Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 297 of 313
Found at i:91275723 original size:18 final size:19
Alignment explanation
Indices: 91275696--91275746 Score: 59
Period size: 21 Copynumber: 2.6 Consensus size: 19
91275686 GTCGAAAATT
91275696 GTATCGATACTTACT-CAA
1 GTATCGATACTTACTACAA
* *
91275714 GTATCAATACATTTCTAACAA
1 GTATCGATAC-TTACT-ACAA
91275735 GTATCGATACTT
1 GTATCGATACTT
91275747 TTGTATTTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 9 0.33
19 4 0.15
20 2 0.07
21 12 0.44
ACGTcount: A:0.35, C:0.20, G:0.10, T:0.35
Consensus pattern (19 bp):
GTATCGATACTTACTACAA
Found at i:91282509 original size:33 final size:33
Alignment explanation
Indices: 91282467--91282533 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
91282457 GTGTTTTGGT
91282467 ACAAGTAAACTTAAACCATTTATACACAAAATG
1 ACAAGTAAACTTAAACCATTTATACACAAAATG
* *
91282500 ACAAGTAAACTTAAACCATTTGTGCACAAAATG
1 ACAAGTAAACTTAAACCATTTATACACAAAATG
91282533 A
1 A
91282534 AGTTTGTGTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.49, C:0.18, G:0.09, T:0.24
Consensus pattern (33 bp):
ACAAGTAAACTTAAACCATTTATACACAAAATG
Found at i:91284020 original size:14 final size:15
Alignment explanation
Indices: 91284001--91284030 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
91283991 TGGAAAATTT
91284001 AATAATTTTAA-AAA
1 AATAATTTTAATAAA
91284015 AATAATTTTAATAAA
1 AATAATTTTAATAAA
91284030 A
1 A
91284031 GTTCAATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
AATAATTTTAATAAA
Found at i:91286461 original size:13 final size:13
Alignment explanation
Indices: 91286443--91286469 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
91286433 CCACCTTAGA
91286443 AATCCAACCATAT
1 AATCCAACCATAT
91286456 AATCCAACCATAT
1 AATCCAACCATAT
91286469 A
1 A
91286470 CTTTTATTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.30, G:0.00, T:0.22
Consensus pattern (13 bp):
AATCCAACCATAT
Found at i:91287350 original size:16 final size:16
Alignment explanation
Indices: 91287329--91287374 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
91287319 TTATTAAATT
91287329 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
91287345 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
91287360 AT-TATGTTAAATTAT
1 ATATAT-TTTAATTAT
91287375 CTATATTATG
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.44
16 12 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:91287383 original size:107 final size:108
Alignment explanation
Indices: 91287269--91287479 Score: 388
Period size: 107 Copynumber: 2.0 Consensus size: 108
91287259 TATAGTATTA
* * *
91287269 TATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATA
1 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAAAATTTTATTAAATTATATA
91287334 TTTTAATTATAATATATTTAATAATAATTATG-TTAAATTATC
66 TTTTAATTATAATATATTTAATAATAATTATGTTTAAATTATC
91287376 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAAAATTTTATTAAATTATATA
1 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAAAATTTTATTAAATTATATA
91287441 TTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
66 TTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
91287480 ATGATTAAAT
Statistics
Matches: 100, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
107 94 0.94
108 6 0.06
ACGTcount: A:0.44, C:0.01, G:0.05, T:0.49
Consensus pattern (108 bp):
TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAAAATTTTATTAAATTATATA
TTTTAATTATAATATATTTAATAATAATTATGTTTAAATTATC
Found at i:91287457 original size:16 final size:16
Alignment explanation
Indices: 91287436--91287477 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
91287426 TTATTAAATT
*
91287436 ATATATTTTAATTATA
1 ATATATTTTAATAATA
91287452 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
91287467 AT-TATGTTTAA
1 ATATAT-TTTAA
91287478 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:91287462 original size:15 final size:15
Alignment explanation
Indices: 91287427--91287468 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
91287417 TTAAAAATTT
*
91287427 TATTAAATTAT-ATA
1 TATTTAATTATAATA
91287441 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
91287455 TATTTAATAATAAT
1 TATTTAATTATAAT
91287469 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:91287703 original size:45 final size:44
Alignment explanation
Indices: 91287603--91287712 Score: 133
Period size: 45 Copynumber: 2.6 Consensus size: 44
91287593 TTTTCCATTA
91287603 TGCTATTACACCTCTATT-C----CATTCAACCAAACATAAGAT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACATAAGAT
* * *
91287642 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGT-TGATT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACA-TAAGA-T
91287687 TGCTATTACACCTCTATTCCATTACA
1 TGCTATTACACCTCTATTCCATTACA
91287713 CCTCTAATCC
Statistics
Matches: 59, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
39 16 0.27
40 1 0.02
44 16 0.27
45 26 0.44
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.35
Consensus pattern (44 bp):
TGCTATTACACCTCTATTCCATTACATTCAACCAAACATAAGAT
Found at i:91287712 original size:16 final size:16
Alignment explanation
Indices: 91287693--91287760 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
91287683 GATTTGCTAT
* *
91287693 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
91287709 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
91287725 TACACCTCCAATCCAA
1 TACACCTCTAATCCAA
91287741 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
91287757 TACA
1 TACA
91287761 GCGAACCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.35, C:0.38, G:0.00, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:91309596 original size:15 final size:15
Alignment explanation
Indices: 91309576--91309605 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
91309566 CTTAATTTAC
91309576 CCACTTTTTTAAGAA
1 CCACTTTTTTAAGAA
91309591 CCACTTTTTTAAGAA
1 CCACTTTTTTAAGAA
91309606 TGATTATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.20, G:0.07, T:0.40
Consensus pattern (15 bp):
CCACTTTTTTAAGAA
Found at i:91313812 original size:11 final size:11
Alignment explanation
Indices: 91313787--91313821 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
91313777 GGTAAAACGG
91313787 TAAATAAATAAT
1 TAAATAAA-AAT
*
91313799 TAAATATAAAT
1 TAAATAAAAAT
91313810 TAAATAAAAAT
1 TAAATAAAAAT
91313821 T
1 T
91313822 TAGTTGTCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 14 0.67
12 7 0.33
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (11 bp):
TAAATAAAAAT
Found at i:91315091 original size:20 final size:20
Alignment explanation
Indices: 91315054--91315092 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
91315044 TTGTACGGGA
* * *
91315054 TTGCACTTCGGTGTCTCTAT
1 TTGCACTTAGATGCCTCTAT
91315074 TTGCACTTAGATGCCTCTA
1 TTGCACTTAGATGCCTCTA
91315093 ATTACACAGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.15, C:0.26, G:0.18, T:0.41
Consensus pattern (20 bp):
TTGCACTTAGATGCCTCTAT
Found at i:91317458 original size:27 final size:29
Alignment explanation
Indices: 91317427--91317501 Score: 77
Period size: 27 Copynumber: 2.7 Consensus size: 29
91317417 AAGATAAATG
91317427 TTAAATTAAATTTAATATTAAATC-T-TA
1 TTAAATTAAATTTAATATTAAATCTTGTA
* ** * *
91317454 TTAAAAT-AATAGAATGTT-TATCTTGTA
1 TTAAATTAAATTTAATATTAAATCTTGTA
91317481 TTAAATTAAATTTAATATTAA
1 TTAAATTAAATTTAATATTAA
91317502 GATAATCACT
Statistics
Matches: 34, Mismatches: 10, Indels: 6
0.68 0.20 0.12
Matches are distributed among these distances:
25 3 0.09
26 9 0.26
27 14 0.41
28 8 0.24
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.47
Consensus pattern (29 bp):
TTAAATTAAATTTAATATTAAATCTTGTA
Found at i:91343054 original size:29 final size:29
Alignment explanation
Indices: 91343021--91343094 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
91343011 GTTGTGAGAT
* *
91343021 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
91343050 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
91343079 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
91343095 CGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:91347747 original size:10 final size:10
Alignment explanation
Indices: 91347697--91347748 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
91347687 AAATCTGTCG
*
91347697 AAAA-TAATC
1 AAAATTAATT
*
91347706 AAAATTAATC
1 AAAATTAATT
91347716 AAAATTAAATAT
1 AAAATT-AAT-T
*
91347728 ATAATTAATT
1 AAAATTAATT
91347738 AAAATTAATT
1 AAAATTAATT
91347748 A
1 A
91347749 TGTTAATAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
9 4 0.11
10 22 0.59
11 6 0.16
12 5 0.14
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.35
Consensus pattern (10 bp):
AAAATTAATT
Found at i:91350056 original size:19 final size:19
Alignment explanation
Indices: 91350021--91350058 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
91350011 GACATACGAG
*
91350021 TTAATATTTTATTATTTAT
1 TTAATATTTTATAATTTAT
91350040 TTAATA-TTTATGAATTTAT
1 TTAATATTTTAT-AATTTAT
91350059 ATTAGGGTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (19 bp):
TTAATATTTTATAATTTAT
Found at i:91355964 original size:3 final size:3
Alignment explanation
Indices: 91355956--91355993 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
91355946 GGTATTGACT
91355956 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
91355994 GACAGGGGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:91360705 original size:24 final size:23
Alignment explanation
Indices: 91360678--91360728 Score: 57
Period size: 24 Copynumber: 2.2 Consensus size: 23
91360668 TTTTTTTATG
* *
91360678 TTTCCTTTCCTTTTCTTTTATTTT
1 TTTCCATTCCTTTTCTTTT-TCTT
* *
91360702 TTTCGATTCTTTTTCTTTTTCTT
1 TTTCCATTCCTTTTCTTTTTCTT
91360725 TTTC
1 TTTC
91360729 AGCAATTCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
23 7 0.30
24 16 0.70
ACGTcount: A:0.04, C:0.20, G:0.02, T:0.75
Consensus pattern (23 bp):
TTTCCATTCCTTTTCTTTTTCTT
Found at i:91370402 original size:30 final size:29
Alignment explanation
Indices: 91370368--91370437 Score: 79
Period size: 30 Copynumber: 2.4 Consensus size: 29
91370358 AATAAAGTTT
* *
91370368 AAAATATAAAGACAAAAT-GATATAAAAAG
1 AAAA-ATAAAAACAAAATAAATATAAAAAG
* *
91370397 AAAAATAAAAATAAAATAAAATATAAAAAT
1 AAAAATAAAAACAAAAT-AAATATAAAAAG
91370427 AAAAATAAAAA
1 AAAAATAAAAA
91370438 TAACTTGCCT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
28 11 0.31
29 4 0.11
30 20 0.57
ACGTcount: A:0.77, C:0.01, G:0.04, T:0.17
Consensus pattern (29 bp):
AAAAATAAAAACAAAATAAATATAAAAAG
Found at i:91370406 original size:6 final size:6
Alignment explanation
Indices: 91370389--91370440 Score: 79
Period size: 6 Copynumber: 8.7 Consensus size: 6
91370379 ACAAAATGAT
*
91370389 ATAAAA AGAAAA ATAAAA AT-AAA ATAAAA TATAAAA ATAAAA ATAAAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA -ATAAAA ATAAAA ATAAAA
91370437 ATAA
1 ATAA
91370441 CTTGCCTCAA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
5 5 0.12
6 31 0.74
7 6 0.14
ACGTcount: A:0.81, C:0.00, G:0.02, T:0.17
Consensus pattern (6 bp):
ATAAAA
Found at i:91375394 original size:30 final size:30
Alignment explanation
Indices: 91375353--91375410 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
91375343 CACGGGCTGC
*
91375353 CACATGGGCGTGTG-GCCAGCCCGTGTGGCT
1 CACACGGGCGTGTGCGCCA-CCCGTGTGGCT
*
91375383 CACACGGGCGTGTGCTCCACCCGTGTGG
1 CACACGGGCGTGTGCGCCACCCGTGTGG
91375411 AATCTGTCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 22 0.88
31 3 0.12
ACGTcount: A:0.10, C:0.33, G:0.38, T:0.19
Consensus pattern (30 bp):
CACACGGGCGTGTGCGCCACCCGTGTGGCT
Found at i:91375766 original size:50 final size:50
Alignment explanation
Indices: 91375701--91375795 Score: 163
Period size: 50 Copynumber: 1.9 Consensus size: 50
91375691 GTCACACGAG
91375701 TGAGACACACAGGCATGTGTCCAGGCTGTGTAACTCACTAACTTTGGAAT
1 TGAGACACACAGGCATGTGTCCAGGCTGTGTAACTCACTAACTTTGGAAT
* * *
91375751 TGAGTCACACGGGCATGTGTCTAGGCTGTGTAACTCACTAACTTT
1 TGAGACACACAGGCATGTGTCCAGGCTGTGTAACTCACTAACTTT
91375796 ATATTTAAGA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 42 1.00
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.28
Consensus pattern (50 bp):
TGAGACACACAGGCATGTGTCCAGGCTGTGTAACTCACTAACTTTGGAAT
Found at i:91375811 original size:50 final size:49
Alignment explanation
Indices: 91375706--91375830 Score: 144
Period size: 50 Copynumber: 2.5 Consensus size: 49
91375696 ACGAGTGAGA
* * *
91375706 CACACAGGCATGTGTCCAGGCTGTGTAACTCACTAACTTTGGAATTGAGT
1 CACACGGGCATGTGT-CAGGCTGTGTAACTCACTAACTTTAGAATTAAGT
* *
91375756 CACACGGGCATGTGTCTAGGCTGTGTAACTCACTAACTTTATATTTAAGAT
1 CACACGGGCATGTGTC-AGGCTGTGTAACTCACTAACTTTAGAATTAAG-T
* * *
91375807 -ACACGGACGTGTGTCAGGCCGTGT
1 CACACGGGCATGTGTCAGGCTGTGT
91375831 GGAGCCACAT
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
49 9 0.14
50 55 0.85
51 1 0.02
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.29
Consensus pattern (49 bp):
CACACGGGCATGTGTCAGGCTGTGTAACTCACTAACTTTAGAATTAAGT
Found at i:91384830 original size:18 final size:18
Alignment explanation
Indices: 91384807--91384851 Score: 90
Period size: 18 Copynumber: 2.5 Consensus size: 18
91384797 ACAAAATCAA
91384807 GCTCAGGCTGCTGAGGAT
1 GCTCAGGCTGCTGAGGAT
91384825 GCTCAGGCTGCTGAGGAT
1 GCTCAGGCTGCTGAGGAT
91384843 GCTCAGGCT
1 GCTCAGGCT
91384852 TAAGAGGAGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.16, C:0.24, G:0.38, T:0.22
Consensus pattern (18 bp):
GCTCAGGCTGCTGAGGAT
Found at i:91384836 original size:9 final size:9
Alignment explanation
Indices: 91384807--91384851 Score: 54
Period size: 9 Copynumber: 5.0 Consensus size: 9
91384797 ACAAAATCAA
91384807 GCTCAGGCT
1 GCTCAGGCT
* *
91384816 GCTGAGGAT
1 GCTCAGGCT
91384825 GCTCAGGCT
1 GCTCAGGCT
* *
91384834 GCTGAGGAT
1 GCTCAGGCT
91384843 GCTCAGGCT
1 GCTCAGGCT
91384852 TAAGAGGAGC
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.16, C:0.24, G:0.38, T:0.22
Consensus pattern (9 bp):
GCTCAGGCT
Found at i:91384858 original size:18 final size:18
Alignment explanation
Indices: 91384807--91384859 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
91384797 ACAAAATCAA
**
91384807 GCTCAGGCTGCTGAGGAT
1 GCTCAGGCTGAAGAGGAT
**
91384825 GCTCAGGCTGCTGAGGAT
1 GCTCAGGCTGAAGAGGAT
*
91384843 GCTCAGGCTTAAGAGGA
1 GCTCAGGCTGAAGAGGA
91384860 GCATGTTTTC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.21, C:0.21, G:0.38, T:0.21
Consensus pattern (18 bp):
GCTCAGGCTGAAGAGGAT
Found at i:91394242 original size:14 final size:12
Alignment explanation
Indices: 91394223--91394272 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
91394213 TAACTAAAGT
91394223 GAATAAAAGAAACA
1 GAAT-AAAGAAA-A
91394237 GAATAAAGAAAA
1 GAATAAAGAAAA
*
91394249 GAA-ACA-AAAA
1 GAATAAAGAAAA
*
91394259 GAATAGAGAAAA
1 GAATAAAGAAAA
91394271 GA
1 GA
91394273 GAACAGAAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
10 7 0.22
11 4 0.12
12 10 0.31
13 7 0.22
14 4 0.12
ACGTcount: A:0.72, C:0.04, G:0.18, T:0.06
Consensus pattern (12 bp):
GAATAAAGAAAA
Found at i:91394262 original size:22 final size:23
Alignment explanation
Indices: 91394236--91394282 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
91394226 TAAAAGAAAC
91394236 AGAATAAAGAAAAGA-AACAAAA
1 AGAATAAAGAAAAGAGAACAAAA
* *
91394258 AGAATAGAGAAAAGAGAACAGAA
1 AGAATAAAGAAAAGAGAACAAAA
91394281 AG
1 AG
91394283 TATTCGAGCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 14 0.64
23 8 0.36
ACGTcount: A:0.70, C:0.04, G:0.21, T:0.04
Consensus pattern (23 bp):
AGAATAAAGAAAAGAGAACAAAA
Found at i:91395799 original size:23 final size:23
Alignment explanation
Indices: 91395769--91395855 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
91395759 GCTTTACTGA
* *
91395769 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTCATGTGTCGTATT
*
91395792 TCAGGCACCTCGTGTGTCGTA--
1 TCAGGCACCTCATGTGTCGTATT
*
91395813 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACCTCATGTGTCGTATT
* *
91395835 T-AGGCACTTTATGTGTCGTAT
1 TCAGGCACCTCATGTGTCGTAT
91395856 ACTAATCAGG
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
21 35 0.64
22 2 0.04
23 18 0.33
ACGTcount: A:0.15, C:0.22, G:0.25, T:0.38
Consensus pattern (23 bp):
TCAGGCACCTCATGTGTCGTATT
Found at i:91402113 original size:14 final size:12
Alignment explanation
Indices: 91402094--91402143 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
91402084 TAACTAAAGT
91402094 GAATAAAAGAAACA
1 GAAT-AAAGAAA-A
91402108 GAATAAAGAAAA
1 GAATAAAGAAAA
*
91402120 GAA-ACA-AAAA
1 GAATAAAGAAAA
*
91402130 GAATAGAGAAAA
1 GAATAAAGAAAA
91402142 GA
1 GA
91402144 GAACAGAAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
10 7 0.22
11 4 0.12
12 10 0.31
13 7 0.22
14 4 0.12
ACGTcount: A:0.72, C:0.04, G:0.18, T:0.06
Consensus pattern (12 bp):
GAATAAAGAAAA
Found at i:91402133 original size:22 final size:23
Alignment explanation
Indices: 91402107--91402153 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
91402097 TAAAAGAAAC
91402107 AGAATAAAGAAAAGA-AACAAAA
1 AGAATAAAGAAAAGAGAACAAAA
* *
91402129 AGAATAGAGAAAAGAGAACAGAA
1 AGAATAAAGAAAAGAGAACAAAA
91402152 AG
1 AG
91402154 CATTCGAGCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 14 0.64
23 8 0.36
ACGTcount: A:0.70, C:0.04, G:0.21, T:0.04
Consensus pattern (23 bp):
AGAATAAAGAAAAGAGAACAAAA
Found at i:91403670 original size:23 final size:23
Alignment explanation
Indices: 91403640--91403712 Score: 82
Period size: 21 Copynumber: 3.3 Consensus size: 23
91403630 GCTTTACTGA
* *
91403640 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTCATGTGTCGTATT
*
91403663 TCAGGCACCTCGTGTGTCGTA--
1 TCAGGCACCTCATGTGTCGTATT
*
91403684 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACCTCATGTGTCGTATT
91403706 T-AGGCAC
1 TCAGGCAC
91403713 TTTATGCGTC
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
21 26 0.58
22 1 0.02
23 18 0.40
ACGTcount: A:0.15, C:0.25, G:0.26, T:0.34
Consensus pattern (23 bp):
TCAGGCACCTCATGTGTCGTATT
Found at i:91403687 original size:21 final size:21
Alignment explanation
Indices: 91403652--91403712 Score: 86
Period size: 21 Copynumber: 2.8 Consensus size: 21
91403642 AGGCACTTTA
91403652 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTA--TCAGGCACCTCG
91403675 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
* *
91403696 TGTGTCGTTTTAGGCAC
1 TGTGTCGTATCAGGCAC
91403713 TTTATGCGTC
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
21 27 0.75
23 9 0.25
ACGTcount: A:0.13, C:0.25, G:0.28, T:0.34
Consensus pattern (21 bp):
TGTGTCGTATCAGGCACCTCG
Found at i:91407758 original size:18 final size:18
Alignment explanation
Indices: 91407723--91407764 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
91407713 TCCACCTTTC
* *
91407723 ATATATCCTCCTCCTCAA
1 ATATATCCTCCACATCAA
91407741 ATATATCCTCCACATCAA
1 ATATATCCTCCACATCAA
*
91407759 TTATAT
1 ATATAT
91407765 GAAAACCAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.33, C:0.31, G:0.00, T:0.36
Consensus pattern (18 bp):
ATATATCCTCCACATCAA
Found at i:91413454 original size:7 final size:6
Alignment explanation
Indices: 91413425--91413456 Score: 55
Period size: 6 Copynumber: 5.2 Consensus size: 6
91413415 TTCAAGTTAT
91413425 TTAAAA TTAAAA TTAAAA TTAAATA TTAAAA T
1 TTAAAA TTAAAA TTAAAA TTAAA-A TTAAAA T
91413457 CAATTTTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 19 0.76
7 6 0.24
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (6 bp):
TTAAAA
Found at i:91415825 original size:6 final size:6
Alignment explanation
Indices: 91415814--91415849 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
91415804 AATTATTTTA
91415814 AATTAT AATTAT AATTAT AATTAT AATTAT AATTAT
1 AATTAT AATTAT AATTAT AATTAT AATTAT AATTAT
91415850 CACAATATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
AATTAT
Found at i:91418023 original size:17 final size:18
Alignment explanation
Indices: 91418001--91418043 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
91417991 TGCAATTATC
*
91418001 ATAATTTTTATTAAA-TT
1 ATAATTATTATTAAATTT
*
91418018 ATAATTATTGTTAAATTT
1 ATAATTATTATTAAATTT
91418036 ATAATTAT
1 ATAATTAT
91418044 CATATTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 13 0.57
18 10 0.43
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (18 bp):
ATAATTATTATTAAATTT
Found at i:91418026 original size:44 final size:44
Alignment explanation
Indices: 91417970--91418053 Score: 114
Period size: 44 Copynumber: 1.9 Consensus size: 44
91417960 TAGTAATTTT
* * *
91417970 AATTTTAATTATTTTTAAATGTGCAATTATCATAATTTTTATTA
1 AATTATAATTATTGTTAAATGTACAATTATCATAATTTTTATTA
* * *
91418014 AATTATAATTATTGTTAAATTTATAATTATCATATTTTTT
1 AATTATAATTATTGTTAAATGTACAATTATCATAATTTTT
91418054 TATGTATAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 34 1.00
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.56
Consensus pattern (44 bp):
AATTATAATTATTGTTAAATGTACAATTATCATAATTTTTATTA
Found at i:91425052 original size:18 final size:18
Alignment explanation
Indices: 91425025--91425117 Score: 159
Period size: 18 Copynumber: 5.2 Consensus size: 18
91425015 TACGACCGTT
91425025 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
91425043 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
91425061 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
91425079 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
91425097 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
91425115 TAC
1 TAC
91425118 AGTAGTTGGG
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 70 1.00
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:91425072 original size:36 final size:36
Alignment explanation
Indices: 91425025--91425117 Score: 177
Period size: 36 Copynumber: 2.6 Consensus size: 36
91425015 TACGACCGTT
91425025 TACGGTACTATTCACGTATACGGCACTATTCACGTA
1 TACGGTACTATTCACGTATACGGCACTATTCACGTA
91425061 TACGGTACTATTCACGTATACGGCACTATTCACGTA
1 TACGGTACTATTCACGTATACGGCACTATTCACGTA
*
91425097 TACGGTACTGTTCACGTATAC
1 TACGGTACTATTCACGTATAC
91425118 AGTAGTTGGG
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 56 1.00
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (36 bp):
TACGGTACTATTCACGTATACGGCACTATTCACGTA
Found at i:91429757 original size:18 final size:18
Alignment explanation
Indices: 91429734--91429805 Score: 126
Period size: 18 Copynumber: 4.0 Consensus size: 18
91429724 GACCGTTTAT
91429734 GGTACTATTCACGTATAC
1 GGTACTATTCACGTATAC
91429752 GGTACTATTCACGTATAC
1 GGTACTATTCACGTATAC
*
91429770 GGCACTATTCACGTATAC
1 GGTACTATTCACGTATAC
*
91429788 GGTACTGTTCACGTATAC
1 GGTACTATTCACGTATAC
91429806 AGTAGTTGGG
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 51 1.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (18 bp):
GGTACTATTCACGTATAC
Found at i:91434442 original size:18 final size:18
Alignment explanation
Indices: 91434419--91434511 Score: 141
Period size: 18 Copynumber: 5.2 Consensus size: 18
91434409 TACGACCGTT
91434419 TACGGCACTATTCACGTA
1 TACGGCACTATTCACGTA
91434437 TACGGCACTATTCACGTA
1 TACGGCACTATTCACGTA
* *
91434455 TACAGTACTATTCACGTA
1 TACGGCACTATTCACGTA
91434473 TACGGCACTATTCACGTA
1 TACGGCACTATTCACGTA
* * *
91434491 TACAGTACTGTTCACGTA
1 TACGGCACTATTCACGTA
91434509 TAC
1 TAC
91434512 AGTAGTTGGG
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 68 1.00
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (18 bp):
TACGGCACTATTCACGTA
Found at i:91434472 original size:36 final size:36
Alignment explanation
Indices: 91434425--91434511 Score: 165
Period size: 36 Copynumber: 2.4 Consensus size: 36
91434415 CGTTTACGGC
91434425 ACTATTCACGTATACGGCACTATTCACGTATACAGT
1 ACTATTCACGTATACGGCACTATTCACGTATACAGT
91434461 ACTATTCACGTATACGGCACTATTCACGTATACAGT
1 ACTATTCACGTATACGGCACTATTCACGTATACAGT
*
91434497 ACTGTTCACGTATAC
1 ACTATTCACGTATAC
91434512 AGTAGTTGGG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 50 1.00
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.31
Consensus pattern (36 bp):
ACTATTCACGTATACGGCACTATTCACGTATACAGT
Found at i:91439817 original size:49 final size:49
Alignment explanation
Indices: 91439745--91439842 Score: 160
Period size: 49 Copynumber: 2.0 Consensus size: 49
91439735 AGCAATGGAA
* * *
91439745 GATAAATATCGAGTGTGCCCAAGAATTTACGGAACTGGGAGCCAAGGAT
1 GATAAAAATCGAGTATGCCCAAGAACTTACGGAACTGGGAGCCAAGGAT
*
91439794 GATAAAAATCGAGTATGCCCAAGAACTTACGGAACTGGGAGTCAAGGAT
1 GATAAAAATCGAGTATGCCCAAGAACTTACGGAACTGGGAGCCAAGGAT
91439843 TGCGTGAAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.37, C:0.16, G:0.28, T:0.19
Consensus pattern (49 bp):
GATAAAAATCGAGTATGCCCAAGAACTTACGGAACTGGGAGCCAAGGAT
Found at i:91440911 original size:41 final size:41
Alignment explanation
Indices: 91440861--91440998 Score: 213
Period size: 41 Copynumber: 3.4 Consensus size: 41
91440851 CATTTTACCA
* * *
91440861 AAAATGCCGCTAAAAACCAGAGCATTAGCCGCACTTTCGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGGT
91440902 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGGT
* * * *
91440943 AAAACGCCGCTAAAAACTAGATCATTAGTGGCGCTTTTGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGGT
91440984 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
91440999 TTTATATAAC
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 90 1.00
ACGTcount: A:0.35, C:0.25, G:0.21, T:0.20
Consensus pattern (41 bp):
AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGGT
Found at i:91441073 original size:38 final size:39
Alignment explanation
Indices: 91441031--91441107 Score: 111
Period size: 38 Copynumber: 2.0 Consensus size: 39
91441021 TAAACCCCCA
* *
91441031 AAAAAATCATAAACACTAATCTATAACCCCT-AAACCCT
1 AAAAAACCATAAACACTAAACTATAACCCCTAAAACCCT
* *
91441069 AAAAAACCCTAAACACTAAACTATAACCCTTAAAACCCT
1 AAAAAACCATAAACACTAAACTATAACCCCTAAAACCCT
91441108 GAACCCCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
38 27 0.79
39 7 0.21
ACGTcount: A:0.51, C:0.30, G:0.00, T:0.19
Consensus pattern (39 bp):
AAAAAACCATAAACACTAAACTATAACCCCTAAAACCCT
Found at i:91442041 original size:8 final size:8
Alignment explanation
Indices: 91442030--91442076 Score: 51
Period size: 8 Copynumber: 6.0 Consensus size: 8
91442020 TTTAAAATTT
91442030 AAAATTAA
1 AAAATTAA
*
91442038 AAAAATAA
1 AAAATTAA
*
91442046 AAAAATAA
1 AAAATTAA
91442054 AAAA-TAA
1 AAAATTAA
*
91442061 AAATTTAA
1 AAAATTAA
*
91442069 AAATTTAA
1 AAAATTAA
91442077 TATTTAATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
7 6 0.17
8 30 0.83
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (8 bp):
AAAATTAA
Found at i:91442041 original size:15 final size:15
Alignment explanation
Indices: 91442023--91442073 Score: 50
Period size: 14 Copynumber: 3.4 Consensus size: 15
91442013 AAAAAAATTT
*
91442023 AAAATTTAAAATTAAA
1 AAAATTAAAAATT-AA
* *
91442039 AAAATAAAAAAATAA
1 AAAATTAAAAATTAA
*
91442054 AAAA-TAAAAATTTA
1 AAAATTAAAAATTAA
91442068 AAAATT
1 AAAATT
91442074 TAATATTTAA
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
14 11 0.39
15 7 0.25
16 10 0.36
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (15 bp):
AAAATTAAAAATTAA
Found at i:91442042 original size:16 final size:16
Alignment explanation
Indices: 91442030--91442063 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
91442020 TTTAAAATTT
*
91442030 AAAATTAAAAAAATAA
1 AAAAATAAAAAAATAA
91442046 AAAAAT-AAAAAATAA
1 AAAAATAAAAAAATAA
91442061 AAA
1 AAA
91442064 TTTAAAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (16 bp):
AAAAATAAAAAAATAA
Found at i:91444658 original size:2 final size:2
Alignment explanation
Indices: 91444651--91444675 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
91444641 GGTTTTGTTT
91444651 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
91444676 ATTTATTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:91453834 original size:32 final size:32
Alignment explanation
Indices: 91453793--91453874 Score: 164
Period size: 32 Copynumber: 2.6 Consensus size: 32
91453783 TTTAAAGCCA
91453793 AATCATATTCGACTAAGCTGACTTATTAGCTC
1 AATCATATTCGACTAAGCTGACTTATTAGCTC
91453825 AATCATATTCGACTAAGCTGACTTATTAGCTC
1 AATCATATTCGACTAAGCTGACTTATTAGCTC
91453857 AATCATATTCGACTAAGC
1 AATCATATTCGACTAAGC
91453875 AAATTATATT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 50 1.00
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (32 bp):
AATCATATTCGACTAAGCTGACTTATTAGCTC
Found at i:91457508 original size:18 final size:18
Alignment explanation
Indices: 91457485--91457522 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
91457475 CTCAACTTAG
91457485 AAGGCAATCTAGTTATGT
1 AAGGCAATCTAGTTATGT
91457503 AAGGCAATCTAGTTATGT
1 AAGGCAATCTAGTTATGT
91457521 AA
1 AA
91457523 TGTTGGGCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.32
Consensus pattern (18 bp):
AAGGCAATCTAGTTATGT
Found at i:91463296 original size:36 final size:36
Alignment explanation
Indices: 91463245--91463313 Score: 93
Period size: 36 Copynumber: 1.9 Consensus size: 36
91463235 ACAATTATTT
* * *
91463245 TTCAGTAATAGTCAGTTATTCGGTAACAATCAATTA
1 TTCAATAATAATCAGTTATTCAGTAACAATCAATTA
* *
91463281 TTCAATAATAATCAGTTGTTCAGTATCAATCAA
1 TTCAATAATAATCAGTTATTCAGTAACAATCAA
91463314 CTGATCGGTT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 28 1.00
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (36 bp):
TTCAATAATAATCAGTTATTCAGTAACAATCAATTA
Found at i:91463348 original size:18 final size:18
Alignment explanation
Indices: 91463322--91463392 Score: 54
Period size: 18 Copynumber: 3.9 Consensus size: 18
91463312 AACTGATCGG
*
91463322 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
* *
91463340 TTATTCAGTAAAAATCAGA
1 TTATTCAGTAACAGTCA-A
* * *
91463359 -TATACAGTAACAATTAAA
1 TTATTCAGTAAC-AGTCAA
*
91463377 TTATTTAGTAACAGTC
1 TTATTCAGTAACAGTC
91463393 GATCTTTCCA
Statistics
Matches: 39, Mismatches: 11, Indels: 6
0.70 0.20 0.11
Matches are distributed among these distances:
18 26 0.67
19 13 0.33
ACGTcount: A:0.44, C:0.14, G:0.10, T:0.32
Consensus pattern (18 bp):
TTATTCAGTAACAGTCAA
Found at i:91463594 original size:53 final size:53
Alignment explanation
Indices: 91463510--91463634 Score: 187
Period size: 53 Copynumber: 2.4 Consensus size: 53
91463500 CCAGAACAGT
* * *
91463510 AACAGTAACAGTAGCAGTACGGTACATAGAGTACCTCATCGGAACAAATCCGA
1 AACAGTAACAGTAACAGTACAGTACACAGAGTACCTCATCGGAACAAATCCGA
* * *
91463563 AACTGTAACAGTAACATTACAGTACACAGAGTACCTCATCGGAACAAATTCGA
1 AACAGTAACAGTAACAGTACAGTACACAGAGTACCTCATCGGAACAAATCCGA
*
91463616 AACAGTAACGGTAACAGTA
1 AACAGTAACAGTAACAGTA
91463635 ACAATATCCG
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
53 63 1.00
ACGTcount: A:0.42, C:0.22, G:0.18, T:0.18
Consensus pattern (53 bp):
AACAGTAACAGTAACAGTACAGTACACAGAGTACCTCATCGGAACAAATCCGA
Found at i:91465275 original size:16 final size:15
Alignment explanation
Indices: 91465238--91465272 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
91465228 AATTTTTCCC
*
91465238 TTTTTCCTTCTTTCT
1 TTTTTCCTTCCTTCT
91465253 TTTTTCCTTCCTTCT
1 TTTTTCCTTCCTTCT
91465268 TTTTT
1 TTTTT
91465273 TCCCCTGCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (15 bp):
TTTTTCCTTCCTTCT
Found at i:91466777 original size:14 final size:15
Alignment explanation
Indices: 91466758--91466813 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
91466748 AATCTTCAAT
91466758 GATATG-CAATCTTA
1 GATATGACAATCTTA
91466772 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
91466789 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
91466807 GATATGA
1 GATATGA
91466814 TATGCAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:91466802 original size:35 final size:37
Alignment explanation
Indices: 91466756--91466834 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
91466746 AGAATCTTCA
91466756 ATGATATGCAATCTTAGATATGATA-CAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
91466792 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGA-
1 ATGATATGCAATCTTAGATATGATA-GCAATCTTAGAT
91466828 A-GATATG
1 ATGATATG
91466835 ATTTTGTAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (37 bp):
ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
Found at i:91466834 original size:17 final size:19
Alignment explanation
Indices: 91466756--91466827 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
91466746 AGAATCTTCA
91466756 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
91466775 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
91466792 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
91466810 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
91466828 AGATATGATT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:91466853 original size:22 final size:22
Alignment explanation
Indices: 91466756--91466850 Score: 79
Period size: 17 Copynumber: 4.8 Consensus size: 22
91466746 AGAATCTTCA
91466756 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
91466775 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
91466792 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
91466810 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
91466832 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
91466851 GATTTAATTT
Statistics
Matches: 67, Mismatches: 2, Indels: 10
0.85 0.03 0.13
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 15 0.22
22 8 0.12
23 12 0.18
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:91470723 original size:23 final size:23
Alignment explanation
Indices: 91470696--91470742 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
91470686 GGCAGTAGAG
**
91470696 AATGTAGCCCTAGAGGAAGGGAA
1 AATGTAGCCCTAGAAAAAGGGAA
* *
91470719 AATGTATCTCTAGAAAAAGGGAA
1 AATGTAGCCCTAGAAAAAGGGAA
91470742 A
1 A
91470743 GAGGTGAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.45, C:0.11, G:0.28, T:0.17
Consensus pattern (23 bp):
AATGTAGCCCTAGAAAAAGGGAA
Found at i:91475327 original size:221 final size:221
Alignment explanation
Indices: 91474850--91476108 Score: 1291
Period size: 221 Copynumber: 5.7 Consensus size: 221
91474840 AAAGCACAGT
* * * *
91474850 AGATTTGACCTTCAGGTGTTTACGCTGAAGC-GAATCCAAGATGATTTAACATCTCTGTATTGTC
1 AGATTTGGCTTTCACGTGTTTACGCTGAAGCAG-ATCTAAGATGATTTAACATCTCTGTATTGTC
* * *
91474914 AGAGAACAAATCGAAGAAACATATTTGGCATCTCTATATTCGACGGAGAGCAGATCGAAGACATA
65 AGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACAGAGAGCAGATCGAAGACATA
* * ** *
91474979 GCAGATCTAGCCTTTGGATG-TTTTCACATCGAAGTAGATCTAAGATGATTTGGCATCCTTGCGT
130 GCAGATCTAACCTTCGGATGACCTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGCGT
*
91475043 TGACAAGGAGTAGATCGAAGACATAGC
195 TGACAAGGAGCAGATCGAAGACATAGC
* *
91475070 AGATTTGGCTTTCACGTTTTTACGCTGAAACAGATCTAAGATGATTTAACATCTCTGTATTGTCA
1 AGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTAACATCTCTGTATTGTCA
*
91475135 GAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAG
66 GAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACAGAGAGCAGATCGAAGACATAG
*
91475200 CAGATCTAACCTTCGGATGACCTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGTGTT
131 CAGATCTAACCTTCGGATGACCTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGCGTT
*
91475265 GACAAGGAGCAAATCGAAGACATAGC
196 GACAAGGAGCAGATCGAAGACATAGC
** * *
91475291 AGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTATACTGTCA
1 AGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTAACATCTCTGTATTGTCA
* * * * * *
91475356 GAGAAAAAATCGAAGAAATAGATTTGGCACCTTCATATTCCACAGAGAGCAGATCGAAGACATAA
66 GAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACAGAGAGCAGATCGAAGACATAG
* **
91475421 CAG-----A---TC---TGACCTT--CATTGAAGTAGATCCAAGATGATTTGGCAT-CTCTGTAT
131 CAGATCTAACCTTCGGATGACCTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCT-TGCGT
** * * *
91475472 TAGACGGGGAGCAGATCAAAGACACAGT
195 T-GACAAGGAGCAGATCGAAGACATAGC
* * * ** *
91475500 AGATTTGACCTTCA------T----TGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGAC
1 AGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTAACATCTCTGTATT-GTC
* * * * * * **
91475555 GGGGAGCAGATCGAAGACACAGCAGATTTGAC-CCT-CATTGAAGCAGATCCAAGATGATTTGGC
65 AGAGAACAAATCGAAGA-A-A-CAGATTTGGCATCTCCA-T-ATTC-GA--C-AGA-GA----GC
* **
91475618 ATCTCTGTATTAGACGGAAG-CAGATTGAAGACATAGCAGATCTAACCTTCGGATG-TTTTCACA
116 A-----G-A-T---C-GAAGACA-T----------AGCAGATCTAACCTTCGGATGACCTTCACA
*
91475681 TTGAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTGACAAGGAGCAGATCGAAGACATAGC
159 TCGAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTGACAAGGAGCAGATCGAAGACATAGC
* *
91475744 AGATTTTGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTAACATCTCTATATTGTCA
1 AGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTAACATCTCTGTATTGTCA
* *
91475809 GAGAACAAATCGAATAAACAGATTTGGCATCTCCATATTCAACAGAGAGCAGATCGAAGACATAG
66 GAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACAGAGAGCAGATCGAAGACATAG
* * *
91475874 CAGATCTAACCTTCGGAGGACCTTCACATCGAAGTAAATCCAAGATGATTTGGCATCTTTGCGTT
131 CAGATCTAACCTTCGGATGACCTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGCGTT
*
91475939 GACAAGGAGTAGATCGAAGACATAGC
196 GACAAGGAGCAGATCGAAGACATAGC
* * ** *
91475965 AAATTTGGCTTTCACATGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTACTGTCA
1 AGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTAACATCTCTGTATTGTCA
* * * *
91476030 GAGAATAAATCGAAGAAACAAATTTGGCATCTCCATATTCGACGGAGAGCAGATCAAAGACATAG
66 GAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACAGAGAGCAGATCGAAGACATAG
* *
91476095 CAAATCTGACCTTC
131 CAGATCTAACCTTC
91476109 ATTGAAGCAG
Statistics
Matches: 865, Mismatches: 105, Indels: 137
0.78 0.09 0.12
Matches are distributed among these distances:
199 33 0.04
200 14 0.02
201 3 0.00
202 5 0.01
203 11 0.01
204 1 0.00
206 1 0.00
207 5 0.01
208 36 0.04
209 32 0.04
210 7 0.01
212 3 0.00
213 2 0.00
216 1 0.00
217 1 0.00
218 1 0.00
219 1 0.00
220 157 0.18
221 380 0.44
222 3 0.00
223 4 0.00
230 4 0.00
231 3 0.00
233 4 0.00
234 1 0.00
235 1 0.00
236 1 0.00
238 1 0.00
241 5 0.01
243 2 0.00
244 34 0.04
245 36 0.04
246 5 0.01
247 1 0.00
249 1 0.00
250 12 0.01
251 4 0.00
252 3 0.00
253 14 0.02
254 32 0.04
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.27
Consensus pattern (221 bp):
AGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTAACATCTCTGTATTGTCA
GAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACAGAGAGCAGATCGAAGACATAG
CAGATCTAACCTTCGGATGACCTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGCGTT
GACAAGGAGCAGATCGAAGACATAGC
Found at i:91475509 original size:78 final size:78
Alignment explanation
Indices: 91475402--91475667 Score: 417
Period size: 78 Copynumber: 3.4 Consensus size: 78
91475392 ATTCCACAGA
* * * *
91475402 GAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAAGTAGATCCAAGATGATTTGGCATCTC
1 GAGCAGATCGAAGACACAGCAGATTTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTC
91475467 TGTATTAGACGGG
66 TGTATTAGACGGG
* *
91475480 GAGCAGATCAAAGACACAGTAGATTTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTC
1 GAGCAGATCGAAGACACAGCAGATTTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTC
91475545 TGTATTAGACGGG
66 TGTATTAGACGGG
*
91475558 GAGCAGATCGAAGACACAGCAGATTTGACCCTCATTGAAGCAGATCCAAGATGATTTGGCATCTC
1 GAGCAGATCGAAGACACAGCAGATTTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTC
91475623 TGTATTAGAC-GG
66 TGTATTAGACGGG
* * * * *
91475635 AAGCAGATTGAAGACATAGCAGATCTAACCTTC
1 GAGCAGATCGAAGACACAGCAGATTTGACCTTC
91475668 GGATGTTTTC
Statistics
Matches: 173, Mismatches: 15, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
77 29 0.17
78 144 0.83
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.24
Consensus pattern (78 bp):
GAGCAGATCGAAGACACAGCAGATTTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTC
TGTATTAGACGGG
Found at i:91475764 original size:89 final size:87
Alignment explanation
Indices: 91475590--91475799 Score: 212
Period size: 89 Copynumber: 2.4 Consensus size: 87
91475580 ATTTGACCCT
* *
91475590 CATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGAAGCAGATTGAAGACATAGC
1 CATTGAAGCAGATCCAAGATGATTTGGCATCTCTGCATTAGACGGAAGCAGATCGAAGACATAGC
*
91475655 AGATCTAACCTTCGGATGTTTTCA
66 AGATCTAACCTTCCGATG-TTT-A
* *
91475679 CATTGAAGTAGATCCAAGATGATTTGGCATC-CTTGCGTT-GACAAGG-AGCAGATCGAAGACAT
1 CATTGAAGCAGATCCAAGATGATTTGGCATCTC-TGCATTAGAC--GGAAGCAGATCGAAGACAT
* ** *
91475741 AGCAGATTTTGCTTTCACG-TGTTTA
63 AGCAGATCTAACCTTC-CGATGTTTA
** * **
91475766 CGCTGAAGCAGATCTAAGATGATTTAACATCTCT
1 CATTGAAGCAGATCCAAGATGATTTGGCATCTCT
91475800 ATATTGTCAG
Statistics
Matches: 101, Mismatches: 15, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
87 27 0.27
88 8 0.08
89 63 0.62
90 3 0.03
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.29
Consensus pattern (87 bp):
CATTGAAGCAGATCCAAGATGATTTGGCATCTCTGCATTAGACGGAAGCAGATCGAAGACATAGC
AGATCTAACCTTCCGATGTTTA
Found at i:91476162 original size:78 final size:78
Alignment explanation
Indices: 91476051--91476266 Score: 317
Period size: 78 Copynumber: 2.8 Consensus size: 78
91476041 GAAGAAACAA
** * * * *
91476051 ATTTGGCATCTCCATATTCGACGGAGAGCAGATCAAAGACATAGCAAATCTGACCTTCATTGAAG
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAG
* *
91476116 CAGGTCCAAGATG
66 CAGATCCAAAATG
* *
91476129 ATTTGGCATCTCTGTATTAGACGGGGAGTAGATCGAAGACATAACAGAT-TGGACCTTCATTGAA
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGAA
91476193 GCAGATCCAAAATG
65 GCAGATCCAAAATG
*
91476207 ATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAT
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
91476267 GTGTTTACAT
Statistics
Matches: 123, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
77 1 0.01
78 121 0.98
79 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.25
Consensus pattern (78 bp):
ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAG
CAGATCCAAAATG
Found at i:91476255 original size:674 final size:675
Alignment explanation
Indices: 91474936--91476266 Score: 2232
Period size: 674 Copynumber: 2.0 Consensus size: 675
91474926 GAAGAAACAT
* * *
91474936 ATTTGGCATCTCTATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAGCCTTTGGATGTT
1 ATTTGGCATCTCTATATTAGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGTT
* *
91475001 TTCACATCGAAGTAGATCTAAGATGATTTGGCATCCTTGCGTTGACAAGGAGTAGATCGAAGACA
66 TTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTGACAAGGAGCAGATCGAAGACA
* *
91475066 TAGCAGATTTGGCTTTCACGTTTTTACGCTGAAACAGATCTAAGATGATTTAACATCTCTGTATT
131 TAGCAGATTTGGCTTTCACGTGTTTACGCTGAAACAGATCTAAGATGATTTAACATCTCTATATT
* *
91475131 GTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGAC
196 GTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCAACAGAGAGCAGATCGAAGAC
* *
91475196 ATAGCAGATCTAACCTTCGGATGACCTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTG
261 ATAGCAGATCTAACCTTCGGAGGACCTTCACATCGAAGTAAATCCAAGATGATTTGGCATCCTTG
* * *
91475261 TGTTGACAAGGAGCAAATCGAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGAT
326 CGTTGACAAGGAGCAAATCGAAGACATAGCAAATTTGGCTTTCACATGTTTACGCTGAAGCAGAT
* * *
91475326 CTAAGATGATTTGGCATCTCTATACTGTCAGAGAAAAAATCGAAGAAATAGATTTGGCACCTTCA
391 CTAAGATGATTTGGCATCTCTATACTGTCAGAGAAAAAATCGAAGAAACAAATTTGGCACCTCCA
* * *
91475391 TATTCCACAGAGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAAGTAGATCCAAGATGA
456 TATTCCACAGAGAGCAGATCAAAGACATAACAAATCTGACCTTCATTGAAGCAGATCCAAGATGA
** *
91475456 TTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACACAGTAGATTTGACCTTCATTGAAGC
521 TTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACACAACAGATTGGACCTTCATTGAAGC
* * *
91475521 AGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATTTGA
586 AGATCCAAAATGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGACACAGCAGATCTGA
91475586 CCCTCATTGAAGCAGATCCAAGATG
651 CCCTCATTGAAGCAGATCCAAGATG
* *
91475611 ATTTGGCATCTCTGTATTAGACGGA-AGCAGATTGAAGACATAGCAGATCTAACCTTCGGATGTT
1 ATTTGGCATCTCTATATTAGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGTT
*
91475675 TTCACATTGAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTGACAAGGAGCAGATCGAAGACA
66 TTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTGACAAGGAGCAGATCGAAGACA
* *
91475740 TAGCAGATTTTGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTAACATCTCTATATT
131 TAGCAGATTTGGCTTTCACGTGTTTACGCTGAAACAGATCTAAGATGATTTAACATCTCTATATT
*
91475805 GTCAGAGAACAAATCGAATAAACAGATTTGGCATCTCCATATTCAACAGAGAGCAGATCGAAGAC
196 GTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCAACAGAGAGCAGATCGAAGAC
*
91475870 ATAGCAGATCTAACCTTCGGAGGACCTTCACATCGAAGTAAATCCAAGATGATTTGGCATCTTTG
261 ATAGCAGATCTAACCTTCGGAGGACCTTCACATCGAAGTAAATCCAAGATGATTTGGCATCCTTG
* *
91475935 CGTTGACAAGGAGTAGATCGAAGACATAGCAAATTTGGCTTTCACATGTTTACGCTGAAGCAGAT
326 CGTTGACAAGGAGCAAATCGAAGACATAGCAAATTTGGCTTTCACATGTTTACGCTGAAGCAGAT
* * *
91476000 CTAAGATGATTTGGCATCTCTGTACTGTCAGAGAATAAATCGAAGAAACAAATTTGGCATCTCCA
391 CTAAGATGATTTGGCATCTCTATACTGTCAGAGAAAAAATCGAAGAAACAAATTTGGCACCTCCA
* * * *
91476065 TATTCGACGGAGAGCAGATCAAAGACATAGCAAATCTGACCTTCATTGAAGCAGGTCCAAGATGA
456 TATTCCACAGAGAGCAGATCAAAGACATAACAAATCTGACCTTCATTGAAGCAGATCCAAGATGA
* * *
91476130 TTTGGCATCTCTGTATTAGACGGGGAGTAGATCGAAGACATAACAGATTGGACCTTCATTGAAGC
521 TTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACACAACAGATTGGACCTTCATTGAAGC
*
91476195 AGATCCAAAATGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGACATAGCAGATCTGA
586 AGATCCAAAATGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGACACAGCAGATCTGA
*
91476260 CCTTCAT
651 CCCTCAT
91476267 GTGTTTACAT
Statistics
Matches: 609, Mismatches: 47, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
674 586 0.96
675 23 0.04
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (675 bp):
ATTTGGCATCTCTATATTAGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGTT
TTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTGACAAGGAGCAGATCGAAGACA
TAGCAGATTTGGCTTTCACGTGTTTACGCTGAAACAGATCTAAGATGATTTAACATCTCTATATT
GTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCAACAGAGAGCAGATCGAAGAC
ATAGCAGATCTAACCTTCGGAGGACCTTCACATCGAAGTAAATCCAAGATGATTTGGCATCCTTG
CGTTGACAAGGAGCAAATCGAAGACATAGCAAATTTGGCTTTCACATGTTTACGCTGAAGCAGAT
CTAAGATGATTTGGCATCTCTATACTGTCAGAGAAAAAATCGAAGAAACAAATTTGGCACCTCCA
TATTCCACAGAGAGCAGATCAAAGACATAACAAATCTGACCTTCATTGAAGCAGATCCAAGATGA
TTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACACAACAGATTGGACCTTCATTGAAGC
AGATCCAAAATGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGACACAGCAGATCTGA
CCCTCATTGAAGCAGATCCAAGATG
Found at i:91476428 original size:45 final size:45
Alignment explanation
Indices: 91476206--91476434 Score: 223
Period size: 45 Copynumber: 5.1 Consensus size: 45
91476196 GATCCAAAAT
* * *
91476206 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGACATAGCA
1 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAG--ATAACA
* * * * * * * *
91476253 GATCTGACCT-TCATGTGTTTACATC--GAAGCAGATCCAAGATGACA
1 GATTTGGCGTCTC-TGT-ATTAGA-CGGGGAGCAGATCGAAGATAACA
* * **
91476298 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGA-AGTA
1 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
91476342 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* * *
91476387 GATTTGGCGTCTCTGTATTAGACGGGGAGTAGATCAAAGATAGCA
1 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
91476432 GAT
1 GAT
91476435 ATCGCCTTCC
Statistics
Matches: 147, Mismatches: 28, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
43 1 0.01
44 43 0.29
45 73 0.50
46 4 0.03
47 21 0.14
48 4 0.03
49 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (45 bp):
GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
Found at i:91476462 original size:89 final size:88
Alignment explanation
Indices: 91476206--91476469 Score: 241
Period size: 89 Copynumber: 2.9 Consensus size: 88
91476196 GATCCAAAAT
* * * *
91476206 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGACATAGCAGATCTGACCTTCATGTGT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATC-AA-AGATAGCAGAT-TG-CCTTCCTGAGT
* * *
91476271 T-TACATCGAAGCAGATCCAAGATGACA
62 TGTACGT-GAAGCAGATCGAAGATAACA
** * * *
91476298 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGA-AGTAGATTTGGCGTCTCTGTA-TT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCAGA-TTGCCTTC-CTG-AGTT
* *
91476361 AG-ACGGGGAGCAGATCGAAGATAACA
63 -GTACGTGAAGCAGATCGAAGATAACA
* *
91476387 GATTTGGCGTCTCTGTATTAGACGGGGAGTAGATCAAAGATAGCAGATATCGCCTTCCTGAGTTG
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCAGAT-T-GCCTTCCTGAGTTG
*
91476452 TA-GTGAAGCAGATTGAAG
64 TACGTGAAGCAGATCGAAG
91476470 CCGTCAATAG
Statistics
Matches: 138, Mismatches: 24, Indels: 23
0.75 0.13 0.12
Matches are distributed among these distances:
88 3 0.02
89 80 0.58
90 17 0.12
91 5 0.04
92 33 0.24
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (88 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCAGATTGCCTTCCTGAGTTGTA
CGTGAAGCAGATCGAAGATAACA
Found at i:91476806 original size:14 final size:15
Alignment explanation
Indices: 91476787--91476842 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
91476777 AATCTTCAAT
91476787 GATATG-CAATCTTA
1 GATATGACAATCTTA
91476801 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
91476818 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
91476836 GATATGA
1 GATATGA
91476843 TATGCAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:91476831 original size:35 final size:37
Alignment explanation
Indices: 91476785--91476863 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
91476775 ATAATCTTCA
91476785 ATGATATGCAATCTTAGATATGATA-CAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
91476821 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGA-
1 ATGATATGCAATCTTAGATATGATA-GCAATCTTAGAT
91476857 A-GATATG
1 ATGATATG
91476864 ATTTTGTAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (37 bp):
ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
Found at i:91476863 original size:17 final size:19
Alignment explanation
Indices: 91476785--91476856 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
91476775 ATAATCTTCA
91476785 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
91476804 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
91476821 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
91476839 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
91476857 AGATATGATT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:91476882 original size:22 final size:22
Alignment explanation
Indices: 91476785--91476879 Score: 79
Period size: 17 Copynumber: 4.8 Consensus size: 22
91476775 ATAATCTTCA
91476785 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
91476804 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
91476821 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
91476839 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
91476861 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
91476880 GATTTAATTT
Statistics
Matches: 67, Mismatches: 2, Indels: 10
0.85 0.03 0.13
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 15 0.22
22 8 0.12
23 12 0.18
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:91479132 original size:29 final size:29
Alignment explanation
Indices: 91479083--91479142 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 29
91479073 AGTATAAATG
* **
91479083 TATTAGGTCATTTACGCAAAAAGTAAAAA
1 TATTAGGTCATTTACGAAAAAACAAAAAA
**
91479112 TATTAGGTCATTTATTAAAAAACAAAAAA
1 TATTAGGTCATTTACGAAAAAACAAAAAA
91479141 TA
1 TA
91479143 AGGATGAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.52, C:0.08, G:0.10, T:0.30
Consensus pattern (29 bp):
TATTAGGTCATTTACGAAAAAACAAAAAA
Found at i:91479301 original size:38 final size:37
Alignment explanation
Indices: 91479256--91479330 Score: 105
Period size: 38 Copynumber: 2.0 Consensus size: 37
91479246 ATAACGGAAA
* *
91479256 ATGTTAATGAGTGACTGATTTGTAACTTTTTGATAACG
1 ATGTTAATGAGTAACTGATTTGTAAC-TTTCGATAACG
* *
91479294 ATGTTAATGGGTAACTGATTTGTCACTTTCGATAACG
1 ATGTTAATGAGTAACTGATTTGTAACTTTCGATAACG
91479331 TTAATGACTA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
37 10 0.30
38 23 0.70
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.40
Consensus pattern (37 bp):
ATGTTAATGAGTAACTGATTTGTAACTTTCGATAACG
Found at i:91481124 original size:29 final size:29
Alignment explanation
Indices: 91481082--91481142 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
91481072 TCTTACACAG
91481082 AATGGCTAAGTTGAGTGCTTTTGAGTTTA
1 AATGGCTAAGTTGAGTGCTTTTGAGTTTA
91481111 AATGGCTAAGTTGAGTGCTTTTGAGTTTA
1 AATGGCTAAGTTGAGTGCTTTTGAGTTTA
91481140 AAT
1 AAT
91481143 TTGACAGTGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.26, C:0.07, G:0.26, T:0.41
Consensus pattern (29 bp):
AATGGCTAAGTTGAGTGCTTTTGAGTTTA
Found at i:91482274 original size:34 final size:34
Alignment explanation
Indices: 91482231--91482299 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
91482221 AATAAAACCC
91482231 ATTCTGGTCATGTTTTCAACATTTCTAATTTCAA
1 ATTCTGGTCATGTTTTCAACATTTCTAATTTCAA
91482265 ATTCTGGTCATGTTTTCAACATTTCTAATTTCAA
1 ATTCTGGTCATGTTTTCAACATTTCTAATTTCAA
91482299 A
1 A
91482300 AACTAGTTCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.28, C:0.17, G:0.09, T:0.46
Consensus pattern (34 bp):
ATTCTGGTCATGTTTTCAACATTTCTAATTTCAA
Found at i:91492016 original size:21 final size:22
Alignment explanation
Indices: 91491981--91492022 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
91491971 TCAATGTTTA
* *
91491981 TATTTTTTATTAATTTAATTTT
1 TATTTTTTATAAATTAAATTTT
91492003 TATTTTTTA-AAATTAAATTT
1 TATTTTTTATAAATTAAATTT
91492023 GATTATTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (22 bp):
TATTTTTTATAAATTAAATTTT
Found at i:91503211 original size:17 final size:17
Alignment explanation
Indices: 91503168--91503215 Score: 55
Period size: 16 Copynumber: 2.9 Consensus size: 17
91503158 ACATTGTTTT
*
91503168 TTTATATA-ACATTTAA
1 TTTATATATTCATTTAA
**
91503184 AATAT-TATTCATTTAA
1 TTTATATATTCATTTAA
91503200 TTTATATATTCATTTA
1 TTTATATATTCATTTA
91503216 TATATAAATT
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
15 2 0.08
16 13 0.52
17 10 0.40
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.54
Consensus pattern (17 bp):
TTTATATATTCATTTAA
Found at i:91506721 original size:22 final size:21
Alignment explanation
Indices: 91506696--91506740 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
91506686 AAAATAGAGC
91506696 AACTAAAAACAAAAAAAAATAA
1 AACTAAAAA-AAAAAAAAATAA
* *
91506718 AACTAAAAAGAAAAGAAATAA
1 AACTAAAAAAAAAAAAAATAA
91506739 AA
1 AA
91506741 TCAATGATCC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.80, C:0.07, G:0.04, T:0.09
Consensus pattern (21 bp):
AACTAAAAAAAAAAAAAATAA
Found at i:91508460 original size:18 final size:18
Alignment explanation
Indices: 91508433--91508477 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
91508423 CAATGTTAAG
91508433 TTTTTGTAT-ATTTTTATGA
1 TTTTT-TATAATTTTTAT-A
91508452 TTTTTTATAATTTTTATA
1 TTTTTTATAATTTTTATA
*
91508470 TTTCTTAT
1 TTTTTTAT
91508478 GAGAAAAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 11 0.46
19 13 0.54
ACGTcount: A:0.22, C:0.02, G:0.04, T:0.71
Consensus pattern (18 bp):
TTTTTTATAATTTTTATA
Found at i:91510019 original size:28 final size:27
Alignment explanation
Indices: 91509960--91510047 Score: 78
Period size: 28 Copynumber: 3.3 Consensus size: 27
91509950 CTACAAATGT
*
91509960 TATTAAAATTTA-ATAAAA-A-TAAAA
1 TATTAAAATTTATAAAAAATATTAAAA
91509984 TATTAAAAATTTATAAAAAATATTAAAA
1 TATT-AAAATTTATAAAAAATATTAAAA
*
91510012 T-TGTAAAATATTATAAAATATA-TAGAAA
1 TAT-TAAAAT-TTATAAAAAATATTA-AAA
*
91510040 TATAAAAA
1 TATTAAAA
91510048 AATGTACAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 12
0.78 0.04 0.18
Matches are distributed among these distances:
24 4 0.08
25 8 0.15
26 5 0.09
27 9 0.17
28 26 0.49
29 1 0.02
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (27 bp):
TATTAAAATTTATAAAAAATATTAAAA
Found at i:91510042 original size:20 final size:18
Alignment explanation
Indices: 91509978--91510067 Score: 67
Period size: 18 Copynumber: 4.8 Consensus size: 18
91509968 TTTAATAAAA
91509978 ATAAAATATTA-AAAATTT
1 ATAAAATATTATAAAA-TT
*
91509996 ATAAAA-AATATTAAAATT
1 ATAAAATATTA-TAAAATT
*
91510014 GTAAAATATTATAAAATAT
1 ATAAAATATTATAAAAT-T
* *
91510033 ATAGAAATATAAAAAAATGT
1 ATA-AAATATTATAAAAT-T
* *
91510053 ACAAAATTTTATAAA
1 ATAAAATATTATAAA
91510068 TTCGTAAAAA
Statistics
Matches: 56, Mismatches: 11, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
17 3 0.05
18 19 0.34
19 19 0.34
20 15 0.27
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.33
Consensus pattern (18 bp):
ATAAAATATTATAAAATT
Found at i:91512717 original size:25 final size:25
Alignment explanation
Indices: 91512683--91512734 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
91512673 GATATAAATT
* *
91512683 ATATAATACATACAA-ATAAAATAAA
1 ATATAATACA-AAAATATAAAACAAA
*
91512708 ATATATTACAAAAATATAAAACAAA
1 ATATAATACAAAAATATAAAACAAA
91512733 AT
1 AT
91512735 CAAGCCAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 3 0.13
25 20 0.87
ACGTcount: A:0.67, C:0.08, G:0.00, T:0.25
Consensus pattern (25 bp):
ATATAATACAAAAATATAAAACAAA
Found at i:91513026 original size:19 final size:19
Alignment explanation
Indices: 91513002--91513042 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
91512992 ATTCTTTAAT
91513002 ATTCTTAATAATTTATTTA
1 ATTCTTAATAATTTATTTA
91513021 ATTCTTAATAATTTATTTA
1 ATTCTTAATAATTTATTTA
91513040 ATT
1 ATT
91513043 TAATCAGATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.59
Consensus pattern (19 bp):
ATTCTTAATAATTTATTTA
Found at i:91517816 original size:22 final size:23
Alignment explanation
Indices: 91517790--91517835 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
91517780 CAACCAAACC
91517790 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
91517812 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
91517835 A
1 A
91517836 CGTCATCGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:91517841 original size:23 final size:23
Alignment explanation
Indices: 91517797--91517841 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
91517787 ACCAATTCAA
*
91517797 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
91517820 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
91517842 CGTATACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:91518946 original size:19 final size:19
Alignment explanation
Indices: 91518922--91518961 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
91518912 TTTCATGTTC
91518922 ATATGCAACAATTTCTATA
1 ATATGCAACAATTTCTATA
91518941 ATATGCAACAATTTCTATA
1 ATATGCAACAATTTCTATA
91518960 AT
1 AT
91518962 TTCATTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.42, C:0.15, G:0.05, T:0.38
Consensus pattern (19 bp):
ATATGCAACAATTTCTATA
Found at i:91520877 original size:8 final size:8
Alignment explanation
Indices: 91520864--91520921 Score: 64
Period size: 8 Copynumber: 7.0 Consensus size: 8
91520854 AAGTAATTTT
*
91520864 ATTTTTCA
1 ATTTTTAA
91520872 ATTTTTGAAA
1 ATTTTT--AA
91520882 ATTTTTAA
1 ATTTTTAA
91520890 ATTTTTAA
1 ATTTTTAA
*
91520898 AATTTTAA
1 ATTTTTAA
91520906 ATTATTT-A
1 ATT-TTTAA
91520914 ATTTTTAA
1 ATTTTTAA
91520922 TTTATTAATT
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
7 3 0.07
8 30 0.70
9 3 0.07
10 7 0.16
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (8 bp):
ATTTTTAA
Found at i:91520887 original size:18 final size:17
Alignment explanation
Indices: 91520864--91520914 Score: 68
Period size: 18 Copynumber: 2.9 Consensus size: 17
91520854 AAGTAATTTT
*
91520864 ATTTTTCAATTTTTGAAA
1 ATTTTTAAATTTTT-AAA
91520882 ATTTTTAAATTTTTAAA
1 ATTTTTAAATTTTTAAA
91520899 A-TTTTAAATTATTTAA
1 ATTTTTAAATT-TTTAA
91520915 TTTTTAATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
16 9 0.29
17 9 0.29
18 13 0.42
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (17 bp):
ATTTTTAAATTTTTAAA
Found at i:91520919 original size:16 final size:16
Alignment explanation
Indices: 91520881--91520931 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
91520871 AATTTTTGAA
91520881 AATTTTTAAATT-TTT
1 AATTTTTAAATTATTT
*
91520896 AAAATTTTAAATTATTT
1 -AATTTTTAAATTATTT
*
91520913 AATTTTTAATTTA-TT
1 AATTTTTAAATTATTT
91520928 AATT
1 AATT
91520932 GTGCTTGTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
15 6 0.19
16 22 0.71
17 3 0.10
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
AATTTTTAAATTATTT
Found at i:91521704 original size:19 final size:19
Alignment explanation
Indices: 91521672--91521717 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
91521662 CGTATTTTTA
91521672 TTAAATTT-TGATATAAATC
1 TTAAATTTATGATATAAA-C
*
91521691 TTAAATTTAT-ATATGAAC
1 TTAAATTTATGATATAAAC
*
91521709 TTTAATTTA
1 TTAAATTTA
91521718 ATGTACAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 9 0.38
19 14 0.58
20 1 0.04
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.50
Consensus pattern (19 bp):
TTAAATTTATGATATAAAC
Found at i:91522784 original size:11 final size:11
Alignment explanation
Indices: 91522762--91522816 Score: 67
Period size: 11 Copynumber: 5.1 Consensus size: 11
91522752 TATTAGAATC
*
91522762 TACCCATTCCT
1 TACCCATACCT
*
91522773 TGCCCATACCT
1 TACCCATACCT
91522784 TACCCATACCT
1 TACCCATACCT
*
91522795 TTCCCATACC-
1 TACCCATACCT
*
91522805 TACCCGTACCT
1 TACCCATACCT
91522816 T
1 T
91522817 GGAAAGGTCA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
10 8 0.22
11 29 0.78
ACGTcount: A:0.20, C:0.45, G:0.04, T:0.31
Consensus pattern (11 bp):
TACCCATACCT
Found at i:91522814 original size:21 final size:21
Alignment explanation
Indices: 91522761--91522817 Score: 78
Period size: 22 Copynumber: 2.7 Consensus size: 21
91522751 GTATTAGAAT
*
91522761 CTACCCATTCCTTGCCCATAC
1 CTACCCATACCTTGCCCATAC
*
91522782 CTTACCCATACCTTTCCCATAC
1 C-TACCCATACCTTGCCCATAC
*
91522804 CTACCCGTACCTTG
1 CTACCCATACCTTG
91522818 GAAAGGTCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
21 12 0.39
22 19 0.61
ACGTcount: A:0.19, C:0.46, G:0.05, T:0.30
Consensus pattern (21 bp):
CTACCCATACCTTGCCCATAC
Found at i:91528434 original size:210 final size:210
Alignment explanation
Indices: 91528070--91528475 Score: 580
Period size: 210 Copynumber: 1.9 Consensus size: 210
91528060 AGGCTTAAGC
* * * * *
91528070 TTTTGAATTTAAGAGGCTGCAAAAGTCTGAGGAGTTTTCCAACCAAAATTGGTATGGAATCTCTT
1 TTTTGAATTTAAAAGACTGCAAAAGTCTGAAGAGTCTTCCAACCAAAATTGGAATGGAATCTCTT
* * * *
91528135 GAAAAGTTAATTCTTTCAGGTTGCTCAAAACTTCAAAGCTTTCCAGAGATTGATGGGAAAATGGA
66 GAAAAGTTAATTCTCTCAGGTTGCACAAAACTTAAAAGCTTTCCAGAGATTGATGGCAAAATGGA
* * * * *
91528200 ATGTTTGTTGGAGCTTTGTTTTGATGGGACAAACATTAAAGATCTACCT-TCTTCAATCGGAAAT
131 ATGCTTGCTAGAGCTTTATTTTGATGGGACAAACATTAAAGAGCTACCTAT-TTCAATCGGAAAT
91528264 CTCAGAAGACTTAAAG
195 CTCAGAAGACTTAAAG
* * *
91528280 TTTTGAATTTAAAAGACTGTAAAAGTCTTAAGAGTCTTCCAATCAAAATTGGAATGGAATCTCTT
1 TTTTGAATTTAAAAGACTGCAAAAGTCTGAAGAGTCTTCCAACCAAAATTGGAATGGAATCTCTT
* *
91528345 GAAAAGTTAATTCTCTCAGGTTGCACCAATCTTAAAAGCTTTCCAGAGATTGATGGCAAAATGGA
66 GAAAAGTTAATTCTCTCAGGTTGCACAAAACTTAAAAGCTTTCCAGAGATTGATGGCAAAATGGA
* *** *
91528410 ATGCTTGCTAGAGCTTTATTTTGATGGGTCGGGCATTAAAGAGCTACCTATTTCAATTGGAAATC
131 ATGCTTGCTAGAGCTTTATTTTGATGGGACAAACATTAAAGAGCTACCTATTTCAATCGGAAATC
91528475 T
196 T
91528476 GAGCAGTCTT
Statistics
Matches: 171, Mismatches: 24, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
210 170 0.99
211 1 0.01
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.33
Consensus pattern (210 bp):
TTTTGAATTTAAAAGACTGCAAAAGTCTGAAGAGTCTTCCAACCAAAATTGGAATGGAATCTCTT
GAAAAGTTAATTCTCTCAGGTTGCACAAAACTTAAAAGCTTTCCAGAGATTGATGGCAAAATGGA
ATGCTTGCTAGAGCTTTATTTTGATGGGACAAACATTAAAGAGCTACCTATTTCAATCGGAAATC
TCAGAAGACTTAAAG
Found at i:91529305 original size:7 final size:7
Alignment explanation
Indices: 91529295--91529319 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
91529285 AACATGTTGC
91529295 TGCAGCA
1 TGCAGCA
91529302 TGCAGCA
1 TGCAGCA
91529309 TGCAGCA
1 TGCAGCA
91529316 TGCA
1 TGCA
91529320 TACAAGCCGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.28, G:0.28, T:0.16
Consensus pattern (7 bp):
TGCAGCA
Found at i:91532605 original size:202 final size:207
Alignment explanation
Indices: 91532100--91532652 Score: 703
Period size: 210 Copynumber: 2.7 Consensus size: 207
91532090 ATTTAAGAGG
* * * *
91532100 CTGCAAAAGTCTGAGGAGTTTTCCAA-CAAAAATTGGTATGGAATCTTTTGAAAAGTTAATTCTT
1 CTGCAAAAGTCTTAGGAGTCTTCCAATC-AAAATTGGAATGGAATCTCTTGAAAAGTTAATTCTT
* * * * * *
91532164 TCAGGTTGCTCAAAACTTCAAAGCTTTCCAGAGATTGATAGGAAAATGGAATGTTTGTTGGAGCT
65 TCAGGTTGCTCAAATCTTAAAAGCTTTCCAGAGATTGATAGCAAAATGGAATGCTTGCTAGAGCT
* * * * *
91532229 TTGTTTTGATGGAACAAATATTAAAGATCTACCTTCTTCAATCGTAAATCTCAGAAGACATAAAG
130 TTATTTAGATGG-ACAAACATTAAAGATCGACCTTCTTCAATCGTAAATCTCAAAAGACATAAAG
91532294 TTTTGAATTTAGAAGA
194 TTTTGAA--TAGAAGA
* *
91532310 CTGCAAAAGTCTTAGGAGTCTTCCAATCAAAATTGGAAT-GAGATCTCTTGAAAATTTGATTCTT
1 CTGCAAAAGTCTTAGGAGTCTTCCAATCAAAATTGGAATGGA-ATCTCTTGAAAAGTTAATTCTT
* * * * *
91532374 TCAGGTTGCTCCAATCTTAAAATCTTTCCAGAGATTGATAGCAAAATAGAATGCCTGCTAGATCT
65 TCAGGTTGCTCAAATCTTAAAAGCTTTCCAGAGATTGATAGCAAAATGGAATGCTTGCTAGAGCT
* * * *
91532439 TTATTTAGATAGGACAAACATTAGAG-T-GATCTTCTTTAATCG-AAAGTCTCAAAAGACTTAAA
130 TTATTTAGAT-GGACAAACATTAAAGATCGACCTTCTTCAATCGTAAA-TCTCAAAAGACATAAA
91532501 GTTTTG-A-A-AAGA
193 GTTTTGAATAGAAGA
*
91532513 CTGCAAAAGTCTTA-GACGTCTTCCAATCAAAATTGG-ATGGAATCCCTTGAAAAGTTAATTCTT
1 CTGCAAAAGTCTTAGGA-GTCTTCCAATCAAAATTGGAATGGAATCTCTTGAAAAGTTAATTCTT
* *
91532576 TCAGGTTGCTCAAATCTTAAAAGCTTTCCAGAGATTGATGGCAAAATGGAATGCTTGCAAGAGCT
65 TCAGGTTGCTCAAATCTTAAAAGCTTTCCAGAGATTGATAGCAAAATGGAATGCTTGCTAGAGCT
91532641 TTATTTAGATGG
130 TTATTTAGATGG
91532653 GACGGGCATT
Statistics
Matches: 301, Mismatches: 36, Indels: 21
0.84 0.10 0.06
Matches are distributed among these distances:
201 2 0.01
202 91 0.30
203 39 0.13
204 1 0.00
207 4 0.01
208 32 0.11
209 3 0.01
210 126 0.42
211 3 0.01
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.33
Consensus pattern (207 bp):
CTGCAAAAGTCTTAGGAGTCTTCCAATCAAAATTGGAATGGAATCTCTTGAAAAGTTAATTCTTT
CAGGTTGCTCAAATCTTAAAAGCTTTCCAGAGATTGATAGCAAAATGGAATGCTTGCTAGAGCTT
TATTTAGATGGACAAACATTAAAGATCGACCTTCTTCAATCGTAAATCTCAAAAGACATAAAGTT
TTGAATAGAAGA
Found at i:91543117 original size:40 final size:40
Alignment explanation
Indices: 91543062--91543144 Score: 132
Period size: 40 Copynumber: 2.1 Consensus size: 40
91543052 ACATCTTCAG
*
91543062 TTGCACGTACTTTACCCGAGA-AACTTATATGCATGGATTC
1 TTGCACGTACTTTACCCG-GACAACTTATATGCATGAATTC
*
91543102 TTGCACGTACTTTACCCGGACAACTTATGTGCATGAATTC
1 TTGCACGTACTTTACCCGGACAACTTATATGCATGAATTC
91543142 TTG
1 TTG
91543145 TGTGCATGAA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
39 2 0.05
40 38 0.95
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (40 bp):
TTGCACGTACTTTACCCGGACAACTTATATGCATGAATTC
Found at i:91545938 original size:40 final size:40
Alignment explanation
Indices: 91545883--91545965 Score: 132
Period size: 40 Copynumber: 2.1 Consensus size: 40
91545873 ACATCTTCAG
* *
91545883 TTGCACGTACTTTACCCGGGA-AACTTATGTGCATGGATTC
1 TTGCACGTACTTTACCC-GAACAACTTATGTGCATGAATTC
91545923 TTGCACGTACTTTACCCGAACAACTTATGTGCATGAATTC
1 TTGCACGTACTTTACCCGAACAACTTATGTGCATGAATTC
91545963 TTG
1 TTG
91545966 TGTGCATGAA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
39 2 0.05
40 38 0.95
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.34
Consensus pattern (40 bp):
TTGCACGTACTTTACCCGAACAACTTATGTGCATGAATTC
Found at i:91559897 original size:210 final size:210
Alignment explanation
Indices: 91559518--91559923 Score: 573
Period size: 210 Copynumber: 1.9 Consensus size: 210
91559508 AGGCTTAAGC
* * * * *
91559518 TTTTGAATTTAAGAGGCTGCAAAAGTCTGAGGAGTTTTCCAACCAAAATTGGAATGCTATCTCTT
1 TTTTGAATTTAAAAGACAGCAAAAGTCTGAGGAGTCTTCCAACCAAAATTGGAATGCAATCTCTT
* *
91559583 GAAAAGTTAATTCTTTCAGGTTGCTCAAAACTTCAAAGCTTTCCAGAGATTGATGGGAAAATGGA
66 GAAAAGTTAATTCTTTCAGGTTGCTCAAAACTTAAAAGCTTTCCAGAGATTGATGGCAAAATGGA
** * * * *
91559648 ATGTTTGTTGGAGCTTTGTTTTGATGGGACAAACATTAAAGAGCTACCT-TCTTCAATGGGAAAT
131 ATGCCTGCTAGAGCTTTATTTAGATGGGACAAACATTAAAGAGCTACCTAT-TTCAATGGGAAAT
91559712 CTTGGAAGACTTAAAG
195 CTTGGAAGACTTAAAG
* *
91559728 TTTTGAATTTAAAAGACAGCAAAAGTCTTG-GGAGTCTTCCAATCAAAATTGGAATGGAATCTCT
1 TTTTGAATTTAAAAGACAGCAAAAGTC-TGAGGAGTCTTCCAACCAAAATTGGAATGCAATCTCT
* * *
91559792 TGAAAAGTTAATTCTTTCAGGTTGCTCCAATCTTAAAAGGTTTCCAGAGATTGATGGCAAAATGG
65 TGAAAAGTTAATTCTTTCAGGTTGCTCAAAACTTAAAAGCTTTCCAGAGATTGATGGCAAAATGG
* *** *
91559857 AATGCCTGCTAGAGCTTTATTTAGATGGGTCGGGCATTAAAGAGCTACCTATTTCAATTGGAAAT
130 AATGCCTGCTAGAGCTTTATTTAGATGGGACAAACATTAAAGAGCTACCTATTTCAATGGGAAAT
91559922 CT
195 CT
91559924 GAGTAGTCTT
Statistics
Matches: 171, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
210 168 0.98
211 3 0.02
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.32
Consensus pattern (210 bp):
TTTTGAATTTAAAAGACAGCAAAAGTCTGAGGAGTCTTCCAACCAAAATTGGAATGCAATCTCTT
GAAAAGTTAATTCTTTCAGGTTGCTCAAAACTTAAAAGCTTTCCAGAGATTGATGGCAAAATGGA
ATGCCTGCTAGAGCTTTATTTAGATGGGACAAACATTAAAGAGCTACCTATTTCAATGGGAAATC
TTGGAAGACTTAAAG
Found at i:91564611 original size:24 final size:24
Alignment explanation
Indices: 91564581--91564633 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
91564571 CTATGTTATA
91564581 ATATTTGTAACTAAAATTAATATT
1 ATATTTGTAACTAAAATTAATATT
*
91564605 ATATTTGTATCTAAAATTAATATT
1 ATATTTGTAACTAAAATTAATATT
91564629 ATATT
1 ATATT
91564634 ATAAAACGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.49
Consensus pattern (24 bp):
ATATTTGTAACTAAAATTAATATT
Found at i:91565347 original size:14 final size:15
Alignment explanation
Indices: 91565307--91565348 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
91565297 TAATTTGGAT
91565307 TAATTTATTTAAATA
1 TAATTTATTTAAATA
* *
91565322 TGATTTAATTAAA-A
1 TAATTTATTTAAATA
*
91565336 TAATTTTTTTAAA
1 TAATTTATTTAAA
91565349 GGGAAATAAT
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
14 11 0.50
15 11 0.50
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (15 bp):
TAATTTATTTAAATA
Found at i:91567670 original size:21 final size:21
Alignment explanation
Indices: 91567646--91567691 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
91567636 TAGAGCAGAT
*
91567646 GCAGCAGCGAAGGAGGCAGCG
1 GCAGCAGCGAAGGAGGCAGCA
91567667 GCAGCAGCGAAGGAGGCAGCA
1 GCAGCAGCGAAGGAGGCAGCA
91567688 GCAG
1 GCAG
91567692 AGCAGAAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.30, C:0.24, G:0.46, T:0.00
Consensus pattern (21 bp):
GCAGCAGCGAAGGAGGCAGCA
Found at i:91569717 original size:32 final size:31
Alignment explanation
Indices: 91569656--91569717 Score: 72
Period size: 32 Copynumber: 1.9 Consensus size: 31
91569646 AATTTGATTC
* *
91569656 TCAATTTAAAAAAAAAAACTCAAATTTGACCA
1 TCAATTTAAAAAAAAAAAC-AAAAGTTGACCA
91569688 TCAACTTTAAAAAAAAATAA-AAAAGTTGAC
1 TCAA-TTTAAAAAAAAA-AACAAAAGTTGAC
91569718 ATGATATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
32 12 0.46
33 12 0.46
34 2 0.08
ACGTcount: A:0.58, C:0.13, G:0.05, T:0.24
Consensus pattern (31 bp):
TCAATTTAAAAAAAAAAACAAAAGTTGACCA
Found at i:91575097 original size:10 final size:10
Alignment explanation
Indices: 91575078--91575127 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
91575068 TGAAATTCTA
91575078 AAAGATAAAT
1 AAAGATAAAT
91575088 ACAA-ATAAAT
1 A-AAGATAAAT
*
91575098 AAAGATAATT
1 AAAGATAAAT
91575108 AAAGATAAAT
1 AAAGATAAAT
91575118 GAAA-ATAAAT
1 -AAAGATAAAT
91575128 CCTAAAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:91578565 original size:132 final size:132
Alignment explanation
Indices: 91578343--91578582 Score: 356
Period size: 132 Copynumber: 1.8 Consensus size: 132
91578333 AGAGGCGATA
* * * * *
91578343 TTCGATGTTTGGCAATTCGGGGAATCGTGCCCTACCGTGCTGGGTTGCAATTTCTCGTTTGCTCA
1 TTCGATGTTTAGCAATTCGGGGAATAGTGCCCTACCGTGCCGGGTTGCAATTCCTCATTTGCTCA
* * *
91578408 AAATAATCGAATGTCTCTTTAGAATTTCATTCATGTTTTCTAAAAACTTTTTAAAACGAAGGAAA
66 AAATAATCGAATATCCCTTCAGAATTTCATTCATGTTTTCTAAAAACTTTTTAAAACGAAGGAAA
91578473 TG
131 TG
* *
91578475 TTCGATGTTTAGCAATTCGGGGAATAGTGCCCTATCGTGCCGGGTTGCAATCTCCT-ATTTGTTC
1 TTCGATGTTTAGCAATTCGGGGAATAGTGCCCTACCGTGCCGGGTTGCAAT-TCCTCATTTGCTC
* *
91578539 AAAATAATCGAATATCCCTTCGGAATTTCATTCGTGTTTTCTAA
65 AAAATAATCGAATATCCCTTCAGAATTTCATTCATGTTTTCTAA
91578583 GGCGAGGCAA
Statistics
Matches: 95, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
132 92 0.97
133 3 0.03
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.37
Consensus pattern (132 bp):
TTCGATGTTTAGCAATTCGGGGAATAGTGCCCTACCGTGCCGGGTTGCAATTCCTCATTTGCTCA
AAATAATCGAATATCCCTTCAGAATTTCATTCATGTTTTCTAAAAACTTTTTAAAACGAAGGAAA
TG
Found at i:91585428 original size:84 final size:83
Alignment explanation
Indices: 91585284--91585449 Score: 305
Period size: 84 Copynumber: 2.0 Consensus size: 83
91585274 AATTTGTTCC
91585284 ATAGAGTACTATGCGTTTCACATCTTAATTTTTTCCTAGATCATTTAACTTCATTTCCATACCAA
1 ATAGAGTACTATGCGTTTCACATCTTAATTTTTTCCTAGATCATTTAACTTCATTTCCATACCAA
91585349 TAATTTTCTTAATTAAAG
66 TAATTTTCTTAATTAAAG
* *
91585367 ATAGAGTACTATGCGTTTCATATCTTAATTTTTTTCCTAGATCATTTAACTTCATTTCCATATCA
1 ATAGAGTACTATGCGTTTCACATCTTAA-TTTTTTCCTAGATCATTTAACTTCATTTCCATACCA
91585432 ATAATTTTCTTAATTAAA
65 ATAATTTTCTTAATTAAA
91585450 AATTACATCT
Statistics
Matches: 80, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
83 27 0.34
84 53 0.66
ACGTcount: A:0.31, C:0.17, G:0.07, T:0.45
Consensus pattern (83 bp):
ATAGAGTACTATGCGTTTCACATCTTAATTTTTTCCTAGATCATTTAACTTCATTTCCATACCAA
TAATTTTCTTAATTAAAG
Found at i:91588273 original size:210 final size:209
Alignment explanation
Indices: 91587894--91588516 Score: 899
Period size: 210 Copynumber: 3.0 Consensus size: 209
91587884 AGTTCTTACG
* * * *
91587894 AGGCTTAAGCTTTTGAATTTAAGAGGCTGCAAAAGTCTGAGGAGTTTTCCAACCAAAATTGGAAT
1 AGGCTTAAG-TTTTGAATTTAAAAGACTGCAAAAGTCTTAGGAGTCTTCCAACCAAAATTGGAAT
*
91587959 GGAATCTCTTGAAATGTTAATTCTTTCAGGTTGCTCAAAAT-TTCAAAGCTTTCCAGAGATTGAT
65 GGAATCTCTTGAAAAGTTAATTCTTTCAGGTTGCTC-AAATCTTCAAAGCTTTCCAGAGATTGAT
* ** *
91588023 GGGAAAATGGAATGTTTGTTGGAGCTTTGTTTTTATGGGACAAAAATTAAAGAGCTACCTTCTTC
129 GGGAAAATGGAATGTTTGTTGGAGCTTTATTTAGATGGGACAAACATTAAAGAGCTACCTTCTTC
91588088 AATCGGAAATCTCAGA
194 AATCGGAAATCTCAGA
* *
91588104 AGGCTTGAAGTTTTGAATTTAAAAGACTGTAAAAGTTTTAGGAGTCTTCCAACCAAAATTGGAAT
1 AGGCTT-AAGTTTTGAATTTAAAAGACTGCAAAAGTCTTAGGAGTCTTCCAACCAAAATTGGAAT
* *
91588169 GGAATCTCTTGAAAAGTTAATTCTTTCAGGTTGCTCAAATCTTCAAAGCCTGCCAGAGATTGATG
65 GGAATCTCTTGAAAAGTTAATTCTTTCAGGTTGCTCAAATCTTCAAAGCTTTCCAGAGATTGATG
* *
91588234 GGAAAATGGAATGTTTATTGGAGCTTTATTTAGATGGGACAAACATTAAAGATCTACCTTCTTCA
130 GGAAAATGGAATGTTTGTTGGAGCTTTATTTAGATGGGACAAACATTAAAGAGCTACCTTCTTCA
*
91588299 ATCGAAAATCTCAGA
195 ATCGGAAATCTCAGA
* * *
91588314 AGACTTAAAGTTTTGAATCTAAAAGACTGCAAAAGTCTTAGGAGTCTTCCAATCAAAATTGGAAT
1 AGGCTT-AAGTTTTGAATTTAAAAGACTGCAAAAGTCTTAGGAGTCTTCCAACCAAAATTGGAAT
* * * *
91588379 GGAATCTCTTAAAAAGTTAATTCTTTCAGGTTGCTCCAATCTTAAAAGGTTTCCAGAGATTGATG
65 GGAATCTCTTGAAAAGTTAATTCTTTCAGGTTGCTCAAATCTTCAAAGCTTTCCAGAGATTGATG
* ** * * ***
91588444 GCAAAATGGAATGCCTGCTAGAGCTTTATTTAGATGGGACGGCCATTAAAGAGCTACCTAT-TTC
130 GGAAAATGGAATGTTTGTTGGAGCTTTATTTAGATGGGACAAACATTAAAGAGCTACCT-TCTTC
*
91588508 AATTGGAAA
194 AATCGGAAA
91588517 CCTGAGCAGT
Statistics
Matches: 370, Mismatches: 40, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
209 4 0.01
210 362 0.98
211 4 0.01
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32
Consensus pattern (209 bp):
AGGCTTAAGTTTTGAATTTAAAAGACTGCAAAAGTCTTAGGAGTCTTCCAACCAAAATTGGAATG
GAATCTCTTGAAAAGTTAATTCTTTCAGGTTGCTCAAATCTTCAAAGCTTTCCAGAGATTGATGG
GAAAATGGAATGTTTGTTGGAGCTTTATTTAGATGGGACAAACATTAAAGAGCTACCTTCTTCAA
TCGGAAATCTCAGA
Found at i:91590972 original size:20 final size:22
Alignment explanation
Indices: 91590931--91590973 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
91590921 TTCTTATGAA
91590931 AATTTTATATTCTTTTAATTTT
1 AATTTTATATTCTTTTAATTTT
*
91590953 AATTTTA-ATT-TTTTATTTTT
1 AATTTTATATTCTTTTAATTTT
91590973 A
1 A
91590974 TAGTTTTTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 10 0.50
21 3 0.15
22 7 0.35
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (22 bp):
AATTTTATATTCTTTTAATTTT
Found at i:91591825 original size:147 final size:147
Alignment explanation
Indices: 91591540--91591825 Score: 321
Period size: 147 Copynumber: 1.9 Consensus size: 147
91591530 TTTAGTCACA
* * * * *
91591540 TTTTTTTTAATACAAATGTTTAGAATTACTTATAGTCTCTCTTCAACCTTTAAATAGGAGGGTAA
1 TTTTTTTTAATACAAATGTCTAGAATTACTTACAGTCTCTCTCCAACCTTTAAATAAGAGGATAA
** * *
91591605 ATAGGTTTCAACGCACTAGAAACCACAACCTCCTACATAAGCAACAATGTTGATACCAATCAAGT
66 ATAGGTTTCAACGCACTAGAAACCACAACCTCCTACATAAGCAACAATGTCAATACCAACCAACT
*
91591670 TAGAACTCAATCATAAT
131 AAGAACTCAATCATAAT
*
91591687 TTTTTTTTAATACAAATGTCTAGAATTA-TCTGCAGTCTCT-TCCCAA-CTGTTAAATAAGAGGA
1 TTTTTTTTAATACAAATGTCTAGAATTACT-TACAGTCTCTCT-CCAACCT-TTAAATAAGAGGA
** * * ** * *
91591749 TAAATTTGTTTCAACGCACTCG-AACTCACATCCTCCTGTATAGGCAACAATGTCAATATCAACC
63 TAAATAGGTTTCAACGCACTAGAAAC-CACAACCTCCTACATAAGCAACAATGTCAATACCAACC
91591813 AAACTAAG-ACTCA
127 -AACTAAGAACTCA
91591826 GTCACAAATT
Statistics
Matches: 115, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
146 7 0.06
147 103 0.90
148 5 0.04
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.32
Consensus pattern (147 bp):
TTTTTTTTAATACAAATGTCTAGAATTACTTACAGTCTCTCTCCAACCTTTAAATAAGAGGATAA
ATAGGTTTCAACGCACTAGAAACCACAACCTCCTACATAAGCAACAATGTCAATACCAACCAACT
AAGAACTCAATCATAAT
Found at i:91593193 original size:19 final size:19
Alignment explanation
Indices: 91593169--91593214 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
91593159 GGGAAAGTCT
91593169 AATGCAAAT-AATGCAATG
1 AATGCAAATGAATGCAATG
* *
91593187 CAATGCAAATGCATGGAATG
1 -AATGCAAATGAATGCAATG
91593207 AATGCAAA
1 AATGCAAA
91593215 AGAAAGAGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.48, C:0.13, G:0.20, T:0.20
Consensus pattern (19 bp):
AATGCAAATGAATGCAATG
Found at i:91595534 original size:9 final size:9
Alignment explanation
Indices: 91595497--91595612 Score: 118
Period size: 9 Copynumber: 13.2 Consensus size: 9
91595487 GATAATATGT
91595497 TAGTAATAA
1 TAGTAATAA
91595506 TA-TAAT-A
1 TAGTAATAA
*
91595513 TAGTAATAG
1 TAGTAATAA
*
91595522 TAGTAGTAA
1 TAGTAATAA
91595531 TAGTAATAA
1 TAGTAATAA
91595540 -A--AATAA
1 TAGTAATAA
91595546 TAGTAATAAAA
1 TAGTAAT--AA
*
91595557 GTAGTACTAA
1 -TAGTAATAA
91595567 TAGTAATAA
1 TAGTAATAA
*
91595576 TAATAATAA
1 TAGTAATAA
91595585 TA-TAATAA
1 TAGTAATAA
91595593 TAGTAATAA
1 TAGTAATAA
*
91595602 TAATAATAA
1 TAGTAATAA
91595611 TA
1 TA
91595613 ATGACACAAG
Statistics
Matches: 90, Mismatches: 8, Indels: 18
0.78 0.07 0.16
Matches are distributed among these distances:
6 5 0.06
7 4 0.04
8 17 0.19
9 54 0.60
10 2 0.02
11 2 0.02
12 6 0.07
ACGTcount: A:0.57, C:0.01, G:0.09, T:0.33
Consensus pattern (9 bp):
TAGTAATAA
Found at i:91595547 original size:3 final size:3
Alignment explanation
Indices: 91595500--91595614 Score: 94
Period size: 3 Copynumber: 39.3 Consensus size: 3
91595490 AATATGTTAG
* * * * * *
91595500 TAA TAA T-A TAA T-A TAG TAA TAG TAG TAG TAA TAG TAA TAA AAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * *
91595546 TAG TAA TAA -AA GTAG TAC TAA TAG TAA TAA TAA TAA TAA T-A TAA
1 TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
91595590 TAA TAG TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
91595615 GACACAAGAA
Statistics
Matches: 90, Mismatches: 17, Indels: 10
0.77 0.15 0.09
Matches are distributed among these distances:
2 8 0.09
3 81 0.90
4 1 0.01
ACGTcount: A:0.57, C:0.01, G:0.09, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:91595708 original size:7 final size:7
Alignment explanation
Indices: 91595696--91595745 Score: 50
Period size: 7 Copynumber: 7.1 Consensus size: 7
91595686 TAATAAGGAT
91595696 AATAATA
1 AATAATA
91595703 AATAATA
1 AATAATA
91595710 AATAAT-
1 AATAATA
91595716 AATAAT-
1 AATAATA
* *
91595722 ACTAAATT
1 AAT-AATA
91595730 AATAATA
1 AATAATA
91595737 AAGTAATA
1 AA-TAATA
91595745 A
1 A
91595746 GCAAATAGAC
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
6 8 0.22
7 21 0.57
8 8 0.22
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (7 bp):
AATAATA
Found at i:91595732 original size:11 final size:11
Alignment explanation
Indices: 91595695--91595745 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
91595685 TTAATAAGGA
91595695 TAATAATAAA-
1 TAATAATAAAG
*
91595705 TAATAAATAATAA
1 TAAT-AATAA-AG
* *
91595718 TAATACTAAAT
1 TAATAATAAAG
91595729 TAATAATAAAG
1 TAATAATAAAG
91595740 TAATAA
1 TAATAA
91595746 GCAAATAGAC
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
10 4 0.12
11 21 0.62
12 5 0.15
13 4 0.12
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (11 bp):
TAATAATAAAG
Found at i:91595733 original size:20 final size:17
Alignment explanation
Indices: 91595694--91595745 Score: 70
Period size: 17 Copynumber: 3.0 Consensus size: 17
91595684 GTTAATAAGG
91595694 ATAATAATAAATAATAA
1 ATAATAATAAATAATAA
*
91595711 ATAATAAT-AATACTAA
1 ATAATAATAAATAATAA
91595727 ATTAATAATAAAGTAATAA
1 A-TAATAATAAA-TAATAA
91595746 GCAAATAGAC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
16 8 0.27
17 15 0.50
18 2 0.07
19 5 0.17
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (17 bp):
ATAATAATAAATAATAA
Found at i:91595945 original size:3 final size:3
Alignment explanation
Indices: 91595926--91596013 Score: 56
Period size: 3 Copynumber: 29.0 Consensus size: 3
91595916 AATAATGTAT
* * *
91595926 TAA TAA GAA TGA TAA TAA TAA -AA TGAGA TAA TAA TAA TAA TAT TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA T-A-A TAA TAA TAA TAA TAA TAA
* * * *
91595972 TAA AAA TAA -ACA TAA -AA GAAA TAG TAA TAA TAG TAA TAA TAA
1 TAA TAA TAA TA-A TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA
91596014 GACCGTAATA
Statistics
Matches: 65, Mismatches: 13, Indels: 14
0.71 0.14 0.15
Matches are distributed among these distances:
2 5 0.08
3 53 0.82
4 5 0.08
5 2 0.03
ACGTcount: A:0.64, C:0.01, G:0.08, T:0.27
Consensus pattern (3 bp):
TAA
Found at i:91596166 original size:12 final size:11
Alignment explanation
Indices: 91596140--91596191 Score: 59
Period size: 12 Copynumber: 4.4 Consensus size: 11
91596130 GAAATAACAG
*
91596140 TAATAAAAACAA
1 TAATAATAA-AA
91596152 TAATAATAAATA
1 TAATAATAAA-A
91596164 TAATAATAGAAA
1 TAATAATA-AAA
91596176 TAATAATGAAAA
1 TAATAAT-AAAA
91596188 TAAT
1 TAAT
91596192 TAATTTGAGA
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
11 1 0.03
12 32 0.89
13 3 0.08
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (11 bp):
TAATAATAAAA
Found at i:91596181 original size:15 final size:15
Alignment explanation
Indices: 91596124--91596182 Score: 61
Period size: 15 Copynumber: 4.1 Consensus size: 15
91596114 GTCGATAAGG
*
91596124 ATAATAGAAATAACA
1 ATAATAGAAATAATA
* * *
91596139 GTAATAAAAACAATA
1 ATAATAGAAATAATA
91596154 ATAAT--AAAT-ATA
1 ATAATAGAAATAATA
91596166 ATAATAGAAATAATA
1 ATAATAGAAATAATA
91596181 AT
1 AT
91596183 GAAAATAATT
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
12 8 0.23
13 3 0.09
14 4 0.11
15 20 0.57
ACGTcount: A:0.66, C:0.03, G:0.05, T:0.25
Consensus pattern (15 bp):
ATAATAGAAATAATA
Found at i:91598472 original size:12 final size:12
Alignment explanation
Indices: 91598455--91598481 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
91598445 GAAAATAGGG
91598455 TTTTAGCGGCGT
1 TTTTAGCGGCGT
91598467 TTTTAGCGGCGT
1 TTTTAGCGGCGT
91598479 TTT
1 TTT
91598482 ATCAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.15, G:0.30, T:0.48
Consensus pattern (12 bp):
TTTTAGCGGCGT
Done.