Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 30 of 313
Found at i:10331880 original size:48 final size:48
Alignment explanation
Indices: 10331804--10332075 Score: 280
Period size: 48 Copynumber: 5.9 Consensus size: 48
10331794 TACCACGGTT
* *
10331804 ATACGTGTAACGTGGTGCTAAGTGGATATACTACGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* * * *
10331852 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* * * *
10331900 ATTCCT-TAACGTGGTACTAAGTGGATATACCACG---------GTT-
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* *
10331937 ATACGTGTAACGTGGTGCTAAGTGGATATACCATGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* * * *
10331985 ATCCATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* * * *
10332033 ATTCAT-TAACCTGGTGCTAAGTGGATATACCACGGTTAAACAT
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACAT
10332076 GTAACATGGT
Statistics
Matches: 185, Mismatches: 28, Indels: 23
0.78 0.12 0.10
Matches are distributed among these distances:
37 4 0.02
38 27 0.15
47 61 0.33
48 93 0.50
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.31
Consensus pattern (48 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
Found at i:10331927 original size:95 final size:95
Alignment explanation
Indices: 10331809--10332075 Score: 288
Period size: 95 Copynumber: 2.9 Consensus size: 95
10331799 CGGTTATACG
10331809 TGTAACGTGGTGCTAAGTGGATATACTACGATTACACATATTGATACATGTAACGTGGTGCTAAG
1 TGTAACGTGGTGCTAAGTGGATATACTACG-TTACACATATTGATACATGTAACGTGGTGCTAAG
* *
10331874 TGGATATGCCACGGTTACATATATCGATTCC-
65 TGGATATACCACGGTTACACATATCGA-TCCA
* ** *
10331905 T-TAACGTGGTACTAAGTGG--ATA-TAC----CAC-GGTT-ATACGTGTAACGTGGTGCTAAGT
1 TGTAACGTGGTGCTAAGTGGATATACTACGTTACACATATTGATACATGTAACGTGGTGCTAAGT
* * *
10331960 GGATATACCATGATTACACATATTGATCCA
66 GGATATACCACGGTTACACATATCGATCCA
* * * * *
10331990 TGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT-TAACCTGGTGCTAAG
1 TGTAACGTGGTGCTAAGTGGATATACTAC-GTTACACATATTGATACATGTAACGTGGTGCTAAG
*
10332054 TGGATATACCACGGTTAAACAT
65 TGGATATACCACGGTTACACAT
10332076 GTAACATGGT
Statistics
Matches: 138, Mismatches: 21, Indels: 25
0.75 0.11 0.14
Matches are distributed among these distances:
84 3 0.02
85 44 0.32
86 19 0.14
87 3 0.02
88 2 0.01
89 2 0.01
92 3 0.02
93 3 0.02
94 2 0.01
95 52 0.38
96 5 0.04
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (95 bp):
TGTAACGTGGTGCTAAGTGGATATACTACGTTACACATATTGATACATGTAACGTGGTGCTAAGT
GGATATACCACGGTTACACATATCGATCCA
Found at i:10332021 original size:133 final size:133
Alignment explanation
Indices: 10331778--10332098 Score: 552
Period size: 133 Copynumber: 2.4 Consensus size: 133
10331768 TGGAAAAACA
*
10331778 TGGTGCTAAGTGGATATACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATATACTACGATTA
1 TGGTGCTAAGTGGATATACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATATACCACGATTA
*
10331843 CACATATTGATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTCCTTA
66 CACATATTGATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTCATTA
*
10331908 ACG
131 ACC
* *
10331911 TGGTACTAAGTGGATATACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATATACCATGATTA
1 TGGTGCTAAGTGGATATACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATATACCACGATTA
* *
10331976 CACATATTGATCCATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTA
66 CACATATTGATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTCATTA
10332041 ACC
131 ACC
* * *
10332044 TGGTGCTAAGTGGATATACCACGGTTAAACATGTAACATGGTGCTAAGTGGATAT
1 TGGTGCTAAGTGGATATACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATAT
10332099 GACGTGGTTA
Statistics
Matches: 177, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
133 177 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (133 bp):
TGGTGCTAAGTGGATATACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATATACCACGATTA
CACATATTGATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTCATTA
ACC
Found at i:10335549 original size:47 final size:47
Alignment explanation
Indices: 10335471--10335881 Score: 750
Period size: 47 Copynumber: 8.7 Consensus size: 47
10335461 CCCTTCGGGA
* * * * * *
10335471 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
10335518 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
10335565 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
10335612 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
10335659 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
10335706 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
10335753 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
10335800 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
10335847 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
10335882 AGAATCCTAA
Statistics
Matches: 354, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 354 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:10338410 original size:116 final size:116
Alignment explanation
Indices: 10338270--10338508 Score: 406
Period size: 116 Copynumber: 2.1 Consensus size: 116
10338260 TTACCATATT
* * *
10338270 ACTATAACACACTTTTCTGGTAAGTCATGGTATGTATTACTAAATTATCAAGAGGTTATTCTTAA
1 ACTATAACACACTTTTCTAGTAAGTCATGGTATGTATTACCAAATTATCAAGAGGTTATTCTAAA
* *
10338335 TATAAGTTCTAATTAAACCATTCATTTTCTCATCATTTTCGTAGAAAATGA
66 TATAAGTTCTAATTAAACCATTCATTGTCTCATCATTTTCATAGAAAATGA
* *
10338386 ACTATAACACACTTTTCTATTAAGTCATGGTATGTATTACCAAATTATCGAGAGGTTATTCTAAA
1 ACTATAACACACTTTTCTAGTAAGTCATGGTATGTATTACCAAATTATCAAGAGGTTATTCTAAA
10338451 TATAAGTTCTAATTAAACCATTCATTGTCTCATCATTTTCATAGAAAATGA
66 TATAAGTTCTAATTAAACCATTCATTGTCTCATCATTTTCATAGAAAATGA
*
10338502 ATTATAA
1 ACTATAA
10338509 TTTTCATAAT
Statistics
Matches: 115, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
116 115 1.00
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (116 bp):
ACTATAACACACTTTTCTAGTAAGTCATGGTATGTATTACCAAATTATCAAGAGGTTATTCTAAA
TATAAGTTCTAATTAAACCATTCATTGTCTCATCATTTTCATAGAAAATGA
Found at i:10343297 original size:40 final size:40
Alignment explanation
Indices: 10343239--10343440 Score: 192
Period size: 40 Copynumber: 5.0 Consensus size: 40
10343229 GAAAAAGCTG
* * *
10343239 CTGAATGCACATGT-GTGCCCCTGTTTGTACTTTGGTACCC
1 CTGAATGCACA-GTCGTGCCCCTGTTTGCACTTTAGTGCCC
* * * *
10343279 CTGAATGCACAGACGTGCCCCTATATGCACTTCAGTGCCC
1 CTGAATGCACAGTCGTGCCCCTGTTTGCACTTTAGTGCCC
*
10343319 CTGAATGCACATTCGTGCCCCTGTTTGCACTTTAGTGCCC
1 CTGAATGCACAGTCGTGCCCCTGTTTGCACTTTAGTGCCC
* * * * * *
10343359 CTAAATGCACATTTGTGCCCCTGTTTGAACTTTGGT-TCC
1 CTGAATGCACAGTCGTGCCCCTGTTTGCACTTTAGTGCCC
* * * * * *
10343398 ATTAATCACACATTCGTGCTCCTGATTGCACTTTAGTGCCC
1 CTGAAT-GCACAGTCGTGCCCCTGTTTGCACTTTAGTGCCC
10343439 CT
1 CT
10343441 TTTATGCATT
Statistics
Matches: 132, Mismatches: 27, Indels: 5
0.80 0.16 0.03
Matches are distributed among these distances:
39 7 0.05
40 122 0.92
41 3 0.02
ACGTcount: A:0.18, C:0.30, G:0.19, T:0.33
Consensus pattern (40 bp):
CTGAATGCACAGTCGTGCCCCTGTTTGCACTTTAGTGCCC
Found at i:10343299 original size:20 final size:20
Alignment explanation
Indices: 10343239--10343381 Score: 112
Period size: 20 Copynumber: 7.2 Consensus size: 20
10343229 GAAAAAGCTG
10343239 CTGAATGCACATGT-GTGCCC
1 CTGAATGCACAT-TCGTGCCC
** * * * *
10343259 CTGTTTGTACTTTGGTACCC
1 CTGAATGCACATTCGTGCCC
**
10343279 CTGAATGCACAGACGTGCCC
1 CTGAATGCACATTCGTGCCC
10343299 CT-ATATGCAC-TTCAGTGCCC
1 CTGA-ATGCACATTC-GTGCCC
10343319 CTGAATGCACATTCGTGCCC
1 CTGAATGCACATTCGTGCCC
** * *
10343339 CTGTTTGCACTTTAGTGCCC
1 CTGAATGCACATTCGTGCCC
* *
10343359 CTAAATGCACATTTGTGCCC
1 CTGAATGCACATTCGTGCCC
10343379 CTG
1 CTG
10343382 TTTGAACTTT
Statistics
Matches: 93, Mismatches: 25, Indels: 10
0.73 0.20 0.08
Matches are distributed among these distances:
19 3 0.03
20 86 0.92
21 4 0.04
ACGTcount: A:0.18, C:0.31, G:0.20, T:0.30
Consensus pattern (20 bp):
CTGAATGCACATTCGTGCCC
Found at i:10369572 original size:34 final size:34
Alignment explanation
Indices: 10369521--10369605 Score: 100
Period size: 34 Copynumber: 2.5 Consensus size: 34
10369511 GTAGTGCAAA
* *
10369521 CAGTCTGGGCCTAAGCCC-TTAACAGTAGCAATAT
1 CAGTGTGGGCCTAAGCCCATT-ACAGTAACAATAT
* * *
10369555 CAGTGTGGGCCTCAGCCCATTACGGTAACAGTAT
1 CAGTGTGGGCCTAAGCCCATTACAGTAACAATAT
*
10369589 CAGTGTGGGCCTTAGCC
1 CAGTGTGGGCCTAAGCC
10369606 TAATTTAGTA
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
34 42 0.95
35 2 0.05
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.24
Consensus pattern (34 bp):
CAGTGTGGGCCTAAGCCCATTACAGTAACAATAT
Found at i:10378416 original size:78 final size:77
Alignment explanation
Indices: 10378334--10378526 Score: 233
Period size: 78 Copynumber: 2.5 Consensus size: 77
10378324 ATAGAAAAAG
* * * *
10378334 AATCCTGAAACATAATTATTCAATTGATTTCTATTTGAAATAAGAAATTGAACAAATCCTATTAA
1 AATCCTGAAACAGAATTGTTCAATTGATTTCTATTTGAAACAA-AAATAGAACAAATCCTATTAA
*
10378399 ACAGCGGGAATAA
65 ACAGCAGGAATAA
* * * * *
10378412 AATCCTAAAACAGAATTGTTTAATAGATTTTTTGTTTGAAACAAAAATAGAACAAATCCTATTAA
1 AATCCTGAAACAGAATTGTTCAATTGA-TTTCTATTTGAAACAAAAATAGAACAAATCCTATTAA
**
10378477 ATGGCAGGAATAA
65 ACAGCAGGAATAA
* *
10378490 AATCCTGAAATAGAATTGTTCAGTTGAATTTCTATTT
1 AATCCTGAAACAGAATTGTTCAATTG-ATTTCTATTT
10378527 ACAAACAATA
Statistics
Matches: 94, Mismatches: 19, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
78 80 0.85
79 14 0.15
ACGTcount: A:0.43, C:0.11, G:0.12, T:0.33
Consensus pattern (77 bp):
AATCCTGAAACAGAATTGTTCAATTGATTTCTATTTGAAACAAAAATAGAACAAATCCTATTAAA
CAGCAGGAATAA
Found at i:10380025 original size:303 final size:303
Alignment explanation
Indices: 10379478--10380084 Score: 1214
Period size: 303 Copynumber: 2.0 Consensus size: 303
10379468 ACCGTTGTAA
10379478 ATGTCTTATGGAGTAGAATATAAAACCATAATTTTATGATTCAAATCTCTACCTTTACTAATCAA
1 ATGTCTTATGGAGTAGAATATAAAACCATAATTTTATGATTCAAATCTCTACCTTTACTAATCAA
10379543 GAATATGCTTCAAAGCATCCAAAAAATATATTTTTTTCCAAACATTTTCATCATTTTGCTTTACT
66 GAATATGCTTCAAAGCATCCAAAAAATATATTTTTTTCCAAACATTTTCATCATTTTGCTTTACT
10379608 AAGAAAAATATCATATGTATGTGTTCATTACAACTACCAAACTTATGACATGACACTTATTTTCT
131 AAGAAAAATATCATATGTATGTGTTCATTACAACTACCAAACTTATGACATGACACTTATTTTCT
10379673 CAAAATATAATACCCATTTAATTTTTATGCATATTAAGTCATGGTCATTAAAGTGATCATTTTTT
196 CAAAATATAATACCCATTTAATTTTTATGCATATTAAGTCATGGTCATTAAAGTGATCATTTTTT
10379738 CCATTTATCACTACAAATTAAATAATATTTTCCAACATTTAAT
261 CCATTTATCACTACAAATTAAATAATATTTTCCAACATTTAAT
10379781 ATGTCTTATGGAGTAGAATATAAAACCATAATTTTATGATTCAAATCTCTACCTTTACTAATCAA
1 ATGTCTTATGGAGTAGAATATAAAACCATAATTTTATGATTCAAATCTCTACCTTTACTAATCAA
10379846 GAATATGCTTCAAAGCATCCAAAAAATATATTTTTTTCCAAACATTTTCATCATTTTGCTTTACT
66 GAATATGCTTCAAAGCATCCAAAAAATATATTTTTTTCCAAACATTTTCATCATTTTGCTTTACT
10379911 AAGAAAAATATCATATGTATGTGTTCATTACAACTACCAAACTTATGACATGACACTTATTTTCT
131 AAGAAAAATATCATATGTATGTGTTCATTACAACTACCAAACTTATGACATGACACTTATTTTCT
10379976 CAAAATATAATACCCATTTAATTTTTATGCATATTAAGTCATGGTCATTAAAGTGATCATTTTTT
196 CAAAATATAATACCCATTTAATTTTTATGCATATTAAGTCATGGTCATTAAAGTGATCATTTTTT
10380041 CCATTTATCACTACAAATTAAATAATATTTTCCAACATTTAAT
261 CCATTTATCACTACAAATTAAATAATATTTTCCAACATTTAAT
10380084 A
1 A
10380085 CATAATTTAT
Statistics
Matches: 304, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
303 304 1.00
ACGTcount: A:0.37, C:0.16, G:0.07, T:0.39
Consensus pattern (303 bp):
ATGTCTTATGGAGTAGAATATAAAACCATAATTTTATGATTCAAATCTCTACCTTTACTAATCAA
GAATATGCTTCAAAGCATCCAAAAAATATATTTTTTTCCAAACATTTTCATCATTTTGCTTTACT
AAGAAAAATATCATATGTATGTGTTCATTACAACTACCAAACTTATGACATGACACTTATTTTCT
CAAAATATAATACCCATTTAATTTTTATGCATATTAAGTCATGGTCATTAAAGTGATCATTTTTT
CCATTTATCACTACAAATTAAATAATATTTTCCAACATTTAAT
Found at i:10383895 original size:10 final size:10
Alignment explanation
Indices: 10383880--10383904 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
10383870 TGGAACTTTT
10383880 AAATTCTATC
1 AAATTCTATC
10383890 AAATTCTATC
1 AAATTCTATC
10383900 AAATT
1 AAATT
10383905 TACCAAGATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.44, C:0.16, G:0.00, T:0.40
Consensus pattern (10 bp):
AAATTCTATC
Found at i:10384753 original size:105 final size:105
Alignment explanation
Indices: 10384571--10384775 Score: 392
Period size: 105 Copynumber: 2.0 Consensus size: 105
10384561 GAGTCATAAA
10384571 AATAATTAATTTCCATATTCTATACTTATTATGTGTGTACATGAGTATGTGGAAGTTTCATTCTC
1 AATAATTAATTTCCATATTCTATACTTATTATGTGTGTACATGAGTATGTGGAAGTTTCATTCTC
10384636 CAATTTTGCCAATTGCATGAGAAATTATTAAATAGAGATC
66 CAATTTTGCCAATTGCATGAGAAATTATTAAATAGAGATC
* *
10384676 AATAATTGATTTCCATATTCTATGCTTATTATGTGTGTACATGAGTATGTGGAAGTTTCATTCTC
1 AATAATTAATTTCCATATTCTATACTTATTATGTGTGTACATGAGTATGTGGAAGTTTCATTCTC
10384741 CAATTTTGCCAATTGCATGAGAAATTATTAAATAG
66 CAATTTTGCCAATTGCATGAGAAATTATTAAATAG
10384776 GGATTGATAT
Statistics
Matches: 98, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
105 98 1.00
ACGTcount: A:0.32, C:0.12, G:0.15, T:0.40
Consensus pattern (105 bp):
AATAATTAATTTCCATATTCTATACTTATTATGTGTGTACATGAGTATGTGGAAGTTTCATTCTC
CAATTTTGCCAATTGCATGAGAAATTATTAAATAGAGATC
Found at i:10384988 original size:38 final size:38
Alignment explanation
Indices: 10384946--10385065 Score: 122
Period size: 38 Copynumber: 3.2 Consensus size: 38
10384936 TGAGGTATGT
10384946 AGGAAAAAAATAAAATAAGGAGTATGGGTAATAAAGAA
1 AGGAAAAAAATAAAATAAGGAGTATGGGTAATAAAGAA
* * ** ** * *
10384984 AGGAAAAACAAAAAAATGAGCG-GT-TGTTTGGT-ATG-T
1 AGGAAAAA-AATAAAATAAG-GAGTATGGGTAATAAAGAA
10385020 AGGAAAAAAATAAAATAAGGAGTATGGGTAATAAAGAA
1 AGGAAAAAAATAAAATAAGGAGTATGGGTAATAAAGAA
10385058 AGGAAAAA
1 AGGAAAAA
10385066 CAAAAAACTG
Statistics
Matches: 60, Mismatches: 16, Indels: 12
0.68 0.18 0.14
Matches are distributed among these distances:
34 1 0.02
35 11 0.18
36 12 0.20
37 4 0.07
38 20 0.33
39 11 0.18
40 1 0.02
ACGTcount: A:0.56, C:0.02, G:0.25, T:0.17
Consensus pattern (38 bp):
AGGAAAAAAATAAAATAAGGAGTATGGGTAATAAAGAA
Found at i:10385023 original size:74 final size:74
Alignment explanation
Indices: 10384939--10385086 Score: 278
Period size: 74 Copynumber: 2.0 Consensus size: 74
10384929 GGCCTAGTGA
10384939 GGTATGTAGGAAAAAAATAAAATAAGGAGTATGGGTAATAAAGAAAGGAAAAACAAAAAAATGAG
1 GGTATGTAGGAAAAAAATAAAATAAGGAGTATGGGTAATAAAGAAAGGAAAAACAAAAAAATGAG
10385004 CGGTTGTTT
66 CGGTTGTTT
*
10385013 GGTATGTAGGAAAAAAATAAAATAAGGAGTATGGGTAATAAAGAAAGGAAAAACAAAAAACTGAG
1 GGTATGTAGGAAAAAAATAAAATAAGGAGTATGGGTAATAAAGAAAGGAAAAACAAAAAAATGAG
*
10385078 TGGTTGTTT
66 CGGTTGTTT
10385087 CCCCCCCCAT
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
74 72 1.00
ACGTcount: A:0.51, C:0.03, G:0.26, T:0.21
Consensus pattern (74 bp):
GGTATGTAGGAAAAAAATAAAATAAGGAGTATGGGTAATAAAGAAAGGAAAAACAAAAAAATGAG
CGGTTGTTT
Found at i:10387247 original size:39 final size:39
Alignment explanation
Indices: 10387130--10387391 Score: 293
Period size: 39 Copynumber: 6.6 Consensus size: 39
10387120 GCTCCTCGTT
* * *
10387130 CAAATGCCTTCGGGACATAGCTCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
10387170 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
10387210 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
**
10387249 CAAATGCCTTCGGGCTTAGCCCATAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
*
10387288 CAAATGCCTTCGGGCTTAGCCTGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * *
10387327 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TCGCA
10387368 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
10387392 CATCATTCAA
Statistics
Matches: 197, Mismatches: 18, Indels: 15
0.86 0.08 0.07
Matches are distributed among these distances:
39 127 0.64
40 59 0.30
41 11 0.06
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:10387379 original size:117 final size:119
Alignment explanation
Indices: 10387130--10387388 Score: 309
Period size: 118 Copynumber: 2.2 Consensus size: 119
10387120 GCTCCTCGTT
* ** *
10387130 CAAATGCCTTCGGGACATAGCTCGGTTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAACCC
1 CAAATGCCTTCGGGACTTAGC-CCATAATTAGT-ATCTCGCACAAATGCCTTCGGGACTTAACCC
* *
10387193 GGATTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
64 GGAATTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTAGCA
* *
10387249 CAAATGCCTTCGGG-CTTAGCCCATAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCTGG
1 CAAATGCCTTCGGGACTTAGCCCATAATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGG
* * *
10387312 AATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
66 AATTAGTAACTCGCACAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TAGCA
10387368 C-AA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
10387389 GGACATCATT
Statistics
Matches: 122, Mismatches: 11, Indels: 15
0.82 0.07 0.10
Matches are distributed among these distances:
117 48 0.39
118 51 0.42
119 23 0.19
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (119 bp):
CAAATGCCTTCGGGACTTAGCCCATAATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGG
AATTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTAGCA
Found at i:10388235 original size:100 final size:100
Alignment explanation
Indices: 10388091--10388282 Score: 357
Period size: 100 Copynumber: 1.9 Consensus size: 100
10388081 TGTGCTCACT
10388091 CAAAAATGCTAAAAAGGAGGTTCAAGAATCATCAAGCCACCATCACATGCATCATTAACAAGCTT
1 CAAAAATGCTAAAAAGGAGGTTCAAGAATCATCAAGCCACCATCACATGCATCATTAACAAGCTT
*
10388156 CATATTTAGCATGCAATGGCATTAACACAAACACA
66 CAAATTTAGCATGCAATGGCATTAACACAAACACA
*
10388191 CAAAAATGCTAAAAAGGAGGTTCAAGAATCATCAAGCCATCATCACATGCATCATTAACAAGCTT
1 CAAAAATGCTAAAAAGGAGGTTCAAGAATCATCAAGCCACCATCACATGCATCATTAACAAGCTT
*
10388256 CAAATTTTGCATGCAATGGCATTAACA
66 CAAATTTAGCATGCAATGGCATTAACA
10388283 TGACCTCCAC
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
100 89 1.00
ACGTcount: A:0.42, C:0.22, G:0.14, T:0.22
Consensus pattern (100 bp):
CAAAAATGCTAAAAAGGAGGTTCAAGAATCATCAAGCCACCATCACATGCATCATTAACAAGCTT
CAAATTTAGCATGCAATGGCATTAACACAAACACA
Found at i:10388587 original size:13 final size:13
Alignment explanation
Indices: 10388569--10388593 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10388559 GGATGAGCAT
10388569 TTTTTTTTCTTTG
1 TTTTTTTTCTTTG
10388582 TTTTTTTTCTTT
1 TTTTTTTTCTTT
10388594 CTAGTTTCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.04, T:0.88
Consensus pattern (13 bp):
TTTTTTTTCTTTG
Found at i:10403894 original size:27 final size:27
Alignment explanation
Indices: 10403863--10404040 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
10403853 TAAATTGTAC
10403863 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
10403890 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
10403916 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
10403944 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
10403972 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
10403999 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
10404026 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
10404041 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:10403977 original size:82 final size:81
Alignment explanation
Indices: 10403864--10404019 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
10403854 AAATTGTACA
* *
10403864 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
10403928 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
10403945 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
10404010 TGCGAGTTGA
65 TGCGAATTGA
10404020 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:10404031 original size:82 final size:81
Alignment explanation
Indices: 10403860--10404040 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
10403850 GATTAAATTG
* *
10403860 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
10403925 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
10403941 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
10404005 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
10404023 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
10404041 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:10407338 original size:46 final size:46
Alignment explanation
Indices: 10407285--10407460 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
10407275 TATTTGGGCA
10407285 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
*** * * * *
10407331 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGA-GCG
* * *
10407378 TCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
10407424 -CCTGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
10407461 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
45 2 0.02
46 69 0.64
47 36 0.34
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:10407440 original size:93 final size:93
Alignment explanation
Indices: 10407281--10407452 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
10407271 GGGATATTTG
* *
10407281 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
10407346 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
10407374 GGCATCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGA
*
10407438 GTTGAGTCTGAGTTC
65 GTTGAGTCCGAGTTC
10407453 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:10418591 original size:26 final size:26
Alignment explanation
Indices: 10418562--10418612 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
10418552 TAATTACAAT
10418562 GCACTTGTAATACACAAAATAATAAC
1 GCACTTGTAATACACAAAATAATAAC
*
10418588 GCACTTGTAATACACGAAATAATAA
1 GCACTTGTAATACACAAAATAATAA
10418613 TATTTTTTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.49, C:0.18, G:0.10, T:0.24
Consensus pattern (26 bp):
GCACTTGTAATACACAAAATAATAAC
Found at i:10418639 original size:9 final size:10
Alignment explanation
Indices: 10418616--10418641 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
10418606 ATAATAATAT
10418616 TTTTTTGAAC
1 TTTTTTGAAC
10418626 TTTTTTGAAC
1 TTTTTTGAAC
10418636 TTTTTT
1 TTTTTT
10418642 TACAAACCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.15, C:0.08, G:0.08, T:0.69
Consensus pattern (10 bp):
TTTTTTGAAC
Found at i:10428609 original size:41 final size:40
Alignment explanation
Indices: 10428517--10428632 Score: 119
Period size: 41 Copynumber: 2.9 Consensus size: 40
10428507 TATGTGCGTT
* * * * *
10428517 TTGAGATAGCTTCGAG-TATATATAGCACTTATTGTGCGAG
1 TTGAGATAGCTTC-AGCTATGTATGGCACTTAGTGTCCAAG
10428557 TTG-GAATAGCTTCAGCTATGTATGGCACTTAGTGTCCAAGG
1 TTGAG-ATAGCTTCAGCTATGTATGGCACTTAGTGTCCAA-G
* * *
10428598 TTGAGATAGCTTCGGCTATGAAAGGCACTTAGTGT
1 TTGAGATAGCTTCAGCTATGTATGGCACTTAGTGT
10428633 GCGAGATTAT
Statistics
Matches: 64, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
39 3 0.05
40 29 0.45
41 31 0.48
42 1 0.02
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.33
Consensus pattern (40 bp):
TTGAGATAGCTTCAGCTATGTATGGCACTTAGTGTCCAAG
Found at i:10428648 original size:41 final size:39
Alignment explanation
Indices: 10428541--10428653 Score: 109
Period size: 41 Copynumber: 2.8 Consensus size: 39
10428531 AGTATATATA
* * * * *
10428541 GCACTTATTGTGCGAGTTGGAATAGCTTCAGCTATGTATG
1 GCACTTAGTGTGCGAGTT-AAATAGCTTCGGCTATGAAAG
* * *
10428581 GCACTTAGTGTCCAAGGTTGAGATAGCTTCGGCTATGAAAG
1 GCACTTAGTGTGCGA-GTT-AAATAGCTTCGGCTATGAAAG
10428622 GCACTTAGTGTGCGAGATTATAATAGCTTCGG
1 GCACTTAGTGTGCGAG-TTA-AATAGCTTCGG
10428654 TTAAGTTTTA
Statistics
Matches: 59, Mismatches: 11, Indels: 5
0.79 0.15 0.07
Matches are distributed among these distances:
40 14 0.24
41 45 0.76
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (39 bp):
GCACTTAGTGTGCGAGTTAAATAGCTTCGGCTATGAAAG
Found at i:10430658 original size:28 final size:28
Alignment explanation
Indices: 10430618--10430696 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
10430608 GCAATCAAAT
* *
10430618 ATGGCACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
10430646 ATGGCACTTAGTGTGCGAGATATTGATA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
10430674 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
10430697 CGAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:10434417 original size:30 final size:30
Alignment explanation
Indices: 10434383--10434538 Score: 191
Period size: 30 Copynumber: 5.4 Consensus size: 30
10434373 AACCAAAATG
* *
10434383 AGAATCAAAATCAGAATCAGTAACAGGATC
1 AGAATCAGAATCAGAATCAGTAACAGAATC
*
10434413 AGAATCAGAATCA-ATATTAGTAACAGAATC
1 AGAATCAGAATCAGA-ATCAGTAACAGAATC
*
10434443 AGAATCAGAATCAGAATTAGGT----G-A-C
1 AGAATCAGAATCAGAATCA-GTAACAGAATC
10434468 AGAATCAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATCAGTAACAGAATC
* *
10434498 AGAATCAGAATCAGTATTAGTAACAGAATC
1 AGAATCAGAATCAGAATCAGTAACAGAATC
10434528 AGAATCAGAAT
1 AGAATCAGAAT
10434539 TACGTGAGAG
Statistics
Matches: 111, Mismatches: 6, Indels: 18
0.82 0.04 0.13
Matches are distributed among these distances:
24 2 0.02
25 19 0.17
26 1 0.01
27 1 0.01
28 1 0.01
29 2 0.02
30 82 0.74
31 3 0.03
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (30 bp):
AGAATCAGAATCAGAATCAGTAACAGAATC
Found at i:10434480 original size:79 final size:79
Alignment explanation
Indices: 10434391--10434563 Score: 235
Period size: 79 Copynumber: 2.2 Consensus size: 79
10434381 TGAGAATCAA
* *
10434391 AATCAGAATCAGTAA-CAGGATCAGAATCAGAATCA-ATATTAGTAACAG-AATCAGAATCAGAA
1 AATCAGAATCAG-AATCAGGAACAGAATCAGAATCAGA-ATCAGTAACAGTAA-CAGAATCAGAA
*
10434453 TCAGAATTAGGTGACAG
63 TCAGAATTACGTGACAG
* **
10434470 AATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAATCA
1 AATCAGAATCAGAATCAGGAACAGAATCAGAATCAGAATCAGTAACAGTAACAGAATCAGAATCA
*
10434535 GAATTACGTGAGAG
66 GAATTACGTGACAG
10434549 AATCAGAATCAGAAT
1 AATCAGAATCAGAAT
10434564 GTGAATGCAA
Statistics
Matches: 84, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
78 2 0.02
79 79 0.94
80 3 0.04
ACGTcount: A:0.47, C:0.14, G:0.18, T:0.20
Consensus pattern (79 bp):
AATCAGAATCAGAATCAGGAACAGAATCAGAATCAGAATCAGTAACAGTAACAGAATCAGAATCA
GAATTACGTGACAG
Found at i:10434556 original size:85 final size:84
Alignment explanation
Indices: 10434383--10434563 Score: 258
Period size: 85 Copynumber: 2.1 Consensus size: 84
10434373 AACCAAAATG
* *
10434383 AGAATCAAAATCAGAATCAGTAACAGGATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
* *
10434448 CAGAATCAGAATTAGGTGAC
66 CAGAATCAG-ATGAGGTAAC
*
10434468 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
*
10434533 CAGAATTACG-TGAGAG-AATC
66 CAGAATCA-GATGAG-GTAA-C
10434553 AGAATCAGAAT
1 AGAATCAGAAT
10434564 GTGAATGCAA
Statistics
Matches: 87, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
84 4 0.05
85 82 0.94
86 1 0.01
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (84 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
CAGAATCAGATGAGGTAAC
Found at i:10434558 original size:6 final size:6
Alignment explanation
Indices: 10434383--10434538 Score: 144
Period size: 6 Copynumber: 25.8 Consensus size: 6
10434373 AACCAAAATG
* * *
10434383 AGAATC AAAATC AGAATC AGTAA-C AGGATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
10434431 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* *
10434480 AGAATC AGTAA-C AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
10434528 AGAATC AGAAT
1 AGAATC AGAAT
10434539 TACGTGAGAG
Statistics
Matches: 123, Mismatches: 14, Indels: 26
0.75 0.09 0.16
Matches are distributed among these distances:
5 9 0.07
6 104 0.85
7 8 0.07
8 2 0.02
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:10434761 original size:27 final size:27
Alignment explanation
Indices: 10434705--10434762 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
10434695 GTGACATAGT
* * *
10434705 CACCAGATACAGATATTATGGCAGAGC
1 CACCAGATACAGATAATATGGCAAACC
*
10434732 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATATGGCAAACC
10434759 CACC
1 CACC
10434763 TAAGAGAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.38, C:0.28, G:0.19, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATATGGCAAACC
Found at i:10435144 original size:27 final size:26
Alignment explanation
Indices: 10435065--10435147 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
10435055 TCGATCGGTC
* * *
10435065 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
10435091 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
10435118 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
10435145 AAC
1 AAC
10435148 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:10435375 original size:27 final size:26
Alignment explanation
Indices: 10435345--10435532 Score: 189
Period size: 27 Copynumber: 7.0 Consensus size: 26
10435335 AGGGGCAAAA
* *
10435345 TGGTAATTTTACCCCACAAGGGTATCT
1 TGGTAATTCTACCCTACAAGGGTAT-T
*
10435372 TGGTAATTCTACCCTACAGGGGTATT
1 TGGTAATTCTACCCTACAAGGGTATT
*
10435398 TCGGTATTTCTACCCTACAAGGGTATT
1 T-GGTAATTCTACCCTACAAGGGTATT
* *
10435425 TCGATAATTCTACCCTACAGGGGTATTT
1 T-GGTAATTCTACCCTACAAGGGTA-TT
* *
10435453 TGGTAATTCTATCCTATAAGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTA-TT
* * * *
10435480 TAGTAATCCTACCCTATAGGGGTATT
1 TGGTAATTCTACCCTACAAGGGTATT
* *
10435506 TCGGAAATTCTA-CCTACAGGGGTATT
1 T-GGTAATTCTACCCTACAAGGGTATT
10435532 T
1 T
10435533 CAGTAATTTC
Statistics
Matches: 138, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
26 19 0.14
27 116 0.84
28 3 0.02
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (26 bp):
TGGTAATTCTACCCTACAAGGGTATT
Found at i:10435492 original size:81 final size:82
Alignment explanation
Indices: 10435348--10435532 Score: 232
Period size: 81 Copynumber: 2.3 Consensus size: 82
10435338 GGCAAAATGG
* * * * * * * *
10435348 TAATTTTACCCCACAAGGGTATCTTGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCC
1 TAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAAGGGTATTTCAGTAATCCTACCC
10435413 TACAAGGGTATTTC-GA
66 TACAAGGGTATTTCGGA
* * *
10435429 TAATTCTACCCTACAGGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTTAGTAATCCTACCC
1 TAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAAGGGTATTTCAGTAATCCTACCC
* *
10435494 TATAGGGGTATTTCGGA
66 TACAAGGGTATTTCGGA
10435511 -AATTCTA-CCTACAGGGGTATTT
1 TAATTCTACCCTACAGGGGTATTT
10435533 CAGTAATTTC
Statistics
Matches: 90, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
80 15 0.17
81 73 0.81
82 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.36
Consensus pattern (82 bp):
TAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAAGGGTATTTCAGTAATCCTACCC
TACAAGGGTATTTCGGA
Found at i:10435582 original size:27 final size:27
Alignment explanation
Indices: 10435545--10435927 Score: 430
Period size: 27 Copynumber: 14.2 Consensus size: 27
10435535 GTAATTTCAC
* * *
10435545 AATCAAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
10435572 AATTGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
10435599 AA-CTGAGGGTAAACCAGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * * * **
10435626 AATCAAGGATAAAATGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
10435653 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
10435680 AATCGAGGGTAAAACAATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
10435707 AA-CTGAGGGTAAAACGATAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* ** *
10435734 ATTCGAGGGTAAAATAGTAATTCTTTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
10435761 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* *
10435788 AATTGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
10435815 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * **
10435842 AATCGAGGGTAAAACAGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
10435869 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
10435896 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
10435923 AATCG
1 AATCG
10435928 GGAGTACTTT
Statistics
Matches: 302, Mismatches: 48, Indels: 12
0.83 0.13 0.03
Matches are distributed among these distances:
26 2 0.01
27 298 0.99
28 2 0.01
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:10440505 original size:28 final size:28
Alignment explanation
Indices: 10440471--10440534 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 28
10440461 GCAATCAAAT
10440471 ATGGCACTCAGTATACGAAATATTGAGA
1 ATGGCACTCAGTATACGAAATATTGAGA
* * * * *
10440499 ATGGCACTTAGTGTGCGAGATATTGATA
1 ATGGCACTCAGTATACGAAATATTGAGA
*
10440527 ATGACACT
1 ATGGCACT
10440535 TAGTGAGCAA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.28
Consensus pattern (28 bp):
ATGGCACTCAGTATACGAAATATTGAGA
Found at i:10440549 original size:28 final size:28
Alignment explanation
Indices: 10440488--10440552 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
10440478 TCAGTATACG
* * *
10440488 AAATATTGAGAATGGCACTTAGTGTGCG
1 AAATATTGAGAATGACACTTAGTGAGCA
* *
10440516 AGATATTGATAATGACACTTAGTGAGCA
1 AAATATTGAGAATGACACTTAGTGAGCA
10440544 AAATATTGA
1 AAATATTGA
10440553 ATGATTCAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.38, C:0.09, G:0.23, T:0.29
Consensus pattern (28 bp):
AAATATTGAGAATGACACTTAGTGAGCA
Found at i:10446321 original size:27 final size:27
Alignment explanation
Indices: 10446232--10446358 Score: 119
Period size: 27 Copynumber: 4.7 Consensus size: 27
10446222 GGACATTATC
* ** *
10446232 TGACCGTAATACCCCAATAGGCTAAAA
1 TGACTGTAATACCCCTGTAGGGTAAAA
***
10446259 TGACCACAATACCCCTGTAGGGTAAAA
1 TGACTGTAATACCCCTGTAGGGTAAAA
* * *
10446286 TAACCGTAATACCCTTGTAGGGTAAAA
1 TGACTGTAATACCCCTGTAGGGTAAAA
* * *
10446313 TGACTGTAATGCCTCTATAGGGTAAAA
1 TGACTGTAATACCCCTGTAGGGTAAAA
* *
10446340 TGATTGGAATACCCCTGTA
1 TGACTGTAATACCCCTGTA
10446359 TTGTAATATG
Statistics
Matches: 80, Mismatches: 20, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 80 1.00
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.24
Consensus pattern (27 bp):
TGACTGTAATACCCCTGTAGGGTAAAA
Found at i:10446563 original size:27 final size:27
Alignment explanation
Indices: 10446506--10446589 Score: 82
Period size: 27 Copynumber: 3.1 Consensus size: 27
10446496 ATGGAGGAAG
* *
10446506 TACT-GTACTGGTGACTATGTCAC-AT
1 TACTAGTACTGGTGGCTATGCCACAAT
* *
10446531 TCACTATTATTGGTGGCTATGCCACAAT
1 T-ACTAGTACTGGTGGCTATGCCACAAT
* * *
10446559 TACTAGTACTGGTGGCTTTGCTACATT
1 TACTAGTACTGGTGGCTATGCCACAAT
10446586 TACT
1 TACT
10446590 GTTCTAGTAG
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
25 1 0.02
26 3 0.06
27 40 0.85
28 3 0.06
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.38
Consensus pattern (27 bp):
TACTAGTACTGGTGGCTATGCCACAAT
Found at i:10446817 original size:33 final size:33
Alignment explanation
Indices: 10446779--10446842 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
10446769 CTAAGCCCAC
* * *
10446779 ACTGTTTCTGTATAGGGCTAAGGCCCAGACTAA
1 ACTGTTGCTGAATAGGACTAAGGCCCAGACTAA
**
10446812 ACTGTTGCTGAATAGGACTCTGGCCCAGACT
1 ACTGTTGCTGAATAGGACTAAGGCCCAGACT
10446843 GCTACTGTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (33 bp):
ACTGTTGCTGAATAGGACTAAGGCCCAGACTAA
Found at i:10449293 original size:29 final size:29
Alignment explanation
Indices: 10449254--10449332 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
10449244 CTTAATAATC
*
10449254 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
10449284 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
10449313 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
10449333 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:10453778 original size:70 final size:70
Alignment explanation
Indices: 10453665--10453804 Score: 246
Period size: 70 Copynumber: 2.0 Consensus size: 70
10453655 TTTTCCAGGC
*
10453665 AGTTGGCTAACTTACTCACTGTCACCTTAAAAATCATATCTTGAGTTTCATAACTCGAAAATCAG
1 AGTTGGCTAACTTACTCACTGTCACCTTAAAAATCATATCTTGAGTTTCACAACTCGAAAATCAG
10453730 TTTCA
66 TTTCA
*
10453735 AGTTGGCTAAC-TGCGTCACTGTCACCTTAAAAATCATATCTTGAGTTTCACAACTCGAAAATCA
1 AGTTGGCTAACTTAC-TCACTGTCACCTTAAAAATCATATCTTGAGTTTCACAACTCGAAAATCA
10453799 GTTTCA
65 GTTTCA
10453805 TGATTTTTCC
Statistics
Matches: 67, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
69 2 0.03
70 65 0.97
ACGTcount: A:0.32, C:0.22, G:0.13, T:0.33
Consensus pattern (70 bp):
AGTTGGCTAACTTACTCACTGTCACCTTAAAAATCATATCTTGAGTTTCACAACTCGAAAATCAG
TTTCA
Found at i:10455047 original size:37 final size:37
Alignment explanation
Indices: 10454997--10455075 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
10454987 TTATTACGAA
* * *
10454997 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
10455034 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
10455071 GTCTT
1 GTCTT
10455076 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:10455257 original size:47 final size:47
Alignment explanation
Indices: 10455194--10455776 Score: 1112
Period size: 47 Copynumber: 12.4 Consensus size: 47
10455184 CCCTTCGGGA
* * * * *
10455194 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
10455241 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
10455288 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
10455335 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
10455382 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
10455429 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
10455476 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
10455523 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
10455570 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
10455617 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
10455664 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
10455711 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
10455758 CTTATCACATATATACACT
1 CTTATCACATATATACACT
10455777 GTCTTGGCTG
Statistics
Matches: 529, Mismatches: 7, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 529 1.00
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:10459546 original size:40 final size:40
Alignment explanation
Indices: 10459338--10459600 Score: 300
Period size: 40 Copynumber: 6.6 Consensus size: 40
10459328 CCAGCATGAT
* * *
10459338 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
10459378 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
10459418 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
10459458 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
10459498 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAA
* *
10459539 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAA
*
10459579 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
10459601 CATCATTCGA
Statistics
Matches: 192, Mismatches: 26, Indels: 10
0.84 0.11 0.04
Matches are distributed among these distances:
39 3 0.02
40 169 0.88
41 20 0.10
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:10459947 original size:29 final size:29
Alignment explanation
Indices: 10459908--10459986 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
10459898 CTTAATAATC
*
10459908 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
10459938 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
10459967 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
10459987 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:10460029 original size:43 final size:43
Alignment explanation
Indices: 10459968--10460070 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
10459958 TGCATTTCAA
10459968 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
10460011 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
10460054 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
10460071 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:10461986 original size:37 final size:37
Alignment explanation
Indices: 10461936--10462014 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
10461926 TTATTACGAA
* * *
10461936 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
10461973 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
10462010 GTCTT
1 GTCTT
10462015 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:10462206 original size:47 final size:47
Alignment explanation
Indices: 10462132--10462258 Score: 218
Period size: 47 Copynumber: 2.7 Consensus size: 47
10462122 GCCCTTCGGG
*
10462132 ACTTATCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
10462180 ACTTTCACATTCATCCCATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
10462227 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
10462259 ATACTATCAT
Statistics
Matches: 74, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
47 70 0.95
48 4 0.05
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:10468374 original size:29 final size:29
Alignment explanation
Indices: 10468335--10468413 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
10468325 CTTAATAATC
*
10468335 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
10468365 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
* *
10468394 AGCCCGCACAGTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
10468414 ATCTCACAAC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
28 3 0.07
29 37 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:10476579 original size:27 final size:26
Alignment explanation
Indices: 10476544--10477119 Score: 160
Period size: 27 Copynumber: 21.3 Consensus size: 26
10476534 ATACCCCCAG
* *
10476544 TTGTGAAATTACCAAAGTACCCCCGAT
1 TTGTAAAATTACCAAA-TACCCTCGAT
* * *
10476571 TTATAAAATTACCCAAATATCTTCGAT
1 TTGTAAAATTA-CCAAATACCCTCGAT
10476598 TTGTAAAATTACCGAAATACCCTC-AGT
1 TTGTAAAATTACC-AAATACCCTCGA-T
* *
10476625 TTGCAAAATTACTGAAATACCCTCGAT
1 TTGTAAAATTAC-CAAATACCCTCGAT
** * *
10476652 TTGTAAAATTATAGAAATGCCCTCGAC
1 TTGTAAAATTA-CCAAATACCCTCGAT
* * *
10476679 TTGCAAAATTTCCAAAGTACCATCGAT
1 TTGTAAAATTACCAAA-TACCCTCGAT
* * **** * *
10476706 TTCTAGAATTACTGTTTTACTCTTGAT
1 TTGTAAAATTAC-CAAATACCCTCGAT
** * * ** **
10476733 TTACAGAATTACTATTTTACTATCGAT
1 TTGTAAAATTACCA-AATACCCTCGAT
* *** *
10476760 TTATAAAATTACCGTTTTACCCTTGAT
1 TTGTAAAATTACC-AAATACCCTCGAT
* * ***
10476787 TTATAGAATTACCGTTTTACCCTCGAT
1 TTGTAAAATTACC-AAATACCCTCGAT
* * * **
10476814 TTATAGAATTATCATTTTACCCTCGAT
1 TTGTAAAATTACCA-AATACCCTCGAT
** ****
10476841 TTACAAAATTATCGTTTTACCCTCG-T
1 TTGTAAAATTA-CCAAATACCCTCGAT
**
10476867 TT-TACAGAATTACCATTTTACCCTCGAT
1 TTGTA-A-AATTACCA-AATACCCTCGAT
* * * * *
10476895 TTATAAATTTACTAAAATACCCTTGGT
1 TTGTAAAATTAC-CAAATACCCTCGAT
**
10476922 TTACAAAATTACCAAAATACCCTCGAT
1 TTGTAAAATTACC-AAATACCCTCGAT
** * *
10476949 CAGTAAAATTACTAAAATA-CCTCTGGT
1 TTGTAAAATTAC-CAAATACCCTC-GAT
*
10476976 TTGTAAAATTACCAAAATACCC-CTGGT
1 TTGTAAAATTACC-AAATACCCTC-GAT
* *
10477003 TTGTAAAATTACTAAAATACCCT-TAGT
1 TTGTAAAATTAC-CAAATACCCTCGA-T
* **
10477030 TTGTACAATTACCAAAATACCC-CTGGC
1 TTGTAAAATTACC-AAATACCCTC-GAT
*
10477057 TTGTAAAATTACCAAAATACCC-CTAAT
1 TTGTAAAATTACC-AAATACCCTC-GAT
* * * *
10477084 TTGTGAAATTATCGAAATACTCTCGGT
1 TTGTAAAATTA-CCAAATACCCTCGAT
10477111 TTGTAAAAT
1 TTGTAAAAT
10477120 ATCGAAATAA
Statistics
Matches: 423, Mismatches: 95, Indels: 62
0.73 0.16 0.11
Matches are distributed among these distances:
25 1 0.00
26 15 0.04
27 390 0.92
28 15 0.04
29 2 0.00
ACGTcount: A:0.35, C:0.20, G:0.10, T:0.36
Consensus pattern (26 bp):
TTGTAAAATTACCAAATACCCTCGAT
Found at i:10476758 original size:54 final size:54
Alignment explanation
Indices: 10476696--10476897 Score: 208
Period size: 54 Copynumber: 3.7 Consensus size: 54
10476686 ATTTCCAAAG
* * *
10476696 TACCATCGATTTCTAGAATTACTGTTTTACTCTTGATTTACAGAATTACTATTT
1 TACCATCGATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACCATTT
* * * * *
10476750 TACTATCGATTTATAAAATTACCGTTTTACCCTTGATTTATAGAATTACCGTTT
1 TACCATCGATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACCATTT
* * * * * *
10476804 TACCCTCGATTTATAGAATTA-TCATTTTACCCTCGATTTACAAAATTATCGTTT
1 TACCATCGATTTATAGAATTACT-GTTTTACCCTTGATTTACAGAATTACCATTT
* * * ** *
10476858 TACCCTCGTTTTACAGAATTACCATTTTACCCTCGATTTA
1 TACCATCGATTTATAGAATTACTGTTTTACCCTTGATTTA
10476898 TAAATTTACT
Statistics
Matches: 126, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
54 126 1.00
ACGTcount: A:0.28, C:0.20, G:0.08, T:0.44
Consensus pattern (54 bp):
TACCATCGATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACCATTT
Found at i:10476898 original size:81 final size:81
Alignment explanation
Indices: 10476696--10476908 Score: 261
Period size: 81 Copynumber: 2.6 Consensus size: 81
10476686 ATTTCCAAAG
* * * * * *
10476696 TACCATCGATTT-CTAGAATTACTGTTTTACTCTTGATTTACAGAATTACTATTTTACTATCGAT
1 TACCCTCGATTTAC-AGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTACCATCGAT
*
10476760 TTATAAAATTACCGTTT
65 TTACAAAATTACCGTTT
* * *
10476777 TACCCTTGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTA-TCATTTTACCCTCGAT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACT-ATTTTACCATCGAT
*
10476841 TTACAAAATTATCGTTT
65 TTACAAAATTACCGTTT
* *
10476858 TACCCTCGTTTTACAGAATTACCATTTTACCCTCGATTTATA-AATTTACTA
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAA-TTACTA
10476909 AAATACCCTT
Statistics
Matches: 113, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
80 3 0.03
81 109 0.96
82 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.08, T:0.44
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTACCATCGATT
TACAAAATTACCGTTT
Found at i:10476916 original size:54 final size:54
Alignment explanation
Indices: 10476858--10477078 Score: 186
Period size: 54 Copynumber: 4.1 Consensus size: 54
10476848 ATTATCGTTT
*** *
10476858 TACCCTCGTTTTACAGAATTACCATTTTACCCTCGATTTATAAATTTACTAAAA
1 TACCCTCGTTTTACAGAATTACCAAAATACCCTCGATTTATAAAATTACTAAAA
* * * *
10476912 TACCCTTGGTTTACAAAATTACCAAAATACCCTCGA-TCAGTAAAATTACTAAAA
1 TACCCTCGTTTTACAGAATTACCAAAATACCCTCGATTTA-TAAAATTACTAAAA
* * *
10476966 TACCTCTGGTTTGTA-A-AATTACCAAAATACCC-CTGGTTTGTAAAATTACTAAAA
1 TACC-CTCGTTT-TACAGAATTACCAAAATACCCTC-GATTTATAAAATTACTAAAA
* ** * *
10477020 TACCCTTAGTTTGTAC--AATTACCAAAATACCC-CTGGCTTGTAAAATTACCAAAA
1 TACCC-TCGTTT-TACAGAATTACCAAAATACCCTC-GATTTATAAAATTACTAAAA
10477074 TACCC
1 TACCC
10477079 CTAATTTGTG
Statistics
Matches: 144, Mismatches: 16, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
53 4 0.03
54 131 0.91
55 7 0.05
56 2 0.01
ACGTcount: A:0.37, C:0.23, G:0.08, T:0.32
Consensus pattern (54 bp):
TACCCTCGTTTTACAGAATTACCAAAATACCCTCGATTTATAAAATTACTAAAA
Found at i:10476916 original size:81 final size:81
Alignment explanation
Indices: 10476755--10476934 Score: 229
Period size: 81 Copynumber: 2.2 Consensus size: 81
10476745 TATTTTACTA
* * * *
10476755 TCGATTTATAAAATTACCGTTTTACCCTTGATTTATAGAATTACCGTTTTACCCTCGATTTATAG
1 TCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAG
***
10476820 AATTATCATTTTACCC
66 AATTATCAAAATACCC
* *
10476836 TCGATTTACAAAATTATCGTTTTACCCTCGTTTTACAGAATTACCATTTTACCCTCGATTTATA-
1 TCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAG
10476900 AATT-TACTAAAATACCC
66 AATTAT-C-AAAATACCC
* *
10476917 TTGGTTTACAAAATTACC
1 TCGATTTACAAAATTACC
10476935 AAAATACCCT
Statistics
Matches: 85, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
79 1 0.01
80 5 0.06
81 79 0.93
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.41
Consensus pattern (81 bp):
TCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAG
AATTATCAAAATACCC
Found at i:10476943 original size:81 final size:81
Alignment explanation
Indices: 10476561--10476948 Score: 205
Period size: 81 Copynumber: 4.8 Consensus size: 81
10476551 ATTACCAAAG
* * * * * * ** *
10476561 TACCCCCGATTTATAAAATTACCCAAATATCTTCGATTTGTAAAATTACCGAAATACCCTC-AGT
1 TACCCTCGATTTATAGAATTATCAAAATACCCTCGATTTACAAAATTACCAAAATACCCTCGA-T
* * * **
10476625 TTGCAAAATTACTGA-AA
65 TTACAGAATTAC-CATTT
* * * * * * * *
10476642 TACCCTCGATTTGTAAAATTAT-AGAAATGCCCTCGACTTGCAAAATTTCCAAAGTACCATCGAT
1 TACCCTCGATTTATAGAATTATCA-AAATACCCTCGATTTACAAAATTACCAAAATACCCTCGAT
**
10476706 TT-CTAGAATTACTGTTT
65 TTAC-AGAATTACCATTT
* * * *** ** * **** *
10476723 TACTCTTGATTTACAGAATTA-CTATTTTACTATCGATTTATAAAATTACCGTTTTACCCTTGAT
1 TACCCTCGATTTATAGAATTATC-AAAATACCCTCGATTTACAAAATTACCAAAATACCCTCGAT
* *
10476787 TTATAGAATTACCGTTT
65 TTACAGAATTACCATTT
*** * **** *
10476804 TACCCTCGATTTATAGAATTATCATTTTACCCTCGATTTACAAAATTATCGTTTTACCCTCGTTT
1 TACCCTCGATTTATAGAATTATCAAAATACCCTCGATTTACAAAATTACCAAAATACCCTCGATT
10476869 TACAGAATTACCATTT
66 TACAGAATTACCATTT
* *
10476885 TACCCTCGATTTATA-AATT-TACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGA
1 TACCCTCGATTTATAGAATTAT-C-AAAATACCCTCGATTTACAAAATTACCAAAATACCCTCGA
10476948 T
64 T
10476949 CAGTAAAATT
Statistics
Matches: 234, Mismatches: 63, Indels: 20
0.74 0.20 0.06
Matches are distributed among these distances:
79 1 0.00
80 6 0.03
81 224 0.96
82 3 0.01
ACGTcount: A:0.33, C:0.21, G:0.09, T:0.37
Consensus pattern (81 bp):
TACCCTCGATTTATAGAATTATCAAAATACCCTCGATTTACAAAATTACCAAAATACCCTCGATT
TACAGAATTACCATTT
Found at i:10476959 original size:81 final size:81
Alignment explanation
Indices: 10476888--10477080 Score: 210
Period size: 81 Copynumber: 2.4 Consensus size: 81
10476878 ACCATTTTAC
* * *
10476888 CCTC-GATTTATAAATTTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCAG
1 CCTCTGATTTATAAAATTACCAAAATACCCCTGGTTTACAAAATTACCAAAATACCCTCGATCAG
*
10476952 TAAAATTACTAAAATA
66 TAAAATTACCAAAATA
* * ** * * **
10476968 CCTCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCT-TAGTTT
1 CCTCTGATTTATAAAATTACCAAAATACCCCTGGTTTACAAAATTACCAAAATACCCTCGA-TCA
*
10477032 GTACAATTACCAAAATA
65 GTAAAATTACCAAAATA
* ** *
10477049 CCCCTGGCTTGTAAAATTACCAAAATACCCCT
1 CCTCTGATTTATAAAATTACCAAAATACCCCT
10477081 AATTTGTGAA
Statistics
Matches: 96, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
80 5 0.05
81 91 0.95
ACGTcount: A:0.38, C:0.22, G:0.08, T:0.31
Consensus pattern (81 bp):
CCTCTGATTTATAAAATTACCAAAATACCCCTGGTTTACAAAATTACCAAAATACCCTCGATCAG
TAAAATTACCAAAATA
Found at i:10477087 original size:54 final size:54
Alignment explanation
Indices: 10476898--10477103 Score: 234
Period size: 54 Copynumber: 3.8 Consensus size: 54
10476888 CCTCGATTTA
* * * ** * *
10476898 TAAATTTACTAAAATACCCTTGGTTTACAAAATTACCAAAATA-CCCTCGATCAG
1 TAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGAT-TG
* * *
10476952 TAAAATTACTAAAATACCTCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTG
1 TAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGATTG
* * *
10477006 TAAAATTACTAAAATACCCTTAGTTTGTACAATTACCAAAATACCCCTGGCTTG
1 TAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGATTG
* * * * *
10477060 TAAAATTACCAAAATACCCCTAATTTGTGAAATTATCGAAATAC
1 TAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATAC
10477104 TCTCGGTTTG
Statistics
Matches: 131, Mismatches: 20, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
54 125 0.95
55 6 0.05
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (54 bp):
TAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGATTG
Found at i:10477115 original size:81 final size:81
Alignment explanation
Indices: 10476926--10477094 Score: 223
Period size: 81 Copynumber: 2.1 Consensus size: 81
10476916 CTTGGTTTAC
* ** * * * *
10476926 AAAATTACCAAAATACCCTC-GATCAGTAAAATTACTAAAATACCTCTGGTTTGTAAAATTACCA
1 AAAATTACTAAAATACCCTCAG-TTTGTACAATTACCAAAATACCCCTGGCTTGTAAAATTACCA
**
10476990 AAATACCCCTGGTTTGT
65 AAATACCCCTAATTTGT
*
10477007 AAAATTACTAAAATACCCTTAGTTTGTACAATTACCAAAATACCCCTGGCTTGTAAAATTACCAA
1 AAAATTACTAAAATACCCTCAGTTTGTACAATTACCAAAATACCCCTGGCTTGTAAAATTACCAA
10477072 AATACCCCTAATTTGT
66 AATACCCCTAATTTGT
*
10477088 GAAATTA
1 AAAATTA
10477095 TCGAAATACT
Statistics
Matches: 76, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
81 75 0.99
82 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (81 bp):
AAAATTACTAAAATACCCTCAGTTTGTACAATTACCAAAATACCCCTGGCTTGTAAAATTACCAA
AATACCCCTAATTTGT
Found at i:10477239 original size:81 final size:80
Alignment explanation
Indices: 10477116--10477337 Score: 268
Period size: 81 Copynumber: 2.7 Consensus size: 80
10477106 TCGGTTTGTA
*
10477116 AAATATCGAAATAACCCTGTAGGGTAGAA-TAATCAAAATACCCCTGTAGGGTAGAATTACTAAA
1 AAATATCGAAAT-ACCCTGTAGGGTAGAATTACT-AAAATACCCCTGTAGGGTAGAATTACTAAA
*
10477180 ATAACCC-TGTAGGGTAG
64 AT-ACCCTTATAGGGTAG
* * * *
10477197 AATTATCGAAATACCCTTGTAAGGTAGAATTACTAAAATACCCCTGTAAGGTAGAAATACTAAAA
1 AAATATCGAAATACCC-TGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACTAAAA
10477262 TACCCTTATAGGGTAG
65 TACCCTTATAGGGTAG
* ** * * * *
10477278 AAATACCGAAATACCCCTGTAGGGTAGAATTACGGAGATACCCTTGTAGGATAAAATTAC
1 AAATATCGAAATA-CCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTAC
10477338 CATTTTGCCC
Statistics
Matches: 120, Mismatches: 17, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
80 8 0.07
81 106 0.88
82 6 0.05
ACGTcount: A:0.40, C:0.17, G:0.18, T:0.25
Consensus pattern (80 bp):
AAATATCGAAATACCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACTAAAAT
ACCCTTATAGGGTAG
Found at i:10477318 original size:27 final size:27
Alignment explanation
Indices: 10477124--10477337 Score: 225
Period size: 27 Copynumber: 7.9 Consensus size: 27
10477114 TAAAATATCG
* *
10477124 AAATAACCCTGTAGGGTAGAA-TAATCA
1 AAATACCCCTGTAGGGTAGAATTACT-A
10477151 AAATACCCCTGTAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACTA
* *
10477178 AAATAACCCTGTAGGGTAGAATTA-TCG
1 AAATACCCCTGTAGGGTAGAATTACT-A
* *
10477205 AAATACCCTTGTAAGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACTA
* *
10477232 AAATACCCCTGTAAGGTAGAAATACTA
1 AAATACCCCTGTAGGGTAGAATTACTA
* * * **
10477259 AAATACCCTTATAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACTA
**
10477286 AAATACCCCTGTAGGGTAGAATTACGG
1 AAATACCCCTGTAGGGTAGAATTACTA
* * * *
10477313 AGATACCCTTGTAGGATAAAATTAC
1 AAATACCCCTGTAGGGTAGAATTAC
10477338 CATTTTGCCC
Statistics
Matches: 161, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
26 1 0.01
27 156 0.97
28 4 0.02
ACGTcount: A:0.40, C:0.17, G:0.19, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACTA
Found at i:10477752 original size:31 final size:31
Alignment explanation
Indices: 10477714--10477791 Score: 95
Period size: 31 Copynumber: 2.5 Consensus size: 31
10477704 TTGCATTCAC
* *
10477714 ATTCTGATTTTGATTCTGTTACCTGATACCG
1 ATTCTGATTTTGATTCTGTCACCTAATACCG
* * *
10477745 ATTCTGATTTTGATTTTGTCACCTAATTCTG
1 ATTCTGATTTTGATTCTGTCACCTAATACCG
*
10477776 ATTCTGA-TATGATTCT
1 ATTCTGATTTTGATTCT
10477792 AGTTCTGATA
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
30 7 0.17
31 33 0.82
ACGTcount: A:0.21, C:0.17, G:0.14, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTCACCTAATACCG
Found at i:10481277 original size:43 final size:43
Alignment explanation
Indices: 10481177--10481343 Score: 135
Period size: 43 Copynumber: 3.9 Consensus size: 43
10481167 GGTTACCGAG
* * * * * *
10481177 ATGTGATTACATGTAAGACCATGTCTAGGACATTGACATTG-T
1 ATGTGATAACGTGTAAGACCATGTCTGGGATATTGGCATCGAT
* * *
10481219 ATTATGATAATGTGTAAGACCATGTCTGGGATATTGGCATCGTT
1 A-TGTGATAACGTGTAAGACCATGTCTGGGATATTGGCATCGAT
** * * *
10481263 AT-TCGATTTCGTGTAAGACCCTGTCTAGGAT-TGTGGCATTGAT
1 ATGT-GATAACGTGTAAGACCATGTCTGGGATAT-TGGCATCGAT
* *
10481306 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 ATGTGATAACGTGTAAGACCATGTCTGGGATATTGGCAT
10481344 TGTACGAGCT
Statistics
Matches: 98, Mismatches: 21, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
42 9 0.09
43 86 0.88
44 3 0.03
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.34
Consensus pattern (43 bp):
ATGTGATAACGTGTAAGACCATGTCTGGGATATTGGCATCGAT
Found at i:10485143 original size:77 final size:77
Alignment explanation
Indices: 10485010--10485153 Score: 175
Period size: 77 Copynumber: 1.9 Consensus size: 77
10485000 AATGCAAGTC
* * * * * *
10485010 TTAAATGATGCTAATGTATTAATGTAAAGCATTAACTAAAGACACATTCAATAAACAAGAA-ACA
1 TTAAAAGATGCTAATGTATTAATGCAAAACATAAAATAAAGACACATTCAACAAACAA-AACACA
10485074 TAAGGCACATTTT
65 TAAGGCACATTTT
** *
10485087 TTAAAAGATG-TAGATGTATTAATGCAAAACATAAAATAAAGATGCATTTAACAAACAAAACACA
1 TTAAAAGATGCTA-ATGTATTAATGCAAAACATAAAATAAAGACACATTCAACAAACAAAACACA
10485151 TAA
65 TAA
10485154 TGAAGTAGAT
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
76 4 0.07
77 52 0.93
ACGTcount: A:0.51, C:0.12, G:0.11, T:0.26
Consensus pattern (77 bp):
TTAAAAGATGCTAATGTATTAATGCAAAACATAAAATAAAGACACATTCAACAAACAAAACACAT
AAGGCACATTTT
Found at i:10490369 original size:380 final size:379
Alignment explanation
Indices: 10489656--10490417 Score: 1416
Period size: 380 Copynumber: 2.0 Consensus size: 379
10489646 AGTTGATAGT
10489656 AGAGTATACCTACGTGAAAACACATCGGTAATAATGTTTTCTTTACCTTGTTTGTACTTAATGAT
1 AGAGTATACCTACGTGAAAACACATCGGTAATAATGTTTTCTTTACCTTGTTTGTACTTAATGAT
* * *
10489721 ATAGGGAAAAGTTTCAAGAAACTCTACCAATTTTGCTTGTCGTTTGTTTAACTTATGCTGCCTCT
66 ATAGGGAAAAGTTTCAAGAAACTCTACCAATTTTGCGTGTCATTTGTTCAACTTATGCTGCCTCT
10489786 TCAAATACTTCAATGACTCATGATTAGTGTGAATAACGAATTTTTTTGCCAAAAGTAATGTTGCC
131 TCAAATACTTCAATGACTCATGATTAGTGTGAATAACGAATTTTTTTGCCAAAAGTAATGTTGCC
10489851 ATGTTTCCAAAGCTCTTACTGAGGCATATATTTCTTTTTCATAAGTTGGGTAATTCAAAGTACCA
196 ATGTTTCCAAAGCTCTTACTGAGGCATATATTTCTTTTTCATAAGTTGGGTAATTCAAAGTACCA
*
10489916 CCATTCAACTTCTCACTAAATTACACCACAGGACATCCTTCTTGATGCGATCATGCCCAAGACTG
261 CCATTCAACTTCTCACTAAATTACACCACAGGACATCCTTCTTGATGCGATCATGCCCAAGACTA
*
10489981 CTGCTGGTGAACCCACTGACCTTCCCTTAGGTCCGATCACTTGTGCATGAGCTA
326 CTGCTGGTGAACCCACTGACCTTCCCTTAGGTCCGATCACTCGTGCATGAGCTA
*
10490035 AGAGTATACCTACGTGAAAACGCATCGGTAATAATGTTTTCTTTACCTTGTTTGTACTTAATGAT
1 AGAGTATACCTACGTGAAAACACATCGGTAATAATGTTTTCTTTACCTTGTTTGTACTTAATGAT
*
10490100 ATAGGGAAAAGTTTCAAGAAACTCTACCCATTTTGCGTGTCATTTGTTCAACTTATGCTGCCTCT
66 ATAGGGAAAAGTTTCAAGAAACTCTACCAATTTTGCGTGTCATTTGTTCAACTTATGCTGCCTCT
* *
10490165 TCAAATACTTCAATGACTCATGATTAGTGTGAATAACGATTTTTTTTTGCCAAAGGTAATGTTGC
131 TCAAATACTTCAATGACTCATGATTAGTGTGAATAACGA-ATTTTTTTGCCAAAAGTAATGTTGC
10490230 CATGTTTCCAAAGCTCTTACTGAGGCATATATTTCTTTTTCATAAGTTGGGTAATTCAAAGTACC
195 CATGTTTCCAAAGCTCTTACTGAGGCATATATTTCTTTTTCATAAGTTGGGTAATTCAAAGTACC
*
10490295 ACCATTCAACTTCTCACTAAATTACACCACGGGACATCCTTCTTGATGCGATCATGCCCAAGACT
260 ACCATTCAACTTCTCACTAAATTACACCACAGGACATCCTTCTTGATGCGATCATGCCCAAGACT
*
10490360 ACTGCTGGTGAACCCATTGACCTTCCCTTAGGTCCGATCACTCGTGCATGAGCTA
325 ACTGCTGGTGAACCCACTGACCTTCCCTTAGGTCCGATCACTCGTGCATGAGCTA
10490415 AGA
1 AGA
10490418 AGTTCAAAGA
Statistics
Matches: 371, Mismatches: 11, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
379 164 0.44
380 207 0.56
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (379 bp):
AGAGTATACCTACGTGAAAACACATCGGTAATAATGTTTTCTTTACCTTGTTTGTACTTAATGAT
ATAGGGAAAAGTTTCAAGAAACTCTACCAATTTTGCGTGTCATTTGTTCAACTTATGCTGCCTCT
TCAAATACTTCAATGACTCATGATTAGTGTGAATAACGAATTTTTTTGCCAAAAGTAATGTTGCC
ATGTTTCCAAAGCTCTTACTGAGGCATATATTTCTTTTTCATAAGTTGGGTAATTCAAAGTACCA
CCATTCAACTTCTCACTAAATTACACCACAGGACATCCTTCTTGATGCGATCATGCCCAAGACTA
CTGCTGGTGAACCCACTGACCTTCCCTTAGGTCCGATCACTCGTGCATGAGCTA
Found at i:10494730 original size:47 final size:47
Alignment explanation
Indices: 10494678--10494940 Score: 400
Period size: 47 Copynumber: 5.6 Consensus size: 47
10494668 GATAATTGTG
* *
10494678 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
10494725 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
10494772 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
10494821 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
10494868 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
10494915 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
10494941 TCCCGAAGGG
Statistics
Matches: 198, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
47 152 0.77
49 46 0.23
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:10494785 original size:96 final size:96
Alignment explanation
Indices: 10494678--10494940 Score: 408
Period size: 96 Copynumber: 2.8 Consensus size: 96
10494668 GATAATTGTG
10494678 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
10494741 ATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
10494772 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
10494837 ATGTGATGAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * * *
10494868 ATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
10494931 ATGTGATAAG
66 ATGTGATAAG
10494941 TCCCGAAGGG
Statistics
Matches: 155, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
94 57 0.37
95 2 0.01
96 96 0.62
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:10494827 original size:143 final size:141
Alignment explanation
Indices: 10494678--10494940 Score: 418
Period size: 143 Copynumber: 1.9 Consensus size: 141
10494668 GATAATTGTG
*
10494678 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * *
10494743 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATA
66 GTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATA-A-ATGTGATAAGGCCTAATA
10494808 GCCGATGTGATGA
129 GCCGATGTGATGA
* *
10494821 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * *
10494886 GTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 GTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATAAATGTGATAAG
10494941 TCCCGAAGGG
Statistics
Matches: 110, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
141 10 0.09
142 1 0.01
143 99 0.90
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (141 bp):
ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATAAATGTGATAAGGCCTAATAGC
CGATGTGATGA
Found at i:10500665 original size:40 final size:40
Alignment explanation
Indices: 10500594--10500771 Score: 227
Period size: 40 Copynumber: 4.5 Consensus size: 40
10500584 AAACCAAGTA
* * *
10500594 CCTTCGGAATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
10500633 CCTTCTGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
10500673 CCTTCGGGACTTAGCCCGGGTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
10500713 CCTTTGGGACTTAGCCC-GAAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
10500753 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
10500772 TTATCATCCG
Statistics
Matches: 122, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
39 14 0.11
40 107 0.88
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:10503150 original size:39 final size:39
Alignment explanation
Indices: 10503078--10503248 Score: 234
Period size: 39 Copynumber: 4.4 Consensus size: 39
10503068 GGTCTTTAAC
* ** ** *
10503078 CCGGATATTTTTCCAGCACGTAGTTTGCAGACCTCAAGT
1 CCGGATATATTTCCAGCATATAGCCTGCAGACCTCATGT
* * *
10503117 CCAGATATATTTCCAGCATATAGCTTGCGGACCTCATGT
1 CCGGATATATTTCCAGCATATAGCCTGCAGACCTCATGT
**
10503156 CCGGATATATTTCCAGCATATAGCCTGTGGACCTCATGT
1 CCGGATATATTTCCAGCATATAGCCTGCAGACCTCATGT
10503195 CCGGATATATTTCCAGCATATAGCCTGCAGACCTCATGT
1 CCGGATATATTTCCAGCATATAGCCTGCAGACCTCATGT
*
10503234 CCGGACATATTTCCA
1 CCGGATATATTTCCA
10503249 ATCTTATATA
Statistics
Matches: 119, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 119 1.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.30
Consensus pattern (39 bp):
CCGGATATATTTCCAGCATATAGCCTGCAGACCTCATGT
Found at i:10513069 original size:31 final size:31
Alignment explanation
Indices: 10513031--10513092 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
10513021 TACAGCTCTA
10513031 CGACTTAGAGCATCGGCTACCACATTAGCCT
1 CGACTTAGAGCATCGGCTACCACATTAGCCT
10513062 CGACTTAGAGCATCGGCTACCACATTAGCCT
1 CGACTTAGAGCATCGGCTACCACATTAGCCT
10513093 TGCCTGGGTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (31 bp):
CGACTTAGAGCATCGGCTACCACATTAGCCT
Found at i:10517447 original size:28 final size:28
Alignment explanation
Indices: 10517415--10517485 Score: 83
Period size: 26 Copynumber: 2.6 Consensus size: 28
10517405 GTCTCTAGAT
*
10517415 ACAGATATTTTGTGGCAGTGCCACCAGA
1 ACAGATATTTTGTGGCAGGGCCACCAGA
**
10517443 ACAG--ATTACGTGGCAGGGCCACCAGA
1 ACAGATATTTTGTGGCAGGGCCACCAGA
**
10517469 ACAGATAAGTTGTGGCA
1 ACAGATATTTTGTGGCA
10517486 TAGCCACTAG
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
26 23 0.68
28 11 0.32
ACGTcount: A:0.31, C:0.21, G:0.28, T:0.20
Consensus pattern (28 bp):
ACAGATATTTTGTGGCAGGGCCACCAGA
Found at i:10524440 original size:100 final size:100
Alignment explanation
Indices: 10524252--10524511 Score: 274
Period size: 100 Copynumber: 2.6 Consensus size: 100
10524242 GCTAAATGAC
* * * *
10524252 CTTGTATATTCAGCCA-CATAGGTATGTACATATGTGATGTTGTATTGGATCTTGAATATTCAGC
1 CTTGTATATTCGGCCATC-TAGGTAAGTACATATGTGATGTTATATTTGATCTTGAATATTCAGC
* * * *
10524316 CATGAAGGTATGTACAAATTTGATATTATATTTGAAT
65 CATGAAGGTAAGCACAAATGTGATATTAAATTTG-AT
* * * * *
10524353 -TTGTATATTCGGCCATCTAAGTAAGTACATATGTGATGTTAAATTTGATCTTGCATATTCGGCT
1 CTTGTATATTCGGCCATCTAGGTAAGTACATATGTGATGTTATATTTGATCTTGAATATTCAGCC
* *
10524417 AT-ATAGTTAAGCACATATGTGATATTAAATTTGAT
66 ATGA-AGGTAAGCACAAATGTGATATTAAATTTGAT
* * * * * * *
10524452 CTTGCATATTCGGCCATATTGGTAAGCACATATGTGCTATTATATTTGATCTTGTATATT
1 CTTGTATATTCGGCCATCTAGGTAAGTACATATGTGATGTTATATTTGATCTTGAATATT
10524512 TGGCCAAATG
Statistics
Matches: 132, Mismatches: 24, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
99 3 0.02
100 128 0.97
101 1 0.01
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.41
Consensus pattern (100 bp):
CTTGTATATTCGGCCATCTAGGTAAGTACATATGTGATGTTATATTTGATCTTGAATATTCAGCC
ATGAAGGTAAGCACAAATGTGATATTAAATTTGAT
Found at i:10524517 original size:50 final size:50
Alignment explanation
Indices: 10524252--10524517 Score: 248
Period size: 50 Copynumber: 5.3 Consensus size: 50
10524242 GCTAAATGAC
* * * * * * ** *
10524252 CTTGTATATTCAGCCACATAGGTATGTACATATGTGATGTTGTATTGGAT
1 CTTGCATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTTGAT
* * * * * * *
10524302 CTTGAATATTCAGCCATGA-AGGTATGTACAAATTTGATATTATATTTGAAT
1 CTTGCATATTCGGCCAT-ATAGGTAAGCACATATGTGATATTAAATTTG-AT
* * * * *
10524353 -TTGTATATTCGGCCATCTAAGTAAGTACATATGTGATGTTAAATTTGAT
1 CTTGCATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTTGAT
* *
10524402 CTTGCATATTCGGCTATATAGTTAAGCACATATGTGATATTAAATTTGAT
1 CTTGCATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTTGAT
* * *
10524452 CTTGCATATTCGGCCATATTGGTAAGCACATATGTGCTATTATATTTGAT
1 CTTGCATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTTGAT
* *
10524502 CTTGTATATTTGGCCA
1 CTTGCATATTCGGCCA
10524518 AATGAGTGAT
Statistics
Matches: 182, Mismatches: 30, Indels: 8
0.83 0.14 0.04
Matches are distributed among these distances:
49 2 0.01
50 177 0.97
51 3 0.02
ACGTcount: A:0.29, C:0.12, G:0.18, T:0.40
Consensus pattern (50 bp):
CTTGCATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTTGAT
Found at i:10529736 original size:129 final size:129
Alignment explanation
Indices: 10529506--10529763 Score: 464
Period size: 129 Copynumber: 2.0 Consensus size: 129
10529496 GCTAAATTGT
* *
10529506 ATGTTTCTCAGATTGTGAGACTACACGGAGTACCTATTTCTACTGTGTCAGATAGAGATTCGAAA
1 ATGTTTCTCAAATTGTGAGACTACACAGAGTACCTATTTCTACTGTGTCAGATAGAGATTCGAAA
10529571 TTTACATCACAGTTTTGGAAGAAACTCGAAGATGCATTAGGTACTAAACTGAATTTTAGTACTA
66 TTTACATCACAGTTTTGGAAGAAACTCGAAGATGCATTAGGTACTAAACTGAATTTTAGTACTA
* *
10529635 ATGTTTCTCAAATTGTGAGACTACACAGAGTACCTATTTCTATTGTGTCAGATAGAGA-TCTGAC
1 ATGTTTCTCAAATTGTGAGACTACACAGAGTACCTATTTCTACTGTGTCAGATAGAGATTC-GAA
10529699 ATTTACATCACAGTTTTGGAAGAAACTCGAAGATGCATTAGGTACTAAACTGAATTTTAGTACTA
65 ATTTACATCACAGTTTTGGAAGAAACTCGAAGATGCATTAGGTACTAAACTGAATTTTAGTACTA
10529764 CTTTTCATCC
Statistics
Matches: 124, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
128 2 0.02
129 122 0.98
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.33
Consensus pattern (129 bp):
ATGTTTCTCAAATTGTGAGACTACACAGAGTACCTATTTCTACTGTGTCAGATAGAGATTCGAAA
TTTACATCACAGTTTTGGAAGAAACTCGAAGATGCATTAGGTACTAAACTGAATTTTAGTACTA
Found at i:10532222 original size:50 final size:50
Alignment explanation
Indices: 10532075--10532340 Score: 259
Period size: 50 Copynumber: 5.3 Consensus size: 50
10532065 GCTAAATGAC
* ** * * * *
10532075 CTTGTATATTTGGCCGCATAGGTATGTACATATGTGATGTTGTATTGGAT
1 CTTGTATATTCGGCCATATAGGTAAGTACATATGTGATATTATATTTGAT
* * * * *
10532125 CTTGAATATTCGACCATGA-AGGTATGTACAAATGAGATATTATATTTGAAT
1 CTTGTATATTCGGCCAT-ATAGGTAAGTACATATGTGATATTATATTTG-AT
* * *
10532176 -TTGTATATTCGGCCATATAAGTAAGTACATATGTGATGTTAAATTTGAT
1 CTTGTATATTCGGCCATATAGGTAAGTACATATGTGATATTATATTTGAT
* * * *
10532225 CTT-TCATATTCGTCTATATAGGTAAGCACATATGTGATATTAAATTTGAT
1 CTTGT-ATATTCGGCCATATAGGTAAGTACATATGTGATATTATATTTGAT
* * * * *
10532275 CTTGCATATTCGGCGATATAGGTAAGCACATATGTGCTATTATATTTGAC
1 CTTGTATATTCGGCCATATAGGTAAGTACATATGTGATATTATATTTGAT
*
10532325 CTTGTATATTTGGCCA
1 CTTGTATATTCGGCCA
10532341 AATGAGTGAT
Statistics
Matches: 178, Mismatches: 32, Indels: 12
0.80 0.14 0.05
Matches are distributed among these distances:
49 4 0.02
50 171 0.96
51 3 0.02
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.39
Consensus pattern (50 bp):
CTTGTATATTCGGCCATATAGGTAAGTACATATGTGATATTATATTTGAT
Found at i:10544805 original size:25 final size:25
Alignment explanation
Indices: 10544777--10544855 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
10544767 CTAATGGCCG
10544777 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
10544802 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
10544824 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
10544849 ATGTGAT
1 ATGTGAT
10544856 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:10544827 original size:47 final size:47
Alignment explanation
Indices: 10544761--10545142 Score: 665
Period size: 47 Copynumber: 8.1 Consensus size: 47
10544751 GAAATGATAG
10544761 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
10544808 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
10544855 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
10544904 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
10544951 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
10544998 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
10545045 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
10545092 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
10545139 TAAG
1 TAAG
10545143 TCCCGAAGGG
Statistics
Matches: 321, Mismatches: 12, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 275 0.86
49 46 0.14
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:10545019 original size:143 final size:141
Alignment explanation
Indices: 10544761--10545142 Score: 665
Period size: 143 Copynumber: 2.7 Consensus size: 141
10544751 GAAATGATAG
10544761 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
10544826 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
10544891 TATATATATGTGA
131 --TATATATGTGA
*
10544904 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
10544969 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
10545034 TATATATGTGA
131 TATATATGTGA
* * * * * *
10545045 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAAC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* *
10545110 GTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAG
10545143 TCCCGAAGGG
Statistics
Matches: 229, Mismatches: 10, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
141 100 0.44
143 129 0.56
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (141 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATGTGA
Found at i:10545317 original size:37 final size:37
Alignment explanation
Indices: 10545261--10545340 Score: 99
Period size: 37 Copynumber: 2.2 Consensus size: 37
10545251 CCGGGCTCTA
* * * *
10545261 AAGACCCGATGACTGCGTGTGG-GAATTTTGTCCGTGT
1 AAGACTCGATAACTGCGTGTGGAG-ATTATGTCCGGGT
*
10545298 AAGACTCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
10545335 AAGACT
1 AAGACT
10545341 TCGTAATAAG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (37 bp):
AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
Found at i:10560358 original size:29 final size:30
Alignment explanation
Indices: 10560316--10560378 Score: 110
Period size: 29 Copynumber: 2.1 Consensus size: 30
10560306 TTGGGTACAT
10560316 GGGCGTATGCCTAGGCCGTGTGTG-CACAC
1 GGGCGTATGCCTAGGCCGTGTGTGACACAC
*
10560345 GGGCGTATGCCTAGGTCGTGTGTGACACAC
1 GGGCGTATGCCTAGGCCGTGTGTGACACAC
10560375 GGGC
1 GGGC
10560379 CCCACTTGTA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 23 0.72
30 9 0.28
ACGTcount: A:0.14, C:0.25, G:0.40, T:0.21
Consensus pattern (30 bp):
GGGCGTATGCCTAGGCCGTGTGTGACACAC
Found at i:10561378 original size:45 final size:45
Alignment explanation
Indices: 10561321--10561486 Score: 260
Period size: 45 Copynumber: 3.7 Consensus size: 45
10561311 CACTGGCATT
* * *
10561321 TAGCTTGCTAGGCTCGAAGGCGCGAATAGTATCTCACCGGCATCA
1 TAGCCTGCTAGGCTCGAAGGCCCGAATAGTATTTCACCGGCATCA
*
10561366 TAGCCTGCTAGGCTCGAAGGCCTGAATAGTATTTCACCGGCATCA
1 TAGCCTGCTAGGCTCGAAGGCCCGAATAGTATTTCACCGGCATCA
* *
10561411 TAGCCTGCTAGGATCGAAGGCCCGAATAGTATTTCACCGACATCA
1 TAGCCTGCTAGGCTCGAAGGCCCGAATAGTATTTCACCGGCATCA
* *
10561456 TAGCTTGCTAGGCTCAAAGGCCCGAATAGTA
1 TAGCCTGCTAGGCTCGAAGGCCCGAATAGTA
10561487 CTGTACGATA
Statistics
Matches: 111, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 111 1.00
ACGTcount: A:0.27, C:0.26, G:0.25, T:0.23
Consensus pattern (45 bp):
TAGCCTGCTAGGCTCGAAGGCCCGAATAGTATTTCACCGGCATCA
Found at i:10564866 original size:55 final size:56
Alignment explanation
Indices: 10564801--10564915 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
10564791 AGCATGGCTG
* *
10564801 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
10564857 CCAGA-ACAGATATATGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
10564912 CCAG
1 CCAG
10564916 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.56
56 22 0.42
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:10564878 original size:27 final size:27
Alignment explanation
Indices: 10564826--10564915 Score: 119
Period size: 27 Copynumber: 3.2 Consensus size: 27
10564816 GTGACAGAGT
10564826 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
10564855 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
10564882 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
10564910 CACCAG
1 CACCAG
10564916 GACGCTTCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 24 0.44
28 24 0.44
29 7 0.13
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:10565205 original size:28 final size:28
Alignment explanation
Indices: 10565021--10565197 Score: 300
Period size: 28 Copynumber: 6.3 Consensus size: 28
10565011 AAATTAACCC
* * ** *
10565021 TAGGGGTATAAAGGTCATTTTGCACCCC
1 TAGGGGTATAATGGTAATTTTGCATACA
10565049 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
*
10565077 TAGGGGTATAATGGTAATTTTGCATGCA
1 TAGGGGTATAATGGTAATTTTGCATACA
10565105 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
10565133 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
10565161 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
10565189 TAGGGGTAT
1 TAGGGGTAT
10565198 TCTAGTAAAT
Statistics
Matches: 142, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 142 1.00
ACGTcount: A:0.30, C:0.09, G:0.27, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:10570503 original size:85 final size:88
Alignment explanation
Indices: 10570362--10570564 Score: 256
Period size: 85 Copynumber: 2.3 Consensus size: 88
10570352 CACCGGCATT
* *
10570362 TAGCCTACTAGGCTCGAA-GCCCG-ATA-TCATTTCACCAGCATTATAGCCTACTAGGCTCGAAG
1 TAGCCTGCTAGGCTCGAAGGCCCGAATAGTCATTTCACCAGCATCATAGCCTACTAGGCTCGAAG
*
10570424 GCCCGAATAGTATCTCAC-C-GA
66 GCCCGAATAGTATCTCACGCACA
* * *
10570445 TAGCCTGCTAGGCTCGAAGGCCCGAATAGT-ATTTCACCGGCATCATAGCCTGCTAGGCTTGAAG
1 TAGCCTGCTAGGCTCGAAGGCCCGAATAGTCATTTCACCAGCATCATAGCCTACTAGGCTCGAAG
*
10570509 GCCCGAATAGTATTTCACAGGCATCA
66 GCCCGAATAGTATCTCAC--GCA-CA
* *
10570535 TAGCCTGCTAGGCTCAAAGGCCTGAATAGT
1 TAGCCTGCTAGGCTCGAAGGCCCGAATAGT
10570565 GGTGTACGAT
Statistics
Matches: 103, Mismatches: 9, Indels: 9
0.85 0.07 0.07
Matches are distributed among these distances:
83 17 0.17
84 5 0.05
85 50 0.49
86 1 0.01
88 1 0.01
90 29 0.28
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.23
Consensus pattern (88 bp):
TAGCCTGCTAGGCTCGAAGGCCCGAATAGTCATTTCACCAGCATCATAGCCTACTAGGCTCGAAG
GCCCGAATAGTATCTCACGCACA
Found at i:10570509 original size:45 final size:44
Alignment explanation
Indices: 10570351--10570564 Score: 262
Period size: 45 Copynumber: 4.9 Consensus size: 44
10570341 TTTTATCAAA
* *
10570351 TCACCGGCATTTAGCCTACTAGGCTCGAA-GCCCG-ATA-TCATT
1 TCACCGGCATATAGCCTGCTAGGCTCGAAGGCCCGAATAGT-ATT
* * *
10570393 TCACCAGCATTATAGCCTACTAGGCTCGAAGGCCCGAATAGTATC
1 TCACCGGCA-TATAGCCTGCTAGGCTCGAAGGCCCGAATAGTATT
10570438 TCACC-G---ATAGCCTGCTAGGCTCGAAGGCCCGAATAGTATT
1 TCACCGGCATATAGCCTGCTAGGCTCGAAGGCCCGAATAGTATT
*
10570478 TCACCGGCATCATAGCCTGCTAGGCTTGAAGGCCCGAATAGTATT
1 TCACCGGCAT-ATAGCCTGCTAGGCTCGAAGGCCCGAATAGTATT
* * *
10570523 TCACAGGCATCATAGCCTGCTAGGCTCAAAGGCCTGAATAGT
1 TCACCGGCAT-ATAGCCTGCTAGGCTCGAAGGCCCGAATAGT
10570565 GGTGTACGAT
Statistics
Matches: 153, Mismatches: 10, Indels: 15
0.86 0.06 0.08
Matches are distributed among these distances:
40 37 0.24
41 1 0.01
42 8 0.05
43 19 0.12
44 6 0.04
45 81 0.53
46 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (44 bp):
TCACCGGCATATAGCCTGCTAGGCTCGAAGGCCCGAATAGTATT
Found at i:10574506 original size:24 final size:22
Alignment explanation
Indices: 10574465--10574566 Score: 82
Period size: 24 Copynumber: 4.4 Consensus size: 22
10574455 ACATGGCCAA
10574465 TAAGCTCATAATGAGCTGATAACAG
1 TAAGCTCAT--TGAGCTGAT-ACAG
*
10574490 TAAGCTCGATTGAGCTGGAAACGAG
1 TAAGCTC-ATTGAGCT-GATAC-AG
*
10574515 -AAGCTCTATTGAGCT-ATACAT
1 TAAGCTC-ATTGAGCTGATACAG
* *
10574536 TAAGCTCTTTCGAGCTGATTCAG
1 TAAGCTCATT-GAGCTGATACAG
10574559 TAAGCTCA
1 TAAGCTCA
10574567 CACGAACTAT
Statistics
Matches: 63, Mismatches: 8, Indels: 14
0.74 0.09 0.16
Matches are distributed among these distances:
21 3 0.05
22 14 0.22
23 11 0.17
24 22 0.35
25 11 0.17
26 2 0.03
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (22 bp):
TAAGCTCATTGAGCTGATACAG
Found at i:10575377 original size:43 final size:43
Alignment explanation
Indices: 10575312--10575396 Score: 143
Period size: 43 Copynumber: 2.0 Consensus size: 43
10575302 CAAAAACGTA
* *
10575312 GAAATCATTAAAAACGAATCAAAATCGTTCCTTAATTGCTCCT
1 GAAATCATTAAAAACGAATCAAAAACGTACCTTAATTGCTCCT
*
10575355 GAAATCATTAAAAACGAGTCAAAAACGTACCTTAATTGCTCC
1 GAAATCATTAAAAACGAATCAAAAACGTACCTTAATTGCTCC
10575397 CTCAAGCCTA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.41, C:0.21, G:0.11, T:0.27
Consensus pattern (43 bp):
GAAATCATTAAAAACGAATCAAAAACGTACCTTAATTGCTCCT
Found at i:10577712 original size:93 final size:93
Alignment explanation
Indices: 10577600--10577771 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
10577590 GCCCATAAGT
* *
10577600 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
10577665 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
10577693 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
10577758 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
10577772 CAAATATCCT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:10577767 original size:46 final size:46
Alignment explanation
Indices: 10577592--10577767 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
10577582 TGTAACCCGC
* *
10577592 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
10577638 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
10577684 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
10577731 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
10577768 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:10580197 original size:30 final size:30
Alignment explanation
Indices: 10580153--10580241 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
10580143 CAAAGATAAC
10580153 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
10580182 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
10580212 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
10580242 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:10580201 original size:15 final size:15
Alignment explanation
Indices: 10580153--10580232 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
10580143 CAAAGATAAC
*
10580153 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
10580167 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
10580182 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
10580197 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
10580212 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
10580227 AAGAAA
1 AAGAAA
10580233 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:10580241 original size:15 final size:15
Alignment explanation
Indices: 10580164--10580241 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
10580154 AGAAAACCGA
10580164 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
10580179 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
10580193 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
10580208 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
10580224 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
10580239 ATA
1 ATA
10580242 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:10583285 original size:93 final size:93
Alignment explanation
Indices: 10583173--10583343 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
10583163 GCCCATAAGT
* *
10583173 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
10583238 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
10583266 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
10583331 CGAGTTCGGATGC
66 CGAGCTCGGATGC
10583344 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:10583340 original size:46 final size:46
Alignment explanation
Indices: 10583165--10583340 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
10583155 TGTAACCCGC
* *
10583165 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
10583211 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
10583257 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
10583304 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
10583341 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:10586090 original size:11 final size:11
Alignment explanation
Indices: 10586074--10586100 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
10586064 GGAATAAATG
10586074 AATTATAGTTT
1 AATTATAGTTT
10586085 AATTATAGTTT
1 AATTATAGTTT
10586096 AATTA
1 AATTA
10586101 AATAAAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (11 bp):
AATTATAGTTT
Found at i:10587487 original size:28 final size:29
Alignment explanation
Indices: 10587434--10587488 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
10587424 GTGAGCATGA
*
10587434 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATATGATTTGGGCCTAATGGGCC
*
10587463 ATATGAATATGA-TTGGGCTTAATGGG
1 ATATGAATATGATTTGGGCCTAATGGG
10587489 TCAGATACAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 13 0.54
29 11 0.46
ACGTcount: A:0.27, C:0.09, G:0.31, T:0.33
Consensus pattern (29 bp):
ATATGAATATGATTTGGGCCTAATGGGCC
Found at i:10593855 original size:16 final size:16
Alignment explanation
Indices: 10593834--10593868 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
10593824 GCAAATCTTA
10593834 AAATGCCAAAAAGTCG
1 AAATGCCAAAAAGTCG
* *
10593850 AAATGCCGAAAAGTTG
1 AAATGCCAAAAAGTCG
10593866 AAA
1 AAA
10593869 GTCTGGCTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.51, C:0.14, G:0.20, T:0.14
Consensus pattern (16 bp):
AAATGCCAAAAAGTCG
Found at i:10594162 original size:28 final size:29
Alignment explanation
Indices: 10594097--10594162 Score: 89
Period size: 29 Copynumber: 2.3 Consensus size: 29
10594087 TTGGTTCAGG
*
10594097 CTAGATGGGCCATATGAATGTGATTTGGGC
1 CTAG-TGGGCCATATGAATGAGATTTGGGC
* *
10594127 GTAATGGGCCATATGAATGAGA-TTGGGC
1 CTAGTGGGCCATATGAATGAGATTTGGGC
10594155 CTAGTGGG
1 CTAGTGGG
10594163 TTGTTTGGGC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
28 12 0.39
29 17 0.55
30 2 0.06
ACGTcount: A:0.24, C:0.12, G:0.36, T:0.27
Consensus pattern (29 bp):
CTAGTGGGCCATATGAATGAGATTTGGGC
Found at i:10596602 original size:11 final size:11
Alignment explanation
Indices: 10596586--10596611 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
10596576 ATTGCATGTT
10596586 TGATATTATTG
1 TGATATTATTG
10596597 TGATATTATTG
1 TGATATTATTG
10596608 TGAT
1 TGAT
10596612 GTGGGCTTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.19, T:0.54
Consensus pattern (11 bp):
TGATATTATTG
Found at i:10597248 original size:16 final size:17
Alignment explanation
Indices: 10597216--10597248 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
10597206 TTTAAAGAAG
10597216 GGTTTTCAATGAAAACAA
1 GGTTTTCAA-GAAAACAA
10597234 GGTTTTCAA-AAAACA
1 GGTTTTCAAGAAAACA
10597249 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.45, C:0.12, G:0.15, T:0.27
Consensus pattern (17 bp):
GGTTTTCAAGAAAACAA
Found at i:10599400 original size:16 final size:16
Alignment explanation
Indices: 10599379--10599413 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
10599369 GCAAATCCTA
10599379 AAATGCCAAAAAGTCG
1 AAATGCCAAAAAGTCG
*
10599395 AAATGCCGAAAAGTCG
1 AAATGCCAAAAAGTCG
10599411 AAA
1 AAA
10599414 GTCTAGCTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.51, C:0.17, G:0.20, T:0.11
Consensus pattern (16 bp):
AAATGCCAAAAAGTCG
Found at i:10599661 original size:28 final size:29
Alignment explanation
Indices: 10599630--10599715 Score: 108
Period size: 28 Copynumber: 3.0 Consensus size: 29
10599620 ACATGGCTTG
*
10599630 GAATTGATTTGGGCC-AGATGGGCTATAT
1 GAATTGATTTGGGCCTAGATGGGCCATAT
10599658 GAATGTGATTTGGGCCTA-ATGGGCCATAT
1 GAAT-TGATTTGGGCCTAGATGGGCCATAT
*
10599687 GAA-TGAGATTGGGCCTAG-TGGGCCATAT
1 GAATTGA-TTTGGGCCTAGATGGGCCATAT
10599715 G
1 G
10599716 CATGTATGTA
Statistics
Matches: 52, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
27 3 0.06
28 24 0.46
29 24 0.46
30 1 0.02
ACGTcount: A:0.24, C:0.13, G:0.34, T:0.29
Consensus pattern (29 bp):
GAATTGATTTGGGCCTAGATGGGCCATAT
Found at i:10599666 original size:29 final size:30
Alignment explanation
Indices: 10599630--10599720 Score: 120
Period size: 29 Copynumber: 3.2 Consensus size: 30
10599620 ACATGGCTTG
*
10599630 GAAT-TGATTTGGGCC-AGATGGGCTATAT
1 GAATGTGATTTGGGCCTAGATGGGCCATAT
10599658 GAATGTGATTTGGGCCTA-ATGGGCCATAT
1 GAATGTGATTTGGGCCTAGATGGGCCATAT
*
10599687 GAATGAGA-TTGGGCCTAG-TGGGCCATAT
1 GAATGTGATTTGGGCCTAGATGGGCCATAT
*
10599715 GCATGT
1 GAATGT
10599721 ATGTAGTCTT
Statistics
Matches: 56, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
28 27 0.48
29 28 0.50
30 1 0.02
ACGTcount: A:0.24, C:0.13, G:0.33, T:0.30
Consensus pattern (30 bp):
GAATGTGATTTGGGCCTAGATGGGCCATAT
Found at i:10602159 original size:46 final size:48
Alignment explanation
Indices: 10602087--10602189 Score: 147
Period size: 46 Copynumber: 2.2 Consensus size: 48
10602077 GACAGGACAG
* * * *
10602087 GACAGAAATGAGCCATGTAAGTCCATATCA-GT-TATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
*
10602133 GACAGGAATGAGCCATGTAAGCCCATATTATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
10602181 GACAGGAAT
1 GACAGGAAT
10602190 AATTCATGTA
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
46 27 0.54
47 1 0.02
48 22 0.44
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (48 bp):
GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
Found at i:10604285 original size:75 final size:75
Alignment explanation
Indices: 10604159--10604308 Score: 264
Period size: 75 Copynumber: 2.0 Consensus size: 75
10604149 AGAAAGGAAT
* *
10604159 TCCTGGATTTGAAACAAGGTAATATGACAGTGACCGATTATAAGCGTGAATTTGTCAAGCTTAGT
1 TCCTGGAATTGAAACAAGGTAATATGACAGTGACCGATTATAAGCGCGAATTTGTCAAGCTTAGT
10604224 AAATATGCTC
66 AAATATGCTC
* *
10604234 TCCTGGAATTGAAACAAGGTAATATGACAGTGACCGATTATGAGCGCGAATTTGTCAGGCTTAGT
1 TCCTGGAATTGAAACAAGGTAATATGACAGTGACCGATTATAAGCGCGAATTTGTCAAGCTTAGT
10604299 AAATATGCTC
66 AAATATGCTC
10604309 GAGAATGTGT
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
75 71 1.00
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (75 bp):
TCCTGGAATTGAAACAAGGTAATATGACAGTGACCGATTATAAGCGCGAATTTGTCAAGCTTAGT
AAATATGCTC
Found at i:10622327 original size:35 final size:35
Alignment explanation
Indices: 10622288--10622358 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
10622278 GGAGAACATG
10622288 TAAGTTTTGTCCAAGATTGAATGAAGATGAACACA
1 TAAGTTTTGTCCAAGATTGAATGAAGATGAACACA
10622323 TAAGTTTTGTCCAAGATTGAATGAAGATGAACACA
1 TAAGTTTTGTCCAAGATTGAATGAAGATGAACACA
10622358 T
1 T
10622359 TTTTGTGTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.39, C:0.11, G:0.20, T:0.30
Consensus pattern (35 bp):
TAAGTTTTGTCCAAGATTGAATGAAGATGAACACA
Found at i:10625668 original size:20 final size:21
Alignment explanation
Indices: 10625625--10625670 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
10625615 GCTATTTTGT
10625625 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
10625645 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
10625664 TATGGGC
1 TATGGGC
10625671 ATTGCCCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:10636905 original size:72 final size:72
Alignment explanation
Indices: 10636788--10636923 Score: 245
Period size: 72 Copynumber: 1.9 Consensus size: 72
10636778 GGAGAAATGT
*
10636788 CAGAAAAGCTTCGATCAACTGAAAACTCATTTGACTGAAGCTCCAATTTTGGTGCAACCCGAATA
1 CAGAAAAGCTTCGATCAACTGAAAACTCATTTGACTGAAGCTCCAATTTTAGTGCAACCCGAATA
10636853 GGGTAAA
66 GGGTAAA
* *
10636860 CAGAAAAGTTTCGATCAACTGAAAACTTATTTGACTGAAGCTCCAATTTTAGTGCAACCCGAAT
1 CAGAAAAGCTTCGATCAACTGAAAACTCATTTGACTGAAGCTCCAATTTTAGTGCAACCCGAAT
10636924 CAGGCAAAGA
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
72 61 1.00
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.26
Consensus pattern (72 bp):
CAGAAAAGCTTCGATCAACTGAAAACTCATTTGACTGAAGCTCCAATTTTAGTGCAACCCGAATA
GGGTAAA
Found at i:10639981 original size:13 final size:13
Alignment explanation
Indices: 10639963--10639987 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10639953 TAATGGTATA
10639963 TTGAATCCATGAC
1 TTGAATCCATGAC
10639976 TTGAATCCATGA
1 TTGAATCCATGA
10639988 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:10640573 original size:27 final size:27
Alignment explanation
Indices: 10640538--10640716 Score: 184
Period size: 27 Copynumber: 6.6 Consensus size: 27
10640528 TTAAATTGTA
10640538 TAGCACTAAGTGTGCGATATGACTATG
1 TAGCACTAAGTGTGCGATATGACTATG
* * *
10640565 TTGCACTAAGTGTGCGAAATGAATATG
1 TAGCACTAAGTGTGCGATATGACTATG
*
10640592 -ATGCACTAAGTGTGCGA-ATTGACCATG
1 TA-GCACTAAGTGTGCGATA-TGACTATG
** *
10640619 CGGCACTAAGTGTGCGAGTTTGACTATG
1 TAGCACTAAGTGTGCGA-TATGACTATG
* * *
10640647 TAGCACTAAGTGTGCGATTTGATTACG
1 TAGCACTAAGTGTGCGATATGACTATG
* *
10640674 TAGCACTAAGTGTGCGAGT-TGATTATA
1 TAGCACTAAGTGTGCGA-TATGACTATG
*
10640701 TAGCACTGAGTGTGCG
1 TAGCACTAAGTGTGCG
10640717 GGCTCAATAT
Statistics
Matches: 130, Mismatches: 16, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
26 1 0.01
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
TAGCACTAAGTGTGCGATATGACTATG
Found at i:10640654 original size:82 final size:81
Alignment explanation
Indices: 10640540--10640695 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
10640530 AAATTGTATA
* *
10640540 GCACTAAGTGTGCGATATGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
10640604 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
10640621 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
10640686 TGCGAGTTGA
65 TGCGAATTGA
10640696 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:10640707 original size:82 final size:81
Alignment explanation
Indices: 10640536--10640716 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
10640526 GATTAAATTG
* *
10640536 TATAGCACTAAGTGTGCGATATGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TATAGCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
10640601 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
*** * ** *
10640617 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TATAGCACTAAGTGTGCGA-TATGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
10640681 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
*
10640699 TATAGCACTGAGTGTGCG
1 TATAGCACTAAGTGTGCG
10640717 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 17 0.21
82 65 0.79
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TATAGCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:10649074 original size:46 final size:46
Alignment explanation
Indices: 10649023--10649195 Score: 158
Period size: 46 Copynumber: 3.7 Consensus size: 46
10649013 TTGGGCATCC
10649023 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCT
1 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCT
* * * * *
10649069 GAACTCATTGAGTTGGGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCC
1 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G--TCT
* * *
10649116 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAAC-TCCT
1 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGT-CT
* * *
10649162 GAGCTCATTGAGTTGAGTCCAAGTTCTCTTATGG
1 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
10649196 GCGGGTTACA
Statistics
Matches: 101, Mismatches: 16, Indels: 20
0.74 0.12 0.15
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 4 0.04
46 57 0.56
47 25 0.25
48 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCT
Found at i:10649129 original size:93 final size:93
Alignment explanation
Indices: 10649016--10649187 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
10649006 TGGATATTTG
*
10649016 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGT-CTGAACTCATTGA
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATACGAAC-TCCTGAACTCATTGA
* *
10649080 GTTGGGTCCGAGTTCGTGAGATGTAACTA
65 GTTGAGTCCAAGTTCGTGAGATGTAACTA
* * *
10649109 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACTCCTGAGCTCATTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATACGAACTCCTGAACTCATTGAG
10649174 TTGAGTCCAAGTTC
66 TTGAGTCCAAGTTC
10649188 TCTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 1 0.01
93 71 0.99
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATACGAACTCCTGAACTCATTGAG
TTGAGTCCAAGTTCGTGAGATGTAACTA
Found at i:10653179 original size:43 final size:42
Alignment explanation
Indices: 10653131--10653277 Score: 170
Period size: 43 Copynumber: 3.4 Consensus size: 42
10653121 TAACCTAGAT
* * **
10653131 ATGGTCTTACATGTTATCATATATCAATGCCAACATCCCAGAC
1 ATGGTCTTACATGTAATCATATA-CAATGCAAATGTCCCAGAC
*** * *
10653174 ATGGTCTTACACAAAATCATATAACGATGCTAATGTCCCAGAC
1 ATGGTCTTACATGTAATCATAT-ACAATGCAAATGTCCCAGAC
10653217 ATGGTCTTACATGTAATCCCA-ATACAATGCAAATGTCCCAGAC
1 ATGGTCTTACATGTAAT--CATATACAATGCAAATGTCCCAGAC
10653260 ATGGTCTTACATGTAATC
1 ATGGTCTTACATGTAATC
10653278 TCATCTCGAT
Statistics
Matches: 88, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
41 1 0.01
43 82 0.93
44 3 0.03
45 2 0.02
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.29
Consensus pattern (42 bp):
ATGGTCTTACATGTAATCATATACAATGCAAATGTCCCAGAC
Found at i:10654890 original size:11 final size:11
Alignment explanation
Indices: 10654874--10654898 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
10654864 TGTTAGCTCG
10654874 TTTTGAATTTA
1 TTTTGAATTTA
10654885 TTTTGAATTTA
1 TTTTGAATTTA
10654896 TTT
1 TTT
10654899 CATTTTAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (11 bp):
TTTTGAATTTA
Done.