Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 289 of 313
Found at i:88588648 original size:143 final size:141
Alignment explanation
Indices: 88588386--88588735 Score: 574
Period size: 143 Copynumber: 2.5 Consensus size: 141
88588376 CAGCCAAGAC
*
88588386 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
88588451 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
66 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
88588516 ATGAATGTGAA
131 ATGAATGTGAA
88588527 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGAT
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGAT
88588592 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
64 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
*
88588657 TGATGTATGTGAA
129 TGATGAATGTGAA
* * * * * * * * **
88588670 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
88588735 G
66 G
88588736 TCCCGAAGGG
Statistics
Matches: 195, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
141 56 0.29
143 139 0.71
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (141 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
ATGAATGTGAA
Found at i:88588909 original size:37 final size:37
Alignment explanation
Indices: 88588853--88588931 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
88588843 CCGAGCTCTA
* *
88588853 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
88588890 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
88588927 AAGAC
1 AAGAC
88588932 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:88597088 original size:45 final size:41
Alignment explanation
Indices: 88597013--88597120 Score: 117
Period size: 45 Copynumber: 2.5 Consensus size: 41
88597003 ATATGTGTTC
* ** * *
88597013 TCGTGTAAGACCACGTCTGGGATGTTGGCATCGATATATGTGGT
1 TCGTGTAAGACCATGTCTGGGACATCGGCATCG-TAT-T-TGAT
*
88597057 TATGTGTAAGACCATGTCTGGGACATCGGCATCGTATTTGAT
1 T-CGTGTAAGACCATGTCTGGGACATCGGCATCGTATTTGAT
*
88597099 TCGTGTAAGACCCTGTCTGGGA
1 TCGTGTAAGACCATGTCTGGGA
88597121 TAGTGGCACC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
41 19 0.35
42 4 0.07
43 1 0.02
44 4 0.07
45 27 0.49
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.31
Consensus pattern (41 bp):
TCGTGTAAGACCATGTCTGGGACATCGGCATCGTATTTGAT
Found at i:88604100 original size:40 final size:41
Alignment explanation
Indices: 88604015--88604108 Score: 113
Period size: 40 Copynumber: 2.3 Consensus size: 41
88604005 CTAAGTTCGA
88604015 CACTAAGTGTGCG-GTTCAAAATAGCTTCGGCTACAAATGG
1 CACTAAGTGTGCGAGTTCAAAATAGCTTCGGCTACAAATGG
* ** * *
88604055 TACTAAGTGTGCGAGTT-GGAATAGCTTCGGCTATATGA-GG
1 CACTAAGTGTGCGAGTTCAAAATAGCTTCGGCTACA-AATGG
88604095 CACTAAGTGTGCGA
1 CACTAAGTGTGCGA
88604109 TACCAAGATA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
40 42 0.91
41 4 0.09
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.27
Consensus pattern (41 bp):
CACTAAGTGTGCGAGTTCAAAATAGCTTCGGCTACAAATGG
Found at i:88608713 original size:20 final size:20
Alignment explanation
Indices: 88608679--88608727 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
88608669 ATCTCGTTTT
*
88608679 CAAATCATATAATCAACATCA
1 CAAATCATATAATCAA-AACA
*
88608700 CAAA-CATATCATCAAAACA
1 CAAATCATATAATCAAAACA
88608719 CAAATCATA
1 CAAATCATA
88608728 CCTATCATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 7 0.28
20 14 0.56
21 4 0.16
ACGTcount: A:0.55, C:0.24, G:0.00, T:0.20
Consensus pattern (20 bp):
CAAATCATATAATCAAAACA
Found at i:88612247 original size:43 final size:43
Alignment explanation
Indices: 88612186--88612281 Score: 149
Period size: 43 Copynumber: 2.2 Consensus size: 43
88612176 ACTTAGTTCT
88612186 AATTAATTAACCGAAGCTATAATTGTATTGCACACCTAGTGCC
1 AATTAATTAACCGAAGCTATAATTGTATTGCACACCTAGTGCC
* * *
88612229 AATTAATTAGCTGAAGCTATAATTGTATTGCACACTTAGTGCC
1 AATTAATTAACCGAAGCTATAATTGTATTGCACACCTAGTGCC
88612272 -ATTATATTAA
1 AATTA-ATTAA
88612282 ATCGAACTTA
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
42 4 0.08
43 44 0.92
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34
Consensus pattern (43 bp):
AATTAATTAACCGAAGCTATAATTGTATTGCACACCTAGTGCC
Found at i:88616971 original size:39 final size:39
Alignment explanation
Indices: 88616927--88617123 Score: 290
Period size: 39 Copynumber: 5.1 Consensus size: 39
88616917 ATGCAAGACA
*
88616927 CTGGAAATGAATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
88616966 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGGTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
88617005 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
88617044 CTGGAAATGTATCCGGG-TCAAAGTCCCGCAGACTT-GTG
1 CTGGAAATGTATCCGGGCT-AAAGTCCCGCAGGCTTCGTG
* * * *
88617082 TTGGAAATGTATTCGGGTTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
88617121 CTG
1 CTG
88617124 ATAATATAAT
Statistics
Matches: 143, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
38 34 0.24
39 109 0.76
ACGTcount: A:0.21, C:0.23, G:0.31, T:0.25
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:88622605 original size:24 final size:23
Alignment explanation
Indices: 88622570--88622694 Score: 169
Period size: 24 Copynumber: 5.2 Consensus size: 23
88622560 GGCCTATCCT
* *
88622570 CTTTTAAAAACTGGGGCAAAAGC
1 CTTTTAATAACTGGGGCATAAGC
88622593 CTTTTTAATAACTGGGGCATAAGTC
1 C-TTTTAATAACTGGGGCATAAG-C
88622618 CTTTTAATAACTGGGGCATAAGTC
1 CTTTTAATAACTGGGGCATAAG-C
* *
88622642 CTTTTGATAACTGGGGCAGAAGCC
1 CTTTTAATAACTGGGGCATAAG-C
88622666 CTTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAG-C
88622690 CTTTT
1 CTTTT
88622695 GCACTTCCTC
Statistics
Matches: 93, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
23 1 0.01
24 90 0.97
25 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (23 bp):
CTTTTAATAACTGGGGCATAAGC
Found at i:88622770 original size:20 final size:20
Alignment explanation
Indices: 88622745--88622783 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
88622735 TATGAATACC
88622745 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATG
88622765 TCATGTGCATATCATACAT
1 TCATGTGCATATCATACAT
88622784 ACCATGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATG
Found at i:88622789 original size:20 final size:20
Alignment explanation
Indices: 88622746--88622790 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
88622736 ATGAATACCT
**
88622746 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAC
88622766 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAC
88622786 CATGT
1 CATGT
88622791 TTATCAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.33
Consensus pattern (20 bp):
CATGTGCATATCATACATAC
Found at i:88622859 original size:25 final size:25
Alignment explanation
Indices: 88622827--88622876 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
88622817 ATATATAAAC
* * *
88622827 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
88622852 CCTAGGGGCAAAACGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
88622877 TATTATAAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:88626838 original size:43 final size:43
Alignment explanation
Indices: 88626791--88626950 Score: 168
Period size: 43 Copynumber: 3.8 Consensus size: 43
88626781 AATGCCAACA
*
88626791 TCCCAGACGTGGTCTTACATGAAATCACATATCGATGCCACTG
1 TCCCAGACGTGGTCTTACACGAAATCACATATCGATGCCACTG
* *
88626834 TCCCAGACAG-GGTCTTACACG-AATCAAATA-CGATGCCAATG
1 TCCCAGAC-GTGGTCTTACACGAAATCACATATCGATGCCACTG
* * * * * *
88626875 TTCTAGACATGGTCTTACACGTAATCACATATCGATTCCAAC-A
1 TCCCAGACGTGGTCTTACACGAAATCACATATCGATGCC-ACTG
*
88626918 TCCCAGACGTGGTCTTACATGAGAA-CACATATC
1 TCCCAGACGTGGTCTTACACGA-AATCACATATC
88626951 AAAAATCCTA
Statistics
Matches: 96, Mismatches: 15, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
41 27 0.28
42 16 0.17
43 49 0.51
44 4 0.04
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (43 bp):
TCCCAGACGTGGTCTTACACGAAATCACATATCGATGCCACTG
Found at i:88628102 original size:14 final size:15
Alignment explanation
Indices: 88628085--88628113 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
88628075 ATACAAAAAT
88628085 TTCACACAT-ATAAA
1 TTCACACATAATAAA
88628099 TTCACACATAATAAA
1 TTCACACATAATAAA
88628114 CATAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:88638995 original size:42 final size:42
Alignment explanation
Indices: 88638948--88639031 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
88638938 GATTACCAAA
*
88638948 AGGATAGGGTCGGTAGCATATTGATTGGCTTTACCGTCTGAG
1 AGGATAGGGCCGGTAGCATATTGATTGGCTTTACCGTCTGAG
88638990 AGGATAGGGCCGGTAGCATATTGATTGGCTTTACCGTCTGAG
1 AGGATAGGGCCGGTAGCATATTGATTGGCTTTACCGTCTGAG
88639032 TTGGAAAGAA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.21, C:0.15, G:0.33, T:0.30
Consensus pattern (42 bp):
AGGATAGGGCCGGTAGCATATTGATTGGCTTTACCGTCTGAG
Found at i:88641656 original size:11 final size:11
Alignment explanation
Indices: 88641640--88641665 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
88641630 ACACGGGCGT
88641640 GTGTCTAGACC
1 GTGTCTAGACC
88641651 GTGTCTAGACC
1 GTGTCTAGACC
88641662 GTGT
1 GTGT
88641666 GTGACACACG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.23, G:0.31, T:0.31
Consensus pattern (11 bp):
GTGTCTAGACC
Found at i:88644400 original size:50 final size:50
Alignment explanation
Indices: 88644325--88644536 Score: 309
Period size: 50 Copynumber: 4.2 Consensus size: 50
88644315 CACTCATTTA
* *
88644325 GCCGAATACACAAGATCAAATATAACATCACATTTGTACATACATATATG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACATATATG
* * *
88644375 GCCGAATATACAAGATAAAATATAACATCACATATGTACATACCTATGTG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACATATATG
* * *
88644425 GCCGAATATACAACATCAAATATAACATCACATATCTACATACCA-ATAGG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATA-CATATATG
* * *
88644475 GTCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATCTG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACATATATG
88644525 GCCGAATATACA
1 GCCGAATATACA
88644537 TGGTCATTTA
Statistics
Matches: 142, Mismatches: 18, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
49 1 0.01
50 140 0.99
51 1 0.01
ACGTcount: A:0.44, C:0.21, G:0.10, T:0.25
Consensus pattern (50 bp):
GCCGAATATACAAGATCAAATATAACATCACATATGTACATACATATATG
Found at i:88644734 original size:41 final size:41
Alignment explanation
Indices: 88644611--88644766 Score: 108
Period size: 41 Copynumber: 3.9 Consensus size: 41
88644601 TTAAAATAAA
** * *
88644611 TCACCAGCATAAAACCTGCTAGGC-ATAAGCCTGAATCACA-
1 TCACCAGCATAAGGCCTGCTAGGCTAAAAGCCTG-ATCAAAT
* * * * * * ***
88644651 -CACCGGCACAAGGCCAGCTAGACTCAAAGTCTGATTTTAT
1 TCACCAGCATAAGGCCTGCTAGGCTAAAAGCCTGATCAAAT
88644691 TCACC-GACAATAA-GCCTGCTAGGC-ATAAAGCCTGATCAAAT
1 TCACCAG-C-ATAAGGCCTGCTAGGCTA-AAAGCCTGATCAAAT
*
88644732 TCACCAGCATAAGGCTTGCTAGGCTAAAAGCCTGA
1 TCACCAGCATAAGGCCTGCTAGGCTAAAAGCCTGA
88644767 ATATCACTAT
Statistics
Matches: 86, Mismatches: 21, Indels: 17
0.69 0.17 0.14
Matches are distributed among these distances:
39 20 0.23
40 11 0.13
41 50 0.58
42 5 0.06
ACGTcount: A:0.34, C:0.28, G:0.19, T:0.20
Consensus pattern (41 bp):
TCACCAGCATAAGGCCTGCTAGGCTAAAAGCCTGATCAAAT
Found at i:88646946 original size:36 final size:36
Alignment explanation
Indices: 88646892--88646963 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
88646882 ACCGCGATGT
* *
88646892 AAATCTCGGATCTGTATCTGACACAATAGAAATAGG
1 AAATCTCGAATCTCTATCTGACACAATAGAAATAGG
88646928 AAATCTCGAATCTCTATCTGACACAATAGAAATAGG
1 AAATCTCGAATCTCTATCTGACACAATAGAAATAGG
88646964 TACTCCGTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.40, C:0.18, G:0.17, T:0.25
Consensus pattern (36 bp):
AAATCTCGAATCTCTATCTGACACAATAGAAATAGG
Found at i:88652012 original size:50 final size:50
Alignment explanation
Indices: 88651953--88652210 Score: 408
Period size: 50 Copynumber: 5.2 Consensus size: 50
88651943 CATTTAGTCA
* * *
88651953 AATACACAAGATCCAATATAACATCACATATGTACATACCTATATGGCCG
1 AATATACAAGATCAAATATAACATCACATATGTACATACCTATGTGGCCG
88652003 AATATACAAGATCAAATATAACATCACATATGTACATACCTATGTGGCCG
1 AATATACAAGATCAAATATAACATCACATATGTACATACCTATGTGGCCG
* ***
88652053 AATATACACGATCAAATATAACATCACATATGTACATACCTATGTTATCG
1 AATATACAAGATCAAATATAACATCACATATGTACATACCTATGTGGCCG
* * * *
88652103 AATATACAAGTTCAAATATATCATCACATATCTACATACCTATCTGGCCG
1 AATATACAAGATCAAATATAACATCACATATGTACATACCTATGTGGCCG
*
88652153 AATATACAAGATCAAATATAACATCACATATGTACATGCCTATGTGGCCG
1 AATATACAAGATCAAATATAACATCACATATGTACATACCTATGTGGCCG
88652203 AATATACA
1 AATATACA
88652211 TGGTCATTTA
Statistics
Matches: 188, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 188 1.00
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.27
Consensus pattern (50 bp):
AATATACAAGATCAAATATAACATCACATATGTACATACCTATGTGGCCG
Found at i:88666951 original size:17 final size:17
Alignment explanation
Indices: 88666929--88666969 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
88666919 ATTAGCTTTT
88666929 CATTTCATATCATAAGC
1 CATTTCATATCATAAGC
88666946 CATTTCATATCATAAGC
1 CATTTCATATCATAAGC
88666963 CATTTCA
1 CATTTCA
88666970 AAAACTCGGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.34, C:0.24, G:0.05, T:0.37
Consensus pattern (17 bp):
CATTTCATATCATAAGC
Found at i:88670323 original size:93 final size:93
Alignment explanation
Indices: 88670213--88670383 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
88670203 GCCCCTAAGT
* * *
88670213 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTTGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
*
88670278 CGAGTTTGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
88670306 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
88670371 CGAGTTCGGATGC
66 CGAGTTCGGATGC
88670384 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:88670380 original size:46 final size:46
Alignment explanation
Indices: 88670208--88670380 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
88670198 AACCTGCCCC
* * * *
88670208 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * * *
88670254 TAAATGAACTTGGACTCAACTCAACGAGTTTGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
88670302 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
88670347 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
88670381 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 58 0.56
47 27 0.26
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:88677092 original size:19 final size:20
Alignment explanation
Indices: 88677068--88677105 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
88677058 GGTACCACCA
88677068 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
88677087 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
88677106 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:88678482 original size:27 final size:26
Alignment explanation
Indices: 88678452--88678661 Score: 190
Period size: 27 Copynumber: 7.8 Consensus size: 26
88678442 TTTAGTTTAC
*
88678452 TAAAATTACCGAAATACCCTTATTTTG
1 TAAAATTACCAAAATACCCTTA-TTTG
* ** *
88678479 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCAAAATACCCT-TATTTG
**
88678506 TAAAATTACTGAAATA-CCTTCGATTTG
1 TAAAATTACCAAAATACCCTT--ATTTG
*
88678533 TAAAATTACCAAAATACCCCTAATTTG
1 TAAAATTACCAAAATA-CCCTTATTTG
**
88678560 TAAAATTACCAAAATACCACTGGTTTG
1 TAAAATTACCAAAATACC-CTTATTTG
* *
88678587 TGAAATTACCAAAATACCCTCAATTTG
1 TAAAATTACCAAAATACCCT-TATTTG
* *
88678614 TAAAATTACCAAAATACCCCTGATTTA
1 TAAAATTACCAAAATA-CCCTTATTTG
*
88678641 TAAAGTTA-CAGAAATACCCTT
1 TAAAATTACCA-AAATACCCTT
88678662 GACTTTCTAA
Statistics
Matches: 156, Mismatches: 18, Indels: 19
0.81 0.09 0.10
Matches are distributed among these distances:
26 13 0.08
27 135 0.87
28 5 0.03
29 3 0.02
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (26 bp):
TAAAATTACCAAAATACCCTTATTTG
Found at i:88678520 original size:54 final size:53
Alignment explanation
Indices: 88678452--88678660 Score: 217
Period size: 54 Copynumber: 3.9 Consensus size: 53
88678442 TTTAGTTTAC
* * ** *
88678452 TAAAATTACCGAAATACCCTTATTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCAAAATACCCTTA-TTTGTAAAATTACCAAAATACCCTCAATTTG
**
88678506 TAAAATTACTGAAATA-CCTTCGATTTGTAAAATTACCAAAATACCC-CTAATTTG
1 TAAAATTACCAAAATACCCTT--ATTTGTAAAATTACCAAAATACCCTC-AATTTG
** *
88678560 TAAAATTACCAAAATACCACTGGTTTGTGAAATTACCAAAATACCCTCAATTTG
1 TAAAATTACCAAAATACC-CTTATTTGTAAAATTACCAAAATACCCTCAATTTG
* * *
88678614 TAAAATTACCAAAATACCCCTGATTTATAAAGTTA-CAGAAATACCCT
1 TAAAATTACCAAAATA-CCCTTATTTGTAAAATTACCA-AAATACCCT
88678661 TGACTTTCTA
Statistics
Matches: 133, Mismatches: 14, Indels: 16
0.82 0.09 0.10
Matches are distributed among these distances:
53 7 0.05
54 119 0.89
55 5 0.04
56 2 0.02
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (53 bp):
TAAAATTACCAAAATACCCTTATTTGTAAAATTACCAAAATACCCTCAATTTG
Found at i:88678575 original size:81 final size:80
Alignment explanation
Indices: 88678452--88678660 Score: 249
Period size: 81 Copynumber: 2.6 Consensus size: 80
88678442 TTTAGTTTAC
* * * * ** **
88678452 TAAAATTACCGAAATACCCTTATTTTGTAAAAATACTGAAATACCCTCGATTTGTAAAATTACTG
1 TAAAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCT-GATTTGTAAAATTACCA
* *
88678517 AAATACCTTCGATTTG
65 AAATACCCTCAATTTG
* *
88678533 TAAAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCA
1 TAAAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACC-CTGATTTGTAAAATTACCA
88678598 AAATACCCTCAATTTG
65 AAATACCCTCAATTTG
* * *
88678614 TAAAATTACCAAAATACCCCTGATTTATAAAGTTA-CAGAAATACCCT
1 TAAAATTACCAAAATACCCCTAATTTGTAAAATTACCA-AAATACCCT
88678661 TGACTTTCTA
Statistics
Matches: 111, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
80 4 0.04
81 105 0.95
82 2 0.02
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (80 bp):
TAAAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCTGATTTGTAAAATTACCAA
AATACCCTCAATTTG
Found at i:88678703 original size:27 final size:27
Alignment explanation
Indices: 88678671--88678722 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
88678661 TGACTTTCTA
*
88678671 AAAATTA-TAGAAATGCCATTGGTTTAC
1 AAAATTACT-GAAATACCATTGGTTTAC
*
88678698 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACTGAAATACCATTGGTTT
88678723 GTAGATTTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35
Consensus pattern (27 bp):
AAAATTACTGAAATACCATTGGTTTAC
Found at i:88678840 original size:27 final size:27
Alignment explanation
Indices: 88678777--88678840 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
88678767 CCCCTATTAA
*
88678777 GTAAAAAGACCGTAAAGCCCCTGTAGG
1 GTAAAATGACCGTAAAGCCCCTGTAGG
* *
88678804 GTAAAGTGACCGTAATA-CCCCTGTATG
1 GTAAAATGACCGTAA-AGCCCCTGTAGG
88678831 GTAAAATGAC
1 GTAAAATGAC
88678841 GAATATGCCC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (27 bp):
GTAAAATGACCGTAAAGCCCCTGTAGG
Found at i:88679721 original size:52 final size:51
Alignment explanation
Indices: 88679643--88679778 Score: 206
Period size: 52 Copynumber: 2.7 Consensus size: 51
88679633 GAGGAAGTGC
*
88679643 AAAAGGGCTTATGCCTCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
*
88679695 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGGTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
*
88679746 AAAAGGGCTT-TACCCCAG-TTATT-AAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG-GGCT
88679779 AGGCCTCCAG
Statistics
Matches: 79, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
48 5 0.06
49 8 0.10
50 7 0.09
51 25 0.32
52 34 0.43
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.27
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
Found at i:88679740 original size:25 final size:26
Alignment explanation
Indices: 88679643--88679778 Score: 172
Period size: 26 Copynumber: 5.3 Consensus size: 26
88679633 GAGGAAGTGC
*
88679643 AAAAGGGCTTATGCCTCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
88679669 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
88679695 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
88679721 AAAAGGGGTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
88679746 AAAAGGGCTT-TACCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
88679769 AAAAGAGGCT
1 AAAAG-GGCT
88679779 AGGCCTCCAG
Statistics
Matches: 97, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
23 5 0.05
24 7 0.07
25 29 0.30
26 56 0.58
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:88679970 original size:42 final size:42
Alignment explanation
Indices: 88679911--88680002 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
88679901 TAGTCTCCCC
* ** *
88679911 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
*
88679953 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
88679995 AAATGGGC
1 AAATGGGC
88680003 CTATGGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:88680061 original size:31 final size:31
Alignment explanation
Indices: 88680026--88680104 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
88680016 CGTTTATAGT
88680026 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
*
88680057 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
*
88680088 AAAGGCTTCGTCCCAGT
1 AAAGGCTTCGGCCCAGT
88680105 AACCGTTAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGAAATGATTTATGA
Found at i:88681439 original size:43 final size:43
Alignment explanation
Indices: 88681348--88681452 Score: 115
Period size: 43 Copynumber: 2.4 Consensus size: 43
88681338 GTCCCAAATG
* * *
88681348 TGGTCTTACATGTAATCACATATCGATGCCACTGTCAAAGACA
1 TGGTCTTACATGCAATCACATAACGATGCCACTGTCAAACACA
* **
88681391 GGGTCTTACATG-AATCACATACACGATGCCGA-TGTCCCACACA
1 TGGTCTTACATGCAATCACATA-ACGATGCC-ACTGTCAAACACA
*
88681434 TGGTCTTCCATGCAATCAC
1 TGGTCTTACATGCAATCAC
88681453 CTATCGTAAA
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
42 9 0.17
43 36 0.69
44 7 0.13
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (43 bp):
TGGTCTTACATGCAATCACATAACGATGCCACTGTCAAACACA
Found at i:88682057 original size:15 final size:15
Alignment explanation
Indices: 88682039--88682068 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
88682029 TAAAAAATTA
88682039 CAATACAAAACATAT
1 CAATACAAAACATAT
*
88682054 CAATCCAAAACATAT
1 CAATACAAAACATAT
88682069 ATTTCATAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.23, G:0.00, T:0.20
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:88693199 original size:60 final size:60
Alignment explanation
Indices: 88693106--88693223 Score: 218
Period size: 60 Copynumber: 2.0 Consensus size: 60
88693096 ATTAGAACAT
*
88693106 CACTTTTACACTTTAGGCGATTTAGTCATTTTTATCAAATTAAGCATTTAAATGATAAAA
1 CACTTTTACACTTTACGCGATTTAGTCATTTTTATCAAATTAAGCATTTAAATGATAAAA
*
88693166 CACTTTTGCACTTTACGCGATTTAGTCATTTTTATCAAATTAAGCATTTAAATGATAA
1 CACTTTTACACTTTACGCGATTTAGTCATTTTTATCAAATTAAGCATTTAAATGATAA
88693224 GATTTCTTAA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 56 1.00
ACGTcount: A:0.35, C:0.14, G:0.10, T:0.41
Consensus pattern (60 bp):
CACTTTTACACTTTACGCGATTTAGTCATTTTTATCAAATTAAGCATTTAAATGATAAAA
Found at i:88695851 original size:35 final size:35
Alignment explanation
Indices: 88695796--88695869 Score: 94
Period size: 35 Copynumber: 2.1 Consensus size: 35
88695786 ATCTATATCT
* * *
88695796 GTATTTGAGATAGGCTTAGGCACAAATATGTATAC
1 GTATCTGAAATAGGCTTAGGCACAAATATGCATAC
* * *
88695831 GTATCTGAAATAGGCTTAGGCCCGAATATGCATAT
1 GTATCTGAAATAGGCTTAGGCACAAATATGCATAC
88695866 GTAT
1 GTAT
88695870 TTGTGATGGG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.31
Consensus pattern (35 bp):
GTATCTGAAATAGGCTTAGGCACAAATATGCATAC
Found at i:88698416 original size:41 final size:41
Alignment explanation
Indices: 88698359--88698440 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
88698349 GGTTGTGATC
88698359 GAAGAGCGTCGGGTTTATTTGTCTAATGTAGTCTCCGCGCT
1 GAAGAGCGTCGGGTTTATTTGTCTAATGTAGTCTCCGCGCT
88698400 GAAGAGCGTCGGGTTTATTTGTCTAATGTAGTCTCCGCGCT
1 GAAGAGCGTCGGGTTTATTTGTCTAATGTAGTCTCCGCGCT
88698441 TGTGGCTAAG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.17, C:0.20, G:0.29, T:0.34
Consensus pattern (41 bp):
GAAGAGCGTCGGGTTTATTTGTCTAATGTAGTCTCCGCGCT
Found at i:88701284 original size:40 final size:40
Alignment explanation
Indices: 88701099--88701270 Score: 233
Period size: 40 Copynumber: 4.3 Consensus size: 40
88701089 GGGCTAAGTC
* * * *
88701099 CCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT
1 CCGAAGGCATTTGTGC-GAGTTACTATAACCGGACTAAGAT
*
88701139 CCGAAGGCATTTGTGCGAGTTAC-ATATCCGGACTAAGAT
1 CCGAAGGCATTTGTGCGAGTTACTATAACCGGACTAAGAT
*
88701178 CCGAAGGCATTTGTGCGAGTTACTATTACCGGACTAAGAT
1 CCGAAGGCATTTGTGCGAGTTACTATAACCGGACTAAGAT
* *
88701218 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATG-T
1 CCGAAGGCATTTGTGCGAGTTACTATAACCGGACTAAGAT
88701257 CCCGAAGGCATTTG
1 -CCGAAGGCATTTG
88701271 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 7, Indels: 6
0.90 0.05 0.04
Matches are distributed among these distances:
39 40 0.33
40 75 0.61
41 7 0.06
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATAACCGGACTAAGAT
Found at i:88701303 original size:79 final size:79
Alignment explanation
Indices: 88701127--88701277 Score: 232
Period size: 79 Copynumber: 1.9 Consensus size: 79
88701117 GTGACCATAT
* *
88701127 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACATATCCGGACTAAGATCCGAAGGCATTTGT
1 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACATAACCGGACTAAGATCCGAAGGCATTTGA
*
88701192 GCGAGTTACTATTA
66 ACGAGTTACTATTA
* *
88701206 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATG-TCCCGAAGGCATTT
1 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTAC-ATAACCGGACTAAGAT-CCGAAGGCATTT
88701270 GAACGAGT
64 GAACGAGT
88701278 AGCTATATCC
Statistics
Matches: 65, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
79 36 0.55
80 29 0.45
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.25
Consensus pattern (79 bp):
CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACATAACCGGACTAAGATCCGAAGGCATTTGA
ACGAGTTACTATTA
Found at i:88713052 original size:40 final size:40
Alignment explanation
Indices: 88712861--88713064 Score: 245
Period size: 40 Copynumber: 5.1 Consensus size: 40
88712851 TCAAATGATG
* *
88712861 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
*
88712901 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* *
88712940 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* *
88712980 TCCGGGTTAAGTCCGGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * ** *
88713020 ACCGGGCTATGTCCCGAAGGCATTTGAACGAGTTGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
88713060 TCCGG
1 TCCGG
88713065 TTAAATTCCG
Statistics
Matches: 141, Mismatches: 17, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
39 35 0.25
40 98 0.70
41 8 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:88713067 original size:79 final size:79
Alignment explanation
Indices: 88712862--88713078 Score: 248
Period size: 79 Copynumber: 2.7 Consensus size: 79
88712852 CAAATGATGT
* *
88712862 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTG-CTATATCCGG-TTAAGATCCGAAGGCATT
*
88712925 TGTGCGAGTTACTAATT
63 TGTGCGAGTTACTAATA
* * *
88712942 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAG-TCCGGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCC-GGTTAAGATCC-GAAGGCATTT
88713005 GTGCGAGTTACT-ATAA
64 GTGCGAGTTACTAAT-A
* **
88713021 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTTGCTATATCCGGTTAA-ATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGTTAAGA-TCCGAAGG
88713079 TACGTGATTC
Statistics
Matches: 117, Mismatches: 12, Indels: 17
0.80 0.08 0.12
Matches are distributed among these distances:
78 5 0.04
79 64 0.55
80 48 0.41
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGTTAAGATCCGAAGGCATTTGT
GCGAGTTACTAATA
Found at i:88720211 original size:39 final size:40
Alignment explanation
Indices: 88720110--88720265 Score: 176
Period size: 40 Copynumber: 3.9 Consensus size: 40
88720100 TCAAATGATG
* *
88720110 TCCGGGCTAAGACCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
88720149 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT
* *
88720190 TCCGGGCTAAG-CCCGAAGGCA-TTGTTACGAGTTACTAAA
1 TCCGGGCTAAGACCCGAAGGCATTTG-TGCGAGTTACTAAT
* * *
88720229 TCCGAGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACT
88720266 GTAACCGAGC
Statistics
Matches: 100, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
38 3 0.03
39 30 0.30
40 55 0.55
41 12 0.12
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:88720274 original size:40 final size:40
Alignment explanation
Indices: 88720110--88720294 Score: 170
Period size: 40 Copynumber: 4.7 Consensus size: 40
88720100 TCAAATGATG
* * * *
88720110 TCCGGGCTAAGACCCGAAGGC-TTTGTGCTAAGTGAC-TATA
1 TCCGAGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTTA-A
88720150 TCCG-GACTAAGAT-CCGAAGGCATTTGTGCGAGTTAC-TAA
1 TCCGAG-CTAAG-TCCCGAAGGCATTTGTGCGAGTTACTTAA
* * *
88720189 TTCCGGGCTAAG-CCCGAAGGCA-TTGTTACGAGTTACTAAA
1 -TCCGAGCTAAGTCCCGAAGGCATTTG-TGCGAGTTACTTAA
*
88720229 TCCGAGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTGTAA
1 TCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-TAA
*
88720270 -CCGAGCTATGTCCCGAAGGCATTTG
1 TCCGAGCTAAGTCCCGAAGGCATTTG
88720295 AACAAGTTGC
Statistics
Matches: 123, Mismatches: 11, Indels: 22
0.79 0.07 0.14
Matches are distributed among these distances:
38 3 0.02
39 29 0.24
40 78 0.63
41 13 0.11
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTTAA
Found at i:88720317 original size:79 final size:76
Alignment explanation
Indices: 88720110--88720327 Score: 199
Period size: 79 Copynumber: 2.8 Consensus size: 76
88720100 TCAAATGATG
* * * * *
88720110 TCCGGGCTAAGACCCGAAGGCTTTGT-GCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGAGCTAAG-CCCGAAGGCATTGTAAC-AAGTTACTATATCCGG-TTAAG-TCCGAAGGCATT
88720174 TGTGCGAGTTACTAA
62 TGTGCGAGTTACTAA
* * * *
88720189 TTCCGGGCTAAGCCCGAAGGCATTGTTACGAGTTACTAAATCCGAGTTAAGTCCCGAAGGCATTT
1 -TCCGAGCTAAGCCCGAAGGCATTGTAACAAGTTACTATATCCG-GTTAAGT-CCGAAGGCATTT
88720254 GTGCGAGTTACTGTAA
63 GTGCGAGTTAC--TAA
* * *
88720270 -CCGAGCTATGTCCCGAAGGCATT-TGAACAAGTTGCTATATCCGGTTAAATTCCGAAGG
1 TCCGAGCTAAG-CCCGAAGGCATTGT-AACAAGTTACTATATCCGGTT-AAGTCCGAAGG
88720328 TACGTGATTC
Statistics
Matches: 117, Mismatches: 13, Indels: 17
0.80 0.09 0.12
Matches are distributed among these distances:
78 1 0.01
79 71 0.61
80 42 0.36
81 3 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (76 bp):
TCCGAGCTAAGCCCGAAGGCATTGTAACAAGTTACTATATCCGGTTAAGTCCGAAGGCATTTGTG
CGAGTTACTAA
Found at i:88724433 original size:35 final size:35
Alignment explanation
Indices: 88724377--88724457 Score: 99
Period size: 35 Copynumber: 2.3 Consensus size: 35
88724367 TGTATATCTA
* * *
88724377 TATCTGTATTTGAAATAGGCTTAGGCCCAAATATG
1 TATCTGTATCTAAAATAGGCTTAAGCCCAAATATG
* *
88724412 TATCTGTATCTAAAATGGGCTTAAGCCCGAATATG
1 TATCTGTATCTAAAATAGGCTTAAGCCCAAATATG
* *
88724447 CATTTGTATCT
1 TATCTGTATCT
88724458 GTGATGGGAT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.36
Consensus pattern (35 bp):
TATCTGTATCTAAAATAGGCTTAAGCCCAAATATG
Found at i:88726340 original size:29 final size:28
Alignment explanation
Indices: 88726297--88726351 Score: 83
Period size: 29 Copynumber: 1.9 Consensus size: 28
88726287 AAGATAAACC
*
88726297 GATTTGGCTTCGGGCCATGCATATCAGCT
1 GATTTGCCTTCGGGCCATG-ATATCAGCT
*
88726326 GATTTGCCTTTGGGCCATGATATCAG
1 GATTTGCCTTCGGGCCATGATATCAG
88726352 TTTTTCGGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 7 0.29
29 17 0.71
ACGTcount: A:0.18, C:0.22, G:0.27, T:0.33
Consensus pattern (28 bp):
GATTTGCCTTCGGGCCATGATATCAGCT
Found at i:88730188 original size:43 final size:43
Alignment explanation
Indices: 88730127--88730224 Score: 169
Period size: 43 Copynumber: 2.3 Consensus size: 43
88730117 AGTAAGACCA
*
88730127 TGGCATTGATATATGTGTGCGAGTAAGACCACATTTAATACGT
1 TGGCATCGATATATGTGTGCGAGTAAGACCACATTTAATACGT
* *
88730170 TGGCATCGATATATGTGTGCGAGTAAGACCACGTTTAATATGT
1 TGGCATCGATATATGTGTGCGAGTAAGACCACATTTAATACGT
88730213 TGGCATCGATAT
1 TGGCATCGATAT
88730225 GTGATTCTGA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 52 1.00
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (43 bp):
TGGCATCGATATATGTGTGCGAGTAAGACCACATTTAATACGT
Found at i:88735917 original size:57 final size:57
Alignment explanation
Indices: 88735829--88735984 Score: 312
Period size: 57 Copynumber: 2.7 Consensus size: 57
88735819 TATCTAAGTG
88735829 GAAATGGGACAAAGTTACTATGAATTTTGTAGCCAATTTACTGTTGACATCGAGTAA
1 GAAATGGGACAAAGTTACTATGAATTTTGTAGCCAATTTACTGTTGACATCGAGTAA
88735886 GAAATGGGACAAAGTTACTATGAATTTTGTAGCCAATTTACTGTTGACATCGAGTAA
1 GAAATGGGACAAAGTTACTATGAATTTTGTAGCCAATTTACTGTTGACATCGAGTAA
88735943 GAAATGGGACAAAGTTACTATGAATTTTGTAGCCAATTTACT
1 GAAATGGGACAAAGTTACTATGAATTTTGTAGCCAATTTACT
88735985 ATGAATTTTG
Statistics
Matches: 99, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 99 1.00
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.32
Consensus pattern (57 bp):
GAAATGGGACAAAGTTACTATGAATTTTGTAGCCAATTTACTGTTGACATCGAGTAA
Found at i:88736072 original size:20 final size:20
Alignment explanation
Indices: 88736047--88736090 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
88736037 TTTTAATTTT
*
88736047 ATAATTCAATAATACCATTG
1 ATAATTCAATAATACCATCG
88736067 ATAATTCAATAATACCATCG
1 ATAATTCAATAATACCATCG
88736087 ATAA
1 ATAA
88736091 AGTCTGACTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.48, C:0.16, G:0.05, T:0.32
Consensus pattern (20 bp):
ATAATTCAATAATACCATCG
Found at i:88742539 original size:27 final size:26
Alignment explanation
Indices: 88742509--88742654 Score: 148
Period size: 27 Copynumber: 5.4 Consensus size: 26
88742499 TGGATAAGTT
*
88742509 GTAGAATTACCAAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGT-AG
* * *
88742536 GTAGAATTATCGAAATAACCCTATAG
1 GTAGAATTACCGAAATACCCCTGTAG
*
88742562 GATAGAATTACCGAAATACCCTTGTAGG
1 G-TAGAATTACCGAAATACCCCTGTA-G
*
88742590 GTAGAAATACCGAAATACCCCTGTAG
1 GTAGAATTACCGAAATACCCCTGTAG
* * * *
88742616 GCTAGAATTATCGAGATACCCTTGTGG
1 G-TAGAATTACCGAAATACCCCTGTAG
*
88742643 GCTAAAATTACC
1 G-TAGAATTACC
88742655 ATTTTGCCCC
Statistics
Matches: 99, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
26 5 0.05
27 92 0.93
28 2 0.02
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.25
Consensus pattern (26 bp):
GTAGAATTACCGAAATACCCCTGTAG
Found at i:88742593 original size:54 final size:54
Alignment explanation
Indices: 88742510--88742640 Score: 172
Period size: 54 Copynumber: 2.4 Consensus size: 54
88742500 GGATAAGTTG
* * * *
88742510 TAGAATTACCAAAATACCCCTGTAAGGTAGAATTATCGAAATAACCCTATAGGA
1 TAGAATTACCGAAATACCCTTGTAAGGTAGAAATACCGAAATAACCCTATAGGA
* * * *
88742564 TAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGC
1 TAGAATTACCGAAATACCCTTGTAAGGTAGAAATACCGAAATAACCCTATAGGA
* *
88742618 TAGAATTATCGAGATACCCTTGT
1 TAGAATTACCGAAATACCCTTGT
88742641 GGGCTAAAAT
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 67 1.00
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.25
Consensus pattern (54 bp):
TAGAATTACCGAAATACCCTTGTAAGGTAGAAATACCGAAATAACCCTATAGGA
Found at i:88743411 original size:31 final size:31
Alignment explanation
Indices: 88743373--88743434 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
88743363 CTCGCTGCAA
* *
88743373 TCTGGTGGCTTCGCCACATATA-TATATCTGT
1 TCTGGTGGCCTAGCCACA-ATACTATATCTGT
88743404 TCTGGTGGCCTAGCCACAATACCTATATCTG
1 TCTGGTGGCCTAGCCACAATA-CTATATCTG
88743435 GTGACTTCGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
30 3 0.11
31 16 0.59
32 8 0.30
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (31 bp):
TCTGGTGGCCTAGCCACAATACTATATCTGT
Found at i:88743475 original size:98 final size:98
Alignment explanation
Indices: 88743306--88743667 Score: 636
Period size: 98 Copynumber: 3.7 Consensus size: 98
88743296 CTCGCTACAA
* * * * *
88743306 TCTGGTGGCCTCGCCACATATATCTGT-TCTGGTGACTTTGTCACAATATCTGGTAGCCTCGCTG
1 TCTGGTGGCCTAGCCACA-ATACCTATATCTGGTGACTTCGTCACAATATCTGGCAGCCTCGCTG
88743370 CAATCTGGTGGCTTCGCCACATATATATATCTGT
65 CAATCTGGTGGCTTCGCCACATATATATATCTGT
*
88743404 TCTGGTGGCCTAGCCACAATACCTATATCTGGTGACTTCGTCACAATATCTGGCAGCCTTGCTGC
1 TCTGGTGGCCTAGCCACAATACCTATATCTGGTGACTTCGTCACAATATCTGGCAGCCTCGCTGC
88743469 AATCTGGTGGCTTCGCCACATATATATATCTGT
66 AATCTGGTGGCTTCGCCACATATATATATCTGT
*
88743502 TCTGGTGGCCTAGCCACAATACCTATATCTGGTGACTTCGTCACAATATCTGGCAGCCTTGCTGC
1 TCTGGTGGCCTAGCCACAATACCTATATCTGGTGACTTCGTCACAATATCTGGCAGCCTCGCTGC
88743567 AATCTGGTGGCTTCGCCACATATATATATCTGT
66 AATCTGGTGGCTTCGCCACATATATATATCTGT
*
88743600 TCTGGTGGCCTAGCCACAATACCTATATCTGGTGACTTCGTCACAATATCTGGCAACCTCGCTGC
1 TCTGGTGGCCTAGCCACAATACCTATATCTGGTGACTTCGTCACAATATCTGGCAGCCTCGCTGC
88743665 AAT
66 AAT
88743668 TTCGATGGTG
Statistics
Matches: 255, Mismatches: 8, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
97 6 0.02
98 249 0.98
ACGTcount: A:0.21, C:0.27, G:0.20, T:0.32
Consensus pattern (98 bp):
TCTGGTGGCCTAGCCACAATACCTATATCTGGTGACTTCGTCACAATATCTGGCAGCCTCGCTGC
AATCTGGTGGCTTCGCCACATATATATATCTGT
Found at i:88743509 original size:31 final size:31
Alignment explanation
Indices: 88743471--88743532 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
88743461 CTTGCTGCAA
* *
88743471 TCTGGTGGCTTCGCCACATATA-TATATCTGT
1 TCTGGTGGCCTAGCCACA-ATACTATATCTGT
88743502 TCTGGTGGCCTAGCCACAATACCTATATCTG
1 TCTGGTGGCCTAGCCACAATA-CTATATCTG
88743533 GTGACTTCGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
30 3 0.11
31 16 0.59
32 8 0.30
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (31 bp):
TCTGGTGGCCTAGCCACAATACTATATCTGT
Found at i:88743607 original size:31 final size:31
Alignment explanation
Indices: 88743569--88743630 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
88743559 CTTGCTGCAA
* *
88743569 TCTGGTGGCTTCGCCACATATA-TATATCTGT
1 TCTGGTGGCCTAGCCACA-ATACTATATCTGT
88743600 TCTGGTGGCCTAGCCACAATACCTATATCTG
1 TCTGGTGGCCTAGCCACAATA-CTATATCTG
88743631 GTGACTTCGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
30 3 0.11
31 16 0.59
32 8 0.30
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (31 bp):
TCTGGTGGCCTAGCCACAATACTATATCTGT
Found at i:88750311 original size:27 final size:27
Alignment explanation
Indices: 88750277--88750422 Score: 177
Period size: 27 Copynumber: 5.4 Consensus size: 27
88750267 TGGATAAGTT
*
88750277 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
88750304 GTAGAATTA-TGAAAATACCCCTGTAGG
1 GTAGAATTACCG-AAATACCCCTGTAGG
* * * *
88750331 ATAGAATTACCAAAATACCCTTGTTGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
88750358 GTAGAAATACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
88750385 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
88750412 GTAAAATTACC
1 GTAGAATTACC
88750423 ATTTTGCCCC
Statistics
Matches: 100, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
26 1 0.01
27 99 0.99
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:88760249 original size:47 final size:47
Alignment explanation
Indices: 88760183--88760468 Score: 563
Period size: 47 Copynumber: 6.1 Consensus size: 47
88760173 GAAATGATAG
88760183 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGA
*
88760230 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGA
88760277 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGA
88760324 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGA
88760371 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGA
88760418 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGA
88760465 TAAG
1 TAAG
88760469 ATATATATGT
Statistics
Matches: 237, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 237 1.00
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGA
Found at i:88760512 original size:63 final size:63
Alignment explanation
Indices: 88760407--88760531 Score: 169
Period size: 63 Copynumber: 2.0 Consensus size: 63
88760397 CGTGAAAGTG
* * * * *
88760407 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGATAAGA
1 TATATATGTGACAAGGCCGAATGGCCAACGTGATGAACGTGAAAGTGTATAAATGTGATAAGA
* * * *
88760470 TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TATATATGTGACAAGGCCGAATGGCCAACGTGATGAACGTGAAAGTGTATAAATGTGATAAG
88760532 TCCCGAAGGG
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
63 53 1.00
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.28
Consensus pattern (63 bp):
TATATATGTGACAAGGCCGAATGGCCAACGTGATGAACGTGAAAGTGTATAAATGTGATAAGA
Found at i:88760707 original size:37 final size:37
Alignment explanation
Indices: 88760650--88760728 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
88760640 CCGAGCTCTA
* * *
88760650 AAGACCCGATGACTATGTGTGGGGATTTTGTCAGGGT
1 AAGACCCGATAACTATGTGTGGAGATTATGTCAGGGT
*
88760687 AAGACCCGATAACT-TCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTAT-GTGTGGAGATTATGTCAGGGT
88760724 AAGAC
1 AAGAC
88760729 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
36 1 0.03
37 36 0.97
ACGTcount: A:0.25, C:0.16, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTATGTGTGGAGATTATGTCAGGGT
Found at i:88763735 original size:28 final size:29
Alignment explanation
Indices: 88763674--88763741 Score: 93
Period size: 28 Copynumber: 2.4 Consensus size: 29
88763664 TATATATTTG
*
88763674 GTAATATAAATGAAAAAAATACAAACTTT
1 GTAATATAAATGAAAAAAATACAAACATT
* * *
88763703 ATAATATAAATG-CAAAATTACAAACATT
1 GTAATATAAATGAAAAAAATACAAACATT
88763731 GTAATATAAAT
1 GTAATATAAAT
88763742 TAGATGCAGT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 23 0.68
29 11 0.32
ACGTcount: A:0.57, C:0.07, G:0.06, T:0.29
Consensus pattern (29 bp):
GTAATATAAATGAAAAAAATACAAACATT
Found at i:88769380 original size:13 final size:13
Alignment explanation
Indices: 88769364--88769388 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
88769354 AAGAAAAAAC
88769364 TAAAAATTCCAAA
1 TAAAAATTCCAAA
88769377 TAAAAATTCCAA
1 TAAAAATTCCAA
88769389 TTGATTAAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.16, G:0.00, T:0.24
Consensus pattern (13 bp):
TAAAAATTCCAAA
Found at i:88770467 original size:18 final size:18
Alignment explanation
Indices: 88770444--88770480 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
88770434 AAAATAGCGG
88770444 AATAAATTGAGAAATTGA
1 AATAAATTGAGAAATTGA
88770462 AATAAATTGAGAAATTGA
1 AATAAATTGAGAAATTGA
88770480 A
1 A
88770481 CACACAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.57, C:0.00, G:0.16, T:0.27
Consensus pattern (18 bp):
AATAAATTGAGAAATTGA
Found at i:88773088 original size:14 final size:14
Alignment explanation
Indices: 88773069--88773101 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
88773059 TAAAATAAAT
88773069 ATTTT-ATTAAATTA
1 ATTTTAATT-AATTA
88773083 ATTTTAATTAATTA
1 ATTTTAATTAATTA
88773097 ATTTT
1 ATTTT
88773102 CCAATTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 15 0.83
15 3 0.17
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (14 bp):
ATTTTAATTAATTA
Found at i:88773259 original size:25 final size:25
Alignment explanation
Indices: 88773231--88773279 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
88773221 TGGGTTAATG
*
88773231 TACCCGTCGTGTAAGTAATTAAAGA
1 TACCCATCGTGTAAGTAATTAAAGA
*
88773256 TACCCATCGTTTAAGTAATTAAAG
1 TACCCATCGTGTAAGTAATTAAAG
88773280 CTTCTATCTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (25 bp):
TACCCATCGTGTAAGTAATTAAAGA
Found at i:88775797 original size:28 final size:27
Alignment explanation
Indices: 88775721--88775809 Score: 85
Period size: 28 Copynumber: 3.3 Consensus size: 27
88775711 GATATGACAT
* * *
88775721 TGTGCTATGTGAAATAAGACCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGAA
* *
88775748 --T-CTAGGTGAAATAAGTCAATGGTAA
1 TGTGCTAAGTGAAATAAGTCCATGG-AA
*
88775773 TGTGCTAAGTGAAATAAGTCCATGGCAT
1 TGTGCTAAGTGAAATAAGTCCATGG-AA
88775801 TGTGCTAAG
1 TGTGCTAAG
88775810 CGAGAATTTT
Statistics
Matches: 50, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
24 18 0.36
25 2 0.04
27 1 0.02
28 29 0.58
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.28
Consensus pattern (27 bp):
TGTGCTAAGTGAAATAAGTCCATGGAA
Found at i:88775912 original size:51 final size:51
Alignment explanation
Indices: 88775836--88776035 Score: 330
Period size: 51 Copynumber: 3.9 Consensus size: 51
88775826 TGAACCTGAG
*
88775836 GAATAAAATAGCTTTAGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
88775887 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCATTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
88775938 GAATAAAATAGCTTTGGACACAAATGTAGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
*
88775989 GAATAAAATAGCTTTGG-CTACAAGGGTGGTACTATGTGAAGGCCACT
1 GAATAAAATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGGCCACT
88776036 GTGTATCCAT
Statistics
Matches: 138, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
50 1 0.01
51 137 0.99
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:88780340 original size:42 final size:42
Alignment explanation
Indices: 88780223--88780340 Score: 130
Period size: 43 Copynumber: 2.8 Consensus size: 42
88780213 CGGAAAGCTC
** *
88780223 GTACGATGCCAACGTCCCAGATGTGGTCTTACAAGTAATCAA
1 GTACGATGCCAACGTCCCAGACATGGTCTTACAAGAAATCAA
* * * * *
88780265 ATATCGATGCC-ACTATCCCAGACAGGGTTTTACACGAAATCAA
1 GTA-CGATGCCAAC-GTCCCAGACATGGTCTTACAAGAAATCAA
*
88780308 GTACGATGCCAACGTCCCAGGCATGGTCTTACA
1 GTACGATGCCAACGTCCCAGACATGGTCTTACA
88780341 TGATAACACA
Statistics
Matches: 60, Mismatches: 13, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
42 27 0.45
43 33 0.55
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (42 bp):
GTACGATGCCAACGTCCCAGACATGGTCTTACAAGAAATCAA
Found at i:88781498 original size:27 final size:27
Alignment explanation
Indices: 88781306--88781500 Score: 171
Period size: 27 Copynumber: 7.3 Consensus size: 27
88781296 TTAGTTTACC
** * *
88781306 AAATTACTGAAATACCCTCGATTAGCA
1 AAATTACCAAAATACCCTCGATTTGTA
*
88781333 AAATTACCAAAATACCCTAG-TTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * **
88781359 AAATTACCAAAATATCCT-TAGTTTAAA
1 AAATTACCAAAATACCCTCGA-TTTGTA
*
88781386 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACCAAAATACCCTC-GATTTGTA
** *
88781413 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
** * *
88781440 AAATTACTGAAATATCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
88781467 AAATTACCAAAGTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
*
88781494 GAATTAC
1 AAATTAC
88781501 TATTTTACCC
Statistics
Matches: 137, Mismatches: 26, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
26 21 0.15
27 114 0.83
28 2 0.01
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:88781536 original size:27 final size:27
Alignment explanation
Indices: 88781306--88781537 Score: 125
Period size: 27 Copynumber: 8.6 Consensus size: 27
88781296 TTAGTTTACC
*
88781306 AAATTACTGAAATACCCTCGA-TTAGCA
1 AAATTACTGAAATACCCTCGACTTA-TA
** * * *
88781333 AAATTACCAAAATACCCTAG-TTTGTA
1 AAATTACTGAAATACCCTCGACTTATA
** * * * *
88781359 AAATTACCAAAATATCCT-TAGTTTAAA
1 AAATTACTGAAATACCCTCGA-CTTATA
** * * *
88781386 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACTGAAATACCCTC-GACTTATA
*
88781413 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGACTTATA
* *
88781440 AAATTACTGAAATATCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGACTTATA
* *
88781467 AAATTAC-CAAAGTACCCTCGATTTATA
1 AAATTACTGAAA-TACCCTCGACTTATA
* ** * *
88781494 GAATTACT-ATTTTACCCTCGATTTACA
1 AAATTACTGA-AATACCCTCGACTTATA
*
88781521 AAATTATTGAAATACCC
1 AAATTACTGAAATACCC
88781538 ATTTAGGGTA
Statistics
Matches: 164, Mismatches: 31, Indels: 20
0.76 0.14 0.09
Matches are distributed among these distances:
26 21 0.13
27 140 0.85
28 3 0.02
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGACTTATA
Found at i:88781644 original size:54 final size:54
Alignment explanation
Indices: 88781522--88781662 Score: 162
Period size: 54 Copynumber: 2.6 Consensus size: 54
88781512 CGATTTACAA
* * * * *
88781522 AATTATTGAAATACCCAT-TTAGGGTAGAATTATTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCC-TCGTAAGGTAGAATTACTAAAATACCCCTGTAGGGTAG
88781576 AATTACTGAAATACCC-CTGTAAGGTAGAATTACTAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTC-GTAAGGTAGAATTACTAAAATACCCCTGTAGGGTAG
* * *
88781630 AATTAAC-GAGATACCCTCGTGAGGTAAAATTAC
1 AATT-ACTGAAATACCCTCGTAAGGTAGAATTAC
88781663 CATTTTGCCC
Statistics
Matches: 75, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
54 72 0.96
55 3 0.04
ACGTcount: A:0.37, C:0.16, G:0.19, T:0.28
Consensus pattern (54 bp):
AATTACTGAAATACCCTCGTAAGGTAGAATTACTAAAATACCCCTGTAGGGTAG
Found at i:88781645 original size:27 final size:27
Alignment explanation
Indices: 88781522--88781634 Score: 172
Period size: 27 Copynumber: 4.2 Consensus size: 27
88781512 CGATTTACAA
* * *
88781522 AATTATTGAAATACCCATTTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
88781549 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
88781576 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
88781603 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
88781630 AATTA
1 AATTA
88781635 ACGAGATACC
Statistics
Matches: 80, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 80 1.00
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.29
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:88782031 original size:22 final size:22
Alignment explanation
Indices: 88781999--88782057 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
88781989 CCCGTTATCG
*
88781999 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
88782021 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
88782043 ATGGCTTAGTGCCAA
1 ATGGCTTTGTGCCAA
88782058 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:88782245 original size:27 final size:26
Alignment explanation
Indices: 88782215--88782322 Score: 90
Period size: 27 Copynumber: 4.0 Consensus size: 26
88782205 ATTCTGTTAA
* *
88782215 GTGGCTTTGCCACATTATCTAATTCTG
1 GTGGCTATGCCACAATATCT-ATTCTG
*
88782242 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTATGCCAC-AATATCTATTCTG
* * * *
88782269 GTGGCTCTGCCACAATATTTGTATCTA
1 GTGGCTATGCCACAATATCTAT-TCTG
* * **
88782296 GTGACTCTATCACAATATCTATTCTG
1 GTGGCTATGCCACAATATCTATTCTG
88782322 G
1 G
88782323 CAGCCATGCT
Statistics
Matches: 67, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
26 12 0.18
27 49 0.73
28 6 0.09
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (26 bp):
GTGGCTATGCCACAATATCTATTCTG
Found at i:88782457 original size:6 final size:6
Alignment explanation
Indices: 88782440--88782555 Score: 58
Period size: 6 Copynumber: 18.8 Consensus size: 6
88782430 TTGCATTCAC
* * * * *
88782440 ATTCTA ATTCTG ATTCTG -TTACCTG ATACTG ATTTTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * * *
88782490 ATTCTA ATTCTG ATTTTG ATTCTG ATTCTG -TCACCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
88782539 ATTCTC ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCT
88782556 AGTTCTAATA
Statistics
Matches: 82, Mismatches: 19, Indels: 18
0.69 0.16 0.15
Matches are distributed among these distances:
5 4 0.05
6 67 0.82
7 8 0.10
8 3 0.04
ACGTcount: A:0.20, C:0.18, G:0.12, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:88782503 original size:25 final size:25
Alignment explanation
Indices: 88782440--88782504 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
88782430 TTGCATTCAC
* *
88782440 ATTCTAATTCTGATTCTGTTACCTG
1 ATTCTAATTCTGATTCTGTCACCTA
* * *
88782465 ATACTGATTTTGATTCTGTCACCTA
1 ATTCTAATTCTGATTCTGTCACCTA
88782490 ATTCTAATTCTGATT
1 ATTCTAATTCTGATT
88782505 TTGATTCTGA
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.23, C:0.18, G:0.11, T:0.48
Consensus pattern (25 bp):
ATTCTAATTCTGATTCTGTCACCTA
Found at i:88782503 original size:37 final size:37
Alignment explanation
Indices: 88782462--88782555 Score: 125
Period size: 37 Copynumber: 2.5 Consensus size: 37
88782452 ATTCTGTTAC
*
88782462 CTGATACTGATTTTGATTCTGTCACCTAATTCTAATT
1 CTGATTCTGATTTTGATTCTGTCACCTAATTCTAATT
* * * * *
88782499 CTGATTTTGATTCTGATTCTGTCACCTGATTTTGATT
1 CTGATTCTGATTTTGATTCTGTCACCTAATTCTAATT
*
88782536 CTGATTCTCATTTTGATTCT
1 CTGATTCTGATTTTGATTCT
88782556 AGTTCTAATA
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.19, C:0.18, G:0.13, T:0.50
Consensus pattern (37 bp):
CTGATTCTGATTTTGATTCTGTCACCTAATTCTAATT
Found at i:88800082 original size:46 final size:46
Alignment explanation
Indices: 88800008--88800136 Score: 147
Period size: 46 Copynumber: 2.8 Consensus size: 46
88799998 GGTGGTATGT
* *
88800008 GAGCCAATGTAAGACATGTTTGGGACATGCATCGGCCA-CA-ACATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCATCAGACA--A
* * * *
88800054 GTGCCAGTGTAAGACATGTCTGGGACATGCATCTG-TATTGAGACAA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCA-TCAGACAA
*
88800100 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCC
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC
88800137 TCGGGATATA
Statistics
Matches: 69, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
45 1 0.01
46 64 0.93
47 1 0.01
48 3 0.04
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCATCAGACAA
Found at i:88800283 original size:49 final size:49
Alignment explanation
Indices: 88800196--88800326 Score: 163
Period size: 49 Copynumber: 2.7 Consensus size: 49
88800186 TGTTAGGTGT
* * * *
88800196 CAGTGTAAGACCTTTCTGGGACATGGCATCAACATCGATAAATGAGAGC
1 CAGTGTAAGACCTATCTGGGACATGGCATCGACATCGATAAATAAAAGC
* * * * *
88800245 CAGTGCAAGACCTATCTGGGACATGGCATCGGCCTCGATATATAAAAGT
1 CAGTGTAAGACCTATCTGGGACATGGCATCGACATCGATAAATAAAAGC
* *
88800294 CAGTATAAGACCTATCTGGGATATGGCATCGAC
1 CAGTGTAAGACCTATCTGGGACATGGCATCGAC
88800327 TTTAATGTGC
Statistics
Matches: 69, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
49 69 1.00
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.23
Consensus pattern (49 bp):
CAGTGTAAGACCTATCTGGGACATGGCATCGACATCGATAAATAAAAGC
Found at i:88803404 original size:26 final size:26
Alignment explanation
Indices: 88803375--88803427 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
88803365 TACGTGTTGC
88803375 TAACATCAACACTTTCCTAGTTACTA
1 TAACATCAACACTTTCCTAGTTACTA
*
88803401 TAACATCAACACTTTCCTATTTACTA
1 TAACATCAACACTTTCCTAGTTACTA
88803427 T
1 T
88803428 GCTTTATGCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.34, C:0.26, G:0.02, T:0.38
Consensus pattern (26 bp):
TAACATCAACACTTTCCTAGTTACTA
Found at i:88804625 original size:2 final size:2
Alignment explanation
Indices: 88804618--88804674 Score: 100
Period size: 2 Copynumber: 29.5 Consensus size: 2
88804608 ACTTTATTTT
88804618 GA GA GA GA GA GA GA G- GA -A GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
88804658 GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA G
88804675 NNNNNNNNNN
Statistics
Matches: 53, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
1 2 0.04
2 51 0.96
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:88804702 original size:6 final size:6
Alignment explanation
Indices: 88804691--88804745 Score: 60
Period size: 6 Copynumber: 9.3 Consensus size: 6
88804681 NNNNNNNNNN
* * *
88804691 GAGGGA GAGGGA GTGGCA GA--GA GAGGGA GAGGGA GGAGAGA GAGGGA
1 GAGGGA GAGGGA GAGGGA GAGGGA GAGGGA GAGGGA -GAGGGA GAGGGA
88804738 GAGGGA GA
1 GAGGGA GA
88804746 TTTAGGTGTG
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
4 3 0.08
6 32 0.80
7 5 0.12
ACGTcount: A:0.35, C:0.02, G:0.62, T:0.02
Consensus pattern (6 bp):
GAGGGA
Found at i:88804732 original size:19 final size:20
Alignment explanation
Indices: 88804691--88804744 Score: 83
Period size: 19 Copynumber: 2.6 Consensus size: 20
88804681 NNNNNNNNNN
88804691 GAGGGAGAGGGAGTGGCAGAGA
1 GAGGGAGAGGGA--GGCAGAGA
88804713 GAGGGAGAGGGAGG-AGAGA
1 GAGGGAGAGGGAGGCAGAGA
88804732 GAGGGAGAGGGAG
1 GAGGGAGAGGGAG
88804745 ATTTAGGTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
19 18 0.56
20 2 0.06
22 12 0.38
ACGTcount: A:0.33, C:0.02, G:0.63, T:0.02
Consensus pattern (20 bp):
GAGGGAGAGGGAGGCAGAGA
Found at i:88805503 original size:31 final size:31
Alignment explanation
Indices: 88805468--88805535 Score: 118
Period size: 31 Copynumber: 2.2 Consensus size: 31
88805458 TTTGTTATTG
*
88805468 TAGTCACTCTTGTTAGATAAGTTGTCAATTT
1 TAGTCACTCTTATTAGATAAGTTGTCAATTT
*
88805499 TAGTCACTCTTATTGGATAAGTTGTCAATTT
1 TAGTCACTCTTATTAGATAAGTTGTCAATTT
88805530 TAGTCA
1 TAGTCA
88805536 GTCTAAGTCG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.26, C:0.13, G:0.16, T:0.44
Consensus pattern (31 bp):
TAGTCACTCTTATTAGATAAGTTGTCAATTT
Found at i:88805655 original size:31 final size:31
Alignment explanation
Indices: 88805589--88805660 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 31
88805579 TAGAATAACT
*
88805589 AAAATTAACAACTTATCTAACGAGAGTGACT
1 AAAATTAACAACTTATCTAACGAGAGTGACA
* * *
88805620 AAAATTGACAACTTATCT-ACTAGGAGTGGCA
1 AAAATTAACAACTTATCTAACGA-GAGTGACA
88805651 AAAA-TAACAA
1 AAAATTAACAA
88805661 TTTTTTTAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
30 8 0.23
31 27 0.77
ACGTcount: A:0.47, C:0.15, G:0.14, T:0.24
Consensus pattern (31 bp):
AAAATTAACAACTTATCTAACGAGAGTGACA
Found at i:88812567 original size:7 final size:7
Alignment explanation
Indices: 88812555--88812592 Score: 76
Period size: 7 Copynumber: 5.4 Consensus size: 7
88812545 GTTCTAAGGC
88812555 GTTTCTT
1 GTTTCTT
88812562 GTTTCTT
1 GTTTCTT
88812569 GTTTCTT
1 GTTTCTT
88812576 GTTTCTT
1 GTTTCTT
88812583 GTTTCTT
1 GTTTCTT
88812590 GTT
1 GTT
88812593 AAGGAATGCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.00, C:0.13, G:0.16, T:0.71
Consensus pattern (7 bp):
GTTTCTT
Found at i:88830398 original size:78 final size:78
Alignment explanation
Indices: 88830266--88830420 Score: 292
Period size: 78 Copynumber: 2.0 Consensus size: 78
88830256 TGTTCATCCT
*
88830266 TTTTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAAGGAGTTCTTGCTTCATGTTTGGTTT
1 TTTTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAAGGAGTTCTTACTTCATGTTTGGTTT
*
88830331 GGAAGAGGATTAG
66 GGAAAAGGATTAG
88830344 TTTTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAAGGAGTTCTTACTTCATGTTTGGTTT
1 TTTTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAAGGAGTTCTTACTTCATGTTTGGTTT
88830409 GGAAAAGGATTA
66 GGAAAAGGATTA
88830421 AGAGGAGGTT
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
78 75 1.00
ACGTcount: A:0.26, C:0.10, G:0.26, T:0.37
Consensus pattern (78 bp):
TTTTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAAGGAGTTCTTACTTCATGTTTGGTTT
GGAAAAGGATTAG
Found at i:88836420 original size:40 final size:40
Alignment explanation
Indices: 88836345--88836566 Score: 304
Period size: 40 Copynumber: 5.6 Consensus size: 40
88836335 AACCCAAGTA
* * * *
88836345 CCTTTGGGAATTAG-CCGAATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* ** *
88836384 CCTTCGAGTTTTAGCCCGGATACAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
88836424 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* * *
88836464 CCTTCGGGACTTAGCCCGAATATAGTCACTAGCGCAAAGG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
88836504 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
88836544 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
88836567 CATCCGAGTA
Statistics
Matches: 161, Mismatches: 20, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
39 10 0.06
40 150 0.93
41 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:88839432 original size:20 final size:20
Alignment explanation
Indices: 88839394--88839432 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
88839384 GTTGAAATGG
** *
88839394 CCACACGGGTGTGTTCCCTT
1 CCACACGGGCATGTGCCCTT
88839414 CCACACGGGCATGTGCCCT
1 CCACACGGGCATGTGCCCT
88839433 ATTTCAAAGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.13, C:0.38, G:0.26, T:0.23
Consensus pattern (20 bp):
CCACACGGGCATGTGCCCTT
Found at i:88849766 original size:29 final size:27
Alignment explanation
Indices: 88849748--88849817 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
88849738 ATATTAAGTC
88849748 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
88849775 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
88849803 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
88849818 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:88849811 original size:28 final size:28
Alignment explanation
Indices: 88849748--88849845 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
88849738 ATATTAAGTC
*
88849748 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
88849775 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
88849803 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
88849832 CGCACACTTAGTGC
1 CGCACACTTAGTGC
88849846 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:88860466 original size:37 final size:37
Alignment explanation
Indices: 88860416--88860494 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
88860406 TTATTACGAA
* * * **
88860416 GTCTTACTCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGACATCGG
*
88860453 GTCTTACCCGGACAAAATCCCCACACGTAGACATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGACATCGG
88860490 GTCTT
1 GTCTT
88860495 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGACATCGG
Found at i:88860700 original size:47 final size:47
Alignment explanation
Indices: 88860615--88860741 Score: 148
Period size: 47 Copynumber: 2.7 Consensus size: 47
88860605 CTTCGGGACT
* * * *
88860615 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
* * * *
88860662 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
* *
88860709 TATCTCATATATGCA-TGTTCACATCCATCACAT
1 TATCACATATATACACT-TTCACATCCATCACAT
88860742 AGAATCCTAA
Statistics
Matches: 67, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
46 1 0.01
47 66 0.99
ACGTcount: A:0.27, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
Found at i:88870644 original size:28 final size:29
Alignment explanation
Indices: 88870602--88870716 Score: 121
Period size: 29 Copynumber: 4.0 Consensus size: 29
88870592 TACCTGTATT
* * *
88870602 TGGCCTATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
88870630 TGGCCCATTAGGCCCAAATCA-ACTAT-ATA
1 TGGCCCATTAGGCCCAAATCACA-T-TCATA
* *
88870659 TGGCCCATTAGGCCCAAATTACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
88870688 TGGCCCATAAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
88870716 T
1 T
88870717 TCATGCTCAC
Statistics
Matches: 75, Mismatches: 7, Indels: 10
0.82 0.08 0.11
Matches are distributed among these distances:
28 26 0.35
29 47 0.63
30 2 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:88870966 original size:8 final size:8
Alignment explanation
Indices: 88870926--88870968 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
88870916 GTAGCCAAAC
*
88870926 TTTCAGCT
1 TTTCGGCT
*
88870934 TTTCGGCA
1 TTTCGGCT
*
88870942 TTTCGGCA
1 TTTCGGCT
*
88870950 TTTCAGCT
1 TTTCGGCT
88870958 TTTCGGCT
1 TTTCGGCT
88870966 TTT
1 TTT
88870969 GCCAATCTAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.09, C:0.23, G:0.19, T:0.49
Consensus pattern (8 bp):
TTTCGGCT
Found at i:88875197 original size:28 final size:28
Alignment explanation
Indices: 88875165--88875249 Score: 118
Period size: 28 Copynumber: 3.0 Consensus size: 28
88875155 TACTTGTATC
* *
88875165 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
*
88875193 TGGCCCATTAGGCCCAAATCACATT-TTA
1 TGGCCCATTAGGCCC-AATCACATTCATA
*
88875221 TGGCCCATTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
88875249 T
1 T
88875250 TCATGCTCAC
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
27 8 0.16
28 34 0.68
29 8 0.16
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.28
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:88877175 original size:80 final size:80
Alignment explanation
Indices: 88877053--88877203 Score: 284
Period size: 80 Copynumber: 1.9 Consensus size: 80
88877043 GTCCAAAGAG
*
88877053 CAAAAGAATCTAAGAATAATTATTTGTATAGTATGATTATGAATGAAATGGAAAGAATAAAAGAA
1 CAAAAGAATCTAAGAATAATTATTTGTATAGTATGATCATGAATGAAATGGAAAGAATAAAAGAA
88877118 TATTTGAAAGAAAGT
66 TATTTGAAAGAAAGT
*
88877133 CAAAAGAATCTAAGAATAATTATTTGTATAGTATTATCATGAATGAAATGGAAAGAATAAAAGAA
1 CAAAAGAATCTAAGAATAATTATTTGTATAGTATGATCATGAATGAAATGGAAAGAATAAAAGAA
88877198 TATTTG
66 TATTTG
88877204 CTCAATATGA
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
80 69 1.00
ACGTcount: A:0.50, C:0.03, G:0.17, T:0.30
Consensus pattern (80 bp):
CAAAAGAATCTAAGAATAATTATTTGTATAGTATGATCATGAATGAAATGGAAAGAATAAAAGAA
TATTTGAAAGAAAGT
Found at i:88880146 original size:28 final size:28
Alignment explanation
Indices: 88880115--88880170 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
88880105 ATCTTTATAG
*
88880115 GGAAAGCCTGCAGGTTTTTGTATTATGA
1 GGAAAGACTGCAGGTTTTTGTATTATGA
88880143 GGAAAGACTGCAGGTTTTTGTATTATGA
1 GGAAAGACTGCAGGTTTTTGTATTATGA
88880171 CCTTTCGTGC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.27, C:0.09, G:0.29, T:0.36
Consensus pattern (28 bp):
GGAAAGACTGCAGGTTTTTGTATTATGA
Found at i:88881778 original size:46 final size:46
Alignment explanation
Indices: 88881717--88881890 Score: 167
Period size: 46 Copynumber: 3.8 Consensus size: 46
88881707 ATTTGGGCAT
* * **
88881717 CGAACTTGTTAAGTTGAGTTTGAGTTCACTTATGGATGCGAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
** * *
88881763 CGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATAT-AACTAG-GCA--TC
1 CGAACTCGTTGAGTTGAGTCCGAGTTC---ACTTATGGA-T-GCGAATGTC
* * *
88881810 CGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
*
88881856 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
88881891 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
43 1 0.01
44 7 0.07
45 1 0.01
46 58 0.56
47 27 0.26
48 1 0.01
49 7 0.07
50 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
Found at i:88889780 original size:67 final size:66
Alignment explanation
Indices: 88889669--88889852 Score: 221
Period size: 67 Copynumber: 2.8 Consensus size: 66
88889659 AATCAAGTTC
* **
88889669 ATGCAAATATATATAAATAATTGAAGCTGATACAAGAATTGAAATTCAATACAAAATGGGATACA
1 ATGC-AATATATATAAATAATTGAAGCTGATACAAGAATGGAAATTCAATACAAAATAAGATACA
88889734 TA
65 TA
* ** * *
88889736 ATGCAGATATATATAAATAACT-AAAATCGATACAAGAATGGAAATTCAATGCGAAATAAGATAC
1 ATGCA-ATATATATAAATAATTGAAGCT-GATACAAGAATGGAAATTCAATACAAAATAAGATAC
88889800 ATA
64 ATA
* * *
88889803 AT--AATATATGTAAATAATTGAAGCTGATACAAGAATGAAAAGTCAATACA
1 ATGCAATATATATAAATAATTGAAGCTGATACAAGAATGGAAATTCAATACA
88889853 TAATTTACAT
Statistics
Matches: 98, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
64 35 0.36
65 4 0.04
66 4 0.04
67 55 0.56
ACGTcount: A:0.52, C:0.09, G:0.14, T:0.26
Consensus pattern (66 bp):
ATGCAATATATATAAATAATTGAAGCTGATACAAGAATGGAAATTCAATACAAAATAAGATACAT
A
Found at i:88891686 original size:48 final size:48
Alignment explanation
Indices: 88891605--88891969 Score: 437
Period size: 48 Copynumber: 7.6 Consensus size: 48
88891595 GTACCAATGG
* * ** *
88891605 CATGTCCCCGACATGGTCTTACATGAATC-CACATATCATCGCCGATGC
1 CATGTCCCAGACATGGTCTTACA-CAGGCACATATATCATCGCCGATGC
*** * * *
88891653 CATGTCCCAGACATGGTCTTACGTTGGGACACATATCATTGCCGATGC
1 CATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCGATGC
* * * *
88891701 CATGTCCCAGACATGGTCTTACACTGGCACATATATCATTGCCAACGC
1 CATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCGATGC
* *
88891749 CATGTCCCAGACATGGTCTTACACAGGCACATATATCATTGCTGATGC
1 CATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCGATGC
* *
88891797 CATGTTCCAGACATGGTCTTACACAGGCACATATTTCATCGCCGATGC
1 CATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCGATGC
* * *
88891845 CATGTCCCAGACATAGTCTTTCACAGTCACATATATCATCGCCGATGC
1 CATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCGATGC
* * *
88891893 CATGTCCTAGACATGGTATTACACAGGCACATATATCATGGCC-ATTGC
1 CATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCGA-TGC
* * * *
88891941 CATGTCCTATAAATGGTCTTACGCAGGCA
1 CATGTCCCAGACATGGTCTTACACAGGCA
88891970 TATTTAGCAC
Statistics
Matches: 278, Mismatches: 37, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
47 1 0.00
48 277 1.00
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (48 bp):
CATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCGATGC
Found at i:88894892 original size:27 final size:27
Alignment explanation
Indices: 88894854--88894905 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
88894844 TCGCGAATGT
* *
88894854 TTGACCCGCGAAAAACTCTTCCGATGA
1 TTGACCAGCGAAAAAATCTTCCGATGA
88894881 TTGACCAGCGAAAAAATCTTCCGAT
1 TTGACCAGCGAAAAAATCTTCCGAT
88894906 TCAGAATCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (27 bp):
TTGACCAGCGAAAAAATCTTCCGATGA
Found at i:88896531 original size:29 final size:29
Alignment explanation
Indices: 88896469--88896535 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
88896459 AATCAACCGT
*
88896469 GCACACTTAGTGCCATGTACTTTAAACTC
1 GCACACTTAGTGCCATGCACTTTAAACTC
* **
88896498 ACACACTTAGTGCCATGCA-TTTCAAGTTC
1 GCACACTTAGTGCCATGCACTTT-AAACTC
88896527 GCACACTTA
1 GCACACTTA
88896536 CCTTTTCCGC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.09
29 29 0.91
ACGTcount: A:0.28, C:0.28, G:0.13, T:0.30
Consensus pattern (29 bp):
GCACACTTAGTGCCATGCACTTTAAACTC
Found at i:88896649 original size:174 final size:174
Alignment explanation
Indices: 88896357--88896684 Score: 593
Period size: 174 Copynumber: 1.9 Consensus size: 174
88896347 AACTCAAGGT
* *
88896357 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* * * *
88896422 GAAAATATATATTGAGTTTGCACACATAGTGCTTAATAATCAACCGTGCACACTTAGTGCCATGT
66 GAAAATATATATTGAGTTCGCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGC
88896487 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
88896531 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
88896596 GAAAATATATATTGGGTTCGCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGAGTTCGCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGC
88896661 ACTTTAAACTCACACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
88896685 TGTACAATTT
Statistics
Matches: 147, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 147 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGAGTTCGCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:88896678 original size:29 final size:29
Alignment explanation
Indices: 88896644--88896715 Score: 90
Period size: 29 Copynumber: 2.5 Consensus size: 29
88896634 ATCAACCGCG
* * *
88896644 CACACTTAGTGCCATGCACTTTAAACTCA
1 CACACTTAGTGCCATACAATTTAAACCCA
** *
88896673 CACACTTAGTGCTGTACAATTTAAACCCG
1 CACACTTAGTGCCATACAATTTAAACCCA
88896702 CACACTTAGTGCCA
1 CACACTTAGTGCCA
88896716 ATCTCATGAC
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.31, C:0.31, G:0.12, T:0.26
Consensus pattern (29 bp):
CACACTTAGTGCCATACAATTTAAACCCA
Found at i:88899417 original size:224 final size:224
Alignment explanation
Indices: 88899027--88899473 Score: 876
Period size: 224 Copynumber: 2.0 Consensus size: 224
88899017 TGCAGCTTGG
88899027 TACCCAAAGCTTCTTGCAATTTCTTCCAAAATCGCGAGGTGAATCTCGGATCTCTATCTGACACG
1 TACCCAAAGCTTCTTGCAATTTCTTCCAAAATCGCGAGGTGAATCTCGGATCTCTATCTGACACG
88899092 ATAGAAATAGGTACTCCATGTAATCTCACAATCTGAGAAACATACAATTCGGCTAGTTTATCCAA
66 ATAGAAATAGGTACTCCATGTAATCTCACAATCTGAGAAACATACAATTCGGCTAGTTTATCCAA
*
88899157 TGAAAAATCCGTACGCACGGGGATAAAGTGAGCCGACTTAGTCAGTCTATCAACAACAACCCAAA
131 TGAAAAATCCGTACGCACGGGGATAAAGTGAGCCGACTTAGTCAGTCTATCAACAACAACCAAAA
*
88899222 TCGCATCCTTCTTACTTGTTGACAATGGT
196 TCGCATCCTTCTTACTTGCTGACAATGGT
88899251 TACCCAAAGCTTCTTGCAATTTCTTCCAAAATCGCGAGGTGAATCTCGGATCTCTATCTGACACG
1 TACCCAAAGCTTCTTGCAATTTCTTCCAAAATCGCGAGGTGAATCTCGGATCTCTATCTGACACG
88899316 ATAGAAATAGGTACTCCATGTAATCTCACAATCTGAGAAACATACAATTCGGCTAGTTTATCCAA
66 ATAGAAATAGGTACTCCATGTAATCTCACAATCTGAGAAACATACAATTCGGCTAGTTTATCCAA
88899381 TGAAAAATCCGTACGCACGGGGATAAAGTGAGCCGACTTAGTCAGTCTATCAACAACAACCAAAA
131 TGAAAAATCCGTACGCACGGGGATAAAGTGAGCCGACTTAGTCAGTCTATCAACAACAACCAAAA
88899446 TCGCATCCTTCTTACTTGCTGACAATGG
196 TCGCATCCTTCTTACTTGCTGACAATGG
88899474 CAGTCCGGAC
Statistics
Matches: 221, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
224 221 1.00
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.26
Consensus pattern (224 bp):
TACCCAAAGCTTCTTGCAATTTCTTCCAAAATCGCGAGGTGAATCTCGGATCTCTATCTGACACG
ATAGAAATAGGTACTCCATGTAATCTCACAATCTGAGAAACATACAATTCGGCTAGTTTATCCAA
TGAAAAATCCGTACGCACGGGGATAAAGTGAGCCGACTTAGTCAGTCTATCAACAACAACCAAAA
TCGCATCCTTCTTACTTGCTGACAATGGT
Found at i:88904796 original size:40 final size:40
Alignment explanation
Indices: 88904696--88904960 Score: 293
Period size: 40 Copynumber: 6.7 Consensus size: 40
88904686 GCTCCTCGTT
* * * *
88904696 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* **
88904736 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
88904775 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
88904815 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
88904855 CAAAGGCCTTCGGGGCTTAACCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
88904895 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
88904936 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
88904961 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 24, Indels: 8
0.86 0.10 0.03
Matches are distributed among these distances:
39 36 0.18
40 150 0.76
41 11 0.06
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:88904920 original size:80 final size:79
Alignment explanation
Indices: 88904663--88904960 Score: 266
Period size: 80 Copynumber: 3.7 Consensus size: 79
88904653 AAATCACGTA
* ** * * **
88904663 CCTTCGGGATTTAA-CCGGATATAGCTC-CTCGTTCAAATGCCTTCGGGACATAGCCCGGTTTTA
1 CCTTCGGGACTTAACCCGGATATAG-TCACTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTA
* *
88904726 GTAACTCACAC-AATG
64 ATAACTCGCACAAATG
* * * * *
88904741 CCTTCGGGACATAACCCGGATTTA-ACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTA
1 CCTTCGGGACTTAACCCGGATATAGTC-ACTCGCAC-AAAGCCTTCGGGACTTAACCCGGAATTA
*
88904805 ATAACTCGCACGAATG
64 ATAACTCGCACAAATG
* *
88904821 CCTTCGGGACTTAACCCGGATTTAGT-ATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATTA
1 CCTTCGGGACTTAACCCGGATATAGTCA-CTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTA
* *
88904885 GTATCTCGCACAAATG
64 ATAACTCGCACAAATG
** * * *
88904901 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTAACCCGGATATAGTCAC-TCGCACAAAGCCTTCGGGACTTAACCCGGA
88904961 CAGCATTCAA
Statistics
Matches: 182, Mismatches: 27, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
77 1 0.01
78 12 0.07
79 50 0.27
80 110 0.60
81 9 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (79 bp):
CCTTCGGGACTTAACCCGGATATAGTCACTCGCACAAAGCCTTCGGGACTTAACCCGGAATTAAT
AACTCGCACAAATG
Found at i:88904969 original size:41 final size:41
Alignment explanation
Indices: 88904892--88904969 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
88904882 TTAGTATCTC
* * *
88904892 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
88904933 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
88904970 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:88908076 original size:221 final size:221
Alignment explanation
Indices: 88907693--88908135 Score: 868
Period size: 221 Copynumber: 2.0 Consensus size: 221
88907683 GACGTTTCAA
88907693 GTCGTTGTACATTTTCGTGCTCCCCGGGTGAATTGACATTCGGCTACAATGGGCTTCGTTCAGGA
1 GTCGTTGTACATTTTCGTGCTCCCCGGGTGAATTGACATTCGGCTACAATGGGCTTCGTTCAGGA
*
88907758 TCATCGGAATGAGTTCCGAATTCCTTGGAACGCACAAACGACTTCTAAACCTCAAACAACCATCA
66 TCATCGGAATGAGTTCCAAATTCCTTGGAACGCACAAACGACTTCTAAACCTCAAACAACCATCA
88907823 TCATCAATCTGAAACTCCGATTCCTTGTTCGGAACACACTCAGCTCGTTTTGCAACCAATTCATC
131 TCATCAATCTGAAACTCCGATTCCTTGTTCGGAACACACTCAGCTCGTTTTGCAACCAATTCATC
88907888 ATCAACTTTCTGAGCTTCACGAATTT
196 ATCAACTTTCTGAGCTTCACGAATTT
*
88907914 GTCGTTGTACATTTTCGTGCTCCCCGGGTGAATTGACATTCGGCTACAATGGGCTTCGTTCAGTA
1 GTCGTTGTACATTTTCGTGCTCCCCGGGTGAATTGACATTCGGCTACAATGGGCTTCGTTCAGGA
88907979 TCATCGGAATGAGTTCCAAATTCCTTGGAACGCACAAACGACTTCTAAACCTCAAACAACCATCA
66 TCATCGGAATGAGTTCCAAATTCCTTGGAACGCACAAACGACTTCTAAACCTCAAACAACCATCA
88908044 TCATCAATCTGAAACTCCGATTCCTTGTTCGGAACACACTCAGCTCGTTTTGCAACCAATTCATC
131 TCATCAATCTGAAACTCCGATTCCTTGTTCGGAACACACTCAGCTCGTTTTGCAACCAATTCATC
88908109 ATCAACTTTCTGAGCTTCACGAATTT
196 ATCAACTTTCTGAGCTTCACGAATTT
88908135 G
1 G
88908136 ATGAGTTTTC
Statistics
Matches: 220, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
221 220 1.00
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (221 bp):
GTCGTTGTACATTTTCGTGCTCCCCGGGTGAATTGACATTCGGCTACAATGGGCTTCGTTCAGGA
TCATCGGAATGAGTTCCAAATTCCTTGGAACGCACAAACGACTTCTAAACCTCAAACAACCATCA
TCATCAATCTGAAACTCCGATTCCTTGTTCGGAACACACTCAGCTCGTTTTGCAACCAATTCATC
ATCAACTTTCTGAGCTTCACGAATTT
Found at i:88909365 original size:245 final size:245
Alignment explanation
Indices: 88908935--88909419 Score: 844
Period size: 245 Copynumber: 2.0 Consensus size: 245
88908925 TTTCAACTCC
* * ** *
88908935 TTTAACTCGGTTGGTGTCATACGATACGAAGTTATCGAAATTGGCGTAGTTCCAGGTACAAGCTC
1 TTTAACTCGGTTAGTGCCATACGATACGAAGCGATCGAAATAGGCGTAGTTCCAGGTACAAGCTC
* *
88909000 AATACCAAACTCTACCTCCCGAACAGGTGGTAAACCCGGTAATTCTTCAGGAAAAACATCCGGGT
66 AATACCAAACTCTACCTCCCGAACAGGTGGCAAACCCGGTAACTCTTCAGGAAAAACATCCGGGT
* *
88909065 ATTCACAAACCACCGGCACAGATTCGGGTTTCTTTTCTAATTCTTTGTCATCAAGTACATACGCA
131 ATTCACAAACCACCGGCACAGATTCGGGTTTCTTTTCTAACTCCTTGTCATCAAGTACATACGCA
*
88909130 AGGTATGCTTCGCACCCTTTTCTTACATATTTCTGGGCCAACATTGCTCT
196 AGGTATGCTTCGCACCCTTTCCTTACATATTTCTGGGCCAACATTGCTCT
*
88909180 TTTAACTCGGTTAGTGCCATACGATACGGAGCGATCGAAATAGGCGTAGTTCCAGGTACAAGCTC
1 TTTAACTCGGTTAGTGCCATACGATACGAAGCGATCGAAATAGGCGTAGTTCCAGGTACAAGCTC
88909245 AATACCAAACTCTACCTCCCGAACAGGTGGCAAACCCGGTAACTCTTCAGGAAAAACATCCGGGT
66 AATACCAAACTCTACCTCCCGAACAGGTGGCAAACCCGGTAACTCTTCAGGAAAAACATCCGGGT
* * *
88909310 ATTCACAGACCACCGGCACCGATTCGGGTTTCTTTTCTAACTCCTTGTCATCAAGTACATACGCG
131 ATTCACAAACCACCGGCACAGATTCGGGTTTCTTTTCTAACTCCTTGTCATCAAGTACATACGCA
88909375 AGGTATGCTTCGCACCCTTTCCTTACATATTTCTGGGCCAACATT
196 AGGTATGCTTCGCACCCTTTCCTTACATATTTCTGGGCCAACATT
88909420 ACTGATATTA
Statistics
Matches: 226, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
245 226 1.00
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (245 bp):
TTTAACTCGGTTAGTGCCATACGATACGAAGCGATCGAAATAGGCGTAGTTCCAGGTACAAGCTC
AATACCAAACTCTACCTCCCGAACAGGTGGCAAACCCGGTAACTCTTCAGGAAAAACATCCGGGT
ATTCACAAACCACCGGCACAGATTCGGGTTTCTTTTCTAACTCCTTGTCATCAAGTACATACGCA
AGGTATGCTTCGCACCCTTTCCTTACATATTTCTGGGCCAACATTGCTCT
Found at i:88915690 original size:82 final size:82
Alignment explanation
Indices: 88915553--88915716 Score: 265
Period size: 82 Copynumber: 2.0 Consensus size: 82
88915543 AGTCAAAGTC
88915553 TCCCATGTTACAGGGATCGACTACACTGACCTTTGCGCATTACGACCTGGATATCTCCCTGCACA
1 TCCCATGTTACAGGGATCGACTACACTGACCTTTGCGCATTACGACCTGGATATCTCCCTGCACA
*
88915618 AAGCTTCAATACTGATG
66 AAGCTCCAATACTGATG
* * * *
88915635 TCCCATGTTACAGGGATCGACTACCCTGACCTTTGCGCATTACGACTTGGATATCTCCTTGTACA
1 TCCCATGTTACAGGGATCGACTACACTGACCTTTGCGCATTACGACCTGGATATCTCCCTGCACA
**
88915700 GGGCTCCAATACTGATG
66 AAGCTCCAATACTGATG
88915717 CCGTTTATTT
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
82 75 1.00
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (82 bp):
TCCCATGTTACAGGGATCGACTACACTGACCTTTGCGCATTACGACCTGGATATCTCCCTGCACA
AAGCTCCAATACTGATG
Found at i:88916781 original size:40 final size:40
Alignment explanation
Indices: 88916737--88916998 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
88916727 GCTCCTCGTT
* *
88916737 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
88916777 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
88916817 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
88916856 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
88916895 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
88916934 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
88916975 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
88916999 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:88921537 original size:34 final size:34
Alignment explanation
Indices: 88921481--88921563 Score: 89
Period size: 34 Copynumber: 2.4 Consensus size: 34
88921471 GTCAATCATT
*
88921481 CAGTAGATAG-ATGCAATTTGGGCCTGAGCAAATTA
1 CAGTA-ATAGTAT-CAATGTGGGCCTGAGCAAATTA
* **
88921516 CAGT-ATCAGTATCAATGTGGGCCTTAGCCCATTA
1 CAGTAAT-AGTATCAATGTGGGCCTGAGCAAATTA
88921550 CAGTAATAGTATCA
1 CAGTAATAGTATCA
88921564 GTGCAGTAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
33 2 0.05
34 31 0.76
35 8 0.20
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.28
Consensus pattern (34 bp):
CAGTAATAGTATCAATGTGGGCCTGAGCAAATTA
Found at i:88923744 original size:19 final size:19
Alignment explanation
Indices: 88923711--88923749 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
88923701 CCTACACAAC
*
88923711 AACATATAACAACAATCAA
1 AACATATAACAACAACCAA
88923730 AACATAT-ACATACAACCAA
1 AACATATAACA-ACAACCAA
88923749 A
1 A
88923750 TCAGCCATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 3 0.17
19 15 0.83
ACGTcount: A:0.62, C:0.23, G:0.00, T:0.15
Consensus pattern (19 bp):
AACATATAACAACAACCAA
Found at i:88924561 original size:42 final size:42
Alignment explanation
Indices: 88924400--88924553 Score: 193
Period size: 42 Copynumber: 3.6 Consensus size: 42
88924390 CATCGTACCA
** *
88924400 ATGCCATATCGTAGACATGGTCTTACATGTAA-TCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACATG-AAGTCTCATATCG
* * *
88924442 ATGCCAATAGCCCAGCTATGGTCTTACATAAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACATGAAGTCTCATATCG
* * *
88924485 ATGCCATATCCCAGATATAGTCTTGCATGAAGTCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACATGAAGTCTCATATCG
*
88924527 ATGCCATATCCCATATATGGTCTTACA
1 ATGCCATATCCCAGATATGGTCTTACA
88924554 CGTAGTCTTA
Statistics
Matches: 95, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
42 62 0.65
43 33 0.35
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGAAGTCTCATATCG
Found at i:88927254 original size:48 final size:48
Alignment explanation
Indices: 88927168--88927392 Score: 333
Period size: 48 Copynumber: 4.6 Consensus size: 48
88927158 TAAGGTCTCA
* * *
88927168 TGTAAGACCATGTTTGGGACATGGCAGCGGTGTTGATATGTGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAG
* * * *
88927216 TGTGAGACCATGTCTGGGACATGGCATCGGCGTGGATATATATGAGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTG--ATATGTGAGCCAG
* *
88927266 TGTAAGACCATGTTTGGGACATGGCATTGGCGTTGATATGTGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAG
**
88927314 TGTAAGACCATGTCTGGGACATGGCATCAACGTTGATATGTGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAG
88927362 TGTAAGACCATGTCTGGGACATGGCATCGGC
1 TGTAAGACCATGTCTGGGACATGGCATCGGC
88927393 ACTGACATGA
Statistics
Matches: 156, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
48 114 0.73
50 42 0.27
ACGTcount: A:0.24, C:0.17, G:0.32, T:0.26
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAG
Found at i:88927336 original size:98 final size:96
Alignment explanation
Indices: 88927167--88927392 Score: 344
Period size: 98 Copynumber: 2.3 Consensus size: 96
88927157 ATAAGGTCTC
* * *
88927167 ATGTAAGACCATGTTTGGGACATGGCAGCGGTGTTGATATGTGAGCCAGTGTGAGACCATGTCTG
1 ATGTAAGACCATGTTTGGGACATGGCATCGGCGTTGATATGTGAGCCAGTGTAAGACCATGTCTG
**
88927232 GGACATGGCATCGGCGTGGATATATATGAGCCA
66 GGACATGGCATCAACGTGG--ATATATGAGCCA
*
88927265 ATGTAAGACCATGTTTGGGACATGGCATTGGCGTTGATATGTGAGCCAGTGTAAGACCATGTCTG
1 ATGTAAGACCATGTTTGGGACATGGCATCGGCGTTGATATGTGAGCCAGTGTAAGACCATGTCTG
* *
88927330 GGACATGGCATCAACGTTGATATGTGAGCCA
66 GGACATGGCATCAACGTGGATATATGAGCCA
* *
88927361 GTGTAAGACCATGTCTGGGACATGGCATCGGC
1 ATGTAAGACCATGTTTGGGACATGGCATCGGC
88927393 ACTGACATGA
Statistics
Matches: 117, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
96 40 0.34
98 77 0.66
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.26
Consensus pattern (96 bp):
ATGTAAGACCATGTTTGGGACATGGCATCGGCGTTGATATGTGAGCCAGTGTAAGACCATGTCTG
GGACATGGCATCAACGTGGATATATGAGCCA
Found at i:88930005 original size:37 final size:35
Alignment explanation
Indices: 88929963--88930061 Score: 137
Period size: 37 Copynumber: 2.8 Consensus size: 35
88929953 ATGCCACTCA
88929963 TCTTTCAATTAACATCCTGCCACAACACTGAAACTT
1 TCTTTCAATTAACATCCTGCCACAACACTGAAAC-T
* * *
88929999 CTCTTTCAATTAAAATCCTGCCAC-ACGCTGATACT
1 -TCTTTCAATTAACATCCTGCCACAACACTGAAACT
*
88930034 TCATTCAATTAACATCCTGCCACAACAC
1 TCTTTCAATTAACATCCTGCCACAACAC
88930062 CCATACTTCA
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
34 21 0.38
35 4 0.07
36 8 0.15
37 22 0.40
ACGTcount: A:0.32, C:0.32, G:0.06, T:0.29
Consensus pattern (35 bp):
TCTTTCAATTAACATCCTGCCACAACACTGAAACT
Found at i:88930051 original size:34 final size:36
Alignment explanation
Indices: 88929966--88930057 Score: 125
Period size: 34 Copynumber: 2.6 Consensus size: 36
88929956 CCACTCATCT
*
88929966 TTCAATTAACATCCTGCCACAACACTGAAACTTCTCT
1 TTCAATTAACATCCTGCCAC-ACACTGAAACTTCTCA
* * *
88930003 TTCAATTAAAATCCTGCCACACGCTGATAC-T-TCA
1 TTCAATTAACATCCTGCCACACACTGAAACTTCTCA
88930037 TTCAATTAACATCCTGCCACA
1 TTCAATTAACATCCTGCCACA
88930058 ACACCCATAC
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
34 22 0.44
35 1 0.02
36 8 0.16
37 19 0.38
ACGTcount: A:0.33, C:0.32, G:0.07, T:0.29
Consensus pattern (36 bp):
TTCAATTAACATCCTGCCACACACTGAAACTTCTCA
Found at i:88951352 original size:3 final size:3
Alignment explanation
Indices: 88951344--88951368 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
88951334 GTATGTATTG
88951344 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
88951369 TTAGAACATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Done.