Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 29 of 313
Found at i:9901637 original size:45 final size:45
Alignment explanation
Indices: 9901541--9901706 Score: 142
Period size: 45 Copynumber: 3.7 Consensus size: 45
9901531 ACTGGGCAAA
9901541 TTAGCGGCG-TTTTTTAAAAAAAGCGCCGCTAAAAGAACTGCACT
1 TTAGCGGCGTTTTTTTAAAAAAAGCGCCGCTAAAAGAACTGCACT
* * * ** **
9901585 TTCGCGGCGTTTTTTTTACAAAAGCGCCGCTAAAAGTCCTGGTCT
1 TTAGCGGCGTTTTTTTAAAAAAAGCGCCGCTAAAAGAACTGCACT
* * * * * *
9901630 TTAGCGGCG-TATTTT-AAGAAAGCACCGCT-AAAGACCAGGACTT
1 TTAGCGGCGTTTTTTTAAAAAAAGCGCCGCTAAAAGAACTGCAC-T
* * *
9901673 TTAGCGGCACTTTTTTCAAAAAAAACGCCGCTAA
1 TTAGCGGC-GTTTTTTTAAAAAAAGCGCCGCTAA
9901707 TTTTACCGGT
Statistics
Matches: 95, Mismatches: 21, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
42 9 0.09
43 20 0.21
44 13 0.14
45 41 0.43
46 11 0.12
47 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.27
Consensus pattern (45 bp):
TTAGCGGCGTTTTTTTAAAAAAAGCGCCGCTAAAAGAACTGCACT
Found at i:9903603 original size:16 final size:16
Alignment explanation
Indices: 9903557--9903603 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 16
9903547 AAGTCTATAT
9903557 TAATATTATCTATTTAAA
1 TAATATTA-CT-TTTAAA
*
9903575 TTATATATA-TTTTAAA
1 TAATAT-TACTTTTAAA
9903591 TAATATTACTTTT
1 TAATATTACTTTT
9903604 GTTGTTATCT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
15 2 0.08
16 15 0.60
17 1 0.04
18 5 0.20
19 2 0.08
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.55
Consensus pattern (16 bp):
TAATATTACTTTTAAA
Found at i:9907825 original size:19 final size:20
Alignment explanation
Indices: 9907802--9907854 Score: 81
Period size: 19 Copynumber: 2.6 Consensus size: 20
9907792 ACAACAATTA
9907802 AAAAATTCAAAATAATTT-T
1 AAAAATTCAAAATAATTTAT
*
9907821 TAAAATTCAAAATAATTTAT
1 AAAAATTCAAAATAATTTAT
9907841 AAAAATTCCAAAAT
1 AAAAATT-CAAAAT
9907855 TTATATTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 17 0.57
20 7 0.23
21 6 0.20
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.34
Consensus pattern (20 bp):
AAAAATTCAAAATAATTTAT
Found at i:9909496 original size:22 final size:22
Alignment explanation
Indices: 9909468--9909509 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
9909458 GTGTCGTCGA
9909468 GATGTTGACTCT-TTCTCATCAT
1 GATGTTGACTCTATT-TCATCAT
9909490 GATGTTGACTCTATTTCATC
1 GATGTTGACTCTATTTCATC
9909510 CAAAATGCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.19, C:0.21, G:0.14, T:0.45
Consensus pattern (22 bp):
GATGTTGACTCTATTTCATCAT
Found at i:9914011 original size:28 final size:28
Alignment explanation
Indices: 9913960--9914014 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 28
9913950 ACAAGGGTTT
9913960 TCACACGGCCTGACACACGCCCGTGTCCC
1 TCACACGGCCTGA-ACACGCCCGTGTCCC
9913989 TCACACGGCCATG-ACACGCCCGTGTC
1 TCACACGGCC-TGAACACGCCCGTGTC
9914015 TTAGCCCGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
28 13 0.52
29 10 0.40
30 2 0.08
ACGTcount: A:0.18, C:0.45, G:0.22, T:0.15
Consensus pattern (28 bp):
TCACACGGCCTGAACACGCCCGTGTCCC
Found at i:9915232 original size:49 final size:48
Alignment explanation
Indices: 9915168--9915528 Score: 228
Period size: 49 Copynumber: 7.6 Consensus size: 48
9915158 ACATCAAAGT
* *
9915168 CGATGTCATGTCCCAGACAGGTCTTACACTAACTTTCATATATCGAGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTAACTCTCATATATC-AGGC
* * ** *
9915217 CGATGCCGTATCCCAGACAGGTCTTACACTGGCTCTCATCTATCAGTGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTAACTCTCATATATCAG-GC
* * *
9915266 CGATGCCATGTCCCAGACAGGTCTTACACTGACACTC--A-A-CAAGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTAACTCTCATATATCAGGC
* * * * *
9915310 TGACGCCATGTCCCAGACAGGTCTTACACTAGCT-TGTATATCTCGAGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTAACTCT-CATATATC-AGGC
* * * * * * *
9915359 TGATG-CATGTCCCAGACATGTCTTACACTAGCTCTC--GTCTCAATGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTAACTCTCATATATC-AGGC
* ** * * * *
9915405 CGATG-CATGTCCCAGACATGTCTTACACTGGCTGGT-ATATCTCAATGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTAACT-CTCATATATC-AGGC
* * * **
9915453 TGATG-CATGTCCCAAACATGTCTTACACTGGCTCTCATA-AT-ATGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTAACTCTCATATATCA-GGC
* *
9915499 CGATG-CATGTCCCAAACATGTCTTACACTA
1 CGATGCCATGTCCCAGACAGGTCTTACACTA
9915529 GCACACATAT
Statistics
Matches: 259, Mismatches: 40, Indels: 29
0.79 0.12 0.09
Matches are distributed among these distances:
43 1 0.00
44 31 0.12
45 3 0.01
46 68 0.26
47 3 0.01
48 73 0.28
49 80 0.31
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTAACTCTCATATATCAGGC
Found at i:9915383 original size:48 final size:48
Alignment explanation
Indices: 9915316--9915530 Score: 217
Period size: 46 Copynumber: 4.6 Consensus size: 48
9915306 AAGCTGACGC
* *
9915316 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCTGATG
* ** *
9915364 CATGTCCCAGACATGTCTTACACTAGC-TCT-CGTCTCAATG-TCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCT-GATG
* * * *
9915410 CATGTCCCAGACATGTCTTACACTGGCTGGTATATCTCAATGTTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCTGATG
* * * * * *
9915458 CATGTCCCAAACATGTCTTACACTGGCTCT-CATA-AT-ATGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-TGTATATCTCAAGGCTGATG
*
9915504 CATGTCCCAAACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
9915531 ACACATATCA
Statistics
Matches: 142, Mismatches: 20, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
45 1 0.01
46 68 0.48
47 4 0.03
48 68 0.48
49 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCTGATG
Found at i:9915424 original size:46 final size:47
Alignment explanation
Indices: 9915126--9915530 Score: 228
Period size: 48 Copynumber: 8.6 Consensus size: 47
9915116 ATGCCGACGC
* * *
9915126 CATGTCCCAAACATGGTCTTACACT-G-GCTAGCA-CATCAAAGTCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTCTA-CATC-TCAATGTCGATG
* * * * * * * *
9915173 TCATGTCCCAGACAGGTCTTACACTAACTTTCATATATCGAGGCCGATG
1 -CATGTCCCAGACATGTCTTACACTAGCTCT-ACATCTCAATGTCGATG
* * * * * *
9915222 CCGTATCCCAGACAGGTCTTACACTGGCTCT-CATCTATCAGTGCCGATG
1 -CATGTCCCAGACATGTCTTACACTAGCTCTACATC--TCAATGTCGATG
* * * *
9915271 CCATGTCCCAGACAGGTCTTACACT-G-AC-AC-TCAACAA-G-CTGACG
1 -CATGTCCCAGACATGTCTTACACTAGCTCTACATC-TCAATGTC-GATG
* * * * *
9915315 CCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGA-GGCTGATG
1 -CATGTCCCAGACATGTCTTACACTAGC-TCTACATCTCAATGTC-GATG
*
9915364 CATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTCAATGTCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTACATCTCAATGTCGATG
* * * *
9915410 CATGTCCCAGACATGTCTTACACTGGCTGGTATATCTCAATGTTGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-CTACATCTCAATGTCGATG
* * * *
9915458 CATGTCCCAAACATGTCTTACACTGGCTCT-CA--TAATATGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTACATCTCA-AT-GTCGATG
*
9915504 CATGTCCCAAACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
9915531 ACACATATCA
Statistics
Matches: 287, Mismatches: 51, Indels: 40
0.76 0.13 0.11
Matches are distributed among these distances:
43 1 0.00
44 31 0.11
45 6 0.02
46 70 0.24
47 20 0.07
48 83 0.29
49 75 0.26
50 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTACATCTCAATGTCGATG
Found at i:9915433 original size:94 final size:94
Alignment explanation
Indices: 9915316--9915530 Score: 290
Period size: 94 Copynumber: 2.3 Consensus size: 94
9915306 AAGCTGACGC
* * * *
9915316 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCTGATGCATGTCCCAGACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCTGGTATATCTCAAGGCTGATGCATGTCCCAAACATGTC
* * *
9915381 TTACACTAGCTCTCGT-CTCAAT-GTCGATG
66 TTACACTAGCTCTCATAAT--ATGGCCGATG
* * *
9915410 CATGTCCCAGACATGTCTTACACTGGCTGGTATATCTCAATGTTGATGCATGTCCCAAACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCTGGTATATCTCAAGGCTGATGCATGTCCCAAACATGTC
*
9915475 TTACACTGGCTCTCATAATATGGCCGATG
66 TTACACTAGCTCTCATAATATGGCCGATG
*
9915504 CATGTCCCAAACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
9915531 ACACATATCA
Statistics
Matches: 106, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
93 2 0.02
94 103 0.97
95 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (94 bp):
CATGTCCCAGACATGTCTTACACTAGCTGGTATATCTCAAGGCTGATGCATGTCCCAAACATGTC
TTACACTAGCTCTCATAATATGGCCGATG
Found at i:9915539 original size:94 final size:93
Alignment explanation
Indices: 9915116--9915530 Score: 288
Period size: 94 Copynumber: 4.4 Consensus size: 93
9915106 ATGGGATAAG
* * * * * * * *
9915116 ATGCCGACGCCATGTCCCAAACATGGTCTTACACTGGCTAGCACATC-AAAGTC-GATGTCATGT
1 ATGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCGTATATCTCAAGGCTGATG-CATGT
* * * *
9915179 CCCAGACAGGTCTTACACTAACTTTCATATA
63 CCCAAACATGTCTTACACTAGCTCTCATATA
* * * * * * * *
9915210 TCGAGGCCGATGCCGTATCCCAGACAGGTCTTACACTGGCTC-TCATCTATC-AGTGCCGATGCC
1 ---ATGCCGATG-CATGTCCCAGACATGTCTTACACTAGCTCGT-ATATCTCAAG-GCTGATG-C
* * * *
9915273 ATGTCCCAGACAGGTCTTACACT-GACACTCA-ACA
59 ATGTCCCAAACATGTCTTACACTAG-CTCTCATATA
* * * * *
9915307 A-GCTGACGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCTGATGCATGTCC
1 ATGCCGATG-CATGTCCCAGACATGTCTTACACTAGCTCGTATATCTCAAGGCTGATGCATGTCC
* * *
9915371 CAGACATGTCTTACACTAGCTCTCGTCTCA
65 CAAACATGTCTTACACTAGCTCTCATAT-A
* * * * *
9915401 ATGTCGATGCATGTCCCAGACATGTCTTACACTGGCTGGTATATCTCAATGTTGATGCATGTCCC
1 ATGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCGTATATCTCAAGGCTGATGCATGTCCC
*
9915466 AAACATGTCTTACACTGGCTCTCATA-A
66 AAACATGTCTTACACTAGCTCTCATATA
*
9915493 TATGGCCGATGCATGTCCCAAACATGTCTTACACTAGC
1 -AT-GCCGATGCATGTCCCAGACATGTCTTACACTAGC
9915531 ACACATATCA
Statistics
Matches: 257, Mismatches: 48, Indels: 29
0.77 0.14 0.09
Matches are distributed among these distances:
92 28 0.11
93 45 0.18
94 109 0.42
95 4 0.02
96 18 0.07
97 21 0.08
98 32 0.12
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (93 bp):
ATGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCGTATATCTCAAGGCTGATGCATGTCCC
AAACATGTCTTACACTAGCTCTCATATA
Found at i:9921976 original size:14 final size:14
Alignment explanation
Indices: 9921957--9921985 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
9921947 TAATGTATTT
9921957 AATTTATATTACAA
1 AATTTATATTACAA
9921971 AATTTATATTACAA
1 AATTTATATTACAA
9921985 A
1 A
9921986 GTTTGTTCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (14 bp):
AATTTATATTACAA
Found at i:9922038 original size:14 final size:14
Alignment explanation
Indices: 9922019--9922047 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
9922009 TAATGTATTT
9922019 AATTTATATTACAA
1 AATTTATATTACAA
9922033 AATTTATATTACAA
1 AATTTATATTACAA
9922047 A
1 A
9922048 GTTTGTTCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (14 bp):
AATTTATATTACAA
Found at i:9922100 original size:14 final size:14
Alignment explanation
Indices: 9922081--9922109 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
9922071 TAATGTATTT
9922081 AATTTATATTACAA
1 AATTTATATTACAA
9922095 AATTTATATTACAA
1 AATTTATATTACAA
9922109 A
1 A
9922110 GTTTGTTCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (14 bp):
AATTTATATTACAA
Found at i:9922146 original size:62 final size:62
Alignment explanation
Indices: 9921909--9922132 Score: 448
Period size: 62 Copynumber: 3.6 Consensus size: 62
9921899 CAATGTACCT
9921909 AATTTATATTACAAAGTTTGTTCCAAGTTTTAATGTTGTAATGTATTTAATTTATATTACAA
1 AATTTATATTACAAAGTTTGTTCCAAGTTTTAATGTTGTAATGTATTTAATTTATATTACAA
9921971 AATTTATATTACAAAGTTTGTTCCAAGTTTTAATGTTGTAATGTATTTAATTTATATTACAA
1 AATTTATATTACAAAGTTTGTTCCAAGTTTTAATGTTGTAATGTATTTAATTTATATTACAA
9922033 AATTTATATTACAAAGTTTGTTCCAAGTTTTAATGTTGTAATGTATTTAATTTATATTACAA
1 AATTTATATTACAAAGTTTGTTCCAAGTTTTAATGTTGTAATGTATTTAATTTATATTACAA
9922095 AATTTATATTACAAAGTTTGTTCCAAGTTTTAATGTTG
1 AATTTATATTACAAAGTTTGTTCCAAGTTTTAATGTTG
9922133 CAATTAATCT
Statistics
Matches: 162, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 162 1.00
ACGTcount: A:0.35, C:0.07, G:0.10, T:0.48
Consensus pattern (62 bp):
AATTTATATTACAAAGTTTGTTCCAAGTTTTAATGTTGTAATGTATTTAATTTATATTACAA
Found at i:9925374 original size:49 final size:49
Alignment explanation
Indices: 9925281--9925374 Score: 111
Period size: 49 Copynumber: 1.9 Consensus size: 49
9925271 TCTCTATTTA
** *
9925281 TTTTTTTTCCTTCTTTTTCTCCTTCCCTTTCTCTATTCTGCTTCTCTTT
1 TTTTTTTTCCTTCTTTTTCTCCTTCCCCCTCTCTATTCTCCTTCTCTTT
* *
9925330 TTTTTTTTCTTTCTTTTTC-CCTTCCTGCCCTCTC-CTTCTCCTTCT
1 TTTTTTTTCCTTCTTTTTCTCCTTCC--CCCTCTCTATTCTCCTTCT
9925375 TCTTCTTCTT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 6 0.16
49 27 0.71
50 5 0.13
ACGTcount: A:0.01, C:0.34, G:0.02, T:0.63
Consensus pattern (49 bp):
TTTTTTTTCCTTCTTTTTCTCCTTCCCCCTCTCTATTCTCCTTCTCTTT
Found at i:9929416 original size:15 final size:15
Alignment explanation
Indices: 9929396--9929428 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
9929386 CATTCAATCA
*
9929396 AAATTTTTAATTTTT
1 AAATTTTAAATTTTT
9929411 AAATTTTAAA-TTTT
1 AAATTTTAAATTTTT
9929425 AAAT
1 AAAT
9929429 GTTGAATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
AAATTTTAAATTTTT
Found at i:9934151 original size:23 final size:23
Alignment explanation
Indices: 9934125--9934168 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
9934115 CGCAAAAATA
* *
9934125 ATTAAATGTTAAATTTCATGTCT
1 ATTAAATGTGAAATTACATGTCT
*
9934148 ATTATATGTGAAATTACATGT
1 ATTAAATGTGAAATTACATGT
9934169 GTGAAATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.36, C:0.07, G:0.11, T:0.45
Consensus pattern (23 bp):
ATTAAATGTGAAATTACATGTCT
Found at i:9939890 original size:23 final size:23
Alignment explanation
Indices: 9939860--9939905 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
9939850 TATGATAATG
**
9939860 TTTAAAAATTTTAAAGAAAAATA
1 TTTAAAAAAATTAAAGAAAAATA
*
9939883 TTTAAAAAAATTAAATAAAAATA
1 TTTAAAAAAATTAAAGAAAAATA
9939906 AACAACACTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (23 bp):
TTTAAAAAAATTAAAGAAAAATA
Found at i:9945483 original size:22 final size:21
Alignment explanation
Indices: 9945456--9945496 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
9945446 AAAGAAAGAA
* *
9945456 AACGTGGAAGTTGAGAGAAAAG
1 AACGTGAAAATTGAG-GAAAAG
9945478 AACGTGAAAATTGAGGAAA
1 AACGTGAAAATTGAGGAAA
9945497 GGAAATTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.49, C:0.05, G:0.32, T:0.15
Consensus pattern (21 bp):
AACGTGAAAATTGAGGAAAAG
Found at i:9951665 original size:79 final size:81
Alignment explanation
Indices: 9951525--9951709 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
9951515 TTGAATGATG
* *
9951525 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
9951589 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * * **
9951604 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATTCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
9951666 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
9951684 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
9951710 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 33 0.37
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:9951723 original size:40 final size:40
Alignment explanation
Indices: 9951526--9951709 Score: 198
Period size: 40 Copynumber: 4.6 Consensus size: 40
9951516 TGAATGATGT
* * * *
9951526 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
9951566 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
9951606 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* * *
9951644 TTCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
9951685 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
9951710 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:9951731 original size:79 final size:79
Alignment explanation
Indices: 9951578--9951742 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
9951568 GGACTAAGAT
* * **
9951578 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
* *
9951643 ATTCGGGTTAAGTC
66 ATTCCGGTTAAATC
* *
9951657 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
9951720 TATA-TCCGGTTAAATT
63 TAAATTCCGGTTAAATC
9951736 CCGAAGG
1 CCGAAGG
9951743 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.67
80 22 0.30
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATTCCGGTTAAATC
Found at i:9955644 original size:26 final size:26
Alignment explanation
Indices: 9955615--9955679 Score: 76
Period size: 26 Copynumber: 2.5 Consensus size: 26
9955605 GCTCAATAAG
*
9955615 CTTCCTGTTTAAAGGCTCTTCATGAA
1 CTTCCTGTTTAAAAGCTCTTCATGAA
* * **
9955641 CTTCCTGGTTAAAAGTTCTTTGTGAA
1 CTTCCTGTTTAAAAGCTCTTCATGAA
*
9955667 CTTCCTATTTAAA
1 CTTCCTGTTTAAA
9955680 CTCTTATGAG
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.25, C:0.20, G:0.14, T:0.42
Consensus pattern (26 bp):
CTTCCTGTTTAAAAGCTCTTCATGAA
Found at i:9969573 original size:20 final size:20
Alignment explanation
Indices: 9969531--9969573 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
9969521 ACTTACAAAG
* *
9969531 TAAAAGAAAATCAAAGAGGA
1 TAAAAGAAAATAAAAGAGAA
* *
9969551 TAAAATAAAATAAAATAGAA
1 TAAAAGAAAATAAAAGAGAA
9969571 TAA
1 TAA
9969574 TAACCAAAAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.70, C:0.02, G:0.12, T:0.16
Consensus pattern (20 bp):
TAAAAGAAAATAAAAGAGAA
Found at i:9971703 original size:90 final size:90
Alignment explanation
Indices: 9971598--9972443 Score: 1692
Period size: 90 Copynumber: 9.4 Consensus size: 90
9971588 TATCTGGTAC
9971598 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTGCCTGCACTTAGTACTAC
1 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTGCCTGCACTTAGTACTAC
9971663 ACACGTGATCATAGTTTTCGGGAAT
66 ACACGTGATCATAGTTTTCGGGAAT
9971688 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTGCCTGCACTTAGTACTAC
1 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTGCCTGCACTTAGTACTAC
9971753 ACACGTGATCATAGTTTTCGGGAAT
66 ACACGTGATCATAGTTTTCGGGAAT
9971778 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTGCCTGCACTTAGTACTAC
1 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTGCCTGCACTTAGTACTAC
9971843 ACACGTGATCATAGTTTTCGGGAAT
66 ACACGTGATCATAGTTTTCGGGAAT
9971868 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTGCCTGCACTTAGTACTAC
1 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTGCCTGCACTTAGTACTAC
9971933 ACACGTGATCATAGTTTTCGGGAAT
66 ACACGTGATCATAGTTTTCGGGAAT
9971958 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTGCCTGCACTTAGTACTAC
1 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTGCCTGCACTTAGTACTAC
9972023 ACACGTGATCATAGTTTTCGGGAAT
66 ACACGTGATCATAGTTTTCGGGAAT
9972048 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTGCCTGCACTTAGTACTAC
1 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTGCCTGCACTTAGTACTAC
9972113 ACACGTGATCATAGTTTTCGGGAAT
66 ACACGTGATCATAGTTTTCGGGAAT
9972138 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTGCCTGCACTTAGTACTAC
1 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTGCCTGCACTTAGTACTAC
9972203 ACACGTGATCATAGTTTTCGGGAAT
66 ACACGTGATCATAGTTTTCGGGAAT
9972228 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTGCCTGCACTTAGTACTAC
1 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTGCCTGCACTTAGTACTAC
9972293 ACACGTGATCATAGTTTTCGGGAAT
66 ACACGTGATCATAGTTTTCGGGAAT
9972318 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTGCCTGCACTTAGTACTAC
1 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTGCCTGCACTTAGTACTAC
9972383 ACACGTGATCATAGTTTTCGGGAAT
66 ACACGTGATCATAGTTTTCGGGAAT
9972408 GCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 GCATAGTAGCCTGCACTTAGTACTACACATGCGACC
9972444 TCACAATAGA
Statistics
Matches: 756, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
90 756 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (90 bp):
GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTGCCTGCACTTAGTACTAC
ACACGTGATCATAGTTTTCGGGAAT
Found at i:9974631 original size:15 final size:15
Alignment explanation
Indices: 9974575--9974639 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
9974565 TAAAGATAAC
*
9974575 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
9974589 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
9974604 GAA-AAACCCAGAATA
1 -AAGAAATCCAGAATA
9974619 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
9974634 AAGAAA
1 AAGAAA
9974640 CCCAAGATAC
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 11 0.26
15 29 0.67
16 3 0.07
ACGTcount: A:0.63, C:0.14, G:0.14, T:0.09
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:9974641 original size:30 final size:31
Alignment explanation
Indices: 9974575--9974643 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
9974565 TAAAGATAAC
*
9974575 AAGAAAACC-GAATAAAGAAATCCAAGATAG
1 AAGAAACCCAGAATAAAGAAATCCAAGATAG
9974605 AA-AAACCCAGAATAAAGAAATCC-AGAATA-
1 AAGAAACCCAGAATAAAGAAATCCAAG-ATAG
9974634 AAGAAACCCA
1 AAGAAACCCA
9974644 AGATACGATA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 9 0.26
30 26 0.74
ACGTcount: A:0.61, C:0.17, G:0.13, T:0.09
Consensus pattern (31 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATAG
Found at i:9977941 original size:150 final size:150
Alignment explanation
Indices: 9977665--9978605 Score: 1873
Period size: 150 Copynumber: 6.3 Consensus size: 150
9977655 GAAGCTATCT
*
9977665 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCC
9977730 TGCACTTAGTACTACACACGTGACCTCACCATCTAATACACATAGTAGCATGCACTTAGTACTAC
66 TGCACTTAGTACTACACACGTGACCTCACCATCTAATACACATAGTAGCATGCACTTAGTACTAC
9977795 ACACGTGATCACAGTTTTCG
131 ACACGTGATCACAGTTTTCG
9977815 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCC
9977880 TGCACTTAGTACTACACACGTGACCTCACCATCTAATACACATAGTAGCATGCACTTAGTACTAC
66 TGCACTTAGTACTACACACGTGACCTCACCATCTAATACACATAGTAGCATGCACTTAGTACTAC
9977945 ACACGTGATCACAGTTTTCG
131 ACACGTGATCACAGTTTTCG
9977965 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCC
9978030 TGCACTTAGTACTACACACGTGACCTCACCATCTAATACACATAGTAGCATGCACTTAGTACTAC
66 TGCACTTAGTACTACACACGTGACCTCACCATCTAATACACATAGTAGCATGCACTTAGTACTAC
9978095 ACACGTGATCACAGTTTTCG
131 ACACGTGATCACAGTTTTCG
9978115 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCC
9978180 TGCACTTAGTACTACACACGTGACCTCACCATCTAATACACATAGTAGCATGCACTTAGTACTAC
66 TGCACTTAGTACTACACACGTGACCTCACCATCTAATACACATAGTAGCATGCACTTAGTACTAC
9978245 ACACGTGATCACAGTTTTCG
131 ACACGTGATCACAGTTTTCG
9978265 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCC
9978330 TGCACTTAGTACTACACACGTGACCTCACCATCTAATACACATAGTAGCATGCACTTAGTACTAC
66 TGCACTTAGTACTACACACGTGACCTCACCATCTAATACACATAGTAGCATGCACTTAGTACTAC
9978395 ACACGTGATCACAGTTTTCG
131 ACACGTGATCACAGTTTTCG
9978415 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCC
9978480 TGCACTTAGTACTACACACGTGACCTCACCATCTAATACACATAGTAGCATGCACTTAGTACTAC
66 TGCACTTAGTACTACACACGTGACCTCACCATCTAATACACATAGTAGCATGCACTTAGTACTAC
9978545 ACACGTGATCACAGTTTTCG
131 ACACGTGATCACAGTTTTCG
9978565 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
9978606 TCACAATAGA
Statistics
Matches: 790, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
150 790 1.00
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (150 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGTGACCTCACCATCTAATACACATAGTAGCATGCACTTAGTACTAC
ACACGTGATCACAGTTTTCG
Found at i:9981749 original size:21 final size:21
Alignment explanation
Indices: 9981722--9981774 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
9981712 AAATATTTTT
9981722 ATATTAAAATACAATATAAAA
1 ATATTAAAATACAATATAAAA
* * * *
9981743 ATTTTAAAAAATAATATGAAA
1 ATATTAAAATACAATATAAAA
*
9981764 ATAATAAAATA
1 ATATTAAAATA
9981775 TATAAAATAA
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (21 bp):
ATATTAAAATACAATATAAAA
Found at i:9991936 original size:23 final size:22
Alignment explanation
Indices: 9991884--9991958 Score: 91
Period size: 21 Copynumber: 3.5 Consensus size: 22
9991874 CCTGATCAGT
** *
9991884 ATACGACACATAAAGTGCCT-A
1 ATACGACACACGAGGTGCCTGA
*
9991905 AAACGACACACGAGGTGCCTG-
1 ATACGACACACGAGGTGCCTGA
9991926 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACGAGGTGCCTG-A
9991949 ATACGACACA
1 ATACGACACA
9991959 TAAAGTGTCT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
21 36 0.78
23 10 0.22
ACGTcount: A:0.39, C:0.27, G:0.21, T:0.13
Consensus pattern (22 bp):
ATACGACACACGAGGTGCCTGA
Found at i:9991970 original size:23 final size:23
Alignment explanation
Indices: 9991884--9991970 Score: 83
Period size: 21 Copynumber: 4.0 Consensus size: 23
9991874 CCTGATCAGT
*
9991884 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* *
9991906 A-ACGACACACGAGGTGCCTG--
1 ATACGACACACAAAGTGCCTGAA
* *
9991926 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
* *
9991949 ATACGACACATAAAGTGTCTGA
1 ATACGACACACAAAGTGCCTGA
9991971 TCAGTAAAGC
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
20 1 0.02
21 34 0.63
22 1 0.02
23 18 0.33
ACGTcount: A:0.38, C:0.24, G:0.22, T:0.16
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:9995358 original size:12 final size:12
Alignment explanation
Indices: 9995338--9995399 Score: 58
Period size: 12 Copynumber: 5.2 Consensus size: 12
9995328 CTTTACATCT
*
9995338 AAAAGAATTATA
1 AAAAAAATTATA
9995350 AAAAAAATTATA
1 AAAAAAATTATA
*
9995362 TAAAAAAA--ATT
1 -AAAAAAATTATA
*
9995373 AAAATAA-TATA
1 AAAAAAATTATA
9995384 TAAAAAAATTATA
1 -AAAAAAATTATA
9995397 AAA
1 AAA
9995400 TATATAAAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
10 6 0.15
11 4 0.10
12 20 0.49
13 11 0.27
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.26
Consensus pattern (12 bp):
AAAAAAATTATA
Found at i:9995363 original size:14 final size:14
Alignment explanation
Indices: 9995346--9995373 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
9995336 CTAAAAGAAT
9995346 TATAAAAAAAATTA
1 TATAAAAAAAATTA
9995360 TATAAAAAAAATTA
1 TATAAAAAAAATTA
9995374 AAATAATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (14 bp):
TATAAAAAAAATTA
Found at i:9995383 original size:22 final size:21
Alignment explanation
Indices: 9995351--9995410 Score: 86
Period size: 21 Copynumber: 2.8 Consensus size: 21
9995341 AGAATTATAA
9995351 AAAAAATTATATAAAAAAAATT
1 AAAAAA-TATATAAAAAAAATT
9995373 AAAATAATATAT-AAAAAAATT
1 AAAA-AATATATAAAAAAAATT
*
9995394 ATAAAATATATAAAAAA
1 AAAAAATATATAAAAAA
9995411 CCAACCCTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
20 7 0.20
21 17 0.49
22 9 0.26
23 2 0.06
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (21 bp):
AAAAAATATATAAAAAAAATT
Found at i:9999283 original size:4 final size:4
Alignment explanation
Indices: 9999274--9999304 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
9999264 AAGTAATTTA
9999274 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
9999305 ATGAGCAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:10005130 original size:16 final size:16
Alignment explanation
Indices: 10005111--10005143 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
10005101 GATTTTAAAC
*
10005111 ATGATTTATTTTGGAA
1 ATGATTTATTTGGGAA
10005127 ATGATTTATTTGGGAA
1 ATGATTTATTTGGGAA
10005143 A
1 A
10005144 ACGTGTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.45
Consensus pattern (16 bp):
ATGATTTATTTGGGAA
Found at i:10005334 original size:13 final size:15
Alignment explanation
Indices: 10005306--10005358 Score: 63
Period size: 15 Copynumber: 3.4 Consensus size: 15
10005296 TTATAGAATT
10005306 AAAATTATTTTATAA
1 AAAATTATTTTATAA
10005321 AAAATTATTTTA-AA
1 AAAATTATTTTATAA
*
10005335 ACTAATTAATTTTATTAA
1 A-AAATT-ATTTTA-TAA
10005353 AAAATT
1 AAAATT
10005359 TAGAAACCCC
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
14 3 0.09
15 16 0.50
16 6 0.19
17 4 0.12
18 3 0.09
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
AAAATTATTTTATAA
Found at i:10005800 original size:30 final size:30
Alignment explanation
Indices: 10005741--10005800 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
10005731 TATTTTATTA
*
10005741 TTAATTTTGTTATTATTTTAAAGATATTTG
1 TTAATTTTGTTATTATTTTAAAGACATTTG
* *
10005771 TTAATTTTGTTATTATTTTAGAGGCATTTG
1 TTAATTTTGTTATTATTTTAAAGACATTTG
10005801 CTTGCTAAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.27, C:0.02, G:0.13, T:0.58
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGACATTTG
Found at i:10005954 original size:12 final size:12
Alignment explanation
Indices: 10005924--10005956 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
10005914 TATATATTTT
10005924 AAAATT-ATATA
1 AAAATTAATATA
10005935 AAAA-TAATATA
1 AAAATTAATATA
10005946 AAAATTAATAT
1 AAAATTAATAT
10005957 GGGCGGGCTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:10007398 original size:24 final size:24
Alignment explanation
Indices: 10007370--10007419 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
10007360 AAATAAGGAG
* *
10007370 AATGGTTATCTAGATTAGGAGGTT
1 AATGGTTATCTAAATTAGAAGGTT
10007394 AATGGTTATCTAAATTAGAAGGTT
1 AATGGTTATCTAAATTAGAAGGTT
10007418 AA
1 AA
10007420 CAATGATAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.36, C:0.04, G:0.24, T:0.36
Consensus pattern (24 bp):
AATGGTTATCTAAATTAGAAGGTT
Found at i:10008069 original size:28 final size:29
Alignment explanation
Indices: 10008026--10008097 Score: 110
Period size: 28 Copynumber: 2.5 Consensus size: 29
10008016 TGGTGGACAA
*
10008026 TGCAAGCCAAAGTGACGGATAGTCC-AAG
1 TGCAAGCCAAAATGACGGATAGTCCAAAG
10008054 TGCAAGCCAAAATGACGGATAGTCCAAAG
1 TGCAAGCCAAAATGACGGATAGTCCAAAG
**
10008083 CACAAGCCAAAATGA
1 TGCAAGCCAAAATGA
10008098 TGGACAGTGC
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 24 0.60
29 16 0.40
ACGTcount: A:0.42, C:0.22, G:0.24, T:0.12
Consensus pattern (29 bp):
TGCAAGCCAAAATGACGGATAGTCCAAAG
Found at i:10008168 original size:79 final size:79
Alignment explanation
Indices: 10008001--10008189 Score: 209
Period size: 79 Copynumber: 2.4 Consensus size: 79
10007991 ACGAGATGAA
* * * *
10008001 AAAGTGTAAGCC-AAATGGTGGACAATGCAAGCCAAAGTGACGGATAGTCCAAGTGCAAGCCAAA
1 AAAGTGCAAGCCAAAATGGTGGACAGTGCAAGCCAAAGTGACGGACAATCCAAGTGCAAGCCAAA
* *
10008065 ATGACGGATAGTCC
66 ATGACAGATAATCC
** * * * *
10008079 AAAGCACAAGCCAAAATGATGGACAGTGCAAGCTAAAGTGGCGGACAATCCAAGTGCAAGTCAAA
1 AAAGTGCAAGCCAAAATGGTGGACAGTGCAAGCCAAAGTGACGGACAATCCAAGTGCAAGCCAAA
* * **
10008144 TTGGCAGATAATTT
66 ATGACAGATAATCC
* *
10008158 AAAGTGCAAGCCAAAATGGTGGGCAGTCCAAG
1 AAAGTGCAAGCCAAAATGGTGGACAGTGCAAG
10008190 AATTTGCAAA
Statistics
Matches: 89, Mismatches: 21, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
78 9 0.10
79 80 0.90
ACGTcount: A:0.39, C:0.19, G:0.26, T:0.16
Consensus pattern (79 bp):
AAAGTGCAAGCCAAAATGGTGGACAGTGCAAGCCAAAGTGACGGACAATCCAAGTGCAAGCCAAA
ATGACAGATAATCC
Found at i:10010390 original size:22 final size:22
Alignment explanation
Indices: 10010365--10010410 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
10010355 GACAGTCCAA
*
10010365 AGTGCAAATCAAAATGACGAAT
1 AGTGCAAACCAAAATGACGAAT
*
10010387 AGTGCAAACCAAAATGACGGAT
1 AGTGCAAACCAAAATGACGAAT
10010409 AG
1 AG
10010411 CCTTGTAACA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.48, C:0.15, G:0.22, T:0.15
Consensus pattern (22 bp):
AGTGCAAACCAAAATGACGAAT
Found at i:10015847 original size:14 final size:14
Alignment explanation
Indices: 10015828--10015856 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
10015818 AACTCTAGAG
10015828 CTTTTATCCTTGTC
1 CTTTTATCCTTGTC
10015842 CTTTTATCCTTGTC
1 CTTTTATCCTTGTC
10015856 C
1 C
10015857 CTTCTCCTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.07, C:0.31, G:0.07, T:0.55
Consensus pattern (14 bp):
CTTTTATCCTTGTC
Found at i:10035674 original size:187 final size:187
Alignment explanation
Indices: 10035359--10035725 Score: 626
Period size: 187 Copynumber: 2.0 Consensus size: 187
10035349 TATTATCAGA
*
10035359 ATTCCTATCAATAACAACTCACAATAGGTGAGAATTACACAGTGCATTTATTCACATCACATTCT
1 ATTCCTATCAATAACAACTCACAATAGGTGAGAATTACACAGTGCATTAATTCACATCACATTCT
* *
10035424 CAATCGTCGCATTAATAAGATCTAATCTCAGGTAATCAGATAGTATCATTCATTCGAGTTAATTT
66 CAATCGTCGAATTAATAAGATCTAATCTCAAGTAATCAGATAGTATCATTCATTCGAGTTAATTT
* * * *
10035489 CATAGTTTTGACCGGCTCATGATGCTACTTACACAAGCTACAAAGAATCCGCAATAG
131 CAGAGTTTTGACCGACTCACGATGCTACTCACACAAGCTACAAAGAATCCGCAATAG
* *
10035546 ATTCCTATCAATAATAACTCACAATAGGTGAGAATTACATAGTGCATTAATTCACATCACATTCT
1 ATTCCTATCAATAACAACTCACAATAGGTGAGAATTACACAGTGCATTAATTCACATCACATTCT
*
10035611 CCATCGTCGAATTAATAAGATCTAATCTCAAGTAATCAGATAGTATCATTCATTCGAGTTAATTT
66 CAATCGTCGAATTAATAAGATCTAATCTCAAGTAATCAGATAGTATCATTCATTCGAGTTAATTT
* *
10035676 CAGAGTTTTGACTGACTCACGATGCTACTCACACAAGCTACAGAGAATCC
131 CAGAGTTTTGACCGACTCACGATGCTACTCACACAAGCTACAAAGAATCC
10035726 ACAACAAATG
Statistics
Matches: 168, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
187 168 1.00
ACGTcount: A:0.35, C:0.21, G:0.13, T:0.31
Consensus pattern (187 bp):
ATTCCTATCAATAACAACTCACAATAGGTGAGAATTACACAGTGCATTAATTCACATCACATTCT
CAATCGTCGAATTAATAAGATCTAATCTCAAGTAATCAGATAGTATCATTCATTCGAGTTAATTT
CAGAGTTTTGACCGACTCACGATGCTACTCACACAAGCTACAAAGAATCCGCAATAG
Found at i:10045542 original size:23 final size:22
Alignment explanation
Indices: 10045500--10045543 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
10045490 AACCAATCCA
*
10045500 ATTCAACATATTTTCAAGATAG
1 ATTCAACATATTTACAAGATAG
*
10045522 ATTCATACATATTTACCAGATA
1 ATTCA-ACATATTTACAAGATA
10045544 ACCTCATCAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.41, C:0.16, G:0.07, T:0.36
Consensus pattern (22 bp):
ATTCAACATATTTACAAGATAG
Found at i:10046246 original size:19 final size:19
Alignment explanation
Indices: 10046222--10046260 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
10046212 ATATGAAAGA
10046222 TATGTTTTGAATTGATATG
1 TATGTTTTGAATTGATATG
*
10046241 TATGTTTTGGATTGATATG
1 TATGTTTTGAATTGATATG
10046260 T
1 T
10046261 TTTGTATTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.23, T:0.54
Consensus pattern (19 bp):
TATGTTTTGAATTGATATG
Found at i:10046918 original size:43 final size:43
Alignment explanation
Indices: 10046867--10047016 Score: 155
Period size: 43 Copynumber: 3.5 Consensus size: 43
10046857 GTTTTCTCAA
*
10046867 GTAAGACCATGTCTGGGACGTTGGCATCGATATGTGATTACAT
1 GTAAGACCATGTCTAGGACGTTGGCATCGATATGTGATTACAT
* * * * **
10046910 GTAAGACCATGTCTAGGACATCGACATCG-TATCTGATT-TGT
1 GTAAGACCATGTCTAGGACGTTGGCATCGATATGTGATTACAT
* *
10046951 GTAAGACCCTATCTAAGG-CAG-TGGCATCGATATGTGATTACAT
1 GTAAGACCATGTCT-AGGAC-GTTGGCATCGATATGTGATTACAT
* *
10046994 GTAAGACCACGTCTGGGACGTTG
1 GTAAGACCATGTCTAGGACGTTG
10047017 TCATTGTACG
Statistics
Matches: 82, Mismatches: 19, Indels: 12
0.73 0.17 0.11
Matches are distributed among these distances:
41 20 0.24
42 22 0.27
43 40 0.49
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (43 bp):
GTAAGACCATGTCTAGGACGTTGGCATCGATATGTGATTACAT
Found at i:10056081 original size:26 final size:26
Alignment explanation
Indices: 10056039--10056089 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
10056029 GTTATTATTA
10056039 TTTTAATAAAAACTGCGCAAGCAGAG
1 TTTTAATAAAAACTGCGCAAGCAGAG
* *
10056065 TTTTAATAAAGATTGCGCAAGCAGA
1 TTTTAATAAAAACTGCGCAAGCAGA
10056090 ATTTCTGGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.41, C:0.14, G:0.20, T:0.25
Consensus pattern (26 bp):
TTTTAATAAAAACTGCGCAAGCAGAG
Found at i:10065470 original size:12 final size:12
Alignment explanation
Indices: 10065453--10065477 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
10065443 TTTATTATTA
10065453 TTATTTCTTTAT
1 TTATTTCTTTAT
10065465 TTATTTCTTTAT
1 TTATTTCTTTAT
10065477 T
1 T
10065478 ATTATTGGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (12 bp):
TTATTTCTTTAT
Found at i:10066370 original size:10 final size:10
Alignment explanation
Indices: 10066331--10066372 Score: 59
Period size: 10 Copynumber: 4.2 Consensus size: 10
10066321 GTTGACAAAG
*
10066331 TGTGTAAAAG
1 TGTGTAAAAT
10066341 TGTGTAAAAT
1 TGTGTAAAAT
10066351 TGTG-ATAAAT
1 TGTGTA-AAAT
10066361 TGTGTAAAAT
1 TGTGTAAAAT
10066371 TG
1 TG
10066373 GTTGACGAGC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
9 1 0.03
10 27 0.93
11 1 0.03
ACGTcount: A:0.38, C:0.00, G:0.24, T:0.38
Consensus pattern (10 bp):
TGTGTAAAAT
Found at i:10073189 original size:26 final size:26
Alignment explanation
Indices: 10073160--10073209 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
10073150 GACCAATTCC
*
10073160 TATAAACATTTCACACAACCATTTTG
1 TATAAACAATTCACACAACCATTTTG
* * *
10073186 TATAACCAATTCATATAACCATTT
1 TATAAACAATTCACACAACCATTT
10073210 GTCATCTGGT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.40, C:0.22, G:0.02, T:0.36
Consensus pattern (26 bp):
TATAAACAATTCACACAACCATTTTG
Found at i:10073401 original size:47 final size:46
Alignment explanation
Indices: 10073292--10073471 Score: 234
Period size: 46 Copynumber: 3.9 Consensus size: 46
10073282 TTATCTTCGA
* * * *
10073292 CATGATGCCATAGTATCTTTCAACTATGGTCTTACTCGTTTTCTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCTGT
* * * *
10073338 CATGTTGCCATGGTATCTTTCAACCAAGGTCTTATTCATTTCCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTT-TCTGT
* *
10073385 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCTGT
* * *
10073431 CATGTTGCTATGGTATCTTTCAACCATGGCCTTACACATTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTT
10073472 CATTTCAGAA
Statistics
Matches: 117, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
46 76 0.65
47 41 0.35
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCTGT
Found at i:10073471 original size:93 final size:93
Alignment explanation
Indices: 10073292--10073472 Score: 263
Period size: 93 Copynumber: 1.9 Consensus size: 93
10073282 TTATCTTCGA
* * * *
10073292 CATGATGCCATAGTATCTTTCAACTATGGTCTTACTCGTTTTCTGTCATGTTGCCATGGTATCTT
1 CATGATGCCATAGTATCTTTCAACCATGGTCTTACACATTTTCTATCATGTTGCCATGGTATCTT
* **
10073357 TCAACCAAGGTCTTATTCATTTCCCCGT
66 TCAACCAAGGCCTTACACATTTCCCCGT
* * *
10073385 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTATCATGTTGCTATGGTATCTT
1 CATGATGCCATAGTATCTTTCAACCATGGTCTTACACATTTTCTATCATGTTGCCATGGTATCTT
*
10073450 TCAACCATGGCCTTACACATTTC
66 TCAACCAAGGCCTTACACATTTC
10073473 ATTTCAGAAA
Statistics
Matches: 77, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 77 1.00
ACGTcount: A:0.20, C:0.25, G:0.14, T:0.40
Consensus pattern (93 bp):
CATGATGCCATAGTATCTTTCAACCATGGTCTTACACATTTTCTATCATGTTGCCATGGTATCTT
TCAACCAAGGCCTTACACATTTCCCCGT
Found at i:10075932 original size:22 final size:24
Alignment explanation
Indices: 10075889--10075932 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
10075879 GATCATTCCA
10075889 TCCTTAAAATATTTTCACTATTGG
1 TCCTTAAAATATTTTCACTATTGG
*
10075913 TCCTTCAAAT-TTTTCA-TATT
1 TCCTTAAAATATTTTCACTATT
10075933 TACACTTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 6 0.32
24 9 0.47
ACGTcount: A:0.27, C:0.18, G:0.05, T:0.50
Consensus pattern (24 bp):
TCCTTAAAATATTTTCACTATTGG
Found at i:10084351 original size:13 final size:13
Alignment explanation
Indices: 10084333--10084359 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
10084323 GCTCGGTAGG
10084333 GACACGCCCGTGT
1 GACACGCCCGTGT
10084346 GACACGCCCGTGT
1 GACACGCCCGTGT
10084359 G
1 G
10084360 CGATTACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:10089234 original size:45 final size:45
Alignment explanation
Indices: 10089153--10089270 Score: 125
Period size: 45 Copynumber: 2.7 Consensus size: 45
10089143 ATTTCCGATA
*
10089153 TGTGTTCTCGTGTAAGACCACGTCTGGGACATTGGCAACGATATG
1 TGTGTTCTCGTGTAAGACCACGTCTGGGACAGTGGCAACGATATG
* * **
10089198 TGTGTTCTCGTGTAAGACC-CTGTGTGGGATAGTGGCATTGATATG
1 TGTGTTCTCGTGTAAGACCAC-GTCTGGGACAGTGGCAACGATATG
** * *
10089243 T-CATT-ACATGTAAGACCACGTCTGGGAC
1 TGTGTTCTCGTGTAAGACCACGTCTGGGAC
10089271 GTTGACATTG
Statistics
Matches: 60, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
43 17 0.28
44 4 0.07
45 39 0.65
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.31
Consensus pattern (45 bp):
TGTGTTCTCGTGTAAGACCACGTCTGGGACAGTGGCAACGATATG
Found at i:10091873 original size:6 final size:6
Alignment explanation
Indices: 10091862--10091912 Score: 102
Period size: 6 Copynumber: 8.5 Consensus size: 6
10091852 AGTCCATTTG
10091862 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
10091910 TTT
1 TTT
10091913 CTTAGACTTA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 45 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTAT
Found at i:10096350 original size:28 final size:28
Alignment explanation
Indices: 10096300--10096363 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 28
10096290 TGGGAAGTAG
* * *
10096300 TTGGGCTTGATGGGCCACATGAATGTGA
1 TTGGGCCTGATGGGCCACATGAACGAGA
* **
10096328 TTGGGCCTGATGGGTCATGTGAACGAGA
1 TTGGGCCTGATGGGCCACATGAACGAGA
10096356 TTGGGCCT
1 TTGGGCCT
10096364 AAAGGGGCCA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.19, C:0.16, G:0.38, T:0.28
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCACATGAACGAGA
Found at i:10096710 original size:27 final size:27
Alignment explanation
Indices: 10096688--10096991 Score: 339
Period size: 27 Copynumber: 11.3 Consensus size: 27
10096678 AGAAATTATT
10096688 GAAATACCCTTGATTTGTAAAATTACC
1 GAAATACCCTTGATTTGTAAAATTACC
* * **
10096715 GAAATACCCTCGATTT-TGAAATTATT
1 GAAATACCCTTGATTTGTAAAATTACC
*
10096741 GAAATACCCTTGATTTGTAAAATTATC
1 GAAATACCCTTGATTTGTAAAATTACC
* * *
10096768 GAAATACCCTCGATTT-TGAAATTACT
1 GAAATACCCTTGATTTGTAAAATTACC
* *
10096794 GAAATACCCTCGATTTGTAAAATTGCC
1 GAAATACCCTTGATTTGTAAAATTACC
** *
10096821 GAAATACCCTCAATTTGTGAAATT-CC
1 GAAATACCCTTGATTTGTAAAATTACC
* *
10096847 TGAAACACCCTCGATTTGTAAAATTACC
1 -GAAATACCCTTGATTTGTAAAATTACC
10096875 GAAATACCCTTGATTTGTAAAATTACC
1 GAAATACCCTTGATTTGTAAAATTACC
* * *
10096902 AAAATACCCCTGATTTGTAAAATTATC
1 GAAATACCCTTGATTTGTAAAATTACC
* *
10096929 AAAATACCCTTG-TAGTGTAAAATTACC
1 GAAATACCCTTGAT-TTGTAAAATTACC
* *
10096956 GAAATACCCTTG-TAGTGTAAAATGACC
1 GAAATACCCTTGAT-TTGTAAAATTACC
*
10096983 GACATACCC
1 GAAATACCC
10096992 CTATAGGATA
Statistics
Matches: 242, Mismatches: 30, Indels: 10
0.86 0.11 0.04
Matches are distributed among these distances:
26 48 0.20
27 192 0.79
28 2 0.01
ACGTcount: A:0.37, C:0.20, G:0.12, T:0.32
Consensus pattern (27 bp):
GAAATACCCTTGATTTGTAAAATTACC
Found at i:10097003 original size:27 final size:27
Alignment explanation
Indices: 10096863--10097008 Score: 109
Period size: 27 Copynumber: 5.4 Consensus size: 27
10096853 ACCCTCGATT
* * *
10096863 TGTAAAATTACCGAAATACCCTTGAT-T
1 TGTAAAATGACCGAAATACCCCT-ATAG
* * *
10096890 TGTAAAATTACCAAAATACCCCTGAT-T
1 TGTAAAATGACCGAAATACCCCT-ATAG
* * * * *
10096917 TGTAAAATTATCAAAATACCCTTGTAG
1 TGTAAAATGACCGAAATACCCCTATAG
* * *
10096944 TGTAAAATTACCGAAATACCCTTGTAG
1 TGTAAAATGACCGAAATACCCCTATAG
*
10096971 TGTAAAATGACCGACATACCCCTATAG
1 TGTAAAATGACCGAAATACCCCTATAG
10096998 -GATAAAATGAC
1 TG-TAAAATGAC
10097009 TGTTTTGCCC
Statistics
Matches: 105, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
26 2 0.02
27 103 0.98
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.29
Consensus pattern (27 bp):
TGTAAAATGACCGAAATACCCCTATAG
Found at i:10104588 original size:19 final size:18
Alignment explanation
Indices: 10104538--10104590 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
10104528 CATACCTTTT
10104538 CAAAACATTATTCATTTA
1 CAAAACATTATTCATTTA
* * *
10104556 CAAATCAATATTCAGTTTC
1 CAAAACATTATTCA-TTTA
*
10104575 CAAAACATTTTTCATT
1 CAAAACATTATTCATT
10104591 ACTGAAGCTT
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
18 14 0.50
19 14 0.50
ACGTcount: A:0.40, C:0.19, G:0.02, T:0.40
Consensus pattern (18 bp):
CAAAACATTATTCATTTA
Found at i:10109294 original size:3 final size:3
Alignment explanation
Indices: 10109286--10109313 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
10109276 GTGAAACAGA
10109286 CTG CTG CTG CTG CTG CTG CTG CTG CTG C
1 CTG CTG CTG CTG CTG CTG CTG CTG CTG C
10109314 AACAGTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.36, G:0.32, T:0.32
Consensus pattern (3 bp):
CTG
Found at i:10111694 original size:39 final size:39
Alignment explanation
Indices: 10111651--10111726 Score: 134
Period size: 39 Copynumber: 1.9 Consensus size: 39
10111641 AAAGCATGAT
* *
10111651 TAATTTCAATAAAGTGTTGCCTATTAAAAAGCCTAGAAC
1 TAATTTCAATAAACTGTTGCCTATTAAAAAGACTAGAAC
10111690 TAATTTCAATAAACTGTTGCCTATTAAAAAGACTAGA
1 TAATTTCAATAAACTGTTGCCTATTAAAAAGACTAGA
10111727 GTTTATCATG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.42, C:0.14, G:0.12, T:0.32
Consensus pattern (39 bp):
TAATTTCAATAAACTGTTGCCTATTAAAAAGACTAGAAC
Found at i:10120250 original size:24 final size:24
Alignment explanation
Indices: 10120193--10120244 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
10120183 AAAATAGTGT
*
10120193 CAAATCATTAAATTTTAAAGATGA
1 CAAATCATTAAATTTTAAAGATAA
10120217 CAAATCATTAAATTTTAAAGATAA
1 CAAATCATTAAATTTTAAAGATAA
10120241 CAAA
1 CAAA
10120245 GTATTATTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.54, C:0.10, G:0.06, T:0.31
Consensus pattern (24 bp):
CAAATCATTAAATTTTAAAGATAA
Found at i:10120583 original size:13 final size:14
Alignment explanation
Indices: 10120558--10120596 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
10120548 AGGTTTGAAA
10120558 TTTAAGATTTAAGG
1 TTTAAGATTTAAGG
10120572 TTTAAG-TTTAAGG
1 TTTAAGATTTAAGG
*
10120585 TTCAAGAATTTA
1 TTTAAG-ATTTA
10120597 GAGTTTAGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 12 0.55
14 6 0.27
15 4 0.18
ACGTcount: A:0.36, C:0.03, G:0.18, T:0.44
Consensus pattern (14 bp):
TTTAAGATTTAAGG
Found at i:10121276 original size:21 final size:21
Alignment explanation
Indices: 10121247--10121290 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
10121237 AGCAAAAAAA
*
10121247 TGCATTATATAAGAACCCACT
1 TGCACTATATAAGAACCCACT
*
10121268 TGCACTATATAAGAGCCCACT
1 TGCACTATATAAGAACCCACT
10121289 TG
1 TG
10121291 AAAAGTAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (21 bp):
TGCACTATATAAGAACCCACT
Found at i:10121554 original size:5 final size:5
Alignment explanation
Indices: 10121546--10121575 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
10121536 AAATATAATA
10121546 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT
10121576 ATAAATATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:10121583 original size:37 final size:39
Alignment explanation
Indices: 10121530--10121605 Score: 113
Period size: 38 Copynumber: 2.0 Consensus size: 39
10121520 TTCATATCTA
10121530 TATTTTAAATATAATATTTATTTTATTT-TATTT-TATTT
1 TATTTTAAATATAATATTTA-TTTATTTATATTTATATTT
*
10121568 TATTTTATATA-AATATTTATTTATTTATATTTATATTT
1 TATTTTAAATATAATATTTATTTATTTATATTTATATTT
10121606 GTTCGGTAAC
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
36 7 0.20
37 13 0.37
38 15 0.43
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (39 bp):
TATTTTAAATATAATATTTATTTATTTATATTTATATTT
Found at i:10121600 original size:10 final size:9
Alignment explanation
Indices: 10121544--10121601 Score: 53
Period size: 10 Copynumber: 5.8 Consensus size: 9
10121534 TTAAATATAA
10121544 TATTTATTT
1 TATTTATTT
10121553 TATTTTATTT
1 TA-TTTATTT
10121563 TATTTTATTT
1 TA-TTTATTT
*
10121573 TATATAAATATT
1 TAT-T-TAT-TT
10121585 TATTTATTT
1 TATTTATTT
10121594 ATATTTAT
1 -TATTTAT
10121602 ATTTGTTCGG
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
9 5 0.12
10 29 0.69
11 3 0.07
12 5 0.12
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (9 bp):
TATTTATTT
Found at i:10125537 original size:14 final size:14
Alignment explanation
Indices: 10125514--10125556 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
10125504 GTGGAGAGAT
10125514 CAAAAGAAAAAGAG
1 CAAAAGAAAAAGAG
*
10125528 CAAAATAAAAAGAATG
1 CAAAAGAAAAAG-A-G
10125544 -AAAAGAAAAAGAG
1 CAAAAGAAAAAGAG
10125557 TAGAAAAAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
13 1 0.04
14 12 0.48
15 11 0.44
16 1 0.04
ACGTcount: A:0.72, C:0.05, G:0.19, T:0.05
Consensus pattern (14 bp):
CAAAAGAAAAAGAG
Found at i:10128815 original size:26 final size:25
Alignment explanation
Indices: 10128770--10128823 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 25
10128760 TATGTCTCAT
* * *
10128770 ATTTAATATGTCTGGTTTAGGACATA
1 ATTTAATATGTCTAGATTAGAACA-A
*
10128796 ATTTAATGTGTCTAGATTAGAACAA
1 ATTTAATATGTCTAGATTAGAACAA
10128821 ATT
1 ATT
10128824 AATTAGCTGC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.35, C:0.07, G:0.17, T:0.41
Consensus pattern (25 bp):
ATTTAATATGTCTAGATTAGAACAA
Found at i:10147749 original size:26 final size:26
Alignment explanation
Indices: 10147717--10147775 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 26
10147707 TTATCCCAGC
* * *
10147717 AAAATTTTGATGCTTTTATCTCTAGT
1 AAAATTTTGACGATTTTACCTCTAGT
* *
10147743 AAAATTTTGGCGATTTTGCCTCTAGT
1 AAAATTTTGACGATTTTACCTCTAGT
10147769 AAAATTT
1 AAAATTT
10147776 CTAGAAGATA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.12, G:0.14, T:0.46
Consensus pattern (26 bp):
AAAATTTTGACGATTTTACCTCTAGT
Found at i:10148347 original size:28 final size:27
Alignment explanation
Indices: 10148268--10148339 Score: 108
Period size: 27 Copynumber: 2.6 Consensus size: 27
10148258 CTTTTAATAA
* *
10148268 GTCTTAGTTAATACACATCATTAATTT
1 GTCTTAGCTAATACATATCATTAATTT
10148295 GTCTTAGCTAATACATATCATTAATTT
1 GTCTTAGCTAATACATATCATTAATTT
*
10148322 GTCTTAGCGTATTACATA
1 GTCTTAGC-TAATACATA
10148340 ATTTTAATAT
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 33 0.80
28 8 0.20
ACGTcount: A:0.32, C:0.15, G:0.10, T:0.43
Consensus pattern (27 bp):
GTCTTAGCTAATACATATCATTAATTT
Found at i:10149242 original size:13 final size:13
Alignment explanation
Indices: 10149224--10149248 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10149214 TTTACAGAGT
10149224 GTCAGAAAATTTC
1 GTCAGAAAATTTC
10149237 GTCAGAAAATTT
1 GTCAGAAAATTT
10149249 TAATGTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.12, G:0.16, T:0.32
Consensus pattern (13 bp):
GTCAGAAAATTTC
Found at i:10151208 original size:67 final size:67
Alignment explanation
Indices: 10151100--10151232 Score: 203
Period size: 67 Copynumber: 2.0 Consensus size: 67
10151090 TGAGCATATG
* **
10151100 TTACAGGGAATTTAGCCTGGACTGGTAATCCCGCTGTAAGAAATGAGGTTCGTGGGAGTGTGCTC
1 TTACAGGGAATTTAGCCTGGACTGGTAATCCCACTGTAAGAAATGAGGTTCGCAGGAGTGTGCTC
10151165 TC
66 TC
* * * *
10151167 TTACAGGGGATTTAGCTTGGACTGGTAATCCTATTGTAAGAAATGAGGTTCGCAGGAGTGTGCTC
1 TTACAGGGAATTTAGCCTGGACTGGTAATCCCACTGTAAGAAATGAGGTTCGCAGGAGTGTGCTC
10151232 T
66 T
10151233 TTGAAAAGGA
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
67 59 1.00
ACGTcount: A:0.23, C:0.16, G:0.31, T:0.30
Consensus pattern (67 bp):
TTACAGGGAATTTAGCCTGGACTGGTAATCCCACTGTAAGAAATGAGGTTCGCAGGAGTGTGCTC
TC
Found at i:10154543 original size:16 final size:15
Alignment explanation
Indices: 10154522--10154563 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
10154512 AAAAGAAAGT
10154522 GAAAAAAATGAGAAAA
1 GAAAAAAATGA-AAAA
*
10154538 GAAAAAGATGAAAAA
1 GAAAAAAATGAAAAA
10154553 GAAAAAGAATG
1 GAAAAA-AATG
10154564 TGAGAAAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 10 0.43
16 13 0.57
ACGTcount: A:0.71, C:0.00, G:0.21, T:0.07
Consensus pattern (15 bp):
GAAAAAAATGAAAAA
Found at i:10154552 original size:15 final size:16
Alignment explanation
Indices: 10154522--10154560 Score: 62
Period size: 15 Copynumber: 2.5 Consensus size: 16
10154512 AAAAGAAAGT
*
10154522 GAAAAAAATGAGAAAA
1 GAAAAAGATGAGAAAA
10154538 GAAAAAGATGA-AAAA
1 GAAAAAGATGAGAAAA
10154553 GAAAAAGA
1 GAAAAAGA
10154561 ATGTGAGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 12 0.55
16 10 0.45
ACGTcount: A:0.74, C:0.00, G:0.21, T:0.05
Consensus pattern (16 bp):
GAAAAAGATGAGAAAA
Found at i:10157609 original size:20 final size:19
Alignment explanation
Indices: 10157563--10157609 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
10157553 ACTCAGCCTT
* *
10157563 AGCTCTATGAGTTCGAATC
1 AGCTCGATGAGTTCAAATC
*
10157582 AACTCGATGAGTTCAAATTC
1 AGCTCGATGAGTTCAAA-TC
10157602 AGCTCGAT
1 AGCTCGAT
10157610 CTAATTTATG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
19 14 0.61
20 9 0.39
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (19 bp):
AGCTCGATGAGTTCAAATC
Found at i:10164147 original size:17 final size:18
Alignment explanation
Indices: 10164125--10164159 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
10164115 ATCATCTCCA
*
10164125 TCTTTTC-TCTGTTTTTT
1 TCTTTTCTTCTCTTTTTT
10164142 TCTTTTCTTCTCTTTTTT
1 TCTTTTCTTCTCTTTTTT
10164160 GAGTTCTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.00, C:0.20, G:0.03, T:0.77
Consensus pattern (18 bp):
TCTTTTCTTCTCTTTTTT
Found at i:10172613 original size:44 final size:44
Alignment explanation
Indices: 10172548--10172674 Score: 159
Period size: 44 Copynumber: 2.9 Consensus size: 44
10172538 CATGTAACGC
10172548 ATCCATAATGAACTCGGACCAACTCAACGAGCTCGGATGCTCGT
1 ATCCATAATGAACTCGGACCAACTCAACGAGCTCGGATGCTCGT
*
10172592 ATCCATAATGAACTCGTACCAACTCAACGAGCTCGGATGC-C-T
1 ATCCATAATGAACTCGGACCAACTCAACGAGCTCGGATGCTCGT
* * * * *
10172634 CATACATATCACGAACCCAGACCAACTCAACGAGTTCGGAT
1 -ATCCATA--ATGAACTCGGACCAACTCAACGAGCTCGGAT
10172675 TTCTAAATTC
Statistics
Matches: 73, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
42 1 0.01
43 7 0.10
44 39 0.53
45 26 0.36
ACGTcount: A:0.32, C:0.31, G:0.17, T:0.20
Consensus pattern (44 bp):
ATCCATAATGAACTCGGACCAACTCAACGAGCTCGGATGCTCGT
Found at i:10176882 original size:50 final size:53
Alignment explanation
Indices: 10176806--10176903 Score: 130
Period size: 51 Copynumber: 1.9 Consensus size: 53
10176796 ATGGTTAAGG
* *
10176806 TTTCTCCGAAATGAAAACGGAGAAATG-AAATCATTTGG-AAATGAATGTGGT
1 TTTCTCCAAAATGAAAACGGAGAAATGAAAATCACTTGGAAAATGAATGTGGT
* * *
10176857 TTTCTCCAAAATGAAAA-TGATAAATGAAAATGACTTGGAAAATGAAT
1 TTTCTCCAAAATGAAAACGGAGAAATGAAAATCACTTGGAAAATGAAT
10176904 TTATGTTTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
50 7 0.17
51 25 0.62
52 8 0.20
ACGTcount: A:0.44, C:0.09, G:0.19, T:0.28
Consensus pattern (53 bp):
TTTCTCCAAAATGAAAACGGAGAAATGAAAATCACTTGGAAAATGAATGTGGT
Found at i:10176883 original size:13 final size:13
Alignment explanation
Indices: 10176865--10176889 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10176855 GTTTTCTCCA
10176865 AAATGAAAATGAT
1 AAATGAAAATGAT
10176878 AAATGAAAATGA
1 AAATGAAAATGA
10176890 CTTGGAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.16, T:0.20
Consensus pattern (13 bp):
AAATGAAAATGAT
Found at i:10180121 original size:5 final size:5
Alignment explanation
Indices: 10180111--10180273 Score: 326
Period size: 5 Copynumber: 32.6 Consensus size: 5
10180101 GAATAAATAA
10180111 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
10180161 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
10180211 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
10180261 ATTAT ATTAT ATT
1 ATTAT ATTAT ATT
10180274 TGTTTAATAA
Statistics
Matches: 158, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 158 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
ATTAT
Found at i:10180301 original size:14 final size:14
Alignment explanation
Indices: 10180282--10180311 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
10180272 TTTGTTTAAT
*
10180282 AATAAAATAAAAAG
1 AATAAAAGAAAAAG
10180296 AATAAAAGAAAAAG
1 AATAAAAGAAAAAG
10180310 AA
1 AA
10180312 AAAGAGACTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.80, C:0.00, G:0.10, T:0.10
Consensus pattern (14 bp):
AATAAAAGAAAAAG
Found at i:10185741 original size:21 final size:21
Alignment explanation
Indices: 10185711--10185778 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 21
10185701 GGCCTGTTCT
10185711 CACGGTCGTGTCCCTAAACCA
1 CACGGTCGTGTCCCTAAACCA
* ** *
10185732 CACGAG-CGTGTGCCTCTATCA
1 CACG-GTCGTGTCCCTAAACCA
*
10185753 CACGGTCGTGTCCCTGAACCA
1 CACGGTCGTGTCCCTAAACCA
10185774 CACGG
1 CACGG
10185779 GCATGTGCCT
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
20 1 0.03
21 35 0.95
22 1 0.03
ACGTcount: A:0.21, C:0.37, G:0.24, T:0.19
Consensus pattern (21 bp):
CACGGTCGTGTCCCTAAACCA
Found at i:10185773 original size:42 final size:42
Alignment explanation
Indices: 10185711--10185799 Score: 151
Period size: 42 Copynumber: 2.1 Consensus size: 42
10185701 GGCCTGTTCT
*
10185711 CACGGTCGTGTCCCTAAACCACACGAGCGTGTGCCTCTATCA
1 CACGGTCGTGTCCCTAAACCACACGAGCATGTGCCTCTATCA
* *
10185753 CACGGTCGTGTCCCTGAACCACACGGGCATGTGCCTCTATCA
1 CACGGTCGTGTCCCTAAACCACACGAGCATGTGCCTCTATCA
10185795 CACGG
1 CACGG
10185800 CCATGTACTG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.20, C:0.36, G:0.24, T:0.20
Consensus pattern (42 bp):
CACGGTCGTGTCCCTAAACCACACGAGCATGTGCCTCTATCA
Found at i:10185796 original size:21 final size:21
Alignment explanation
Indices: 10185730--10185805 Score: 71
Period size: 21 Copynumber: 3.6 Consensus size: 21
10185720 GTCCCTAAAC
* *
10185730 CACACGAGCGTGTGCCTCTAT
1 CACACGGGCATGTGCCTCTAT
* * * ** *
10185751 CACACGGTCGTGTCCCTGAAC
1 CACACGGGCATGTGCCTCTAT
10185772 CACACGGGCATGTGCCTCTAT
1 CACACGGGCATGTGCCTCTAT
*
10185793 CACACGGCCATGT
1 CACACGGGCATGT
10185806 ACTGCCCTTC
Statistics
Matches: 42, Mismatches: 13, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.20, C:0.36, G:0.24, T:0.21
Consensus pattern (21 bp):
CACACGGGCATGTGCCTCTAT
Found at i:10214966 original size:27 final size:27
Alignment explanation
Indices: 10214936--10215113 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
10214926 ATATTGAGTC
* * * *
10214936 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
10214963 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
10214990 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
10215018 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
10215045 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
10215072 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
10215099 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
10215114 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:10215075 original size:82 final size:81
Alignment explanation
Indices: 10214957--10215112 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
10214947 TGCTATATAA
* *
10214957 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
10215022 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
10215039 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
10215103 CACTTAGTGC
65 CACTTAGTGC
10215113 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:10228872 original size:13 final size:13
Alignment explanation
Indices: 10228854--10228878 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10228844 GAATTAGTAT
10228854 GTATGAAAATTTC
1 GTATGAAAATTTC
10228867 GTATGAAAATTT
1 GTATGAAAATTT
10228879 AATCGTTTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.04, G:0.16, T:0.40
Consensus pattern (13 bp):
GTATGAAAATTTC
Found at i:10233150 original size:43 final size:43
Alignment explanation
Indices: 10233100--10233243 Score: 112
Period size: 43 Copynumber: 3.2 Consensus size: 43
10233090 GTCCCAGACG
10233100 TGGTCTTACATGGGATCTCGCATCAATGCCAACAACCTAGCTA
1 TGGTCTTACATGGGATCTCGCATCAATGCCAACAACCTAGCTA
* * ** * ** * * * *
10233143 TGGTCTTACA-CGAAGTCTCATAACGGTGCCGATGCCATGTCCCAGAC-G
1 TGGTCTTACATGGGA-TCTCGCATCAATGCC-A--ACA--ACCTAG-CTA
10233191 TGGTCTTACATGGGATCTCGCATCAATGCCAACAACCTAGCTA
1 TGGTCTTACATGGGATCTCGCATCAATGCCAACAACCTAGCTA
10233234 TGGTCTTACA
1 TGGTCTTACA
10233244 CGAAGTCTCA
Statistics
Matches: 70, Mismatches: 22, Indels: 18
0.64 0.20 0.16
Matches are distributed among these distances:
42 3 0.04
43 34 0.49
44 1 0.01
45 2 0.03
46 2 0.03
47 1 0.01
48 24 0.34
49 3 0.04
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (43 bp):
TGGTCTTACATGGGATCTCGCATCAATGCCAACAACCTAGCTA
Found at i:10233198 original size:48 final size:48
Alignment explanation
Indices: 10233142--10233445 Score: 194
Period size: 48 Copynumber: 6.4 Consensus size: 48
10233132 CAACCTAGCT
*
10233142 ATGGTCTTACACGA-AGTCTCATAACGGTGCCGATGCCATGTCCCAGAC
1 ATGGTCTTACACGAGA-TCTCATAACGATGCCGATGCCATGTCCCAGAC
* * * ** * * * * *
10233190 GTGGTCTTACATGGGATCTCGCATCAATGCC-A--ACA--ACCTAG-C
1 ATGGTCTTACACGAGATCTCATAACGATGCCGATGCCATGTCCCAGAC
*
10233232 TATGGTCTTACACGA-AGTCTCATAACGGTGCCGATGCCATGTCCCAGAC
1 -ATGGTCTTACACGAGA-TCTCATAACGATGCCGATGCCATGTCCCAGAC
* * ** * * *
10233281 ATGGTCTTATACGAGACCTCATGTCGATGCCAATGCCATATCCCAGAT
1 ATGGTCTTACACGAGATCTCATAACGATGCCGATGCCATGTCCCAGAC
* * *
10233329 ATGGTCTTACATGGGATCTCAT-ACTGATACCGATGCCATGTCCCAGAC
1 ATGGTCTTACACGAGATCTCATAAC-GATGCCGATGCCATGTCCCAGAC
* ** * * * * * * * * *
10233377 GTCATCTTATATGGGATCTCTTATCAATGCCGATGCCATATCCTAGAT
1 ATGGTCTTACACGAGATCTCATAACGATGCCGATGCCATGTCCCAGAC
*
10233425 ATGGTCTTACACGGGATCTCA
1 ATGGTCTTACACGAGATCTCA
10233446 ATACTCACAT
Statistics
Matches: 188, Mismatches: 56, Indels: 24
0.70 0.21 0.09
Matches are distributed among these distances:
42 2 0.01
43 25 0.13
44 1 0.01
45 2 0.01
46 2 0.01
47 2 0.01
48 150 0.80
49 4 0.02
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (48 bp):
ATGGTCTTACACGAGATCTCATAACGATGCCGATGCCATGTCCCAGAC
Found at i:10233313 original size:91 final size:91
Alignment explanation
Indices: 10233078--10233289 Score: 406
Period size: 91 Copynumber: 2.3 Consensus size: 91
10233068 CATGAAAAGA
*
10233078 TGCCAATGCCATGTCCCAGACGTGGTCTTACATGGGATCTCGCATCAATGCCAACAACCTAGCTA
1 TGCCGATGCCATGTCCCAGACGTGGTCTTACATGGGATCTCGCATCAATGCCAACAACCTAGCTA
10233143 TGGTCTTACACGAAGTCTCATAACGG
66 TGGTCTTACACGAAGTCTCATAACGG
10233169 TGCCGATGCCATGTCCCAGACGTGGTCTTACATGGGATCTCGCATCAATGCCAACAACCTAGCTA
1 TGCCGATGCCATGTCCCAGACGTGGTCTTACATGGGATCTCGCATCAATGCCAACAACCTAGCTA
10233234 TGGTCTTACACGAAGTCTCATAACGG
66 TGGTCTTACACGAAGTCTCATAACGG
*
10233260 TGCCGATGCCATGTCCCAGACATGGTCTTA
1 TGCCGATGCCATGTCCCAGACGTGGTCTTA
10233290 TACGAGACCT
Statistics
Matches: 119, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
91 119 1.00
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (91 bp):
TGCCGATGCCATGTCCCAGACGTGGTCTTACATGGGATCTCGCATCAATGCCAACAACCTAGCTA
TGGTCTTACACGAAGTCTCATAACGG
Found at i:10233371 original size:96 final size:97
Alignment explanation
Indices: 10233262--10233450 Score: 263
Period size: 96 Copynumber: 2.0 Consensus size: 97
10233252 CATAACGGTG
** * *
10233262 CCGATGCCATGTCCCAGACATGGTCTTATACGAGACCTCATGTCGATGCCAATGCCATATCCCAG
1 CCGATGCCATGTCCCAGACATCATCTTATACGAGACCTCATATCAATGCCAATGCCATATCCCAG
*
10233327 ATATGGTCTTACATGGGATCTC-ATACTGATA
66 ATATGGTCTTACACGGGATCTCAATACTGATA
* * * * * * *
10233358 CCGATGCCATGTCCCAGACGTCATCTTATATGGGATCTCTTATCAATGCCGATGCCATATCCTAG
1 CCGATGCCATGTCCCAGACATCATCTTATACGAGACCTCATATCAATGCCAATGCCATATCCCAG
10233423 ATATGGTCTTACACGGGATCTCAATACT
66 ATATGGTCTTACACGGGATCTCAATACT
10233451 CACATGTCGT
Statistics
Matches: 80, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
96 75 0.94
97 5 0.06
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (97 bp):
CCGATGCCATGTCCCAGACATCATCTTATACGAGACCTCATATCAATGCCAATGCCATATCCCAG
ATATGGTCTTACACGGGATCTCAATACTGATA
Found at i:10237798 original size:18 final size:18
Alignment explanation
Indices: 10237775--10237810 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
10237765 TCGGTATCAC
10237775 ATATCGATGCCATGGTCT
1 ATATCGATGCCATGGTCT
10237793 ATATCGATGCCATGGTCT
1 ATATCGATGCCATGGTCT
10237811 TACTCGTACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.33
Consensus pattern (18 bp):
ATATCGATGCCATGGTCT
Found at i:10243320 original size:48 final size:47
Alignment explanation
Indices: 10243268--10243415 Score: 127
Period size: 48 Copynumber: 3.1 Consensus size: 47
10243258 TATACGAGAC
* *
10243268 CTCATGTCGATGCCAATGCCATATCCCAAATATGGTCTTGCATGGGAT
1 CTCAT-TCGATGCCGATGCCATATCCCAAATATGGTCTTACATGGGAT
* * ** * * * * *
10243316 CTCATACTAATATCGATGCCATGTCCTAAACGA-GGTTTTATATGGGAT
1 CTCATTC-GATGCCGATGCCATATCCCAAA-TATGGTCTTACATGGGAT
* * *
10243364 CTCTTATCGAGGCCGATGCCATATCCCAAATATGGTCTTACATGAGAT
1 CTCAT-TCGATGCCGATGCCATATCCCAAATATGGTCTTACATGGGAT
10243412 CTCA
1 CTCA
10243416 ATATTCACAT
Statistics
Matches: 72, Mismatches: 24, Indels: 8
0.69 0.23 0.08
Matches are distributed among these distances:
47 2 0.03
48 68 0.94
49 2 0.03
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (47 bp):
CTCATTCGATGCCGATGCCATATCCCAAATATGGTCTTACATGGGAT
Found at i:10244516 original size:13 final size:13
Alignment explanation
Indices: 10244498--10244523 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
10244488 GCCCAAACGT
10244498 CAAAATTTTCAAA
1 CAAAATTTTCAAA
10244511 CAAAATTTTCAAA
1 CAAAATTTTCAAA
10244524 AAATCATTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
CAAAATTTTCAAA
Found at i:10245664 original size:18 final size:18
Alignment explanation
Indices: 10245634--10245680 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
10245624 TGGACCATTA
*
10245634 CAATAACAATAATTAGTG
1 CAATAACAATAATCAGTG
* *
10245652 CAGTAACAGTAATCAGTG
1 CAATAACAATAATCAGTG
10245670 CAATAACAATA
1 CAATAACAATA
10245681 TACAAGTCCT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.49, C:0.15, G:0.13, T:0.23
Consensus pattern (18 bp):
CAATAACAATAATCAGTG
Found at i:10246040 original size:27 final size:27
Alignment explanation
Indices: 10245997--10246314 Score: 424
Period size: 27 Copynumber: 11.8 Consensus size: 27
10245987 GTATACATCG
* * *
10245997 CATAA-GGAAAAACAGTCATCTTACCA
1 CATAAGGGCAAAATAGTCATTTTACCA
*
10246023 TATAAGGGCAAAATAGTCATTTTACCA
1 CATAAGGGCAAAATAGTCATTTTACCA
*
10246050 CATAAGGGCAAAATAGTCATTTTACTA
1 CATAAGGGCAAAATAGTCATTTTACCA
*
10246077 CATAAGGGCAAAAAAGTCATTTTACCA
1 CATAAGGGCAAAATAGTCATTTTACCA
*
10246104 CATAAGGGCAAAACAGTCATTTTACCA
1 CATAAGGGCAAAATAGTCATTTTACCA
* *
10246131 CATTAA-GGCAAAATAGTCACTATACCA
1 CA-TAAGGGCAAAATAGTCATTTTACCA
* * *
10246158 CATAAGAGCAAAGTAGTCATTTTACCG
1 CATAAGGGCAAAATAGTCATTTTACCA
*
10246185 CATATGGGCAAAATAGTCATTTTACCA
1 CATAAGGGCAAAATAGTCATTTTACCA
* *
10246212 CAAAAGGGCAAAATAATCATTTTACCA
1 CATAAGGGCAAAATAGTCATTTTACCA
* * * *
10246239 TACAAGGGCAAAACAATCATTTTACCA
1 CATAAGGGCAAAATAGTCATTTTACCA
*
10246266 CATAAGGGCAAAATAATCATTTTACCA
1 CATAAGGGCAAAATAGTCATTTTACCA
*
10246293 GATAAGGGCAAAATAGTCATTT
1 CATAAGGGCAAAATAGTCATTT
10246315 ATCAATTTGG
Statistics
Matches: 257, Mismatches: 32, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
26 7 0.03
27 247 0.96
28 3 0.01
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.25
Consensus pattern (27 bp):
CATAAGGGCAAAATAGTCATTTTACCA
Found at i:10249495 original size:17 final size:18
Alignment explanation
Indices: 10249475--10249511 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
10249465 ATAAACTATT
*
10249475 AATAATTTAAT-AAATTA
1 AATAATTAAATAAAATTA
10249492 AATAATTAAATAAAATTA
1 AATAATTAAATAAAATTA
10249510 AA
1 AA
10249512 ATTTAGGAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
AATAATTAAATAAAATTA
Found at i:10263827 original size:27 final size:27
Alignment explanation
Indices: 10263795--10263876 Score: 92
Period size: 27 Copynumber: 3.0 Consensus size: 27
10263785 AGCTGCTAGA
*
10263795 AACAGTAAATGTGGCAAAGCTACCAGT
1 AACAGTAAATGTGGCAAAGCCACCAGT
* * *
10263822 ATCAGTAATTGTGGCATAGCCACCAGT
1 AACAGTAAATGTGGCAAAGCCACCAGT
* * * *
10263849 AACAGTGAATGTGACATAGTCACCAGT
1 AACAGTAAATGTGGCAAAGCCACCAGT
10263876 A
1 A
10263877 TATTACTTCC
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
AACAGTAAATGTGGCAAAGCCACCAGT
Found at i:10264051 original size:27 final size:27
Alignment explanation
Indices: 10264017--10264392 Score: 396
Period size: 27 Copynumber: 13.9 Consensus size: 27
10264007 GGGCATAATC
* * *
10264017 GTCATTTTACCATATAGGTGTATTACG
1 GTCATTTTACCCTATAGGGGCATTACG
* * * *
10264044 GTCGTTTTACCCTACAAGGGAATTACG
1 GTCATTTTACCCTATAGGGGCATTACG
* *
10264071 GTCATTTTACCCTTTAGGGGCATTATG
1 GTCATTTTACCCTATAGGGGCATTACG
* * *
10264098 GTCGTTTTACCCTACAGGTGCATTACG
1 GTCATTTTACCCTATAGGGGCATTACG
* *
10264125 GTCATTTTACCCTACAAGGGCATTACG
1 GTCATTTTACCCTATAGGGGCATTACG
* *
10264152 ATTATTTTACCCTATAGGGGCATTACG
1 GTCATTTTACCCTATAGGGGCATTACG
* * *
10264179 GTCATTTTACCTTACAGGGGGATTACG
1 GTCATTTTACCCTATAGGGGCATTACG
* * *
10264206 GTCATTTTACCTTACAAGGGCATTACG
1 GTCATTTTACCCTATAGGGGCATTACG
* * * ** *
10264233 GTCATTTTATCCTACAGAGTTATTAACA
1 GTCATTTTACCCTATAGGGGCATT-ACG
*
10264261 GTCATTTTACCCTACAGGGGCATTACG
1 GTCATTTTACCCTATAGGGGCATTACG
10264288 GTCA-TTTACCCTATAGGGGCATTACG
1 GTCATTTTACCCTATAGGGGCATTACG
* * *
10264314 GTCATTTTACCCTACAGGGGTATTACA
1 GTCATTTTACCCTATAGGGGCATTACG
*
10264341 GTCATTTTACCCTAT-GAGGGTATTACG
1 GTCATTTTACCCTATAG-GGGCATTACG
* * *
10264368 ATTATTTTACCCTATAGGGGTATTA
1 GTCATTTTACCCTATAGGGGCATTA
10264393 TGGTTAAATA
Statistics
Matches: 294, Mismatches: 51, Indels: 8
0.83 0.14 0.02
Matches are distributed among these distances:
26 26 0.09
27 245 0.83
28 23 0.08
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCCTATAGGGGCATTACG
Found at i:10265997 original size:40 final size:40
Alignment explanation
Indices: 10265914--10266176 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
10265904 TTGAATGCTG
* * * * * *
10265914 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
10265954 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
10265994 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
10266034 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
10266074 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
10266114 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
10266153 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
10266177 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:10266196 original size:79 final size:80
Alignment explanation
Indices: 10265953--10266211 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
10265943 AAGTGAATAT
* * * * * *
10265953 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
10266017 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
10266033 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
10266098 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
10266113 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
10266177 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
10266192 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
10266212 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:10273950 original size:40 final size:40
Alignment explanation
Indices: 10273867--10274129 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
10273857 TTGAATGCTG
* * * * * *
10273867 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
10273907 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
10273947 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
10273987 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
10274027 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
10274067 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
10274106 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
10274130 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:10274149 original size:79 final size:80
Alignment explanation
Indices: 10273906--10274164 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
10273896 AAGTGAATAT
* * * * * *
10273906 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
10273970 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
10273986 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
10274051 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
10274066 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
10274130 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
10274145 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
10274165 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:10277578 original size:272 final size:272
Alignment explanation
Indices: 10277092--10277629 Score: 943
Period size: 272 Copynumber: 2.0 Consensus size: 272
10277082 GACAAGAGAA
* * *
10277092 CAAAATAAATACTCTTCTTACCTTGCCACGACTTGAACCTTAGACCTCAAGAAAACTACATACGC
1 CAAAATAAATACTCTTCTTACCTTGCCACAACTTGAACCTTAGACCTCAAGAAAACTACACACAC
10277157 CACCTACCACTGCACCATAAGCTCTTTTTGTGACACATTTTACCCACAAATATTTATAAGGCCTA
66 CACCTACCACTGCACCATAAGCTCTTTTTGTGACACATTTTACCCACAAATATTTATAAGGCCTA
* * * *
10277222 CAAGCTAAAGCCAAGGTTCTCTTAAGGGGAAAAACTAAAATTTTTGCAAAAGCCCAGACTTGAAC
131 CAAGCTAAAGCCAAGGTTCACTTAAAGGGAAAAACTAAAATTGTTGCAAAAGCCCAGACATGAAC
* *
10277287 CCAGGCTTCTCAAACACTCCCAACCACATCCAAATCACTTAGCCAATAAAGCAAACATGAATTTT
196 CCAGGCTTCTCAAACACTCCCAACCACACCCAAATCACTTAGCCAATAAAGCAAACATGAAATTT
10277352 GTGCCAAGGGAG
261 GTGCCAAGGGAG
*
10277364 CAAAATAAATACTCTTCTTACCTTGCCACAACTTGAACCTTAGACCTCAAGAGAACT-CTACACA
1 CAAAATAAATACTCTTCTTACCTTGCCACAACTTGAACCTTAGACCTCAAGAAAACTAC-ACACA
10277428 CCACCTACCACTGCACCATAAGCTCTTTTTGTGACACATTTTACCCACAAATATTTATAAGGCCT
65 CCACCTACCACTGCACCATAAGCTCTTTTTGTGACACATTTTACCCACAAATATTTATAAGGCCT
* *
10277493 ACAAGCTAAAGCCAAGGTTCACTTAAAGGGAGAAAGTAAAATTGTTGCAAAAGCCCAGACATGAA
130 ACAAGCTAAAGCCAAGGTTCACTTAAAGGGAAAAACTAAAATTGTTGCAAAAGCCCAGACATGAA
*
10277558 CCCAGGCTTCTCAAACACTCCCAACCACACCCAAATCACTTAGCTAATAAAGCAAACATGAAATT
195 CCCAGGCTTCTCAAACACTCCCAACCACACCCAAATCACTTAGCCAATAAAGCAAACATGAAATT
10277623 TGTGCCA
260 TGTGCCA
10277630 CTTTCTTGCT
Statistics
Matches: 252, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
271 1 0.00
272 251 1.00
ACGTcount: A:0.37, C:0.28, G:0.12, T:0.23
Consensus pattern (272 bp):
CAAAATAAATACTCTTCTTACCTTGCCACAACTTGAACCTTAGACCTCAAGAAAACTACACACAC
CACCTACCACTGCACCATAAGCTCTTTTTGTGACACATTTTACCCACAAATATTTATAAGGCCTA
CAAGCTAAAGCCAAGGTTCACTTAAAGGGAAAAACTAAAATTGTTGCAAAAGCCCAGACATGAAC
CCAGGCTTCTCAAACACTCCCAACCACACCCAAATCACTTAGCCAATAAAGCAAACATGAAATTT
GTGCCAAGGGAG
Found at i:10286954 original size:30 final size:30
Alignment explanation
Indices: 10286897--10286955 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
10286887 ATTCCTTAAA
* *
10286897 AATATTTACAAAAAGAGGCATTTAATTTTT
1 AATATTTACAAAAAGAGGCACTGAATTTTT
*
10286927 AATATTTACAGAAAGA-GCAACTGAATTTT
1 AATATTTACAAAAAGAGGC-ACTGAATTTT
10286956 GAAAATAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 2 0.08
30 23 0.92
ACGTcount: A:0.44, C:0.08, G:0.12, T:0.36
Consensus pattern (30 bp):
AATATTTACAAAAAGAGGCACTGAATTTTT
Found at i:10308231 original size:26 final size:26
Alignment explanation
Indices: 10308195--10308255 Score: 113
Period size: 26 Copynumber: 2.3 Consensus size: 26
10308185 GGTGGCTGAG
10308195 TTGGTCTAGGTTGGGCATATGTGTTA
1 TTGGTCTAGGTTGGGCATATGTGTTA
10308221 TTGGTCTAGGTTGGGCATATGTGTTA
1 TTGGTCTAGGTTGGGCATATGTGTTA
10308247 TTGGGTCTA
1 TT-GGTCTA
10308256 TCCCCTTGGT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 28 0.82
27 6 0.18
ACGTcount: A:0.15, C:0.08, G:0.34, T:0.43
Consensus pattern (26 bp):
TTGGTCTAGGTTGGGCATATGTGTTA
Found at i:10314177 original size:22 final size:22
Alignment explanation
Indices: 10314151--10314194 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
10314141 GAAAATAATC
10314151 AAAATTAATAAAAATTAATTAT
1 AAAATTAATAAAAATTAATTAT
* *
10314173 AAAATTAATTAAAATTCATTAT
1 AAAATTAATAAAAATTAATTAT
10314195 GTTAATAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (22 bp):
AAAATTAATAAAAATTAATTAT
Found at i:10314178 original size:12 final size:11
Alignment explanation
Indices: 10314151--10314186 Score: 56
Period size: 12 Copynumber: 3.3 Consensus size: 11
10314141 GAAAATAATC
10314151 AAAATTAA-TA
1 AAAATTAATTA
10314161 AAAATTAATTA
1 AAAATTAATTA
10314172 TAAAATTAATTA
1 -AAAATTAATTA
10314184 AAA
1 AAA
10314187 TTCATTATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 8 0.33
11 5 0.21
12 11 0.46
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (11 bp):
AAAATTAATTA
Found at i:10314193 original size:10 final size:10
Alignment explanation
Indices: 10314142--10314193 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
10314132 AAATCTGTCG
*
10314142 AAAA-TAATC
1 AAAATTAATT
*
10314151 AAAATTAATA
1 AAAATTAATT
10314161 AAAATTAATTAT
1 AAAATTAA-T-T
10314173 AAAATTAATT
1 AAAATTAATT
*
10314183 AAAATTCATT
1 AAAATTAATT
10314193 A
1 A
10314194 TGTTAATAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
9 4 0.11
10 23 0.62
11 2 0.05
12 8 0.22
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.35
Consensus pattern (10 bp):
AAAATTAATT
Found at i:10322139 original size:29 final size:30
Alignment explanation
Indices: 10322092--10322148 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
10322082 TACTTCGGCT
* *
10322092 AACTTGAAAGAATTACTCACTTCCATAAGG
1 AACTTGAAAGAATCACTCACCTCCATAAGG
*
10322122 AACTTTAAA-AATCACTCACCTCCATAA
1 AACTTGAAAGAATCACTCACCTCCATAA
10322149 CTTAAGCATG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 16 0.67
30 8 0.33
ACGTcount: A:0.42, C:0.25, G:0.07, T:0.26
Consensus pattern (30 bp):
AACTTGAAAGAATCACTCACCTCCATAAGG
Found at i:10323463 original size:48 final size:48
Alignment explanation
Indices: 10323407--10323667 Score: 267
Period size: 48 Copynumber: 5.7 Consensus size: 48
10323397 TACCATGGTT
* *
10323407 ATACATGTAACATGGAGCTAAGTGGATATACCACGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* * * *
10323455 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* * *
10323503 ATTCAT-TAACGTGGTACTAAGTGGATATACCACG---------GTT-
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* * *
10323540 ATACGTGTAACGTGGTGCTAAGTGGATATTCCATGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* * * * * *
10323588 ATACATGTAACGTGGTGCTAATTGGATATGCAACGGTTACATATATCG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
*
10323636 ATTCAT-TAACGTGGTGCTAAGTGGATATACCA
1 ATACATGTAACGTGGTGCTAAGTGGATATACCA
10323668 TGGTTAAACA
Statistics
Matches: 173, Mismatches: 29, Indels: 23
0.77 0.13 0.10
Matches are distributed among these distances:
37 4 0.02
38 26 0.15
47 51 0.29
48 92 0.53
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (48 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
Found at i:10323561 original size:38 final size:38
Alignment explanation
Indices: 10323509--10323718 Score: 141
Period size: 38 Copynumber: 5.0 Consensus size: 38
10323499 ATCGATTCAT
* *
10323509 TAACGTGGTACTAAGTGGATATACCACGGTTATACGTG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTATACATG
* **
10323547 TAACGTGGTGCTAAGTGGATATTCCATGATTACACATATTGATACATG
1 TAACGTGGTGCTAAGTGG--A-T--AT-A--CCAC-GGTT-ATACATG
* * * *
10323595 TAACGTGGTGCTAATTGGATATGCAACGGTTACATATATCGATTCAT
1 TAACGTGGTGCTAAGTGGATATACCACGG-T---TATA-C-A-T--G
* *
10323642 TAACGTGGTGCTAAGTGGATATACCATGGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTATACATG
*
10323680 TAACGTGGTGCTAAGTGGATATGCCACGGTTATACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTATACATG
10323718 T
1 T
10323719 TAATTTGAAA
Statistics
Matches: 132, Mismatches: 21, Indels: 38
0.69 0.11 0.20
Matches are distributed among these distances:
38 53 0.40
40 5 0.04
41 2 0.02
42 4 0.03
43 9 0.07
44 2 0.02
45 2 0.02
46 5 0.04
47 27 0.20
48 23 0.17
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (38 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTATACATG
Found at i:10323566 original size:85 final size:86
Alignment explanation
Indices: 10323455--10323626 Score: 238
Period size: 85 Copynumber: 2.0 Consensus size: 86
10323445 ACACATATTG
* * *
10323455 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTCAT-TAACGTGGTA
1 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGATTACACATATCGATACATGTAACGTGGTA
*
10323519 CTAAGTGGATATACCACGGTT
66 CTAAGTGGATATACAACGGTT
* * * * *
10323540 ATACGTGTAACGTGGTGCTAAGTGGATATTCCATGATTACACATATTGATACATGTAACGTGGTG
1 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGATTACACATATCGATACATGTAACGTGGTA
* *
10323605 CTAATTGGATATGCAACGGTT
66 CTAAGTGGATATACAACGGTT
10323626 A
1 A
10323627 CATATATCGA
Statistics
Matches: 75, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
85 47 0.63
86 28 0.37
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (86 bp):
ATACATGTAACGTGGTGCTAAGTGGATATGCCACGATTACACATATCGATACATGTAACGTGGTA
CTAAGTGGATATACAACGGTT
Found at i:10323624 original size:133 final size:133
Alignment explanation
Indices: 10323381--10323716 Score: 555
Period size: 133 Copynumber: 2.5 Consensus size: 133
10323371 TGGAAAAACT
* *
10323381 TGGTGCTAAGTGGATATACCATGGTTATACATGTAACATGGAGCTAAGTGGATATACCACGATTA
1 TGGTGCTAAGTGGATATACCATGGTTATACATGTAACGTGGTGCTAAGTGGATATACCACGATTA
*
10323446 CACATATTGATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTCATTA
66 CACATATTGATACATGTAACGTGGTGCTAAGTGGATATGCAACGGTTACATATATCGATTCATTA
10323511 ACG
131 ACG
* * * * *
10323514 TGGTACTAAGTGGATATACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATATTCCATGATTA
1 TGGTGCTAAGTGGATATACCATGGTTATACATGTAACGTGGTGCTAAGTGGATATACCACGATTA
*
10323579 CACATATTGATACATGTAACGTGGTGCTAATTGGATATGCAACGGTTACATATATCGATTCATTA
66 CACATATTGATACATGTAACGTGGTGCTAAGTGGATATGCAACGGTTACATATATCGATTCATTA
10323644 ACG
131 ACG
* * *
10323647 TGGTGCTAAGTGGATATACCATGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
1 TGGTGCTAAGTGGATATACCATGGTTATACATGTAACGTGGTGCTAAGTGGATATACCACGATTA
*
10323712 TACAT
66 CACAT
10323717 GTTAATTTGA
Statistics
Matches: 186, Mismatches: 17, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
133 186 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (133 bp):
TGGTGCTAAGTGGATATACCATGGTTATACATGTAACGTGGTGCTAAGTGGATATACCACGATTA
CACATATTGATACATGTAACGTGGTGCTAAGTGGATATGCAACGGTTACATATATCGATTCATTA
ACG
Found at i:10329689 original size:40 final size:40
Alignment explanation
Indices: 10329450--10329675 Score: 321
Period size: 40 Copynumber: 5.7 Consensus size: 40
10329440 TTGAATGATG
* * * * *
10329450 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** *
10329490 TCCGGACTAAGGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
10329530 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
10329570 TCCGGGTTAAGGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
10329610 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
10329651 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
10329676 AACGAGTAGC
Statistics
Matches: 171, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
40 162 0.95
41 9 0.05
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:10331829 original size:38 final size:38
Alignment explanation
Indices: 10331778--10331969 Score: 159
Period size: 38 Copynumber: 4.6 Consensus size: 38
10331768 TGGAAAAACA
10331778 TGGTGCTAAGTGGATATACCACGGTTATACGTGTAACG
1 TGGTGCTAAGTGGATATACCACGGTTATACGTGTAACG
** *
10331816 TGGTGCTAAGTGGATATACTACGATTACACATATTGATACATGTAACG
1 TGGTGCTAAGTGG--ATA-TAC-----CAC-GGTT-ATACGTGTAACG
* *
10331864 TGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTCCTTAACG
1 TGGTGCTAAGTGGATATACCACGG-T---TATA-CG--T--GTAACG
*
10331911 TGGTACTAAGTGGATATACCACGGTTATACGTGTAACG
1 TGGTGCTAAGTGGATATACCACGGTTATACGTGTAACG
10331949 TGGTGCTAAGTGGATATACCA
1 TGGTGCTAAGTGGATATACCA
10331970 TGATTACACA
Statistics
Matches: 123, Mismatches: 12, Indels: 38
0.71 0.07 0.22
Matches are distributed among these distances:
38 38 0.31
40 8 0.07
41 3 0.02
42 5 0.04
43 6 0.05
45 3 0.02
46 7 0.06
47 29 0.24
48 24 0.20
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (38 bp):
TGGTGCTAAGTGGATATACCACGGTTATACGTGTAACG
Done.