Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 286 of 313
Found at i:87273403 original size:174 final size:174
Alignment explanation
Indices: 87273138--87273639 Score: 932
Period size: 174 Copynumber: 2.9 Consensus size: 174
87273128 AAATTGTACA
* *
87273138 GCACTAAGTGTGCGAGTTTACAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
87273203 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
87273268 TTTTGGACAGCGGAGAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAGAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
87273312 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTGAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
87273377 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
87273442 TTTTGGACAGCGGAGAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAGAAGGTAAGTGTGCGAACTTGAAATGCATG
87273486 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* * *
87273551 TGTGCGAACTCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
*
87273616 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAGAAGGTAAGT
87273640 ACCTTGAGTT
Statistics
Matches: 318, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 318 1.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
TTTTGGACAGCGGAGAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:87278976 original size:40 final size:40
Alignment explanation
Indices: 87278738--87278962 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
87278728 TTGAATGATG
* * * *
87278738 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
87278778 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
87278818 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
87278857 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
87278897 TCCGGG-TCAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
87278938 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
87278963 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 16, Indels: 14
0.84 0.08 0.07
Matches are distributed among these distances:
39 35 0.22
40 116 0.72
41 11 0.07
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:87300488 original size:31 final size:30
Alignment explanation
Indices: 87300450--87300508 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 30
87300440 TTGTAGGACA
87300450 TCGGAAGAGATCTCAGTAGCAGTCGTCGCG
1 TCGGAAGAGATCTCAGTAGCAGTCGTCGCG
*
87300480 NTCGGAAGAGATTTCAGTAGCAGTCGTCG
1 -TCGGAAGAGATCTCAGTAGCAGTCGTCG
87300509 TGAATCAGGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.22
Consensus pattern (30 bp):
TCGGAAGAGATCTCAGTAGCAGTCGTCGCG
Found at i:87313169 original size:16 final size:15
Alignment explanation
Indices: 87313145--87313174 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
87313135 AACTATTTTA
87313145 TTACAAATTTCACTC
1 TTACAAATTTCACTC
87313160 TTACATAATTTCACT
1 TTACA-AATTTCACT
87313175 TGCTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:87314719 original size:21 final size:21
Alignment explanation
Indices: 87314693--87314775 Score: 58
Period size: 21 Copynumber: 3.9 Consensus size: 21
87314683 TGATCAGTAT
*
87314693 ACGACACATAAAGTGCCTAAA
1 ACGACACACAAAGTGCCTAAA
* * * *
87314714 ACGACACACGAGGTGCCTGAT
1 ACGACACACAAAGTGCCTAAA
* * *
87314735 ACGACATACGAGGTGCCTGAAA
1 ACGACACACAAAGTGCCT-AAA
* *
87314757 TATGACACATAAAGTGCCT
1 -ACGACACACAAAGTGCCT
87314776 GATCGATAAA
Statistics
Matches: 47, Mismatches: 13, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
21 33 0.70
22 1 0.02
23 13 0.28
ACGTcount: A:0.37, C:0.24, G:0.22, T:0.17
Consensus pattern (21 bp):
ACGACACACAAAGTGCCTAAA
Found at i:87315173 original size:15 final size:15
Alignment explanation
Indices: 87315148--87315205 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
87315138 TCATATATAT
87315148 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
87315164 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
87315179 AATAATTTCAATCAA
1 TATAAATTCAATCAA
87315194 TATAAATTCAAT
1 TATAAATTCAAT
87315206 AAATTCATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:87319350 original size:38 final size:39
Alignment explanation
Indices: 87319308--87319414 Score: 137
Period size: 39 Copynumber: 2.8 Consensus size: 39
87319298 TTCGGAACAG
87319308 GGAATCCAGAAAC-CG-ACAAATGCCTTCGGGCTTAGCCC
1 GGAAT-CAGAAACTCGCACAAATGCCTTCGGGCTTAGCCC
* * *
87319346 GGAATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCCC
1 GGAATCAGAAACTCGCACAAATGCCTTCGGGCTTAGCCC
* * *
87319385 GGAATTAGTATCTCGCACAAATGCCTTCGG
1 GGAATCAGAAACTCGCACAAATGCCTTCGG
87319415 ATCTTAGTCC
Statistics
Matches: 64, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
37 4 0.06
38 7 0.11
39 53 0.83
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.22
Consensus pattern (39 bp):
GGAATCAGAAACTCGCACAAATGCCTTCGGGCTTAGCCC
Found at i:87319366 original size:39 final size:39
Alignment explanation
Indices: 87319323--87319466 Score: 188
Period size: 39 Copynumber: 3.7 Consensus size: 39
87319313 CCAGAAACCG
87319323 ACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGC
1 ACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGC
87319362 ACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGC
1 ACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGC
* * *
87319401 ACAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGC
1 ACAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TCGC
87319442 AC-AA-GCCTTCGGGACTTAGCCCGGA
1 ACAAATGCCTTCGGG-CTTAGCCCGGA
87319467 CATCATTCAA
Statistics
Matches: 95, Mismatches: 5, Indels: 10
0.86 0.05 0.09
Matches are distributed among these distances:
39 71 0.75
40 15 0.16
41 9 0.09
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
ACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGC
Found at i:87325947 original size:62 final size:62
Alignment explanation
Indices: 87325850--87325972 Score: 219
Period size: 62 Copynumber: 2.0 Consensus size: 62
87325840 CCCAATCAAA
* *
87325850 TGTAACACCCCGAACCCGAGACCGACACCGGAGTCGAACACGAGGTGTTAGCAGACTTTAAG
1 TGTAACACCCCGAACCCGAAACCGACACCGGAGTCGAACACGAGGTGTTAACAGACTTTAAG
*
87325912 TGTAACACCCCGAACCCGAAACCGACACCGGAGTCGAACACGAGGTGTTAACTGACTTTAA
1 TGTAACACCCCGAACCCGAAACCGACACCGGAGTCGAACACGAGGTGTTAACAGACTTTAA
87325973 CCCCTTATAA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.32, C:0.29, G:0.24, T:0.15
Consensus pattern (62 bp):
TGTAACACCCCGAACCCGAAACCGACACCGGAGTCGAACACGAGGTGTTAACAGACTTTAAG
Found at i:87346040 original size:29 final size:30
Alignment explanation
Indices: 87345983--87346101 Score: 115
Period size: 29 Copynumber: 4.2 Consensus size: 30
87345973 TACATACATG
* *
87345983 CATATGGTCCA-CTAGGCCCAA-TCTTATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
* *
87346011 CAAATGGCCCATCTA-GCCCAGTTCATATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
* * *
87346040 CTTATGGCCC-GCTAGGCCCAATTCACATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
* *
87346069 CATATGGCCCAT-TATGCCCAAATCATATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
87346098 -ATAT
1 CATAT
87346102 TTGTGCTCAC
Statistics
Matches: 73, Mismatches: 14, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
28 21 0.29
29 52 0.71
ACGTcount: A:0.27, C:0.29, G:0.13, T:0.30
Consensus pattern (30 bp):
CATATGGCCCATCTAGGCCCAATTCATATT
Found at i:87346057 original size:57 final size:58
Alignment explanation
Indices: 87345985--87346097 Score: 140
Period size: 58 Copynumber: 2.0 Consensus size: 58
87345975 CATACATGCA
* ** **
87345985 TATGGTCCACTAGGCCCAA-TCTTATTCAAATGGCCCATCTA-GCCCAGTTCATATTCT
1 TATGGCCCACTAGGCCCAATTCACATTCAAATGGCCCAT-TATGCCCAAATCATATTCT
* *
87346042 TATGGCCCGCTAGGCCCAATTCACATTCATATGGCCCATTATGCCCAAATCATATT
1 TATGGCCCACTAGGCCCAATTCACATTCAAATGGCCCATTATGCCCAAATCATATT
87346098 ATATTTGTGC
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
57 19 0.40
58 28 0.60
ACGTcount: A:0.26, C:0.30, G:0.14, T:0.30
Consensus pattern (58 bp):
TATGGCCCACTAGGCCCAATTCACATTCAAATGGCCCATTATGCCCAAATCATATTCT
Found at i:87351056 original size:25 final size:26
Alignment explanation
Indices: 87351028--87351078 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
87351018 AATATTGTAT
* * *
87351028 ATAATTTTTAT-TAATAATTTTAATA
1 ATAATTTATATATAAAAATTTGAATA
87351053 ATAATTTATATATAAAAATTTGAATA
1 ATAATTTATATATAAAAATTTGAATA
87351079 TAAAAATTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (26 bp):
ATAATTTATATATAAAAATTTGAATA
Found at i:87351072 original size:14 final size:14
Alignment explanation
Indices: 87351030--87351086 Score: 50
Period size: 14 Copynumber: 4.3 Consensus size: 14
87351020 TATTGTATAT
* *
87351030 AATTTTTAT-TAAT
1 AATTTATATATAAA
*
87351043 AATTT-TA-ATAAT
1 AATTTATATATAAA
87351055 AATTTATATATAAA
1 AATTTATATATAAA
87351069 AATTTGA-ATATAAA
1 AATTT-ATATATAAA
87351083 AATT
1 AATT
87351087 ATTAATTCAA
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
12 11 0.28
13 7 0.18
14 20 0.51
15 1 0.03
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (14 bp):
AATTTATATATAAA
Found at i:87351081 original size:25 final size:24
Alignment explanation
Indices: 87351026--87351081 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 24
87351016 GTAATATTGT
* * *
87351026 ATATAATTTTTATTAATAATTTTA
1 ATATAATTTATATTAAAAATTTGA
87351050 ATAATAATTTATATATAAAAATTTGA
1 AT-ATAATTTATAT-TAAAAATTTGA
87351076 ATATAA
1 ATATAA
87351082 AAATTATTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 2 0.07
25 14 0.52
26 11 0.41
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (24 bp):
ATATAATTTATATTAAAAATTTGA
Found at i:87351417 original size:12 final size:12
Alignment explanation
Indices: 87351400--87351428 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
87351390 TTTTATGCTG
87351400 ATGTGGCATGCC
1 ATGTGGCATGCC
87351412 ATGTGGCATGCC
1 ATGTGGCATGCC
87351424 ATGTG
1 ATGTG
87351429 TCATCTCTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.21, G:0.34, T:0.28
Consensus pattern (12 bp):
ATGTGGCATGCC
Found at i:87352758 original size:37 final size:37
Alignment explanation
Indices: 87352708--87352781 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
87352698 CCTATACTTG
87352708 CACACAAACTTAAATTAAAACTCAATAAACAAATCAT
1 CACACAAACTTAAATTAAAACTCAATAAACAAATCAT
87352745 CACACAAACTTAAATTAAAACTCAATAAACAAATCAT
1 CACACAAACTTAAATTAAAACTCAATAAACAAATCAT
87352782 TCTTTGGATC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.57, C:0.22, G:0.00, T:0.22
Consensus pattern (37 bp):
CACACAAACTTAAATTAAAACTCAATAAACAAATCAT
Found at i:87354599 original size:21 final size:23
Alignment explanation
Indices: 87354569--87354610 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
87354559 ATAAAATATA
87354569 TATTAGATTAAATTAA-ATTTTG
1 TATTAGATTAAATTAAGATTTTG
*
87354591 TATTA-ATTAATTTAAGATTT
1 TATTAGATTAAATTAAGATTT
87354611 CACTAATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.52
Consensus pattern (23 bp):
TATTAGATTAAATTAAGATTTTG
Found at i:87362230 original size:29 final size:28
Alignment explanation
Indices: 87362198--87362255 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 28
87362188 CATATTCATC
*
87362198 TGGCCCATTTGGCCCAAATCACCTTTATA
1 TGGCCCATTAGGCCCAAATCACC-TTATA
*
87362227 TGGCCCGTTAGGCCCAAATCACCTTATA
1 TGGCCCATTAGGCCCAAATCACCTTATA
87362255 T
1 T
87362256 TCATGCTCAC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 6 0.22
29 21 0.78
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.29
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAAATCACCTTATA
Found at i:87364372 original size:26 final size:26
Alignment explanation
Indices: 87364341--87364448 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
87364331 TGAAATGCCC
*
87364341 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
87364367 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
87364393 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
87364419 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
87364445 ATCA
1 ATCA
87364449 ATTTGTACCA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.37, C:0.26, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:87366992 original size:56 final size:56
Alignment explanation
Indices: 87366931--87367041 Score: 168
Period size: 56 Copynumber: 2.0 Consensus size: 56
87366921 ACCATGGCAT
* * * *
87366931 CGATATATGTGTACAAGTAAGATCATGTTTTATACGTTGGTATCGATATGTGATTC
1 CGATATATGTGTACAAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
* *
87366987 CGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
1 CGATATATGTGTACAAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
87367042 ACATGTAAGA
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 49 1.00
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.36
Consensus pattern (56 bp):
CGATATATGTGTACAAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
Found at i:87367699 original size:39 final size:40
Alignment explanation
Indices: 87367615--87367699 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
87367605 ACTTAATTCA
* * * *
87367615 CCAGCATTAAGCCTGCGGGACTTTAAACCCGGATACAATC
1 CCAGCATGAAGCCAGCGGGACTCTAAACCCAGATACAATC
*
87367655 CCAGCATGAAGCCAGCGGGTCTCT-AACCCAGATACAATC
1 CCAGCATGAAGCCAGCGGGACTCTAAACCCAGATACAATC
*
87367694 TCAGCA
1 CCAGCA
87367700 CAATTCATTT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 19 0.49
40 20 0.51
ACGTcount: A:0.31, C:0.32, G:0.20, T:0.18
Consensus pattern (40 bp):
CCAGCATGAAGCCAGCGGGACTCTAAACCCAGATACAATC
Found at i:87367884 original size:47 final size:46
Alignment explanation
Indices: 87367773--87367893 Score: 138
Period size: 47 Copynumber: 2.6 Consensus size: 46
87367763 TGCACACTTT
* *
87367773 TCACAATTGGTCATTCGGCCTTATCACA-TATTCACGTACACATATA
1 TCAC-ATTGGCCATTCGGCCTTATCACATTATGCACGTACACATATA
** * * *
87367819 TCACATTAACCATCCGGCCTTATCACATGTATGCACTTCCACAT-TCA
1 TCACATTGGCCATTCGGCCTTATCACAT-TATGCACGTACACATAT-A
87367866 TCACATTGGCCATTCGGCCTTATCACAT
1 TCACATTGGCCATTCGGCCTTATCACAT
87367894 ATCATGGCCA
Statistics
Matches: 62, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
45 19 0.31
46 5 0.08
47 38 0.61
ACGTcount: A:0.27, C:0.31, G:0.11, T:0.31
Consensus pattern (46 bp):
TCACATTGGCCATTCGGCCTTATCACATTATGCACGTACACATATA
Found at i:87383543 original size:13 final size:13
Alignment explanation
Indices: 87383522--87383559 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
87383512 CCTAAAGGAC
*
87383522 ACATGGCCGTGTA
1 ACATAGCCGTGTA
87383535 ACATAGCCGTGTA
1 ACATAGCCGTGTA
87383548 ACATAGCCGTGT
1 ACATAGCCGTGT
87383560 GTTGCACACG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (13 bp):
ACATAGCCGTGTA
Found at i:87393123 original size:40 final size:40
Alignment explanation
Indices: 87393049--87393269 Score: 261
Period size: 40 Copynumber: 5.6 Consensus size: 40
87393039 AACCCAAGTA
* *
87393049 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
87393088 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* * *
87393128 CCTTCAGGACTTAGCCCGGATATAG-CAACTCGCACAAACG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
** * *
87393168 CCTTCGGGACTTAGCCTTGATATAGTCAATAGCACAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* * * *
87393208 CCTTCGAGATTTAGCCCGGATATAGTCACTAGCGC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
87393247 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
87393270 CATCCGAATA
Statistics
Matches: 153, Mismatches: 25, Indels: 8
0.82 0.13 0.04
Matches are distributed among these distances:
39 36 0.24
40 115 0.75
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:87394426 original size:16 final size:15
Alignment explanation
Indices: 87394405--87394439 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
87394395 TTATTACCAA
*
87394405 ATCACTCTCCCTTCC
1 ATCACTCTCCATTCC
87394420 GATCACTCTCCATTCC
1 -ATCACTCTCCATTCC
87394436 ATCA
1 ATCA
87394440 ATTCAAAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 4 0.22
16 14 0.78
ACGTcount: A:0.20, C:0.46, G:0.03, T:0.31
Consensus pattern (15 bp):
ATCACTCTCCATTCC
Found at i:87403228 original size:15 final size:16
Alignment explanation
Indices: 87403210--87403239 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
87403200 AATTGTTTTA
87403210 TTACA-AATTTCACTC
1 TTACATAATTTCACTC
87403225 TTACATAATTTCACT
1 TTACATAATTTCACT
87403240 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (16 bp):
TTACATAATTTCACTC
Found at i:87403559 original size:50 final size:50
Alignment explanation
Indices: 87403449--87403731 Score: 259
Period size: 50 Copynumber: 5.6 Consensus size: 50
87403439 ATCTGGTACG
* * *
87403449 CATAGTAGCCTGCACTTAGTACTACACATGCGACC-AACAATCTAGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACTATCTAATACA
* * *
87403498 CGTAGTAGCCTGCTCTTAGTACTACACATGTGACCTAACCATCTAATACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACTATCTAATACA
* * * * * *** *
87403548 CGTAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAAGTTGTCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCT-AA-CTATCTAATACA
* * * * *
87403599 CATAGTAGCCTACACTTAATATTACACATGCGACCTAACTATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACTATCTAATACA
* *
87403649 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAATCATCTTAA-ACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCT-AACT-ATC-TAATACA
* * *
87403701 CATAGTAACCTACA-TATGGTACTACACATGT
1 CATAGTAGCCTGCACT-TAGTACTACACATGT
87403732 TTTCTCACAA
Statistics
Matches: 188, Mismatches: 38, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
49 33 0.18
50 83 0.44
51 38 0.20
52 32 0.17
53 2 0.01
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.27
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACTATCTAATACA
Found at i:87403648 original size:101 final size:101
Alignment explanation
Indices: 87403500--87403681 Score: 292
Period size: 101 Copynumber: 1.8 Consensus size: 101
87403490 CTAGTACACG
* * * * *
87403500 TAGTAGCCTGCTCTTAGTACTACACATGTGACCTAACCATCTAATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTACACTTAATACTACACATGCGACCTAACCATCTAATACACATAGTAGCCTGCACTT
87403565 AGTACTACACACGTGATTGAAGTTGTCGGGTACGCA
66 AGTACTACACACGTGATTGAAGTTGTCGGGTACGCA
* * *
87403601 TAGTAGCCTACACTTAATATTACACATGCGACCTAACTATCTGATACACATAGTAGCCTGCACTT
1 TAGTAGCCTACACTTAATACTACACATGCGACCTAACCATCTAATACACATAGTAGCCTGCACTT
87403666 AGTACTACACACGTGA
66 AGTACTACACACGTGA
87403682 CCTAAAATCA
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
101 73 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.27
Consensus pattern (101 bp):
TAGTAGCCTACACTTAATACTACACATGCGACCTAACCATCTAATACACATAGTAGCCTGCACTT
AGTACTACACACGTGATTGAAGTTGTCGGGTACGCA
Found at i:87416699 original size:24 final size:24
Alignment explanation
Indices: 87416667--87416714 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
87416657 AATAACATTT
87416667 ATATCATTGATTCAAGCATCTAAC
1 ATATCATTGATTCAAGCATCTAAC
87416691 ATATCATTGATTCAAGCATCTAAC
1 ATATCATTGATTCAAGCATCTAAC
87416715 TTACCATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.33
Consensus pattern (24 bp):
ATATCATTGATTCAAGCATCTAAC
Found at i:87416728 original size:24 final size:24
Alignment explanation
Indices: 87416671--87416725 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
87416661 ACATTTATAT
* *
87416671 CATTGATTCAAGCATCTAACATAT
1 CATTAATTCAAGCATCTAACATAC
* *
87416695 CATTGATTCAAGCATCTAACTTAC
1 CATTAATTCAAGCATCTAACATAC
87416719 CA-TAATT
1 CATTAATT
87416726 TCACAACTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
23 4 0.14
24 24 0.86
ACGTcount: A:0.36, C:0.22, G:0.07, T:0.35
Consensus pattern (24 bp):
CATTAATTCAAGCATCTAACATAC
Found at i:87416962 original size:56 final size:56
Alignment explanation
Indices: 87416902--87417053 Score: 243
Period size: 56 Copynumber: 2.7 Consensus size: 56
87416892 TCCCAGACAG
* *
87416902 GGTCTTACTCGCACACATATATCAGAGTCACATATCGATGCCAACGTACTAAACGT
1 GGTCTTACTCGCACACATATATCGGAGTCACATATCGATGCCAACGTACTAAACAT
* * *
87416958 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAATGTATTAAACAT
1 GGTCTTACTCGCACACATATATCGGAGTCACATATCGATGCCAACGTACTAAACAT
87417014 GGTCTTACTCGC-CTACATATATCGGAGTCACATATCGATG
1 GGTCTTACTCGCAC-ACATATATCGGAGTCACATATCGATG
87417054 TCGTGGTCTT
Statistics
Matches: 89, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
55 1 0.01
56 88 0.99
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGGAGTCACATATCGATGCCAACGTACTAAACAT
Found at i:87421094 original size:39 final size:40
Alignment explanation
Indices: 87421035--87421126 Score: 141
Period size: 40 Copynumber: 2.3 Consensus size: 40
87421025 TTTCCAAACC
* * *
87421035 CAAATACCTTCGGGATTTAG-CTGGATATAGCAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGCAACTCGCA
*
87421074 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGCAACTCGCA
87421114 CAAATGCCTTCGG
1 CAAATGCCTTCGG
87421127 NNNNNNNNNN
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
39 18 0.38
40 30 0.62
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGCAACTCGCA
Found at i:87422862 original size:13 final size:13
Alignment explanation
Indices: 87422844--87422869 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
87422834 ATTTTTATTT
87422844 TTAACATAAAATA
1 TTAACATAAAATA
87422857 TTAACATAAAATA
1 TTAACATAAAATA
87422870 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:87428301 original size:79 final size:81
Alignment explanation
Indices: 87428199--87428383 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 81
87428189 GCTCCTCGTT
* *
87428199 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAACC
* *
87428261 CGGATTTAGTAAC-TCGCA
63 CGGATATAGTAACTTAGCA
**
87428279 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
87428343 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
87428359 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
87428384 CATCATTCAA
Statistics
Matches: 92, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
78 5 0.05
79 53 0.58
80 34 0.37
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:87428383 original size:40 final size:40
Alignment explanation
Indices: 87428199--87428383 Score: 211
Period size: 40 Copynumber: 4.7 Consensus size: 40
87428189 GCTCCTCGTT
* * *
87428199 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTACTTCGCA
* *
87428239 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGT-ACTTCGCA
87428279 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTA-TCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTACT-TCGCA
* * *
87428318 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGT-ACTTCGCA
87428359 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
87428384 CATCATTCAA
Statistics
Matches: 124, Mismatches: 11, Indels: 20
0.80 0.07 0.13
Matches are distributed among these distances:
38 3 0.02
39 30 0.24
40 76 0.61
41 14 0.11
42 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTACTTCGCA
Found at i:87436262 original size:79 final size:82
Alignment explanation
Indices: 87436151--87436335 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
87436141 GCTACTCGTT
* * *
87436151 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
87436214 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
87436231 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
87436294 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
87436311 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
87436336 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:87436335 original size:40 final size:40
Alignment explanation
Indices: 87436132--87436335 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
87436122 CGGAATTTAA
** *
87436132 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
87436172 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
87436212 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
87436251 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
87436291 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
87436331 CCGGA
1 CCGGA
87436336 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:87438481 original size:28 final size:28
Alignment explanation
Indices: 87438450--87438582 Score: 101
Period size: 28 Copynumber: 4.7 Consensus size: 28
87438440 ATAATGTGAT
*
87438450 TTGGGCCAGATGGGCGATATAAATGAGA
1 TTGGGCCAGATGGGCCATATAAATGAGA
* * * *
87438478 TTGGGCTA-ACGGGCCATATGAATGTGAA
1 TTGGGCCAGATGGGCCATATAAATGAG-A
* * *
87438506 TTAGGCCTGATGGGCCATATGAACGTGA-A
1 TTGGGCCAGATGGGCCATAT-AA-ATGAGA
* * * *
87438535 TTAGGCCGGAAGGGCCATATAAATGCGA
1 TTGGGCCAGATGGGCCATATAAATGAGA
87438563 TTGGGCCTAG-TGGGCCATAT
1 TTGGGCC-AGATGGGCCATAT
87438583 GCATGTATGT
Statistics
Matches: 80, Mismatches: 19, Indels: 12
0.72 0.17 0.11
Matches are distributed among these distances:
27 16 0.20
28 31 0.39
29 30 0.38
30 1 0.01
31 2 0.03
ACGTcount: A:0.28, C:0.16, G:0.33, T:0.23
Consensus pattern (28 bp):
TTGGGCCAGATGGGCCATATAAATGAGA
Found at i:87438501 original size:27 final size:29
Alignment explanation
Indices: 87438461--87438583 Score: 83
Period size: 29 Copynumber: 4.3 Consensus size: 29
87438451 TGGGCCAGAT
* * *
87438461 GGGCGATATAAATGAG-ATT-GGGCTAAC
1 GGGCCATATGAATGAGAATTAGGCCTAAC
* * *
87438488 GGGCCATATGAATGTGAATTAGGCCTGAT
1 GGGCCATATGAATGAGAATTAGGCCTAAC
* * *
87438517 GGGCCATATGAACGTGAATTAGGCCGGAA-
1 GGGCCATATGAATGAGAATTAGGCC-TAAC
* * * **
87438546 GGGCCATATAAATGCG-ATTGGGCCTAGT
1 GGGCCATATGAATGAGAATTAGGCCTAAC
87438574 GGGCCATATG
1 GGGCCATATG
87438584 CATGTATGTA
Statistics
Matches: 76, Mismatches: 16, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
27 14 0.18
28 19 0.25
29 42 0.55
30 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.33, T:0.23
Consensus pattern (29 bp):
GGGCCATATGAATGAGAATTAGGCCTAAC
Found at i:87438523 original size:29 final size:29
Alignment explanation
Indices: 87438488--87438588 Score: 116
Period size: 29 Copynumber: 3.5 Consensus size: 29
87438478 TTGGGCTAAC
87438488 GGGCCATATGAATGTGAATTAGGCCTGAT
1 GGGCCATATGAATGTGAATTAGGCCTGAT
* * *
87438517 GGGCCATATGAACGTGAATTAGGCCGGAA
1 GGGCCATATGAATGTGAATTAGGCCTGAT
* * *
87438546 GGGCCATATAAATGCG-ATTGGGCCT-AGT
1 GGGCCATATGAATGTGAATTAGGCCTGA-T
*
87438574 GGGCCATATGCATGT
1 GGGCCATATGAATGT
87438589 ATGTAGGGGT
Statistics
Matches: 59, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
27 1 0.02
28 19 0.32
29 39 0.66
ACGTcount: A:0.27, C:0.17, G:0.33, T:0.24
Consensus pattern (29 bp):
GGGCCATATGAATGTGAATTAGGCCTGAT
Found at i:87442466 original size:20 final size:20
Alignment explanation
Indices: 87442441--87442478 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
87442431 GACTAAACCG
87442441 AGAACTTTAG-AAATTTTTAC
1 AGAAC-TTAGAAAATTTTTAC
87442461 AGAACTTAGAAAATTTTT
1 AGAACTTAGAAAATTTTT
87442479 GCACTAAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.42, C:0.08, G:0.11, T:0.39
Consensus pattern (20 bp):
AGAACTTAGAAAATTTTTAC
Found at i:87452125 original size:93 final size:93
Alignment explanation
Indices: 87452013--87452184 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
87452003 CGCCCATAAG
* *
87452013 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
87452078 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
87452106 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
87452171 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
87452185 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:87452181 original size:46 final size:46
Alignment explanation
Indices: 87452006--87452181 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
87451996 TGTAACCCGC
* * *
87452006 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
87452052 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
87452102 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
87452145 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
87452182 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:87462846 original size:18 final size:20
Alignment explanation
Indices: 87462806--87462849 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
87462796 TGGGCCACAT
*
87462806 TGGGTCGAAATGGGCCTTTG
1 TGGGCCGAAATGGGCCTTTG
87462826 TGGGCCGAAATGGG-C-TTG
1 TGGGCCGAAATGGGCCTTTG
87462844 TGGGCC
1 TGGGCC
87462850 CCACACAGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 9 0.39
19 1 0.04
20 13 0.57
ACGTcount: A:0.14, C:0.18, G:0.43, T:0.25
Consensus pattern (20 bp):
TGGGCCGAAATGGGCCTTTG
Found at i:87465562 original size:74 final size:74
Alignment explanation
Indices: 87465449--87465662 Score: 428
Period size: 74 Copynumber: 2.9 Consensus size: 74
87465439 AAAGCTATCG
87465449 GATATTCACAAAGCCTCAAACATAGGGTATAATGCCTATGCCATGTCCCAAATATGGTCTTACAC
1 GATATTCACAAAGCCTCAAACATAGGGTATAATGCCTATGCCATGTCCCAAATATGGTCTTACAC
87465514 TAGCTATTT
66 TAGCTATTT
87465523 GATATTCACAAAGCCTCAAACATAGGGTATAATGCCTATGCCATGTCCCAAATATGGTCTTACAC
1 GATATTCACAAAGCCTCAAACATAGGGTATAATGCCTATGCCATGTCCCAAATATGGTCTTACAC
87465588 TAGCTATTT
66 TAGCTATTT
87465597 GATATTCACAAAGCCTCAAACATAGGGTATAATGCCTATGCCATGTCCCAAATATGGTCTTACAC
1 GATATTCACAAAGCCTCAAACATAGGGTATAATGCCTATGCCATGTCCCAAATATGGTCTTACAC
87465662 T
66 T
87465663 GGCTCAACCA
Statistics
Matches: 140, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 140 1.00
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (74 bp):
GATATTCACAAAGCCTCAAACATAGGGTATAATGCCTATGCCATGTCCCAAATATGGTCTTACAC
TAGCTATTT
Found at i:87465798 original size:50 final size:48
Alignment explanation
Indices: 87465732--87465858 Score: 158
Period size: 50 Copynumber: 2.7 Consensus size: 48
87465722 CGAGGCTGAC
*
87465732 GCCATGTCCCAAACATGGTCTTACACTAGCTCTCACATAT-TCGTA-CCGAT
1 GCCATGTCCCAGACATGGTCTTACACTAG----CACATATCTCGTAGCCGAT
87465782 GCCATGTCCCAGACATGGTCTTACACT-G-ACATATCTCGTAGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTAGCACATATCTCGTAGCCGAT
*
87465828 G-CATGTGCCAGACAT-GTCTTACACTAGCACA
1 GCCATGTCCCAGACATGGTCTTACACTAGCACA
87465859 CAAATAACCT
Statistics
Matches: 71, Mismatches: 2, Indels: 12
0.84 0.02 0.14
Matches are distributed among these distances:
44 16 0.23
45 19 0.27
46 9 0.13
49 1 0.01
50 26 0.37
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (48 bp):
GCCATGTCCCAGACATGGTCTTACACTAGCACATATCTCGTAGCCGAT
Found at i:87478463 original size:46 final size:46
Alignment explanation
Indices: 87478413--87478588 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
87478403 TGATTGAGCA
87478413 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
87478459 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
87478504 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
87478552 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
87478589 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:87478569 original size:93 final size:93
Alignment explanation
Indices: 87478410--87478581 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
87478400 GGATGATTGA
* *
87478410 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
87478475 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
87478503 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
87478568 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
87478582 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:87483496 original size:27 final size:27
Alignment explanation
Indices: 87483454--87483545 Score: 96
Period size: 27 Copynumber: 3.4 Consensus size: 27
87483444 TCCTAAATTA
* *
87483454 GGTAAAATGACTGTAATACCCTTG-CG
1 GGTAAAATGACCGTAATACCCCTGTCG
* *
87483480 GAGTAAAATGACCGTAATGCCCCTGTTG
1 G-GTAAAATGACCGTAATACCCCTGTCG
* * **
87483508 GGTAAAATGACCATAATACCACTGTAT
1 GGTAAAATGACCGTAATACCCCTGTCG
87483535 GGTAAAATGAC
1 GGTAAAATGAC
87483546 AATTATGCCC
Statistics
Matches: 55, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
26 1 0.02
27 52 0.95
28 2 0.04
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (27 bp):
GGTAAAATGACCGTAATACCCCTGTCG
Found at i:87487359 original size:30 final size:30
Alignment explanation
Indices: 87487301--87487361 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
87487291 TTCCCGAGCC
*
87487301 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATCCAAAAGTT
* * * *
87487331 TAGGGGCAAAATTGTAATTTTCCCAAAGTT
1 TAGGGGCAAAAGTGTAAATATCCAAAAGTT
87487361 T
1 T
87487362 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.38, C:0.10, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATCCAAAAGTT
Found at i:87512953 original size:29 final size:29
Alignment explanation
Indices: 87512905--87513015 Score: 136
Period size: 29 Copynumber: 3.8 Consensus size: 29
87512895 TATGGCCTAC
*
87512905 TAGGCCC-AATCTCATTCATATAGCCCAT
1 TAGGCCCAAATCACATTCATATAGCCCAT
** *
87512933 TAGGCCCAAATCTTATTCATATGGCCCAT
1 TAGGCCCAAATCACATTCATATAGCCCAT
*
87512962 TAGGACCAAATCACATTCATACGGT-GCCCAT
1 TAGGCCCAAATCACATTCATA---TAGCCCAT
87512993 TAGGCCCAAATCACATTCATATA
1 TAGGCCCAAATCACATTCATATA
87513016 CATGCTTTCA
Statistics
Matches: 72, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
28 8 0.11
29 37 0.51
31 26 0.36
32 1 0.01
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (29 bp):
TAGGCCCAAATCACATTCATATAGCCCAT
Found at i:87513091 original size:17 final size:17
Alignment explanation
Indices: 87513069--87513110 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
87513059 TGCCTATTAT
87513069 GGGCCCAAC-AGCCCATC
1 GGGCCC-ACTAGCCCATC
87513086 GGGCCCACTTAGCCCATC
1 GGGCCCAC-TAGCCCATC
87513104 GTGGCCC
1 G-GGCCC
87513111 GGTTGGCCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 2 0.09
17 6 0.27
18 9 0.41
19 5 0.23
ACGTcount: A:0.17, C:0.45, G:0.26, T:0.12
Consensus pattern (17 bp):
GGGCCCACTAGCCCATC
Found at i:87513230 original size:16 final size:16
Alignment explanation
Indices: 87513205--87513248 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
87513195 ATAGCCAAAC
**
87513205 TTTTGGCTTTTTGGCA
1 TTTTGGCTTTTCAGCA
*
87513221 TTTTGACTTTTCAGCA
1 TTTTGGCTTTTCAGCA
87513237 TTTTGGCTTTTC
1 TTTTGGCTTTTC
87513249 GGCTTTTCGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.09, C:0.16, G:0.18, T:0.57
Consensus pattern (16 bp):
TTTTGGCTTTTCAGCA
Found at i:87513242 original size:24 final size:24
Alignment explanation
Indices: 87513213--87513263 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
87513203 ACTTTTGGCT
87513213 TTTTGGCATTTT-GACTTTTCAGCA
1 TTTTGGC-TTTTCGACTTTTCAGCA
* *
87513237 TTTTGGCTTTTCGGCTTTTCGGCA
1 TTTTGGCTTTTCGACTTTTCAGCA
87513261 TTT
1 TTT
87513264 GCCAATCTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 4 0.17
24 20 0.83
ACGTcount: A:0.10, C:0.18, G:0.20, T:0.53
Consensus pattern (24 bp):
TTTTGGCTTTTCGACTTTTCAGCA
Found at i:87514893 original size:43 final size:43
Alignment explanation
Indices: 87514827--87514993 Score: 149
Period size: 43 Copynumber: 3.9 Consensus size: 43
87514817 AGCTCGTACA
* * * * *
87514827 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCAATGTCCCAGACAAGGTCTTACACGTAATCACATATCG
* * * ** * *
87514869 ATGCCACTGTCCTAGACAGGGTCTTACACAAAATCATATAACG
1 ATGCCAATGTCCCAGACAAGGTCTTACACGTAATCACATATCG
* * *
87514912 ATGCCAATATCCCAGACAAGGTTTTACACGTAATCACA-ATACA
1 ATGCCAATGTCCCAGACAAGGTCTTACACGTAATCACATAT-CG
* * *
87514955 ATGCCAATGTCCCAGACATGGTATTACATGTAATCACAT
1 ATGCCAATGTCCCAGACAAGGTCTTACACGTAATCACAT
87514994 TTCGGTAATC
Statistics
Matches: 97, Mismatches: 25, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
42 6 0.06
43 91 0.94
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACAAGGTCTTACACGTAATCACATATCG
Found at i:87518171 original size:40 final size:40
Alignment explanation
Indices: 87518116--87518344 Score: 377
Period size: 40 Copynumber: 5.7 Consensus size: 40
87518106 GAGCATTTGA
87518116 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
87518156 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
87518196 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* * *
87518236 AATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGAT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* *
87518276 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* * *
87518316 GATATGTCCGGGTTAAGACCCGAAGGCAA
1 AATATATCCGGGCTAAGACCCGAAGGCAA
87518345 AGGTGTTTGC
Statistics
Matches: 177, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 177 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
Found at i:87524079 original size:29 final size:29
Alignment explanation
Indices: 87524037--87524093 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
87524027 AAGGTAACCC
*
87524037 ACTCACAAAGTCCATTGTTACTCTTTCCT
1 ACTCACAAAGTCCATTGTCACTCTTTCCT
87524066 ACTCACAAAGTCCATTGTCACTCTTTCC
1 ACTCACAAAGTCCATTGTCACTCTTTCC
87524094 CACTTCCATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.25, C:0.33, G:0.07, T:0.35
Consensus pattern (29 bp):
ACTCACAAAGTCCATTGTCACTCTTTCCT
Found at i:87529831 original size:27 final size:27
Alignment explanation
Indices: 87529801--87529978 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
87529791 ATATTGAGTC
* * * *
87529801 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
87529828 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
87529855 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
87529883 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
87529910 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
87529937 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
87529964 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
87529979 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:87529940 original size:82 final size:81
Alignment explanation
Indices: 87529822--87529977 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
87529812 TGCTATATAA
* *
87529822 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
87529887 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
87529904 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
87529968 CACTTAGTGC
65 CACTTAGTGC
87529978 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:87537570 original size:310 final size:311
Alignment explanation
Indices: 87537007--87537626 Score: 1197
Period size: 310 Copynumber: 2.0 Consensus size: 311
87536997 CTCTGTGCCG
* *
87537007 AGAGATATCCCAGTCGTAATGGGAAAAGGTCAGTGTAGTCGACTCCTGTAACATGGGAGACTTTG
1 AGAGATATCCAAGTCGTAATGGGAAAAGGTCAGTGTAGTCGACCCCTGTAACATGGGAGACTTTG
87537072 ACTAATAAACTGTACTAATTTGCCCGACCAAAAATTCTAGAAAAAAATACATAGGTGGGGACATG
66 ACTAATAAACTGTACTAATTTGCCCGACCAAAAATTCTAGAAAAAAATACATAGGTGGGGACATG
*
87537137 AGTCTAGTTTCAGTGAAAAATCACAAAACTGATTTTCGAGTTGTGAAACTCAAGATATGATTTTT
131 AGTCTAGTTTCAGGGAAAAATCACAAAACTGATTTTCGAGTTGTGAAACTCAAGATATGATTTTT
*
87537202 GAAGCGACTAGTACTCAGACTGGGCAGTGTCTGGAAAAATTTTTCAAAGTTTGTTAACATCTCGT
196 GAAGCGACTAGTACTCAGACGGGGCAGTGTCTGGAAAAATTTTTCAAAGTTTGTTAACATCTCGT
87537267 GTCCGACTCCGGTGTCGGTCTCGGGTTCGGGGTGTTACATTAAATTGGTAA
261 GTCCGACTCCGGTGTCGGTCTCGGGTTCGGGGTGTTACATTAAATTGGTAA
87537318 AGAGATATCCAAGTCGTAATGGGAAAAGGTCAGTGTAGTCGACCCCTGTAACATGGGAGACTTTG
1 AGAGATATCCAAGTCGTAATGGGAAAAGGTCAGTGTAGTCGACCCCTGTAACATGGGAGACTTTG
87537383 ACTAATAAACTGTACTAATTTGCCCGACCAAAAATTCTAG-AAAAAATACATAGGTGGGGACATG
66 ACTAATAAACTGTACTAATTTGCCCGACCAAAAATTCTAGAAAAAAATACATAGGTGGGGACATG
87537447 AGTCTAGTTTCAGGGAAAAATCACAAAACTGATTTTCGAGTTGTGAAACTCAAGATATGATTTTT
131 AGTCTAGTTTCAGGGAAAAATCACAAAACTGATTTTCGAGTTGTGAAACTCAAGATATGATTTTT
87537512 GAAGCGACTAGTACTCAGACGGGGCAGTGTCTGGAAAAATTTTTCAAAGTTTGTTAACATCTCGT
196 GAAGCGACTAGTACTCAGACGGGGCAGTGTCTGGAAAAATTTTTCAAAGTTTGTTAACATCTCGT
87537577 GTCCGACTCCGGTGTCGGTCTCGGGTTCGGGGTGTTACATTAAATTGGTA
261 GTCCGACTCCGGTGTCGGTCTCGGGTTCGGGGTGTTACATTAAATTGGTA
87537627 TCAGAGCTAT
Statistics
Matches: 305, Mismatches: 4, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
310 202 0.66
311 103 0.34
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (311 bp):
AGAGATATCCAAGTCGTAATGGGAAAAGGTCAGTGTAGTCGACCCCTGTAACATGGGAGACTTTG
ACTAATAAACTGTACTAATTTGCCCGACCAAAAATTCTAGAAAAAAATACATAGGTGGGGACATG
AGTCTAGTTTCAGGGAAAAATCACAAAACTGATTTTCGAGTTGTGAAACTCAAGATATGATTTTT
GAAGCGACTAGTACTCAGACGGGGCAGTGTCTGGAAAAATTTTTCAAAGTTTGTTAACATCTCGT
GTCCGACTCCGGTGTCGGTCTCGGGTTCGGGGTGTTACATTAAATTGGTAA
Found at i:87546086 original size:28 final size:28
Alignment explanation
Indices: 87546044--87546158 Score: 110
Period size: 29 Copynumber: 4.0 Consensus size: 28
87546034 TACCTATATC
* * *
87546044 TGGCCCACTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
* *
87546072 TGGCCCATTAGGCCCAAAGCACCTGT-ATA
1 TGGCCCATTAGGCCC-AATCACAT-TCATA
*
87546101 TGGCCCATTAGGGCCAAATCACATTTC-TA
1 TGGCCCATTA-GGCCCAATCACA-TTCATA
87546130 TGGCCCGA-TAGGCCCAATCACATTCATA
1 TGGCCC-ATTAGGCCCAATCACATTCATA
87546158 T
1 T
87546159 TCATGCTCAC
Statistics
Matches: 71, Mismatches: 9, Indels: 14
0.76 0.10 0.15
Matches are distributed among these distances:
27 3 0.04
28 27 0.38
29 34 0.48
30 7 0.10
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:87555924 original size:39 final size:40
Alignment explanation
Indices: 87555828--87556011 Score: 186
Period size: 40 Copynumber: 4.7 Consensus size: 40
87555818 TTGAATGATG
*
87555828 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
87555866 ATCCGGACTAAGAT-TCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
* *
87555907 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
87555946 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
87555985 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
87556012 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 13, Indels: 17
0.80 0.08 0.11
Matches are distributed among these distances:
39 52 0.42
40 59 0.48
41 11 0.09
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:87556033 original size:79 final size:79
Alignment explanation
Indices: 87555881--87556044 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
87555871 GACTAAGATT
* ** *
87555881 CGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 CGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAA
*
87555946 TCCGGGTTAAGTCC
66 TCCGGGTTAAATCC
*
87555960 CGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGC
1 CGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-C
* *
87556022 TATATCC-GGTTAAATTC
62 TAAATCCGGGTTAAATCC
87556039 CGAAGG
1 CGAAGG
87556045 TACGTGATTT
Statistics
Matches: 73, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
78 3 0.04
79 45 0.62
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAA
TCCGGGTTAAATCC
Found at i:87558862 original size:21 final size:21
Alignment explanation
Indices: 87558816--87558860 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
87558806 ATACATGAGT
*
87558816 GTTTAATGATAGATTATAAAA
1 GTTTGATGATAGATTATAAAA
*
87558837 GTTTGATGATAG-TTATAGAA
1 GTTTGATGATAGATTATAAAA
87558857 GTTT
1 GTTT
87558861 TGTTAAGTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.38, C:0.00, G:0.20, T:0.42
Consensus pattern (21 bp):
GTTTGATGATAGATTATAAAA
Found at i:87560890 original size:29 final size:29
Alignment explanation
Indices: 87560857--87560915 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
87560847 GACACACGGG
* * *
87560857 TGTGTGTCCCCTGTTTTGTGTAAAAATTT
1 TGTGTGTCCCCTATTTTATGAAAAAATTT
87560886 TGTGTGTCCCCTATTTTATGAAAAAATTT
1 TGTGTGTCCCCTATTTTATGAAAAAATTT
87560915 T
1 T
87560916 CTAAGTGTGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.22, C:0.14, G:0.17, T:0.47
Consensus pattern (29 bp):
TGTGTGTCCCCTATTTTATGAAAAAATTT
Found at i:87563307 original size:27 final size:27
Alignment explanation
Indices: 87563277--87563454 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
87563267 ATATTGAGTC
* * * *
87563277 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
87563304 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
87563331 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
87563359 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
87563386 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
87563413 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
87563440 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
87563455 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:87563416 original size:82 final size:81
Alignment explanation
Indices: 87563298--87563453 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
87563288 TGCTATATAA
* *
87563298 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
87563363 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
87563380 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
87563444 CACTTAGTGC
65 CACTTAGTGC
87563454 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:87571404 original size:13 final size:13
Alignment explanation
Indices: 87571386--87571411 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
87571376 ATGGTTGAAC
87571386 AACACGCCCATGG
1 AACACGCCCATGG
87571399 AACACGCCCATGG
1 AACACGCCCATGG
87571412 GGCTGACCGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.38, G:0.23, T:0.08
Consensus pattern (13 bp):
AACACGCCCATGG
Found at i:87573150 original size:16 final size:16
Alignment explanation
Indices: 87573131--87573162 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
87573121 AATTATTTTA
87573131 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
87573147 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
87573163 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:87573448 original size:50 final size:50
Alignment explanation
Indices: 87573362--87573608 Score: 300
Period size: 50 Copynumber: 4.9 Consensus size: 50
87573352 ACCGAAGCTC
* *
87573362 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTTAACCA
1 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGACTTAACCA
* * **
87573412 TCTGATAGACGTAGTAGCCTGCACTTAGTACTACACATGTGA-TCAAAGTTA
1 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGACT-TAA-CCA
* * * * * * * *
87573463 ACAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
1 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGACTTAACCA
* *
87573513 TCT-AGTACATGTAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCA
1 TCTGA-TACACGTAGTAGCCTGCACTTAGTACTACACATGTGACTTAACCA
*
87573563 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTTA
1 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGACTTA
87573609 CAACAGATCA
Statistics
Matches: 164, Mismatches: 28, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
49 1 0.01
50 124 0.76
51 39 0.24
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (50 bp):
TCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGACTTAACCA
Found at i:87573491 original size:101 final size:100
Alignment explanation
Indices: 87573365--87573608 Score: 312
Period size: 101 Copynumber: 2.4 Consensus size: 100
87573355 GAAGCTCTCT
* *
87573365 GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTTAACCATCT-GATAGACGTAGTAG
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTTAACAATCTAG-TACACGTAGTAG
* **
87573429 CCTGCACTTAGTACTACACATGTGA-TCAAAGTTAACA
65 CCTGCACTTAGTACTACACACGTGACT-AAA-CCAACA
* * * *
87573466 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTAGTACATGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTTAACAATCTAGTACACGTAGTAGC
* * *
87573531 CTGCACTTAGTACTACACACGTGACTTAACCATCT
66 CTGCACTTAGTACTACACACGTGACTAAACCAACA
* * *
87573566 GATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTTA
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTTA
87573609 CAACAGATCA
Statistics
Matches: 124, Mismatches: 17, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
100 40 0.32
101 82 0.66
102 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (100 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTTAACAATCTAGTACACGTAGTAGC
CTGCACTTAGTACTACACACGTGACTAAACCAACA
Found at i:87573981 original size:19 final size:20
Alignment explanation
Indices: 87573953--87573999 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
87573943 AAGAACATGT
87573953 TATATCATCAAAATAATCACA
1 TATAT-ATCAAAATAATCACA
* *
87573974 TA-ATATCAAATTATTCACA
1 TATATATCAAAATAATCACA
87573993 TATATAT
1 TATATAT
87574000 ACTTACAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAAATAATCACA
Found at i:87576596 original size:15 final size:15
Alignment explanation
Indices: 87576576--87576614 Score: 62
Period size: 15 Copynumber: 2.6 Consensus size: 15
87576566 AACCAGGATC
87576576 TCCAAGAT-AGAGAAA
1 TCCAAGATAAG-GAAA
87576591 TCCAAGATAAGGAAA
1 TCCAAGATAAGGAAA
87576606 TCCAAGATA
1 TCCAAGATA
87576615 CAATATCATA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 21 0.91
16 2 0.09
ACGTcount: A:0.51, C:0.15, G:0.18, T:0.15
Consensus pattern (15 bp):
TCCAAGATAAGGAAA
Found at i:87579924 original size:50 final size:50
Alignment explanation
Indices: 87579790--87580134 Score: 295
Period size: 50 Copynumber: 6.9 Consensus size: 50
87579780 ACCGAAGCTC
* * * * * *
87579790 TCTGGTACGCATAGTAACCTGCACTTAGTACTAAACATGTGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAA
* ** *
87579840 TCTAGTACATGTAGTAGCCTGCA-TTAGTACTACACACGTGACTTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAA
* * * * *
87579889 TCTGATACCCATAGTAGCATGCACTTAGTACTACACATGTGA-TCAA-AGTTA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACA---A
* * * * * * *
87579940 ACGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAA
* *
87579990 TCTGGTACACATAGTAGCCTGCACTTAGTACTAAACACGTGCCTTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAA
* ** * * * *
87580040 TCTGATACATGTAGTAACCTGCACTTAGTACTACACATGTGA-TCGAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACT-TAA--CAA
* **
87580092 -CGGGTATGCATAGTAGCCTGCACTTAGTACTACACACGTGACT
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACT
87580135 CACAATGAAT
Statistics
Matches: 231, Mismatches: 54, Indels: 18
0.76 0.18 0.06
Matches are distributed among these distances:
49 42 0.18
50 114 0.49
51 70 0.30
52 4 0.02
53 1 0.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAA
Found at i:87580089 original size:151 final size:150
Alignment explanation
Indices: 87579793--87580127 Score: 517
Period size: 151 Copynumber: 2.2 Consensus size: 150
87579783 GAAGCTCTCT
* * * **
87579793 GGTACGCATAGTAACCTGCACTTAGTACTAAACATGTGACCTATCAATCTAGTACATGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTAGTACACATAGTAGC
* * * *
87579858 CTGCATTAGTACTACACACGTGACTTAACCATCTGATACCCATAGTAGCATGCACTTAGTACTAC
66 CTGCATTAGTACTAAACACGTGACTTAACAATCTGATACACATAGTAACATGCACTTAGTACTAC
87579923 ACATGTGATCAAAGTTAACG
131 ACATGTGATCAAAGTTAACG
*
87579943 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACATAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTAGTACACATAGTAGC
* ** *
87580008 CTGCACTTAGTACTAAACACGTGCCTTAACAATCTGATACATGTAGTAACCTGCACTTAGTACTA
66 CTGCA-TTAGTACTAAACACGTGACTTAACAATCTGATACACATAGTAACATGCACTTAGTACTA
*
87580073 CACATGTGATCGAAGTTAACG
130 CACATGTGATCAAAGTTAACG
*
87580094 GGTATGCATAGTAGCCTGCACTTAGTACTACACA
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACA
87580128 CGTGACTCAC
Statistics
Matches: 168, Mismatches: 16, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
150 64 0.38
151 104 0.62
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.27
Consensus pattern (150 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTAGTACACATAGTAGC
CTGCATTAGTACTAAACACGTGACTTAACAATCTGATACACATAGTAACATGCACTTAGTACTAC
ACATGTGATCAAAGTTAACG
Found at i:87580104 original size:101 final size:100
Alignment explanation
Indices: 87579793--87580131 Score: 269
Period size: 101 Copynumber: 3.4 Consensus size: 100
87579783 GAAGCTCTCT
* * * *
87579793 GGTACGCATAGTAACCTGCACTTAGTACTAAACATGTGACC-TATCAATCT-AGTACATGTAGTA
1 GGTACACATAGTAGCCTGCACTTAGTACTAAACACGTG-CCTTAACAATCTGA-TACATGTAGTA
* * * * * *
87579856 GCCTGCA-TTAGTACTACACACGTGACTTAA-CCATCT
64 ACCTGCACTTAGTACTACACATGCGAC-CAATCAATCG
* * * * * * * * * * ***
87579892 GATACCCATAGTAGCATGCACTTAGTACTACACATGTG-ATCAA-AGTTAACGGGTACGCATAGT
1 GGTACACATAGTAGCCTGCACTTAGTACTAAACACGTGCCTTAACA---ATCTGATACATGTAGT
* * *
87579955 AGCCTGCACTTAGTACTACACATGCGACCTATCAATCT
63 AACCTGCACTTAGTACTACACATGCGACCAATCAATCG
87579993 GGTACACATAGTAGCCTGCACTTAGTACTAAACACGTGCCTTAACAATCTGATACATGTAGTAAC
1 GGTACACATAGTAGCCTGCACTTAGTACTAAACACGTGCCTTAACAATCTGATACATGTAGTAAC
* * *
87580058 CTGCACTTAGTACTACACATGTGATCGAAGTTAA-CG
66 CTGCACTTAGTACTACACATGCGA-CCAA-TCAATCG
** *
87580094 GGTATGCATAGTAGCCTGCACTTAGTACTACACACGTG
1 GGTACACATAGTAGCCTGCACTTAGTACTAAACACGTG
87580132 ACTCACAATG
Statistics
Matches: 188, Mismatches: 41, Indels: 20
0.76 0.16 0.08
Matches are distributed among these distances:
97 1 0.01
98 1 0.01
99 33 0.18
100 53 0.28
101 93 0.49
102 6 0.03
103 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (100 bp):
GGTACACATAGTAGCCTGCACTTAGTACTAAACACGTGCCTTAACAATCTGATACATGTAGTAAC
CTGCACTTAGTACTACACATGCGACCAATCAATCG
Found at i:87580508 original size:20 final size:20
Alignment explanation
Indices: 87580477--87580523 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
87580467 AAGAACATGT
*
87580477 TATATCATCAAAATAATCATA
1 TATAT-ATCAAAATAATCACA
* *
87580498 TATATATCAAATTATTCACA
1 TATATATCAAAATAATCACA
87580518 TATATA
1 TATATA
87580524 AACTTATAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 18 0.78
21 5 0.22
ACGTcount: A:0.49, C:0.13, G:0.00, T:0.38
Consensus pattern (20 bp):
TATATATCAAAATAATCACA
Found at i:87582634 original size:48 final size:46
Alignment explanation
Indices: 87582559--87582733 Score: 176
Period size: 46 Copynumber: 3.7 Consensus size: 46
87582549 AACTCAACAA
* * * *
87582559 GCTGATGCCATGTCTCAGACAGGTCTTACACTAGCTTGTCTATCTCGAG
1 GCTGATG-CATGTCCCAGACATGTCTTACACTAGC-TCTC-ATCTCAAG
* *
87582608 GCTGATGTATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAT
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAG
* * *
87582654 GCCGATGCATGTTCCAGACATGTCTTACACTGGCTCTCA--T-AATG
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAA-G
* *
87582698 TGGTCGATGCATGTCCTAGACATGTCTTACACTAGC
1 -GCT-GATGCATGTCCCAGACATGTCTTACACTAGC
87582734 ACACATATCA
Statistics
Matches: 107, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
43 2 0.02
44 1 0.01
45 1 0.01
46 69 0.64
47 3 0.03
48 24 0.22
49 7 0.07
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (46 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAG
Found at i:87585362 original size:14 final size:16
Alignment explanation
Indices: 87585339--87585370 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
87585329 AGATTCACAT
87585339 ACCAAGATATAA-TCA
1 ACCAAGATATAATTCA
87585354 ACCAA-ATATAATTCA
1 ACCAAGATATAATTCA
87585369 AC
1 AC
87585371 TTATCATCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.53, C:0.22, G:0.03, T:0.22
Consensus pattern (16 bp):
ACCAAGATATAATTCA
Found at i:87588489 original size:45 final size:45
Alignment explanation
Indices: 87588388--87588514 Score: 129
Period size: 45 Copynumber: 2.9 Consensus size: 45
87588378 TTTTCTCAAA
* *
87588388 TCACCGGCATT-TCGCCTGTTAGGCTCG-AGGCCCG-ATATCAGT
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATATCAGT
* *
87588430 TCACCAGCATTATAGCCTGCTAGGCTCGAAGGCCTGAATAGT-A-T
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA-TCAGT
** * *
87588474 CTCACCGGCATTATAGTTTGCTAAGCTCAAAGGCCCGAATA
1 -TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA
87588515 ATCAAGTCAA
Statistics
Matches: 70, Mismatches: 10, Indels: 7
0.80 0.11 0.08
Matches are distributed among these distances:
42 10 0.14
43 14 0.20
44 7 0.10
45 38 0.54
46 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATATCAGT
Found at i:87588892 original size:43 final size:43
Alignment explanation
Indices: 87588844--87588998 Score: 301
Period size: 43 Copynumber: 3.6 Consensus size: 43
87588834 CCGGCATTAC
87588844 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
87588887 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
87588930 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
87588973 GCCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
87588999 TAATACCAGC
Statistics
Matches: 111, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
43 111 1.00
ACGTcount: A:0.30, C:0.34, G:0.26, T:0.10
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:87589042 original size:86 final size:85
Alignment explanation
Indices: 87588844--87589019 Score: 275
Period size: 86 Copynumber: 2.1 Consensus size: 85
87588834 CCGGCATTAC
87588844 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCG
1 GCCTGC-AGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCG
*
87588909 AATACACATCACCGGCACGAA
65 AATACACATCACCAGCACGAA
*
87588930 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCG
1 GCCTGC-AGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCG
* * *
87588995 AATATA-AT-ACCAGCACTAG
65 AATACACATCACCAGCACGAA
87589014 GCCTGC
1 GCCTGC
87589020 GGGATTTATC
Statistics
Matches: 85, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
84 14 0.16
85 2 0.02
86 69 0.81
ACGTcount: A:0.30, C:0.34, G:0.25, T:0.11
Consensus pattern (85 bp):
GCCTGCAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGA
ATACACATCACCAGCACGAA
Found at i:87589045 original size:38 final size:38
Alignment explanation
Indices: 87588991--87589074 Score: 132
Period size: 38 Copynumber: 2.2 Consensus size: 38
87588981 GGCACGAAGG
* * *
87588991 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
87589029 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
87589067 CCCGAATA
1 CCCGAATA
87589075 CACATCAAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.20
Consensus pattern (38 bp):
CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:87592123 original size:28 final size:28
Alignment explanation
Indices: 87592057--87592123 Score: 66
Period size: 28 Copynumber: 2.4 Consensus size: 28
87592047 TTTACTCATG
* * *
87592057 TTTTCCCTCCTTTGTTCCCTTATTTTCC
1 TTTTTCCTCCCTTGTTCCCTTAGTTTCC
*
87592085 TTCTTT-TTCCCTTGTTCCCCTT-GTTTCC
1 TT-TTTCCTCCCTTGTT-CCCTTAGTTTCC
87592113 TTTTTCCTCCC
1 TTTTTCCTCCC
87592124 ATTTGACTTG
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
27 3 0.10
28 21 0.68
29 7 0.23
ACGTcount: A:0.01, C:0.37, G:0.04, T:0.57
Consensus pattern (28 bp):
TTTTTCCTCCCTTGTTCCCTTAGTTTCC
Found at i:87593493 original size:40 final size:40
Alignment explanation
Indices: 87593437--87593612 Score: 133
Period size: 40 Copynumber: 4.4 Consensus size: 40
87593427 CTGCAACACC
* *
87593437 GGTGGCTTGTCTACAATACTGACAGCTTGTCTGTAATATT
1 GGTGGCTTGTCCACAATACTGACAGTTTGTCTGTAATATT
* * * * *
87593477 GGTGGCTTGTCCACAATATTGGCAGTTTGT-TCATAACACT
1 GGTGGCTTGTCCACAATACTGACAGTTTGTCT-GTAATATT
* * * * * *
87593517 AGTGGCTTGTCCATAATACT-AGCAGTTTATCAGCATTATT
1 GGTGGCTTGTCCACAATACTGA-CAGTTTGTCTGTAATATT
* * *
87593557 GGTGGCTTGTCCACAATACT-AGCAATTTATCTGCAATATT
1 GGTGGCTTGTCCACAATACTGA-CAGTTTGTCTGTAATATT
* * *
87593597 GATGGGTTTTCCACAA
1 GGTGGCTTGTCCACAA
87593613 ACTAGTGTGT
Statistics
Matches: 107, Mismatches: 26, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (40 bp):
GGTGGCTTGTCCACAATACTGACAGTTTGTCTGTAATATT
Found at i:87594301 original size:27 final size:27
Alignment explanation
Indices: 87594261--87594658 Score: 395
Period size: 27 Copynumber: 14.9 Consensus size: 27
87594251 TAAATTTTAA
* *
87594261 AAAATGACTG-TTTTTCCCTTATGTGTT
1 AAAATGAC-GATTTTGCCCTTATGTGGT
* *
87594288 AAAATGATGATTTTGCCCTTATGTGAT
1 AAAATGACGATTTTGCCCTTATGTGGT
*
87594315 AAAATGACGATTTTGCCCTTATGTGGC
1 AAAATGACGATTTTGCCCTTATGTGGT
* *
87594342 AAAGTGACTG-TTTT-CCC-T-TGTGTT
1 AAAATGAC-GATTTTGCCCTTATGTGGT
* *
87594366 AAAATGACAATTTTTCCCTTATGTGGT
1 AAAATGACGATTTTGCCCTTATGTGGT
* *
87594393 AAAATGAC-AGTTTTGCCTTTATGTGGC
1 AAAATGACGA-TTTTGCCCTTATGTGGT
* * *
87594420 AAATTGATTG-TTTTGCCCTTATGTGTT
1 AAAATGA-CGATTTTGCCCTTATGTGGT
* * * * *
87594447 AAAATAACGATTTTTCCATTATGAGGC
1 AAAATGACGATTTTGCCCTTATGTGGT
* *
87594474 AAAATGACTATTTTGCCC-T-TGTGTT
1 AAAATGACGATTTTGCCCTTATGTGGT
*
87594499 AAAATGACAGGTTTT-CCCTTATGTGGT
1 AAAATGAC-GATTTTGCCCTTATGTGGT
*
87594526 AAAATGACGGTTTTGCCCTTATGTGGT
1 AAAATGACGATTTTGCCCTTATGTGGT
*
87594553 AAAATGACGGTTTTGCCCTTATGTGGT
1 AAAATGACGATTTTGCCCTTATGTGGT
**
87594580 AAAATGACGATTTTGCCCTTATAAGGT
1 AAAATGACGATTTTGCCCTTATGTGGT
*
87594607 AAAATGACTATTTTGCCCTTATGTGGT
1 AAAATGACGATTTTGCCCTTATGTGGT
** *
87594634 AGGATAACTG-TTTTGCCCTTATGTG
1 AAAATGAC-GATTTTGCCCTTATGTG
87594659 ATGTATGTTT
Statistics
Matches: 308, Mismatches: 48, Indels: 30
0.80 0.12 0.08
Matches are distributed among these distances:
24 15 0.05
25 18 0.06
26 19 0.06
27 255 0.83
28 1 0.00
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40
Consensus pattern (27 bp):
AAAATGACGATTTTGCCCTTATGTGGT
Found at i:87594548 original size:133 final size:132
Alignment explanation
Indices: 87594261--87594626 Score: 518
Period size: 133 Copynumber: 2.8 Consensus size: 132
87594251 TAAATTTTAA
* * *
87594261 AAAATGACTGTTTTTCCCTTATGTGTTAAAATGATGATTTTGCCCTTATGTGATAAAATGACGAT
1 AAAATGACAGTTTTGCCCTTATGTGGTAAAATGATG-TTTTGCCCTTATGTGATAAAATGACGAT
* * * *
87594326 TTTGCCCTTATGTGGCAAAGTGACTGTTTT-CCCTTGTGTTAAAATGACAATTTTTCCCTTATGT
65 TTTGCCCTTATGAGGCAAAATGACTATTTTGCCCTTGTGTTAAAATGACAAGTTTTCCCTTATGT
87594390 GGT
130 GGT
* * * * *
87594393 AAAATGACAGTTTTGCCTTTATGTGGCAAATTGATTGTTTTGCCCTTATGTGTTAAAATAACGAT
1 AAAATGACAGTTTTGCCCTTATGTGGTAAAATGA-TGTTTTGCCCTTATGTGATAAAATGACGAT
* * *
87594458 TTTTCCATTATGAGGCAAAATGACTATTTTGCCCTTGTGTTAAAATGACAGGTTTTCCCTTATGT
65 TTTGCCCTTATGAGGCAAAATGACTATTTTGCCCTTGTGTTAAAATGACAAGTTTTCCCTTATGT
87594523 GGT
130 GGT
* * *
87594526 AAAATGACGGTTTTGCCCTTATGTGGTAAAATGACGGTTTTGCCCTTATGTGGTAAAATGACGAT
1 AAAATGACAGTTTTGCCCTTATGTGGTAAAATGA-TGTTTTGCCCTTATGTGATAAAATGACGAT
* *
87594591 TTTGCCCTTATAAGGTAAAATGACTATTTTGCCCTT
65 TTTGCCCTTATGAGGCAAAATGACTATTTTGCCCTT
87594627 ATGTGGTAGG
Statistics
Matches: 205, Mismatches: 27, Indels: 3
0.87 0.11 0.01
Matches are distributed among these distances:
132 79 0.39
133 126 0.61
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.40
Consensus pattern (132 bp):
AAAATGACAGTTTTGCCCTTATGTGGTAAAATGATGTTTTGCCCTTATGTGATAAAATGACGATT
TTGCCCTTATGAGGCAAAATGACTATTTTGCCCTTGTGTTAAAATGACAAGTTTTCCCTTATGTG
GT
Found at i:87596442 original size:200 final size:211
Alignment explanation
Indices: 87596077--87596459 Score: 504
Period size: 211 Copynumber: 1.8 Consensus size: 211
87596067 GTTGAAGTAA
*
87596077 ACAACAACATTATAATAAAAAAAACATGAGAAAAAGTTCAAAATACAATAGAAACCTACACCACT
1 ACAACAACATTATAATAAAAAAAACATAAGAAAAAGTTCAAAATACAATAGAAACCTACACCACT
* * *
87596142 CCAAACAAACAAAAAAAAAAGAATACAACAAAAGTTCAATTAACCAACAATAATAACAAACCAAA
66 CC--AC-AACAAAAAAAAAAGAACACAACAAAAGCTCAATTAACCAACAACAATAACAAACCAAA
87596207 CCAAACTAATAACAATAACACATCAGTTCAAAAACCATTATAGAATAGTTTAAGTTCCTTCATGA
128 CC--AC-AATAAC-A-AACACATCAGTTCAAAAACCATTATAGAATAGTTTAAGTTCCTTCATGA
87596272 GTCCAAATAAACAACAAAAACAAT
188 GTCCAAATAAACAACAAAAACAAT
* *
87596296 ACAACAACATTGTAAT-AAAAAAACATAAGCAAAAG-TCTAAAATACAATA-AAAGCCTACACCA
1 ACAACAACATTATAATAAAAAAAACATAAGAAAAAGTTC-AAAATACAATAGAAA-CCTACACCA
* *
87596358 GT-C-C-A-AAAAAAAAAAGAACACAACAAAAGCTCAATTATCCAACAACAATAACAAACCAAA-
64 CTCCACAACAAAAAAAAAAGAACACAACAAAAGCTCAATTAACCAACAACAATAACAAACCAAAC
*
87596418 C-C-A-AAC-GA-ACATCAGTTCAAAAACCATTATAGAATAGTTTAA
129 CACAATAACAAACACATCAGTTCAAAAACCATTATAGAATAGTTTAA
87596460 CTTTCTTCTT
Statistics
Matches: 153, Mismatches: 9, Indels: 23
0.83 0.05 0.12
Matches are distributed among these distances:
200 34 0.22
201 1 0.01
204 3 0.02
205 1 0.01
207 1 0.01
210 1 0.01
211 51 0.33
212 1 0.01
214 1 0.01
217 6 0.04
218 38 0.25
219 15 0.10
ACGTcount: A:0.57, C:0.20, G:0.06, T:0.17
Consensus pattern (211 bp):
ACAACAACATTATAATAAAAAAAACATAAGAAAAAGTTCAAAATACAATAGAAACCTACACCACT
CCACAACAAAAAAAAAAGAACACAACAAAAGCTCAATTAACCAACAACAATAACAAACCAAACCA
CAATAACAAACACATCAGTTCAAAAACCATTATAGAATAGTTTAAGTTCCTTCATGAGTCCAAAT
AAACAACAAAAACAAT
Found at i:87603212 original size:28 final size:27
Alignment explanation
Indices: 87603125--87603366 Score: 369
Period size: 27 Copynumber: 8.9 Consensus size: 27
87603115 ACAATAACCA
87603125 AAATACCCCCATAGGGTAAAATGACTG
1 AAATACCCCCATAGGGTAAAATGACTG
*
87603152 AAATACCCCTATAGGGTAAAATGACTG
1 AAATACCCCCATAGGGTAAAATGACTG
* *
87603179 GAATACCCCCATAGGGTAAAATGACCGG
1 AAATACCCCCATAGGGTAAAATGA-CTG
*
87603207 AAATACCCCCATAGGGTAAAATGACCGG
1 AAATACCCCCATAGGGTAAAATGA-CTG
87603235 AAATACCCCCATAGGGTAAAATGACTG
1 AAATACCCCCATAGGGTAAAATGACTG
*
87603262 AAATACCCCCATAGGATAAAATGACTG
1 AAATACCCCCATAGGGTAAAATGACTG
87603289 AAATACCCCCATAGGGTAAAATGACTG
1 AAATACCCCCATAGGGTAAAATGACTG
**
87603316 AAATACCCCTGTAGGGTAAAATGACT-
1 AAATACCCCCATAGGGTAAAATGACTG
* *
87603342 ATAATACCCCTATAAGGTAAAATGA
1 A-AATACCCCCATAGGGTAAAATGA
87603367 TTGTTTTGCC
Statistics
Matches: 201, Mismatches: 12, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
26 1 0.00
27 147 0.73
28 53 0.26
ACGTcount: A:0.41, C:0.21, G:0.19, T:0.19
Consensus pattern (27 bp):
AAATACCCCCATAGGGTAAAATGACTG
Found at i:87603398 original size:25 final size:27
Alignment explanation
Indices: 87603370--87603513 Score: 139
Period size: 27 Copynumber: 5.4 Consensus size: 27
87603360 AAAATGATTG
87603370 TTTTGCCC-T-TGTGTTAAAATGACAA
1 TTTTGCCCTTATGTGTTAAAATGACAA
** *
87603395 TTTTGCCCTTATGTGGCAAAATGACTA
1 TTTTGCCCTTATGTGTTAAAATGACAA
***
87603422 TTTTGCCCTTATGTGTTAAAATGATGG
1 TTTTGCCCTTATGTGTTAAAATGACAA
* ** *
87603449 TTTTGCCCTTATATGGCAAAATGATAA
1 TTTTGCCCTTATGTGTTAAAATGACAA
* * ***
87603476 TTTTGCCCTTATATGATAAAATGATGG
1 TTTTGCCCTTATGTGTTAAAATGACAA
87603503 TTTTGCCCTTA
1 TTTTGCCCTTA
87603514 AATTATAAAC
Statistics
Matches: 100, Mismatches: 17, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
25 8 0.08
26 1 0.01
27 91 0.91
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.41
Consensus pattern (27 bp):
TTTTGCCCTTATGTGTTAAAATGACAA
Found at i:87603422 original size:79 final size:81
Alignment explanation
Indices: 87603333--87603487 Score: 188
Period size: 79 Copynumber: 1.9 Consensus size: 81
87603323 CCTGTAGGGT
* * **
87603333 AAAATGACTATAATACCCCTATAAGGTAAAATGATTGTTTTGCCC-T-TGTGTTAAAATGACAAT
1 AAAATGACTATAATACCCCTATAAGGTAAAATGATGGTTTTGCCCTTATATGGCAAAATGACAAT
87603396 TTTGCCCTTATGTGGC
66 TTTGCCCTTATGTGGC
** * * ** * *
87603412 AAAATGACTATTTTGCCCTTATGTGTTAAAATGATGGTTTTGCCCTTATATGGCAAAATGATAAT
1 AAAATGACTATAATACCCCTATAAGGTAAAATGATGGTTTTGCCCTTATATGGCAAAATGACAAT
87603477 TTTGCCCTTAT
66 TTTGCCCTTAT
87603488 ATGATAAAAT
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
79 37 0.60
80 1 0.02
81 24 0.39
ACGTcount: A:0.30, C:0.15, G:0.16, T:0.38
Consensus pattern (81 bp):
AAAATGACTATAATACCCCTATAAGGTAAAATGATGGTTTTGCCCTTATATGGCAAAATGACAAT
TTTGCCCTTATGTGGC
Found at i:87603453 original size:54 final size:53
Alignment explanation
Indices: 87603360--87603513 Score: 204
Period size: 54 Copynumber: 2.9 Consensus size: 53
87603350 CCTATAAGGT
* *** *
87603360 AAAATGATTGTTTTGCCC-T-TGTGTTAAAATGACAATTTTGCCCTTATGTGGC
1 AAAATGA-TATTTTGCCCTTATGTGTTAAAATGATGGTTTTGCCCTTATATGGC
87603412 AAAATGACTATTTTGCCCTTATGTGTTAAAATGATGGTTTTGCCCTTATATGGC
1 AAAATGA-TATTTTGCCCTTATGTGTTAAAATGATGGTTTTGCCCTTATATGGC
* *
87603466 AAAATGATAATTTTGCCCTTATATGATAAAATGATGGTTTTGCCCTTA
1 AAAATGAT-ATTTTGCCCTTATGTGTTAAAATGATGGTTTTGCCCTTA
87603514 AATTATAAAC
Statistics
Matches: 91, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
52 16 0.18
53 2 0.02
54 73 0.80
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.40
Consensus pattern (53 bp):
AAAATGATATTTTGCCCTTATGTGTTAAAATGATGGTTTTGCCCTTATATGGC
Found at i:87603488 original size:27 final size:27
Alignment explanation
Indices: 87603385--87603513 Score: 143
Period size: 27 Copynumber: 4.8 Consensus size: 27
87603375 CCCTTGTGTT
* *
87603385 AAAATGACAATTTTGCCCTTATGTGGC
1 AAAATGATAATTTTGCCCTTATATGGC
* **
87603412 AAAATGACT-ATTTTGCCCTTATGTGTT
1 AAAATGA-TAATTTTGCCCTTATATGGC
**
87603439 AAAATGATGGTTTTGCCCTTATATGGC
1 AAAATGATAATTTTGCCCTTATATGGC
**
87603466 AAAATGATAATTTTGCCCTTATATGAT
1 AAAATGATAATTTTGCCCTTATATGGC
**
87603493 AAAATGATGGTTTTGCCCTTA
1 AAAATGATAATTTTGCCCTTA
87603514 AATTATAAAC
Statistics
Matches: 87, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
26 1 0.01
27 86 0.99
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39
Consensus pattern (27 bp):
AAAATGATAATTTTGCCCTTATATGGC
Found at i:87603507 original size:81 final size:79
Alignment explanation
Indices: 87603359--87603513 Score: 195
Period size: 81 Copynumber: 1.9 Consensus size: 79
87603349 CCCTATAAGG
* * ** * *
87603359 TAAAATGATTGTTTTGCCCTTGTGTTAAAATGACAATTTTGCCCTTATGTGGCAAAATGACTATT
1 TAAAATGATGGTTTTGCCCTTATGGCAAAATGACAATTTTGCCCTTATATGACAAAATGACTATT
87603424 TTGCCCTTATGTGT
66 TTGCCCTTATGTGT
* *
87603438 TAAAATGATGGTTTTGCCCTTATATGGCAAAATGATAATTTTGCCCTTATATGATAAAATGA-TG
1 TAAAATGATGGTTTTGCCC-T-TATGGCAAAATGACAATTTTGCCCTTATATGACAAAATGACT-
*
87603502 GTTTTGCCCTTA
63 ATTTTGCCCTTA
87603514 AATTATAAAC
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
79 18 0.28
80 2 0.03
81 44 0.69
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (79 bp):
TAAAATGATGGTTTTGCCCTTATGGCAAAATGACAATTTTGCCCTTATATGACAAAATGACTATT
TTGCCCTTATGTGT
Found at i:87603521 original size:27 final size:27
Alignment explanation
Indices: 87603359--87603522 Score: 136
Period size: 27 Copynumber: 6.1 Consensus size: 27
87603349 CCCTATAAGG
* * *
87603359 TAAAATGATTGTTTTGCCC-T-TGTGT
1 TAAAATGATGGTTTTGCCCTTATATGA
*** * *
87603384 TAAAATGACAATTTTGCCCTTATGTGG
1 TAAAATGATGGTTTTGCCCTTATATGA
* * * *
87603411 CAAAATGACT-ATTTTGCCCTTATGTGT
1 TAAAATGA-TGGTTTTGCCCTTATATGA
*
87603438 TAAAATGATGGTTTTGCCCTTATATGG
1 TAAAATGATGGTTTTGCCCTTATATGA
* **
87603465 CAAAATGATAATTTTGCCCTTATATGA
1 TAAAATGATGGTTTTGCCCTTATATGA
* *
87603492 TAAAATGATGGTTTTGCCCTTAAATTA
1 TAAAATGATGGTTTTGCCCTTATATGA
87603519 TAAA
1 TAAA
87603523 CTGCTTACTG
Statistics
Matches: 115, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
25 16 0.14
26 2 0.02
27 97 0.84
ACGTcount: A:0.30, C:0.13, G:0.16, T:0.40
Consensus pattern (27 bp):
TAAAATGATGGTTTTGCCCTTATATGA
Found at i:87610555 original size:79 final size:82
Alignment explanation
Indices: 87610444--87610628 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
87610434 GCTACTCGTT
* *
87610444 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
87610507 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
87610524 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
87610587 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
87610604 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
87610629 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:87610628 original size:40 final size:40
Alignment explanation
Indices: 87610425--87610628 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
87610415 CGGAATTTAA
** *
87610425 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
87610465 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
87610505 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
87610544 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
87610584 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
87610624 CCGGA
1 CCGGA
87610629 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:87630745 original size:37 final size:37
Alignment explanation
Indices: 87630685--87630762 Score: 111
Period size: 37 Copynumber: 2.1 Consensus size: 37
87630675 TTCCAACTAA
* * * * *
87630685 AACATGCCAGATGCTCATAAGAGCTAATCCACTCGAT
1 AACACGCCAAATGCTCATAAGAGCCAATCCACCCAAT
87630722 AACACGCCAAATGCTCATAAGAGCCAATCCACCCAAT
1 AACACGCCAAATGCTCATAAGAGCCAATCCACCCAAT
87630759 AACA
1 AACA
87630763 TGTCAATTAC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.40, C:0.31, G:0.13, T:0.17
Consensus pattern (37 bp):
AACACGCCAAATGCTCATAAGAGCCAATCCACCCAAT
Found at i:87633898 original size:40 final size:40
Alignment explanation
Indices: 87633854--87634077 Score: 308
Period size: 40 Copynumber: 5.6 Consensus size: 40
87633844 AAGTGAATAT
* * * * **
87633854 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTGTTAA
87633894 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
87633934 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
87633974 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * **
87634014 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * *
87634053 AACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATT
87634078 TGAACGAGGA
Statistics
Matches: 171, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 35 0.20
40 136 0.80
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
Found at i:87633952 original size:80 final size:80
Alignment explanation
Indices: 87633815--87634077 Score: 318
Period size: 80 Copynumber: 3.3 Consensus size: 80
87633805 TTGAATGCTG
* * * * *
87633815 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATATCCGGATTAAGAT-CCGAAGGCC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGGCC
*
87633877 TTTGTGCGAGATACTAAA
63 TTTGTGCGAGTTACTAAA
* * *
87633895 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
**
87633960 GTGCGAGTTGTTAAA
66 GTGCGAGTTACTAAA
* * *
87633975 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGG-CATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
87634039 GTGTGAGTTACTAAA
66 GTGCGAGTTACTAAA
* *
87634054 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
87634078 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
79 35 0.22
80 116 0.73
81 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
GTGCGAGTTACTAAA
Found at i:87634029 original size:120 final size:120
Alignment explanation
Indices: 87633815--87634077 Score: 318
Period size: 120 Copynumber: 2.2 Consensus size: 120
87633805 TTGAATGCTG
* * *
87633815 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATT
* **
87633879 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
66 CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* * * *
87633935 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAG-TGAATAAATCCGGATTAAGAT-CCGAAGGCA
* ** * *
87633997 TTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
64 TTCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
87634054 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
87634078 TGAACGAGGA
Statistics
Matches: 122, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
119 34 0.28
120 80 0.66
121 8 0.07
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATT
CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:87638912 original size:73 final size:73
Alignment explanation
Indices: 87638820--87638967 Score: 242
Period size: 73 Copynumber: 2.0 Consensus size: 73
87638810 CAAATTCGTG
* ** *
87638820 AAGCTCAGAAAGTCGATGATGAATTGGTTGCAAAACGGGCTAAGTGTTTTCCGAACGAGGAATCG
1 AAGCCCAGAAAGTCGATGATGAATTGGTTGCAAAACGGGCTAAGTGTGCTCCGAACAAGGAATCG
87638885 GAGTTTCA
66 GAGTTTCA
* *
87638893 AAGCCCAGAAAGTTGATGATGAATTGGTTGCAAAACGGGCTGAGTGTGCTCCGAACAAGGAATCG
1 AAGCCCAGAAAGTCGATGATGAATTGGTTGCAAAACGGGCTAAGTGTGCTCCGAACAAGGAATCG
87638958 GAGTTTCA
66 GAGTTTCA
87638966 AA
1 AA
87638968 TTGATGATGA
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
73 69 1.00
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.23
Consensus pattern (73 bp):
AAGCCCAGAAAGTCGATGATGAATTGGTTGCAAAACGGGCTAAGTGTGCTCCGAACAAGGAATCG
GAGTTTCA
Found at i:87646605 original size:27 final size:27
Alignment explanation
Indices: 87646574--87646751 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
87646564 TAAATTGTAC
87646574 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
87646601 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
87646627 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
87646655 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
87646683 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
87646710 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
87646737 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
87646752 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:87646688 original size:82 final size:81
Alignment explanation
Indices: 87646575--87646730 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
87646565 AAATTGTACA
* *
87646575 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
87646639 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
87646656 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
87646721 TGCGAGTTGA
65 TGCGAATTGA
87646731 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:87646742 original size:82 final size:81
Alignment explanation
Indices: 87646571--87646751 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
87646561 GATTAAATTG
* *
87646571 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
87646636 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
87646652 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
87646716 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
87646734 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
87646752 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:87652677 original size:70 final size:70
Alignment explanation
Indices: 87652536--87652670 Score: 261
Period size: 70 Copynumber: 1.9 Consensus size: 70
87652526 TGTAAATGAG
*
87652536 ATCAACAGATTACCTGTCTAGGCTAAATCCTTTCTTCAACACATGTAGGACCTCATTACACATGT
1 ATCAACAGATTACCTGTCTAGGCTAAATCCTTTCTTCAACACATGCAGGACCTCATTACACATGT
87652601 CAATC
66 CAATC
87652606 ATCAACAGATTACCTGTCTAGGCTAAATCCTTTCTTCAACACATGCAGGACCTCATTACACATGT
1 ATCAACAGATTACCTGTCTAGGCTAAATCCTTTCTTCAACACATGCAGGACCTCATTACACATGT
87652671 TTATCATGGT
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
70 64 1.00
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.30
Consensus pattern (70 bp):
ATCAACAGATTACCTGTCTAGGCTAAATCCTTTCTTCAACACATGCAGGACCTCATTACACATGT
CAATC
Found at i:87657509 original size:17 final size:18
Alignment explanation
Indices: 87657457--87657506 Score: 73
Period size: 18 Copynumber: 2.8 Consensus size: 18
87657447 TTTTAAGAAG
*
87657457 AGTTTTCAATGAAAACAC
1 AGTTTTCGATGAAAACAC
87657475 AGTTTTCGATGAAAACAC
1 AGTTTTCGATGAAAACAC
* *
87657493 GGTTTTCGCTGAAA
1 AGTTTTCGATGAAA
87657507 CACTTCAATG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (18 bp):
AGTTTTCGATGAAAACAC
Found at i:87671067 original size:30 final size:29
Alignment explanation
Indices: 87671033--87671096 Score: 101
Period size: 30 Copynumber: 2.2 Consensus size: 29
87671023 ATGAATCGGA
87671033 AGCTTTGGCACTAAGAGTGCGATTTAAACT
1 AGCTTTGGCACTAAGAGTGCGATTT-AACT
* *
87671063 AGCTTTGGCACTCAGTGTGCGATTTAACT
1 AGCTTTGGCACTAAGAGTGCGATTTAACT
87671092 AGCTT
1 AGCTT
87671097 CGACTACTCA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 9 0.28
30 23 0.72
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (29 bp):
AGCTTTGGCACTAAGAGTGCGATTTAACT
Found at i:87671106 original size:30 final size:30
Alignment explanation
Indices: 87671049--87671106 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
87671039 GGCACTAAGA
* *
87671049 GTGCGATTTAAACTAGCTTTGGCACTCAGT
1 GTGCGATTTAAACTAGCTTCGACACTCAGT
87671079 GTGCGATTT-AACTAGCTTCGACTACTCA
1 GTGCGATTTAAACTAGCTTCGAC-ACTCA
87671107 AGGCATTAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 11 0.44
30 14 0.56
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (30 bp):
GTGCGATTTAAACTAGCTTCGACACTCAGT
Found at i:87678309 original size:30 final size:29
Alignment explanation
Indices: 87678275--87678338 Score: 101
Period size: 30 Copynumber: 2.2 Consensus size: 29
87678265 ATGAATCGTA
*
87678275 AGCTTTGGCACTAAGTCTGCGATTTAAACT
1 AGCTTTGGCACTAAGTCTGCAATTT-AACT
*
87678305 AGCTTTGGCACTAAGTGTGCAATTTAACT
1 AGCTTTGGCACTAAGTCTGCAATTTAACT
87678334 AGCTT
1 AGCTT
87678339 CGGCTACTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 9 0.28
30 23 0.72
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (29 bp):
AGCTTTGGCACTAAGTCTGCAATTTAACT
Found at i:87681157 original size:30 final size:29
Alignment explanation
Indices: 87681123--87681183 Score: 104
Period size: 30 Copynumber: 2.1 Consensus size: 29
87681113 GTAATTAAAG
87681123 TTAAAATAACTTAAACAAAATGCATTCATC
1 TTAAAATAACTTAAACAAAATG-ATTCATC
*
87681153 TTAAAATAACTTAAGCAAAATGATTCATC
1 TTAAAATAACTTAAACAAAATGATTCATC
87681182 TT
1 TT
87681184 CTTCATTTCA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 9 0.30
30 21 0.70
ACGTcount: A:0.48, C:0.15, G:0.05, T:0.33
Consensus pattern (29 bp):
TTAAAATAACTTAAACAAAATGATTCATC
Found at i:87684541 original size:18 final size:18
Alignment explanation
Indices: 87684520--87684576 Score: 69
Period size: 18 Copynumber: 3.2 Consensus size: 18
87684510 TAATAGTTAG
*
87684520 TTATTCGGTAACAATCAA
1 TTATTCAGTAACAATCAA
* * *
87684538 TTATTCAATAATAATCAG
1 TTATTCAGTAACAATCAA
*
87684556 TTATTCAGTATCAATCAA
1 TTATTCAGTAACAATCAA
87684574 TTA
1 TTA
87684577 AATTATTCAG
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.40, C:0.14, G:0.07, T:0.39
Consensus pattern (18 bp):
TTATTCAGTAACAATCAA
Found at i:87684787 original size:53 final size:53
Alignment explanation
Indices: 87684724--87684827 Score: 163
Period size: 53 Copynumber: 2.0 Consensus size: 53
87684714 GCAGTAGAAG
* *
87684724 TACGGTACACAGAGTACCTCATCGGAACAAATCCAAAACTGTAACACTAACAA
1 TACGGTACACAGAGTACCTCATCGAAACAAATCCAAAACAGTAACACTAACAA
* * *
87684777 TACGGTACACAGAGTACCTCATCGAAATAAATCCGAAACAGTAACAGTAAC
1 TACGGTACACAGAGTACCTCATCGAAACAAATCCAAAACAGTAACACTAAC
87684828 GGTAACAGTA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
53 46 1.00
ACGTcount: A:0.43, C:0.25, G:0.14, T:0.17
Consensus pattern (53 bp):
TACGGTACACAGAGTACCTCATCGAAACAAATCCAAAACAGTAACACTAACAA
Found at i:87685936 original size:17 final size:18
Alignment explanation
Indices: 87685900--87685939 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
87685890 CACACCTTCA
87685900 CTTTTCCCTTTTCATCTTT
1 CTTTTCCCTTTT-ATCTTT
*
87685919 CTTTTCTCTTTT-TCTTT
1 CTTTTCCCTTTTATCTTT
87685936 CTTT
1 CTTT
87685940 CTTTCCTCTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 9 0.45
19 11 0.55
ACGTcount: A:0.03, C:0.28, G:0.00, T:0.70
Consensus pattern (18 bp):
CTTTTCCCTTTTATCTTT
Found at i:87687960 original size:411 final size:399
Alignment explanation
Indices: 87687210--87688416 Score: 1745
Period size: 411 Copynumber: 3.0 Consensus size: 399
87687200 GGGTAGTGGC
* * * * *
87687210 AAGCAGCGTATGTGTGTGTTTAGAAGGTCGCAGGTTCGAGATGTATAGTAGGTGAAATTTCCTTT
1 AAGCAGCGTATATGTGTGTTTAGAAGGTCACAGGTTCGAGATGTATAGCAGGCGAAATTTCATTT
* * * * * * *
87687275 TTATTTCGCAAGTAACCGAGGCTTCAGCAGGAATAGATTAAGATTAATTGTGACCCTATTATAGT
66 TTATTTCACAAGTAATCAAGGCTTCGGAAGGAATATATTAAGAGTAATTGTGACCCTATTATAGT
* *
87687340 GTAAAGGAAAGATTGGTGTAGTGGCCAGC-ATAGGATGTGGAGTGTAGGGACAGGAGGAGGTCTG
131 GTAAAGGAAAGATTGGTGTAGTGGCCAGCAACAGGATGTGGAGCGTAGGGACAGGAGGAGGTCTG
* * *
87687404 GAGTTCGAGCTGCTGTGTGCGTGAAGGACCAATTTTGCTGCTTGCATGGGGAAGGAGTTGGAGTC
196 GAGTTCGAGCTGCTGTGTGCGCGAAGGACCAATTTTGCTGCTCGCGTGGGGAAGGAGTTGGAGTC
* * *
87687469 TGATCAGACTCTCTTATCAGTGTGCTGGAACGGTGCAAGGGGTGGATAGGGCTGCTAAACAGTGG
261 TGATCAGACTCTCTTAGCAGCGTGCTGGAACGGTGCAAGGGGTGGATAAGGCTGCTAAACAGTGG
*
87687534 GAAGGAGTTTGAATGAAATTCAAACTGTGCTAAGGGCTAAAATTAATGAGCAAAATAAGGACTTT
326 GAAGGAGTTTGAATGAAATTCAAACTGTGCTAAGGGCTAAAATTAAGGAGCAAAATAAGGACTTT
87687599 GAATATGGA
391 GAATATGGA
*
87687608 AAGCAGCGTATGTGTGTGTTTAGAAGGTCACAGGTTCGAGATGTATAGCAGGCGAAATTTCATTT
1 AAGCAGCGTATATGTGTGTTTAGAAGGTCACAGGTTCGAGATGTATAGCAGGCGAAATTTCATTT
*
87687673 TTATTTCACAAGTCA-CTAAGGCTTCAGCAAGTAAAGGTTAACATTAATTATTAAGAGTAATTGT
66 TTATTTCACAAGTAATC-AAGGCTTC-G---G--AAGG---A-A-T-A-TATTAAGAGTAATTGT
* * *
87687737 GACCCTATTATAGTGTAAA-GAAAGATTGGTGTACTGGCCAGCAACAGGATGTAGAGCATAGGGA
117 GACCCTATTATAGTGTAAAGGAAAGATTGGTGTAGTGGCCAGCAACAGGATGTGGAGCGTAGGGA
* *
87687801 CAGAAGGAGGTCTGGAGTTCGAGCTGCTGTGTGCGCGAAGGACCAATTTTGCTACTCGCGTGGGG
182 CAGGAGGAGGTCTGGAGTTCGAGCTGCTGTGTGCGCGAAGGACCAATTTTGCTGCTCGCGTGGGG
*
87687866 AAGGAGTTGGAGTCTGATCAGACTCTCTTAGCAGCGTGTTGGAACGGTGCAAGGGGTGGATAAGG
247 AAGGAGTTGGAGTCTGATCAGACTCTCTTAGCAGCGTGCTGGAACGGTGCAAGGGGTGGATAAGG
* * * * *
87687931 CTTCTAAACAGTTGGAAGAAGTGTGAATGAAATTCAAACTGTGCTAATGGCTAAAATTAAGGAGC
312 CTGCTAAACAGTGGGAAGGAGTTTGAATGAAATTCAAACTGTGCTAAGGGCTAAAATTAAGGAGC
*
87687996 AAAATAAGGACTTTGAATATGGC
377 AAAATAAGGACTTTGAATATGGA
* * *
87688019 AAGCAGCGTATATGTGTGTTTAGAAGGTCGCAGGTTCGAGATGTATAGCAGGTGAAATTTCTTTT
1 AAGCAGCGTATATGTGTGTTTAGAAGGTCACAGGTTCGAGATGTATAGCAGGCGAAATTTCATTT
* * * **
87688084 TTATTTCGCAAGTAATCGAGGCTTCGGCAGGAATATATTAAGAGTAATTGTGACTTTATTATAGT
66 TTATTTCACAAGTAATCAAGGCTTCGGAAGGAATATATTAAGAGTAATTGTGACCCTATTATAGT
* * * * *
87688149 GTAAATGAAAGATTGGTGCAGTGGCCAGCAGCAGGATGTGGAGCGCAGGGACAGGAGGAGGTCTA
131 GTAAAGGAAAGATTGGTGTAGTGGCCAGCAACAGGATGTGGAGCGTAGGGACAGGAGGAGGTCTG
* *
87688214 AAGTTCGAGCTGCTGTGTGCGCGGAGGACCAATTTTGCTGCTCGCGTGGGGAAGGAGTTGGAGTC
196 GAGTTCGAGCTGCTGTGTGCGCGAAGGACCAATTTTGCTGCTCGCGTGGGGAAGGAGTTGGAGTC
* * * * *
87688279 TGATCAGACTCTCTTAGCGGCATGCTGGAATGGTGCAAGGGGTAGATAAGGCTGCTAAACGGTGG
261 TGATCAGACTCTCTTAGCAGCGTGCTGGAACGGTGCAAGGGGTGGATAAGGCTGCTAAACAGTGG
* * *
87688344 GAAGGAGTTTGAATGAAATACAAATTGTGCTAAGGGTTAAAATTAAGGAGCAAAATAAGGACTTT
326 GAAGGAGTTTGAATGAAATTCAAACTGTGCTAAGGGCTAAAATTAAGGAGCAAAATAAGGACTTT
87688409 GAATATGG
391 GAATATGG
87688417 GAAGGACGGT
Statistics
Matches: 725, Mismatches: 67, Indels: 33
0.88 0.08 0.04
Matches are distributed among these distances:
397 1 0.00
398 114 0.16
399 238 0.33
400 1 0.00
401 1 0.00
402 2 0.00
404 3 0.00
405 3 0.00
407 2 0.00
408 1 0.00
409 1 0.00
410 24 0.03
411 333 0.46
412 1 0.00
ACGTcount: A:0.29, C:0.13, G:0.31, T:0.27
Consensus pattern (399 bp):
AAGCAGCGTATATGTGTGTTTAGAAGGTCACAGGTTCGAGATGTATAGCAGGCGAAATTTCATTT
TTATTTCACAAGTAATCAAGGCTTCGGAAGGAATATATTAAGAGTAATTGTGACCCTATTATAGT
GTAAAGGAAAGATTGGTGTAGTGGCCAGCAACAGGATGTGGAGCGTAGGGACAGGAGGAGGTCTG
GAGTTCGAGCTGCTGTGTGCGCGAAGGACCAATTTTGCTGCTCGCGTGGGGAAGGAGTTGGAGTC
TGATCAGACTCTCTTAGCAGCGTGCTGGAACGGTGCAAGGGGTGGATAAGGCTGCTAAACAGTGG
GAAGGAGTTTGAATGAAATTCAAACTGTGCTAAGGGCTAAAATTAAGGAGCAAAATAAGGACTTT
GAATATGGA
Found at i:87689092 original size:22 final size:22
Alignment explanation
Indices: 87689062--87689107 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
87689052 CAAGGGGACG
*
87689062 TACAACAAAGGGCTTTGGAGGC
1 TACAACAAAAGGCTTTGGAGGC
*
87689084 TACAGCAAAAGGCTTTGGAGGC
1 TACAACAAAAGGCTTTGGAGGC
87689106 TA
1 TA
87689108 ACACGGTTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.33, C:0.17, G:0.30, T:0.20
Consensus pattern (22 bp):
TACAACAAAAGGCTTTGGAGGC
Found at i:87689771 original size:27 final size:27
Alignment explanation
Indices: 87689741--87689861 Score: 183
Period size: 27 Copynumber: 4.5 Consensus size: 27
87689731 ATGGAGGAAG
*
87689741 TGTTCTGGTGGCTATGCTACAAATATC
1 TGTTCTGGTGGCTATGCCACAAATATC
87689768 TGTTCTGGTGGCTATGCCACAAATATC
1 TGTTCTGGTGGCTATGCCACAAATATC
* *
87689795 TATTCTGGTGGCTACGCCACAAATATC
1 TGTTCTGGTGGCTATGCCACAAATATC
87689822 TGTTCTGGTGGC-ACTGCCAC-AATATC
1 TGTTCTGGTGGCTA-TGCCACAAATATC
87689848 TGTATCTGGTGGCT
1 TGT-TCTGGTGGCT
87689862 CTGTCACATT
Statistics
Matches: 86, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
26 10 0.12
27 76 0.88
ACGTcount: A:0.21, C:0.22, G:0.23, T:0.34
Consensus pattern (27 bp):
TGTTCTGGTGGCTATGCCACAAATATC
Found at i:87689869 original size:27 final size:27
Alignment explanation
Indices: 87689741--87689891 Score: 173
Period size: 27 Copynumber: 5.6 Consensus size: 27
87689731 ATGGAGGAAG
* *
87689741 TGTTCTGGTGGCTATGCTACAAATATC
1 TGTTCTGGTGGCTCTGCCACAAATATC
*
87689768 TGTTCTGGTGGCTATGCCACAAATATC
1 TGTTCTGGTGGCTCTGCCACAAATATC
*
87689795 TATTCTGGTGGCTAC-GCCACAAATATC
1 TGTTCTGGTGGCT-CTGCCACAAATATC
*
87689822 TGTTCTGGTGGCACTGCCAC-AATATC
1 TGTTCTGGTGGCTCTGCCACAAATATC
* *
87689848 TGTATCTGGTGGCTCTGTCAC-ATTATC
1 TGT-TCTGGTGGCTCTGCCACAAATATC
* **
87689875 TATTCTGGCAGCTCTGC
1 TGTTCTGGTGGCTCTGC
87689892 TGCAAATTCT
Statistics
Matches: 109, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
26 21 0.19
27 88 0.81
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (27 bp):
TGTTCTGGTGGCTCTGCCACAAATATC
Found at i:87708260 original size:27 final size:27
Alignment explanation
Indices: 87708230--87708291 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
87708220 CCCTAAAATA
* *
87708230 GGTAAAATAACCATAATTCCCTTGTAG
1 GGTAAAATAACCATAATACCCCTGTAG
* ** *
87708257 GGTAAAATGACTGTAATACCCCTGTAT
1 GGTAAAATAACCATAATACCCCTGTAG
87708284 GGTAAAAT
1 GGTAAAAT
87708292 GACGATTATG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (27 bp):
GGTAAAATAACCATAATACCCCTGTAG
Found at i:87708292 original size:27 final size:27
Alignment explanation
Indices: 87708243--87708294 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
87708233 AAAATAACCA
* *
87708243 TAATTCCCTTGTAGGGTAAAATGACTG
1 TAATACCCCTGTAGGGTAAAATGACTG
*
87708270 TAATACCCCTGTATGGTAAAATGAC
1 TAATACCCCTGTAGGGTAAAATGAC
87708295 GATTATGGCC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (27 bp):
TAATACCCCTGTAGGGTAAAATGACTG
Done.