Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 287 of 313
Found at i:87708487 original size:27 final size:27
Alignment explanation
Indices: 87708435--87708516 Score: 94
Period size: 27 Copynumber: 3.0 Consensus size: 27
87708425 GGAAATACAG
* *
87708435 TACTGGTGACTATGTCAC-ATTCACTGT
1 TACTGGTGGCTATGCCACAATT-ACTGT
* *
87708462 TGCTGGTGGCTATGCCACAATTACTGA
1 TACTGGTGGCTATGCCACAATTACTGT
* *
87708489 TACTGGTGGCTTTGCCACACTTACTGT
1 TACTGGTGGCTATGCCACAATTACTGT
87708516 T
1 T
87708517 TTGGCAGCTA
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
27 43 0.93
28 3 0.07
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (27 bp):
TACTGGTGGCTATGCCACAATTACTGT
Found at i:87708744 original size:33 final size:33
Alignment explanation
Indices: 87708665--87708802 Score: 155
Period size: 33 Copynumber: 4.3 Consensus size: 33
87708655 ACTGCATTAC
* * *
87708665 ACTGTACTGATACTATATTGGGCTTAGG-CCAC
1 ACTGTACTGATACTATATAGGGCTAAGGCCCAG
87708697 AC--TA-T--TACTATATAGGGCTAAGGCCCAG
1 ACTGTACTGATACTATATAGGGCTAAGGCCCAG
*
87708725 ACTGTGCTGATACTATATAGGGCTAAGGCCCAG
1 ACTGTACTGATACTATATAGGGCTAAGGCCCAG
* *
87708758 ACTGTACTGATACTGA-ATAGGGCTCAGGCCTAG
1 ACTGTACTGATACT-ATATAGGGCTAAGGCCCAG
87708791 ACTGTTACTGAT
1 ACTG-TACTGAT
87708803 CTAGGCTTAG
Statistics
Matches: 91, Mismatches: 7, Indels: 14
0.81 0.06 0.12
Matches are distributed among these distances:
27 16 0.18
28 5 0.05
29 1 0.01
30 3 0.03
31 1 0.01
32 2 0.02
33 55 0.60
34 8 0.09
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (33 bp):
ACTGTACTGATACTATATAGGGCTAAGGCCCAG
Found at i:87711080 original size:43 final size:43
Alignment explanation
Indices: 87711033--87711126 Score: 111
Period size: 43 Copynumber: 2.2 Consensus size: 43
87711023 CCAAACGTGA
*
87711033 TCTTACATGTAATGACATAT-CGATACC-ATTGTCCCAGACAGGG
1 TCTTACACG-AATGACATATACGATACCGATT-TCCCAGACAGGG
* * *
87711076 TCTTACACGAATTACATATACGATGCCGATTTCCCAGACATGG
1 TCTTACACGAATGACATATACGATACCGATTTCCCAGACAGGG
*
87711119 ACTTACAC
1 TCTTACAC
87711127 ACGATCACAT
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
42 9 0.20
43 32 0.73
44 3 0.07
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.28
Consensus pattern (43 bp):
TCTTACACGAATGACATATACGATACCGATTTCCCAGACAGGG
Found at i:87714461 original size:27 final size:28
Alignment explanation
Indices: 87714400--87714509 Score: 115
Period size: 27 Copynumber: 4.1 Consensus size: 28
87714390 CAGCATGGCT
* *
87714400 ACCAG-AACAGATA-TTGT-G-ACAGTC
1 ACCAGAAACAGATATTTGTGGCAGAGCC
* * *
87714424 ACCAGATACAGATA-TTATGGTAGAGCC
1 ACCAGAAACAGATATTTGTGGCAGAGCC
*
87714451 ACCAGAAACAGATATTTGTGGCAGAACC
1 ACCAGAAACAGATATTTGTGGCAGAGCC
*
87714479 ACCAG-ATCAGATATTTGTGGCAGAGCC
1 ACCAGAAACAGATATTTGTGGCAGAGCC
87714506 ACCA
1 ACCA
87714510 AAATGCTTCC
Statistics
Matches: 72, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
24 5 0.07
25 10 0.14
26 1 0.01
27 41 0.57
28 15 0.21
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (28 bp):
ACCAGAAACAGATATTTGTGGCAGAGCC
Found at i:87714504 original size:55 final size:51
Alignment explanation
Indices: 87714400--87714509 Score: 132
Period size: 55 Copynumber: 2.1 Consensus size: 51
87714390 CAGCATGGCT
* *
87714400 ACCAGAACAGATATTGTGACAGTCACCAGATACAGATATTATGGTAGAGCC
1 ACCAGAACAGATATTGTGACAGCCACCAGATACAGATATTATGGCAGAGCC
* *
87714451 ACCAGAAACAGATATTTGTGGCAGAACCACCAGAT-CAGATATTTGTGGCAGAGCC
1 ACCAG-AACAGATA-TTGTGACAG--CCACCAGATACAGATA-TTATGGCAGAGCC
87714506 ACCA
1 ACCA
87714510 AAATGCTTCC
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
51 5 0.10
52 8 0.16
53 8 0.16
54 6 0.12
55 23 0.46
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (51 bp):
ACCAGAACAGATATTGTGACAGCCACCAGATACAGATATTATGGCAGAGCC
Found at i:87715764 original size:25 final size:22
Alignment explanation
Indices: 87715710--87715764 Score: 56
Period size: 25 Copynumber: 2.3 Consensus size: 22
87715700 TTTCGGCCAG
87715710 AGAAGAAAAGAAGGAGAAAAGA
1 AGAAGAAAAGAAGGAGAAAAGA
* *
87715732 AAATAGAAGAAGAGAGGAGAAGAGA
1 AGA-AGAA-AAGA-AGGAGAAAAGA
87715757 AGGAAGAA
1 A-GAAGAA
87715765 TTCGACACTC
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
22 2 0.08
23 4 0.15
24 4 0.15
25 15 0.58
26 1 0.04
ACGTcount: A:0.64, C:0.00, G:0.35, T:0.02
Consensus pattern (22 bp):
AGAAGAAAAGAAGGAGAAAAGA
Found at i:87722271 original size:27 final size:28
Alignment explanation
Indices: 87722229--87722334 Score: 126
Period size: 27 Copynumber: 3.8 Consensus size: 28
87722219 CTGCCAGAAC
* *
87722229 ATATATTGTGACAGAGTCACCAGATACAG
1 ATAT-TTGTGGCAGAGCCACCAGATACAG
* * * * *
87722258 ATA-CTATGGCAGAGCCACTAGAAATAG
1 ATATTTGTGGCAGAGCCACCAGATACAG
87722285 ATATTTGTGGCAGAGCCACCAGAT-CAG
1 ATATTTGTGGCAGAGCCACCAGATACAG
87722312 ATATTTGTGGCAGAGCCACCAGA
1 ATATTTGTGGCAGAGCCACCAGA
87722335 ACGCTTCCTC
Statistics
Matches: 64, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
27 45 0.70
28 16 0.25
29 3 0.05
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.22
Consensus pattern (28 bp):
ATATTTGTGGCAGAGCCACCAGATACAG
Found at i:87722323 original size:55 final size:56
Alignment explanation
Indices: 87722229--87722335 Score: 146
Period size: 55 Copynumber: 1.9 Consensus size: 56
87722219 CTGCCAGAAC
* *
87722229 ATATATTGTGACAGAGTCACCAGATACAGATACTATGGCAGAGCCACTAGAAATAG
1 ATATATTGTGACAGAGCCACCAGATACAGATACTATGGCAGAGCCACCAGAAATAG
* * *
87722285 ATAT-TTGTGGCAGAGCCACCAGAT-CAGATATTTGTGGCAGAGCCACCAGAA
1 ATATATTGTGACAGAGCCACCAGATACAGATA-CTATGGCAGAGCCACCAGAA
87722336 CGCTTCCTCC
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
54 6 0.13
55 35 0.78
56 4 0.09
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.21
Consensus pattern (56 bp):
ATATATTGTGACAGAGCCACCAGATACAGATACTATGGCAGAGCCACCAGAAATAG
Found at i:87723586 original size:25 final size:22
Alignment explanation
Indices: 87723532--87723586 Score: 56
Period size: 25 Copynumber: 2.3 Consensus size: 22
87723522 TTTTGGCCAG
87723532 AGAAGAAAAGAAGGAGAAAAGA
1 AGAAGAAAAGAAGGAGAAAAGA
* *
87723554 AAATAGAAGAAGAGAGGAGAAGAGA
1 AGA-AGAA-AAGA-AGGAGAAAAGA
87723579 AGGAAGAA
1 A-GAAGAA
87723587 TTCGACACTC
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
22 2 0.08
23 4 0.15
24 4 0.15
25 15 0.58
26 1 0.04
ACGTcount: A:0.64, C:0.00, G:0.35, T:0.02
Consensus pattern (22 bp):
AGAAGAAAAGAAGGAGAAAAGA
Found at i:87727116 original size:13 final size:13
Alignment explanation
Indices: 87727098--87727124 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
87727088 TCACAATTTT
87727098 GGAAGAAATTGCA
1 GGAAGAAATTGCA
87727111 GGAAGAAATTGCA
1 GGAAGAAATTGCA
87727124 G
1 G
87727125 AAAGCTTTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.07, G:0.33, T:0.15
Consensus pattern (13 bp):
GGAAGAAATTGCA
Found at i:87729123 original size:17 final size:18
Alignment explanation
Indices: 87729098--87729137 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
87729088 AGCCTTGGCC
* *
87729098 CAGTGCAGTAACAGT-AA
1 CAGTACAGTAACAATAAA
87729115 CAGTACAGTAACAATAAA
1 CAGTACAGTAACAATAAA
87729133 CAGTA
1 CAGTA
87729138 TGCAAAGTCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.17
Consensus pattern (18 bp):
CAGTACAGTAACAATAAA
Found at i:87729568 original size:27 final size:27
Alignment explanation
Indices: 87729439--87729597 Score: 140
Period size: 27 Copynumber: 5.9 Consensus size: 27
87729429 ACATACATCA
* * *
87729439 CATAGGGGTAAAACAGTCATCTTACCAT
1 CATAAGGGCAAAACAGTCATTTTACC-T
* * *
87729467 -AAAAGGGCAAAATAGTCATTTTACCA
1 CATAAGGGCAAAACAGTCATTTTACCT
* **
87729493 CATAAAGGCAAAACAACCATTTTACCT
1 CATAAGGGCAAAACAGTCATTTTACCT
* * * *
87729520 CATAAGGGCAGAATATTTATTTTACCT
1 CATAAGGGCAAAACAGTCATTTTACCT
* * * *
87729547 TATAAGGGAAAAACAATCATTTCACCT
1 CATAAGGGCAAAACAGTCATTTTACCT
*
87729574 CACAAGGGCAAAACAGTCATTTTA
1 CATAAGGGCAAAACAGTCATTTTA
87729598 TGTAACATCT
Statistics
Matches: 100, Mismatches: 30, Indels: 3
0.75 0.23 0.02
Matches are distributed among these distances:
27 100 1.00
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.26
Consensus pattern (27 bp):
CATAAGGGCAAAACAGTCATTTTACCT
Found at i:87730690 original size:47 final size:47
Alignment explanation
Indices: 87730564--87730775 Score: 280
Period size: 47 Copynumber: 4.7 Consensus size: 47
87730554 GTTATACGTG
* * *
87730564 TAACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACAT
1 TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATACAT
*
87730611 GTAACGTGGTGCTAAGTGGATATGCCATGGTTACATATATTGATACAT
1 -TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATACAT
* *
87730659 TAACGTGGTGCTAAGTGGATATACCACGGTTA-A-ACA-TG------
1 TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATACAT
*
87730697 TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
1 TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATACAT
*
87730744 TAACGTAGTGCTAAGTGGATATGCCACGGTTA
1 TAACGTGGTGCTAAGTGGATATGCCACGGTTA
87730776 TACATGTTAA
Statistics
Matches: 145, Mismatches: 10, Indels: 19
0.83 0.06 0.11
Matches are distributed among these distances:
38 31 0.21
39 1 0.01
40 2 0.01
41 2 0.01
44 2 0.01
45 2 0.01
46 1 0.01
47 61 0.42
48 43 0.30
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (47 bp):
TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATACAT
Found at i:87730710 original size:38 final size:37
Alignment explanation
Indices: 87730655--87730728 Score: 130
Period size: 38 Copynumber: 2.0 Consensus size: 37
87730645 ATATATTGAT
87730655 ACATTAACGTGGTGCTAAGTGGATATACCACGGTTAA
1 ACATTAACGTGGTGCTAAGTGGATATACCACGGTTAA
*
87730692 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
1 ACAT-TAACGTGGTGCTAAGTGGATATACCACGGTTA
87730729 CATATATTGA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
37 4 0.11
38 31 0.89
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (37 bp):
ACATTAACGTGGTGCTAAGTGGATATACCACGGTTAA
Found at i:87730712 original size:85 final size:85
Alignment explanation
Indices: 87730607--87730782 Score: 307
Period size: 85 Copynumber: 2.1 Consensus size: 85
87730597 ACATATTGAT
* *
87730607 ACATGTAACGTGGTGCTAAGTGGATATGCCATGGTTACATATATTGATACATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATACATTAACGTAGTGCTA
87730672 AGTGGATATACCACGGTTAA
66 AGTGGATATACCACGGTTAA
*
87730692 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTAGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATACATTAACGTAGTGCTA
* *
87730757 AGTGGATATGCCACGGTTAT
66 AGTGGATATACCACGGTTAA
87730777 ACATGT
1 ACATGT
87730783 TAATTTGAAA
Statistics
Matches: 86, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 86 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (85 bp):
ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATACATTAACGTAGTGCTA
AGTGGATATACCACGGTTAA
Found at i:87733191 original size:29 final size:28
Alignment explanation
Indices: 87733155--87733232 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
87733145 TCATGAGATT
87733155 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
87733185 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
87733212 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
87733233 GATTATTGAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:87733450 original size:174 final size:174
Alignment explanation
Indices: 87733185--87733686 Score: 905
Period size: 174 Copynumber: 2.9 Consensus size: 174
87733175 AAATTGTACA
*
87733185 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTGAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTGAGCACTATG
87733250 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
*
87733315 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGTATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
87733359 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTGAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTGAGCACTATG
87733424 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
87733489 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
** * *
87733533 GCACTAAGTGTGTGAGTTTTTAGTACATGGCACTAAGTGTGTGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTGAGCACTATG
* * *
87733598 TGTGCGAACTCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
*
87733663 TTTTGGACAGCGGAAATGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
87733687 ACCTTGAGTT
Statistics
Matches: 316, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 316 1.00
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTGAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:87752954 original size:14 final size:15
Alignment explanation
Indices: 87752935--87752978 Score: 54
Period size: 18 Copynumber: 2.8 Consensus size: 15
87752925 TGAAATTGGG
87752935 AAAAGAAAAA-AAAT
1 AAAAGAAAAAGAAAT
87752949 AAAAGAAAAAGAAATT
1 AAAAGAAAAAGAAA-T
87752965 GAAAAAGAAAAAGA
1 --AAAAGAAAAAGA
87752979 GAGTGAGAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
14 10 0.38
15 3 0.12
16 1 0.04
18 12 0.46
ACGTcount: A:0.80, C:0.00, G:0.14, T:0.07
Consensus pattern (15 bp):
AAAAGAAAAAGAAAT
Found at i:87766795 original size:27 final size:27
Alignment explanation
Indices: 87766765--87766942 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
87766755 ATATTGAGTC
* * * *
87766765 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
87766792 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
87766819 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
87766847 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
87766874 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
87766901 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
87766928 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
87766943 GTGCAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:87766904 original size:82 final size:81
Alignment explanation
Indices: 87766786--87766941 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
87766776 TGCTATATAA
* *
87766786 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
87766851 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
87766868 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
87766932 CACTTAGTGC
65 CACTTAGTGC
87766942 TGTGCAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:87768810 original size:40 final size:40
Alignment explanation
Indices: 87768755--87768842 Score: 149
Period size: 40 Copynumber: 2.2 Consensus size: 40
87768745 TATTCGGATG
*
87768755 ATATCCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACT
1 ATATCCGGACTAAGATCCGAAGGCAATTGTGCTAGTTACT
*
87768795 ATATCCGGACTAAGATCCGAAGGCAATTGTGCTAGTTATT
1 ATATCCGGACTAAGATCCGAAGGCAATTGTGCTAGTTACT
*
87768835 ATAACCGG
1 ATATCCGG
87768843 GTTAAGTCCT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (40 bp):
ATATCCGGACTAAGATCCGAAGGCAATTGTGCTAGTTACT
Found at i:87768857 original size:40 final size:41
Alignment explanation
Indices: 87768765--87768907 Score: 147
Period size: 40 Copynumber: 3.6 Consensus size: 41
87768755 ATATCCGGAC
* * * **
87768765 TAAGATCCGAAGGC-ATTTGTGCTAGTTACTATATCCGGAC
1 TAAGATCCGAAGGCAATTCGTGCTAGTTATTATAACCGGGT
87768805 TAAGATCCGAAGGCAATT-GTGCTAGTTATTATAACCGGGT
1 TAAGATCCGAAGGCAATTCGTGCTAGTTATTATAACCGGGT
* *
87768845 TAAG-TCCTGAAGG-AATTCGTG-TGGGTTTTTATAACCGGGT
1 TAAGATCC-GAAGGCAATTCGTGCT-AGTTATTATAACCGGGT
87768885 TAAG-TCCCGAAGGC-ATTCGTGCT
1 TAAGAT-CCGAAGGCAATTCGTGCT
87768908 GGTTGTTACA
Statistics
Matches: 90, Mismatches: 6, Indels: 13
0.83 0.06 0.12
Matches are distributed among these distances:
39 8 0.09
40 76 0.84
41 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (41 bp):
TAAGATCCGAAGGCAATTCGTGCTAGTTATTATAACCGGGT
Found at i:87771290 original size:17 final size:18
Alignment explanation
Indices: 87771248--87771293 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 18
87771238 TATCATTTAC
**
87771248 CATTTATCAAGCATTATT
1 CATTTATCGGGCATTATT
*
87771266 -ATTGATCGGGCATT-TT
1 CATTTATCGGGCATTATT
87771282 CATTTATCGGGC
1 CATTTATCGGGC
87771294 TATACAATTA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
16 2 0.09
17 21 0.91
ACGTcount: A:0.24, C:0.17, G:0.17, T:0.41
Consensus pattern (18 bp):
CATTTATCGGGCATTATT
Found at i:87779785 original size:13 final size:13
Alignment explanation
Indices: 87779767--87779791 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
87779757 TTCAATTCAG
87779767 ATTTTTACAACTC
1 ATTTTTACAACTC
87779780 ATTTTTACAACT
1 ATTTTTACAACT
87779792 TTTACAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.00, T:0.48
Consensus pattern (13 bp):
ATTTTTACAACTC
Found at i:87784372 original size:297 final size:298
Alignment explanation
Indices: 87783831--87784427 Score: 1009
Period size: 297 Copynumber: 2.0 Consensus size: 298
87783821 GGAAATGAGT
* *
87783831 TTGTGATTTATAATGATGTCTCACTGAATGGATTAGGATGTGTATTGATGCAAGAGGGCAAAGTG
1 TTGTGATTTATAATGATGTCTCACTGAATGGACTAGGATGTGTATTGATACAAGAGGGCAAAGTG
* ** * * *
87783896 ATAGCTTATGTCCTGAGACAGTTGAAATTATACCAGAAGAATTATCCGAAGCATGATTTGGAATT
66 ATAGCTTATGCCCCAAGACAGTTGAAATCACACCAGAAGAATTATCCGAAGCATGATTCGGAATT
* *
87783961 AGCTGTCATTGTGTTTGCTTTAAAAATTTGGAGACATCATTTGTACGGTGAGAAATGTCATATCT
131 AGCTGCCATTGTGTTTGCTTTAAAAATTTGAAGACATCATTTGTACGGTGAGAAATGTCATATCT
* * *
87784026 TTACCGATCATAAGAGTTTAAAATACTTGATGTCTCAAAAAGGTTTAAATTTGTGGCAA-GGAGA
196 TTACCGATCATAAGAGTTTAAAATACTTGATGACTCAAAAAGATTTAAATTTGCGGCAACGGAGA
87784090 TGGCTCGAGTTATTGAAGGATTACGAGCTAGTAATTGA
261 TGGCTCGAGTTATTGAAGGATTACGAGCTAGTAATTGA
*
87784128 TTGTGATTTATAGTGATG-CGTCACTGAATGGACTAGGATGTGTATTGATACAAGAGGGCAAAGT
1 TTGTGATTTATAATGATGTC-TCACTGAATGGACTAGGATGTGTATTGATACAAGAGGGCAAAGT
* *
87784192 GATAGCTTATGCCCCAAGACAGTTGAAATCGCACCAGAAGAATTATCCGACGCATGATTCGGAAT
65 GATAGCTTATGCCCCAAGACAGTTGAAATCACACCAGAAGAATTATCCGAAGCATGATTCGGAAT
*
87784257 TAGCTGCCATTGTGTTTGCTTTAAAATTTTGAAGACATCATTTGTACGGTGAGAAATGTCATATC
130 TAGCTGCCATTGTGTTTGCTTTAAAAATTTGAAGACATCATTTGTACGGTGAGAAATGTCATATC
87784322 TTTACCGATCATAAGAGTTTAAAATACTTGATGACTCAAAAAGATTTAAATTTGCGGCAACGGAG
195 TTTACCGATCATAAGAGTTTAAAATACTTGATGACTCAAAAAGATTTAAATTTGCGGCAACGGAG
*
87784387 ATGGTTCGAGTTATTGAAGGATTACGAGCTAGTAATTGA
260 ATGGCTCGAGTTATTGAAGGATTACGAGCTAGTAATTGA
87784426 TT
1 TT
87784428 ACCACCCGGG
Statistics
Matches: 280, Mismatches: 18, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
296 1 0.00
297 235 0.84
298 44 0.16
ACGTcount: A:0.32, C:0.13, G:0.23, T:0.32
Consensus pattern (298 bp):
TTGTGATTTATAATGATGTCTCACTGAATGGACTAGGATGTGTATTGATACAAGAGGGCAAAGTG
ATAGCTTATGCCCCAAGACAGTTGAAATCACACCAGAAGAATTATCCGAAGCATGATTCGGAATT
AGCTGCCATTGTGTTTGCTTTAAAAATTTGAAGACATCATTTGTACGGTGAGAAATGTCATATCT
TTACCGATCATAAGAGTTTAAAATACTTGATGACTCAAAAAGATTTAAATTTGCGGCAACGGAGA
TGGCTCGAGTTATTGAAGGATTACGAGCTAGTAATTGA
Found at i:87789773 original size:47 final size:47
Alignment explanation
Indices: 87789662--87789864 Score: 352
Period size: 47 Copynumber: 4.3 Consensus size: 47
87789652 GCCCTTCGGG
*
87789662 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
87789712 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
87789759 CCTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
87789806 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
87789853 ACTTTCACATTC
1 ACTTTCACATTC
87789865 GAATACTCAT
Statistics
Matches: 148, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
47 110 0.74
49 34 0.23
50 4 0.03
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:87789822 original size:25 final size:25
Alignment explanation
Indices: 87789746--87789824 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
87789736 ATTAGGCCTT
*
87789746 ATCACATATATACCCTTTCACATTC
1 ATCACATATATACACTTTCACATTC
**** ***
87789771 ATCACAT-CGGCCA-TTAGGCATT-
1 ATCACATATATACACTTTCACATTC
87789793 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
87789818 ATCACAT
1 ATCACAT
87789825 CGGCCATTAG
Statistics
Matches: 36, Mismatches: 15, Indels: 6
0.63 0.26 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 7 0.19
25 14 0.39
ACGTcount: A:0.33, C:0.29, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:87799920 original size:41 final size:40
Alignment explanation
Indices: 87799867--87800036 Score: 141
Period size: 41 Copynumber: 4.2 Consensus size: 40
87799857 AGTCCGACTC
*
87799867 TTAG-CACCGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
* * * * *
87799906 TTAGACTACTGGCTCGAAGGCCCTTTG-GAACTAAGTTCGG-
1 TTAGAC-ACTGGCTCAAAAGCCCTTCGAG-ACCAAGCTCGGA
* * * *
87799946 TTATGACACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCAGTTA
1 TTA-GACACTGGCTC--AAAAGCCCTTCGAGACCAAGCTC-G-GA
*
87799991 TTAG-CACAGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
87800030 TTTAGAC
1 -TTAGAC
87800037 CCCGATTAGC
Statistics
Matches: 103, Mismatches: 16, Indels: 22
0.73 0.11 0.16
Matches are distributed among these distances:
39 5 0.05
40 18 0.17
41 49 0.48
42 18 0.17
43 9 0.09
44 1 0.01
45 3 0.03
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
Found at i:87799980 original size:42 final size:40
Alignment explanation
Indices: 87799875--87800016 Score: 142
Period size: 41 Copynumber: 3.5 Consensus size: 40
87799865 TCTTAGCACC
* * *
87799875 GGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTA-GACTACT
1 GGCTCAAAAGCCCTTCGAAACTAAGTTCGG-TTATGAC-ACT
* * * *
87799916 GGCTCGAAGGCCCTTTGGAACTAAGTTCGGTTATGACACT
1 GGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATGACACT
* * *
87799956 GGCTCTAAAAAGCCCTTCGAAACTAAGTTCAGTTATTAGCACA
1 GGCTC--AAAAGCCCTTCGAAACTAAGTTCGGTTATGA-CACT
87799999 GGCTCAAAAGCCCTTCGA
1 GGCTCAAAAGCCCTTCGA
87800017 GACCAAGCTC
Statistics
Matches: 83, Mismatches: 14, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
40 11 0.13
41 39 0.47
42 25 0.30
43 8 0.10
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (40 bp):
GGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATGACACT
Found at i:87809328 original size:27 final size:26
Alignment explanation
Indices: 87809284--87809335 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
87809274 CTCGCTGCAA
*
87809284 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
87809311 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
87809336 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:87812166 original size:42 final size:42
Alignment explanation
Indices: 87812118--87812237 Score: 159
Period size: 43 Copynumber: 2.8 Consensus size: 42
87812108 ATTAGGGTTA
* *
87812118 ATGAGACTACGTGTAAGACTATATCTGGGATATGACATCGAT
1 ATGAGACTACATGTAAGACCATATCTGGGATATGACATCGAT
* * * *
87812160 ATGAGACTTCATGTAAGACCATAGCTGGGCTATTGGCATCGAT
1 ATGAGACTACATGTAAGACCATATCTGGGATA-TGACATCGAT
* *
87812203 ATGAGATTACATGTAAGACCATATTTGGGATATGA
1 ATGAGACTACATGTAAGACCATATCTGGGATATGA
87812238 AATTGGTACG
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 29 0.45
43 36 0.55
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (42 bp):
ATGAGACTACATGTAAGACCATATCTGGGATATGACATCGAT
Found at i:87825070 original size:53 final size:53
Alignment explanation
Indices: 87824990--87825094 Score: 201
Period size: 53 Copynumber: 2.0 Consensus size: 53
87824980 GTTTTTACAA
*
87824990 GCCGGCTTGAGAATCGGGATAGGTCGAAGGCTCGTTCACACTATCTAAAGACT
1 GCCGGCTTGAGAATCGGGATAGGTCGAAGGCTCGTTCACACTATCCAAAGACT
87825043 GCCGGCTTGAGAATCGGGATAGGTCGAAGGCTCGTTCACACTATCCAAAGAC
1 GCCGGCTTGAGAATCGGGATAGGTCGAAGGCTCGTTCACACTATCCAAAGAC
87825095 CTAAATTGGT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.21
Consensus pattern (53 bp):
GCCGGCTTGAGAATCGGGATAGGTCGAAGGCTCGTTCACACTATCCAAAGACT
Found at i:87827417 original size:39 final size:39
Alignment explanation
Indices: 87827300--87828268 Score: 1725
Period size: 39 Copynumber: 24.7 Consensus size: 39
87827290 GCTCCTCGTT
* * *
87827300 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCACA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
87827340 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
87827380 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
87827419 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
87827458 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
87827497 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
87827536 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
87827575 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
87827614 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
87827653 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
87827692 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
87827731 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
87827770 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
87827809 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
87827848 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
87827887 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
87827926 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
87827965 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
87828004 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
87828043 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
87828082 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
87828121 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
87828160 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * *
87828199 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TCGCA
87828240 C-AA-GCCTTCGGGACTTAGCCCGGACATTA
1 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTA
87828269 TTCAAATAAC
Statistics
Matches: 908, Mismatches: 13, Indels: 16
0.97 0.01 0.02
Matches are distributed among these distances:
39 837 0.92
40 60 0.07
41 11 0.01
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:87829000 original size:100 final size:100
Alignment explanation
Indices: 87828827--87829026 Score: 400
Period size: 100 Copynumber: 2.0 Consensus size: 100
87828817 ATACACACTA
87828827 GTAAAGCATCCTCTCCCTTTCCATCAATTTAACACATGCATTGCTCATTAACATGCAAAAGTTAT
1 GTAAAGCATCCTCTCCCTTTCCATCAATTTAACACATGCATTGCTCATTAACATGCAAAAGTTAT
87828892 ATTCGGCCTTAGCACACAACTTGCTAGCCGATTCT
66 ATTCGGCCTTAGCACACAACTTGCTAGCCGATTCT
87828927 GTAAAGCATCCTCTCCCTTTCCATCAATTTAACACATGCATTGCTCATTAACATGCAAAAGTTAT
1 GTAAAGCATCCTCTCCCTTTCCATCAATTTAACACATGCATTGCTCATTAACATGCAAAAGTTAT
87828992 ATTCGGCCTTAGCACACAACTTGCTAGCCGATTCT
66 ATTCGGCCTTAGCACACAACTTGCTAGCCGATTCT
87829027 TCTCCATTTA
Statistics
Matches: 100, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
100 100 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (100 bp):
GTAAAGCATCCTCTCCCTTTCCATCAATTTAACACATGCATTGCTCATTAACATGCAAAAGTTAT
ATTCGGCCTTAGCACACAACTTGCTAGCCGATTCT
Found at i:87843365 original size:39 final size:40
Alignment explanation
Indices: 87843278--87843519 Score: 278
Period size: 40 Copynumber: 6.1 Consensus size: 40
87843268 TGGATGATAA
* * * *
87843278 CCGGGCTAAGTCCCGAAGGCAATTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* *
87843318 CCGAGC-AAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
87843357 CCGGGC-AAGTCCCGAAGGCATTTGTGTGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
87843396 CCGGGCTAAGTCCCAAAGGCATTTGTACGAATTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
87843436 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT
* *
87843477 -CGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
87843516 CCGG
1 CCGG
87843520 TCAAATTCTG
Statistics
Matches: 174, Mismatches: 23, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 72 0.41
40 99 0.57
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:87846034 original size:79 final size:82
Alignment explanation
Indices: 87845923--87846107 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
87845913 GCTACTCGTT
* * *
87845923 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* * *
87845986 GGATTTAGTAAC-TCGCG
65 GGATATAGTAACTTAGCA
* **
87846003 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
87846066 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
87846083 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
87846108 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.60
80 33 0.37
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:87846107 original size:40 final size:40
Alignment explanation
Indices: 87845904--87846107 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
87845894 CGGAATTTAA
** *
87845904 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
87845944 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
87845984 CCGGATTTAGTAACTCGCGCAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
87846023 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
87846063 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
87846103 CCGGA
1 CCGGA
87846108 CATCATTCAA
Statistics
Matches: 137, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 91 0.66
41 12 0.09
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:87853111 original size:40 final size:40
Alignment explanation
Indices: 87853008--87853191 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
87852998 TGGATGATAA
* * * **
87853008 CCGGGCTAAGTCTCGAAGGCAATTGTGCT-AGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTAAAT
87853048 CCGGGC-AAGTCCCGAAGGCATTTGTGTGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAAT
* * * *
87853087 CCAGGCTAAGTCCCGAAGGTATTTGTGCGAATTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAAT
** * *
87853127 CCGGGCTAAGTCCCGAAGGCAAATGTGCGAGTCAC-ACTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTA--AAT
*
87853167 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
87853192 AGCGAGAAGC
Statistics
Matches: 122, Mismatches: 18, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
38 1 0.01
39 32 0.26
40 87 0.71
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAAT
Found at i:87853222 original size:119 final size:119
Alignment explanation
Indices: 87853008--87853226 Score: 264
Period size: 119 Copynumber: 1.8 Consensus size: 119
87852998 TGGATGATAA
* * * * * * *
87853008 CCGGGCTAAGTCTCGAAGGCAATTGTGCTAGTGACTAGTTCCGGGCAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCAAATGTGCGAGTCACTACTACCGGGCAAGTCCCGAAGGCATTTGA
* * *
87853073 GTGAGTTACTAAATCCAGGCTAAGTCCCGAAGGTATTTGTGCGAATTACTAAAT
66 GCGAGTAACTAAATCCAGGCTAAATCCCGAAGGTATTTGTGCGAATTACTAAAT
*
87853127 CCGGGCTAAGTCCCGAAGGCAAATGTGCGAGTCAC-ACTAACCGGGCTATGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCAAATGTGCGAGTCACTACT-ACCGGGC-AAGTCCCGAAGGCATTT
* * *
87853191 GAGCGAG-AAGCTATATCC-GGTTAAATTCCGAAGGTA
64 GAGCGAGTAA-CTAAATCCAGGCTAAATCCCGAAGGTA
87853227 CGTGATTTGG
Statistics
Matches: 83, Mismatches: 14, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
118 2 0.02
119 53 0.64
120 28 0.34
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCAAATGTGCGAGTCACTACTACCGGGCAAGTCCCGAAGGCATTTGA
GCGAGTAACTAAATCCAGGCTAAATCCCGAAGGTATTTGTGCGAATTACTAAAT
Found at i:87853279 original size:15 final size:15
Alignment explanation
Indices: 87853259--87853287 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
87853249 TTGCTGTAAT
87853259 AATTTCAATTAATAC
1 AATTTCAATTAATAC
87853274 AATTTCAATTAATA
1 AATTTCAATTAATA
87853288 TGCTCGTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.10, G:0.00, T:0.41
Consensus pattern (15 bp):
AATTTCAATTAATAC
Found at i:87856842 original size:29 final size:29
Alignment explanation
Indices: 87856783--87856911 Score: 163
Period size: 29 Copynumber: 4.5 Consensus size: 29
87856773 ATAGTAAGTC
* *
87856783 CGCACACTTAGTG-TTATATAATAAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
87856811 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
*
87856840 CGCACCCTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
* * * * *
87856869 TGCACACTTAGTGCTATGCA-ATTTAAACC
1 CGCACACTTAGTGCT-TACATAATCAAACT
87856898 CGCACACTTAGTGC
1 CGCACACTTAGTGC
87856912 CAATCTCATG
Statistics
Matches: 89, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
28 13 0.15
29 73 0.82
30 3 0.03
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCAAACT
Found at i:87861062 original size:49 final size:49
Alignment explanation
Indices: 87860925--87861856 Score: 1656
Period size: 49 Copynumber: 19.0 Consensus size: 49
87860915 CAGCCAAGAG
*
87860925 AGTGTATG--TATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
87860972 AGTGTATGTATATCTGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATGTATA--TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
87861023 AGTGTATATGTGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
87861072 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
87861121 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
87861170 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
87861219 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
87861268 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
87861317 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
87861366 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
87861415 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
87861464 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
87861513 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
87861562 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
87861611 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
87861660 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
87861709 AGTGTATGTATATCTGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATGTATA--TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
87861760 AGTGTATGTATATCTGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATGTATA--TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * *
87861811 AGTGTA--TATGTGTGATAAGGCCTAATAGTCGACGTGATGAATGTGA
1 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
87861857 CGTGAAAACG
Statistics
Matches: 864, Mismatches: 15, Indels: 12
0.97 0.02 0.01
Matches are distributed among these distances:
47 41 0.05
49 686 0.79
51 137 0.16
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.31
Consensus pattern (49 bp):
AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:87866479 original size:122 final size:122
Alignment explanation
Indices: 87866262--87866504 Score: 468
Period size: 122 Copynumber: 2.0 Consensus size: 122
87866252 GGCAGCCACG
87866262 GATCGTCAGAAATCGTATGCGGATTTGAAACGAAAAGACATTGAATATCAGGTGGGAGATAAAGT
1 GATCGTCAGAAATCGTATGCGGATTTGAAACGAAAAGACATTGAATATCAGGTGGGAGATAAAGT
87866327 GTTTCTTAAAGTTTCGCCTTGGAAAAAGGTACTCAGATTTGGCCGAAAGGGCAAGTA
66 GTTTCTTAAAGTTTCGCCTTGGAAAAAGGTACTCAGATTTGGCCGAAAGGGCAAGTA
* *
87866384 GATCGTTAGAAATCGTATGCGGATTTGAAACGATAAGACATTGAATATCAGGTGGGAGATAAAGT
1 GATCGTCAGAAATCGTATGCGGATTTGAAACGAAAAGACATTGAATATCAGGTGGGAGATAAAGT
87866449 GTTTCTTAAAGTTTCGCCTTGGAAAAAGGTACTCAGATTTGGCCGAAAGGGCAAGT
66 GTTTCTTAAAGTTTCGCCTTGGAAAAAGGTACTCAGATTTGGCCGAAAGGGCAAGT
87866505 TGAGTCCGAG
Statistics
Matches: 119, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
122 119 1.00
ACGTcount: A:0.34, C:0.13, G:0.27, T:0.26
Consensus pattern (122 bp):
GATCGTCAGAAATCGTATGCGGATTTGAAACGAAAAGACATTGAATATCAGGTGGGAGATAAAGT
GTTTCTTAAAGTTTCGCCTTGGAAAAAGGTACTCAGATTTGGCCGAAAGGGCAAGTA
Found at i:87871075 original size:42 final size:42
Alignment explanation
Indices: 87870963--87871091 Score: 125
Period size: 42 Copynumber: 3.0 Consensus size: 42
87870953 ATATCGTACA
* * *
87870963 ATGCCAACGTCCCAAACGTGGTCTTACATGTAATCACATGTCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-AATCACATATCG
** * * *
87871006 ATGCC-ACTGTCTTAGATGGGGTATTACACGAATCACATATCG
1 ATGCCAAC-GTCCCAGACGTGGTCTTACACGAATCACATATCG
* * *
87871048 ATGCCAACGTCCCAGACGTTGTCTTACAGGAGAACACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGA-ATCACATATCG
87871091 A
1 A
87871092 AAATCCTATG
Statistics
Matches: 67, Mismatches: 16, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
42 34 0.51
43 33 0.49
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGAATCACATATCG
Found at i:87871414 original size:15 final size:17
Alignment explanation
Indices: 87871390--87871422 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
87871380 TTCTTGATCT
87871390 AAATGTATTCAAA-ATA
1 AAATGTATTCAAATATA
87871406 AAATG-ATTCAAATATA
1 AAATGTATTCAAATATA
87871422 A
1 A
87871423 TTCCATTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.58, C:0.06, G:0.06, T:0.30
Consensus pattern (17 bp):
AAATGTATTCAAATATA
Found at i:87900961 original size:43 final size:42
Alignment explanation
Indices: 87900914--87901007 Score: 127
Period size: 42 Copynumber: 2.2 Consensus size: 42
87900904 TCCCAGACGT
* *
87900914 GGTCTTACATGTAATCAAATATCGATGCC-ACTATCCTAGACAA
1 GGTCTTACAGGAAATCAAATAT-GATGCCGA-TATCCTAGACAA
* *
87900957 GGTCTTACAGGAAATCAAATATGATGCCGATGTCCTAGACAT
1 GGTCTTACAGGAAATCAAATATGATGCCGATATCCTAGACAA
87900999 GGTCTTACA
1 GGTCTTACA
87901008 CATAAATCAC
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
42 25 0.54
43 21 0.46
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (42 bp):
GGTCTTACAGGAAATCAAATATGATGCCGATATCCTAGACAA
Found at i:87900996 original size:42 final size:43
Alignment explanation
Indices: 87900914--87901065 Score: 132
Period size: 43 Copynumber: 3.5 Consensus size: 43
87900904 TCCCAGACGT
* *
87900914 GGTCTTACATGTAATCAAATATCGATGCCACTATCCTAGACAA
1 GGTCTTACAGGAAATCAAATATCGATGCCACTATCCTAGACAA
* *
87900957 GGTCTTACAGGAAATCAAATAT-GATGCCGA-TGTCCTAGACAT
1 GGTCTTACAGGAAATCAAATATCGATGCC-ACTATCCTAGACAA
** * ***
87900999 GGTCTTACACATAAATCACAA-CTCGATGCCAAC-ATCCTAGATGT
1 GGTCTTACA-GGAAATCA-AATATCGATGCC-ACTATCCTAGACAA
* *
87901043 GGTCTTACACGAAATCACATATC
1 GGTCTTACAGGAAATCAAATATC
87901066 AGATCCTATG
Statistics
Matches: 88, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
42 26 0.30
43 36 0.41
44 26 0.30
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (43 bp):
GGTCTTACAGGAAATCAAATATCGATGCCACTATCCTAGACAA
Found at i:87901015 original size:43 final size:43
Alignment explanation
Indices: 87900895--87901065 Score: 131
Period size: 43 Copynumber: 4.0 Consensus size: 43
87900885 AGCTCGTACA
* *
87900895 ATGCCAAC-GTCCCAGACGTGGTCTTACATGT-AATCAAATATCG
1 ATGCC-ACTGTCCTAGACATGGTCTTACA-GTAAATCAAATATCG
* * *
87900938 ATGCCACTATCCTAGACAAGGTCTTACAGGAAATCAAATAT-G
1 ATGCCACTGTCCTAGACATGGTCTTACAGTAAATCAAATATCG
* *
87900980 ATGCCGA-TGTCCTAGACATGGTCTTACACATAAATCACAA-CTCG
1 ATGCC-ACTGTCCTAGACATGGTCTTACA-GTAAATCA-AATATCG
* ** *
87901024 ATGCCAAC-ATCCTAGATGTGGTCTTACACG-AAATCACATATC
1 ATGCC-ACTGTCCTAGACATGGTCTTACA-GTAAATCAAATATC
87901066 AGATCCTATG
Statistics
Matches: 103, Mismatches: 17, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
42 29 0.28
43 47 0.46
44 27 0.26
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.25
Consensus pattern (43 bp):
ATGCCACTGTCCTAGACATGGTCTTACAGTAAATCAAATATCG
Found at i:87906686 original size:47 final size:47
Alignment explanation
Indices: 87906634--87907554 Score: 1585
Period size: 47 Copynumber: 19.6 Consensus size: 47
87906624 GATAATTGTG
* * * * *
87906634 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATACGTGATAAGGCCTAATAGTCGATGTGATGA
* *
87906681 ATGTGAAAGTGTATATACGTGATAAGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATACGTGAT-A-AGGCCTAATAGTCGATGTGATGA
*
87906730 ATGTGAAAGTGTATATATATGTGATAAGG-CT-ATAGTCGATGTGATGA
1 ATGTGAAAGTG--TATATACGTGATAAGGCCTAATAGTCGATGTGATGA
87906777 ATGTGAAAGTGTATATACGTGATAAGGCCTAATAGTCGATGTGATGA
1 ATGTGAAAGTGTATATACGTGATAAGGCCTAATAGTCGATGTGATGA
87906824 ATGTGAAAGTGTATATACGTGATAAGGCCTAATAGTCGATGTGATGA
1 ATGTGAAAGTGTATATACGTGATAAGGCCTAATAGTCGATGTGATGA
87906871 ATGTGAAAGTGTATATACGTGATAAGGCCTAATAGTCGATGTGATGA
1 ATGTGAAAGTGTATATACGTGATAAGGCCTAATAGTCGATGTGATGA
87906918 ATGTGAAAGTGTATATACGTGATAAGGCCTAATAGTCGATGTGATGA
1 ATGTGAAAGTGTATATACGTGATAAGGCCTAATAGTCGATGTGATGA
87906965 ATGTGAAAGTGTATATACGTGATAAGGCCTAATAGTCGATGTGATGA
1 ATGTGAAAGTGTATATACGTGATAAGGCCTAATAGTCGATGTGATGA
87907012 ATGTGAAAGTGTATATACGTGATAAGGCCTAATAGTCGATGTGATGA
1 ATGTGAAAGTGTATATACGTGATAAGGCCTAATAGTCGATGTGATGA
87907059 ATGTGAAAGTGTATATACGTGATAAGGCCTAATAGTCGATGTGATGA
1 ATGTGAAAGTGTATATACGTGATAAGGCCTAATAGTCGATGTGATGA
87907106 ATGTGAAAGTGTATATACGTGATAAGGCCTAATAGTCGATGTGATGA
1 ATGTGAAAGTGTATATACGTGATAAGGCCTAATAGTCGATGTGATGA
87907153 ATGTGAAAGTGTATATACGTGATAAGGCCTAATAGTCGATGTGATGA
1 ATGTGAAAGTGTATATACGTGATAAGGCCTAATAGTCGATGTGATGA
87907200 ATGTGAAAGTGTATATACGTGATAAGGCCTAATAGTCGATGTGATGA
1 ATGTGAAAGTGTATATACGTGATAAGGCCTAATAGTCGATGTGATGA
87907247 ATGTGAAAGTGTATATACGTGATAAGGCCTAATAGTCGATGTGATGA
1 ATGTGAAAGTGTATATACGTGATAAGGCCTAATAGTCGATGTGATGA
87907294 ATGTGAAAGTGTATATACGTGATAAGGCCTAATAGTCGATGTGATGA
1 ATGTGAAAGTGTATATACGTGATAAGGCCTAATAGTCGATGTGATGA
87907341 ATGTGAAAGTGTATATACGTGATAAGGCCTAATAGTCGATGTGATGA
1 ATGTGAAAGTGTATATACGTGATAAGGCCTAATAGTCGATGTGATGA
87907388 ATGTGAAAGTGTATATACGTGATAAGGCCTAATAGTCGATGTGATGA
1 ATGTGAAAGTGTATATACGTGATAAGGCCTAATAGTCGATGTGATGA
* * *
87907435 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATACGTGATAAGGCCTAATAGTCGATGTGATGA
* * * * * * * * * *
87907482 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATACGTGATAAGGCCTAATAGTCGATGTGATGA
* *
87907529 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATACGTGATAAG
87907555 TCCCGAAGGG
Statistics
Matches: 848, Mismatches: 20, Indels: 12
0.96 0.02 0.01
Matches are distributed among these distances:
45 15 0.02
46 2 0.00
47 779 0.92
48 3 0.00
49 37 0.04
50 1 0.00
51 11 0.01
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATACGTGATAAGGCCTAATAGTCGATGTGATGA
Found at i:87909205 original size:46 final size:45
Alignment explanation
Indices: 87909150--87909277 Score: 143
Period size: 46 Copynumber: 2.8 Consensus size: 45
87909140 ATTGAGACGA
*
87909150 GTGCTAGTGTAAAACATGTCTGGGACATGCATCGGCCT-CGAGAT
1 GTGCCAGTGTAAAACATGTCTGGGACATGCATCGGCCTACGAGAT
* * *
87909194 GTAAGCCAGTGTAAGACATCTCTGGGACATGCATCAG-CTACGAGAT
1 GT--GCCAGTGTAAAACATGTCTGGGACATGCATCGGCCTACGAGAT
* * *
87909240 GTGTCATTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GTGCCAGTGTAA-AACATGTCTGGGACAT-GCATCGGC
87909278 ACGGATATGT
Statistics
Matches: 68, Mismatches: 10, Indels: 9
0.78 0.11 0.10
Matches are distributed among these distances:
44 10 0.15
45 15 0.22
46 43 0.63
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (45 bp):
GTGCCAGTGTAAAACATGTCTGGGACATGCATCGGCCTACGAGAT
Found at i:87909307 original size:50 final size:47
Alignment explanation
Indices: 87909110--87909409 Score: 174
Period size: 47 Copynumber: 6.4 Consensus size: 47
87909100 GGGTGTTACA
* * * * * *
87909110 GTAAGACCATTTCTGGGATATGGCATCGGTATTGAGACG-AGTGCTAGT
1 GTAAGACCATGTCTGGGACAT-GCATCGGCA-CGAGATGTAGAGCTAGT
* * *
87909158 GTAA-AACATGTCTGGGACATGCATCGGCCTCGAGATGTA-AGCCAGT
1 GTAAGACCATGTCTGGGACATGCATCGG-CACGAGATGTAGAGCTAGT
* * * *
87909204 GTAAGA-CATCTCTGGGACATGCATCAGCTACGAGATGT-G-TC-ATT
1 GTAAGACCATGTCTGGGACATGCATCGGC-ACGAGATGTAGAGCTAGT
*
87909248 GTAAGACCATGTCTGGGACATGGCATCGGCACGGATATGTGAGAGCTAGT
1 GTAAGACCATGTCTGGGACAT-GCATCGGCAC-GAGATGT-AGAGCTAGT
* * ** * *
87909298 GTAAGACCATGTTTGGGACATGGCAT-TG-ACTTGATGGATGAGCCAGT
1 GTAAGACCATGTCTGGGACAT-GCATCGGCACGAGATGTA-GAGCTAGT
* * * ** *
87909345 GTCAGACCATTTTTGGGACATGGCATC-G-ACTTGATGGATA-AGCCAGT
1 GTAAGACCATGTCTGGGACAT-GCATCGGCACGAGAT-G-TAGAGCTAGT
87909392 GTAAGACCATGTCTGGGA
1 GTAAGACCATGTCTGGGA
87909410 TGTGGCATCG
Statistics
Matches: 204, Mismatches: 32, Indels: 33
0.76 0.12 0.12
Matches are distributed among these distances:
44 8 0.04
45 17 0.08
46 62 0.30
47 79 0.39
48 8 0.04
49 3 0.01
50 27 0.13
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (47 bp):
GTAAGACCATGTCTGGGACATGCATCGGCACGAGATGTAGAGCTAGT
Found at i:87909360 original size:47 final size:47
Alignment explanation
Indices: 87909247--87909419 Score: 197
Period size: 47 Copynumber: 3.6 Consensus size: 47
87909237 GATGTGTCAT
* * *
87909247 TGTAAGACCATGTCTGGGACATGGCATCGGCAC-GGATATGTGA-GAGCTAG
1 TGTAAGACCATGTTTGGGACATGGCATC-G-ACTTG--ATG-GATGAGCCAG
*
87909297 TGTAAGACCATGTTTGGGACATGGCATTGACTTGATGGATGAGCCAG
1 TGTAAGACCATGTTTGGGACATGGCATCGACTTGATGGATGAGCCAG
* * *
87909344 TGTCAGACCATTTTTGGGACATGGCATCGACTTGATGGATAAGCCAG
1 TGTAAGACCATGTTTGGGACATGGCATCGACTTGATGGATGAGCCAG
* **
87909391 TGTAAGACCATGTCTGGGATGTGGCATCG
1 TGTAAGACCATGTTTGGGACATGGCATCG
87909420 GTATTATACC
Statistics
Matches: 108, Mismatches: 13, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
46 2 0.02
47 76 0.70
48 2 0.02
49 2 0.02
50 26 0.24
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.26
Consensus pattern (47 bp):
TGTAAGACCATGTTTGGGACATGGCATCGACTTGATGGATGAGCCAG
Found at i:87914061 original size:48 final size:47
Alignment explanation
Indices: 87913921--87914064 Score: 227
Period size: 47 Copynumber: 3.0 Consensus size: 47
87913911 GTTGAATTTA
* *
87913921 AAGCTTGTTAACTTTTCTCTTAATATTT-TCGGACAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCT-GGACAAGTTACTTAGTT
*
87913968 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGACAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCTGGACAAGTTACTTAGTT
*
87914015 AAGCTTGTTAAATTTGCTCTTATATATTTCTGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTA-ATATTTCTGGACAAGTTACTTAGTT
87914063 AA
1 AA
87914065 AGAAAATTTT
Statistics
Matches: 90, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
47 65 0.72
48 25 0.28
ACGTcount: A:0.28, C:0.13, G:0.14, T:0.45
Consensus pattern (47 bp):
AAGCTTGTTAAATTTGCTCTTAATATTTCTGGACAAGTTACTTAGTT
Found at i:87915802 original size:45 final size:45
Alignment explanation
Indices: 87914860--87915801 Score: 1776
Period size: 45 Copynumber: 20.9 Consensus size: 45
87914850 TATCGTACAG
87914860 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
87914905 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
87914950 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
87914995 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
87915040 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
87915085 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
87915130 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
87915175 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
87915220 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
87915265 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
87915310 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
87915355 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
87915400 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
87915445 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
87915490 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
87915535 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
87915580 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
* * *
87915625 TACTATTCGGGTCTTTGAGCCTAGCAAGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
* *
87915670 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
** * *
87915715 TACTATTCGGGCCTTCAAGCCTAGCAGGCTATAATACCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
* * *
87915760 TACTATTTGAGCCTTCGAGCCTAGCAGGCTATAATGCCGGTG
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTG
87915802 AAATGATATC
Statistics
Matches: 883, Mismatches: 14, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 883 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
Found at i:87915867 original size:41 final size:41
Alignment explanation
Indices: 87915779--87915885 Score: 110
Period size: 41 Copynumber: 2.6 Consensus size: 41
87915769 AGCCTTCGAG
* * * *
87915779 CCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCTTCAAG
1 CCTAGCAGGCGA-AATGCCAGTG-AATGATATCGGGCTTAAAA
*
87915822 CCTAGCAGGCGAAATGCCAGTGAATGA-ATTCGGGTTTAAAA
1 CCTAGCAGGCGAAATGCCAGTGAATGATA-TCGGGCTTAAAA
*
87915863 CCTAGTAGGCCG-AATGCCAGTGA
1 CCTAGCAGG-CGAAATGCCAGTGA
87915886 TTTGATAAGA
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
40 1 0.02
41 33 0.59
42 11 0.20
43 11 0.20
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.21
Consensus pattern (41 bp):
CCTAGCAGGCGAAATGCCAGTGAATGATATCGGGCTTAAAA
Found at i:87922848 original size:320 final size:320
Alignment explanation
Indices: 87922266--87922905 Score: 1271
Period size: 320 Copynumber: 2.0 Consensus size: 320
87922256 TTTGCGAGCA
87922266 ATGAATGTACTCCTGTCCGTTTCACCCGATAATGTGTTGGTAGCAGAATTAAAGGCCAAACCATT
1 ATGAATGTACTCCTGTCCGTTTCACCCGATAATGTGTTGGTAGCAGAATTAAAGGCCAAACCATT
87922331 ATTGATTCATAAATTACGTGAATCCCAGAAAGTTGACGATGAATTGGTTGCTAGACGAGTTGAAT
66 ATTGATTCATAAATTACGTGAATCCCAGAAAGTTGACGATGAATTGGTTGCTAGACGAGTTGAAT
87922396 ATGTTTCAAATGTGGAATCAGAGTTTAAAATTGATGATGACGATTGTTTGAGGTTCAGAAGTCGA
131 ATGTTTCAAATGTGGAATCAGAGTTTAAAATTGATGATGACGATTGTTTGAGGTTCAGAAGTCGA
87922461 CTGTGTGTTCCAAGAAATTCAGAACTTATTTCTTTGATTTTAAGCGAGGCTCATAGTAGCTGCAT
196 CTGTGTGTTCCAAGAAATTCAGAACTTATTTCTTTGATTTTAAGCGAGGCTCATAGTAGCTGCAT
*
87922526 GTCAATCCACCCGGGTAGTACGAAAATGTACAACGATCTGAAACGTCAGTTTTTGTGGCC
261 GTCAATCCACCCGGGTAGTACGAAAATGTACAACGATCTGAAACGTCAGTATTTGTGGCC
87922586 ATGAATGTACTCCTGTCCGTTTCACCCGATAATGTGTTGGTAGCAGAATTAAAGGCCAAACCATT
1 ATGAATGTACTCCTGTCCGTTTCACCCGATAATGTGTTGGTAGCAGAATTAAAGGCCAAACCATT
87922651 ATTGATTCATAAATTACGTGAATCCCAGAAAGTTGACGATGAATTGGTTGCTAGACGAGTTGAAT
66 ATTGATTCATAAATTACGTGAATCCCAGAAAGTTGACGATGAATTGGTTGCTAGACGAGTTGAAT
87922716 ATGTTTCAAATGTGGAATCAGAGTTTAAAATTGATGATGACGATTGTTTGAGGTTCAGAAGTCGA
131 ATGTTTCAAATGTGGAATCAGAGTTTAAAATTGATGATGACGATTGTTTGAGGTTCAGAAGTCGA
87922781 CTGTGTGTTCCAAGAAATTCAGAACTTATTTCTTTGATTTTAAGCGAGGCTCATAGTAGCTGCAT
196 CTGTGTGTTCCAAGAAATTCAGAACTTATTTCTTTGATTTTAAGCGAGGCTCATAGTAGCTGCAT
87922846 GTCAATCCACCCGGGTAGTACGAAAATGTACAACGATCTGAAACGTCAGTATTTGTGGCC
261 GTCAATCCACCCGGGTAGTACGAAAATGTACAACGATCTGAAACGTCAGTATTTGTGGCC
87922906 TGGTATGAAA
Statistics
Matches: 319, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
320 319 1.00
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (320 bp):
ATGAATGTACTCCTGTCCGTTTCACCCGATAATGTGTTGGTAGCAGAATTAAAGGCCAAACCATT
ATTGATTCATAAATTACGTGAATCCCAGAAAGTTGACGATGAATTGGTTGCTAGACGAGTTGAAT
ATGTTTCAAATGTGGAATCAGAGTTTAAAATTGATGATGACGATTGTTTGAGGTTCAGAAGTCGA
CTGTGTGTTCCAAGAAATTCAGAACTTATTTCTTTGATTTTAAGCGAGGCTCATAGTAGCTGCAT
GTCAATCCACCCGGGTAGTACGAAAATGTACAACGATCTGAAACGTCAGTATTTGTGGCC
Found at i:87924440 original size:63 final size:62
Alignment explanation
Indices: 87924354--87924477 Score: 212
Period size: 63 Copynumber: 2.0 Consensus size: 62
87924344 GGTGAGAAAA
*
87924354 CTTGGGTTTGCATGTCAAATTGCCCAAAACTCAAGTAATGGCCGGCCAAGCAAGGATGGTTCC
1 CTTGGGTTTGCATGTCAAATTGCCCAAAACTCAA-TAATGGCCAGCCAAGCAAGGATGGTTCC
* *
87924417 CTTGGGTTTGCATGTCAAATTGCCTAAAACTCAATAGTGGCCAGCCAAGCAAGGATGGTTC
1 CTTGGGTTTGCATGTCAAATTGCCCAAAACTCAATAATGGCCAGCCAAGCAAGGATGGTTC
87924478 TTCCATTAAG
Statistics
Matches: 58, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
62 25 0.43
63 33 0.57
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (62 bp):
CTTGGGTTTGCATGTCAAATTGCCCAAAACTCAATAATGGCCAGCCAAGCAAGGATGGTTCC
Found at i:87927692 original size:16 final size:18
Alignment explanation
Indices: 87927661--87927693 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
87927651 AACTCGTCAC
87927661 ACTATCTATCATTTTGGT
1 ACTATCTATCATTTTGGT
87927679 ACTA-CTAT-ATTTTGG
1 ACTATCTATCATTTTGG
87927694 AGCTAGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.24, C:0.15, G:0.12, T:0.48
Consensus pattern (18 bp):
ACTATCTATCATTTTGGT
Found at i:87933698 original size:47 final size:47
Alignment explanation
Indices: 87933642--87933784 Score: 241
Period size: 47 Copynumber: 3.0 Consensus size: 47
87933632 GTTGAATTTA
87933642 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGACAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGACAAGTTACTTAGTT
* * *
87933689 GAGCTTGTTAAATTTGCTCTTAATATTTCCAGACAATTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGACAAGTTACTTAGTT
* *
87933736 AAGCTTGTTAAATTTGCTCTTATTATTTCCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGACAAGTTACTTAGTT
87933783 AA
1 AA
87933785 AGAAAATTTT
Statistics
Matches: 88, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 88 1.00
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.44
Consensus pattern (47 bp):
AAGCTTGTTAAATTTGCTCTTAATATTTCCGGACAAGTTACTTAGTT
Found at i:87935186 original size:16 final size:18
Alignment explanation
Indices: 87935155--87935188 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
87935145 AACTTGTCAC
87935155 ACTATCTATCATTTTGGA
1 ACTATCTATCATTTTGGA
87935173 ACTA-CTAT-ATTTTGGA
1 ACTATCTATCATTTTGGA
87935189 GCTAATATGG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 4 0.25
18 4 0.25
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.44
Consensus pattern (18 bp):
ACTATCTATCATTTTGGA
Found at i:87935464 original size:23 final size:23
Alignment explanation
Indices: 87935437--87935547 Score: 100
Period size: 23 Copynumber: 4.7 Consensus size: 23
87935427 GTGTTACAAA
* *
87935437 TAAGCTCT-ATTGAGCTAAAATAG
1 TAAGCTCTGA-TGAGCTGAAACAG
* *
87935460 TAAGCTTTGATGAGTTGAAACAG
1 TAAGCTCTGATGAGCTGAAACAG
*
87935483 TAAGCTCTGACGAGCTGAAACAG
1 TAAGCTCTGATGAGCTGAAACAG
* *
87935506 TAAGCTCTTACGAGCTGATATATCAG
1 TAAGCTCTGATGAGCTGA-A-A-CAG
87935532 TAAGCTCAT-ATGAGCT
1 TAAGCTC-TGATGAGCT
87935548 ACGGTGTGTC
Statistics
Matches: 74, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
23 54 0.73
24 2 0.03
25 1 0.01
26 16 0.22
27 1 0.01
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (23 bp):
TAAGCTCTGATGAGCTGAAACAG
Found at i:87937507 original size:27 final size:26
Alignment explanation
Indices: 87937444--87937569 Score: 164
Period size: 27 Copynumber: 4.8 Consensus size: 26
87937434 GCTACCTGAA
* * *
87937444 CCCTCATGTGATAAAATAATGA-TTT
1 CCCTTATGTGATAAAATGACGATTTT
87937469 CCCTTATGTGATAAAATGACGATTTT
1 CCCTTATGTGATAAAATGACGATTTT
*
87937495 GCCCTTATGTGATAAAATGACAAATTTT
1 -CCCTTATGTGATAAAATGAC-GATTTT
*
87937523 CCCTTATGTGATAAAATAACGATTTT
1 CCCTTATGTGATAAAATGACGATTTT
*
87937549 GCCCTTATGTGATAAGATGAC
1 -CCCTTATGTGATAAAATGAC
87937570 CGAAATACCT
Statistics
Matches: 89, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
25 19 0.21
26 8 0.09
27 57 0.64
28 5 0.06
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.36
Consensus pattern (26 bp):
CCCTTATGTGATAAAATGACGATTTT
Found at i:87937531 original size:54 final size:54
Alignment explanation
Indices: 87937466--87937569 Score: 190
Period size: 54 Copynumber: 1.9 Consensus size: 54
87937456 AAAATAATGA
*
87937466 TTTCCCTTATGTGATAAAATGACGATTTTGCCCTTATGTGATAAAATGACAAAT
1 TTTCCCTTATGTGATAAAATAACGATTTTGCCCTTATGTGATAAAATGACAAAT
*
87937520 TTTCCCTTATGTGATAAAATAACGATTTTGCCCTTATGTGATAAGATGAC
1 TTTCCCTTATGTGATAAAATAACGATTTTGCCCTTATGTGATAAAATGAC
87937570 CGAAATACCT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (54 bp):
TTTCCCTTATGTGATAAAATAACGATTTTGCCCTTATGTGATAAAATGACAAAT
Found at i:87961522 original size:18 final size:18
Alignment explanation
Indices: 87961501--87961536 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
87961491 GTGTTAGTAG
87961501 TGATAATAGTTTTTATCT
1 TGATAATAGTTTTTATCT
87961519 TGATAATAGTTTTTATCT
1 TGATAATAGTTTTTATCT
87961537 AAGAAATCAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.06, G:0.11, T:0.56
Consensus pattern (18 bp):
TGATAATAGTTTTTATCT
Found at i:87963159 original size:46 final size:44
Alignment explanation
Indices: 87963106--87963232 Score: 141
Period size: 47 Copynumber: 2.8 Consensus size: 44
87963096 TCATTTGTGT
87963106 GAGCTAGTGTAAAACATGTCTGGGACATGCATCGGCCACATT-ATGA-
1 GAGCTAGTGTAAAACATGTCTGGGACATGCATC-G--ACATTGA-GAC
*
87963152 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGAC
1 GAGCTAGTGTAA-AACATGTCTGGGACAT-GCATCGACATTGAGAC
* *
87963198 GAGTGCCAGTGTAAGACATGTCTGGGACATGCATC
1 GA--GCTAGTGTAAAACATGTCTGGGACATGCATC
87963233 AGCCTCGGGA
Statistics
Matches: 71, Mismatches: 4, Indels: 12
0.82 0.05 0.14
Matches are distributed among these distances:
45 7 0.10
46 20 0.28
47 30 0.42
48 14 0.20
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (44 bp):
GAGCTAGTGTAAAACATGTCTGGGACATGCATCGACATTGAGAC
Found at i:87965423 original size:20 final size:20
Alignment explanation
Indices: 87965398--87965435 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
87965388 GTAACATATA
87965398 TCATGAACTCAGACCACAAC
1 TCATGAACTCAGACCACAAC
* *
87965418 TCATGAGCTCAGATCACA
1 TCATGAACTCAGACCACA
87965436 TAGTTTTGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.32, G:0.13, T:0.18
Consensus pattern (20 bp):
TCATGAACTCAGACCACAAC
Found at i:87967928 original size:36 final size:37
Alignment explanation
Indices: 87967856--87967933 Score: 113
Period size: 36 Copynumber: 2.1 Consensus size: 37
87967846 TTATTACGAA
* * *
87967856 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCAGACATAATCCCCACACGAAGTCATCGG
*
87967893 GTCTTACCCAGACA-AATCCCCACACGTAGTCATCGG
1 GTCTTACCCAGACATAATCCCCACACGAAGTCATCGG
87967929 GTCTT
1 GTCTT
87967934 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 24 0.65
37 13 0.35
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCAGACATAATCCCCACACGAAGTCATCGG
Found at i:87975980 original size:26 final size:27
Alignment explanation
Indices: 87975950--87976004 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
87975940 AGCTTCCAAA
*
87975950 TTGTC-AATACCCTAAGCTATATTTTT
1 TTGTCAAATACCATAAGCTATATTTTT
87975976 TTGTCAAATACCATAAGCTATATTTTT
1 TTGTCAAATACCATAAGCTATATTTTT
87976003 TT
1 TT
87976005 CTTTCTTTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 5 0.19
27 22 0.81
ACGTcount: A:0.29, C:0.16, G:0.07, T:0.47
Consensus pattern (27 bp):
TTGTCAAATACCATAAGCTATATTTTT
Found at i:87989291 original size:17 final size:18
Alignment explanation
Indices: 87989249--87989293 Score: 60
Period size: 17 Copynumber: 2.6 Consensus size: 18
87989239 ATTTGGGCTA
87989249 TGTGGG-CCATATGAGCG
1 TGTGGGCCCATATGAGCG
87989266 TGTGGGCCCATAT-AG-G
1 TGTGGGCCCATATGAGCG
87989282 TCGTGGGCCCAT
1 T-GTGGGCCCAT
87989294 TATCATCGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
16 2 0.08
17 18 0.69
18 6 0.23
ACGTcount: A:0.16, C:0.22, G:0.38, T:0.24
Consensus pattern (18 bp):
TGTGGGCCCATATGAGCG
Found at i:87990573 original size:28 final size:29
Alignment explanation
Indices: 87990533--87990643 Score: 111
Period size: 29 Copynumber: 3.9 Consensus size: 29
87990523 TATATCTGGT
* *
87990533 CCATTAAGCCC-AATCATATTCATATGGC
1 CCATTAGGCCCAAATCACATTCATATGGC
*
87990561 CCATTAGGCCCAAATCACCTGT-ATATGGC
1 CCATTAGGCCCAAATCACAT-TCATATGGC
* * *
87990590 CTATTATGCCCAAATCACATTTATATGGC
1 CCATTAGGCCCAAATCACATTCATATGGC
* * *
87990619 CCGTTAGACCC-AGTCACATTCATAT
1 CCATTAGGCCCAAATCACATTCATAT
87990644 TCATGCTTAC
Statistics
Matches: 68, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
28 23 0.34
29 44 0.65
30 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CCATTAGGCCCAAATCACATTCATATGGC
Found at i:87995339 original size:25 final size:25
Alignment explanation
Indices: 87995301--87995370 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
87995291 AGGAAGTGCT
* *
87995301 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
87995326 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
87995351 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
87995371 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:87995383 original size:24 final size:24
Alignment explanation
Indices: 87995300--87995395 Score: 95
Period size: 25 Copynumber: 3.9 Consensus size: 24
87995290 GAGGAAGTGC
*
87995300 TAAAAGGGCTATGCCCCAGTTTACC
1 TAAAAGGGCTATGCCCCAGTTTA-T
* *
87995325 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTATGCCCCAGTTTAT
* *
87995349 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTATGCCCCAGTTTAT
*
87995373 TAAAAGAGGCTAGGCCTCCAGTT
1 TAAAAG-GGCTATGCC-CCAGTT
87995396 ATATGATAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
23 5 0.08
24 11 0.18
25 43 0.72
26 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (24 bp):
TAAAAGGGCTATGCCCCAGTTTAT
Found at i:87995394 original size:50 final size:50
Alignment explanation
Indices: 87995301--87995395 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
87995291 AGGAAGTGCT
**
87995301 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
* **
87995351 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAG-GGCTAGGCC-CCAGTT
87995396 ATATGATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 5 0.13
49 10 0.26
50 23 0.61
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.24
Consensus pattern (50 bp):
AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:87996932 original size:29 final size:28
Alignment explanation
Indices: 87996875--87996960 Score: 118
Period size: 29 Copynumber: 3.0 Consensus size: 28
87996865 TACCTGTATC
* * *
87996875 TGGCTCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
*
87996903 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
*
87996932 TGGCCCATTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
87996960 T
1 T
87996961 TCATGCTCAC
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
28 25 0.49
29 26 0.51
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:88000701 original size:42 final size:42
Alignment explanation
Indices: 88000649--88000735 Score: 129
Period size: 42 Copynumber: 2.1 Consensus size: 42
88000639 AATTAAAACT
* * *
88000649 ACAAGGCTTTTAATGAACTCTAAACATATGTAACGGTAGTGG
1 ACAAGACTTTTAATGAACTCTAAACATATGTAACGGCAATGG
* *
88000691 ACAAGACTTTTGATGAACTCTAAATATATGTAACGGCAATGG
1 ACAAGACTTTTAATGAACTCTAAACATATGTAACGGCAATGG
88000733 ACA
1 ACA
88000736 GCAGGTTTAG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.28
Consensus pattern (42 bp):
ACAAGACTTTTAATGAACTCTAAACATATGTAACGGCAATGG
Found at i:88003269 original size:18 final size:18
Alignment explanation
Indices: 88003248--88003290 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
88003238 AATCTCACTC
88003248 TCTTTTTCTTTTTCAATT
1 TCTTTTTCTTTTTCAATT
* *
88003266 TCTTGTTCTTTTTCGATT
1 TCTTTTTCTTTTTCAATT
88003284 TCTTTTT
1 TCTTTTT
88003291 ATCTCGTCTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.07, C:0.16, G:0.05, T:0.72
Consensus pattern (18 bp):
TCTTTTTCTTTTTCAATT
Found at i:88004925 original size:35 final size:34
Alignment explanation
Indices: 88004834--88004925 Score: 80
Period size: 35 Copynumber: 2.6 Consensus size: 34
88004824 AGTCAAATAA
*
88004834 AACATCACATATAACCTAAAGT-TCTAATTCAATAG
1 AACATCACATATAACC-AAA-TATCTAATTCAAGAG
* ** * *
88004869 AACATCACATTTGGCCGAATATGC-ATATTCAAGAT
1 AACATCACATATAACCAAATAT-CTA-ATTCAAGAG
88004904 AACATCACATATAACCAAATAT
1 AACATCACATATAACCAAATAT
88004926 ACAAGGTCAA
Statistics
Matches: 44, Mismatches: 10, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
33 1 0.02
34 4 0.09
35 39 0.89
ACGTcount: A:0.45, C:0.21, G:0.08, T:0.27
Consensus pattern (34 bp):
AACATCACATATAACCAAATATCTAATTCAAGAG
Found at i:88004982 original size:35 final size:35
Alignment explanation
Indices: 88004896--88005018 Score: 122
Period size: 35 Copynumber: 3.5 Consensus size: 35
88004886 AATATGCATA
* * * *
88004896 TTCAAGATAACATCACATATAACCAAATATACAAG
1 TTCAATATAACCTCACATATAATCGAATATACAAG
* **
88004931 GTCAATATAAGTTCACATATAATCGAATACT-CAAG
1 TTCAATATAACCTCACATATAATCGAATA-TACAAG
** * *
88004966 TTCAATATAACCTCACATGCAGTCGAATATACAAT
1 TTCAATATAACCTCACATATAATCGAATATACAAG
*
88005001 TTCAATATAAGCTCACAT
1 TTCAATATAACCTCACAT
88005019 GTACTTACCT
Statistics
Matches: 72, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
34 1 0.01
35 70 0.97
36 1 0.01
ACGTcount: A:0.44, C:0.20, G:0.08, T:0.28
Consensus pattern (35 bp):
TTCAATATAACCTCACATATAATCGAATATACAAG
Found at i:88012283 original size:21 final size:22
Alignment explanation
Indices: 88012257--88012314 Score: 84
Period size: 21 Copynumber: 2.7 Consensus size: 22
88012247 TTTCTAATAC
*
88012257 CAAATCATAGTCGAATCGTT-T
1 CAAATCATAGTCGAATCATTAT
88012278 CAAATCACT-GTCGAATCATTAT
1 CAAATCA-TAGTCGAATCATTAT
88012300 CAAATCATAGTCGAA
1 CAAATCATAGTCGAA
88012315 CAAGTTCATG
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
21 18 0.55
22 15 0.45
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (22 bp):
CAAATCATAGTCGAATCATTAT
Found at i:88015264 original size:43 final size:42
Alignment explanation
Indices: 88015167--88015270 Score: 113
Period size: 43 Copynumber: 2.5 Consensus size: 42
88015157 TGACCATGTT
* *
88015167 TGGGACATTGGCATCGTATCTGATTTCATGTAAGACCCTGTC
1 TGGGACATTGGCATCGTATCTGATTACATGTAAGACACTGTC
* * *
88015209 TGAGATAGTGGCATCGATGAT-TGATTACATGTAAGACTAC-GTC
1 TGGGACATTGGCATCG-T-ATCTGATTACATGTAAGAC-ACTGTC
*
88015252 TGGGACATTGGCATTGTAT
1 TGGGACATTGGCATCGTAT
88015271 ATGTTCTCTG
Statistics
Matches: 50, Mismatches: 9, Indels: 7
0.76 0.14 0.11
Matches are distributed among these distances:
41 2 0.04
42 14 0.28
43 31 0.62
44 3 0.06
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (42 bp):
TGGGACATTGGCATCGTATCTGATTACATGTAAGACACTGTC
Found at i:88022773 original size:27 final size:27
Alignment explanation
Indices: 88022742--88022919 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
88022732 TAAATTGTAC
88022742 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
88022769 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
88022795 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
88022823 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
88022851 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
88022878 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
88022905 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
88022920 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:88022856 original size:82 final size:81
Alignment explanation
Indices: 88022743--88022898 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
88022733 AAATTGTACA
* *
88022743 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
88022807 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
88022824 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
88022889 TGCGAGTTGA
65 TGCGAATTGA
88022899 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:88022910 original size:82 final size:81
Alignment explanation
Indices: 88022739--88022919 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
88022729 GATTAAATTG
* *
88022739 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
88022804 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
88022820 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
88022884 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
88022902 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
88022920 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:88030963 original size:27 final size:27
Alignment explanation
Indices: 88030932--88031109 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
88030922 TAAATTGTAC
88030932 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
88030959 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
88030985 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
88031013 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
88031041 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
88031068 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
88031095 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
88031110 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:88031046 original size:82 final size:81
Alignment explanation
Indices: 88030933--88031088 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
88030923 AAATTGTACA
* *
88030933 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
88030997 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
88031014 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
88031079 TGCGAGTTGA
65 TGCGAATTGA
88031089 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:88031100 original size:82 final size:81
Alignment explanation
Indices: 88030929--88031109 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
88030919 GATTAAATTG
* *
88030929 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
88030994 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
88031010 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
88031074 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
88031092 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
88031110 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:88038594 original size:27 final size:27
Alignment explanation
Indices: 88038564--88038741 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
88038554 ATATTGAGTC
* * * *
88038564 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
88038591 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
88038618 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
88038646 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
88038673 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
88038700 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
88038727 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
88038742 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:88038703 original size:82 final size:81
Alignment explanation
Indices: 88038585--88038740 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
88038575 TGCTATATAA
* *
88038585 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
88038650 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
88038667 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
88038731 CACTTAGTGC
65 CACTTAGTGC
88038741 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:88043775 original size:189 final size:189
Alignment explanation
Indices: 88043455--88043832 Score: 747
Period size: 189 Copynumber: 2.0 Consensus size: 189
88043445 TAAATGTTGC
88043455 AAACCTTTGTATTGGAGAGAGCTTAAAGAAAATCAGATTTACAGGGTGGATTTAGTTAAAGAAAT
1 AAACCTTTGTATTGGAGAGAGCTTAAAGAAAATCAGATTTACAGGGTGGATTTAGTTAAAGAAAT
88043520 TGAAGAGAAAGTGAAAGTTATCAGAGATTGCTTGAAAGCAGCTTCAGATAAACAGAAGCCATATG
66 TGAAGAGAAAGTGAAAGTTATCAGAGATTGCTTGAAAGCAGCTTCAGATAAACAGAAGCCATATG
88043585 CAGATTTGAAAAGAAAAGAGATTGAGTATCAAGTTGGTGACAAAGTGTTCTTGAAAGTA
131 CAGATTTGAAAAGAAAAGAGATTGAGTATCAAGTTGGTGACAAAGTGTTCTTGAAAGTA
*
88043644 AAACCTTTGTATTGGAGAGAGCTTAAAGAAAATCAGATTTACAGGGTTGATTTAGTTAAAGAAAT
1 AAACCTTTGTATTGGAGAGAGCTTAAAGAAAATCAGATTTACAGGGTGGATTTAGTTAAAGAAAT
88043709 TGAAGAGAAAGTGAAAGTTATCAGAGATTGCTTGAAAGCAGCTTCAGATAAACAGAAGCCATATG
66 TGAAGAGAAAGTGAAAGTTATCAGAGATTGCTTGAAAGCAGCTTCAGATAAACAGAAGCCATATG
88043774 CAGATTTGAAAAGAAAAGAGATTGAGTATCAAGTTGGTGACAAAGTGTTCTTGAAAGTA
131 CAGATTTGAAAAGAAAAGAGATTGAGTATCAAGTTGGTGACAAAGTGTTCTTGAAAGTA
88043833 TCCCCTTTAG
Statistics
Matches: 188, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
189 188 1.00
ACGTcount: A:0.41, C:0.09, G:0.24, T:0.26
Consensus pattern (189 bp):
AAACCTTTGTATTGGAGAGAGCTTAAAGAAAATCAGATTTACAGGGTGGATTTAGTTAAAGAAAT
TGAAGAGAAAGTGAAAGTTATCAGAGATTGCTTGAAAGCAGCTTCAGATAAACAGAAGCCATATG
CAGATTTGAAAAGAAAAGAGATTGAGTATCAAGTTGGTGACAAAGTGTTCTTGAAAGTA
Found at i:88045640 original size:53 final size:53
Alignment explanation
Indices: 88045463--88045685 Score: 216
Period size: 53 Copynumber: 4.2 Consensus size: 53
88045453 CTTAGGGTTT
* * * *
88045463 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTTATAAGGC
* * * * * * * **
88045517 AAGGAAATCATGTAAGACCCTGTCAAGACATGGCACTGATAAACTACGATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGT-TTATAAGGC
* * *
88045572 AAAGATCCCATGTAAGACCATGCCAATG-CATGGCAATGGTGAGTTTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAA-GACATGGCAATGGTAAGTTTATAAGGC
* * * *
88045625 AAGGATACCATGTAAGACCATGTCAAGACATGCCAATGGTAAGTTTAAAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTTATAAGGC
88045678 AAGG-TACC
1 AAGGATACC
88045686 TGTGTATCCT
Statistics
Matches: 134, Mismatches: 31, Indels: 10
0.77 0.18 0.06
Matches are distributed among these distances:
52 5 0.04
53 55 0.41
54 35 0.26
55 38 0.28
56 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.20
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTTATAAGGC
Found at i:88051260 original size:31 final size:32
Alignment explanation
Indices: 88051227--88051326 Score: 100
Period size: 31 Copynumber: 3.1 Consensus size: 32
88051217 ATATACTCAT
88051227 AAACTAATTTTAAATCATTACTAACACATATA
1 AAACTAATTTTAAATCATTACTAACACATATA
* *
88051259 AAACATAA--TCAAATCA-TATTAA-ACATACTCA
1 AAAC-TAATTTTAAATCATTACTAACACATA-T-A
* *
88051290 TCAACTAATTTTAAACCATTACTAACACATATA
1 -AAACTAATTTTAAATCATTACTAACACATATA
88051323 AAAC
1 AAAC
88051327 ATAACCAAAT
Statistics
Matches: 53, Mismatches: 7, Indels: 16
0.70 0.09 0.21
Matches are distributed among these distances:
29 5 0.09
30 6 0.11
31 11 0.21
32 10 0.19
33 10 0.19
34 6 0.11
35 5 0.09
ACGTcount: A:0.51, C:0.19, G:0.00, T:0.30
Consensus pattern (32 bp):
AAACTAATTTTAAATCATTACTAACACATATA
Found at i:88051299 original size:64 final size:64
Alignment explanation
Indices: 88051210--88051344 Score: 225
Period size: 64 Copynumber: 2.1 Consensus size: 64
88051200 TTTCAACATT
* * *
88051210 TATTCAAATATACTCATAAACTAATTTTAAATCATTACTAACACATATAAAACATAATCAAATCA
1 TATT-AAACATACTCATAAACTAATTTTAAACCATTACTAACACATATAAAACATAACCAAATCA
*
88051275 TATTAAACATACTCATCAACTAATTTTAAACCATTACTAACACATATAAAACATAACCAAATCA
1 TATTAAACATACTCATAAACTAATTTTAAACCATTACTAACACATATAAAACATAACCAAATCA
88051339 TATTAA
1 TATTAA
88051345 CCAAATGTAG
Statistics
Matches: 66, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
64 62 0.94
65 4 0.06
ACGTcount: A:0.50, C:0.19, G:0.00, T:0.31
Consensus pattern (64 bp):
TATTAAACATACTCATAAACTAATTTTAAACCATTACTAACACATATAAAACATAACCAAATCA
Found at i:88053217 original size:21 final size:20
Alignment explanation
Indices: 88053185--88053223 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
88053175 AAAATGTGTG
88053185 AATATATATAAGCTATGGCCA
1 AATATATATAAGCT-TGGCCA
88053206 AATATGAT-TAAGCTTGGC
1 AATAT-ATATAAGCTTGGC
88053224 TATTATATCC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 4 0.24
21 11 0.65
22 2 0.12
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (20 bp):
AATATATATAAGCTTGGCCA
Found at i:88058356 original size:358 final size:358
Alignment explanation
Indices: 88057699--88058429 Score: 1408
Period size: 358 Copynumber: 2.0 Consensus size: 358
88057689 TGACGCAATT
88057699 GTTGGAGGAACCATCAATAATAAAACACCTGAAGATGCTTATGGGTTTATAGAGGAGATGTCACT
1 GTTGGAGGAACCATCAATAATAAAACACCTGAAGATGCTTATGGGTTTATAGAGGAGATGTCACT
88057764 GAATAAATATTAGTGGCAAATCATGAGGACAAAACCAATGAAAACAACCGGTGTTTATAATGTCA
66 GAATAAATATTAGTGGCAAATCATGAGGACAAAACCAATGAAAACAACCGGTGTTTATAATGTCA
88057829 ATTCGGTCACCATGCTCTCTAATCAGGTAGAACTCTTGAATAAGAAAATTGATGATTTTATTAGT
131 ATTCGGTCACCATGCTCTCTAATCAGGTAGAACTCTTGAATAAGAAAATTGATGATTTTATTAGT
* *
88057894 TCTTCACAGGTTCACCCAGTAATGCAGTGTGAAGCAAGTGGAGGTGGATCAAGCAATTCAGAATA
196 TCTTCACAGGTTCACCCAGTAATGCAATGTGAAGCAAATGGAGGTGGATCAAGCAATTCAGAATA
*
88057959 CCAACCTTATGGGCACAACATGGATAACGAGCAGTTAAATTACATCGGTAATAATTCTCGATCTC
261 CCAACCTTATGGCCACAACATGGATAACGAGCAGTTAAATTACATCGGTAATAATTCTCGATCTC
88058024 AAAACAATCCATATAGTAATACTTACAATGCAG
326 AAAACAATCCATATAGTAATACTTACAATGCAG
88058057 GTTGGAGGAACCATCAATAATAAAACACCTGAAGATGCTTATGGGTTTATAGAGGAGATGTCACT
1 GTTGGAGGAACCATCAATAATAAAACACCTGAAGATGCTTATGGGTTTATAGAGGAGATGTCACT
* *
88058122 GAATAAATATTAGTGGCAAGTCATGAGGACAAAACCAATGAAAACAGCCGGTGTTTATAATGTCA
66 GAATAAATATTAGTGGCAAATCATGAGGACAAAACCAATGAAAACAACCGGTGTTTATAATGTCA
88058187 ATTCGGTCACCATGCTCTCTAATCAGGTAGAACTCTTGAATAAGAAAATTGATGATTTTATTAGT
131 ATTCGGTCACCATGCTCTCTAATCAGGTAGAACTCTTGAATAAGAAAATTGATGATTTTATTAGT
88058252 TCTTCACAGGTTCACCCAGTAATGCAATGTGAAGCAAATGGAGGTGGATCAAGCAATTCAGAATA
196 TCTTCACAGGTTCACCCAGTAATGCAATGTGAAGCAAATGGAGGTGGATCAAGCAATTCAGAATA
*
88058317 CCAACCTTATGGCCACAACATGGATAACGAGCAGTTAAATTACATGGGTAATAATTCTCGATCTC
261 CCAACCTTATGGCCACAACATGGATAACGAGCAGTTAAATTACATCGGTAATAATTCTCGATCTC
88058382 AAAACAATCCATATAGTAATACTTACAATGCAG
326 AAAACAATCCATATAGTAATACTTACAATGCAG
88058415 GTTGGAGGAACCATC
1 GTTGGAGGAACCATC
88058430 CAAATTTCTC
Statistics
Matches: 367, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
358 367 1.00
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (358 bp):
GTTGGAGGAACCATCAATAATAAAACACCTGAAGATGCTTATGGGTTTATAGAGGAGATGTCACT
GAATAAATATTAGTGGCAAATCATGAGGACAAAACCAATGAAAACAACCGGTGTTTATAATGTCA
ATTCGGTCACCATGCTCTCTAATCAGGTAGAACTCTTGAATAAGAAAATTGATGATTTTATTAGT
TCTTCACAGGTTCACCCAGTAATGCAATGTGAAGCAAATGGAGGTGGATCAAGCAATTCAGAATA
CCAACCTTATGGCCACAACATGGATAACGAGCAGTTAAATTACATCGGTAATAATTCTCGATCTC
AAAACAATCCATATAGTAATACTTACAATGCAG
Found at i:88073423 original size:114 final size:113
Alignment explanation
Indices: 88073212--88073435 Score: 378
Period size: 114 Copynumber: 2.0 Consensus size: 113
88073202 TACACCTTGT
88073212 GGGGAGACTACTCGACCCACCCAACCACTACACACCACAGAAATTGCAGCGAGGCTGCCAAATAT
1 GGGGAGACTACTCGACCCACCCAACCACTACACACCACAGAAATTGCAGCGAGGCTGCCAAATAT
* *
88073277 TGTGACGAAGTCACCAGATACAGATATTGTGGCTAGGCCACCAGAACA
66 TGTGACGAAGTCACCAGATACAGATATAGTGGCGAGGCCACCAGAACA
* *
88073325 GNGGGAGACTACTCGACCCACCCAACCGCTACACACCACAGAAATTGCAGCGAGGCTGCCAGATA
1 G-GGGAGACTACTCGACCCACCCAACCACTACACACCACAGAAATTGCAGCGAGGCTGCCAAATA
*
88073390 TTGTGACGAAGTCACCAGA-ACGGATATAAGTGGCGAGGCCACCAGA
65 TTGTGACGAAGTCACCAGATACAGATAT-AGTGGCGAGGCCACCAGA
88073436 TTGCAGCGAG
Statistics
Matches: 104, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
113 8 0.08
114 96 0.92
ACGTcount: A:0.33, C:0.29, G:0.24, T:0.14
Consensus pattern (113 bp):
GGGGAGACTACTCGACCCACCCAACCACTACACACCACAGAAATTGCAGCGAGGCTGCCAAATAT
TGTGACGAAGTCACCAGATACAGATATAGTGGCGAGGCCACCAGAACA
Found at i:88081118 original size:40 final size:42
Alignment explanation
Indices: 88081020--88081154 Score: 138
Period size: 40 Copynumber: 3.3 Consensus size: 42
88081010 TATAATCTCA
*
88081020 CACACTAAGTGCC-TTTCATAGCCAAAGCTA-TCTCAACGTCG
1 CACACTAAGTGCCATAT-ATAGCCAAAGCTATTCTCAACGTCG
* * * *
88081061 CACACTAAGTGCTATATATATCCAAAGCTATTC-CAA-TTTG
1 CACACTAAGTGCCATATATAGCCAAAGCTATTCTCAACGTCG
* **
88081101 CACACTAAGTGCCATATATAGCCGAAGCTA-TCTCAA-AACG
1 CACACTAAGTGCCATATATAGCCAAAGCTATTCTCAACGTCG
*
88081141 CACACGAAGTGCCA
1 CACACTAAGTGCCA
88081155 AACATAGTAG
Statistics
Matches: 79, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
39 2 0.03
40 46 0.58
41 27 0.34
42 4 0.05
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (42 bp):
CACACTAAGTGCCATATATAGCCAAAGCTATTCTCAACGTCG
Found at i:88084036 original size:12 final size:12
Alignment explanation
Indices: 88084019--88084054 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
88084009 AATTTAGTCC
88084019 AAAACACACTTT
1 AAAACACACTTT
88084031 AAAACACACTTT
1 AAAACACACTTT
88084043 AAAACACA-TTT
1 AAAACACACTTT
88084054 A
1 A
88084055 CATTTTTGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 4 0.17
12 20 0.83
ACGTcount: A:0.53, C:0.22, G:0.00, T:0.25
Consensus pattern (12 bp):
AAAACACACTTT
Found at i:88088131 original size:27 final size:27
Alignment explanation
Indices: 88088092--88088174 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 27
88088082 AGGCAGCCAA
* ***
88088092 TTTACCATGTAAGGACATTTCAGTCAT
1 TTTACCATATAAGGACAAAACAGTCAT
88088119 TTTACCATATAAGGACAAAACAGTCAT
1 TTTACCATATAAGGACAAAACAGTCAT
* *
88088146 TTTACCACATAAGGGCAAAACAGTCAT
1 TTTACCATATAAGGACAAAACAGTCAT
88088173 TT
1 TT
88088175 CATCAAATTA
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.30
Consensus pattern (27 bp):
TTTACCATATAAGGACAAAACAGTCAT
Found at i:88088187 original size:27 final size:27
Alignment explanation
Indices: 88088112--88088187 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
88088102 AAGGACATTT
* * *
88088112 CAGTCATTTTACCATATAAGGACAAAA
1 CAGTCATTTCACCAAATAAGGGCAAAA
* *
88088139 CAGTCATTTTACCACATAAGGGCAAAA
1 CAGTCATTTCACCAAATAAGGGCAAAA
* *
88088166 CAGTCATTTCATCAAATTAGGG
1 CAGTCATTTCACCAAATAAGGG
88088188 TCTAGGTATA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.26
Consensus pattern (27 bp):
CAGTCATTTCACCAAATAAGGGCAAAA
Found at i:88088754 original size:17 final size:18
Alignment explanation
Indices: 88088732--88088765 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
88088722 CACATTGAAG
88088732 TGTTTT-ATCGAAAACCT
1 TGTTTTCATCGAAAACCT
*
88088749 TGTTTTCATTGAAAACC
1 TGTTTTCATCGAAAACC
88088766 CTTCCTTAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCT
Found at i:88089958 original size:29 final size:29
Alignment explanation
Indices: 88089890--88090012 Score: 144
Period size: 29 Copynumber: 4.3 Consensus size: 29
88089880 AAGTCTACAT
* *
88089890 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
** *
88089918 -CTATTTGTATGGCCCATTAGGCCTAAATC
1 AC-ATTCATATGGCCCATTAGGCCCAAATC
88089947 ACATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* * *
88089976 ACATTCATATGGCCTA-TCGGCCCCAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
88090004 ACATTCATA
1 ACATTCATA
88090013 GTCATGCTTT
Statistics
Matches: 81, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
27 1 0.01
28 36 0.44
29 43 0.53
30 1 0.01
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:88090004 original size:57 final size:57
Alignment explanation
Indices: 88089890--88090012 Score: 142
Period size: 57 Copynumber: 2.2 Consensus size: 57
88089880 AAGTCTACAT
* ** *
88089890 ACATGCATATGGCCCACTAGGCCCAATCCTATTTGTATGGCCCATTAGGCCTAAATC
1 ACATTCATATGGCCCACTAGGCCCAATCCTATTCATATGGCCCATTAGGCCCAAATC
* * * *
88089947 ACATTCATATGGCCCATTAGGCCCAAATCAC-ATTCATATGGCCTA-TCGGCCCCAATC
1 ACATTCATATGGCCCACTAGGCCC-AATC-CTATTCATATGGCCCATTAGGCCCAAATC
88090004 ACATTCATA
1 ACATTCATA
88090013 GTCATGCTTT
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
57 40 0.71
58 15 0.27
59 1 0.02
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.26
Consensus pattern (57 bp):
ACATTCATATGGCCCACTAGGCCCAATCCTATTCATATGGCCCATTAGGCCCAAATC
Found at i:88096526 original size:17 final size:18
Alignment explanation
Indices: 88096504--88096539 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
88096494 CACATTGAAG
88096504 TGTTTT-ATTAAAAACCT
1 TGTTTTCATTAAAAACCT
*
88096521 TGTTTTCATTGAAAACCT
1 TGTTTTCATTAAAAACCT
88096539 T
1 T
88096540 TCCTTAGAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.31, C:0.14, G:0.08, T:0.47
Consensus pattern (18 bp):
TGTTTTCATTAAAAACCT
Found at i:88103834 original size:28 final size:30
Alignment explanation
Indices: 88103797--88103890 Score: 108
Period size: 28 Copynumber: 3.3 Consensus size: 30
88103787 AAGTCTACAT
* *
88103797 ACATGCATATGGCCCAC-TAGGTCC-AATC
1 ACATTCATATGGCCCACTTAGGCCCAAATC
*
88103825 TCATTCATATGGCCC-CTTAGGCCCAAATC
1 ACATTCATATGGCCCACTTAGGCCCAAATC
* *
88103854 ACATTCATATGGCCCA--TCGGCCCCAATC
1 ACATTCATATGGCCCACTTAGGCCCAAATC
88103882 ACATTCATA
1 ACATTCATA
88103891 ATCATGCTTT
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
27 1 0.02
28 38 0.67
29 18 0.32
ACGTcount: A:0.28, C:0.34, G:0.14, T:0.24
Consensus pattern (30 bp):
ACATTCATATGGCCCACTTAGGCCCAAATC
Found at i:88106584 original size:16 final size:16
Alignment explanation
Indices: 88106565--88106596 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
88106555 AATTGTTTTG
88106565 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
88106581 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
88106597 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:88117146 original size:50 final size:50
Alignment explanation
Indices: 88117066--88117555 Score: 507
Period size: 50 Copynumber: 9.7 Consensus size: 50
88117056 AAGCTCTCGT
*
88117066 GTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTG
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTG
* * * * *
88117116 GTACACATAGTAACCTGCACTTAGTACTACATACGTGACTTATCCATCTG
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTG
* **
88117166 ATACATGTAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTG
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTG
* * * * *
88117216 GTACACATAGTAACCTGCACTTAGTACTACATACGTGACTTATCCATCTG
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTG
* ** * *
88117266 ATACATGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCG
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTG
* * * * * *
88117316 GTACACGTAGTAGCCTGCATTTAGTACTAAACACGTGACCTAACCATCTG
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTG
* * * * ** ** * * *
88117366 ATACACGTAGTAGGCTGCACTTAGTACTATACACATGATCGAAACTATCAG
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CCTATCAATCTG
* * * *
88117417 GTACGCATAGTAGCTTGCACTTAGTACTACACATGTGGCCTAACAATCTG
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTG
* * * *
88117467 GTACACGTAGTAGCTTGCACTTAGTACTACACATGTAACCTA--AAACTG
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTG
* *
88117515 TCTTAAACACATAGTAGCCTGCACATAGTACTACACATGTG
1 --GT--ACACATAGTAGCCTGCACTTAGTACTACACATGTG
88117556 TTCTCACAAT
Statistics
Matches: 362, Mismatches: 73, Indels: 8
0.82 0.16 0.02
Matches are distributed among these distances:
48 5 0.01
50 289 0.80
51 37 0.10
52 31 0.09
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.28
Consensus pattern (50 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTG
Found at i:88117246 original size:100 final size:100
Alignment explanation
Indices: 88117073--88117551 Score: 575
Period size: 100 Copynumber: 4.8 Consensus size: 100
88117063 CGTGTACGCA
88117073 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACATAGTAACCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACATAGTAACCTGCACTT
* * * *
88117138 AGTACTACATACGTGACTTATCCATCTGATACATG
66 AGTACTACACACGTGACCTAACCATCTGATACACG
88117173 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACATAGTAACCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACATAGTAACCTGCACTT
* * * *
88117238 AGTACTACATACGTGACTTATCCATCTGATACATG
66 AGTACTACACACGTGACCTAACCATCTGATACACG
* * * * *
88117273 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGGTACACGTAGTAGCCTGCATTT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACATAGTAACCTGCACTT
*
88117338 AGTACTAAACACGTGACCTAACCATCTGATACACG
66 AGTACTACACACGTGACCTAACCATCTGATACACG
* * ** ** * * * * * *
88117373 TAGTAGGCTGCACTTAGTACTATACACATGATCGAAACTATCAGGTACGCATAGTAGCTTGCACT
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCTATCAATCTGGTACACATAGTAACCTGCACT
* * * *
88117438 TAGTACTACACATGTGGCCTAACAATCTGGTACACG
65 TAGTACTACACACGTGACCTAACCATCTGATACACG
* * * * *
88117474 TAGTAGCTTGCACTTAGTACTACACATGTAACCTA--AAACTGTCTTAAACACATAGTAGCCTGC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTG--GT--ACACATAGTAACCTGC
*
88117537 ACATAGTACTACACA
62 ACTTAGTACTACACA
88117552 TGTGTTCTCA
Statistics
Matches: 330, Mismatches: 44, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
98 3 0.01
100 219 0.66
101 80 0.24
102 28 0.08
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (100 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACATAGTAACCTGCACTT
AGTACTACACACGTGACCTAACCATCTGATACACG
Found at i:88119946 original size:23 final size:24
Alignment explanation
Indices: 88119896--88119949 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 24
88119886 GAAAGAGTAT
*
88119896 AGGGAGTCCAAGAATTCAACATAT
1 AGGGAGTCCAAGAATTCAACATAA
*
88119920 AGGGAGTCC-AGAATTCAGC-TAAA
1 AGGGAGTCCAAGAATTCAACAT-AA
88119943 AGGGAGT
1 AGGGAGT
88119950 GAAAATAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 1 0.04
23 17 0.63
24 9 0.33
ACGTcount: A:0.39, C:0.15, G:0.28, T:0.19
Consensus pattern (24 bp):
AGGGAGTCCAAGAATTCAACATAA
Found at i:88122178 original size:21 final size:22
Alignment explanation
Indices: 88122130--88122182 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
88122120 ATGAAGTAGC
* *
88122130 AAATCAATTGATTGGAATAAAG
1 AAATAAATTGAATGGAATAAAG
88122152 AAATAAATTGAAT-GAA-AAAG
1 AAATAAATTGAATGGAATAAAG
88122172 AAAATAAATTG
1 -AAATAAATTG
88122183 GATACTTGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 4 0.14
21 13 0.46
22 11 0.39
ACGTcount: A:0.58, C:0.02, G:0.15, T:0.25
Consensus pattern (22 bp):
AAATAAATTGAATGGAATAAAG
Found at i:88126009 original size:27 final size:26
Alignment explanation
Indices: 88125969--88126073 Score: 93
Period size: 27 Copynumber: 3.9 Consensus size: 26
88125959 AGGAAGCGTC
*
88125969 CTGGTGGCTATGCCACAATTATCTAAT
1 CTGGTGGCTCTGCCAC-ATTATCTAAT
**
88125996 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTAAT
* * *
88126023 TTGGTGGCTCTGCTACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCT-AAT
* * *
88126051 CTAGTGACTCTGTCACATTATCT
1 CTGGTGGCTCTGCCACATTATCT
88126074 GTTCTGGCAG
Statistics
Matches: 63, Mismatches: 12, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
26 2 0.03
27 47 0.75
28 14 0.22
ACGTcount: A:0.19, C:0.23, G:0.20, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTAAT
Found at i:88126073 original size:54 final size:54
Alignment explanation
Indices: 88125970--88126076 Score: 135
Period size: 54 Copynumber: 2.0 Consensus size: 54
88125960 GGAAGCGTCC
* *
88125970 TGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTGTTT
1 TGGTGGCTATGCCACAATTATCTAATCTAGTGACTCTGCCACATATATCTGTTT
* * * * *
88126024 TGGTGGCTCTGCTACGATTATCTGTATCTAGTGACTCTGTCACAT-TATCTGTT
1 TGGTGGCTATGCCACAATTATCT-AATCTAGTGACTCTGCCACATATATCTGTT
88126077 CTGGCAGCCA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
54 28 0.62
55 17 0.38
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.39
Consensus pattern (54 bp):
TGGTGGCTATGCCACAATTATCTAATCTAGTGACTCTGCCACATATATCTGTTT
Found at i:88131987 original size:812 final size:811
Alignment explanation
Indices: 88129585--88132018 Score: 4007
Period size: 810 Copynumber: 3.0 Consensus size: 811
88129575 GGCGAATGAT
* * * *
88129585 GTTGAAAGTAATGTGCCTGCTCCCGTTGAAGGAGCAGTGCCGTCTGATAGTAGAACCACGACTGT
1 GTTGAAGGTAATGCGCCTGCTCCCGTTGAAGGAGCAGTGCCGTCTGATAGTAGACCCACGACTAT
* *
88129650 TAGTAGAAGAGAATGAGGTAGAGAAACCTTTCTTCACATAATGGATGCCTAGTACACGAAGTTCG
66 TAGTAGAGGAGAATGAGGTAGAGAAACCTTTCTTCACATAATGGATGCCTAGTACACGGAGTTCG
*
88129715 TTCGAACGAATCCGAACGCTCAACCTTGTCCACCCCCACCAAATCCCTAACCCGTACCTCAAGTG
131 TTCGAACGAATCCGAACGCTCAACCTCGTCCACCCCCACCAAATCCCTAACCC-TACCTCAAGTG
* * * * *
88129780 CCTCTAGGCATAGATTTTATAAGATTTCATAAAACCTTAGCTGATGGAATTCAAAAGCAAGGAGC
195 CCTCAAGGCATAGATTTTATGAGATTTCATAAAACCCTAGTTGATAGAATTCAAAAGCAAGGAGC
* *
88129845 TGAGGAATTTAGGGCCAATGCCGATGATGATCCCGAAAGGGTAAAAATTTGGCTAGAGAATTCCA
260 TGAGGAATTTAGGGCCAATGCCGATGATGATCCCGAAAGGGCAAAATTTTGGCTAGAGAATTCCA
* * *
88129910 TTTGGGTATTCAATGAGCTGTCCTGCACACTTGATGATTGTCTGAAGTGTGCTATTTCATTGTTG
325 TTTGGGTATTCGATGAGCTGTCCTACACACTTGATGAATGTCTGAAGTGTGCTATTTCATTGTTG
* *
88129975 AGGGATATGGCGTATCATTGGTGGAAGACGCTGATTTCGTTGGTTCCGAGAGAAAATGTCACATG
390 AGGGATGTGGCGTATCATTGGTGGAAGACGCTGATTTCGTTGGTTCCGAGAGAAAAGGTCACATG
88130040 GGAATTCTTTCAAGAGGAGTTCCGAAAGAAATACATCAGTGAGCGATTTATCGATCAAAAGC-CT
455 GGAATTCTTTCAAGAGGAGTTCCGAAAGAAATACATCAGTGAGCGATTTATCGATCAAAAGCGC-
* * *
88130104 AA-AGAATTTCTTGATTTGAAGCAAGGCTGCATGTCCGTCATTGAGTATGAAAGAGAGTTTGTCA
519 AAGA-AATTTCTTGATTTGAAACAAGGCCGCATGTCCGTCACTGAGTATGAAAGAGAGTTTGTCA
* *
88130168 GACTCAAAAAATTTGCTCAAAAATGTGTATCCTCCGAGGCTAAAATGTGTAGAAGGTTTGAAGAC
583 GACTCAAAAAATATGCTCAAAAATGTGTATCCTCCGAGGCTAAAATGTGTAGAAGGTTTGAAGAA
*
88130233 GGGCTTAATGAAGACATAAGAGTGTTAGTAGGTATTCTTAAGCTGAAGGAATTTGTTGTGCTCAT
648 GGGCTTAATGAAGACATAAGAGTGTTAGTAGGTATTCTTAAGCTGAAGGAATTTGTTGTGCTCGT
*
88130298 TGGTCGGGCTTGTAAAGCTGAGGAAGTAACCAAGGAAAGGATAAGAGTCGAAGCTGAGGCTAGAG
713 TGGTCGGGCTTGTAAAGCTGACGAAGTAACCAAGGAAAGGATAAGAGTCGAAGCTGAGGCTAGAG
88130363 ATATAAGGAAGAGACCGATGAGCAAGTCACTTCC
778 ATATAAGGAAGAGACCGATGAGCAAGTCACTTCC
* * *
88130397 GTTTAAGGTAATGCGCCTGTTCCCGTTGAAGGAGCAGTGCCGTCTGATAGTAGACCCATGACTAT
1 GTTGAAGGTAATGCGCCTGCTCCCGTTGAAGGAGCAGTGCCGTCTGATAGTAGACCCACGACTAT
*
88130462 TAGTAGAGGAGAATGAGGTAGAGAAACCATTCTTCACATAATGGATGCCTAGTACACGGAGTTCG
66 TAGTAGAGGAGAATGAGGTAGAGAAACCTTTCTTCACATAATGGATGCCTAGTACACGGAGTTCG
* *
88130527 TTCGAACGAATCTGAACGCTCAACCTCGTCCACCCCCACCAAATCCCTAACTCGTACCTCAAGTG
131 TTCGAACGAATCCGAACGCTCAACCTCGTCCACCCCCACCAAATCCCTAAC-CCTACCTCAAGTG
88130592 CCTCAAGGCATAGATTTTATGAGATTTCATAAAACCCT--TTGATAGAATTCAAAAGCAAGGAGC
195 CCTCAAGGCATAGATTTTATGAGATTTCATAAAACCCTAGTTGATAGAATTCAAAAGCAAGGAGC
* * * * *
88130655 CGAGTAATTTAGGGCCAATGCTGATGATGATCTCGAAAGGGCAAAATTTTGACTAGAGAATTCCA
260 TGAGGAATTTAGGGCCAATGCCGATGATGATCCCGAAAGGGCAAAATTTTGGCTAGAGAATTCCA
* * * * *
88130720 TTCGGGTATTCGATGAGCTATCCTACATACCTGATGAATGTCTGAAATGTGCTATTTCATTGTTG
325 TTTGGGTATTCGATGAGCTGTCCTACACACTTGATGAATGTCTGAAGTGTGCTATTTCATTGTTG
* *
88130785 AGGGATGCGGCGTATCATTGGTGGAAGACGTTGATTTCGTTGGTTCCGAGAGAAAAGGTCACATG
390 AGGGATGTGGCGTATCATTGGTGGAAGACGCTGATTTCGTTGGTTCCGAGAGAAAAGGTCACATG
* * *
88130850 GGAACTCTTTCAAGAGGAGTTCCGAAAGAAATACATCAGCGAGCGATTTATCGATCAAAAGCGTA
455 GGAATTCTTTCAAGAGGAGTTCCGAAAGAAATACATCAGTGAGCGATTTATCGATCAAAAGCGCA
*
88130915 AGAAATTTCTTGATTTGAAACAAGGCCGCATGTCCGTCACTAAGTATGAAAGAGAGTTTGTCAGA
520 AGAAATTTCTTGATTTGAAACAAGGCCGCATGTCCGTCACTGAGTATGAAAGAGAGTTTGTCAGA
* *
88130980 CTCAAAAAATATGCTTAAAAATGTGTATCCTCCAAGGCTAAAATGTGTAGAAGGTTTGAAGAAGG
585 CTCAAAAAATATGCTCAAAAATGTGTATCCTCCGAGGCTAAAATGTGTAGAAGGTTTGAAGAAGG
*
88131045 GCTTAATGAAGACATAAGAGTGTTAGTAGGTATTCTTAAGCAGAAGGAATTTGTTGTGCTCGTTG
650 GCTTAATGAAGACATAAGAGTGTTAGTAGGTATTCTTAAGCTGAAGGAATTTGTTGTGCTCGTTG
* * *
88131110 GTCGGGCTTGTAAAGCTGACGAAGTAACCAAGGAAAGGATAAGAGTTGAAGCTAAGGCGAGAGAT
715 GTCGGGCTTGTAAAGCTGACGAAGTAACCAAGGAAAGGATAAGAGTCGAAGCTGAGGCTAGAGAT
* *
88131175 ATAAGGAAGAGACGGATGAGCAATTCACTTCC
780 ATAAGGAAGAGACCGATGAGCAAGTCACTTCC
88131207 GTTGAAGGTAATGCGCCTGCTCCCGTTGAAGGAGCAGTGCCGTCTGATAGTAGACCCACGACTAT
1 GTTGAAGGTAATGCGCCTGCTCCCGTTGAAGGAGCAGTGCCGTCTGATAGTAGACCCACGACTAT
*
88131272 TAGTAGAGGAGAATGAGGTAGAGAAACCTTTCTTCAAATAATGGATGCCTAGTACACGGAGTTCG
66 TAGTAGAGGAGAATGAGGTAGAGAAACCTTTCTTCACATAATGGATGCCTAGTACACGGAGTTCG
* * *
88131337 TTCGAACGAATCCGAATGCTCAACCTCCTCCACCCCTACCAAATCCCTAACGCCTACCTCAAGTG
131 TTCGAACGAATCCGAACGCTCAACCTCGTCCACCCCCACCAAATCCCTAAC-CCTACCTCAAGTG
88131402 CCTCAAGGCATAGATTTTATGAGATTTCATAAAACCCTAGTTGATAGAATTCAAAAGCAAGGAGC
195 CCTCAAGGCATAGATTTTATGAGATTTCATAAAACCCTAGTTGATAGAATTCAAAAGCAAGGAGC
* * * *
88131467 TGAGGAATTTAGGGCCAATACCGATAATGATCCCGAAAGGGCAAAATTTTGGTTAGAGAATTGCA
260 TGAGGAATTTAGGGCCAATGCCGATGATGATCCCGAAAGGGCAAAATTTTGGCTAGAGAATTCCA
*
88131532 TTTGGGTATTCGATGAGCTGTCCTACACACTTGATGAATGTATGAAGTGTGCTATTTCATTGTTG
325 TTTGGGTATTCGATGAGCTGTCCTACACACTTGATGAATGTCTGAAGTGTGCTATTTCATTGTTG
* * *
88131597 AGGGATGTGGCGTATCATTGGTGGAAGACACTGATTTTGTTGGTTTCGAGAGAAAAGGTCACATG
390 AGGGATGTGGCGTATCATTGGTGGAAGACGCTGATTTCGTTGGTTCCGAGAGAAAAGGTCACATG
* *
88131662 GGAATTCTTTCAAGAGGAGTTTCGAAAGAAATACATCAGTGAGCAATTTATCGATCAAAAGCGCA
455 GGAATTCTTTCAAGAGGAGTTCCGAAAGAAATACATCAGTGAGCGATTTATCGATCAAAAGCGCA
* * *
88131727 AGAAATTTTTTG-TTTGAAACAAGGCCGCATGCCCGTCACTGAGTATGAAAGAGAGTATGTCAGA
520 AGAAATTTCTTGATTTGAAACAAGGCCGCATGTCCGTCACTGAGTATGAAAGAGAGTTTGTCAGA
* * * *
88131791 CTCAGAAAATATGCTCGAAAATGTGTATCCTCTGAGGCTAAAATGTGTAGAAGGTTTGAAGATGG
585 CTCAAAAAATATGCTCAAAAATGTGTATCCTCCGAGGCTAAAATGTGTAGAAGGTTTGAAGAAGG
*
88131856 GCTTAATGAAGACATAAGAGTGTTAGTAGGTATTCTTAAGCTGAAGCAATTTGTTGTGCTCGTTG
650 GCTTAATGAAGACATAAGAGTGTTAGTAGGTATTCTTAAGCTGAAGGAATTTGTTGTGCTCGTTG
* * * * *
88131921 GTTCGGGCTTGTAAAGCTAACGAACTAACCAAGGAAA-GAAAAGGAGCCAAAGCTGAGGCTAGAG
715 G-TCGGGCTTGTAAAGCTGACGAAGTAACCAAGGAAAGGATAA-GAGTCGAAGCTGAGGCTAGAG
*
88131985 ATATAAGGAAGAGACTGATGAGCAAGTCACTTCC
778 ATATAAGGAAGAGACCGATGAGCAAGTCACTTCC
88132019 ATATCAGTCT
Statistics
Matches: 1501, Mismatches: 114, Indels: 14
0.92 0.07 0.01
Matches are distributed among these distances:
810 756 0.50
811 177 0.12
812 567 0.38
813 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (811 bp):
GTTGAAGGTAATGCGCCTGCTCCCGTTGAAGGAGCAGTGCCGTCTGATAGTAGACCCACGACTAT
TAGTAGAGGAGAATGAGGTAGAGAAACCTTTCTTCACATAATGGATGCCTAGTACACGGAGTTCG
TTCGAACGAATCCGAACGCTCAACCTCGTCCACCCCCACCAAATCCCTAACCCTACCTCAAGTGC
CTCAAGGCATAGATTTTATGAGATTTCATAAAACCCTAGTTGATAGAATTCAAAAGCAAGGAGCT
GAGGAATTTAGGGCCAATGCCGATGATGATCCCGAAAGGGCAAAATTTTGGCTAGAGAATTCCAT
TTGGGTATTCGATGAGCTGTCCTACACACTTGATGAATGTCTGAAGTGTGCTATTTCATTGTTGA
GGGATGTGGCGTATCATTGGTGGAAGACGCTGATTTCGTTGGTTCCGAGAGAAAAGGTCACATGG
GAATTCTTTCAAGAGGAGTTCCGAAAGAAATACATCAGTGAGCGATTTATCGATCAAAAGCGCAA
GAAATTTCTTGATTTGAAACAAGGCCGCATGTCCGTCACTGAGTATGAAAGAGAGTTTGTCAGAC
TCAAAAAATATGCTCAAAAATGTGTATCCTCCGAGGCTAAAATGTGTAGAAGGTTTGAAGAAGGG
CTTAATGAAGACATAAGAGTGTTAGTAGGTATTCTTAAGCTGAAGGAATTTGTTGTGCTCGTTGG
TCGGGCTTGTAAAGCTGACGAAGTAACCAAGGAAAGGATAAGAGTCGAAGCTGAGGCTAGAGATA
TAAGGAAGAGACCGATGAGCAAGTCACTTCC
Found at i:88137189 original size:21 final size:21
Alignment explanation
Indices: 88137144--88137221 Score: 70
Period size: 21 Copynumber: 3.6 Consensus size: 21
88137134 CTAGGAATTA
* * *
88137144 TGTGATCTGAATTGATTGAGT
1 TGTGGTCTGAGTTCATTGAGT
88137165 TGTGGTCTGAGTTCA-TGTA-T
1 TGTGGTCTGAGTTCATTG-AGT
*
88137185 ATGTGGCATCTGAGCTCATTGAGT
1 -TGTGG--TCTGAGTTCATTGAGT
88137209 TGTGGTCTGAGTT
1 TGTGGTCTGAGTT
88137222 TTTGATATAT
Statistics
Matches: 46, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
20 3 0.07
21 25 0.54
23 15 0.33
24 3 0.07
ACGTcount: A:0.18, C:0.10, G:0.31, T:0.41
Consensus pattern (21 bp):
TGTGGTCTGAGTTCATTGAGT
Found at i:88137212 original size:23 final size:21
Alignment explanation
Indices: 88137158--88137219 Score: 65
Period size: 23 Copynumber: 2.9 Consensus size: 21
88137148 ATCTGAATTG
*
88137158 ATTGAGTTGTGGTCTGAGTTC
1 ATTGAGTTGTGGTCTGAGCTC
88137179 A-TGTA-TATGTGGCATCTGAGCTC
1 ATTG-AGT-TGTGG--TCTGAGCTC
88137202 ATTGAGTTGTGGTCTGAG
1 ATTGAGTTGTGGTCTGAG
88137220 TTTTTGATAT
Statistics
Matches: 34, Mismatches: 1, Indels: 12
0.72 0.02 0.26
Matches are distributed among these distances:
20 3 0.09
21 13 0.38
23 15 0.44
24 3 0.09
ACGTcount: A:0.18, C:0.11, G:0.32, T:0.39
Consensus pattern (21 bp):
ATTGAGTTGTGGTCTGAGCTC
Found at i:88148419 original size:43 final size:43
Alignment explanation
Indices: 88148366--88148521 Score: 145
Period size: 43 Copynumber: 3.6 Consensus size: 43
88148356 TGCTATATCT
* ** *
88148366 CAGATATAGTCTTACATGTTATCTCATATCGATGCCAATGTCC
1 CAGACATAGTCTTACACATAATCTCATATCGATGCCAATGTCC
* * * **
88148409 CAGACATAGTCTTACACAAAATCAT-ATAACGATGCCAATATTA
1 CAGACATAGTCTTACACATAATC-TCATATCGATGCCAATGTCC
* * *
88148452 CAGACATGGTCTTACACATAATCACA-ATACAATGCCAATGTCC
1 CAGACATAGTCTTACACATAATCTCATAT-CGATGCCAATGTCC
* **
88148495 CAGACATGGTCTTACATGTAATCTCAT
1 CAGACATAGTCTTACACATAATCTCAT
88148522 CTTGGTAATC
Statistics
Matches: 89, Mismatches: 20, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
42 1 0.01
43 87 0.98
44 1 0.01
ACGTcount: A:0.35, C:0.24, G:0.12, T:0.29
Consensus pattern (43 bp):
CAGACATAGTCTTACACATAATCTCATATCGATGCCAATGTCC
Found at i:88150077 original size:13 final size:13
Alignment explanation
Indices: 88150059--88150088 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
88150049 CAGTCAAGAG
*
88150059 ATATATAATTTAT
1 ATATATAAGTTAT
88150072 ATATATAAGTTAT
1 ATATATAAGTTAT
88150085 ATAT
1 ATAT
88150089 GTTATATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (13 bp):
ATATATAAGTTAT
Found at i:88153312 original size:5 final size:5
Alignment explanation
Indices: 88153302--88153340 Score: 78
Period size: 5 Copynumber: 7.8 Consensus size: 5
88153292 GAATATGCAA
88153302 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
88153341 TCCCTTTGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTC
Found at i:88155079 original size:212 final size:211
Alignment explanation
Indices: 88154695--88155123 Score: 563
Period size: 212 Copynumber: 2.0 Consensus size: 211
88154685 AAATTTATGG
* * *
88154695 TGAATTTCCAAAGTCAGAATAGGAGATCCAGAAATCGCTCTGGCCCTGTTTCAAAAAAATTTAAA
1 TGAATTTCCAAAGTCAGAACAGGAGATCCAGAAATCGCTCTGGACCTGTTTCAAAAAAACTTAAA
* * * *
88154760 CATCTCATATAATATAGCTCATATACCTTTTTTTCTTCTTCCATATGAAAATAGAATCATCAGGC
66 CATCTCATAAAATATAACTCATATACCTTTTTTTC-TCATCCATATGAAAATAGAATCATAAGGC
* * * * * *
88154825 TTCGATTCCATAACTTATTCATTATTTAATTCCATTTCTACTATTTTTAGTGATTTTTAAAATTC
130 TTCAATTCCATAACTTATTCATCATCTAATTCCATCTCTACTATTTTTAATGATTTTTAAAACTC
**
88154890 ATGTCACTACTGCTGTC
195 ACATCACTACTGCTGTC
* *
88154907 TGAATTTCCAAAGTCAGAACAGGGGATCCAGAAATCGCTCTGGACCTGTTTCACAAAAACTTAAA
1 TGAATTTCCAAAGTCAGAACAGGAGATCCAGAAATCGCTCTGGACCTGTTTCAAAAAAACTTAAA
* * * **
88154972 CATCTCATAAAATATAACTTATATACCTGTTTTGTTC-CATCCTTATGAAAATAGACTCATAATT
66 CATCTCATAAAATATAACTCATATACCT-TTTT-TTCTCATCCATATGAAAATAGAATCATAAGG
** ** *
88155036 CTTCAATTCCATATTTTATTCATCATCTAATTGTATCTCTACTATTTTTAATGATTTTTCAAACT
129 CTTCAATTCCATAACTTATTCATCATCTAATTCCATCTCTACTATTTTTAATGATTTTTAAAACT
**
88155101 CACATCACTGTTGCTGTC
194 CACATCACTACTGCTGTC
88155119 TGAAT
1 TGAAT
88155124 CTATTTTATG
Statistics
Matches: 186, Mismatches: 29, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
212 179 0.96
213 4 0.02
214 3 0.02
ACGTcount: A:0.32, C:0.20, G:0.10, T:0.38
Consensus pattern (211 bp):
TGAATTTCCAAAGTCAGAACAGGAGATCCAGAAATCGCTCTGGACCTGTTTCAAAAAAACTTAAA
CATCTCATAAAATATAACTCATATACCTTTTTTTCTCATCCATATGAAAATAGAATCATAAGGCT
TCAATTCCATAACTTATTCATCATCTAATTCCATCTCTACTATTTTTAATGATTTTTAAAACTCA
CATCACTACTGCTGTC
Found at i:88155890 original size:93 final size:93
Alignment explanation
Indices: 88155778--88155948 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
88155768 GCCCATAAGT
* *
88155778 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
88155843 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
88155871 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
88155936 CGAGTTCGGATGC
66 CGAGTTCGGATGC
88155949 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:88155945 original size:46 final size:46
Alignment explanation
Indices: 88155770--88155945 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
88155760 TGTAACCCGC
* * *
88155770 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
88155816 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
88155866 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
88155909 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
88155946 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Done.