAATTGTTACATATTAATTATTTTAAATTGCTTTATT
Found at i:86397856 original size:34 final size:34
Alignment explanation
Indices: 86397817--86397886 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
86397807 TCAAATAAAC
86397817 ACCAAAATTAATACATTTCAAAGCCAAAACACTA
1 ACCAAAATTAATACATTTCAAAGCCAAAACACTA
86397851 ACCAAAATTAATACATTTCAAAGCCAAAACACTA
1 ACCAAAATTAATACATTTCAAAGCCAAAACACTA
86397885 AC
1 AC
86397887 TCACATAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.53, C:0.24, G:0.03, T:0.20
Consensus pattern (34 bp):
ACCAAAATTAATACATTTCAAAGCCAAAACACTA
Found at i:86398875 original size:21 final size:21
Alignment explanation
Indices: 86398849--86398888 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
86398839 CCGTGTGTCA
86398849 CACACGGTCTAGACACATGCC
1 CACACGGTCTAGACACATGCC
86398870 CACACGGTCTAGACACATG
1 CACACGGTCTAGACACATG
86398889 TCTGTGTGGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.35, G:0.20, T:0.15
Consensus pattern (21 bp):
CACACGGTCTAGACACATGCC
Found at i:86403688 original size:17 final size:18
Alignment explanation
Indices: 86403666--86403700 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
86403656 CATAACAGCC
86403666 CACATTTTCCT-TCCTTT
1 CACATTTTCCTATCCTTT
*
86403683 CACATTTTTCTATCCTTT
1 CACATTTTCCTATCCTTT
86403701 TCTACAACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.14, C:0.31, G:0.00, T:0.54
Consensus pattern (18 bp):
CACATTTTCCTATCCTTT
Found at i:86417659 original size:78 final size:78
Alignment explanation
Indices: 86417530--86417680 Score: 284
Period size: 78 Copynumber: 1.9 Consensus size: 78
86417520 CATTTGCAAA
86417530 TGTCAGAAATCACCACACTATCAAATAATCACATAAAATGGCATGTATAGCTAGACCCAACGCAT
1 TGTCAGAAATCACCACACTATCAAATAATCACATAAAATGGCATGTATAGCTAGACCCAACGCAT
86417595 TACGGTAGACAAT
66 TACGGTAGACAAT
* *
86417608 TGTCAGAAATCACCGCACTATCCAATAATCACATAAAATGGCATGTATAGCTAGACCCAACGCAT
1 TGTCAGAAATCACCACACTATCAAATAATCACATAAAATGGCATGTATAGCTAGACCCAACGCAT
86417673 TACGGTAG
66 TACGGTAG
86417681 TCCTAGAATC
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
78 71 1.00
ACGTcount: A:0.39, C:0.24, G:0.15, T:0.22
Consensus pattern (78 bp):
TGTCAGAAATCACCACACTATCAAATAATCACATAAAATGGCATGTATAGCTAGACCCAACGCAT
TACGGTAGACAAT
Found at i:86418808 original size:108 final size:108
Alignment explanation
Indices: 86418619--86418836 Score: 436
Period size: 108 Copynumber: 2.0 Consensus size: 108
86418609 ATTGTACCAA
86418619 AAAAAGGGGGGGCTTTGATAGTGTGGGCGACTTCGACTTCAAAATCCCGAGTCCGATAGCTGGAG
1 AAAAAGGGGGGGCTTTGATAGTGTGGGCGACTTCGACTTCAAAATCCCGAGTCCGATAGCTGGAG
86418684 AACCAAAATCTATAAAACAGAGGATCAAAGAAACGGAGTAAGC
66 AACCAAAATCTATAAAACAGAGGATCAAAGAAACGGAGTAAGC
86418727 AAAAAGGGGGGGCTTTGATAGTGTGGGCGACTTCGACTTCAAAATCCCGAGTCCGATAGCTGGAG
1 AAAAAGGGGGGGCTTTGATAGTGTGGGCGACTTCGACTTCAAAATCCCGAGTCCGATAGCTGGAG
86418792 AACCAAAATCTATAAAACAGAGGATCAAAGAAACGGAGTAAGC
66 AACCAAAATCTATAAAACAGAGGATCAAAGAAACGGAGTAAGC
86418835 AA
1 AA
86418837 TTTATGCTTA
Statistics
Matches: 110, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
108 110 1.00
ACGTcount: A:0.38, C:0.17, G:0.28, T:0.17
Consensus pattern (108 bp):
AAAAAGGGGGGGCTTTGATAGTGTGGGCGACTTCGACTTCAAAATCCCGAGTCCGATAGCTGGAG
AACCAAAATCTATAAAACAGAGGATCAAAGAAACGGAGTAAGC
Found at i:86419299 original size:39 final size:40
Alignment explanation
Indices: 86419178--86419401 Score: 253
Period size: 40 Copynumber: 5.7 Consensus size: 40
86419168 GCTACTCGTT
* *
86419178 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* * * *
86419218 CAATTTCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* *
86419258 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
86419297 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
86419336 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
86419377 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
86419402 CATCATTCAA
Statistics
Matches: 160, Mismatches: 17, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.01
39 72 0.45
40 73 0.46
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:86419361 original size:118 final size:120
Alignment explanation
Indices: 86419178--86419401 Score: 287
Period size: 118 Copynumber: 1.9 Consensus size: 120
86419168 GCTACTCGTT
* * *
86419178 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTTCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
86419243 ATTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCACA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGAATTAGTATCTCACA
* * **
86419297 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* *
86419359 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
86419402 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
117 4 0.04
118 53 0.59
119 33 0.37
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTATCTCACA
Found at i:86419485 original size:37 final size:37
Alignment explanation
Indices: 86419442--86419519 Score: 140
Period size: 37 Copynumber: 2.1 Consensus size: 37
86419432 ATAAATCATG
86419442 GCACATTCGTATTTCATTTTCGTTAACAAAACTCGAA
1 GCACATTCGTATTTCATTTTCGTTAACAAAACTCGAA
*
86419479 GCACATTCGTATTTCGTTTTCGTTAACAAAACTCGAA
1 GCACATTCGTATTTCATTTTCGTTAACAAAACTCGAA
86419516 -CACA
1 GCACA
86419520 AGACACTTAT
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
36 4 0.10
37 36 0.90
ACGTcount: A:0.32, C:0.23, G:0.12, T:0.33
Consensus pattern (37 bp):
GCACATTCGTATTTCATTTTCGTTAACAAAACTCGAA
Found at i:86422242 original size:39 final size:40
Alignment explanation
Indices: 86422197--86422307 Score: 107
Period size: 40 Copynumber: 2.8 Consensus size: 40
86422187 CGGGGTTTAG
* * *
86422197 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** *
86422236 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * *
86422276 CCGGATATAGTCGCTAGCACAAATGCCTTCGG
1 CCGGATATAACCACTAGCATAAAGGCCTTCGG
86422308 ATCTTAGTCC
Statistics
Matches: 61, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 15 0.25
40 46 0.75
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:86422267 original size:40 final size:40
Alignment explanation
Indices: 86422220--86422364 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
86422210 CTCGCACAAG
* * * *
86422220 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAACCCGGATATAGTCGCTAGCACAAAT
86422260 GCCTTCGGGACTTAACCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAACCCGGATATAGTCGCTAGCACAAAT
** * *
86422300 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAACCCGGATATAGTCGC-TAGCACAAAT
* *
86422341 GCCTTCGGGACTTAGCCCGAATAT
1 GCCTTCGGGACTTAACCCGGATAT
86422365 CATTCGAGTA
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.65
41 26 0.29
42 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAACCCGGATATAGTCGCTAGCACAAAT
Found at i:86429168 original size:37 final size:37
Alignment explanation
Indices: 86429115--86429217 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
86429105 CAAATAGTCC
*
86429115 CCACACGTAGTTATCGGGTCTTACCCAGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCAGACAAAATCT
* *
86429152 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCAGACAAAATCT
86429189 CCACACGTAGTCATCGGGTCTTACCCAGA
1 CCACACGTAGTCATCGGGTCTTACCCAGA
86429218 ATATATTTCC
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCAGACAAAATCT
Found at i:86429503 original size:48 final size:48
Alignment explanation
Indices: 86429448--86429909 Score: 791
Period size: 48 Copynumber: 9.6 Consensus size: 48
86429438 GCCGAATCAC
86429448 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGA-AT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTC-ACAT
*
86429496 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * *
86429544 TAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
86429592 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
86429640 TAGCCATTCGGCTTTACCTCATATGCATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * *
86429688 TAGCCATTCGGCTTTACCGCATATACATATCTCATACATAGTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
86429736 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
86429784 TAGCCATTCGGCTTTACCTCATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
86429832 TAGCAATTCGGCTTTACCGCATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
86429880 TAGCCATTCGACTTTACCACATATACATAT
1 TAGCCATTCGGCTTTACCACATATACATAT
86429910 ATATTTATCT
Statistics
Matches: 392, Mismatches: 21, Indels: 2
0.94 0.05 0.00
Matches are distributed among these distances:
47 1 0.00
48 391 1.00
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.35
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
Found at i:86435918 original size:44 final size:43
Alignment explanation
Indices: 86435831--86436003 Score: 131
Period size: 43 Copynumber: 4.0 Consensus size: 43
86435821 ACATAGGATT
* * * *
86435831 TCGATATATGATTTCGTGTAAGACTACGTTTGGGAC-GTTGGCA
1 TCGATATATGATTTTGTGTAAGACCATGTCTGGGACAG-TGGCA
* *
86435874 TCGATTTGA-GATTTATGTGTAAGACCATGTCTGGTACA-TCGGCA
1 TCGATAT-ATGATTT-TGTGTAAGACCATGTCTGGGACAGT-GGCA
* *
86435918 TCG-TATATGATTTTGTGTAAGACCCTGTTTGGGACAGTGGCA
1 TCGATATATGATTTTGTGTAAGACCATGTCTGGGACAGTGGCA
* * *** * *
86435960 TCGACATTTGATTACATGTAAGGCCACGTCTGGGAC-GTTGGCA
1 TCGATATATGATTTTGTGTAAGACCATGTCTGGGACAG-TGGCA
86436003 T
1 T
86436004 TGTACTAGTT
Statistics
Matches: 103, Mismatches: 19, Indels: 16
0.75 0.14 0.12
Matches are distributed among these distances:
42 29 0.28
43 49 0.48
44 25 0.24
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.34
Consensus pattern (43 bp):
TCGATATATGATTTTGTGTAAGACCATGTCTGGGACAGTGGCA
Found at i:86435960 original size:42 final size:42
Alignment explanation
Indices: 86435835--86435962 Score: 120
Period size: 42 Copynumber: 3.0 Consensus size: 42
86435825 AGGATTTCGA
* *
86435835 TATATGATTTCGTGTAAGACTAC-GTTTGGGAC-GTTGGCATCG
1 TATATGATTTTGTGTAAGAC-CCTGTTTGGGACAG-TGGCATCG
* * * *
86435877 -ATTTGAGATTTATGTGTAAGACCATGTCTGGTACA-TCGGCATCG
1 TATAT--GATTT-TGTGTAAGACCCTGTTTGGGACAGT-GGCATCG
86435921 TATATGATTTTGTGTAAGACCCTGTTTGGGACAGTGGCATCG
1 TATATGATTTTGTGTAAGACCCTGTTTGGGACAGTGGCATCG
86435963 ACATTTGATT
Statistics
Matches: 68, Mismatches: 10, Indels: 16
0.72 0.11 0.17
Matches are distributed among these distances:
41 3 0.04
42 27 0.40
43 12 0.18
44 23 0.34
45 3 0.04
ACGTcount: A:0.23, C:0.15, G:0.27, T:0.35
Consensus pattern (42 bp):
TATATGATTTTGTGTAAGACCCTGTTTGGGACAGTGGCATCG
Found at i:86438963 original size:48 final size:48
Alignment explanation
Indices: 86438902--86439079 Score: 268
Period size: 48 Copynumber: 3.7 Consensus size: 48
86438892 AAGATGCCTC
** *
86438902 ATGTCGATGCCATGTCTTAGACATGGTCTTACACTGGCTCACATAACG
1 ATGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
* *
86438950 ATG-CTGATGCCATGTCCCAGACATGGTCTTAGACTAGCTCACATAACA
1 ATGTC-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
* *
86438998 ATGTCGATGTCATGTCCTAGACATGGTCTTACACTGGCTCACATAACA
1 ATGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
*
86439046 ATGTCGATGCCATGTCCCAGACATGGTTTTACAC
1 ATGTCGATGCCATGTCCCAGACATGGTCTTACAC
86439080 GATTACACAT
Statistics
Matches: 116, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
47 1 0.01
48 114 0.98
49 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (48 bp):
ATGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
Found at i:86441980 original size:44 final size:46
Alignment explanation
Indices: 86441931--86442098 Score: 150
Period size: 46 Copynumber: 3.7 Consensus size: 46
86441921 TATGCGTGCT
*
86441931 GATGCATGTCCCAAACATGTCTTACACTAGCAGAACTCT-T-A-GCC
1 GATGCATGTCCCAGACATGTCTTACACTAGC-GAACTCTGTCAGGCC
* * * *
86441975 GATGCATGTCCCAGACACGTCTTACACTGGCTATCTCTGTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCGAACTCTGTC-AGGCC
* * * * *
86442022 GATGCATGTCCCAGACATGTCTTAC-TTTG-GCACTCATAAT-ATGGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCGAACTC-T-GTCA-GGCC
*
86442068 GAAGCATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
86442099 CCTCGTCTGG
Statistics
Matches: 99, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
43 5 0.05
44 29 0.29
45 4 0.04
46 31 0.31
47 30 0.30
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.27
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCGAACTCTGTCAGGCC
Found at i:86442031 original size:47 final size:44
Alignment explanation
Indices: 86441931--86442046 Score: 144
Period size: 44 Copynumber: 2.6 Consensus size: 44
86441921 TATGCGTGCT
*
86441931 GATGCATGTCCCAAACATGTCTTACACTAGCAGAACTCTTAGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCAGAACTCTTAGCC
* * * *
86441975 GATGCATGTCCCAGACACGTCTTACACTGGC-TATCTCTGTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCAGAACTCT-T--A-GCC
86442022 GATGCATGTCCCAGACATGTCTTAC
1 GATGCATGTCCCAGACATGTCTTAC
86442047 TTTGGCACTC
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
43 5 0.08
44 29 0.47
46 1 0.02
47 27 0.44
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (44 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCAGAACTCTTAGCC
Found at i:86443897 original size:86 final size:86
Alignment explanation
Indices: 86443747--86443904 Score: 253
Period size: 86 Copynumber: 1.8 Consensus size: 86
86443737 ACAGATACGG
**
86443747 GTTAAGGGTGTTACACCATGTTCAGGATGAGGTATGGGCATTATAAATTTCTTTTTATGCCATTT
1 GTTAAGGGTGTTACACCATGTTCAGGACAAGGTATGGGCATTATAAATTTCTTTTTATGCCATTT
86443812 GGATTAATAAACACTCCTGCA
66 GGATTAATAAACACTCCTGCA
* * * * *
86443833 GTTAGGGGTGTTACACCATGTTTAGGACAAGTTATTGGCATTATGAATTTCTTTTTATGCCATTT
1 GTTAAGGGTGTTACACCATGTTCAGGACAAGGTATGGGCATTATAAATTTCTTTTTATGCCATTT
86443898 GGATTAA
66 GGATTAA
86443905 CAAATGCTTC
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
86 65 1.00
ACGTcount: A:0.27, C:0.13, G:0.22, T:0.39
Consensus pattern (86 bp):
GTTAAGGGTGTTACACCATGTTCAGGACAAGGTATGGGCATTATAAATTTCTTTTTATGCCATTT
GGATTAATAAACACTCCTGCA
Found at i:86448980 original size:68 final size:66
Alignment explanation
Indices: 86448908--86449057 Score: 169
Period size: 67 Copynumber: 2.2 Consensus size: 66
86448898 CATCATGTGT
* * * *
86448908 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATG-T-GTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAAGTTAGGACACCA
86448971 TGTAG
62 TGTAG
** * *
86448976 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTTAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAAGTT-AGGACACCATGT
86449041 AG
65 AG
86449043 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
86449058 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 25 0.36
65 4 0.06
66 2 0.03
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAAGTTAGGACACCATGTA
G
Found at i:86449013 original size:64 final size:64
Alignment explanation
Indices: 86448932--86449115 Score: 212
Period size: 67 Copynumber: 2.8 Consensus size: 64
86448922 AGACATTATG
* * * *
86448932 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * *
86448996 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTTAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAG-T--GTACACCATGTAGACAAGAGAGCTACGAGAT
86449061 AA
63 AA
* *
86449063 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAG-ACAAGAGAGC
86449116 CGAACTATAT
Statistics
Matches: 101, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
65 2 0.02
66 21 0.21
67 31 0.31
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:86453509 original size:93 final size:93
Alignment explanation
Indices: 86453402--86453758 Score: 678
Period size: 93 Copynumber: 3.8 Consensus size: 93
86453392 GCCCCTAAGT
* * * *
86453402 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
86453467 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
86453495 GAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
86453560 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
86453588 GAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
86453653 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
86453681 GAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
86453746 CGAGTTCGGATGC
66 CGAGTTCGGATGC
86453759 TCAACCATCC
Statistics
Matches: 260, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
93 260 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:86453519 original size:47 final size:47
Alignment explanation
Indices: 86453448--86453709 Score: 283
Period size: 47 Copynumber: 5.6 Consensus size: 47
86453438 ATCCATAAGT
86453448 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
* * * * *
86453495 GAACTCGGACTCAACTCAATGAGTTCGGA---C-A-TTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--TTCA-C
86453541 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
* * * * *
86453588 GAACTCGGACTCAACTCAATGAGTTCGGA---C-A-TTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--TTCA-C
86453634 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
*
86453681 GAACTCGGACTCAACTCAATGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
86453710 CATTCGCATC
Statistics
Matches: 176, Mismatches: 21, Indels: 36
0.76 0.09 0.15
Matches are distributed among these distances:
42 4 0.02
43 8 0.05
44 2 0.01
45 4 0.02
46 56 0.32
47 84 0.48
48 4 0.02
49 2 0.01
50 8 0.05
51 4 0.02
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:86453755 original size:46 final size:46
Alignment explanation
Indices: 86453397--86453755 Score: 337
Period size: 46 Copynumber: 7.7 Consensus size: 46
86453387 AACCCGCCCC
* * *
86453397 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
86453443 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* * *
86453491 TCA-CGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
86453536 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* * *
86453584 TCA-CGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
86453629 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* * *
86453677 TCA-CGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
86453722 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
86453756 TGCTCAACCA
Statistics
Matches: 253, Mismatches: 33, Indels: 54
0.74 0.10 0.16
Matches are distributed among these distances:
42 6 0.02
43 12 0.05
44 3 0.01
45 6 0.02
46 116 0.46
47 84 0.33
48 6 0.02
49 3 0.01
50 11 0.04
51 6 0.02
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:86470874 original size:86 final size:86
Alignment explanation
Indices: 86470776--86470946 Score: 324
Period size: 86 Copynumber: 2.0 Consensus size: 86
86470766 CATGGCTGAC
* *
86470776 TATTTTCGGTGTTAAATTCTTGATTTGGTAATAGTGTAGTAGGGAGACTCTCGGTGATGATTAGC
1 TATTTTCGGTGTTAAATTCATGATTTGGTAATAGTGTAGTAGGGAGACGCTCGGTGATGATTAGC
86470841 CTTTGGCATGGCTAGTCATGT
66 CTTTGGCATGGCTAGTCATGT
86470862 TATTTTCGGTGTTAAATTCATGATTTGGTAATAGTGTAGTAGGGAGACGCTCGGTGATGATTAGC
1 TATTTTCGGTGTTAAATTCATGATTTGGTAATAGTGTAGTAGGGAGACGCTCGGTGATGATTAGC
86470927 CTTTGGCATGGCTAGTCATG
66 CTTTGGCATGGCTAGTCATG
86470947 GTCATAAATT
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
86 83 1.00
ACGTcount: A:0.22, C:0.12, G:0.29, T:0.38
Consensus pattern (86 bp):
TATTTTCGGTGTTAAATTCATGATTTGGTAATAGTGTAGTAGGGAGACGCTCGGTGATGATTAGC
CTTTGGCATGGCTAGTCATGT
Found at i:86476953 original size:148 final size:148
Alignment explanation
Indices: 86476778--86477074 Score: 576
Period size: 148 Copynumber: 2.0 Consensus size: 148
86476768 AAGCATGGTT
86476778 TCATTCCTCCAAGTTTATGTTGTTTATTATTTAACATTGGTAAGTAAATTAGAATAAATTAAAGA
1 TCATTCCTCCAAGTTTATGTTGTTTATTATTTAACATTGGTAAGTAAATTAGAATAAATTAAAGA
* *
86476843 AAGGAATTAAAAAGGAAAATGATGAATAAAATATGGGAGGAAGAAGGAGTGTTCATCCTTTTCCT
66 AAGGAATTAAAAAGGAAAAAGATGAATAAAATAAGGGAGGAAGAAGGAGTGTTCATCCTTTTCCT
86476908 TGTTACAATTGCCGTGAG
131 TGTTACAATTGCCGTGAG
86476926 TCATTCCTCCAAGTTTATGTTGTTTATTATTTAACATTGGTAAGTAAATTAGAATAAATTAAAGA
1 TCATTCCTCCAAGTTTATGTTGTTTATTATTTAACATTGGTAAGTAAATTAGAATAAATTAAAGA
86476991 AAGGAATTAAAAAGGAAAAAGATGAATAAAATAAGGGAGGAAGAAGGAGTGTTCATCCTTTTCCT
66 AAGGAATTAAAAAGGAAAAAGATGAATAAAATAAGGGAGGAAGAAGGAGTGTTCATCCTTTTCCT
86477056 TGTTACAATTGCCGTGAG
131 TGTTACAATTGCCGTGAG
86477074 T
1 T
86477075 AAAGAAAACA
Statistics
Matches: 147, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
148 147 1.00
ACGTcount: A:0.38, C:0.09, G:0.20, T:0.33
Consensus pattern (148 bp):
TCATTCCTCCAAGTTTATGTTGTTTATTATTTAACATTGGTAAGTAAATTAGAATAAATTAAAGA
AAGGAATTAAAAAGGAAAAAGATGAATAAAATAAGGGAGGAAGAAGGAGTGTTCATCCTTTTCCT
TGTTACAATTGCCGTGAG
Found at i:86482658 original size:68 final size:68
Alignment explanation
Indices: 86482549--86482684 Score: 254
Period size: 68 Copynumber: 2.0 Consensus size: 68
86482539 TGACAGTTTG
*
86482549 GAGAATGCTAGAATAAAACTAATGAAGCTTGTTACAAATGTGGTTCGCTAGATCATTTCATTTGA
1 GAGAATGCTAGAATAAAACTAATGAAGCTTGTTACAAATGTGGTCCGCTAGATCATTTCATTTGA
86482614 GAT
66 GAT
*
86482617 GAGAATGCTGGAATAAAACTAATGAAGCTTGTTACAAATGTGGTCCGCTAGATCATTTCATTTGA
1 GAGAATGCTAGAATAAAACTAATGAAGCTTGTTACAAATGTGGTCCGCTAGATCATTTCATTTGA
86482682 GAT
66 GAT
86482685 TTTCCTGAGC
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 66 1.00
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.32
Consensus pattern (68 bp):
GAGAATGCTAGAATAAAACTAATGAAGCTTGTTACAAATGTGGTCCGCTAGATCATTTCATTTGA
GAT
Found at i:86483974 original size:28 final size:29
Alignment explanation
Indices: 86483925--86483992 Score: 79
Period size: 28 Copynumber: 2.4 Consensus size: 29
86483915 AAAGCCGAAA
** *
86483925 GTGATTGGGCCTGATGGGCCATAT-AAAT
1 GTGATTGGGCCTGACAGACCATATAAAAT
86483953 GTGATTGGGCCTGACAGACCATATGAAAAT
1 GTGATTGGGCCTGACAGACCATAT-AAAAT
86483983 GT--TTGGGCCT
1 GTGATTGGGCCT
86483993 AAAGGAGCCA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
28 29 0.83
30 6 0.17
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.28
Consensus pattern (29 bp):
GTGATTGGGCCTGACAGACCATATAAAAT
Found at i:86485355 original size:144 final size:144
Alignment explanation
Indices: 86485095--86485382 Score: 576
Period size: 144 Copynumber: 2.0 Consensus size: 144
86485085 ATAGATCATC
86485095 CGTTTTAAATAAAGTTTTCGCAACTGAAAAGAGATTTTACAAAGTAATTATTATCATACAAGAAG
1 CGTTTTAAATAAAGTTTTCGCAACTGAAAAGAGATTTTACAAAGTAATTATTATCATACAAGAAG
86485160 GAATATATTGTTTTTAATATACCTCACTTTGAAAGCAACAAATACAAGCTGAGATTTTACTCTAG
66 GAATATATTGTTTTTAATATACCTCACTTTGAAAGCAACAAATACAAGCTGAGATTTTACTCTAG
86485225 GTTTTTATTTTAAA
131 GTTTTTATTTTAAA
86485239 CGTTTTAAATAAAGTTTTCGCAACTGAAAAGAGATTTTACAAAGTAATTATTATCATACAAGAAG
1 CGTTTTAAATAAAGTTTTCGCAACTGAAAAGAGATTTTACAAAGTAATTATTATCATACAAGAAG
86485304 GAATATATTGTTTTTAATATACCTCACTTTGAAAGCAACAAATACAAGCTGAGATTTTACTCTAG
66 GAATATATTGTTTTTAATATACCTCACTTTGAAAGCAACAAATACAAGCTGAGATTTTACTCTAG
86485369 GTTTTTATTTTAAA
131 GTTTTTATTTTAAA
86485383 GAAGGGTTTT
Statistics
Matches: 144, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
144 144 1.00
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.37
Consensus pattern (144 bp):
CGTTTTAAATAAAGTTTTCGCAACTGAAAAGAGATTTTACAAAGTAATTATTATCATACAAGAAG
GAATATATTGTTTTTAATATACCTCACTTTGAAAGCAACAAATACAAGCTGAGATTTTACTCTAG
GTTTTTATTTTAAA
Found at i:86485735 original size:58 final size:58
Alignment explanation
Indices: 86485645--86485761 Score: 218
Period size: 58 Copynumber: 2.0 Consensus size: 58
86485635 TTTATTATTA
86485645 AGCTTGTTTAATTTCGTATACTGTAGATAGTTAGTGGGCTATTTTAGATGATTATACT
1 AGCTTGTTTAATTTCGTATACTGTAGATAGTTAGTGGGCTATTTTAGATGATTATACT
86485703 AGCTTGTTTAATTT-GATATACTGTAGATAGTTAGTGGGCTATTTTAGATGATTATACT
1 AGCTTGTTTAATTTCG-TATACTGTAGATAGTTAGTGGGCTATTTTAGATGATTATACT
86485761 A
1 A
86485762 AGGCTTTTAG
Statistics
Matches: 58, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
57 1 0.02
58 57 0.98
ACGTcount: A:0.27, C:0.08, G:0.21, T:0.44
Consensus pattern (58 bp):
AGCTTGTTTAATTTCGTATACTGTAGATAGTTAGTGGGCTATTTTAGATGATTATACT
Found at i:86487538 original size:30 final size:29
Alignment explanation
Indices: 86487495--86487558 Score: 101
Period size: 30 Copynumber: 2.2 Consensus size: 29
86487485 CAAGTAACCG
*
86487495 AAGCTAGTTAAATCGCACATTTAGTGCCA
1 AAGCTAGTTAAATCGCACACTTAGTGCCA
*
86487524 AAGCTAGTTTAAATCGTACACTTAGTGCCA
1 AAGCTAG-TTAAATCGCACACTTAGTGCCA
86487554 AAGCT
1 AAGCT
86487559 TCCGATTCAT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 7 0.22
30 25 0.78
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.28
Consensus pattern (29 bp):
AAGCTAGTTAAATCGCACACTTAGTGCCA
Found at i:86503258 original size:49 final size:49
Alignment explanation
Indices: 86503136--86503332 Score: 260
Period size: 49 Copynumber: 4.1 Consensus size: 49
86503126 ACACGTTTCG
* *
86503136 CATTAGCCATTCGGCCTTACCACATATAT-T-CATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATATACATGTTCACATTCATCA
*
86503183 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTAT--CACATATATATACATGTTCACATTCATCA
86503234 CATTGGCCATTCGGCCTTATCACATATATATACACT-TTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATATACA-TGTTCACATTCATCA
* * * * *
86503283 CATCGGCCATTAGGCCTTATCTC--ATATATGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACATATATATACATGTTCACATTCATCA
86503330 CAT
1 CAT
86503333 AGAATCCTAA
Statistics
Matches: 135, Mismatches: 9, Indels: 12
0.87 0.06 0.08
Matches are distributed among these distances:
46 1 0.01
47 41 0.30
49 56 0.41
50 1 0.01
51 36 0.27
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (49 bp):
CATTGGCCATTCGGCCTTATCACATATATATACATGTTCACATTCATCA
Found at i:86506716 original size:21 final size:21
Alignment explanation
Indices: 86506682--86506721 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
86506672 AATGGTCATG
*
86506682 GATGATTTGAGAGTGACTTAA
1 GATGATTTGAGAGTCACTTAA
**
86506703 GATGATTTTCGAGTCACTT
1 GATGATTTGAGAGTCACTT
86506722 TTGTTTAGTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.28, C:0.10, G:0.25, T:0.38
Consensus pattern (21 bp):
GATGATTTGAGAGTCACTTAA
Found at i:86507259 original size:28 final size:28
Alignment explanation
Indices: 86507226--86507344 Score: 166
Period size: 28 Copynumber: 4.2 Consensus size: 28
86507216 ATTGCATGAC
*
86507226 TATGAATGTGATTGGGCCTGACGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
*
86507254 TATGAAAGTGATTGGGCCTGATGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
*
86507282 TATGAATGTGATTGGGCCCGATGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
* * * *
86507310 TATGAATGAGATTAGGCCTAAAGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
*
86507338 AATGAAT
1 TATGAAT
86507345 AAGTACGGAT
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 81 1.00
ACGTcount: A:0.28, C:0.15, G:0.33, T:0.24
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTGATGGGCCA
Found at i:86518828 original size:40 final size:40
Alignment explanation
Indices: 86517830--86518814 Score: 1798
Period size: 40 Copynumber: 24.6 Consensus size: 40
86517820 TTGAATGATG
* * * * *
86517830 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
86517870 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
86517910 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
86517949 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
86517989 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
86518029 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
86518069 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
86518109 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
86518149 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
86518189 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
86518229 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
86518269 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
86518309 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
86518349 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
86518389 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
86518429 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
86518469 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
86518509 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
86518549 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
86518589 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
86518629 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
86518669 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
86518709 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
86518749 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
86518790 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
86518815 AACGAGGAGC
Statistics
Matches: 926, Mismatches: 14, Indels: 10
0.97 0.01 0.01
Matches are distributed among these distances:
39 35 0.04
40 881 0.95
41 10 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:86520894 original size:16 final size:16
Alignment explanation
Indices: 86520873--86520905 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
86520863 CCCTTTGCCA
86520873 TGATTAGATGATTTGT
1 TGATTAGATGATTTGT
86520889 TGATTAGATGATTTGT
1 TGATTAGATGATTTGT
86520905 T
1 T
86520906 TGATCAGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (16 bp):
TGATTAGATGATTTGT
Found at i:86523137 original size:453 final size:453
Alignment explanation
Indices: 86522276--86523140 Score: 1444
Period size: 453 Copynumber: 1.9 Consensus size: 453
86522266 CTTAGTATTT
* * *
86522276 ATCAAGTGCCGTCAAGTTTATTACAGCCGATTATGATTCCTGAGTGGAAGTGGGATAGAGTAATA
1 ATCAAATGCCGTCAAGTTTATTACAGCCGATTATGATTCCTAAGTAGAAGTGGGATAGAGTAATA
* *
86522341 ATGGATTTCGTATTAGGTTAGCCCTTATCTCTAAAAAAGAAAGATGCGATCTGGGTTGTTGTTGA
66 ATGGATTTCGTATTAGGTTAGCCCTTATCTCCAAAAAAGAAAGATGCGATCTAGGTTGTTGTTGA
* *
86522406 CAGATTGACGAAATCAACTCATTTCATTTTGGTACGTATGGATTTCTCGCTAGATAAATTAGGTA
131 CAGATTGACGAAATCAACTCATTTCATTTTGGTACATATAGATTTCTCGCTAGATAAATTAGGTA
* *
86522471 TATTTCTGAAATTGTAAGATTACATGGTGTTCCCCTATCTATTATTTCGGATAAAGATCGAAGAT
196 TATTTCTGAAATTGTAAGATTACATGGTGTTCCCCTATCTATTATTTCGGATAAAGACCCAAGAT
* *
86522536 TTACTTTGAGATTTTATAAGATATTGCAAGAAGCTTTGGGTTCAAAGCTGCATTTTTTAGCACTG
261 TTACTTCGAGATTTTAGAAGATATTGCAAGAAGCTTTGGGTTCAAAGCTGCATTTTTTAGCACTG
*
86522601 CATTTCACCCGCAAATGAATGGTCAATCCGAACAAGTTATTCAGATACTTGAGGATATGTTGCGT
326 CATTTCACCCGCAAACGAATGGTCAATCCGAACAAGTTATTCAGATACTTGAGGATATGTTGCGT
86522666 TGTTGCATTCTTGAGTTTGAAGTGTTTTGAAATGTTTGATTTGTTAGCAAGTCAAAGCTAAGC
391 TGTTGCATTCTTGAGTTTGAAGTGTTTTGAAATGTTTGATTTGTTAGCAAGTCAAAGCTAAGC
* * * *
86522729 ATCAAATGTCGTCAGGTTTATTATAGCCTATTATGATTCCTAAGTAGAAGTGGGATAGAGTAATA
1 ATCAAATGCCGTCAAGTTTATTACAGCCGATTATGATTCCTAAGTAGAAGTGGGATAGAGTAATA
* * *
86522794 ATGGATTTCGTATTAGGTTTA-CCCTTTTCTCCGAAAAAGAAAGATGTGATCTAGGTTGTTGTTG
66 ATGGATTTCGTATTAGG-TTAGCCCTTATCTCCAAAAAAGAAAGATGCGATCTAGGTTGTTGTTG
*
86522858 GCAGATTGACGAAATCAACTCATTTCATTTTGGTACATATAGATTTCTCGCTAGATAAATTAGGT
130 ACAGATTGACGAAATCAACTCATTTCATTTTGGTACATATAGATTTCTCGCTAGATAAATTAGGT
* * *
86522923 ATATTTCTGAAATTGTGAGATTACATGGTGTTCCCCTATCTATTGTTTCGGATAGAGACCCAAGA
195 ATATTTCTGAAATTGTAAGATTACATGGTGTTCCCCTATCTATTATTTCGGATAAAGACCCAAGA
* *
86522988 TTTACTTCGATATTTTGGAAGATATTGCAAGAAGCTTTGGGTTCAAAGCTGCATTTTTTAGCACT
260 TTTACTTCGAGATTTTAGAAGATATTGCAAGAAGCTTTGGGTTCAAAGCTGCATTTTTTAGCACT
* * * * *
86523053 GTATTTCACCCGCAAACGGATGGTCAATTCGATCAAGTTATTTAGATACTTGAGGATATGTTGCG
325 GCATTTCACCCGCAAACGAATGGTCAATCCGAACAAGTTATTCAGATACTTGAGGATATGTTGCG
86523118 TTGTTGCATTCTTGAGTTTGAAG
390 TTGTTGCATTCTTGAGTTTGAAG
86523141 GTAGCTGGGA
Statistics
Matches: 381, Mismatches: 30, Indels: 2
0.92 0.07 0.00
Matches are distributed among these distances:
453 378 0.99
454 3 0.01
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (453 bp):
ATCAAATGCCGTCAAGTTTATTACAGCCGATTATGATTCCTAAGTAGAAGTGGGATAGAGTAATA
ATGGATTTCGTATTAGGTTAGCCCTTATCTCCAAAAAAGAAAGATGCGATCTAGGTTGTTGTTGA
CAGATTGACGAAATCAACTCATTTCATTTTGGTACATATAGATTTCTCGCTAGATAAATTAGGTA
TATTTCTGAAATTGTAAGATTACATGGTGTTCCCCTATCTATTATTTCGGATAAAGACCCAAGAT
TTACTTCGAGATTTTAGAAGATATTGCAAGAAGCTTTGGGTTCAAAGCTGCATTTTTTAGCACTG
CATTTCACCCGCAAACGAATGGTCAATCCGAACAAGTTATTCAGATACTTGAGGATATGTTGCGT
TGTTGCATTCTTGAGTTTGAAGTGTTTTGAAATGTTTGATTTGTTAGCAAGTCAAAGCTAAGC
Found at i:86527653 original size:27 final size:26
Alignment explanation
Indices: 86527622--86527799 Score: 142
Period size: 27 Copynumber: 6.6 Consensus size: 26
86527612 TAAATTGTAC
*
86527622 AGCACTAAGTGTGCGATTCTACTTTGT
1 AGCACTAAGTGTGCGATT-TACTATGT
* * * *
86527649 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTTACTATGT
* * *
86527675 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTTACTATGT
*
86527703 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTT-ACTATGT
* *
86527731 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTT-ACTATGT
* * *
86527758 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTTACTATGT
*
86527785 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
86527800 GGCTCAATAT
Statistics
Matches: 125, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
26 1 0.01
27 100 0.80
28 24 0.19
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTTACTATGT
Found at i:86527683 original size:54 final size:54
Alignment explanation
Indices: 86527622--86527799 Score: 166
Period size: 54 Copynumber: 3.3 Consensus size: 54
86527612 TAAATTGTAC
* *
86527622 AGCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATT-TACTTTGTAGCACTAAGTGTGCGAATTGAATATGAT
* ** ** * *
86527677 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATG-T
1 AGCACTAAGTGTGCG-ATTTACTTTGTAGCACTAAGTGTGCGA-ATTGAATATGAT
* * *
86527731 AGCACTAAGTGTGCGATTTGA-TTACGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGATTT-ACTT-TGTAGCACTAAGTGTGCGAATTGAATATGAT
*
86527785 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
86527800 GGCTCAATAT
Statistics
Matches: 100, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
54 59 0.59
55 41 0.41
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (54 bp):
AGCACTAAGTGTGCGATTTACTTTGTAGCACTAAGTGTGCGAATTGAATATGAT
Found at i:86527746 original size:55 final size:54
Alignment explanation
Indices: 86527650--86527799 Score: 167
Period size: 55 Copynumber: 2.8 Consensus size: 54
86527640 CTACTTTGTT
** * *
86527650 GCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAGTTGAATATGTA-GCACTAAGTGTGCGAATTGACCACGCA
* * ** *
86527704 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAG-TTGAATATGTAGCACTAAGTGTGCGAATTGACCACGCA
* * *
86527759 GCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
86527800 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
54 37 0.45
55 44 0.54
56 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAATTGACCACGCA
Found at i:86527746 original size:82 final size:81
Alignment explanation
Indices: 86527623--86527778 Score: 208
Period size: 82 Copynumber: 1.9 Consensus size: 81
86527613 AAATTGTACA
* * *
86527623 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
86527687 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
86527704 GCACTAAGTGTGCGAGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGT
1 GCACTAAGTGTGCGA-TTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGT
*
86527768 GTGCGAGTTGA
64 GTGCGAATTGA
86527779 TTATATAGCA
Statistics
Matches: 65, Mismatches: 7, Indels: 5
0.84 0.09 0.06
Matches are distributed among these distances:
81 16 0.25
82 48 0.74
83 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:86527790 original size:82 final size:81
Alignment explanation
Indices: 86527619--86527799 Score: 204
Period size: 82 Copynumber: 2.2 Consensus size: 81
86527609 GATTAAATTG
* * *
86527619 TACAGCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
86527684 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
86527700 TGCGGCACTAAGTGTGCGAGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCAC
1 TACAGCACTAAGTGTGCGA-TTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCAC
* **
86527763 TAAGTGTGCGAGTTGATTA
63 TAAGTGTGCGAATTGACCA
* *
86527782 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
86527800 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
81 19 0.23
82 63 0.77
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:86527810 original size:27 final size:27
Alignment explanation
Indices: 86527704--86527810 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
86527694 TGACCATGCG
* * * *
86527704 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
86527732 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
86527759 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
86527786 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
86527811 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:86530068 original size:50 final size:50
Alignment explanation
Indices: 86529949--86530244 Score: 227
Period size: 50 Copynumber: 5.9 Consensus size: 50
86529939 ATTGTGATAA
* * *** * *
86529949 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTGTATGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG-T-TAGGT
* * * *
86530001 CACGTGTATAGTACTAAGTGCAGGCTACTACGTTTACTAGATAGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
** * * * * * * *
86530051 TGCATGTGTAGTACTAAGTGCAAGCTACTATGCGTACCCGACAACTTCA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAGTT-AGGT
* * * * *
86530102 CACGTGTGTAGTACTAAATGCAGGCTACTACATGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* * * * *
86530152 CACGTATGTAGTACTAATTGCAGGCTACTACGTGTACCAAATTGTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* * * * *
86530201 CGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCTGATAG
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
86530245 CTTCAGTTAC
Statistics
Matches: 188, Mismatches: 53, Indels: 9
0.75 0.21 0.04
Matches are distributed among these distances:
49 38 0.20
50 78 0.41
51 36 0.19
52 36 0.19
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
Found at i:86530130 original size:101 final size:101
Alignment explanation
Indices: 86530000--86530181 Score: 249
Period size: 101 Copynumber: 1.8 Consensus size: 101
86529990 TGGTTGTATG
* * * ** *
86530000 TCACGTGTATAGTACTAAGTGCAGGCTACTACGTTTA-CTAGATAGTTAGGTTGCATGTGTAGTA
1 TCACGTGTATAGTACTAAATGCAGGCTACTACATGTATC-AGATAGTTAGGTCACATATGTAGTA
86530064 CTAAGTGCAAGCTACTATGCGTACCCGACAACTTCAA
65 CTAAGTGCAAGCTACTATGCGTACCCGACAACTTCAA
* * *
86530101 TCACGTGTGTAGTACTAAATGCAGGCTACTACATGTATCAGATGGTTAGGTCACGTATGTAGTAC
1 TCACGTGTATAGTACTAAATGCAGGCTACTACATGTATCAGATAGTTAGGTCACATATGTAGTAC
* *
86530166 TAATTGCAGGCTACTA
66 TAAGTGCAAGCTACTA
86530182 CGTGTACCAA
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
101 68 0.99
102 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.30
Consensus pattern (101 bp):
TCACGTGTATAGTACTAAATGCAGGCTACTACATGTATCAGATAGTTAGGTCACATATGTAGTAC
TAAGTGCAAGCTACTATGCGTACCCGACAACTTCAA
Found at i:86530249 original size:150 final size:153
Alignment explanation
Indices: 86529953--86530238 Score: 398
Period size: 151 Copynumber: 1.9 Consensus size: 153
86529943 TGATAACACA
** ** * * *
86529953 TGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTGTATGTCACGTGTATAGTACTAA
1 TGTGTAGTACTAAATGCAGGCTACTACATGTATAAGATGGTTGTAGGTCACGTATATAGTACTAA
* * * *
86530018 GTGCAGGCTACTACGTTTACTAGATAGTTAGGTTGCATGTGTAGTACTAAGTGCAAGCTACTATG
66 GTGCAGGCTACTACGTGTACCAAATAGTTAGGTCGCATGTGTAGTACTAAGTGCAAGCTACTATG
86530083 CGTACCCGACAACTTCAATCACG
131 CGTACCCGACAACTTCAATCACG
* *
86530106 TGTGTAGTACTAAATGCAGGCTACTACATGTATCAGATGG-T-TAGGTCACGTATGTAGTACTAA
1 TGTGTAGTACTAAATGCAGGCTACTACATGTATAAGATGGTTGTAGGTCACGTATATAGTACTAA
* * * *
86530169 TTGCAGGCTACTACGTGTACCAAATTGTT-GGTCGCATGTGTAGTACTAAGTGTAGGCTACTATG
66 GTGCAGGCTACTACGTGTACCAAATAGTTAGGTCGCATGTGTAGTACTAAGTGCAAGCTACTATG
86530233 CGTACC
131 CGTACC
86530239 TGATAGCTTC
Statistics
Matches: 116, Mismatches: 17, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
150 38 0.33
151 43 0.37
152 1 0.01
153 34 0.29
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.32
Consensus pattern (153 bp):
TGTGTAGTACTAAATGCAGGCTACTACATGTATAAGATGGTTGTAGGTCACGTATATAGTACTAA
GTGCAGGCTACTACGTGTACCAAATAGTTAGGTCGCATGTGTAGTACTAAGTGCAAGCTACTATG
CGTACCCGACAACTTCAATCACG
Found at i:86530463 original size:16 final size:15
Alignment explanation
Indices: 86530442--86530471 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
86530432 GAATGGAGTA
86530442 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
86530458 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
86530472 TAAAACAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:86535598 original size:30 final size:30
Alignment explanation
Indices: 86535562--86535621 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
86535552 AAATTTCAAC
86535562 AAAACATATTAGCCTATACATGCCGAAATG
1 AAAACATATTAGCCTATACATGCCGAAATG
86535592 AAAACATATTAGCCTATACATGCCGAAATG
1 AAAACATATTAGCCTATACATGCCGAAATG
86535622 TTCTCCTAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.43, C:0.20, G:0.13, T:0.23
Consensus pattern (30 bp):
AAAACATATTAGCCTATACATGCCGAAATG
Found at i:86536264 original size:28 final size:28
Alignment explanation
Indices: 86536201--86536410 Score: 359
Period size: 28 Copynumber: 7.5 Consensus size: 28
86536191 ATATTAAGTC
*
86536201 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
86536228 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
86536256 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
86536284 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
86536312 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
86536340 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
86536368 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
86536397 CGCACACTTAGTGC
1 CGCACACTTAGTGC
86536411 CAATCTCATG
Statistics
Matches: 176, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
27 22 0.12
28 135 0.77
29 19 0.11
ACGTcount: A:0.34, C:0.27, G:0.12, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:86536868 original size:2 final size:2
Alignment explanation
Indices: 86536861--86536890 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
86536851 CATACTTGTG
86536861 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
86536891 CTTCGGAATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:86548483 original size:50 final size:46
Alignment explanation
Indices: 86548412--86548527 Score: 133
Period size: 46 Copynumber: 2.4 Consensus size: 46
86548402 TGTCTTCGAC
** * *
86548412 ATGGACTTACATGAATTATTCCTATCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTATCTCCAAAGCC----ATATATCTAAT
* * *
86548462 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCCATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTATCTCCAAAGCCATATATCTAAT
86548508 ATGGACTTACATGGCTCATT
1 ATGGACTTACATGGCTCATT
86548528 TCTGTCCTAT
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
46 29 0.50
50 29 0.50
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
ATGGACTTACATGGCTCATTCCTATCTCCAAAGCCATATATCTAAT
Found at i:86549742 original size:43 final size:42
Alignment explanation
Indices: 86549676--86549832 Score: 160
Period size: 43 Copynumber: 3.7 Consensus size: 42
86549666 AGCTCGTACA
*
86549676 ATGCCAAC-GTCCTAGACGAGGTCTTACATGTAATCAAATATCG
1 ATGCC-ACTGTCCCAGACGAGGTCTTACATGTAATCAAATAT-G
* * * *
86549719 ATGCCACTATCCTAGACGGGGTCTTACATGAAATCAAATATG
1 ATGCCACTGTCCCAGACGAGGTCTTACATGTAATCAAATATG
*
86549761 ATGCCGCTGTCCCAGAC-ATGGTCTTACATGTAAATCATAA-ATTG
1 ATGCCACTGTCCCAGACGA-GGTCTTACATGT-AATCA-AATA-TG
*
86549805 ATGCCAAC-GTCCCAGACGCGGTCTTACA
1 ATGCC-ACTGTCCCAGACGAGGTCTTACA
86549833 CGAAAACACA
Statistics
Matches: 97, Mismatches: 10, Indels: 13
0.81 0.08 0.11
Matches are distributed among these distances:
42 28 0.29
43 41 0.42
44 27 0.28
45 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (42 bp):
ATGCCACTGTCCCAGACGAGGTCTTACATGTAATCAAATATG
Found at i:86559023 original size:42 final size:43
Alignment explanation
Indices: 86558919--86559033 Score: 144
Period size: 43 Copynumber: 2.7 Consensus size: 43
86558909 AAAGCTCGTA
* * *
86558919 CAATGCCAATGTCCCAGACGTGGTCTTACATGTAACCAAATAT
1 CAATGCCAATGTCCTAGACATGGTCTTACATGAAACCAAATAT
* * *
86558962 CAATGCCACTGT-CTCAGACAAGGTCTTACATGAAATCAAATA-
1 CAATGCCAATGTCCT-AGACATGGTCTTACATGAAACCAAATAT
*
86559004 CGATGCCAATGTCCTAGACATGGTCTTACA
1 CAATGCCAATGTCCTAGACATGGTCTTACA
86559034 CATAAATCAT
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
42 25 0.41
43 36 0.59
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (43 bp):
CAATGCCAATGTCCTAGACATGGTCTTACATGAAACCAAATAT
Found at i:86561104 original size:357 final size:357
Alignment explanation
Indices: 86560449--86561153 Score: 1365
Period size: 357 Copynumber: 2.0 Consensus size: 357
86560439 TTCACCCCTA
*
86560449 TTTCACCTTAATGACAGTCACTTAACTTTGTGGTTGCCGAATGTTGCTAGGGGCGTGATCTCCAT
1 TTTCACCTTAATGACAGTCACTTAACTTTGTGGTTGCCGAATGTTGCTAGGGGCGCGATCTCCAT
* *
86560514 AGTCAAGGGGGTTAGGCCAATTATCCTTTCACAATAAGTAATCCTGTCACTCGTGGTAAGTACTT
66 AGTCAAGGGGGTTAGGCCAATTATCCTTTCACAATAAGTAATCCTATCACTCATGGTAAGTACTT
86560579 TAGGTATTATTTATATTTACAAGGGATTATAACTTCTGATGAATCGGTTAACTGTTTCAGATAAA
131 TAGGTATTATTTATATTTACAAGGGATTATAACTTCTGATGAATCGGTTAACTGTTTCAGATAAA
86560644 GGTTAAAGTTTTGGAGAGAGTTCGTGGGGTGTGGAGCAAAAAGGTCTGGTGATTGGTGGATTGGT
196 GGTTAAAGTTTTGGAGAGAGTTCGTGGGGTGTGGAGCAAAAAGGTCTGGTGATTGGTGGATTGGT
**
86560709 AAGTAGCAATGAGTAAGTTAGAGTGATTTCAATACTTTGGTTTTGGATTTATCACGGATGTGACT
261 AAGTAGCAATGAGTAAGTTAGAGTGATTTCAATACTTTGGTTTTGGATTTATCACAAATGTGACT
86560774 AATGGTGGATCATTGTGAATCATTGGTAACTG
326 AATGGTGGATCATTGTGAATCATTGGTAACTG
86560806 TTTCACCTTAATGACAGTCACTTAACTTTGTGGTTGCCGAATGTTGCTAGGGGCGCGATCTCCAT
1 TTTCACCTTAATGACAGTCACTTAACTTTGTGGTTGCCGAATGTTGCTAGGGGCGCGATCTCCAT
86560871 AGTCAAGGGGGTTAGGCCAATTATCCTTTCACAATAAGTAATCCTATCACTCATGGTAAGTACTT
66 AGTCAAGGGGGTTAGGCCAATTATCCTTTCACAATAAGTAATCCTATCACTCATGGTAAGTACTT
86560936 TAGGTATTATTTATATTTACAAGGGATTATAACTTCTGATGAATCGGTTAACTGTTTCAGATAAA
131 TAGGTATTATTTATATTTACAAGGGATTATAACTTCTGATGAATCGGTTAACTGTTTCAGATAAA
86561001 GGTTAAAGTTTTGGAGAGAGTTCGTGGGGTGTGGAGCAAAAAGGTCTGGTGATTGGTGGATTGGT
196 GGTTAAAGTTTTGGAGAGAGTTCGTGGGGTGTGGAGCAAAAAGGTCTGGTGATTGGTGGATTGGT
86561066 AAGTAGCAATGAGTAAGTTAGAGTGATTTCAATACTTTGGTTTTGGATTTATCACAAATGTGACT
261 AAGTAGCAATGAGTAAGTTAGAGTGATTTCAATACTTTGGTTTTGGATTTATCACAAATGTGACT
86561131 AATGGTGGATCATTGTGAATCAT
326 AATGGTGGATCATTGTGAATCAT
86561154 AGGTGCTTTG
Statistics
Matches: 343, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
357 343 1.00
ACGTcount: A:0.27, C:0.13, G:0.25, T:0.35
Consensus pattern (357 bp):
TTTCACCTTAATGACAGTCACTTAACTTTGTGGTTGCCGAATGTTGCTAGGGGCGCGATCTCCAT
AGTCAAGGGGGTTAGGCCAATTATCCTTTCACAATAAGTAATCCTATCACTCATGGTAAGTACTT
TAGGTATTATTTATATTTACAAGGGATTATAACTTCTGATGAATCGGTTAACTGTTTCAGATAAA
GGTTAAAGTTTTGGAGAGAGTTCGTGGGGTGTGGAGCAAAAAGGTCTGGTGATTGGTGGATTGGT
AAGTAGCAATGAGTAAGTTAGAGTGATTTCAATACTTTGGTTTTGGATTTATCACAAATGTGACT
AATGGTGGATCATTGTGAATCATTGGTAACTG
Found at i:86579296 original size:39 final size:40
Alignment explanation
Indices: 86579201--86579462 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
86579191 TTGAATGATG
*
86579201 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
86579239 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
86579280 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
86579319 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
86579358 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
86579397 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
86579436 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
86579463 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:86581121 original size:42 final size:42
Alignment explanation
Indices: 86581074--86581177 Score: 172
Period size: 42 Copynumber: 2.5 Consensus size: 42
86581064 TATCGGGATG
* * *
86581074 TGAGATTCATGTAAGACCATGACTGGGACATTTGCATCGATA
1 TGAGATTCGTGTAAGACCATGACTAGGACATTGGCATCGATA
*
86581116 TGAGATTCGTGTAAGACCATGTCTAGGACATTGGCATCGATA
1 TGAGATTCGTGTAAGACCATGACTAGGACATTGGCATCGATA
86581158 TGAGATTCGTGTAAGACCAT
1 TGAGATTCGTGTAAGACCAT
86581178 AGCTAAGCTA
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 58 1.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (42 bp):
TGAGATTCGTGTAAGACCATGACTAGGACATTGGCATCGATA
Found at i:86581191 original size:42 final size:42
Alignment explanation
Indices: 86581074--86581199 Score: 159
Period size: 42 Copynumber: 3.0 Consensus size: 42
86581064 TATCGGGATG
* * ** *
86581074 TGAGATTCATGTAAGACCATGACTGGGACATTTGCATCGATA
1 TGAGATTCGTGTAAGACCATGTCTAAGACATTGGCATCGATA
*
86581116 TGAGATTCGTGTAAGACCATGTCTAGGACATTGGCATCGATA
1 TGAGATTCGTGTAAGACCATGTCTAAGACATTGGCATCGATA
86581158 TGAGATTCGTGTAAGACCATAG-CTAAG-CTATTGG-ATCGATA
1 TGAGATTCGTGTAAGACCAT-GTCTAAGAC-ATTGGCATCGATA
86581199 T
1 T
86581200 ACTATAACAT
Statistics
Matches: 77, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
41 9 0.12
42 67 0.87
43 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (42 bp):
TGAGATTCGTGTAAGACCATGTCTAAGACATTGGCATCGATA
Found at i:86582112 original size:21 final size:21
Alignment explanation
Indices: 86582086--86582142 Score: 60
Period size: 24 Copynumber: 2.5 Consensus size: 21
86582076 ATGGTATAAG
86582086 GTTGATGAATTGGTACATTTT
1 GTTGATGAATTGGTACATTTT
*
86582107 GTTGATGATGAATTGGTATATTTT
1 G-T--TGATGAATTGGTACATTTT
*
86582131 GTGGCATGAATT
1 GTTG-ATGAATT
86582143 ATATGATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
21 2 0.07
22 8 0.27
23 1 0.03
24 19 0.63
ACGTcount: A:0.25, C:0.04, G:0.26, T:0.46
Consensus pattern (21 bp):
GTTGATGAATTGGTACATTTT
Found at i:86588432 original size:29 final size:28
Alignment explanation
Indices: 86588396--86588473 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
86588386 TCATGAGATT
86588396 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
86588426 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
86588453 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
86588474 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:86588691 original size:174 final size:174
Alignment explanation
Indices: 86588426--86588753 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
86588416 AAATTGTACA
*
86588426 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* * *
86588491 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTATCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
86588556 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
86588600 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
86588665 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
86588730 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
86588754 ACCTTGAGTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:86591410 original size:14 final size:12
Alignment explanation
Indices: 86591378--86591423 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
86591368 TTTTGGATGA
*
86591378 ATTTAATTGAAT
1 ATTTAATTTAAT
86591390 ATTTAATTTAAT
1 ATTTAATTTAAT
86591402 AAGTTTAATTT-AT
1 -A-TTTAATTTAAT
86591415 A-TTAATTTA
1 ATTTAATTTA
86591424 GATCAAGAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
10 7 0.23
12 12 0.40
13 3 0.10
14 8 0.27
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.54
Consensus pattern (12 bp):
ATTTAATTTAAT
Found at i:86598507 original size:26 final size:26
Alignment explanation
Indices: 86598436--86598583 Score: 212
Period size: 26 Copynumber: 5.8 Consensus size: 26
86598426 CCTCTTTAAT
* **
86598436 AACTGGGGCA-GAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
86598461 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
86598486 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
* ***
86598512 AAATGGGGCATAAGCCCTTTTTGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
86598538 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
86598564 AACTGGGGCAT-AGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
86598584 GCACTTCCTC
Statistics
Matches: 111, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
25 41 0.37
26 70 0.63
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:86598658 original size:20 final size:20
Alignment explanation
Indices: 86598633--86598727 Score: 151
Period size: 20 Copynumber: 4.8 Consensus size: 20
86598623 TTATGAATAC
86598633 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
86598653 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
86598673 ATCATGTACATATCATACAT
1 ATCATGTGCATATCATACAT
86598693 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
86598713 ATCATGT--ATATCATA
1 ATCATGTGCATATCATA
86598728 TCCTACGTAT
Statistics
Matches: 72, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
18 8 0.11
20 62 0.86
21 2 0.03
ACGTcount: A:0.37, C:0.19, G:0.08, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:86598664 original size:11 final size:11
Alignment explanation
Indices: 86598633--86598720 Score: 84
Period size: 9 Copynumber: 8.7 Consensus size: 11
86598623 TTATGAATAC
*
86598633 ATCATGTGCAT
1 ATCATGTACAT
86598644 ATCA--TACAT
1 ATCATGTACAT
*
86598653 ATCATGTGCAT
1 ATCATGTACAT
86598664 ATCA--TACAT
1 ATCATGTACAT
86598673 ATCATGTACAT
1 ATCATGTACAT
86598684 ATCA--TACAT
1 ATCATGTACAT
*
86598693 ATCATGTGCAT
1 ATCATGTACAT
*
86598704 ATCATAT-CA-
1 ATCATGTACAT
86598713 ATCATGTA
1 ATCATGTA
86598721 TATCATATCC
Statistics
Matches: 64, Mismatches: 6, Indels: 15
0.75 0.07 0.18
Matches are distributed among these distances:
9 31 0.48
10 2 0.03
11 31 0.48
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.35
Consensus pattern (11 bp):
ATCATGTACAT
Found at i:86606781 original size:26 final size:26
Alignment explanation
Indices: 86606710--86606857 Score: 221
Period size: 26 Copynumber: 5.8 Consensus size: 26
86606700 CCTCTTTAAT
* * *
86606710 AACTGGGGCA-GAGCCCTTTTTAGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
86606735 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
86606760 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
* **
86606786 AACTGGGGCATAAGCCATTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
86606812 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
86606838 AACTGGGGCATAA-CCCTTTT
1 AACTGGGGCATAAGCCCTTTT
86606858 GCACTTCCTC
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
25 39 0.35
26 74 0.65
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:86607031 original size:24 final size:25
Alignment explanation
Indices: 86606969--86607040 Score: 101
Period size: 25 Copynumber: 2.9 Consensus size: 25
86606959 ATAATTAAAC
* **
86606969 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGTAAAACAGTCATTTTTA
86606994 CCTAGGGGTAAAACAGTCATTTTTA
1 CCTAGGGGTAAAACAGTCATTTTTA
*
86607019 CCTAGGGG-CAAACAGTCATTTT
1 CCTAGGGGTAAAACAGTCATTTT
86607041 CATAATATAG
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
24 13 0.30
25 30 0.70
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (25 bp):
CCTAGGGGTAAAACAGTCATTTTTA
Found at i:86608059 original size:128 final size:128
Alignment explanation
Indices: 86607793--86608052 Score: 502
Period size: 128 Copynumber: 2.0 Consensus size: 128
86607783 AGATTTAAAG
*
86607793 AAGAACCCAATAAGGCCTATCCCCACATTCGGCCACCTCCCTAACCTATAGGGGTTTCGGCTTTT
1 AAGAACCCAATAAGGCCTATACCCACATTCGGCCACCTCCCTAACCTATAGGGGTTTCGGCTTTT
*
86607858 CTTAACCTCCATAATACCGAATTGATTAAGGCCACGAGCACTTACCAAGGTTCACCTACCCAA
66 CTTAACCTCCATAATACCGAATTGATTAAGGCCACGAGCACTTACCAACGTTCACCTACCCAA
86607921 AAGAACCCAATAAGGCCTATACCCACATTCGGCCACCTCCCTAACCTATAGGGGTTTCGGCTTTT
1 AAGAACCCAATAAGGCCTATACCCACATTCGGCCACCTCCCTAACCTATAGGGGTTTCGGCTTTT
86607986 CTTAACCTCCATAATACCGAATTGATTAAGGCCACGAGCACTTACCAACGTTCACCTACCCAA
66 CTTAACCTCCATAATACCGAATTGATTAAGGCCACGAGCACTTACCAACGTTCACCTACCCAA
86608049 AAGA
1 AAGA
86608053 TTCCAATCCC
Statistics
Matches: 130, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
128 130 1.00
ACGTcount: A:0.30, C:0.32, G:0.15, T:0.23
Consensus pattern (128 bp):
AAGAACCCAATAAGGCCTATACCCACATTCGGCCACCTCCCTAACCTATAGGGGTTTCGGCTTTT
CTTAACCTCCATAATACCGAATTGATTAAGGCCACGAGCACTTACCAACGTTCACCTACCCAA
Found at i:86612814 original size:39 final size:40
Alignment explanation
Indices: 86612719--86612980 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
86612709 TTGAATGATG
*
86612719 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
86612757 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
86612798 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
86612837 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
86612876 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
86612915 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
86612954 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
86612981 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:86621185 original size:29 final size:28
Alignment explanation
Indices: 86621149--86621226 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
86621139 TCATGAGATT
86621149 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
86621179 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
86621206 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
86621227 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:86621444 original size:174 final size:174
Alignment explanation
Indices: 86621179--86621506 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
86621169 AAATTGTACA
*
86621179 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* * *
86621244 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTATCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
86621309 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
86621353 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
86621418 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
86621483 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
86621507 ACCTTGAGTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:86623330 original size:56 final size:57
Alignment explanation
Indices: 86623258--86623367 Score: 161
Period size: 56 Copynumber: 1.9 Consensus size: 57
86623248 TAGGATTTCG
* *
86623258 ATATGTGATGTGCGAGTAAGACCATGT-TTATAC-GTTGGCATCGATATGTGATTCCA
1 ATATGTGATGTGCGAGTAAGACCATGTCTGAGACAG-TGGCATCGATATGTGATTCCA
* *
86623314 ATATGTGATGTGCGAGTAAGACCCTGTCTGGGACAGTGGCATCGATATGTGATT
1 ATATGTGATGTGCGAGTAAGACCATGTCTGAGACAGTGGCATCGATATGTGATT
86623368 ACATGTAAGA
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
56 26 0.54
57 21 0.44
58 1 0.02
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (57 bp):
ATATGTGATGTGCGAGTAAGACCATGTCTGAGACAGTGGCATCGATATGTGATTCCA
Found at i:86629198 original size:28 final size:28
Alignment explanation
Indices: 86629167--86629250 Score: 74
Period size: 28 Copynumber: 3.2 Consensus size: 28
86629157 AATTTCAATC
86629167 ACGTGTGTAGTACTAAGTGCAGGGTACT
1 ACGTGTGTAGTACTAAGTGCAGGGTACT
* * *
86629195 ACGTGTATCAG-A-T-GGT-TA-GGT--T
1 ACGTGTGT-AGTACTAAGTGCAGGGTACT
*
86629217 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGGTACT
86629245 ACGTGT
1 ACGTGT
86629251 ACCGGATAAT
Statistics
Matches: 41, Mismatches: 7, Indels: 16
0.64 0.11 0.25
Matches are distributed among these distances:
21 2 0.05
22 9 0.22
23 1 0.02
24 5 0.12
25 2 0.05
26 4 0.10
27 1 0.02
28 15 0.37
29 2 0.05
ACGTcount: A:0.24, C:0.14, G:0.31, T:0.31
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGGTACT
Found at i:86629245 original size:50 final size:50
Alignment explanation
Indices: 86629119--86629307 Score: 220
Period size: 50 Copynumber: 3.8 Consensus size: 50
86629109 TGAGGTCGCA
* * *
86629119 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAATTTCA-ATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT-AGGTCACG
* * ** *
86629170 TGTGTAGTACTAAGTGCAGGGTACTACGTGTATCAGATGGTTAGGTTACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACG
* * *
86629220 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACG
* **
86629269 TGTGTAGTACTATGTGCAGGCTACTATTTGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
86629308 GCTTTGGCTA
Statistics
Matches: 117, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 40 0.34
50 43 0.37
51 34 0.29
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.32
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACG
Found at i:86631062 original size:13 final size:13
Alignment explanation
Indices: 86631044--86631069 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
86631034 GTTCACAGTC
86631044 CATTTTAAAAATT
1 CATTTTAAAAATT
86631057 CATTTTAAAAATT
1 CATTTTAAAAATT
86631070 TCCAGACAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (13 bp):
CATTTTAAAAATT
Found at i:86634691 original size:44 final size:43
Alignment explanation
Indices: 86634628--86634748 Score: 122
Period size: 43 Copynumber: 2.8 Consensus size: 43
86634618 TCGAAATGTG
* * **
86634628 ATATTCGGGCCTCA-GCCTAGCAAGCTTTAA-GCTGGTGA-ATA
1 ATATT-GGGCTTCAGGCCTAGCAAGCTATAATGCCAGTGAGATA
* *
86634669 ATATTATCGGGCTTCGGGCCTAGCAGGCTATAATGCCAGTGAGATA
1 ATA-T-T-GGGCTTCAGGCCTAGCAAGCTATAATGCCAGTGAGATA
*
86634715 ATATTGGGCTTCAGGCCTAGCAGGCTATAATGCC
1 ATATTGGGCTTCAGGCCTAGCAAGCTATAATGCC
86634749 GATGAAATGA
Statistics
Matches: 68, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
41 3 0.04
42 1 0.01
43 36 0.53
44 15 0.22
45 7 0.10
46 6 0.09
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (43 bp):
ATATTGGGCTTCAGGCCTAGCAAGCTATAATGCCAGTGAGATA
Found at i:86634776 original size:43 final size:43
Alignment explanation
Indices: 86634686--86634782 Score: 124
Period size: 43 Copynumber: 2.3 Consensus size: 43
86634676 CGGGCTTCGG
* * * * *
86634686 GCCTAGCAGGCTATAATGCCAGTGAGATAATATTGGGCTTCAG
1 GCCTAGCAGGCTATAATGCCAGTGAAATAATATCGAGCGTCAA
*
86634729 GCCTAGCAGGCTATAATGCC-GATGAAATGATATCGAGCGTCAA
1 GCCTAGCAGGCTATAATGCCAG-TGAAATAATATCGAGCGTCAA
86634772 GCCTAGCAGGC
1 GCCTAGCAGGC
86634783 GAAATTTCGG
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
42 1 0.02
43 46 0.98
ACGTcount: A:0.29, C:0.22, G:0.28, T:0.22
Consensus pattern (43 bp):
GCCTAGCAGGCTATAATGCCAGTGAAATAATATCGAGCGTCAA
Found at i:86640778 original size:20 final size:18
Alignment explanation
Indices: 86640753--86640789 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
86640743 ACCTAAAACG
86640753 AATTAAATTTAAGACATATT
1 AATTAAA-TTAA-ACATATT
86640773 AATTAAATTAAACATAT
1 AATTAAATTAAACATAT
86640790 CAACATCACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 4 0.24
20 7 0.41
ACGTcount: A:0.54, C:0.05, G:0.03, T:0.38
Consensus pattern (18 bp):
AATTAAATTAAACATATT
Found at i:86652613 original size:22 final size:22
Alignment explanation
Indices: 86652585--86652626 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
86652575 AAATAAATAC
* *
86652585 TTAAATTTTGGGGCGTTACAAG
1 TTAAATTTTAGGGCATTACAAG
86652607 TTAAATTTTAGGGCATTACA
1 TTAAATTTTAGGGCATTACA
86652627 GGAATAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (22 bp):
TTAAATTTTAGGGCATTACAAG
Found at i:86652732 original size:14 final size:15
Alignment explanation
Indices: 86652710--86652738 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
86652700 ACATATGCTC
86652710 TCTT-TTTTTCTTTT
1 TCTTATTTTTCTTTT
86652724 TCTTATTTTTCTTTT
1 TCTTATTTTTCTTTT
86652739 CACGACCATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 4 0.29
15 10 0.71
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83
Consensus pattern (15 bp):
TCTTATTTTTCTTTT
Found at i:86657981 original size:47 final size:47
Alignment explanation
Indices: 86657909--86658367 Score: 846
Period size: 47 Copynumber: 9.8 Consensus size: 47
86657899 NNNNNNNNNN
*
86657909 GATGTGATGAATGTGAAAGTTTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
86657956 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
86658003 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
86658050 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
86658097 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
86658144 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
86658191 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
86658238 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
* * *
86658285 GATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
* * * *
86658332 AACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAG
86658368 TCCCGAAGGG
Statistics
Matches: 403, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 403 1.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
Found at i:86662149 original size:50 final size:50
Alignment explanation
Indices: 86662021--86662355 Score: 329
Period size: 50 Copynumber: 6.7 Consensus size: 50
86662011 ATTCGTTGTG
* * * * *
86662021 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACTCATTAACTTTG
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CA-GATCGTTA
* * *
86662073 A-TCACGTGTGTATTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATCGTTA
* * * *
86662122 AGTCACGTGTGTAGTAGTAAGTGCAGGCTACTACGTGTACCAAATTGATA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATCGTTA
* * * * * * *
86662172 GGTCGCAG-GTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGTTAACTTTA
1 AGTCAC-GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG--ATCGTTA
* * *
86662224 A-TCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGA-CGGTTA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATC-GTTA
* * *
86662273 AGTCACGTGTGTAGTACTAAGTGTAGGCT-CTTACGTGTACCAGATTGATA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTAC-TACGTGTACCAGATCGTTA
* *
86662323 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
86662356 TACATACCAG
Statistics
Matches: 232, Mismatches: 41, Indels: 22
0.79 0.14 0.07
Matches are distributed among these distances:
48 1 0.00
49 10 0.04
50 147 0.63
51 70 0.30
52 4 0.02
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (50 bp):
AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATCGTTA
Found at i:86662285 original size:101 final size:99
Alignment explanation
Indices: 86662021--86662355 Score: 318
Period size: 101 Copynumber: 3.3 Consensus size: 99
86662011 ATTCGTTGTG
* * *
86662021 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACTCATTAACTTTGA-TCACGTGTGTA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCA--AACGTTAAGTCACGTGTGTA
* * * **
86662085 TTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTA
63 GTACTAAGTGCAGGCTACTACGCGTACCAGAACGTTA
* * * * * *
86662122 AGTCACGTGTGTAGTAGTAAGTGCAGGCTACTACGTGTACCAAATTGATAGGTCGCAG-GTGTAG
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAA-CGTTAAGTCAC-GTGTGTAG
* * *
86662186 TACTAAGTGCAGGCTACTATGCGTACCTGTTAACTTTA
64 TACTAAGTGCAGGCTACTACGCGTACCAG--AACGTTA
* * *
86662224 A-TCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGACGGTTAAGTCACGTGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAAC-GTTAAGTCACGTGTGTAGT
* * ** *
86662288 ACTAAGTGTAGGCT-CTTACGTGTACCAGATTGATA
65 ACTAAGTGCAGGCTAC-TACGCGTACCAGAACGTTA
* *
86662323 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
86662356 TACATACCAG
Statistics
Matches: 189, Mismatches: 36, Indels: 19
0.77 0.15 0.08
Matches are distributed among these distances:
98 2 0.01
99 4 0.02
100 67 0.35
101 111 0.59
102 5 0.03
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (99 bp):
AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAACGTTAAGTCACGTGTGTAGTA
CTAAGTGCAGGCTACTACGCGTACCAGAACGTTA
Found at i:86662308 original size:151 final size:151
Alignment explanation
Indices: 86662029--86662356 Score: 516
Period size: 151 Copynumber: 2.2 Consensus size: 151
86662019 TGAGTCACGT
* * * *
86662029 GTGTAGTACTAAGTGCAGGCTACTATGTGTACTCATTAACTTTGATCACGTGTGTATTACTAAGT
1 GTGTAGTACTAAGTGCAGGCTACTATGCGTACTCATTAACTTTAATCACATGTGTAGTACTAAGT
* *
86662094 GCAGGCTACTACGTGTATCAGATGGTTAAGTCACGTGTGTAGTAGTAAGTGCAGGCTACTACGTG
66 GCAGGCTACTACGTGTATCAGACGGTTAAGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTG
*
86662159 TACCAAATTGATAGGTCGCAG
131 TACCAAATTGATAGGTCACAG
*
86662180 GTGTAGTACTAAGTGCAGGCTACTATGCGTAC-CTGTTAACTTTAATCACATGTGTAGTACTAAG
1 GTGTAGTACTAAGTGCAGGCTACTATGCGTACTC-ATTAACTTTAATCACATGTGTAGTACTAAG
* *
86662244 TGTAGGCTACTACGTGTATCAGACGGTTAAGTCACGTGTGTAGTACTAAGTGTAGGCT-CTTACG
65 TGCAGGCTACTACGTGTATCAGACGGTTAAGTCACGTGTGTAGTACTAAGTGCAGGCTAC-TACG
* *
86662308 TGTACCAGATTGATAGGTCACAT
129 TGTACCAAATTGATAGGTCACAG
86662331 GTGTAGTACTAAGTGCAGGCTACTAT
1 GTGTAGTACTAAGTGCAGGCTACTAT
86662357 ACATACCAGA
Statistics
Matches: 163, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
150 2 0.01
151 161 0.99
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (151 bp):
GTGTAGTACTAAGTGCAGGCTACTATGCGTACTCATTAACTTTAATCACATGTGTAGTACTAAGT
GCAGGCTACTACGTGTATCAGACGGTTAAGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTG
TACCAAATTGATAGGTCACAG
Found at i:86664324 original size:16 final size:16
Alignment explanation
Indices: 86664303--86664333 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
86664293 GCATGGCTTT
86664303 CTATTTCTTTTATTAC
1 CTATTTCTTTTATTAC
*
86664319 CTATTTGTTTTATTA
1 CTATTTCTTTTATTA
86664334 TACTTTATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.13, G:0.03, T:0.65
Consensus pattern (16 bp):
CTATTTCTTTTATTAC
Found at i:86667213 original size:27 final size:27
Alignment explanation
Indices: 86667175--86667712 Score: 466
Period size: 27 Copynumber: 20.0 Consensus size: 27
86667165 AAACATACAT
* *
86667175 CACATAAGGGTAAAATAATCATCTTAC
1 CACATAAGGGTAAAACAATCATTTTAC
* * *
86667202 CATAAAAGGGTAAAACAGTCATTTTAC
1 CACATAAGGGTAAAACAATCATTTTAC
* *
86667229 CACATAAGGGCAAAAAAATCATTTTAC
1 CACATAAGGGTAAAACAATCATTTTAC
*
86667256 CACATAAGGGAAAAACAATCATTTTAC
1 CACATAAGGGTAAAACAATCATTTTAC
* * *
86667283 CTCATAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGTAAAACAATCATTTTAC
* * *
86667310 CACATAATGGCAAAACAGTCATTTTAC
1 CACATAAGGGTAAAACAATCATTTTAC
* * * * *
86667337 CTCATAAAGGCAAAACAGTCATTATAC
1 CACATAAGGGTAAAACAATCATTTTAC
* * * * *
86667364 CTCATAAAGGCAAAACAGTCATTATAC
1 CACATAAGGGTAAAACAATCATTTTAC
* * * *
86667391 CTCACAAGGGTAAAATAGTCATTTTAC
1 CACATAAGGGTAAAACAATCATTTTAC
* * * *
86667418 CAAATAAGGGCAAAACAGTTATTTTAC
1 CACATAAGGGTAAAACAATCATTTTAC
* *
86667445 CTCATAAGGGCAAAACAATCATTTTAC
1 CACATAAGGGTAAAACAATCATTTTAC
* * *
86667472 CACAAAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGTAAAACAATCATTTTAC
* * * * *
86667499 CTCACAAAGGCAAAATAATCATTTTAC
1 CACATAAGGGTAAAACAATCATTTTAC
* * * * *
86667526 CTCATAAAGGAAAAATAGTCA-TTTAC
1 CACATAAGGGTAAAACAATCATTTTAC
* * *
86667552 CACATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGTAAAACAATCATTTTAC
* * * * *
86667579 CTCACAAGGGCAAAACAGTTATTTTAC
1 CACATAAGGGTAAAACAATCATTTTAC
* *
86667606 CTCATAAGGGCAAAACAATCATTTTAC
1 CACATAAGGGTAAAACAATCATTTTAC
* * *
86667633 CACAAAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGTAAAACAATCATTTTAC
* * * * *
86667660 CTCACAAGGGCAAAACAGTTATTTTAC
1 CACATAAGGGTAAAACAATCATTTTAC
* *
86667687 CTCATAAGGGCAAAACAATCATTTTA
1 CACATAAGGGTAAAACAATCATTTTA
86667713 TTAATTTGGG
Statistics
Matches: 445, Mismatches: 65, Indels: 2
0.87 0.13 0.00
Matches are distributed among these distances:
26 23 0.05
27 422 0.95
ACGTcount: A:0.43, C:0.20, G:0.13, T:0.25
Consensus pattern (27 bp):
CACATAAGGGTAAAACAATCATTTTAC
Found at i:86667249 original size:54 final size:54
Alignment explanation
Indices: 86667177--86667712 Score: 648
Period size: 54 Copynumber: 9.9 Consensus size: 54
86667167 ACATACATCA
* * * * * *
86667177 CATAAGGGTAAAATAATCATCTTACCATAAAAGGGTAAAACAGTCATTTTACCA
1 CATAAGGGCAAAACAATCATTTTACCACAAAAGGGCAAAACAGTCATTTTACCT
* * * *
86667231 CATAAGGGCAAAAAAATCATTTTACCACATAAGGGAAAAACAATCATTTTACCT
1 CATAAGGGCAAAACAATCATTTTACCACAAAAGGGCAAAACAGTCATTTTACCT
* * *
86667285 CATAAGGGCAAAACAGTCATTTTACCACATAATGGCAAAACAGTCATTTTACCT
1 CATAAGGGCAAAACAATCATTTTACCACAAAAGGGCAAAACAGTCATTTTACCT
* * * * *
86667339 CATAAAGGCAAAACAGTCATTATACCTCATAAA-GGCAAAACAGTCATTATACCT
1 CATAAGGGCAAAACAATCATTTTACCACA-AAAGGGCAAAACAGTCATTTTACCT
* * * * *
86667393 CACAAGGGTAAAATAGTCATTTTACCA-AATAAGGGCAAAACAGTTATTTTACCT
1 CATAAGGGCAAAACAATCATTTTACCACAA-AAGGGCAAAACAGTCATTTTACCT
86667447 CATAAGGGCAAAACAATCATTTTACCACAAAAGGGCAAAACAGTCATTTTACCT
1 CATAAGGGCAAAACAATCATTTTACCACAAAAGGGCAAAACAGTCATTTTACCT
* * * * * * *
86667501 CACAAAGGCAAAATAATCATTTTACCTCATAAA-GGAAAAATAGTCA-TTTACCA
1 CATAAGGGCAAAACAATCATTTTACCACA-AAAGGGCAAAACAGTCATTTTACCT
* * * * *
86667554 CATAAGGGCAAAATAGTCATTTTACCTCACAAGGGCAAAACAGTTATTTTACCT
1 CATAAGGGCAAAACAATCATTTTACCACAAAAGGGCAAAACAGTCATTTTACCT
86667608 CATAAGGGCAAAACAATCATTTTACCACAAAAGGGCAAAACAGTCATTTTACCT
1 CATAAGGGCAAAACAATCATTTTACCACAAAAGGGCAAAACAGTCATTTTACCT
* * * * * *
86667662 CACAAGGGCAAAACAGTTATTTTACCTCATAAGGGCAAAACAATCATTTTA
1 CATAAGGGCAAAACAATCATTTTACCACAAAAGGGCAAAACAGTCATTTTA
86667713 TTAATTTGGG
Statistics
Matches: 418, Mismatches: 57, Indels: 14
0.85 0.12 0.03
Matches are distributed among these distances:
52 3 0.01
53 45 0.11
54 363 0.87
55 7 0.02
ACGTcount: A:0.43, C:0.20, G:0.13, T:0.25
Consensus pattern (54 bp):
CATAAGGGCAAAACAATCATTTTACCACAAAAGGGCAAAACAGTCATTTTACCT
Found at i:86667310 original size:81 final size:81
Alignment explanation
Indices: 86667207--86667712 Score: 690
Period size: 81 Copynumber: 6.3 Consensus size: 81
86667197 CTTACCATAA
* * * * *
86667207 AAGGGTAAAACAGTCATTTTACCACATAAGGGCAAAAAAATCATTTTACCACATAAGGGAAAAAC
1 AAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAACAGTCATTTTACCTCATAAGGGCAAAAC
*
86667272 AATCATTTTACCTCAT
66 AGTCATTTTACCTCAT
* *
86667288 AAGGGCAAAACAGTCATTTTACCACATAATGGCAAAACAGTCATTTTACCTCATAAAGGCAAAAC
1 AAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAACAGTCATTTTACCTCATAAGGGCAAAAC
*
86667353 AGTCATTATACCTCAT
66 AGTCATTTTACCTCAT
* * * * * * **
86667369 AAAGGCAAAACAGTCATTATACCTCACAAGGGTAAAATAGTCATTTTACCAAATAAGGGCAAAAC
1 AAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAACAGTCATTTTACCTCATAAGGGCAAAAC
*
86667434 AGTTATTTTACCTCAT
66 AGTCATTTTACCTCAT
* * * * *
86667450 AAGGGCAAAACAATCATTTTACCACAAAAGGGCAAAACAGTCATTTTACCTCACAAAGGCAAAAT
1 AAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAACAGTCATTTTACCTCATAAGGGCAAAAC
*
86667515 AATCATTTTACCTCAT
66 AGTCATTTTACCTCAT
* * * * *
86667531 AAAGGAAAAATAGTCA-TTTACCACATAAGGGCAAAATAGTCATTTTACCTCACAAGGGCAAAAC
1 AAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAACAGTCATTTTACCTCATAAGGGCAAAAC
*
86667595 AGTTATTTTACCTCAT
66 AGTCATTTTACCTCAT
* * *
86667611 AAGGGCAAAACAATCATTTTACCACAAAAGGGCAAAACAGTCATTTTACCTCACAAGGGCAAAAC
1 AAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAACAGTCATTTTACCTCATAAGGGCAAAAC
*
86667676 AGTTATTTTACCTCAT
66 AGTCATTTTACCTCAT
*
86667692 AAGGGCAAAACAATCATTTTA
1 AAGGGCAAAACAGTCATTTTA
86667713 TTAATTTGGG
Statistics
Matches: 373, Mismatches: 51, Indels: 2
0.88 0.12 0.00
Matches are distributed among these distances:
80 70 0.19
81 303 0.81
ACGTcount: A:0.42, C:0.20, G:0.13, T:0.25
Consensus pattern (81 bp):
AAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAACAGTCATTTTACCTCATAAGGGCAAAAC
AGTCATTTTACCTCAT
Found at i:86685893 original size:68 final size:68
Alignment explanation
Indices: 86685743--86685900 Score: 169
Period size: 68 Copynumber: 2.3 Consensus size: 68
86685733 CTAGCCAGTT
* * *
86685743 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACA
**
86685808 TTTA
65 CATA
* * *
86685812 TCTCTCCCGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTA
1 TATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTA
86685874 CTACATA
63 C-ACATA
86685881 GTATCTCGTAGCTCTCTTGT
1 -TATCTCGTAGCTCTCTTGT
86685901 AAAGTATAAT
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
68 36 0.48
69 7 0.09
70 6 0.08
71 26 0.35
ACGTcount: A:0.21, C:0.29, G:0.16, T:0.34
Consensus pattern (68 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACAC
ATA
Found at i:86687118 original size:44 final size:43
Alignment explanation
Indices: 86687008--86687118 Score: 127
Period size: 44 Copynumber: 2.5 Consensus size: 43
86686998 ATAAACTCAC
86687008 ACACTTAGTGCCAATTAATTAG-CCGAAGCTATAATAGTATCGT
1 ACACTTAGTGCC-ATTAATTAGACCGAAGCTATAATAGTATCGT
* **
86687051 ACACTTAGTGCCATTACAATAGACCGAATTTAT-ATCAGTATCGT
1 ACACTTAGTGCCATTA-ATTAGACCGAAGCTATAAT-AGTATCGT
* *
86687095 ACACATAGTGCCATTTATTTAGAC
1 ACACTTAGTGCCA-TTAATTAGAC
86687119 AACATTGTTT
Statistics
Matches: 58, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
42 4 0.07
43 18 0.31
44 33 0.57
45 3 0.05
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.32
Consensus pattern (43 bp):
ACACTTAGTGCCATTAATTAGACCGAAGCTATAATAGTATCGT
Found at i:86701270 original size:4 final size:4
Alignment explanation
Indices: 86701261--86701293 Score: 57
Period size: 4 Copynumber: 8.2 Consensus size: 4
86701251 AAACTTCTTC
*
86701261 ACTT ACTT ACTT ACTT AATT ACTT ACTT ACTT A
1 ACTT ACTT ACTT ACTT ACTT ACTT ACTT ACTT A
86701294 ACCAAATTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.00, T:0.48
Consensus pattern (4 bp):
ACTT
Found at i:86701282 original size:16 final size:16
Alignment explanation
Indices: 86701263--86701294 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
86701253 ACTTCTTCAC
86701263 TTACTTACTTACTTAA
1 TTACTTACTTACTTAA
86701279 TTACTTACTTACTTAA
1 TTACTTACTTACTTAA
86701295 CCAAATTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.19, G:0.00, T:0.50
Consensus pattern (16 bp):
TTACTTACTTACTTAA
Found at i:86701684 original size:108 final size:110
Alignment explanation
Indices: 86701533--86701730 Score: 283
Period size: 108 Copynumber: 1.8 Consensus size: 110
86701523 ATCCTTTTGA
* * * *
86701533 AACTTACCATTGCCATGTGTCGACATGGTCTTACATCGCATCCTTGCCTTATGAA-CTCACCAAT
1 AACTTACCAATGCCATGTCTCGACATAGTCTTACATCGCATCCTTGCCTTATAAACCTCACCAAT
*
86701597 -GCCATGCCTTGGCATGGTCTTACACGGGACATTTGCCTTATAGT
66 AACCATGCCTTGGCATGGTCTTACACGGGACATTTGCCTTATAGT
* * * * * *
86701641 AACTTATCAATGCCATGTCTTGACATAGTTTTACATGGTATCCTTGCCTTATAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTCGACATAGTCTTACATCGCATCCTTGCCTTATAAACCTCACCAAT
86701706 AACCATGCCTTGGCATGGTCTTACA
66 AACCATGCCTTGGCATGGTCTTACA
86701731 TGGTATCCTT
Statistics
Matches: 77, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
108 46 0.60
109 8 0.10
110 23 0.30
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.33
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTCGACATAGTCTTACATCGCATCCTTGCCTTATAAACCTCACCAAT
AACCATGCCTTGGCATGGTCTTACACGGGACATTTGCCTTATAGT
Found at i:86701688 original size:55 final size:54
Alignment explanation
Indices: 86701486--86701740 Score: 220
Period size: 55 Copynumber: 4.8 Consensus size: 54
86701476 ACACGGGTAC
* * * * *
86701486 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCCTT---TT-GA-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA
* ** * * *
86701535 CTTACCATTGCCATGTGTCGACATGGTCTTACATCGCATCCTTGCCTTAT-GAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA
* * * * *
86701588 CTCACCAATGCCATGCCTTGGCATGGTCTTACACGGGA-CATTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATC-CTTGCCTTATAG-AA
* * * *
86701643 CTTATCAATGCCATGTCTTGACATAGTTTTACATGGTATCCTTGCCTTATA-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA
* *
86701696 CCTTACCAATAACCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAAT-GCCATGCCTTGACATGGTCTTACATGGTATCCTT
86701741 AAACCCTAAT
Statistics
Matches: 162, Mismatches: 33, Indels: 16
0.77 0.16 0.08
Matches are distributed among these distances:
49 36 0.22
52 3 0.02
53 42 0.26
54 9 0.06
55 71 0.44
56 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA
Found at i:86717654 original size:43 final size:43
Alignment explanation
Indices: 86717488--86717656 Score: 177
Period size: 43 Copynumber: 4.0 Consensus size: 43
86717478 ATATCGTACA
* * *
86717488 ATGCCAACGTCCCAGACGTGGTCTTACATGGTATCTCATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACATGGAATCACATATCG
* * * *
86717531 ATGCCACTATCCCAGACAG-GGTCTTACA-CGAATCAAATAT-G
1 ATGCCAATGTCCCAGAC-GTGGTCTTACATGGAATCACATATCG
* * * *
86717572 ATGCCGATGTCCCAGACAT-GTCCTTACACGTAATCACATATCG
1 ATGCCAATGTCCCAGACGTGGT-CTTACATGGAATCACATATCG
86717615 ATGCCAATGTCCCAGACGTGGTCTTACATGAGAAT-ACATATC
1 ATGCCAATGTCCCAGACGTGGTCTTACATG-GAATCACATATC
86717657 AGAAACCCTA
Statistics
Matches: 101, Mismatches: 18, Indels: 14
0.76 0.14 0.11
Matches are distributed among these distances:
40 2 0.02
41 21 0.21
42 17 0.17
43 55 0.54
44 6 0.06
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACATGGAATCACATATCG
Found at i:86722086 original size:120 final size:120
Alignment explanation
Indices: 86721868--86722844 Score: 1706
Period size: 120 Copynumber: 8.0 Consensus size: 120
86721858 CGGATGATAA
* * *
86721868 CCGGACTAAGATCC-GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
1 CCGGTCTAAG-TCCAGAAGGCATTTGTGCGAGTTACTATATCCGGTCTAAGTCCAGAAGGCATTT
86721932 GTGCGAGTTACTATATCCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
65 GTGCGAGTTACTATATCCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
86721988 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATATCCGGTCTAAGTCCAGAAGGCATTTG
1 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATATCCGGTCTAAGTCCAGAAGGCATTTG
86722053 TGCGAGTTACTATATCCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
66 TGCGAGTTACTATATCCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
86722108 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATATCCGGTCTAAGTCCAGAAGGCATTTG
1 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATATCCGGTCTAAGTCCAGAAGGCATTTG
86722173 TGCGAGTTACTATATCCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
66 TGCGAGTTACTATATCCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
86722228 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATATCCGGTCTAAGTCCAGAAGGCATTTG
1 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATATCCGGTCTAAGTCCAGAAGGCATTTG
86722293 TGCGAGTTACTATATCCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
66 TGCGAGTTACTATATCCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
86722348 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATATCCGGTCTAAGTCCAGAAGGCATTTG
1 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATATCCGGTCTAAGTCCAGAAGGCATTTG
86722413 TGCGAGTTACTATATCCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
66 TGCGAGTTACTATATCCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
86722468 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATATCCGGTCTAAGTCCAGAAGGCATTTG
1 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATATCCGGTCTAAGTCCAGAAGGCATTTG
86722533 TGCGAGTTACTATATCCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
66 TGCGAGTTACTATATCCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
* *
86722588 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGTCTAAGTCCAGAAGGCATTTG
1 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATATCCGGTCTAAGTCCAGAAGGCATTTG
*
86722653 TGCGAGTTACTATATCCGGGCTAAGTTCC-GAAGGCATTTGTGCGAGTTACTATATTCGGGCTCT
66 TGCGAGTTACTATATCCGGTCTAAG-TCCAGAAGGCATTTGTGCGAG----T-TA--------CT
86722717 ATAT
117 ATAT
*
86722721 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATATCCGGTCTAAGTCCCGAAGGCATTTG
1 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATATCCGGTCTAAGTCCAGAAGGCATTTG
* * * *
86722786 TGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTGCTATAT
66 TGCGAGTTACTATATCCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
86722841 CCGG
1 CCGG
86722845 ATAAATCCCG
Statistics
Matches: 830, Mismatches: 11, Indels: 32
0.95 0.01 0.04
Matches are distributed among these distances:
119 3 0.00
120 707 0.85
121 3 0.00
124 1 0.00
125 2 0.00
128 1 0.00
129 1 0.00
132 3 0.00
133 109 0.13
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (120 bp):
CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATATCCGGTCTAAGTCCAGAAGGCATTTG
TGCGAGTTACTATATCCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
Found at i:86722714 original size:40 final size:40
Alignment explanation
Indices: 86721868--86722707 Score: 1594
Period size: 40 Copynumber: 21.0 Consensus size: 40
86721858 CGGATGATAA
*
86721868 CCGGACTAAGATCC-GAAGGCATTTGTGCGAGTTACTATAT
1 CCGGTCTAAG-TCCAGAAGGCATTTGTGCGAGTTACTATAT
* *
86721908 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
86721948 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
86721988 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
86722028 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
86722068 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
86722108 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
86722148 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
86722188 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
86722228 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
86722268 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
86722308 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
86722348 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
86722388 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
86722428 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
86722468 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
86722508 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
86722548 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
* *
86722588 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
86722628 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
*
86722668 CCGGGCTAAGTTCC-GAAGGCATTTGTGCGAGTTACTATAT
1 CCGGTCTAAG-TCCAGAAGGCATTTGTGCGAGTTACTATAT
86722708 TCGGGCTCTA
Statistics
Matches: 790, Mismatches: 8, Indels: 4
0.99 0.01 0.00
Matches are distributed among these distances:
39 3 0.00
40 784 0.99
41 3 0.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (40 bp):
CCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
Found at i:86722770 original size:40 final size:40
Alignment explanation
Indices: 86722715--86722858 Score: 227
Period size: 40 Copynumber: 3.6 Consensus size: 40
86722705 TATTCGGGCT
*
86722715 CTATATCCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTA
1 CTATATCCGGTCTAAGTCCCGAAGGCATTTGTGCGAGTTA
86722755 CTATATCCGGTCTAAGTCCCGAAGGCATTTGTGCGAGTTA
1 CTATATCCGGTCTAAGTCCCGAAGGCATTTGTGCGAGTTA
* * *
86722795 CTATATCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTG
1 CTATATCCGGTCTAAGTCCCGAAGGCATTTGTGCGAGTTA
* *
86722835 CTATATCCGG-ATAAATCCCGAAGG
1 CTATATCCGGTCTAAGTCCCGAAGG
86722859 TACTTGGGTT
Statistics
Matches: 98, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 12 0.12
40 86 0.88
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.28
Consensus pattern (40 bp):
CTATATCCGGTCTAAGTCCCGAAGGCATTTGTGCGAGTTA
Found at i:86722781 original size:93 final size:93
Alignment explanation
Indices: 86722622--86722807 Score: 345
Period size: 93 Copynumber: 2.0 Consensus size: 93
86722612 GTGCGAGTTA
*
86722622 CTATATCCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTTCCGAAGG
1 CTATATCCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGG
*
86722687 CATTTGTGCGAGTTACTATATTCGGGCT
66 CATTTGTGCGAGTTACTATATCCGGGCT
*
86722715 CTATATCCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATATCCGGTCTAAGTCCCGAAGG
1 CTATATCCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGG
86722780 CATTTGTGCGAGTTACTATATCCGGGCT
66 CATTTGTGCGAGTTACTATATCCGGGCT
86722808 AAGTCCCGAA
Statistics
Matches: 90, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 90 1.00
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.31
Consensus pattern (93 bp):
CTATATCCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGG
CATTTGTGCGAGTTACTATATCCGGGCT
Found at i:86722820 original size:133 final size:133
Alignment explanation
Indices: 86722582--86722840 Score: 464
Period size: 133 Copynumber: 1.9 Consensus size: 133
86722572 GTGCGAGTTA
*
86722582 CTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGTCTAAGTCCAGAAGG
1 CTATATCCGGGCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATATCCGGTCTAAGTCCAGAAGG
* *
86722647 CATTTGTGCGAGTTACTATATCCGGGCTAAGTTCCGAAGGCATTTGTGCGAGTTACTATATTCGG
66 CATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATATTCGG
86722712 GCT
131 GCT
* *
86722715 CTATATCCGGTCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATATCCGGTCTAAGTCCCGAAGG
1 CTATATCCGGGCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATATCCGGTCTAAGTCCAGAAGG
*
86722780 CATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTGCTATAT
66 CATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAT
86722841 CCGGATAAAT
Statistics
Matches: 120, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
133 120 1.00
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.30
Consensus pattern (133 bp):
CTATATCCGGGCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATATCCGGTCTAAGTCCAGAAGG
CATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATATTCGG
GCT
Found at i:86724757 original size:40 final size:40
Alignment explanation
Indices: 86724712--86724789 Score: 156
Period size: 40 Copynumber: 1.9 Consensus size: 40
86724702 CTTAGTAAGT
86724712 CTGTAACACATAAACGATGCTTACCAATACAATGCATATG
1 CTGTAACACATAAACGATGCTTACCAATACAATGCATATG
86724752 CTGTAACACATAAACGATGCTTACCAATACAATGCATA
1 CTGTAACACATAAACGATGCTTACCAATACAATGCATA
86724790 AGCTTAAAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.41, C:0.23, G:0.12, T:0.24
Consensus pattern (40 bp):
CTGTAACACATAAACGATGCTTACCAATACAATGCATATG
Found at i:86725048 original size:29 final size:29
Alignment explanation
Indices: 86725002--86725057 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
86724992 AATGGAATAA
*
86725002 TGATGGTCGTCACAATCCCTTTTCATAGT
1 TGATGGTCATCACAATCCCTTTTCATAGT
*
86725031 TGATGGTCATCACCATCCCTTTTCATA
1 TGATGGTCATCACAATCCCTTTTCATA
86725058 ATCAACAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.21, C:0.27, G:0.14, T:0.38
Consensus pattern (29 bp):
TGATGGTCATCACAATCCCTTTTCATAGT
Found at i:86725077 original size:29 final size:29
Alignment explanation
Indices: 86725045--86725144 Score: 94
Period size: 29 Copynumber: 3.4 Consensus size: 29
86725035 GGTCATCACC
*
86725045 ATCCCTTTTCATAATCAACAGCCGAAGCT
1 ATCCCTTTTCATAATCAATAGCCGAAGCT
* * * * * * *
86725074 ATCCCTTTTCGTATTTAATGGTCGTCA-CC
1 ATCCCTTTTCATAATCAATAGCCG-AAGCT
*
86725103 ATCCCTTTTTCATAATCGATAGCCGAAGCT
1 ATCCC-TTTTCATAATCAATAGCCGAAGCT
86725133 ATCCCTTTTCAT
1 ATCCCTTTTCAT
86725145 TGGTCGATGA
Statistics
Matches: 52, Mismatches: 16, Indels: 6
0.70 0.22 0.08
Matches are distributed among these distances:
29 32 0.62
30 20 0.38
ACGTcount: A:0.24, C:0.29, G:0.11, T:0.36
Consensus pattern (29 bp):
ATCCCTTTTCATAATCAATAGCCGAAGCT
Done.