Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 284 of 313
Found at i:86725095 original size:58 final size:59
Alignment explanation
Indices: 86725016--86725144 Score: 197
Period size: 59 Copynumber: 2.2 Consensus size: 59
86725006 GGTCGTCACA
*
86725016 ATCCCTTTTCATAGTTGATGGTCATCACCATCCC-TTTTCATAATCAACAGCCGAAGCT
1 ATCCCTTTTCATAGTTAATGGTCATCACCATCCCTTTTTCATAATCAACAGCCGAAGCT
* * * * *
86725074 ATCCCTTTTCGTATTTAATGGTCGTCACCATCCCTTTTTCATAATCGATAGCCGAAGCT
1 ATCCCTTTTCATAGTTAATGGTCATCACCATCCCTTTTTCATAATCAACAGCCGAAGCT
86725133 ATCCCTTTTCAT
1 ATCCCTTTTCAT
86725145 TGGTCGATGA
Statistics
Matches: 63, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
58 30 0.48
59 33 0.52
ACGTcount: A:0.23, C:0.29, G:0.12, T:0.36
Consensus pattern (59 bp):
ATCCCTTTTCATAGTTAATGGTCATCACCATCCCTTTTTCATAATCAACAGCCGAAGCT
Found at i:86727761 original size:21 final size:21
Alignment explanation
Indices: 86727735--86727774 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
86727725 GGTGAAAATT
*
86727735 GTAACCCCATGTCGCAACACC
1 GTAACCCCATCTCGCAACACC
*
86727756 GTAACCCCATCTCGTAACA
1 GTAACCCCATCTCGCAACA
86727775 TCAAGGGAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.40, G:0.12, T:0.17
Consensus pattern (21 bp):
GTAACCCCATCTCGCAACACC
Found at i:86730469 original size:27 final size:27
Alignment explanation
Indices: 86730433--86730507 Score: 71
Period size: 27 Copynumber: 2.8 Consensus size: 27
86730423 CAGTGACGGT
* *
86730433 AATATAATCGGCACACAGCCATGC-GTA
1 AATATGATCGGCACACAGCCAT-CAATA
* * *
86730460 AATATGATCGACACAGAGTCATCAATA
1 AATATGATCGGCACACAGCCATCAATA
* *
86730487 AATATGATAGGCACATAGCCA
1 AATATGATCGGCACACAGCCA
86730508 CAGGTAAATA
Statistics
Matches: 38, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
26 1 0.03
27 37 0.97
ACGTcount: A:0.41, C:0.21, G:0.17, T:0.20
Consensus pattern (27 bp):
AATATGATCGGCACACAGCCATCAATA
Found at i:86732421 original size:34 final size:32
Alignment explanation
Indices: 86732353--86732421 Score: 93
Period size: 34 Copynumber: 2.1 Consensus size: 32
86732343 GCTAGTGACT
**
86732353 AGTTCCGGGCAAGTCCCGAAGGCATTTGTGCG
1 AGTTCCGGGCAAGTCCCGAAGGCATTTGAACG
*
86732385 AGTTACCGGGCTATGTCCCGAAGGCATTTGAACG
1 AGTT-CCGGGC-AAGTCCCGAAGGCATTTGAACG
86732419 AGT
1 AGT
86732422 AGCTATATCC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
32 4 0.12
33 6 0.19
34 22 0.69
ACGTcount: A:0.22, C:0.23, G:0.32, T:0.23
Consensus pattern (32 bp):
AGTTCCGGGCAAGTCCCGAAGGCATTTGAACG
Found at i:86738799 original size:40 final size:40
Alignment explanation
Indices: 86738744--86738881 Score: 199
Period size: 40 Copynumber: 3.5 Consensus size: 40
86738734 TGGATGATAA
*
86738744 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
*
86738784 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
86738824 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
* *
86738864 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
86738882 TACTTGGCTT
Statistics
Matches: 90, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
39 15 0.17
40 75 0.83
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:86740287 original size:22 final size:22
Alignment explanation
Indices: 86740259--86740310 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
86740249 ATTGGCACAA
86740259 AGCCATAATCAAGATAGCATAG
1 AGCCATAATCAAGATAGCATAG
* * * * *
86740281 AGCCATATTTAGGCTGGCATAG
1 AGCCATAATCAAGATAGCATAG
86740303 AGCCATAA
1 AGCCATAA
86740311 ACAGATTAAG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.21
Consensus pattern (22 bp):
AGCCATAATCAAGATAGCATAG
Found at i:86745989 original size:23 final size:23
Alignment explanation
Indices: 86745959--86746034 Score: 86
Period size: 23 Copynumber: 3.3 Consensus size: 23
86745949 TAGGTCATTG
86745959 GAGCTTACCATTTCAGCTCG-TA
1 GAGCTTACCATTTCAGCTCGATA
*
86745981 TGAGCTTA-C-TGTTCAACTCGATA
1 -GAGCTTACCAT-TTCAGCTCGATA
* *
86746004 GAGCCTACCATTTCAGCTCAATA
1 GAGCTTACCATTTCAGCTCGATA
86746027 GAGCTTAC
1 GAGCTTAC
86746035 TGTTTATCAG
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
21 1 0.02
22 15 0.34
23 27 0.61
24 1 0.02
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (23 bp):
GAGCTTACCATTTCAGCTCGATA
Found at i:86748258 original size:28 final size:28
Alignment explanation
Indices: 86748218--86748309 Score: 157
Period size: 28 Copynumber: 3.3 Consensus size: 28
86748208 ATGGGAGTAG
*
86748218 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATGTGAATGTGA
86748246 TTGGGCCTGATGGGCCATGTGAATGTGA
1 TTGGGCCTGATGGGCCATGTGAATGTGA
* *
86748274 TTGGGCCTGATGGGCCATGTGAACGAGA
1 TTGGGCCTGATGGGCCATGTGAATGTGA
86748302 TTGGGCCT
1 TTGGGCCT
86748310 AAAGGGGCCA
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 61 1.00
ACGTcount: A:0.18, C:0.16, G:0.38, T:0.27
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATGTGAATGTGA
Found at i:86748656 original size:27 final size:27
Alignment explanation
Indices: 86748626--86748884 Score: 256
Period size: 27 Copynumber: 9.7 Consensus size: 27
86748616 TAATAAAGAG
*
86748626 AAATTACCAAAATACCCCCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
86748653 AAATTACCGAAGTACCC-CCAGTTTGT-
1 AAATTACCAAAATACCCTCGA-TTTGTA
* *
86748679 AAATTATCGAAAA-ACCCTCAATTTGTA
1 AAATTA-CCAAAATACCCTCGATTTGTA
*
86748706 AAATTACCAAAATACCCTCGA-TTGTG
1 AAATTACCAAAATACCCTCGATTTGTA
*
86748732 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * * *
86748759 AAATTATCAAAATACCCCCAATTTCTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
86748786 AAATTACCAAAATACCTTCAATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * * * *
86748813 AAATTATCGAAATGCCTTTGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
86748840 AAATTACCGAAACACCCCCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
86748867 AAATTATCGAAATACCCT
1 AAATTACCAAAATACCCT
86748885 TGTAGTGTAA
Statistics
Matches: 191, Mismatches: 35, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
26 46 0.24
27 145 0.76
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:86748857 original size:81 final size:80
Alignment explanation
Indices: 86748626--86748884 Score: 265
Period size: 80 Copynumber: 3.2 Consensus size: 80
86748616 TAATAAAGAG
* * ** * *
86748626 AAATTACCAAAATACCCCCGATTTGTAAAATTACCGAAGTACCC-CCAGTTTGT-AAATTATCGA
1 AAATTACCAAAATACCCTC-AATTGTAAAATTACTAAAATACCCTCGA-TTTGTAAAATTATCGA
*
86748689 AAAACCCTCAATTTGTA
64 AAAACCCCCAATTTGTA
* *
86748706 AAATTACCAAAATACCCTCGATTGTGAAATTACTAAAATACCCTCGATTTGTAAAATTATC-AAA
1 AAATTACCAAAATACCCTCAATTGTAAAATTACTAAAATACCCTCGATTTGTAAAATTATCGAAA
*
86748770 ATACCCCCAATTTCTA
66 A-ACCCCCAATTTGTA
* * * * * *
86748786 AAATTACCAAAATACCTTCAATTTGTAAAATTA-TCGAAATGCCTTTGATTTGTAAAATTACCGA
1 AAATTACCAAAATACCCTCAA-TTGTAAAATTACT-AAAATACCCTCGATTTGTAAAATTATCGA
* *
86748850 AACACCCCCGATTTGTA
64 AAAACCCCCAATTTGTA
* *
86748867 AAATTATCGAAATACCCT
1 AAATTACCAAAATACCCT
86748885 TGTAGTGTAA
Statistics
Matches: 149, Mismatches: 24, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
79 27 0.18
80 60 0.40
81 59 0.40
82 3 0.02
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (80 bp):
AAATTACCAAAATACCCTCAATTGTAAAATTACTAAAATACCCTCGATTTGTAAAATTATCGAAA
AACCCCCAATTTGTA
Found at i:86752769 original size:40 final size:40
Alignment explanation
Indices: 86752700--86752876 Score: 286
Period size: 40 Copynumber: 4.5 Consensus size: 40
86752690 AAGTATCTTT
* *
86752700 GGGATTTAG-CCGGATATAG-CAACTCGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTC
*
86752739 GGGTCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
*
86752779 GGGACTTAGCCCGGATATAGTTACTAGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
*
86752819 GGGACTTAGCCCGGTTATAGTCACTAGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
86752859 GGGACTTAGCCCGGATAT
1 GGGACTTAGCCCGGATAT
86752877 CATTCGAATA
Statistics
Matches: 128, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 7 0.05
40 120 0.94
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (40 bp):
GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
Found at i:86758923 original size:27 final size:27
Alignment explanation
Indices: 86758883--86759077 Score: 227
Period size: 27 Copynumber: 7.2 Consensus size: 27
86758873 AGGAAGCGTC
*
86758883 CTGGTGGCTATGCCACAAATATCTGAT
1 CTGGTGGCTCTGCCACAAATATCTGAT
*
86758910 CTGGTGGCTCTGCCACATATATCTG-T
1 CTGGTGGCTCTGCCACAAATATCTGAT
* * *
86758936 CCTGATGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAAATATCTGAT
* *
86758964 CTGGTGGCTCTTCCACATATATCTG-T
1 CTGGTGGCTCTGCCACAAATATCTGAT
* *
86758990 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAAATATCTGAT
*
86759018 CTGGTGGCTCTGCCACATATATCTG-T
1 CTGGTGGCTCTGCCACAAATATCTGAT
*
86759044 CCTGGTGGCTCTACCAC-AATATCTGTAT
1 -CTGGTGGCTCTGCCACAAATATCTG-AT
86759072 CTGGTG
1 CTGGTG
86759078 ACTTCGTCAC
Statistics
Matches: 141, Mismatches: 20, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
26 10 0.07
27 128 0.91
28 3 0.02
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.33
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAAATATCTGAT
Found at i:86758962 original size:54 final size:54
Alignment explanation
Indices: 86758880--86759077 Score: 335
Period size: 54 Copynumber: 3.7 Consensus size: 54
86758870 TGGAGGAAGC
*
86758880 GTCCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* *
86758934 GTCCTGATGGCTATGCCACAATTATCTGATCTGGTGGCTCTTCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
86758988 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* *
86759042 GTCCTGGTGGCTCTACCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
86759078 ACTTCGTCAC
Statistics
Matches: 136, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
53 6 0.04
54 130 0.96
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.33
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:86762029 original size:41 final size:42
Alignment explanation
Indices: 86761970--86762083 Score: 140
Period size: 41 Copynumber: 2.7 Consensus size: 42
86761960 GTATATGTTA
** * *
86761970 TCATGTAAGACCATATCTGGGATATGGTGTTGATATGAGATT
1 TCATGTAAGACCATATCTGGGATATGGCATCGAAATGAGATT
* *
86762012 TCATGT-AGACCACATCTGGGACATGGCATCGAAATGAGATT
1 TCATGTAAGACCATATCTGGGATATGGCATCGAAATGAGATT
* * *
86762053 TCGTATAAGACCATATCTGAGATATGGCATC
1 TCATGTAAGACCATATCTGGGATATGGCATC
86762084 AATGTGAAAT
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
41 33 0.55
42 27 0.45
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.30
Consensus pattern (42 bp):
TCATGTAAGACCATATCTGGGATATGGCATCGAAATGAGATT
Found at i:86762122 original size:42 final size:42
Alignment explanation
Indices: 86762018--86762124 Score: 117
Period size: 42 Copynumber: 2.5 Consensus size: 42
86762008 GATTTCATGT
* **
86762018 AGACCACATCTGGGACATGGCATCGAAATGAGATTTCGTATA
1 AGACCACATCTGGGACATGGCATCGAAATGAAATCCCGTATA
* * * * *
86762060 AGACCATATCTGAGATATGGCATC-AATGTGAAATCCCGTGTA
1 AGACCACATCTGGGACATGGCATCGAA-ATGAAATCCCGTATA
*
86762102 AGACCACGTCTGGGACATGGCAT
1 AGACCACATCTGGGACATGGCAT
86762125 TGGCATCGTA
Statistics
Matches: 52, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
41 2 0.04
42 50 0.96
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.23
Consensus pattern (42 bp):
AGACCACATCTGGGACATGGCATCGAAATGAAATCCCGTATA
Found at i:86764520 original size:43 final size:41
Alignment explanation
Indices: 86764411--86764573 Score: 132
Period size: 43 Copynumber: 3.9 Consensus size: 41
86764401 AGCTCGTACA
* * ** *
86764411 ATGCC-ATATCCCAGATATGGT-TTACATGTTATCACATATTG
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCA-ATA-CG
* *** *
86764452 ATGCCACTGTCCCAGACAAAATCTTACATGAAATCGATTAACG
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATC-AAT-ACG
* *
86764495 ATGCCAATGTCCCAGACATGGTCTTACACGTAATATCAATACA
1 ATGCCAATGTCCCAGACATGGTCTTACATG-AA-ATCAATACG
* *
86764538 ATGCCAATGCCCCAGACATGGTCTTACATGTAATCA
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCA
86764574 CATCTCGATA
Statistics
Matches: 96, Mismatches: 20, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
41 9 0.09
42 11 0.11
43 67 0.70
44 6 0.06
45 3 0.03
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.28
Consensus pattern (41 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGAAATCAATACG
Found at i:86769063 original size:47 final size:47
Alignment explanation
Indices: 86768893--86769043 Score: 230
Period size: 47 Copynumber: 3.2 Consensus size: 47
86768883 TTAGGATTTT
** * * **
86768893 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCTGAATGGGAA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCAGAATGGCCA
*
86768940 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCAGAATGGCCA
*
86768987 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCAGAATGGCCA
86769034 ATGTGATGAA
1 ATGTGATGAA
86769044 CGTGGAAGTG
Statistics
Matches: 96, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 96 1.00
ACGTcount: A:0.36, C:0.08, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCAGAATGGCCA
Found at i:86769077 original size:47 final size:47
Alignment explanation
Indices: 86768893--86769083 Score: 188
Period size: 47 Copynumber: 4.1 Consensus size: 47
86768883 TTAGGATTTT
** * * ** **
86768893 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCTGAATGGGAA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAAGCCAAATGGCCA
* *
86768940 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAAGCCAAATGGCCA
* *
86768987 ATGTGATGAATGTGAACATGCATATATGTGAT-AAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAAGCCA-AATGGCCA
* * * * * *
86769034 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCAAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGAGATAAAGCCAAATGGCCA
86769081 ATG
1 ATG
86769084 CGAAACGTGT
Statistics
Matches: 125, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
46 3 0.02
47 114 0.91
48 8 0.06
ACGTcount: A:0.36, C:0.08, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAAGCCAAATGGCCA
Found at i:86769077 original size:94 final size:94
Alignment explanation
Indices: 86768893--86769083 Score: 231
Period size: 94 Copynumber: 2.0 Consensus size: 94
86768883 TTAGGATTTT
** * * * *
86768893 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCTGAATGGGAAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCAGAATGGCAAATGTGATGAACGTGAACA
* *
86768958 TGCATATATGAGATAAGGCCGAATGGCCA
66 TGCATATATGAGATAAAGCCAAATGGCCA
* *
86768987 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAACGTGGAA-
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCAGAATGGCAAATGTGATGAACGT-GAAC
* * * * *
86769051 GTGTATATATGTGGTAAAGCCAAATGGCTA
65 ATGCATATATGAGATAAAGCCAAATGGCCA
86769081 ATG
1 ATG
86769084 CGAAACGTGT
Statistics
Matches: 81, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
94 78 0.96
95 3 0.04
ACGTcount: A:0.36, C:0.08, G:0.29, T:0.27
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCAGAATGGCAAATGTGATGAACGTGAACA
TGCATATATGAGATAAAGCCAAATGGCCA
Found at i:86769113 original size:46 final size:46
Alignment explanation
Indices: 86769057--86769239 Score: 258
Period size: 46 Copynumber: 4.0 Consensus size: 46
86769047 GGAAGTGTAT
* *
86769057 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACGTGTATGAGATAG
1 ATATGAGGTAAAGCCAAATGGCTAATGCGAAACGTGTATGAGATGG
* * *
86769103 ATATGAGGTAAAGCCGAATGGCTAATGCGAAAAGTGTATGAGGTGG
1 ATATGAGGTAAAGCCAAATGGCTAATGCGAAACGTGTATGAGATGG
* *
86769149 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGGGATGG
1 ATATGAGGTAAAGCCAAATGGCTAATGCGAAACGTGTATGAGATGG
* * * **
86769195 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGAGGTAAAGCCAAATGGCTAATGCGAAACGTGTATGAGATG
86769240 TGTATATATA
Statistics
Matches: 122, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 122 1.00
ACGTcount: A:0.35, C:0.09, G:0.32, T:0.24
Consensus pattern (46 bp):
ATATGAGGTAAAGCCAAATGGCTAATGCGAAACGTGTATGAGATGG
Found at i:86774382 original size:6 final size:6
Alignment explanation
Indices: 86774364--86774469 Score: 110
Period size: 6 Copynumber: 17.3 Consensus size: 6
86774354 AAGAAACATT
86774364 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * *
86774412 ATTAG- GTGACAGA ATCAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA
1 ATCAGA AT--CAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
86774462 ATCAGA AT
1 ATCAGA AT
86774470 GGGAATGCAA
Statistics
Matches: 84, Mismatches: 8, Indels: 16
0.78 0.07 0.15
Matches are distributed among these distances:
5 4 0.05
6 72 0.86
7 6 0.07
8 2 0.02
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:86774428 original size:31 final size:31
Alignment explanation
Indices: 86774364--86774469 Score: 137
Period size: 31 Copynumber: 3.5 Consensus size: 31
86774354 AAGAAACATT
86774364 ATCAGAA-CTAGAATCAGAATCA-G-AATCAGA
1 ATCAGAATC-AGAATCAGAATCAGGTAA-CAGA
* *
86774394 ATCAGAATCAGAATCAGAATTAGGTGACAGA
1 ATCAGAATCAGAATCAGAATCAGGTAACAGA
*
86774425 ATCAGAATCAGAATCAGTATCAGGTAACAGA
1 ATCAGAATCAGAATCAGAATCAGGTAACAGA
*
86774456 ATCAAAATCAGAAT
1 ATCAGAATCAGAAT
86774470 GGGAATGCAA
Statistics
Matches: 67, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
30 19 0.28
31 47 0.70
32 1 0.01
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (31 bp):
ATCAGAATCAGAATCAGAATCAGGTAACAGA
Found at i:86775642 original size:27 final size:26
Alignment explanation
Indices: 86775612--86775672 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 26
86775602 TTAGTTTACC
* *
86775612 AAATTACAGAAATGCCCTCGACTTGTA
1 AAATTACA-AAATACCCTCGACTTATA
* *
86775639 AAATTACCAAAGTACCCTCGATTTATA
1 AAATTA-CAAAATACCCTCGACTTATA
86775666 AAATTAC
1 AAATTAC
86775673 TATTTTACCC
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
26 1 0.03
27 26 0.90
28 2 0.07
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.28
Consensus pattern (26 bp):
AAATTACAAAATACCCTCGACTTATA
Found at i:86775681 original size:27 final size:27
Alignment explanation
Indices: 86775651--86775742 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
86775641 ATTACCAAAG
* *
86775651 TACCCTCGATTTATAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
** *
86775678 TACCCTTAATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
86775705 TACCCTTGATTTACAAAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTACT-GTTT
86775732 TACCCTCGATT
1 TACCCTCGATT
86775743 GTGAAATTAC
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
26 1 0.02
27 55 0.98
ACGTcount: A:0.29, C:0.21, G:0.07, T:0.43
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Found at i:86775815 original size:54 final size:54
Alignment explanation
Indices: 86775741--86775924 Score: 185
Period size: 54 Copynumber: 3.4 Consensus size: 54
86775731 TTACCCTCGA
* ** *
86775741 TTGTGAAATTACTGAAATACCCCTAGTTTGTAAAATTATCAAAATACCCCT-AGT
1 TTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTATCAAAATACCCCTGA-T
* *
86775795 TTGTAAAATTACCAAAATACCCCTAATTTGTGAAATTACCAAAATACCCCTGAT
1 TTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTATCAAAATACCCCTGAT
* ** ** ** *
86775849 TTGTGAAATTACTGAAATA-CCCTCAACCTGTAAAATTATTGAAATA-CCCTCGAC
1 TTGTAAAATTACCAAAATACCCCT-AATTTGTAAAATTATCAAAATACCCCT-GAT
*
86775903 TTGTAAAATTACCAAAGTACCC
1 TTGTAAAATTACCAAAATACCC
86775925 TTGATTTACA
Statistics
Matches: 106, Mismatches: 20, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
53 8 0.08
54 95 0.90
55 3 0.03
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (54 bp):
TTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTATCAAAATACCCCTGAT
Found at i:86775925 original size:27 final size:26
Alignment explanation
Indices: 86775741--86775924 Score: 143
Period size: 27 Copynumber: 6.8 Consensus size: 26
86775731 TTACCCTCGA
* ** *
86775741 TTGTGAAATTACTGAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCC-AAT
* *
86775768 TTGTAAAATTATCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCC-AAT
86775795 TTGTAAAATTACCAAAATACCCCTAAT
1 TTGTAAAATTACCAAAATACCCC-AAT
* *
86775822 TTGTGAAATTACCAAAATACCCCTGAT
1 TTGTAAAATTACCAAAATACCCC-AAT
* ** *
86775849 TTGTGAAATTACTGAAATACCCTCAAC
1 TTGTAAAATTACCAAAATACCC-CAAT
* *** * *
86775876 CTGTAAAATTATTGAAATACCCTCGAC
1 TTGTAAAATTACCAAAATACCC-CAAT
*
86775903 TTGTAAAATTACCAAAGTACCC
1 TTGTAAAATTACCAAAATACCC
86775925 TTGATTTACA
Statistics
Matches: 135, Mismatches: 21, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
27 134 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (26 bp):
TTGTAAAATTACCAAAATACCCCAAT
Found at i:86775939 original size:27 final size:26
Alignment explanation
Indices: 86775907--86775981 Score: 78
Period size: 27 Copynumber: 2.8 Consensus size: 26
86775897 CTCGACTTGT
86775907 AAAATTACCAAAGTACCCTTGATTTAC
1 AAAATTACCAAA-TACCCTTGATTTAC
* * **
86775934 AGAATTATCATTTTACCCTTGATTTAC
1 AAAATTACCA-AATACCCTTGATTTAC
*
86775961 AAAATTACTGAAATACCCTTG
1 AAAATTAC-CAAATACCCTTG
86775982 TAGGGTAGAA
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
27 36 0.97
28 1 0.03
ACGTcount: A:0.37, C:0.20, G:0.08, T:0.35
Consensus pattern (26 bp):
AAAATTACCAAATACCCTTGATTTAC
Found at i:86775993 original size:27 final size:27
Alignment explanation
Indices: 86775963--86776185 Score: 284
Period size: 27 Copynumber: 8.3 Consensus size: 27
86775953 TGATTTACAA
* *
86775963 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
86775990 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
86776017 AATTACCGAAATACTCCTTTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
86776044 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
86776071 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
86776098 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
86776125 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
86776152 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
86776179 AATTACC
1 AATTACC
86776186 ATTTTGCCCC
Statistics
Matches: 173, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 173 1.00
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:86776619 original size:6 final size:6
Alignment explanation
Indices: 86776592--86776675 Score: 73
Period size: 6 Copynumber: 13.7 Consensus size: 6
86776582 ATTCCCATTT
* * *
86776592 TGATTT TGATTC TG-TTACC TGATAC TGATTC TGATTC TGATTC TG-TCACC
1 TGATTC TGATTC TGATT--C TGATTC TGATTC TGATTC TGATTC TGAT--TC
* *
86776642 TGATTC TGATTC TAATTC TGATTC TAATTC TGAT
1 TGATTC TGATTC TGATTC TGATTC TGATTC TGAT
86776676 AATGTTTCTT
Statistics
Matches: 63, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
5 3 0.05
6 52 0.83
7 6 0.10
8 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (6 bp):
TGATTC
Found at i:86776633 original size:31 final size:31
Alignment explanation
Indices: 86776592--86776666 Score: 114
Period size: 31 Copynumber: 2.4 Consensus size: 31
86776582 ATTCCCATTT
* *
86776592 TGATTTTGATTCTGTTACCTGATACTGATTC
1 TGATTCTGATTCTGTCACCTGATACTGATTC
*
86776623 TGATTCTGATTCTGTCACCTGATTCTGATTC
1 TGATTCTGATTCTGTCACCTGATACTGATTC
*
86776654 TAATTCTGATTCT
1 TGATTCTGATTCT
86776667 AATTCTGATA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.48
Consensus pattern (31 bp):
TGATTCTGATTCTGTCACCTGATACTGATTC
Found at i:86776684 original size:18 final size:17
Alignment explanation
Indices: 86776663--86776696 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
86776653 CTAATTCTGA
86776663 TTCTAATTCTGATAATGT
1 TTCTAATTCTG-TAATGT
*
86776681 TTCTTATTCTGTAATG
1 TTCTAATTCTGTAATG
86776697 GGTTAAAGCC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.53
Consensus pattern (17 bp):
TTCTAATTCTGTAATGT
Found at i:86777612 original size:27 final size:27
Alignment explanation
Indices: 86777582--86777777 Score: 275
Period size: 27 Copynumber: 7.3 Consensus size: 27
86777572 GGGGCAAAAT
* * * *
86777582 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
86777609 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
86777636 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
86777663 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
86777690 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
86777717 AGTATTTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
86777744 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
86777771 GGTAATT
1 GGTAATT
86777778 TTGTAAACCA
Statistics
Matches: 149, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 149 1.00
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:86777682 original size:81 final size:81
Alignment explanation
Indices: 86777586--86777777 Score: 314
Period size: 81 Copynumber: 2.4 Consensus size: 81
86777576 CAAAATGGTA
* *
86777586 ATTT-TACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
*
86777650 ACAGGGGTATTTCGGT
66 ACAGGGGTATTTCAGT
* *
86777666 ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTAGTATTTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
86777731 ACAGGGGTATTTCAGT
66 ACAGGGGTATTTCAGT
* *
86777747 AATTCTACCCTACAGGGGTATTTCGGTAATT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATT
86777778 TTGTAAACCA
Statistics
Matches: 103, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
80 4 0.04
81 99 0.96
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.35
Consensus pattern (81 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
ACAGGGGTATTTCAGT
Found at i:86777792 original size:27 final size:27
Alignment explanation
Indices: 86777762--86778102 Score: 202
Period size: 27 Copynumber: 12.6 Consensus size: 27
86777752 TACCCTACAG
* * *
86777762 GGGTATTTCGGTAATTTTGTAAACCAA
1 GGGTATTTCGGTAATTTTATAAATCGA
* *
86777789 GGGTATTTCAGTAATTTTGTAAATCGA
1 GGGTATTTCGGTAATTTTATAAATCGA
*** * *
86777816 GGGTAAAACGGTAATTCTATAAATCAA
1 GGGTATTTCGGTAATTTTATAAATCGA
* *** * *
86777843 TGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTATTTCGGTAATTTTATAAATCGA
*** *
86777870 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTATTTCGGTAATTTTATAAATCGA
*** * * *
86777897 GGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTATTTCGGTAATTTTATAAATCGA
* *
86777924 GGGTACTTT-GGTAATTTTACAAGTCGA
1 GGGTA-TTTCGGTAATTTTATAAATCGA
* * * **
86777951 GGATATTTCAGTAATTTTACAGGTCGA
1 GGGTATTTCGGTAATTTTATAAATCGA
* * *
86777978 GGGTATTTCAGTAATTTCACAAATC-A
1 GGGTATTTCGGTAATTTTATAAATCGA
* * *
86778004 GAGGTATTTTGGTAATTTTACAAA-CTA
1 G-GGTATTTCGGTAATTTTATAAATCGA
* * * *
86778031 GGGGTATTTTGGTAATTTTACAAACCAA
1 -GGGTATTTCGGTAATTTTATAAATCGA
* * * *
86778059 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTCGGTAATTTTATAAATCGA
*
86778086 GGGTATTTCAGTAATTT
1 GGGTATTTCGGTAATTT
86778103 GGTAAACTAA
Statistics
Matches: 263, Mismatches: 45, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
26 6 0.02
27 254 0.97
28 3 0.01
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.35
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTATAAATCGA
Found at i:86777793 original size:54 final size:52
Alignment explanation
Indices: 86777583--86777804 Score: 225
Period size: 54 Copynumber: 4.1 Consensus size: 52
86777573 GGGCAAAATG
* * * * * *
86777583 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCT-ACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTAACCC-A-A-GGGTATTTCA
*
86777637 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTAACC--CAAGGGTATTTCA
**
86777690 GATAATTCTACCCTACAGGGGTATTTTAGTATTTCT-ACCCTACAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCGGTATTTCTAACCC-A-A-GGGTATTTCA
* *
86777745 GTAATTCTACCCTACAGGGGTATTTCGGTAATTTTGTAAACCAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCGGT-A-TTTCTAACCCAAGGGTATTTCA
86777799 GTAATT
1 GTAATT
86777805 TTGTAAATCG
Statistics
Matches: 143, Mismatches: 14, Indels: 22
0.80 0.08 0.12
Matches are distributed among these distances:
51 1 0.01
52 1 0.01
53 4 0.03
54 121 0.85
55 6 0.04
56 6 0.04
57 4 0.03
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.36
Consensus pattern (52 bp):
GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTAACCCAAGGGTATTTCA
Found at i:86777820 original size:54 final size:54
Alignment explanation
Indices: 86777762--86778102 Score: 229
Period size: 54 Copynumber: 6.3 Consensus size: 54
86777752 TACCCTACAG
* * *
86777762 GGGTATTTCGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTGTAAATCGA
1 GGGTATTTCGGTAATTTTATAAATCAAGGGTATTTCAGTAATTTTATAAATCGA
*** * * *** *
86777816 GGGTAAAACGGTAATTCTATAAATCAATGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTATTTCGGTAATTTTATAAATCAAGGGTATTTCAGTAATTTTATAAATCGA
*** * * *** * *
86777870 GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTATTTCGGTAATTTTATAAATCAAGGGTATTTCAGTAATTTTATAAATCGA
* * * * * **
86777924 GGGTACTTT-GGTAATTTTACAAGTCGAGGATATTTCAGTAATTTTACAGGTCGA
1 GGGTA-TTTCGGTAATTTTATAAATCAAGGGTATTTCAGTAATTTTATAAATCGA
* * * ** * *
86777978 GGGTATTTCAGTAATTTCACAAATC-AGAGGTATTTTGGTAATTTTACAAA-CTA
1 GGGTATTTCGGTAATTTTATAAATCAAG-GGTATTTCAGTAATTTTATAAATCGA
* * * ** * * *
86778031 GGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTGATTTTATAAACCAA
1 -GGGTATTTCGGTAATTTTATAAATCAAGGGTATTTCAGTAATTTTATAAATCGA
*
86778086 GGGTATTTCAGTAATTT
1 GGGTATTTCGGTAATTT
86778103 GGTAAACTAA
Statistics
Matches: 235, Mismatches: 46, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
53 7 0.03
54 224 0.95
55 4 0.02
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.35
Consensus pattern (54 bp):
GGGTATTTCGGTAATTTTATAAATCAAGGGTATTTCAGTAATTTTATAAATCGA
Found at i:86782298 original size:24 final size:26
Alignment explanation
Indices: 86782271--86782319 Score: 75
Period size: 24 Copynumber: 1.9 Consensus size: 26
86782261 AGTTCATGCA
86782271 ATATTAAAGC-ATTTAA-ATACAATT
1 ATATTAAAGCTATTTAACATACAATT
86782295 ATATTAAAGCTTATTTAACATACAA
1 ATATTAAAGC-TATTTAACATACAA
86782320 ACTTACCTCG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 10 0.45
26 6 0.27
27 6 0.27
ACGTcount: A:0.49, C:0.10, G:0.04, T:0.37
Consensus pattern (26 bp):
ATATTAAAGCTATTTAACATACAATT
Found at i:86787227 original size:43 final size:42
Alignment explanation
Indices: 86787071--86787228 Score: 135
Period size: 43 Copynumber: 3.7 Consensus size: 42
86787061 ATGTGATTTT
* * *
86787071 GTGTAAGACCACATCTGGGACGTTGGCGTCGACTTATGTTTTAC
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGA-TTATG-ATTAC
* * * *
86787115 GTGTAAGACCATGTCTGGGAC-TTCAGCATCG-TATCTGATTTC
1 GTGTAAGACCACGTCTGGGACGTT-GGCATCGAT-TATGATTAC
* *
86787157 GTGTAAGACC-CTGTCTGGGACAG-TGGCAACGATGTTTGATTAC
1 GTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGAT-TATGATTAC
*
86787200 ATGTAAGACCACGTCTGGGACGTTGGCAT
1 GTGTAAGACCACGTCTGGGACGTTGGCAT
86787229 TGTATATGTT
Statistics
Matches: 91, Mismatches: 15, Indels: 17
0.74 0.12 0.14
Matches are distributed among these distances:
42 29 0.32
43 37 0.41
44 25 0.27
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCACGTCTGGGACGTTGGCATCGATTATGATTAC
Found at i:86788419 original size:27 final size:26
Alignment explanation
Indices: 86788371--86788429 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
86788361 GCGAAGCTGC
*
86788371 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
86788398 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
86788424 CAGATA
1 CAGATA
86788430 CATATATATG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:86790767 original size:46 final size:46
Alignment explanation
Indices: 86790717--86790892 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
86790707 TGGTTGAGCA
86790717 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
86790763 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
86790808 CATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
86790856 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
86790893 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:86790873 original size:93 final size:93
Alignment explanation
Indices: 86790714--86790885 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
86790704 GGATGGTTGA
* *
86790714 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
86790779 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
86790807 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
86790872 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
86790886 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:86794744 original size:21 final size:21
Alignment explanation
Indices: 86794715--86794761 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
86794705 CAATGGAAGG
* * *
86794715 AAAAGGGAAATGGAATTTAGA
1 AAAATGGAAATCGAATGTAGA
86794736 AAAATGGAAATCGAATGTAGA
1 AAAATGGAAATCGAATGTAGA
86794757 AAAAT
1 AAAAT
86794762 ACTAATAAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.55, C:0.02, G:0.23, T:0.19
Consensus pattern (21 bp):
AAAATGGAAATCGAATGTAGA
Found at i:86804764 original size:94 final size:91
Alignment explanation
Indices: 86804518--86804788 Score: 284
Period size: 94 Copynumber: 2.9 Consensus size: 91
86804508 TCATGGGTAA
* *
86804518 AATGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCTATCATCTTCGAGGCTGATGCCATGT
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TCAT-GT-GAGGCTGATG-CATGT
*
86804583 CCTAGACATGGTCTTACACT-GACACATCTC
62 CCCAGACAT-GTCTTACACTAGACACATCTC
* * * * * *
86804613 -GTGGCTGAT-ACATGTCCCAGACAT-GTCTTATATTGGCTT-ATGTCCTGAGGCTAATGCATGT
1 AAT-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTCATG---TGAGGCTGATGCATGT
*
86804674 CCCAGACATGTCTTACACTAGA-ACTTGTCTC
62 CCCAGACATGTCTTACACTAGACAC--ATCTC
*
86804705 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAGTGTGGCTGATGCATGTCC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TCAT-GTGAGGCTGATGCATGTCC
86804770 CAGACATGTCTTACACTAG
64 CAGACATGTCTTACACTAG
86804789 CTCACACAAA
Statistics
Matches: 146, Mismatches: 17, Indels: 27
0.77 0.09 0.14
Matches are distributed among these distances:
90 12 0.08
91 17 0.12
92 19 0.13
93 27 0.18
94 62 0.42
95 6 0.04
96 2 0.01
97 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (91 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTCATGTGAGGCTGATGCATGTCCCA
GACATGTCTTACACTAGACACATCTC
Found at i:86811352 original size:30 final size:31
Alignment explanation
Indices: 86811272--86811354 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
86811262 TCAGTCTCGA
*
86811272 CATAT-ACTGGGCCAAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
86811302 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
86811333 CATATCACT-GGCTGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
86811355 ACTGTAAGCG
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
30 17 0.34
31 33 0.66
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:86811588 original size:24 final size:24
Alignment explanation
Indices: 86811561--86811644 Score: 82
Period size: 25 Copynumber: 3.4 Consensus size: 24
86811551 CTAGAGGCCT
*
86811561 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTAATAAACTAGGGCAA
*
86811585 AGCCCTTTTTGATAAACTAGGGCAA
1 AGCCC-TTTTAATAAACTAGGGCAA
**
86811610 AGCCCTTTTCGGTAAACTAGGGCATA
1 AGCCCTTTT-AATAAACTAGGGCA-A
86811636 A-CCCTTTTA
1 AGCCCTTTTA
86811645 GCACTTCCTC
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
23 1 0.02
24 14 0.27
25 35 0.67
26 2 0.04
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTAGGGCAA
Found at i:86811608 original size:25 final size:25
Alignment explanation
Indices: 86811574--86811643 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
86811564 CTCTTTTAAT
* *
86811574 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTAGGGCAAAGCCCTTTTCGATA
*
86811599 AACTAGGGCAAAGCCCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTCGATA
86811624 AACTAGGGCATAA-CCCTTTT
1 AACTAGGGCA-AAGCCCTTTT
86811644 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 39 0.95
26 2 0.05
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTCGATA
Found at i:86812124 original size:20 final size:20
Alignment explanation
Indices: 86812099--86812147 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
86812089 TGGGCCTGAA
*
86812099 AGCCCATTGGGCTCGACTCT
1 AGCCCATTGGGCTCGACTCC
*
86812119 AGCCCATTGGGCTCGATTCC
1 AGCCCATTGGGCTCGACTCC
86812139 AGCCCATTG
1 AGCCCATTG
86812148 AGGCCCAACT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.16, C:0.35, G:0.24, T:0.24
Consensus pattern (20 bp):
AGCCCATTGGGCTCGACTCC
Found at i:86812709 original size:54 final size:54
Alignment explanation
Indices: 86812543--86812726 Score: 174
Period size: 54 Copynumber: 3.4 Consensus size: 54
86812533 CATCCTACAA
* * * ** * ** *
86812543 GGGTGTTTTGGTAA-ATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAATTAG
1 GGGTATTTTGGTAATTTC-ACAAACCAGGGGTATTTTGGTAATTCTACAAACTAG
* * *
86812597 GGGTATTTTGGTAATTTCACAAACCAGTGGTATTTTGGTAATTTTACAAACTAT
1 GGGTATTTTGGTAATTTCACAAACCAGGGGTATTTTGGTAATTCTACAAACTAG
* * **
86812651 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTATCCTAC-AG
1 GGGTATTTTGGTAATTTCACAAACCAGGGGTATTTTGGTAATTCTA-CAAACTAG
**
86812705 GGGTATTTCAGTAATTTCACAA
1 GGGTATTTTGGTAATTTCACAA
86812727 TCGAGGGTAA
Statistics
Matches: 108, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
54 103 0.95
55 5 0.05
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTCACAAACCAGGGGTATTTTGGTAATTCTACAAACTAG
Found at i:86812712 original size:27 final size:27
Alignment explanation
Indices: 86812543--86812693 Score: 176
Period size: 27 Copynumber: 5.6 Consensus size: 27
86812533 CATCCTACAA
* * * * *
86812543 GGGTGTTTTGGTAAATCTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAG
** ** *
86812570 GGGTATTTCAGTAATTTTGTAAATTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
86812597 GGGTATTTTGGTAATTTCACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
86812624 TGGTATTTTGGTAATTTTACAAACTAT
1 GGGTATTTTGGTAATTTTACAAACTAG
86812651 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
86812678 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
86812694 CTATCCTACA
Statistics
Matches: 101, Mismatches: 23, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 101 1.00
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:86812719 original size:81 final size:81
Alignment explanation
Indices: 86812513--86812726 Score: 225
Period size: 81 Copynumber: 2.6 Consensus size: 81
86812503 TTTTACCTAT
* * * * * *
86812513 TAGGGGTATTTTAGTCATTTCATCCTACAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTT
1 TAGGGGTATTTTGGTAATTTCATCCTACAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
** *
86812578 CAGTAATTTTGTAAAT
66 CAGTAATTTTACAAAC
** * * *
86812594 TAGGGGTATTTTGGTAATTTCA-CAAACCAGTGGTATTTTGGTAATTTTACAAACTATGGGTATT
1 TAGGGGTATTTTGGTAATTTCATCCTA-CAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATT
**
86812658 TTGGTAATTTTACAAAC
65 TCAGTAATTTTACAAAC
** *
86812675 TAGGGGTATTTTGGTAA-TTCTATCCTACAGGGGTATTTCAGTAATTTCACAA
1 TAGGGGTATTTTGGTAATTTC-ATCCTACAGGGGTATTTTGGTAATTTTACAA
86812727 TCGAGGGTAA
Statistics
Matches: 108, Mismatches: 22, Indels: 6
0.79 0.16 0.04
Matches are distributed among these distances:
80 5 0.05
81 101 0.94
82 2 0.02
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39
Consensus pattern (81 bp):
TAGGGGTATTTTGGTAATTTCATCCTACAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
CAGTAATTTTACAAAC
Found at i:86812759 original size:27 final size:27
Alignment explanation
Indices: 86812725--86812870 Score: 206
Period size: 27 Copynumber: 5.4 Consensus size: 27
86812715 GTAATTTCAC
*
86812725 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
86812752 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTTTGTA
* *
86812779 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* *
86812806 AA-CTAAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAATGGTAATTTTGTA
86812833 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
*
86812860 AATCGGGGGTA
1 AATCGAGGGTA
86812871 CTTTGATAAT
Statistics
Matches: 105, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
26 2 0.02
27 101 0.96
28 2 0.02
ACGTcount: A:0.38, C:0.06, G:0.26, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTGTA
Found at i:86812870 original size:54 final size:54
Alignment explanation
Indices: 86812725--86812861 Score: 238
Period size: 54 Copynumber: 2.5 Consensus size: 54
86812715 GTAATTTCAC
*
86812725 AATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTCTGTA
* *
86812779 AATCGAGGGTAAAACGATAATTTTGTAAACTAAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTCTGTA
*
86812833 AATCGAGGGTAAAATGGTAATTTTGTAAA
1 AATCGAGGGTAAAACGGTAATTTTGTAAA
86812862 TCGGGGGTAC
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 78 1.00
ACGTcount: A:0.39, C:0.06, G:0.24, T:0.31
Consensus pattern (54 bp):
AATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTCTGTA
Found at i:86812880 original size:27 final size:26
Alignment explanation
Indices: 86812831--86813023 Score: 129
Period size: 27 Copynumber: 7.2 Consensus size: 26
86812821 GGTAATTCTG
** * *
86812831 TAAATCGAGGGTAAAATGGTAATTTTG
1 TAAATCGAGGGT-ATTTGATAATTTTA
*
86812858 TAAATCGGGGGTACTTTGATAATTTTA
1 TAAATCGAGGGTA-TTTGATAATTTTA
* * *
86812885 CAAGTCGAGGGTATTTCAATAATTTTA
1 TAAATCGAGGGTATTT-GATAATTTTA
* * *
86812912 -CAATCGACGGTATTTTAGTAATTTTA
1 TAAATCGAGGGTATTTGA-TAATTTTA
*
86812938 TAAATC-AGGGGTACTTTGGTAATTTTA
1 TAAATCGA-GGGTA-TTTGATAATTTTA
* * * *
86812965 CAAGTCGAAGGTATTTTAATAATTTTA
1 TAAATCGAGGGTA-TTTGATAATTTTA
* *
86812992 CAAATCGAGGGTATTTCAGTAATTTTA
1 TAAATCGAGGGTATTTGA-TAATTTTA
86813019 GTAAA
1 -TAAA
86813024 CTAAAGTATT
Statistics
Matches: 130, Mismatches: 27, Indels: 17
0.75 0.16 0.10
Matches are distributed among these distances:
25 1 0.01
26 29 0.22
27 93 0.72
28 7 0.05
ACGTcount: A:0.34, C:0.08, G:0.20, T:0.38
Consensus pattern (26 bp):
TAAATCGAGGGTATTTGATAATTTTA
Found at i:86812893 original size:54 final size:53
Alignment explanation
Indices: 86812715--86812897 Score: 210
Period size: 54 Copynumber: 3.4 Consensus size: 53
86812705 GGGTATTTCA
*
86812715 GTAATTTCACAATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATG
1 GTAATTTTACAATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATG
* *
86812768 GTAATTTTGTA-AATCGAGGGTAAAACGATAATTTTGTAAACTAAGGGTAAAATG
1 GTAA-TTT-TACAATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATG
* * ***
86812822 GTAATTCTGTA-AATCGAGGGTAAAATGGTAATTTTGTAAA-TCGGGGGTACTTTG
1 GTAATT-T-TACAATCGAGGGTAAAACGGTAATTTTGTAAACT-GAGGGTAAAATG
*
86812876 ATAATTTTACAAGTCGAGGGTA
1 GTAATTTTACAA-TCGAGGGTA
86812898 TTTCAATAAT
Statistics
Matches: 113, Mismatches: 11, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
52 2 0.02
53 10 0.09
54 100 0.88
55 1 0.01
ACGTcount: A:0.36, C:0.08, G:0.25, T:0.32
Consensus pattern (53 bp):
GTAATTTTACAATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATG
Found at i:86812896 original size:81 final size:80
Alignment explanation
Indices: 86812716--86812977 Score: 221
Period size: 81 Copynumber: 3.3 Consensus size: 80
86812706 GGTATTTCAG
* *
86812716 TAATTTCACAA-TCGAGGGTAAAACGGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTA
1 TAATTTTACAAGTCGAGGGTAAAATGGTAA-TTTGTAAATC-GAGGGTAAAATGGTAATTTTGTA
* ****
86812779 AATCGAGGGTAAAACGA
64 AATCGGGGGTACTTTGA
* *
86812796 TAATTTTGTA-AACT-AAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTGT
1 TAA-TTT-TACAAGTCGAGGGTAAAATGGTAATT-TGTAAATCGAGGGTAAAATGGTAATTTTGT
86812859 AAATCGGGGGTACTTTGA
63 AAATCGGGGGTACTTTGA
** ** * *** * *
86812877 TAATTTTACAAGTCGAGGGT-ATTTCAATAATTT-TACAATCGACGGTATTTTAGTAATTTTATA
1 TAATTTTACAAGTCGAGGGTAAAAT-GGTAATTTGTA-AATCGAGGGTAAAATGGTAATTTTGTA
* *
86812940 AATCAGGGGTACTTTGG
64 AATCGGGGGTACTTTGA
*
86812957 TAATTTTACAAGTCGAAGGTA
1 TAATTTTACAAGTCGAGGGTA
86812978 TTTTAATAAT
Statistics
Matches: 149, Mismatches: 23, Indels: 19
0.78 0.12 0.10
Matches are distributed among these distances:
79 4 0.03
80 69 0.46
81 73 0.49
82 3 0.02
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.34
Consensus pattern (80 bp):
TAATTTTACAAGTCGAGGGTAAAATGGTAATTTGTAAATCGAGGGTAAAATGGTAATTTTGTAAA
TCGGGGGTACTTTGA
Found at i:86812908 original size:54 final size:53
Alignment explanation
Indices: 86812849--86813023 Score: 151
Period size: 54 Copynumber: 3.2 Consensus size: 53
86812839 GGGTAAAATG
** * *
86812849 GTAATTTTGTAAATCGGGGGTACTTTGATAATTTTACAAGTCGAGGGTATTTCA
1 GTAATTTTGTAAATCGAAGGTA-TTTAATAATTTTACAAATCGAGGGTATTTCA
* * * * *
86812903 ATAA-TTT-TACAATCGACGGTATTTTAGTAATTTTATAAATC-AGGGGTACTTT-G
1 GTAATTTTGTA-AATCGAAGGTA-TTTAATAATTTTACAAATCGA-GGGTA-TTTCA
** *
86812956 GTAATTTTACAAGTCGAAGGTATTTTAATAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTGTAAATCGAAGGTA-TTTAATAATTTTACAAATCGAGGGTATTTCA
86813010 GTAATTTTAGTAAA
1 GTAATTTT-GTAAA
86813024 CTAAAGTATT
Statistics
Matches: 94, Mismatches: 19, Indels: 15
0.73 0.15 0.12
Matches are distributed among these distances:
52 3 0.03
53 38 0.40
54 49 0.52
55 4 0.04
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.40
Consensus pattern (53 bp):
GTAATTTTGTAAATCGAAGGTATTTAATAATTTTACAAATCGAGGGTATTTCA
Found at i:86812949 original size:80 final size:81
Alignment explanation
Indices: 86812849--86813023 Score: 271
Period size: 80 Copynumber: 2.2 Consensus size: 81
86812839 GGGTAAAATG
* * *
86812849 GTAATTTTGTAAATCGGGGGTACTTTGATAATTTTACAAGTCGAGGGTATTTCAATAATTTTAC-
1 GTAATTTTATAAATCAGGGGTACTTTGATAATTTTACAAGTCGAAGGTATTTCAATAATTTTACA
*
86812913 AATCGACGGTATTTTA
66 AATCGACGGTATTTCA
* *
86812929 GTAATTTTATAAATCAGGGGTACTTTGGTAATTTTACAAGTCGAAGGTATTTTAATAATTTTACA
1 GTAATTTTATAAATCAGGGGTACTTTGATAATTTTACAAGTCGAAGGTATTTCAATAATTTTACA
*
86812994 AATCGAGGGTATTTCA
66 AATCGACGGTATTTCA
86813010 GTAATTTTAGTAAA
1 GTAATTTTA-TAAA
86813024 CTAAAGTATT
Statistics
Matches: 86, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
80 59 0.69
81 23 0.27
82 4 0.05
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.40
Consensus pattern (81 bp):
GTAATTTTATAAATCAGGGGTACTTTGATAATTTTACAAGTCGAAGGTATTTCAATAATTTTACA
AATCGACGGTATTTCA
Found at i:86813033 original size:54 final size:53
Alignment explanation
Indices: 86812867--86813018 Score: 191
Period size: 54 Copynumber: 2.8 Consensus size: 53
86812857 GTAAATCGGG
* * * * *
86812867 GGTACTTTGATAATTTTACAAGTCGAGGGTATTTCAATAATTTTACAATCGAC
1 GGTATTTTAATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGAA
* * *
86812920 GGTATTTTAGTAATTTTATAAATC-AGGGGTACTTT-GGTAATTTTACAAGTCGAA
1 GGTATTTTAATAATTTTACAAATCGA-GGGTA-TTTCAGTAATTTTACAA-TCGAA
86812974 GGTATTTTAATAATTTTACAAATCGAGGGTATTTCAGTAATTTTA
1 GGTATTTTAATAATTTTACAAATCGAGGGTATTTCAGTAATTTTA
86813019 GTAAACTAAA
Statistics
Matches: 83, Mismatches: 11, Indels: 9
0.81 0.11 0.09
Matches are distributed among these distances:
52 1 0.01
53 38 0.46
54 43 0.52
55 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.41
Consensus pattern (53 bp):
GGTATTTTAATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGAA
Found at i:86815238 original size:49 final size:46
Alignment explanation
Indices: 86815176--86815490 Score: 216
Period size: 49 Copynumber: 6.7 Consensus size: 46
86815166 TGGGTAAAAT
*
86815176 GCTGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTTCGAG
1 GCTGATG-CATGTCCCAGACATGGTCTTACACTGGCT-TCATC-TCGAG
* * *
86815225 GCTGATGCTATGTCCTAGACATGGTCTTACACT-GCTCTCA-CATAGCCG
1 GCTGATGC-ATGTCCCAGACATGGTCTTACACTGGCT-TCATC-TCG-AG
* * *
86815273 TG-TCGATGTCATGTCCTAGACATGGTCTTACACTGGC-ACATCTCGTG
1 -GCT-GATG-CATGTCCCAGACATGGTCTTACACTGGCTTCATCTCGAG
* * * * *
86815320 GCTGATACATGTCCCAGACAT-GTTTTATACTGGCTTACGTCCCGAG
1 GCTGATGCATGTCCCAGACATGGTCTTACACTGGCTT-CATCTCGAG
* * * * * *
86815366 GTTGATGCATGTCCCAAACAT-GTCTTACACTAGCACTT-GTCTCAAT
1 GCTGATGCATGTCCCAGACATGGTCTTACACT-G-GCTTCATCTCGAG
* * * *
86815412 ACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCTGATG-CATGTCCCAGACATGGTCTTACACTGGCT-TCAT-CTCGAG
*
86815460 GCCGATGCATGTCCCAGACAT-GTCTTACACT
1 GCTGATGCATGTCCCAGACATGGTCTTACACT
86815491 AGCTCACACA
Statistics
Matches: 212, Mismatches: 37, Indels: 37
0.74 0.13 0.13
Matches are distributed among these distances:
44 11 0.05
45 13 0.06
46 57 0.27
47 35 0.17
48 32 0.15
49 61 0.29
50 3 0.01
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (46 bp):
GCTGATGCATGTCCCAGACATGGTCTTACACTGGCTTCATCTCGAG
Found at i:86821945 original size:22 final size:23
Alignment explanation
Indices: 86821905--86821950 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
86821895 GACCCAACTA
86821905 ATGTGGCCCACACGACCT-ACAC
1 ATGTGGCCCACACGACCTAACAC
* * *
86821927 ATGTGGTCCACATGGCCTAACAC
1 ATGTGGCCCACACGACCTAACAC
86821950 A
1 A
86821951 CGACCTACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.28, C:0.35, G:0.20, T:0.17
Consensus pattern (23 bp):
ATGTGGCCCACACGACCTAACAC
Found at i:86822595 original size:12 final size:13
Alignment explanation
Indices: 86822573--86822611 Score: 53
Period size: 12 Copynumber: 3.0 Consensus size: 13
86822563 GAAGAGGAAG
*
86822573 GAAAAAGAAAATA
1 GAAAAAGAAAAAA
86822586 GAAAAA-AAAAAA
1 GAAAAAGAAAAAA
86822598 GAAAGAAGAAAAAA
1 GAAA-AAGAAAAAA
86822612 CTAACGTGAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
12 9 0.39
13 8 0.35
14 6 0.26
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (13 bp):
GAAAAAGAAAAAA
Found at i:86822598 original size:19 final size:19
Alignment explanation
Indices: 86822574--86822611 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
86822564 AAGAGGAAGG
86822574 AAAAAGAAA-ATAGAAAAAA
1 AAAAAGAAAGA-AGAAAAAA
86822593 AAAAAGAAAGAAGAAAAAA
1 AAAAAGAAAGAAGAAAAAA
86822612 CTAACGTGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 17 0.94
20 1 0.06
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03
Consensus pattern (19 bp):
AAAAAGAAAGAAGAAAAAA
Found at i:86822815 original size:80 final size:80
Alignment explanation
Indices: 86822730--86822887 Score: 307
Period size: 80 Copynumber: 2.0 Consensus size: 80
86822720 TTATCAGATT
*
86822730 TTTTTTCCCCTTGAATTCCACTCAACTTCCTCCATATGGGTGGCATTAACTAGAAATAATAAAAA
1 TTTTTTCCCCTTGAATTCCACTCAACTTCCTCCATATAGGTGGCATTAACTAGAAATAATAAAAA
86822795 TAATTTCATTGTGTG
66 TAATTTCATTGTGTG
86822810 TTTTTTCCCCTTGAATTCCACTCAACTTCCTCCATATAGGTGGCATTAACTAGAAATAATAAAAA
1 TTTTTTCCCCTTGAATTCCACTCAACTTCCTCCATATAGGTGGCATTAACTAGAAATAATAAAAA
86822875 TAATTTCATTGTG
66 TAATTTCATTGTG
86822888 CACACACTGG
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 77 1.00
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.37
Consensus pattern (80 bp):
TTTTTTCCCCTTGAATTCCACTCAACTTCCTCCATATAGGTGGCATTAACTAGAAATAATAAAAA
TAATTTCATTGTGTG
Found at i:86825007 original size:3 final size:3
Alignment explanation
Indices: 86824994--86825834 Score: 1673
Period size: 3 Copynumber: 280.3 Consensus size: 3
86824984 TTCTTTACTC
*
86824994 TCT TTT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
86825042 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
86825090 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
86825138 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
86825186 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
86825234 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
86825282 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
86825330 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
86825378 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
86825426 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
86825474 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
86825522 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
86825570 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
86825618 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
86825666 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
86825714 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
86825762 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
86825810 TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT T
86825835 TTTTGTGCAT
Statistics
Matches: 836, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 836 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:86835223 original size:14 final size:15
Alignment explanation
Indices: 86835204--86835233 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
86835194 AATCTAAAAA
86835204 TTAAAAAAT-ATTTT
1 TTAAAAAATCATTTT
86835218 TTAAAAAATCATTTT
1 TTAAAAAATCATTTT
86835233 T
1 T
86835234 AGTCCTATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (15 bp):
TTAAAAAATCATTTT
Found at i:86837235 original size:28 final size:29
Alignment explanation
Indices: 86837206--86837262 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
86837196 TATACTTTTT
86837206 AAAGGACTAAATCAAAATTTTATCATTTA
1 AAAGGACTAAATCAAAATTTTATCATTTA
** *
86837235 AAATTATTAAATCAAAATTTTATCATTT
1 AAAGGACTAAATCAAAATTTTATCATTT
86837263 TTGAAGAGAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.40
Consensus pattern (29 bp):
AAAGGACTAAATCAAAATTTTATCATTTA
Found at i:86837705 original size:94 final size:94
Alignment explanation
Indices: 86837544--86837715 Score: 326
Period size: 94 Copynumber: 1.8 Consensus size: 94
86837534 TATAAAAAAT
*
86837544 TTTGATATGAAAATCAAATATAACTTTGATTGAAATGGTATAGCGAGAAAGAAGATTTTGAGGTA
1 TTTGATATGAAAATCAAATATAACTTTGATTGAAATGGTATAACGAGAAAGAAGATTTTGAGGTA
86837609 TTGGATTCAAATCACATAATGTGCATGTA
66 TTGGATTCAAATCACATAATGTGCATGTA
*
86837638 TTTGATATGAAAATCAAATATAACTTTGATTTAAATGGTATAACGAGAAAGAAGATTTTGAGGTA
1 TTTGATATGAAAATCAAATATAACTTTGATTGAAATGGTATAACGAGAAAGAAGATTTTGAGGTA
86837703 TTGGATTCAAATC
66 TTGGATTCAAATC
86837716 CTATTAATCA
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 76 1.00
ACGTcount: A:0.40, C:0.07, G:0.19, T:0.34
Consensus pattern (94 bp):
TTTGATATGAAAATCAAATATAACTTTGATTGAAATGGTATAACGAGAAAGAAGATTTTGAGGTA
TTGGATTCAAATCACATAATGTGCATGTA
Found at i:86840335 original size:23 final size:22
Alignment explanation
Indices: 86840283--86840335 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
86840273 TCCACGTCTT
*
86840283 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
86840305 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
86840328 TTTCTTTT
1 TTTCTTTT
86840336 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:86844726 original size:153 final size:153
Alignment explanation
Indices: 86844514--86847540 Score: 3797
Period size: 153 Copynumber: 19.8 Consensus size: 153
86844504 AAGATAAATT
* * *
86844514 TTTGAGAACTTATAGCTTAACCCGATCGATTCATGCAACTAGCTAATAAATATAGCAATTAGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* * * * * * * *
86844579 TTCCCTAAATCTTAATTTATTACC-ATTTTATTAAAAAAAATAAACCATCGCCAATAAAATCAAG
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATT-AAAAATATAAACCATCACCAACAAAATCAAG
* *
86844643 ATTAATGTGCTGCTACTATGTGTC
130 ATTAATGTGCTGCTAATATGCGTC
* * ** * *
86844667 TTTGAGAACTTATAGCTTAACTTGATCAACACATGCAACTAGCTAATAAATATAGCAATTGGGCT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* * * *
86844732 TCCCCTTAATCTTAAAGTATTACATCTTTTATTAAAAATATAAACCATCACCCACAAAATCAAGA
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCAACAAAATCAAGA
** * * *
86844797 TTAATGTAATACTAATATTCATC
131 TTAATGTGCTGCTAATATGCGTC
* * * * *
86844820 TTTGAGAATTTATAGCTTAACTCGATTGATTCATGCAACTAGCTAATAAATATTGCAATTGAACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* * *
86844885 TCCCATTCATCTCAAATTATTTCCTCTTTTATTAAAAATATAAACCATCACCAACAAAATCAAGA
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCAACAAAATCAAGA
* *
86844950 TTAACGTG-T-CATTAATATTCGTC
131 TTAATGTGCTGC--TAATATGCGTC
* * * * *
86844973 TTTGAGAACTTATAGCTTAAATCGATCGATTC-T-C-AGTTGCTTAATAAATAATA-CAATTGAA
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGC-TAATAAAT-ATAGCAGTTGGA
* * * *
86845034 CTTCCCCTTATTCTAAAATTATTACCTCTTTTATT-AAAATAAAAACCATCACCCACAAAATCAA
64 CTTCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCAACAAAATCAA
*
86845098 GATTAATGTGCTTCTAATATGCGTC
129 GATTAATGTGCTGCTAATATGCGTC
* * *
86845123 TTTGAGAACTTATAGCTTAACTTGATTGATTCATGCAACTAACTAATAAATATAGCAGTTGGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* * *
86845188 T-CCCTTAATCTCAAATTATTACCACTTTTATTAAAAATGTAAACCATCACCAACAAAATTAAGA
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCAACAAAATCAAGA
* *
86845252 TTAATGTGCTGCTCATATGTGTC
131 TTAATGTGCTGCTAATATGCGTC
* ** * * * *
86845275 TTTGAGAAATTATAGCTTAACTTAATTGATTCATGCAAATAGCTAATAAATATTGCAATT-GATC
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGA-C
* * * *
86845339 TTTCCCTTAATCTCAAATTATTTCCTCTTTTATTAAAAATATAAACTATC-GCAGACAAAATCAA
65 TTCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCA-ACAAAATCAA
* *
86845403 GATTAACGTG-T-CATTAATATTCGTC
129 GATTAATGTGCTGC--TAATATGCGTC
* * * * *
86845428 TTTGAGAACTTATAGCTTAAATCGATCGATTC-T-C-AGTTGCTTAATAAATAATA-CAATTGAA
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGC-TAATAAAT-ATAGCAGTTGGA
* * * *
86845489 CTTCCCCTTATTCTAAAATTATTACCTCTTTTATT-AAAATAAAAACCATCACCCACAAAATCAA
64 CTTCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCAACAAAATCAA
*
86845553 GATTAATGTGCTTCTAATATGCGTC
129 GATTAATGTGCTGCTAATATGCGTC
* * *
86845578 TTTGAGAACTTATAGCTTAACTTGATTGATTCATGCAACTAACTAATAAATATAGCAGTTGGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* * *
86845643 T-CCCTTAATCTCAAATTATTACCACTTTTATTAAAAATGTAAACCATCACCAACAAAATTAAGA
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCAACAAAATCAAGA
* *
86845707 TTAATGTGCTGCTCATATGTGTC
131 TTAATGTGCTGCTAATATGCGTC
* ** * * * *
86845730 TTTGAGAAATTATAGCTTAACTTAATTGATTCATGCAAATAGCTAATAAATATTGCAATT-GATC
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGA-C
* * * *
86845794 TTTCCCTTAATCTCAAATTATTTCCTCTTTTATTAAAAATATAAACTATC-GCAGACAAAATCAA
65 TTCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCA-ACAAAATCAA
* * * *
86845858 GATTAATGTGCTTCTAACATGTGTT
129 GATTAATGTGCTGCTAATATGCGTC
* * * * **
86845883 TTTTAGAACTTATAGCTTAACTTGATCGATTCATGCAACAAGGTAATAAATATAATAGTTGGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* ***
86845948 TCCCCTTAATCTCAAATTATCACCTCTTTTATTAAAAATATAAACCATCATTGACAAAATCAAGA
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCAACAAAATCAAGA
86846013 TTAATGTGCTGCTAATATGCGTC
131 TTAATGTGCTGCTAATATGCGTC
* * *
86846036 TTTGAGAACTTATAGCTTAATTCGATCGATACATGCAACTAGCTAATAAATATAGTAGTTGGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* *
86846101 TCCCCTTAATCTCAAAGTATTACCTCTTTTATTAAAAATATAAACCATCACCCACAAAATCAAGA
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCAACAAAATCAAGA
* * * *
86846166 TTAATGTACTACTAATATACATC
131 TTAATGTGCTGCTAATATGCGTC
* * * * *
86846189 TTTAAGAACTTATAGCTTAACTCGATCGATTCGTACAACTTGCTAATAAACATAGCAGTTGGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* * *
86846254 TCCCCTTAATATCAAATTATTACCTCTTTTATTAAAAATATAAACCATCGA-CGACAAAATCAAT
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATC-ACCAACAAAATCAAG
* * *
86846318 ATTAATGTGCTGTTAATATACATC
130 ATTAATGTGCTGCTAATATGCGTC
* *
86846342 TTTGAGAACTTATAGCTTAACTCGGTCGATTCATGCAACTAGCTAATAAATATAACAGTTGGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* * * * *
86846407 TCCGCTTAATCTCAAATTATTACCTTTTTTATTAAAAGTATAAACTATCACCCACAAAATCAAGA
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCAACAAAATCAAGA
* * * *
86846472 TTAATATACTACTAATATGCATC
131 TTAATGTGCTGCTAATATGCGTC
* * *
86846495 TTTGAGAAAC-TATAGCTTAACTCGATCAATTCATGCATCTAGCTAATAAATATAGCTGTTGGAC
1 TTTGAG-AACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGAC
* * *
86846559 TTCCCCTTGATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCAACGACAAAAATCAA
65 TTCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCAAC-AAAATCAA
* * *
86846624 GATTAATGTGCTGTTAATATGCATA
129 GATTAATGTGCTGCTAATATGCGTC
* *
86846649 TTTGAGAACTTATAGCTTAACTCGATCGATTGATGCAACTAGCTAATAAATATAACAGTTGGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* * *
86846714 TCCCCTTAATCTCTAATTATTACCTCTTTTATTAAAAATATAAACCATCGA-CGAGAAAATC-AG
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATC-ACCAACAAAATCAAG
*
86846777 TATTAATGTGCTGCTAATATGCGTA
130 -ATTAATGTGCTGCTAATATGCGTC
** * * * *
86846802 TTTTTGAACTTATAGCTTAACTCAATCAATTCATGCAACTAGCTAATAAATATAACAATTGGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
*
86846867 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATTGA-CAACAAAAATCAA
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCA-TCACCAAC-AAAATCAA
*
86846931 GATTAATGTGCTGCTAATATGCATC
129 GATTAATGTGCTGCTAATATGCGTC
* * *
86846956 TTTGAGAACTTATAGCTTAACTCGATCAATTCATGCAACTAGCTAAAAAATATAGCAGTTGAACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* * *
86847021 TCCCCTTAATCTCAAATTATTACCT-TTCTTATTAAAAAAAATAAACCATCGCCGACAAAATCAA
66 TCCCCTTAATCTCAAATTATTACCTCTT-TTATT-AAAAATATAAACCATCACCAACAAAATCAA
* ** *
86847085 GATTAAGGTATTGCTAATATGTGTC
129 GATTAATGTGCTGCTAATATGCGTC
* * * * * *
86847110 TTTGAGAACCTATAGCTTAACTCGACCAATACATGTAGCTAGCTAATAAATATAGCAGTTGGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* * * * *
86847175 TCCCTTTACTCTCAAAGTATTACCTATTTTATTAAAAATATAAACCATCACCCACAAAATCAAGA
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCAACAAAATCAAGA
* *
86847240 TTAATGTACTACTAATATGCGTC
131 TTAATGTGCTGCTAATATGCGTC
* * *
86847263 TTTGAAAACTTATAGCTTAACTCGATTGATTCATGCAACTAGCTAATAAATATAGTAGTTGGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* *
86847328 TCCCTTTAATCTCAACTTATTACCTCTTTTATTAAAAATATAAACCATCACCCAA-AAAATCAAG
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCA-CCAACAAAATCAAG
* *
86847392 ATTAATGTGTTGCTAATATGCATC
130 ATTAATGTGCTGCTAATATGCGTC
* * * * *
86847416 TTTGAGAACTTATAGCTTAACTTGATCGATTCATGCAATTAGATAAAAAATATAGTAGTTGGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* * * **
86847481 TCCCCTTAATCTCAAAGTATTAACTCTTTTATTAAAAAAATAAACCATCACTGACAAAAT
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCAACAAAAT
86847541 TGTAACAACC
Statistics
Matches: 2505, Mismatches: 320, Indels: 98
0.86 0.11 0.03
Matches are distributed among these distances:
150 154 0.06
151 165 0.07
152 264 0.11
153 1520 0.61
154 381 0.15
155 21 0.01
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.34
Consensus pattern (153 bp):
TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCAACAAAATCAAGA
TTAATGTGCTGCTAATATGCGTC
Found at i:86845472 original size:455 final size:457
Alignment explanation
Indices: 86844514--86847540 Score: 3815
Period size: 455 Copynumber: 6.6 Consensus size: 457
86844504 AAGATAAATT
* *
86844514 TTTGAGAACTTATAGCTTAACCCGATCGATTCATGCAACTAGCTAATAAATATAGCAATTAGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATA-CAATTGGACT
* * * * * * * * *
86844579 TTCCCTAAATCTTAATTTATTACC-ATTTTATTAAAAAAAATAAACCATCGCCAATAAAATCAAG
65 TCCCCTTAATCTCAAATTATTACCTCTTTTATT-AAAAATATAAACCATCACCCACAAAATCAAG
* * * **
86844643 ATTAATGTGCTGCTACTATGTGTCTTTGAGAACTTATAGCTTAACTTGATCAACACATGCAACTA
129 ATTAATGTGCTGCTAATATGCGTCTTTGAGAACTTATAGCTTAACTTGATCGATTCATGCAACTA
* * * *
86844708 GCTAATAAATATAGCAATTGGGCTTCCCCTTAATCTTAAAGTATTA-CATCTTTTATTAAAAATA
194 GCTAATAAATATAGCAGTTGGACTTCCCCTTAATCTCAAATTATTACCA-CTTTTATTAAAAATA
* * * *
86844772 TAAACCATCACCCACAAAATCAAGATTAATGTAATACTAATAT-TCATCTTTGAGAATTTATAGC
258 TAAACCATCACCGACAAAATCAAGATTAATGTACTGCTAATATGT-ATCTTTGAGAACTTATAGC
* * * *
86844836 TTAACTCGATTGATTCATGCAACTAGCTAATAAATATTGCAATTGAAC-TTCCCATTCATCTCAA
322 TTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAATTGGACTTTCCC-TTAATCTCAA
* * *
86844900 ATTATTTCCTCTTTTATTAAAAATATAAACCATCACCA-ACAAAATCAAGATTAACGTGTCATTA
386 ATTATTACCTCTTTTATTAAAAATATAAACCATC-GCAGACAAAATCAAGATTAATGTG-CATTA
86844964 ATATTCGTC
449 ATATTCGTC
* * * *
86844973 TTTGAGAACTTATAGCTTAAATCGATCGATTC-T-C-AGTTGCTTAATAAATAATACAATTGAAC
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGC-TAATAAAT-ATACAATTGGAC
* * *
86845035 TTCCCCTTATTCTAAAATTATTACCTCTTTTATT-AAAATAAAAACCATCACCCACAAAATCAAG
64 TTCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCCACAAAATCAAG
* *
86845099 ATTAATGTGCTTCTAATATGCGTCTTTGAGAACTTATAGCTTAACTTGATTGATTCATGCAACTA
129 ATTAATGTGCTGCTAATATGCGTCTTTGAGAACTTATAGCTTAACTTGATCGATTCATGCAACTA
* *
86845164 ACTAATAAATATAGCAGTTGGACTT-CCCTTAATCTCAAATTATTACCACTTTTATTAAAAATGT
194 GCTAATAAATATAGCAGTTGGACTTCCCCTTAATCTCAAATTATTACCACTTTTATTAAAAATAT
* * * * * *
86845228 AAACCATCACCAACAAAATTAAGATTAATGTGCTGCTCATATGTGTCTTTGAGAAATTATAGCTT
259 AAACCATCACCGACAAAATCAAGATTAATGTACTGCTAATATGTATCTTTGAGAACTTATAGCTT
** * * *
86845293 AACTTAATTGATTCATGCAAATAGCTAATAAATATTGCAATT-GATCTTTCCCTTAATCTCAAAT
324 AACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAATTGGA-CTTTCCCTTAATCTCAAAT
* * *
86845357 TATTTCCTCTTTTATTAAAAATATAAACTATCGCAGACAAAATCAAGATTAACGTGTCATTAATA
388 TATTACCTCTTTTATTAAAAATATAAACCATCGCAGACAAAATCAAGATTAATGTG-CATTAATA
86845422 TTCGTC
452 TTCGTC
* * * *
86845428 TTTGAGAACTTATAGCTTAAATCGATCGATTC-T-C-AGTTGCTTAATAAATAATACAATTGAAC
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGC-TAATAAAT-ATACAATTGGAC
* * *
86845490 TTCCCCTTATTCTAAAATTATTACCTCTTTTATT-AAAATAAAAACCATCACCCACAAAATCAAG
64 TTCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCCACAAAATCAAG
* *
86845554 ATTAATGTGCTTCTAATATGCGTCTTTGAGAACTTATAGCTTAACTTGATTGATTCATGCAACTA
129 ATTAATGTGCTGCTAATATGCGTCTTTGAGAACTTATAGCTTAACTTGATCGATTCATGCAACTA
* *
86845619 ACTAATAAATATAGCAGTTGGACTT-CCCTTAATCTCAAATTATTACCACTTTTATTAAAAATGT
194 GCTAATAAATATAGCAGTTGGACTTCCCCTTAATCTCAAATTATTACCACTTTTATTAAAAATAT
* * * * * *
86845683 AAACCATCACCAACAAAATTAAGATTAATGTGCTGCTCATATGTGTCTTTGAGAAATTATAGCTT
259 AAACCATCACCGACAAAATCAAGATTAATGTACTGCTAATATGTATCTTTGAGAACTTATAGCTT
** * * *
86845748 AACTTAATTGATTCATGCAAATAGCTAATAAATATTGCAATT-GATCTTTCCCTTAATCTCAAAT
324 AACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAATTGGA-CTTTCCCTTAATCTCAAAT
* * * *
86845812 TATTTCCTCTTTTATTAAAAATATAAACTATCGCAGACAAAATCAAGATTAATGTGCTTCTAACA
388 TATTACCTCTTTTATTAAAAATATAAACCATCGCAGACAAAATCAAGATTAATGTGCAT-TAATA
*
86845877 TGT-GTT
452 T-TCGTC
* * * *
86845883 TTTTAGAACTTATAGCTTAACTTGATCGATTCATGCAACAAGGTAATAAATATA-ATAGTTGGAC
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATACA-A-TTGGAC
* ***
86845947 TTCCCCTTAATCTCAAATTATCACCTCTTTTATTAAAAATATAAACCATCATTGACAAAATCAAG
64 TTCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCCACAAAATCAAG
*
86846012 ATTAATGTGCTGCTAATATGCGTCTTTGAGAACTTATAGCTTAA-TTCGATCGATACATGCAACT
129 ATTAATGTGCTGCTAATATGCGTCTTTGAGAACTTATAGCTTAACTT-GATCGATTCATGCAACT
* * *
86846076 AGCTAATAAATATAGTAGTTGGACTTCCCCTTAATCTCAAAGTATTACCTCTTTTATTAAAAATA
193 AGCTAATAAATATAGCAGTTGGACTTCCCCTTAATCTCAAATTATTACCACTTTTATTAAAAATA
* * ** *
86846141 TAAACCATCACCCACAAAATCAAGATTAATGTACTACTAATATACATCTTTAAGAACTTATAGCT
258 TAAACCATCACCGACAAAATCAAGATTAATGTACTGCTAATATGTATCTTTGAGAACTTATAGCT
* * * * * * *
86846206 TAACTCGATCGATTCGTACAACTTGCTAATAAACATAGCAGTTGGACTTCCCCTTAATATCAAAT
323 TAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAATTGGACTTTCCCTTAATCTCAAAT
* *
86846271 TATTACCTCTTTTATTAAAAATATAAACCATCG-ACGACAAAATCAATATTAATGTGCTGTTAAT
388 TATTACCTCTTTTATTAAAAATATAAACCATCGCA-GACAAAATCAAGATTAATGTGC-ATTAAT
* *
86846335 ATACATC
451 ATTCGTC
* *
86846342 TTTGAGAACTTATAGCTTAACTCGGTCGATTCATGCAACTAGCTAATAAATATAACAGTTGGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATAT-ACAATTGGACT
* * * *
86846407 TCCGCTTAATCTCAAATTATTACCTTTTTTATTAAAAGTATAAACTATCACCCACAAAATCAAGA
65 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCCACAAAATCAAGA
* * * * * * *
86846472 TTAATATACTACTAATATGCATCTTTGAGAAAC-TATAGCTTAACTCGATCAATTCATGCATCTA
130 TTAATGTGCTGCTAATATGCGTCTTTGAG-AACTTATAGCTTAACTTGATCGATTCATGCAACTA
* * *
86846536 GCTAATAAATATAGCTGTTGGACTTCCCCTTGATCTCAAATTATTACCTCTTTTATTAAAAATAT
194 GCTAATAAATATAGCAGTTGGACTTCCCCTTAATCTCAAATTATTACCACTTTTATTAAAAATAT
* * * * *
86846601 AAACCATCAACGACAAAAATCAAGATTAATGTGCTGTTAATATGCATATTTGAGAACTTATAGCT
259 AAACCATCACCGAC-AAAATCAAGATTAATGTACTGCTAATATGTATCTTTGAGAACTTATAGCT
* * * * *
86846666 TAACTCGATCGATTGATGCAACTAGCTAATAAATATAACAGTTGGACTTCCCCTTAATCTCTAAT
323 TAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAATTGGACTTTCCCTTAATCTCAAAT
*
86846731 TATTACCTCTTTTATTAAAAATATAAACCATCG-ACGAGAAAATC-AGTATTAATGTGC-TGCTA
388 TATTACCTCTTTTATTAAAAATATAAACCATCGCA-GACAAAATCAAG-ATTAATGTGCAT--TA
* *
86846793 ATATGCGTA
449 ATATTCGTC
** * *
86846802 TTTTTGAACTTATAGCTTAACTCAATCAATTCATGCAACTAGCTAATAAATATAACAATTGGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATAT-ACAATTGGACT
* *
86846867 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATTGA-CAACAAAAATCAA
65 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCA-TCACCCAC-AAAATCAA
* * *
86846931 GATTAATGTGCTGCTAATATGCATCTTTGAGAACTTATAGCTTAACTCGATCAATTCATGCAACT
128 GATTAATGTGCTGCTAATATGCGTCTTTGAGAACTTATAGCTTAACTTGATCGATTCATGCAACT
* * *
86846996 AGCTAAAAAATATAGCAGTTGAACTTCCCCTTAATCTCAAATTATTACC-TTTCTTATTAAAAAA
193 AGCTAATAAATATAGCAGTTGGACTTCCCCTTAATCTCAAATTATTACCACTT-TTATT-AAAAA
* * * * * *
86847060 AATAAACCATCGCCGACAAAATCAAGATTAAGGTATTGCTAATATGTGTCTTTGAGAACCTATAG
256 TATAAACCATCACCGACAAAATCAAGATTAATGTACTGCTAATATGTATCTTTGAGAACTTATAG
* * * * * * *
86847125 CTTAACTCGACCAATACATGTAGCTAGCTAATAAATATAGCAGTTGGAC-TTCCCTTTACTCTCA
321 CTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAATTGGACTTTCCC-TTAATCTCA
* * * ** * *
86847189 AAGTATTACCTATTTTATTAAAAATATAAACCATCACCCACAAAATCAAGATTAATGTACTACTA
385 AATTATTACCTCTTTTATTAAAAATATAAACCATCGCAGACAAAATCAAGATTAATGTGC-ATTA
*
86847254 ATATGCGTC
449 ATATTCGTC
* * * *
86847263 TTTGAAAACTTATAGCTTAACTCGATTGATTCATGCAACTAGCTAATAAATATAGTAGTTGGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATA-CAATTGGACT
* * *
86847328 TCCCTTTAATCTCAACTTATTACCTCTTTTATTAAAAATATAAACCATCACCCAAAAAATCAAGA
65 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCCACAAAATCAAGA
* * *
86847393 TTAATGTGTTGCTAATATGCATCTTTGAGAACTTATAGCTTAACTTGATCGATTCATGCAATTAG
130 TTAATGTGCTGCTAATATGCGTCTTTGAGAACTTATAGCTTAACTTGATCGATTCATGCAACTAG
* * * * * * *
86847458 ATAAAAAATATAGTAGTTGGACTTCCCCTTAATCTCAAAGTATTAACTCTTTTATTAAAAAAATA
195 CTAATAAATATAGCAGTTGGACTTCCCCTTAATCTCAAATTATTACCACTTTTATTAAAAATATA
*
86847523 AACCATCACTGACAAAAT
260 AACCATCACCGACAAAAT
86847541 TGTAACAACC
Statistics
Matches: 2300, Mismatches: 225, Indels: 86
0.88 0.09 0.03
Matches are distributed among these distances:
454 5 0.00
455 681 0.30
456 123 0.05
457 83 0.04
458 123 0.05
459 489 0.21
460 405 0.18
461 370 0.16
462 21 0.01
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.34
Consensus pattern (457 bp):
TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATACAATTGGACTT
CCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCCACAAAATCAAGAT
TAATGTGCTGCTAATATGCGTCTTTGAGAACTTATAGCTTAACTTGATCGATTCATGCAACTAGC
TAATAAATATAGCAGTTGGACTTCCCCTTAATCTCAAATTATTACCACTTTTATTAAAAATATAA
ACCATCACCGACAAAATCAAGATTAATGTACTGCTAATATGTATCTTTGAGAACTTATAGCTTAA
CTCGATCGATTCATGCAACTAGCTAATAAATATAGCAATTGGACTTTCCCTTAATCTCAAATTAT
TACCTCTTTTATTAAAAATATAAACCATCGCAGACAAAATCAAGATTAATGTGCATTAATATTCG
TC
Found at i:86847701 original size:12 final size:12
Alignment explanation
Indices: 86847684--86847713 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
86847674 TAATTTTAGC
86847684 AATTGCATGCTT
1 AATTGCATGCTT
86847696 AATTGCATGCTT
1 AATTGCATGCTT
86847708 AATTGC
1 AATTGC
86847714 GAAAAAGGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.40
Consensus pattern (12 bp):
AATTGCATGCTT
Found at i:86848833 original size:48 final size:48
Alignment explanation
Indices: 86848758--86849081 Score: 271
Period size: 48 Copynumber: 6.8 Consensus size: 48
86848748 TGATATGTGT
* * * *
86848758 GCTAGTGTAAGACCATGTT-TGGAACATGGCATTGGCATTGAGACGAGA
1 GCTAGTGTAAGACCAT-TTCTGGGACATGGCATCGGCATTGACATGAGA
* * * * * *
86848806 GCTAGAGTAAGACCATTTCTGGGACATGGCATCAGCCTCGACATGTGG
1 GCTAGTGTAAGACCATTTCTGGGACATGGCATCGGCATTGACATGAGA
* * * * * **
86848854 GCCAGTGTAAAACCATGTT-TGGAATATGGCATCGGCATTGAGACCAGA
1 GCTAGTGTAAGACCAT-TTCTGGGACATGGCATCGGCATTGACATGAGA
* * * * ** *
86848902 GCTAGTGTAAAACCATGTCTGGGACATGGCATCAGCCTCAACATGTGA
1 GCTAGTGTAAGACCATTTCTGGGACATGGCATCGGCATTGACATGAGA
* * * * *
86848950 GCCAGTGTAAGACCATGTT-TGGAACATGGCATCAGCATTGAGAAGAGA
1 GCTAGTGTAAGACCAT-TTCTGGGACATGGCATCGGCATTGACATGAGA
* * *
86848998 GCTA-TGTAAGACTATGTCTGGGACATGGCATCGGCCTTGACATGTA-A
1 GCTAGTGTAAGACCATTTCTGGGACATGGCATCGGCATTGACATG-AGA
* *
86849045 GATAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 GCTAGTGTAAGACCATTTCTGGGACATGGCATCGGCA
86849082 ATTTACCCTC
Statistics
Matches: 213, Mismatches: 56, Indels: 14
0.75 0.20 0.05
Matches are distributed among these distances:
46 1 0.00
47 38 0.18
48 171 0.80
49 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (48 bp):
GCTAGTGTAAGACCATTTCTGGGACATGGCATCGGCATTGACATGAGA
Found at i:86848894 original size:96 final size:96
Alignment explanation
Indices: 86848752--86849081 Score: 464
Period size: 96 Copynumber: 3.4 Consensus size: 96
86848742 TTTGGGTGAT
* * * *
86848752 ATGTGTGCTAGTGTAAGACCATGTTTGGAACATGGCATTGGCATTGAGACGAGAGCTAGAGTAAG
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAG
*
86848817 ACCATTTCTGGGACATGGCATCAGCCTCGAC
66 ACCATGTCTGGGACATGGCATCAGCCTCGAC
* * * * *
86848848 ATGTGGGCCAGTGTAAAACCATGTTTGGAATATGGCATCGGCATTGAGACCAGAGCTAGTGTAAA
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAG
*
86848913 ACCATGTCTGGGACATGGCATCAGCCTCAAC
66 ACCATGTCTGGGACATGGCATCAGCCTCGAC
* *
86848944 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAGCATTGAGAAGAGAGCTA-TGTAAG
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAG
* * *
86849008 ACTATGTCTGGGACATGGCATCGGCCTTGAC
66 ACCATGTCTGGGACATGGCATCAGCCTCGAC
* ** * *
86849039 ATGTAAGATAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCA
86849082 ATTTACCCTC
Statistics
Matches: 207, Mismatches: 27, Indels: 1
0.88 0.11 0.00
Matches are distributed among these distances:
95 69 0.33
96 138 0.67
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (96 bp):
ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAG
ACCATGTCTGGGACATGGCATCAGCCTCGAC
Found at i:86851313 original size:30 final size:30
Alignment explanation
Indices: 86851277--86851336 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
86851267 AATGCTTATG
86851277 TTATTTTGTCATTGAATTGCCATGAATGCT
1 TTATTTTGTCATTGAATTGCCATGAATGCT
86851307 TTATTTTGTCATTGAATTGCCATGAATGCT
1 TTATTTTGTCATTGAATTGCCATGAATGCT
86851337 GAATGATTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.23, C:0.13, G:0.17, T:0.47
Consensus pattern (30 bp):
TTATTTTGTCATTGAATTGCCATGAATGCT
Found at i:86851524 original size:43 final size:43
Alignment explanation
Indices: 86851447--86851569 Score: 126
Period size: 43 Copynumber: 2.9 Consensus size: 43
86851437 ATTGGGATGT
* * * *
86851447 GATTACATGTAAGACCCTATATGGGACAGTGACATTG-TATTAC
1 GATTACGTGTAAGACCCTGTATGGGACAGTGACATCGTTAAT-C
*
86851490 GATTACGTGTAAGACCATGTATGGGACA-TCGACATCGTTAATC
1 GATTACGTGTAAGACCCTGTATGGGACAGT-GACATCGTTAATC
* * *
86851533 GAATT-CGTGTAAGACCCTGTGTGGGATAGTGGCATCG
1 G-ATTACGTGTAAGACCCTGTATGGGACAGTGACATCG
86851570 ATACGTGTTA
Statistics
Matches: 67, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
42 1 0.01
43 59 0.88
44 7 0.10
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (43 bp):
GATTACGTGTAAGACCCTGTATGGGACAGTGACATCGTTAATC
Found at i:86853437 original size:48 final size:48
Alignment explanation
Indices: 86853362--86853685 Score: 271
Period size: 48 Copynumber: 6.8 Consensus size: 48
86853352 TGATATGTGT
* * * *
86853362 GCTAGTGTAAGACCATGTT-TGGAACATGGCATTGGCATTGAGACGAGA
1 GCTAGTGTAAGACCAT-TTCTGGGACATGGCATCGGCATTGACATGAGA
* * * * * *
86853410 GCTAGAGTAAGACCATTTCTGGGACATGGCATCAGCCTCGACATGTGG
1 GCTAGTGTAAGACCATTTCTGGGACATGGCATCGGCATTGACATGAGA
* * * * * **
86853458 GCCAGTGTAAAACCATGTT-TGGAATATGGCATCGGCATTGAGACCAGA
1 GCTAGTGTAAGACCAT-TTCTGGGACATGGCATCGGCATTGACATGAGA
* * * * ** *
86853506 GCTAGTGTAAAACCATGTCTGGGACATGGCATCAGCCTCAACATGTGA
1 GCTAGTGTAAGACCATTTCTGGGACATGGCATCGGCATTGACATGAGA
* * * * *
86853554 GCCAGTGTAAGACCATGTT-TGGAACATGGCATCAGCATTGAGAAGAGA
1 GCTAGTGTAAGACCAT-TTCTGGGACATGGCATCGGCATTGACATGAGA
* * *
86853602 GCTA-TGTAAGACTATGTCTGGGACATGGCATCGGCCTTGACATGTA-A
1 GCTAGTGTAAGACCATTTCTGGGACATGGCATCGGCATTGACATG-AGA
* *
86853649 GATAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 GCTAGTGTAAGACCATTTCTGGGACATGGCATCGGCA
86853686 ATTTACCCTC
Statistics
Matches: 213, Mismatches: 56, Indels: 14
0.75 0.20 0.05
Matches are distributed among these distances:
46 1 0.00
47 38 0.18
48 171 0.80
49 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (48 bp):
GCTAGTGTAAGACCATTTCTGGGACATGGCATCGGCATTGACATGAGA
Found at i:86853498 original size:96 final size:96
Alignment explanation
Indices: 86853356--86853685 Score: 464
Period size: 96 Copynumber: 3.4 Consensus size: 96
86853346 TTTGGGTGAT
* * * *
86853356 ATGTGTGCTAGTGTAAGACCATGTTTGGAACATGGCATTGGCATTGAGACGAGAGCTAGAGTAAG
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAG
*
86853421 ACCATTTCTGGGACATGGCATCAGCCTCGAC
66 ACCATGTCTGGGACATGGCATCAGCCTCGAC
* * * * *
86853452 ATGTGGGCCAGTGTAAAACCATGTTTGGAATATGGCATCGGCATTGAGACCAGAGCTAGTGTAAA
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAG
*
86853517 ACCATGTCTGGGACATGGCATCAGCCTCAAC
66 ACCATGTCTGGGACATGGCATCAGCCTCGAC
* *
86853548 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAGCATTGAGAAGAGAGCTA-TGTAAG
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAG
* * *
86853612 ACTATGTCTGGGACATGGCATCGGCCTTGAC
66 ACCATGTCTGGGACATGGCATCAGCCTCGAC
* ** * *
86853643 ATGTAAGATAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCA
86853686 ATTTACCCTC
Statistics
Matches: 207, Mismatches: 27, Indels: 1
0.88 0.11 0.00
Matches are distributed among these distances:
95 69 0.33
96 138 0.67
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (96 bp):
ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAG
ACCATGTCTGGGACATGGCATCAGCCTCGAC
Found at i:86855917 original size:30 final size:30
Alignment explanation
Indices: 86855881--86855940 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
86855871 AATGCTTATG
86855881 TTATTTTGTCATTGAATTGCCATGAATGCT
1 TTATTTTGTCATTGAATTGCCATGAATGCT
86855911 TTATTTTGTCATTGAATTGCCATGAATGCT
1 TTATTTTGTCATTGAATTGCCATGAATGCT
86855941 GAATGATTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.23, C:0.13, G:0.17, T:0.47
Consensus pattern (30 bp):
TTATTTTGTCATTGAATTGCCATGAATGCT
Found at i:86856128 original size:43 final size:43
Alignment explanation
Indices: 86856051--86856173 Score: 126
Period size: 43 Copynumber: 2.9 Consensus size: 43
86856041 ATTGGGATGT
* * * *
86856051 GATTACATGTAAGACCCTATATGGGACAGTGACATTG-TATTAC
1 GATTACGTGTAAGACCCTGTATGGGACAGTGACATCGTTAAT-C
*
86856094 GATTACGTGTAAGACCATGTATGGGACA-TCGACATCGTTAATC
1 GATTACGTGTAAGACCCTGTATGGGACAGT-GACATCGTTAATC
* * *
86856137 GAATT-CGTGTAAGACCCTGTGTGGGATAGTGGCATCG
1 G-ATTACGTGTAAGACCCTGTATGGGACAGTGACATCG
86856174 ATACGTGTTA
Statistics
Matches: 67, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
42 1 0.01
43 59 0.88
44 7 0.10
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (43 bp):
GATTACGTGTAAGACCCTGTATGGGACAGTGACATCGTTAATC
Found at i:86858862 original size:40 final size:39
Alignment explanation
Indices: 86858803--86858930 Score: 148
Period size: 40 Copynumber: 3.2 Consensus size: 39
86858793 CATTTGAATG
* *
86858803 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTG-TT
* * * *
86858843 TTATCCGGGTTAAGACCCGAAGGCATTTGTACGAGTTGCT
1 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCTAG-TGTT
* * *
86858883 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGT-GTT
86858923 ATATCCGG
1 ATATCCGG
86858931 CTAAATTCNN
Statistics
Matches: 72, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
39 1 0.01
40 69 0.96
41 2 0.03
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (39 bp):
ATATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGTT
Found at i:86859193 original size:22 final size:22
Alignment explanation
Indices: 86859153--86859194 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
86859143 GAATGTGCAT
*
86859153 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
86859175 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
86859195 TCGAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:86860982 original size:27 final size:28
Alignment explanation
Indices: 86860952--86861004 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
86860942 TATTTTATTT
86860952 ATATTAGGA-TAATTAATATTAAGATAA
1 ATATTAGGATTAATTAATATTAAGATAA
* *
86860979 ATATTAGGATTATTTAATTTTAAGAT
1 ATATTAGGATTAATTAATATTAAGAT
86861005 TTTATTTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 9 0.39
28 14 0.61
ACGTcount: A:0.45, C:0.00, G:0.11, T:0.43
Consensus pattern (28 bp):
ATATTAGGATTAATTAATATTAAGATAA
Found at i:86861010 original size:27 final size:26
Alignment explanation
Indices: 86860948--86861010 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
86860938 ATTTTATTTT
86860948 ATTTATATTAGGATAATTAATATTAAG
1 ATTT-TATTAGGATAATTAATATTAAG
** * *
86860975 ATAAATATTAGGATTATTTAATTTTAAG
1 AT-TTTATTAGGA-TAATTAATATTAAG
86861003 ATTTTATT
1 ATTTTATT
86861011 TTAATTATCT
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
27 14 0.50
28 14 0.50
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAG
Found at i:86861025 original size:10 final size:10
Alignment explanation
Indices: 86861006--86861037 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
86860996 TTTTAAGATT
86861006 TTAT-TTTAA
1 TTATCTTTAA
86861015 TTATCTTTAA
1 TTATCTTTAA
86861025 TTATCTTTAA
1 TTATCTTTAA
86861035 TTA
1 TTA
86861038 AATGTATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:86864741 original size:7 final size:7
Alignment explanation
Indices: 86864725--86864804 Score: 53
Period size: 7 Copynumber: 11.4 Consensus size: 7
86864715 CCAATCTTTC
86864725 TTTTTA-
1 TTTTTAT
86864731 TTTTTA-
1 TTTTTAT
86864737 TTTTTAT
1 TTTTTAT
86864744 TTTTT-T
1 TTTTTAT
86864750 TTTCCTT-T
1 TTT--TTAT
86864758 CTTTTTAT
1 -TTTTTAT
*
86864766 TTATTAT
1 TTTTTAT
*
86864773 TTATTAT
1 TTTTTAT
*
86864780 TTATTAT
1 TTTTTAT
86864787 TTTATT-T
1 TTT-TTAT
86864794 TATTTTAT
1 T-TTTTAT
86864802 TTT
1 TTT
86864805 AGTTAAATAT
Statistics
Matches: 64, Mismatches: 2, Indels: 15
0.79 0.02 0.19
Matches are distributed among these distances:
6 16 0.25
7 35 0.55
8 10 0.16
9 3 0.05
ACGTcount: A:0.16, C:0.04, G:0.00, T:0.80
Consensus pattern (7 bp):
TTTTTAT
Found at i:86865444 original size:245 final size:245
Alignment explanation
Indices: 86865014--86865503 Score: 980
Period size: 245 Copynumber: 2.0 Consensus size: 245
86865004 CCCATTTTCA
86865014 GAAAATAACACCCCCAAACCTTACATTTTTTTCCCCAAATTTCTCCATAACCGTCGACTCCTTTC
1 GAAAATAACACCCCCAAACCTTACATTTTTTTCCCCAAATTTCTCCATAACCGTCGACTCCTTTC
86865079 TCCTCCACCACCCACCGCCGATTTCTCAGCCACCATGGTGAGAACCCGAAACTGAACTACCGTTG
66 TCCTCCACCACCCACCGCCGATTTCTCAGCCACCATGGTGAGAACCCGAAACTGAACTACCGTTG
86865144 CACACGTCACCCACCCCGTCTCCACCTCTTGCCGCTTCGCCATCTTCTTCTCCACCGTATACGCC
131 CACACGTCACCCACCCCGTCTCCACCTCTTGCCGCTTCGCCATCTTCTTCTCCACCGTATACGCC
86865209 AACCGACGGTAACTACATGGGGAGTTTTTCTAAACTTTTTTTTCTCCACC
196 AACCGACGGTAACTACATGGGGAGTTTTTCTAAACTTTTTTTTCTCCACC
86865259 GAAAATAACACCCCCAAACCTTACATTTTTTTCCCCAAATTTCTCCATAACCGTCGACTCCTTTC
1 GAAAATAACACCCCCAAACCTTACATTTTTTTCCCCAAATTTCTCCATAACCGTCGACTCCTTTC
86865324 TCCTCCACCACCCACCGCCGATTTCTCAGCCACCATGGTGAGAACCCGAAACTGAACTACCGTTG
66 TCCTCCACCACCCACCGCCGATTTCTCAGCCACCATGGTGAGAACCCGAAACTGAACTACCGTTG
86865389 CACACGTCACCCACCCCGTCTCCACCTCTTGCCGCTTCGCCATCTTCTTCTCCACCGTATACGCC
131 CACACGTCACCCACCCCGTCTCCACCTCTTGCCGCTTCGCCATCTTCTTCTCCACCGTATACGCC
86865454 AACCGACGGTAACTACATGGGGAGTTTTTCTAAACTTTTTTTTCTCCACC
196 AACCGACGGTAACTACATGGGGAGTTTTTCTAAACTTTTTTTTCTCCACC
86865504 TATTTGTTTT
Statistics
Matches: 245, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
245 245 1.00
ACGTcount: A:0.23, C:0.38, G:0.12, T:0.27
Consensus pattern (245 bp):
GAAAATAACACCCCCAAACCTTACATTTTTTTCCCCAAATTTCTCCATAACCGTCGACTCCTTTC
TCCTCCACCACCCACCGCCGATTTCTCAGCCACCATGGTGAGAACCCGAAACTGAACTACCGTTG
CACACGTCACCCACCCCGTCTCCACCTCTTGCCGCTTCGCCATCTTCTTCTCCACCGTATACGCC
AACCGACGGTAACTACATGGGGAGTTTTTCTAAACTTTTTTTTCTCCACC
Found at i:86866341 original size:118 final size:118
Alignment explanation
Indices: 86866002--86866322 Score: 572
Period size: 118 Copynumber: 2.7 Consensus size: 118
86865992 TGTTTTCCAT
* * *
86866002 GGTTATGAGTACAGCTTAGATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
1 GGTTATGAGTATAGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
86866067 CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAGCCGA
66 CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAGCCGA
*
86866120 GGTTATGAGTATGGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
1 GGTTATGAGTATAGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
*
86866185 CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCGGCTAGCCGA
66 CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAGCCGA
86866238 GGTTATGAGTATAGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATC
1 GGTTATGAGTATAGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCAT-
*
86866303 TCT-CTTCGTGTCAAAAGGTT
65 TCTACTTCGCGTCAAAAGGTT
86866323 TAATATATTC
Statistics
Matches: 195, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
118 192 0.98
119 3 0.02
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (118 bp):
GGTTATGAGTATAGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAGCCGA
Found at i:86866374 original size:9 final size:9
Alignment explanation
Indices: 86866360--86866393 Score: 50
Period size: 9 Copynumber: 3.6 Consensus size: 9
86866350 AATAAATTTT
86866360 AAAAAAAAG
1 AAAAAAAAG
86866369 AAAAAAAAAAG
1 --AAAAAAAAG
86866380 AAAAAAAAG
1 AAAAAAAAG
86866389 AAAAA
1 AAAAA
86866394 GAAAAAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 14 0.61
11 9 0.39
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:86866376 original size:11 final size:11
Alignment explanation
Indices: 86866360--86866399 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
86866350 AATAAATTTT
86866360 AAAAAAAAGAA
1 AAAAAAAAGAA
86866371 AAAAAAAAG--
1 AAAAAAAAGAA
86866380 AAAAAAAAGAA
1 AAAAAAAAGAA
86866391 AAAGAAAAA
1 AAA-AAAAA
86866400 ATAAGTACTA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
9 9 0.35
11 12 0.46
12 5 0.19
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (11 bp):
AAAAAAAAGAA
Found at i:86866385 original size:20 final size:21
Alignment explanation
Indices: 86866360--86866399 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
86866350 AATAAATTTT
86866360 AAAAAAAAGAAAAA-AAAAAG
1 AAAAAAAAGAAAAAGAAAAAG
86866380 AAAAAAAAGAAAAAGAAAAA
1 AAAAAAAAGAAAAAGAAAAA
86866400 ATAAGTACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (21 bp):
AAAAAAAAGAAAAAGAAAAAG
Found at i:86866387 original size:15 final size:15
Alignment explanation
Indices: 86866360--86866400 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
86866350 AATAAATTTT
*
86866360 AAAAA-AAAGAAAAA
1 AAAAAGAAAAAAAAA
*
86866374 AAAAAGAAAAAAAAG
1 AAAAAGAAAAAAAAA
86866389 AAAAAGAAAAAA
1 AAAAAGAAAAAA
86866401 TAAGTACTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 5 0.21
15 19 0.79
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAAAAAAA
Found at i:86874639 original size:21 final size:21
Alignment explanation
Indices: 86874579--86874637 Score: 102
Period size: 21 Copynumber: 2.9 Consensus size: 21
86874569 GTTAAGAAGA
86874579 CACACGGGCGTGTCGCCCTTC
1 CACACGGGCGTGTCGCCCTTC
86874600 CACACGGGCGTGTCGCCCTTC
1 CACACGGGCGTGTCGCCCTTC
*
86874621 CACACGGGCATGT-GCCC
1 CACACGGGCGTGTCGCCC
86874638 CTGTCTGCCT
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
20 4 0.11
21 33 0.89
ACGTcount: A:0.12, C:0.42, G:0.29, T:0.17
Consensus pattern (21 bp):
CACACGGGCGTGTCGCCCTTC
Found at i:86875146 original size:153 final size:153
Alignment explanation
Indices: 86874868--86876097 Score: 1187
Period size: 153 Copynumber: 8.1 Consensus size: 153
86874858 GGGTGTTACA
* * *
86874868 AAAATCAAGATTAATGTGCTACTAATATTCATCTTTGAG-AACTTATAGCTTAACTCGATCGATA
1 AAAATCAAGATTAATGTGCTGCTAATATGCGTCTTTGAGAAAC-TATAGCTTAACTCGATCGATA
*
86874932 CATGCAACTAGCTAGTAAATATAGTAGTTGGACTTCCCCTTAATCTC-AATGTATTACCTCTTTT
65 CATGCAACTAGCTAATAAATATAGTAGTTGGACTTCCCCTTAATCTCAAAT-TATTACCTCTTTT
* *
86874996 ATTAAAAATATAAAACATCACCCAC
129 ATTAAAAATATAAACCATCACCGAC
* * * * * * * * *
86875021 AAAATCAATATTAATGTACTACTAGTATGTGCCTTTGAGAAACTATAGTTTAACTTGATCGATCC
1 AAAATCAAGATTAATGTGCTGCTAATATGCGTCTTTGAGAAACTATAGCTTAACTCGATCGATAC
* **
86875086 ATGTATTTAGCTAATAAATATAGTAGTTGGACTTCCCCTTAATCTCAAATTATTACCTCTTTTAT
66 ATGCAACTAGCTAATAAATATAGTAGTTGGACTTCCCCTTAATCTCAAATTATTACCTCTTTTAT
*
86875151 TAAAAATATAAACCATTGA-CGAC
131 TAAAAATATAAACCA-TCACCGAC
* * * * * *
86875174 AAAAATCAAAATTAATGTACTGCTAATATGCATCTTTAAG-AACTTATAACTTAACTCGACCGAT
1 -AAAATCAAGATTAATGTGCTGCTAATATGCGTCTTTGAGAAAC-TATAGCTTAACTCGATCGAT
* * * *
86875238 CCATGCATCTAGCTAATAAATATAGTAGTTGAACTTCCCCTTAATCTCAAATTGTTACCTCTTTT
64 ACATGCAACTAGCTAATAAATATAGTAGTTGGACTTCCCCTTAATCTCAAATTATTACCTCTTTT
* *
86875303 ATTAAAAAAATAAATCATCACCGAC
129 ATTAAAAATATAAACCATCACCGAC
* * * *
86875328 AAAATCAATATTAAGGTGTTGCTAATATGCGTCTTTGAGAACCTATAGCTTAACTCGATCGATAC
1 AAAATCAAGATTAATGTGCTGCTAATATGCGTCTTTGAGAAACTATAGCTTAACTCGATCGATAC
* * * ** * *
86875393 ATGTAGCTAGCTAATAAATATAGCAGTTGGACTTCCTATTAATCTTAAAGTATTACCTCTTTTAT
66 ATGCAACTAGCTAATAAATATAGTAGTTGGACTTCCCCTTAATCTCAAATTATTACCTCTTTTAT
* * *
86875458 TAAAAATATAAACCATCGCAGTC
131 TAAAAATATAAACCATCACCGAC
* ** * * *
86875481 AAAATCAAGATTAATGTGCTGCTAATATGCGTATTTGAGAATGTACAGCTTAACTCAATCGATTC
1 AAAATCAAGATTAATGTGCTGCTAATATGCGTCTTTGAGAAACTATAGCTTAACTCGATCGATAC
86875546 ATGCAACTAGCTAATAAATATAGTAGTTGGACTTCCCCTTAATCTCAAATTATTACCTCTTTTAT
66 ATGCAACTAGCTAATAAATATAGTAGTTGGACTTCCCCTTAATCTCAAATTATTACCTCTTTTAT
* * *
86875611 TAAAAATATAAACCATCGTCGAGAA
131 TAAAAATATAAACCATC-AC-CGAC
* * * * ** * * *
86875636 AAAATCAAGACTAATATGCTGCTAAT-GGTCGTGTTTGAGAATTTAT-GTTTTAAATCGATCAAT
1 AAAATCAAGATTAATGTGCTGCTAATATG-CGTCTTTGAGAAACTATAG-CTTAACTCGATCGAT
* * * * * * * * *
86875699 TCTTACAACTA-CTTAATAAATA-ATGCAATTGAACTTCCCCTTAATATGAAATTATTACCTTTT
64 ACATGCAACTAGC-TAATAAATATA-GTAGTTGGACTTCCCCTTAATCTCAAATTATTACCTCTT
* * * *
86875762 TTA-AAAAAATATAAACTATCGCCGTC
127 TTATTAAAAATATAAACCATCACCGAC
* * * *
86875788 AAAATTAAGATTAATGTGCTGCTAATATGCGTCTTTGAGAAATTATAACTTAACTCGATCGATTC
1 AAAATCAAGATTAATGTGCTGCTAATATGCGTCTTTGAGAAACTATAGCTTAACTCGATCGATAC
86875853 ATGCAACTAGCTAATAAATATAGCT-GTTGGACTT-CCCTTAATCTC--------ACCTCTTTTA
66 ATGCAACTAGCTAATAAATATAG-TAGTTGGACTTCCCCTTAATCTCAAATTATTACCTCTTTTA
*
86875908 TTAAAAATATAAACCATCCCCGAC
130 TTAAAAATATAAACCATCACCGAC
* * * * * * ** * * *
86875932 AAATTCAATATCAATGTGTTGCAAATGTTTGTGTTTGAG-AACTTATAGTTTAACTCGATCCAT-
1 AAAATCAAGATTAATGTGCTGCTAATATGCGTCTTTGAGAAAC-TATAGCTTAACTCGATCGATA
** * * ** * * * ** *
86875995 --TGTGACTACCTAATAAGTATA-TCTTTTGAACCACTCCACTTAATCTCAAATTACGACTTC-T
65 CATGCAACTAGCTAATAAATATAGT-AGTTGGA-C-TTCCCCTTAATCTCAAATTATTACCTCTT
* *
86876056 TTATTAAAAATATAAACTATCACCGGC
127 TTATTAAAAATATAAACCATCACCGAC
86876083 AAAATCAAGATTAAT
1 AAAATCAAGATTAAT
86876098 ATGCAACTAA
Statistics
Matches: 891, Mismatches: 153, Indels: 68
0.80 0.14 0.06
Matches are distributed among these distances:
139 1 0.00
141 21 0.02
142 1 0.00
143 12 0.01
144 75 0.08
151 46 0.05
152 81 0.09
153 391 0.44
154 158 0.18
155 105 0.12
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.34
Consensus pattern (153 bp):
AAAATCAAGATTAATGTGCTGCTAATATGCGTCTTTGAGAAACTATAGCTTAACTCGATCGATAC
ATGCAACTAGCTAATAAATATAGTAGTTGGACTTCCCCTTAATCTCAAATTATTACCTCTTTTAT
TAAAAATATAAACCATCACCGAC
Found at i:86875423 original size:307 final size:304
Alignment explanation
Indices: 86874868--86876135 Score: 1314
Period size: 307 Copynumber: 4.2 Consensus size: 304
86874858 GGGTGTTACA
* * * *
86874868 AAAATCAAGATTAATGTGCTACTAATATTCATCTTTGAGAACTTATAGCTTAACTCGATCGATAC
1 AAAATCAAGATTAATGTGCTGCTAATATGCATCTTTGAGAACTTATAACTTAACTCGATCGATTC
*
86874933 ATGCAACTAGCTAGTAAATATAGTAGTTGGACTTCCCCTTAATCTCAATGTATTACCTCTTTTAT
66 ATGCAACTAGCTAATAAATATAGTAGTTGGACTTCCCCTTAATCTCAAT-TATTACCTCTTTTAT
* * * * * * * *
86874998 TAAAAATATAAAACATCACCCACAAAATCAATATTAATGTACTACTAGTATGTGCCTTTGAGAAA
130 TAAAAATATAAACCATCACCGACAAAATCAATATTAATGTGCTGCTAATATGCGTCTTTGAGAAC
* * ** *
86875063 CTATAGTTTAACTTGATCGATCCATGTATTTAGCTAATAAATATAGTAGTTGGACTTCCCCTTAA
195 CTATAGTTTAACTCGATCGATACATGTAACTAGCTAATAAATATAGCAGTTGGACTTCCCCTTAA
*
86875128 TCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATTGACGAC
260 TCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCG-CGAC
* * * * *
86875174 AAAAATCAAAATTAATGTACTGCTAATATGCATCTTTAAGAACTTATAACTTAACTCGACCGATC
1 -AAAATCAAGATTAATGTGCTGCTAATATGCATCTTTGAGAACTTATAACTTAACTCGATCGATT
* * *
86875239 CATGCATCTAGCTAATAAATATAGTAGTTGAACTTCCCCTTAATCTCAAATTGTTACCTCTTTTA
65 CATGCAACTAGCTAATAAATATAGTAGTTGGACTTCCCCTTAATCTC-AATTATTACCTCTTTTA
* * * *
86875304 TTAAAAAAATAAATCATCACCGACAAAATCAATATTAAGGTGTTGCTAATATGCGTCTTTGAGAA
129 TTAAAAATATAAACCATCACCGACAAAATCAATATTAATGTGCTGCTAATATGCGTCTTTGAGAA
* * **
86875369 CCTATAGCTTAACTCGATCGATACATGTAGCTAGCTAATAAATATAGCAGTTGGACTTCCTATTA
194 CCTATAGTTTAACTCGATCGATACATGTAACTAGCTAATAAATATAGCAGTTGGACTTCCCCTTA
* * *
86875434 ATCTTAAAGTATTACCTCTTTTATTAAAAATATAAACCATCGCAGTC
259 ATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCGC-GAC
* * * * *
86875481 AAAATCAAGATTAATGTGCTGCTAATATGCGTATTTGAGAA-TGTACAGCTTAACTCAATCGATT
1 AAAATCAAGATTAATGTGCTGCTAATATGCATCTTTGAGAACT-TATAACTTAACTCGATCGATT
86875545 CATGCAACTAGCTAATAAATATAGTAGTTGGACTTCCCCTTAATCTCAAATTATTACCTCTTTTA
65 CATGCAACTAGCTAATAAATATAGTAGTTGGACTTCCCCTTAATCTC-AATTATTACCTCTTTTA
* * * * * * * *
86875610 TTAAAAATATAAACCATCGTCGAGAAAAAATCAAGACTAATATGCTGCTAAT-GGTCGTGTTTGA
129 TTAAAAATATAAACCATC-AC-CGACAAAATCAATATTAATGTGCTGCTAATATG-CGTCTTTGA
** * * * * ** * *
86875674 GAATTTAT-GTTTTAAATCGATCAATTCTTACAACTA-CTTAATAAATA-ATGCAATTGAACTTC
191 GAACCTATAG-TTTAACTCGATCGATACATGTAACTAGC-TAATAAATATA-GCAGTTGGACTTC
* * * * * *
86875736 CCCTTAATATGAAATTATTACCTTTTTTA-AAAAAATATAAACTATCGCCGTC
253 CCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCG-CGAC
* * *
86875788 AAAATTAAGATTAATGTGCTGCTAATATGCGTCTTTGAGAAATTATAACTTAACTCGATCGATTC
1 AAAATCAAGATTAATGTGCTGCTAATATGCATCTTTGAGAACTTATAACTTAACTCGATCGATTC
86875853 ATGCAACTAGCTAATAAATATAGCT-GTTGGACTT-CCCTTAATCTC-------ACCTCTTTTAT
66 ATGCAACTAGCTAATAAATATAG-TAGTTGGACTTCCCCTTAATCTCAATTATTACCTCTTTTAT
* * * * * * ** *
86875909 TAAAAATATAAACCATCCCCGACAAATTCAATATCAATGTGTTGCAAATGTTTGTGTTTGAGAAC
130 TAAAAATATAAACCATCACCGACAAAATCAATATTAATGTGCTGCTAATATGCGTCTTTGAGAAC
* * * * * * ** * * *
86875974 TTATAGTTTAACTCGATCCAT---TGTGACTACCTAATAAGTATATCTTTTGAACCACTCCACTT
195 CTATAGTTTAACTCGATCGATACATGTAACTAGCTAATAAATATAGCAGTTGGA-C-TTCCCCTT
** * * * *
86876036 AATCTCAAATTACGACTTC-TTTATTAAAAATATAAACTATCACCGGC
258 AATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATC-GCGAC
* ** * * * *
86876083 AAAATCAAGATTAATATGCAACTAATATTCATCTTTAAAAACTTATAATTTAA
1 AAAATCAAGATTAATGTGCTGCTAATATGCATCTTTGAGAACTTATAACTTAA
86876136 TTTAATAACG
Statistics
Matches: 812, Mismatches: 129, Indels: 52
0.82 0.13 0.05
Matches are distributed among these distances:
293 19 0.02
294 7 0.01
295 81 0.10
296 49 0.06
297 2 0.00
298 28 0.03
305 1 0.00
306 142 0.17
307 379 0.47
308 104 0.13
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.34
Consensus pattern (304 bp):
AAAATCAAGATTAATGTGCTGCTAATATGCATCTTTGAGAACTTATAACTTAACTCGATCGATTC
ATGCAACTAGCTAATAAATATAGTAGTTGGACTTCCCCTTAATCTCAATTATTACCTCTTTTATT
AAAAATATAAACCATCACCGACAAAATCAATATTAATGTGCTGCTAATATGCGTCTTTGAGAACC
TATAGTTTAACTCGATCGATACATGTAACTAGCTAATAAATATAGCAGTTGGACTTCCCCTTAAT
CTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCGCGAC
Found at i:86875813 original size:460 final size:459
Alignment explanation
Indices: 86874868--86875898 Score: 1309
Period size: 460 Copynumber: 2.2 Consensus size: 459
86874858 GGGTGTTACA
* * *
86874868 AAAATCAAGATTAATGTGCTACTAATATTCATCTTTGAGAACTTATAGCTTAACTCGATCGATAC
1 AAAATCAAGATTAATGTGCTGCTAATATGCGTCTTTGAGAACTTATAGCTTAACTCGATCGATAC
* * *
86874933 ATGCAACTAGCTAGTAAATATAGTAGTTGGACTTCCCCTTAATCTCAATGTATTACCTCTTTTAT
66 ATGCAACTAGCTAATAAATATAGCAGTTGGACTT-CCCTTAATCTCAAAGTATTACCTCTTTTAT
* * * * *
86874998 TAAAAATATAAAACATCACCCACAAAATCAATATTAATGTACTACTAGTATGTGCCTTTGAGAAA
130 TAAAAATATAAAACATCACACACAAAATCAAGATTAATGTACTACTAATATGCGCATTTGAGAAA
* * ** * **
86875063 CTATAGTTTAACTTGATCGATCCATGTATTTAGCTAATAAATATAGTAGTTGGACTTCCCCTTAA
195 CTACAGCTTAACTCAATCGATCCATGCAACTAGCTAATAAATATAGTAGTTGGACTTCCCCTTAA
* * * *
86875128 TCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATTGACGACAAAAATCAAAATTAATGTA
260 TCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCGACGAAAAAAATCAAAACTAATATA
* * * *
86875193 CTGCTAATATGCATCTTTAAGAACTTATAACTTAACTCGACCGATCCATGCATCTAGCTAATAAA
325 CTGCTAATATGCATCTTTAAGAACTTATAACTTAAATCGACCAATCCATACAACTAGCTAATAAA
* * * * *
86875258 TATAGTAGTTGAACTTCCCCTTAATCTCAAATTGTTACCTCTTTTATTAAAAAAATAAATCATCA
390 TATAGCAATTGAACTTCCCCTTAATATCAAATTATTACCTCTTTTATAAAAAAAATAAATCATCA
86875323 CCGAC
455 CCGAC
* * * *
86875328 AAAATCAATATTAAGGTGTTGCTAATATGCGTCTTTGAGAACCTATAGCTTAACTCGATCGATAC
1 AAAATCAAGATTAATGTGCTGCTAATATGCGTCTTTGAGAACTTATAGCTTAACTCGATCGATAC
* * * *
86875393 ATGTAGCTAGCTAATAAATATAGCAGTTGGACTTCCTATTAATCTTAAAGTATTACCTCTTTTAT
66 ATGCAACTAGCTAATAAATATAGCAGTTGGACTTCC-CTTAATCTCAAAGTATTACCTCTTTTAT
* * ** * * * *
86875458 TAAAAATATAAACCATCGCAGTCAAAATCAAGATTAATGTGCTGCTAATATGCGTATTTGAGAAT
130 TAAAAATATAAAACATCACACACAAAATCAAGATTAATGTACTACTAATATGCGCATTTGAGAAA
* *
86875523 GTACAGCTTAACTCAATCGATTCATGCAACTAGCTAATAAATATAGTAGTTGGACTTCCCCTTAA
195 CTACAGCTTAACTCAATCGATCCATGCAACTAGCTAATAAATATAGTAGTTGGACTTCCCCTTAA
* *
86875588 TCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCGTCGAGAAAAAATCAAGACTAATAT
260 TCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCGACGA-AAAAAATCAAAACTAATAT
* * * * * * *** * * *
86875653 GCTGCTAAT-GGTCGTGTTTGAGAATTTATGTTTTAAATCGATCAATTCTTACAACTA-CTTAAT
324 ACTGCTAATATG-CATCTTTAAGAACTTATAACTTAAATCGACCAATCCATACAACTAGC-TAAT
*
86875716 AAATA-ATGCAATTGAACTTCCCCTTAATATGAAATTATTACCT-TTTT-TAAAAAAATATAAA-
387 AAATATA-GCAATTGAACTTCCCCTTAATATCAAATTATTACCTCTTTTATAAAAAAA-ATAAAT
* *
86875777 CTATCGCCGTC
450 C-ATCACCGAC
* * * *
86875788 AAAATTAAGATTAATGTGCTGCTAATATGCGTCTTTGAGAAATTATAACTTAACTCGATCGATTC
1 AAAATCAAGATTAATGTGCTGCTAATATGCGTCTTTGAGAACTTATAGCTTAACTCGATCGATAC
*
86875853 ATGCAACTAGCTAATAAATATAGCTGTTGGACTTCCCTTAATCTCA
66 ATGCAACTAGCTAATAAATATAGCAGTTGGACTTCCCTTAATCTCA
86875899 CCTCTTTTAT
Statistics
Matches: 485, Mismatches: 79, Indels: 15
0.84 0.14 0.03
Matches are distributed among these distances:
459 18 0.04
460 373 0.77
461 94 0.19
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.34
Consensus pattern (459 bp):
AAAATCAAGATTAATGTGCTGCTAATATGCGTCTTTGAGAACTTATAGCTTAACTCGATCGATAC
ATGCAACTAGCTAATAAATATAGCAGTTGGACTTCCCTTAATCTCAAAGTATTACCTCTTTTATT
AAAAATATAAAACATCACACACAAAATCAAGATTAATGTACTACTAATATGCGCATTTGAGAAAC
TACAGCTTAACTCAATCGATCCATGCAACTAGCTAATAAATATAGTAGTTGGACTTCCCCTTAAT
CTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCGACGAAAAAAATCAAAACTAATATAC
TGCTAATATGCATCTTTAAGAACTTATAACTTAAATCGACCAATCCATACAACTAGCTAATAAAT
ATAGCAATTGAACTTCCCCTTAATATCAAATTATTACCTCTTTTATAAAAAAAATAAATCATCAC
CGAC
Found at i:86881056 original size:132 final size:129
Alignment explanation
Indices: 86880795--86881058 Score: 406
Period size: 132 Copynumber: 2.0 Consensus size: 129
86880785 GTTATTGAAT
86880795 TCATTGAGTCGAATCAATAATCAGATAACTTTTATCGTTTATATCTTCATTTATATAACACTTAC
1 TCATTGAGTCGAATCAATAATCAGATAACTTTTATCGTTTATATCTTCATTTATATAACACTTAC
86880860 ATGTGATTTTTTTATCTAAGTATTTTTGTCATTTATACCTTAATTTATTATAACATTTACATGTG
66 ATGTGATTTTTTTATCTAAGTATTTTTG--ATTTATACCTTAATTTATTATAACATTTACATGTG
86880925 A
129 A
86880926 TCATTGAGTC-ACATCAATAATCAGATAACTTTTATCGTTTATATCTTCATTTATTATAACACTT
1 TCATTGAGTCGA-ATCAATAATCAGATAACTTTTATCGTTTATATCTTCATTTA-TATAACACTT
** * * *
86880990 ATGTGTGATTTTTTTATCTGAACATTATTTTTG-TTTATACCTTAATTTCTTATAACATTTATAT
64 ACATGTGATTTTTTTATCT--A-AGTATTTTTGATTTATACCTTAATTTATTATAACATTTACAT
86881054 GTGA
126 GTGA
86881058 T
1 T
86881059 ATTTTTACCT
Statistics
Matches: 123, Mismatches: 5, Indels: 9
0.90 0.04 0.07
Matches are distributed among these distances:
130 1 0.01
131 51 0.41
132 61 0.50
134 1 0.01
135 9 0.07
ACGTcount: A:0.30, C:0.13, G:0.08, T:0.48
Consensus pattern (129 bp):
TCATTGAGTCGAATCAATAATCAGATAACTTTTATCGTTTATATCTTCATTTATATAACACTTAC
ATGTGATTTTTTTATCTAAGTATTTTTGATTTATACCTTAATTTATTATAACATTTACATGTGA
Found at i:86884443 original size:23 final size:23
Alignment explanation
Indices: 86884412--86884461 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
86884402 TCTAAACTCA
**
86884412 AAAACCTTAAACCTAAAAGTATT
1 AAAACCTTAAACCTAAAAACATT
*
86884435 AAAATCTTAAACCTAAAAACATT
1 AAAACCTTAAACCTAAAAACATT
86884458 AAAA
1 AAAA
86884462 ACCCTAACCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.58, C:0.16, G:0.02, T:0.24
Consensus pattern (23 bp):
AAAACCTTAAACCTAAAAACATT
Found at i:86891983 original size:16 final size:16
Alignment explanation
Indices: 86891956--86892005 Score: 84
Period size: 16 Copynumber: 3.2 Consensus size: 16
86891946 ACTGCCGGGT
86891956 CGGGCC-GGTTCAGGC
1 CGGGCCGGGTTCAGGC
86891971 CGGGCCGGGTTCAGGC
1 CGGGCCGGGTTCAGGC
*
86891987 CGGGGCGGGTTCAGGC
1 CGGGCCGGGTTCAGGC
86892003 CGG
1 CGG
86892006 TACGAGCTGG
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
15 6 0.18
16 27 0.82
ACGTcount: A:0.06, C:0.30, G:0.52, T:0.12
Consensus pattern (16 bp):
CGGGCCGGGTTCAGGC
Found at i:86892169 original size:12 final size:12
Alignment explanation
Indices: 86892152--86892186 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
86892142 CTAACCCGTC
86892152 TATATTAATTTT
1 TATATTAATTTT
*
86892164 TATATTATTTTT
1 TATATTAATTTT
86892176 TATA-TAATTTT
1 TATATTAATTTT
86892187 AAAATATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 6 0.29
12 15 0.71
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
TATATTAATTTT
Found at i:86892210 original size:18 final size:18
Alignment explanation
Indices: 86892187--86892224 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
86892177 ATATAATTTT
*
86892187 AAAATA-TATAAACCATCA
1 AAAATACTA-AAAACATCA
86892205 AAAATACTAAAAACATCA
1 AAAATACTAAAAACATCA
86892223 AA
1 AA
86892225 TAAATATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 16 0.89
19 2 0.11
ACGTcount: A:0.66, C:0.16, G:0.00, T:0.18
Consensus pattern (18 bp):
AAAATACTAAAAACATCA
Found at i:86892366 original size:19 final size:21
Alignment explanation
Indices: 86892323--86892367 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
86892313 TTTCTAAAAT
**
86892323 AATAACAAAATTAACAAATCT
1 AATAACAAAATTAACAAATAA
86892344 AATAA-AAAATTAAC-AATAA
1 AATAACAAAATTAACAAATAA
86892363 AATAA
1 AATAA
86892368 GTTTTATACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 8 0.36
20 9 0.41
21 5 0.23
ACGTcount: A:0.69, C:0.09, G:0.00, T:0.22
Consensus pattern (21 bp):
AATAACAAAATTAACAAATAA
Found at i:86892436 original size:11 final size:11
Alignment explanation
Indices: 86892396--86892435 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
86892386 ATAATAACAA
86892396 CAAAATAATAG
1 CAAAATAATAG
*
86892407 CAACATAATAG
1 CAAAATAATAG
* *
86892418 TAAAATAGTAG
1 CAAAATAATAG
86892429 CAAAATA
1 CAAAATA
86892436 GGGAGAAAAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.60, C:0.10, G:0.10, T:0.20
Consensus pattern (11 bp):
CAAAATAATAG
Found at i:86896549 original size:21 final size:19
Alignment explanation
Indices: 86896523--86896565 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
86896513 AGTGATTACG
*
86896523 TGTGTAAATTTAATATACATA
1 TGTGTAAA-TTAATA-AAATA
*
86896544 TGTGTATATTAATAAAATA
1 TGTGTAAATTAATAAAATA
86896563 TGT
1 TGT
86896566 TTACGTATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 7 0.35
20 6 0.30
21 7 0.35
ACGTcount: A:0.42, C:0.02, G:0.12, T:0.44
Consensus pattern (19 bp):
TGTGTAAATTAATAAAATA
Found at i:86905977 original size:21 final size:20
Alignment explanation
Indices: 86905911--86905977 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 20
86905901 AGTCAACTCA
*
86905911 TATGAGTTTCAGATTAACCCT
1 TATGAGTTTC-GTTTAACCCT
* * *
86905932 TATGGGTTTCCGTTCAGCTCC-
1 TATGAGTTT-CGTTTAAC-CCT
86905953 TATGAGCTTTCGTTTAACCCT
1 TATGAG-TTTCGTTTAACCCT
86905974 TATG
1 TATG
86905978 GGTTCCCGTT
Statistics
Matches: 35, Mismatches: 7, Indels: 8
0.70 0.14 0.16
Matches are distributed among these distances:
20 2 0.06
21 27 0.77
22 6 0.17
ACGTcount: A:0.19, C:0.22, G:0.18, T:0.40
Consensus pattern (20 bp):
TATGAGTTTCGTTTAACCCT
Found at i:86905987 original size:21 final size:20
Alignment explanation
Indices: 86905924--86905989 Score: 53
Period size: 21 Copynumber: 3.1 Consensus size: 20
86905914 GAGTTTCAGA
86905924 TTAACCCTTATGGGTTTCCGT
1 TTAACCCTTATGGG-TTCCGT
* * * *
86905945 TCAGCTCC-TATGAGCTTTCGT
1 TTAAC-CCTTATG-GGTTCCGT
86905966 TTAACCCTTATGGGTTCCCGT
1 TTAACCCTTATGGGTT-CCGT
86905987 TTA
1 TTA
86905990 GCACTTATGT
Statistics
Matches: 33, Mismatches: 8, Indels: 8
0.67 0.16 0.16
Matches are distributed among these distances:
20 5 0.15
21 25 0.76
22 3 0.09
ACGTcount: A:0.15, C:0.26, G:0.18, T:0.41
Consensus pattern (20 bp):
TTAACCCTTATGGGTTCCGT
Found at i:86909817 original size:27 final size:28
Alignment explanation
Indices: 86909708--86909830 Score: 158
Period size: 28 Copynumber: 4.4 Consensus size: 28
86909698 GAGATTGGCG
* * * *
86909708 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
86909737 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
86909765 CTAAGTGTGCGAGTTTGATTACATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
86909793 CTAAGTGTACGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
86909820 CTGAGTGTGCG
1 CTAAGTGTGCG
86909831 GACTTAATAG
Statistics
Matches: 83, Mismatches: 11, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
27 22 0.27
28 46 0.55
29 15 0.18
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:86910688 original size:25 final size:25
Alignment explanation
Indices: 86910660--86910711 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 25
86910650 AAGATTAATT
*
86910660 TGAATATTTGATATTGCCTAATAAA
1 TGAATATCTGATATTGCCTAATAAA
* *
86910685 TGAATATCTGATATTGCTTAGTAAA
1 TGAATATCTGATATTGCCTAATAAA
86910710 TG
1 TG
86910712 TCAAGCCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.37, C:0.08, G:0.15, T:0.40
Consensus pattern (25 bp):
TGAATATCTGATATTGCCTAATAAA
Found at i:86911366 original size:18 final size:18
Alignment explanation
Indices: 86911340--86911382 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
86911330 AAAAGTTATT
*
86911340 TTTACATATATTAATAAA
1 TTTATATATATTAATAAA
86911358 TTTATATATATTAATAAA
1 TTTATATATATTAATAAA
86911376 TTTATAT
1 TTTATAT
86911383 TTTAAATTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTATATATATTAATAAA
Found at i:86911390 original size:13 final size:13
Alignment explanation
Indices: 86911372--86911416 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
86911362 TATATATTAA
86911372 TAAATTTATATTT
1 TAAATTTATATTT
86911385 TAAATTT-T-TTT
1 TAAATTTATATTT
86911396 AATAAATTTATATTT
1 --TAAATTTATATTT
86911411 TAAATT
1 TAAATT
86911417 GTTTTTACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
11 3 0.11
12 1 0.04
13 20 0.71
14 1 0.04
15 3 0.11
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TAAATTTATATTT
Found at i:86911397 original size:26 final size:27
Alignment explanation
Indices: 86911368--86911432 Score: 105
Period size: 26 Copynumber: 2.4 Consensus size: 27
86911358 TTTATATATA
86911368 TTAATAAATTTATATTTTAAATT-TTT
1 TTAATAAATTTATATTTTAAATTGTTT
86911394 TTAATAAATTTATATTTTAAATTGTTT
1 TTAATAAATTTATATTTTAAATTGTTT
*
86911421 TTACATATATTT
1 TTA-ATAAATTT
86911433 CAATGATTTA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
26 23 0.64
27 6 0.17
28 7 0.19
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (27 bp):
TTAATAAATTTATATTTTAAATTGTTT
Found at i:86916357 original size:23 final size:23
Alignment explanation
Indices: 86916326--86916415 Score: 78
Period size: 23 Copynumber: 4.0 Consensus size: 23
86916316 GGCTTTGCCG
*
86916326 ATCAAGCACTTTATGTGTCATAT
1 ATCAGGCACTTTATGTGTCATAT
*
86916349 ATCAGGCACTTTATGTGTCGTAT
1 ATCAGGCACTTTATGTGTCATAT
* * * **
86916372 TTTAGGCACCTCGTGTGTCAT-T
1 ATCAGGCACTTTATGTGTCATAT
* *
86916394 -TTAGGCAC-TTATGTGTCGTAT
1 ATCAGGCACTTTATGTGTCATAT
86916415 A
1 A
86916416 CTAATCATGT
Statistics
Matches: 54, Mismatches: 11, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
20 8 0.15
21 9 0.17
22 1 0.02
23 36 0.67
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.40
Consensus pattern (23 bp):
ATCAGGCACTTTATGTGTCATAT
Found at i:86920470 original size:25 final size:25
Alignment explanation
Indices: 86920441--86920491 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
86920431 AAGAATAATT
* *
86920441 TGAATATTTGATATTGCCTAATAAA
1 TGAATATCTAATATTGCCTAATAAA
* *
86920466 TGAATATCTAATATTGCTTAGTAAA
1 TGAATATCTAATATTGCCTAATAAA
86920491 T
1 T
86920492 ATCAAGCCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.39, C:0.08, G:0.12, T:0.41
Consensus pattern (25 bp):
TGAATATCTAATATTGCCTAATAAA
Found at i:86921137 original size:10 final size:10
Alignment explanation
Indices: 86921122--86921149 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
86921112 ATATTACATG
86921122 TTTACTTTGT
1 TTTACTTTGT
86921132 TTTACTTTGT
1 TTTACTTTGT
86921142 TTTACTTT
1 TTTACTTT
86921150 TTCCCCTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.11, C:0.11, G:0.07, T:0.71
Consensus pattern (10 bp):
TTTACTTTGT
Found at i:86923891 original size:38 final size:38
Alignment explanation
Indices: 86923848--86923973 Score: 144
Period size: 38 Copynumber: 3.3 Consensus size: 38
86923838 GAAGGCCCGA
* * * *
86923848 ATATAATACCAGCACTAGGCCTGCGGGATTTATCCTAG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
* *
86923886 ATATAATACCAGCACGAAGCCTACGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
** * *
86923924 ATATTTTACCAGCACGAAGCCTGCGGGTCTTTAAGCCCGG
1 ATATAATACCAGCACGAAGCCTGCGGG-ATTTAA-CCCAG
86923964 ATATAATACC
1 ATATAATACC
86923974 NNNNNNNNNN
Statistics
Matches: 74, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
38 56 0.76
39 5 0.07
40 13 0.18
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
Found at i:86930080 original size:25 final size:25
Alignment explanation
Indices: 86930051--86930099 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
86930041 AAAAAAGTAT
*
86930051 TTTTTATAAATTTTATATTTTAAATA
1 TTTTAATAAATTTTA-ATTTTAAATA
*
86930077 TTTTAATAATTTTTAATTTTAAA
1 TTTTAATAAATTTTAATTTTAAA
86930100 AAATATTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 8 0.38
26 13 0.62
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (25 bp):
TTTTAATAAATTTTAATTTTAAATA
Found at i:86930116 original size:26 final size:28
Alignment explanation
Indices: 86930020--86930117 Score: 78
Period size: 28 Copynumber: 3.5 Consensus size: 28
86930010 ATTTAATTAT
* * *
86930020 TTTTTAAAATTTTAAAATATTAAAAAAGTA
1 TTTTTATAATTTT-ATATTTTAAAAAA-TA
86930050 TTTTTTATAAATTTTATATTTT---AAATA
1 -TTTTTAT-AATTTTATATTTTAAAAAATA
*
86930077 TTTTAATAATTTT-TAATTTTAAAAAATA
1 TTTTTATAATTTTAT-ATTTTAAAAAATA
*
86930105 TTTTTATATTTTT
1 TTTTTATAATTTT
86930118 TTTGAATTTT
Statistics
Matches: 56, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
24 1 0.02
25 11 0.20
26 6 0.11
27 2 0.04
28 19 0.34
31 11 0.20
32 6 0.11
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (28 bp):
TTTTTATAATTTTATATTTTAAAAAATA
Found at i:86930573 original size:32 final size:32
Alignment explanation
Indices: 86930537--86930600 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
86930527 CGGAACATGT
* *
86930537 TTTTTTTTCCATTATTTTCTATCAAAAATGAA
1 TTTTTTTCCCATTATTTTCTATAAAAAATGAA
86930569 TTTTTTTCCCATTATTTTCTATAAAAAATGAA
1 TTTTTTTCCCATTATTTTCTATAAAAAATGAA
86930601 AGTGAAAACT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.33, C:0.12, G:0.03, T:0.52
Consensus pattern (32 bp):
TTTTTTTCCCATTATTTTCTATAAAAAATGAA
Found at i:86934299 original size:25 final size:27
Alignment explanation
Indices: 86934257--86934312 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 27
86934247 CAAGCGCGAT
* * *
86934257 TTTTTTATATTAGAATATT-TTTTTTG
1 TTTTTTAAATAAGAATATTATTTTTTA
86934283 TTTTTTAAATAAG-ATATTATTTTTTA
1 TTTTTTAAATAAGAATATTATTTTTTA
86934309 TTTT
1 TTTT
86934313 CAAATTAGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 5 0.19
26 21 0.81
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (27 bp):
TTTTTTAAATAAGAATATTATTTTTTA
Found at i:86940928 original size:14 final size:14
Alignment explanation
Indices: 86940903--86940970 Score: 68
Period size: 14 Copynumber: 4.9 Consensus size: 14
86940893 AATACATTAC
*
86940903 CTTTATTTCTTCTTT
1 CTTTCTTTCTTC-TT
86940918 CTTTC-TTCTTCTT
1 CTTTCTTTCTTCTT
* *
86940931 CTTTTTTTCTTCTC
1 CTTTCTTTCTTCTT
*
86940945 CTTTCTCTCTT-TT
1 CTTTCTTTCTTCTT
*
86940958 CTTTCTCTCTTCT
1 CTTTCTTTCTTCT
86940971 GATGGGTGGT
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
13 18 0.40
14 23 0.51
15 4 0.09
ACGTcount: A:0.01, C:0.29, G:0.00, T:0.69
Consensus pattern (14 bp):
CTTTCTTTCTTCTT
Found at i:86940931 original size:17 final size:17
Alignment explanation
Indices: 86940909--86940943 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
86940899 TTACCTTTAT
86940909 TTCTTCTTTCTTTCTTC
1 TTCTTCTTTCTTTCTTC
*
86940926 TTCTTCTTTTTTTCTTC
1 TTCTTCTTTCTTTCTTC
86940943 T
1 T
86940944 CCTTTCTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (17 bp):
TTCTTCTTTCTTTCTTC
Done.