Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 300 of 313
Found at i:92265922 original size:15 final size:15
Alignment explanation
Indices: 92265902--92265932 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
92265892 TCTGGGACAA
92265902 AGAAATCCAAGATAC
1 AGAAATCCAAGATAC
92265917 AGAAATCCAAGATAC
1 AGAAATCCAAGATAC
92265932 A
1 A
92265933 ATATCATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.55, C:0.19, G:0.13, T:0.13
Consensus pattern (15 bp):
AGAAATCCAAGATAC
Found at i:92266510 original size:35 final size:34
Alignment explanation
Indices: 92266464--92266532 Score: 102
Period size: 35 Copynumber: 2.0 Consensus size: 34
92266454 CTGATTACTA
**
92266464 CACTCTTTCAACATCGGGTCTGAATAAGTCGATT
1 CACTCTTTCAACATCGCATCTGAATAAGTCGATT
*
92266498 NCACTCTTTCAACATCGCATCTGAATAAGTTGATT
1 -CACTCTTTCAACATCGCATCTGAATAAGTCGATT
92266533 TAGCAAATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.33
Consensus pattern (34 bp):
CACTCTTTCAACATCGCATCTGAATAAGTCGATT
Found at i:92274534 original size:15 final size:15
Alignment explanation
Indices: 92274514--92274582 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
92274504 GTATCTTGGG
92274514 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
92274529 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
92274544 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
92274559 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
92274574 TTTCTTTAT
1 TTTCTTTAT
92274583 TCAGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:92274583 original size:30 final size:30
Alignment explanation
Indices: 92274505--92274584 Score: 99
Period size: 30 Copynumber: 2.7 Consensus size: 30
92274495 CATAGTATCG
* * *
92274505 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATCTCTC
* *
92274535 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATCTCTC
92274565 TATCTTGGATTTCTTTATTC
1 TATCTTGGATTTCTTTATTC
92274585 AGTTTTCTTA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
29 1 0.02
30 41 0.95
31 1 0.02
ACGTcount: A:0.11, C:0.17, G:0.15, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATCTCTC
Found at i:92277034 original size:46 final size:46
Alignment explanation
Indices: 92276984--92277157 Score: 188
Period size: 46 Copynumber: 3.8 Consensus size: 46
92276974 TGTTTGGGCA
*
92276984 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*** * * ** *
92277030 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAAAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* * *
92277077 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
92277123 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTAT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT
92277158 ATGCGGGTTA
Statistics
Matches: 104, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
46 70 0.67
47 34 0.33
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:92277139 original size:93 final size:93
Alignment explanation
Indices: 92276980--92277151 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
92276970 AGGATGTTTG
* *
92276980 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
92277045 TTGAGTCCGAGTTCGAAAGATGTAACTA
66 TTGAGTCCGAGTTCGAAAGATGTAACTA
* * * *
92277073 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
*
92277138 TTGAGTCTGAGTTC
66 TTGAGTCCGAGTTC
92277152 ACTTATATGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAAAGATGTAACTA
Found at i:92280816 original size:47 final size:47
Alignment explanation
Indices: 92280745--92280906 Score: 243
Period size: 47 Copynumber: 3.4 Consensus size: 47
92280735 CCCTTCGGGA
* * * *
92280745 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
92280792 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
92280839 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
92280888 CTTATCACATATATACACT
1 CTTATCACATATATACACT
92280907 CACATCACAA
Statistics
Matches: 103, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
47 58 0.56
49 45 0.44
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:92280871 original size:49 final size:49
Alignment explanation
Indices: 92280745--92280902 Score: 234
Period size: 49 Copynumber: 3.3 Consensus size: 49
92280735 CCCTTCGGGA
* * *
92280745 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
92280792 CCTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
92280839 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
92280888 CTTATCACATATATA
1 CTTATCACATATATA
92280903 CACTCACATC
Statistics
Matches: 98, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
46 1 0.01
47 45 0.46
49 52 0.53
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:92285241 original size:30 final size:30
Alignment explanation
Indices: 92285189--92285268 Score: 99
Period size: 30 Copynumber: 2.5 Consensus size: 30
92285179 ATTTATAAAA
92285189 TTTTAAATTAATAATGATAAAATTATATTTTAATC
1 TTTTAAA--AATAAT-A-AAAATT-TATTTTAATC
92285224 -TTTAAAAATAATAAAAATTTATTTTAATC
1 TTTTAAAAATAATAAAAATTTATTTTAATC
*
92285253 TTTTAAAAATTATAAA
1 TTTTAAAAATAATAAA
92285269 GATATAGACT
Statistics
Matches: 43, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
29 10 0.23
30 20 0.47
31 1 0.02
32 6 0.14
34 6 0.14
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.46
Consensus pattern (30 bp):
TTTTAAAAATAATAAAAATTTATTTTAATC
Found at i:92290626 original size:9 final size:9
Alignment explanation
Indices: 92290612--92290667 Score: 94
Period size: 9 Copynumber: 6.2 Consensus size: 9
92290602 TTTGGTTAAA
92290612 AATTACCCG
1 AATTACCCG
92290621 AATTACCCG
1 AATTACCCG
92290630 AATTACCCG
1 AATTACCCG
92290639 AATTACCCG
1 AATTACCCG
*
92290648 AATTAACCG
1 AATTACCCG
*
92290657 AATTAACCG
1 AATTACCCG
92290666 AA
1 AA
92290668 AAATACCCAA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
9 46 1.00
ACGTcount: A:0.39, C:0.29, G:0.11, T:0.21
Consensus pattern (9 bp):
AATTACCCG
Found at i:92295260 original size:16 final size:16
Alignment explanation
Indices: 92295239--92295306 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
92295229 GTTTGGTTCA
*
92295239 CTGTAATGGAATAGGG
1 CTGTAATGGAATAGAG
*
92295255 CTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
92295271 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
*
92295287 CTGTAATGGAATAGAA
1 CTGTAATGGAATAGAG
92295303 CTGT
1 CTGT
92295307 GATAAGTAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.35, C:0.07, G:0.29, T:0.28
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:92295381 original size:44 final size:46
Alignment explanation
Indices: 92295291--92295384 Score: 138
Period size: 44 Copynumber: 2.1 Consensus size: 46
92295281 ATAGAGCTGT
*
92295291 AATGGAATAGAACTGTGATAAGTAATTCAACTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAAGTAATTCAACTGTTTGGTTGAATGG
***
92295337 AATGGAATAGAACTGTAAT-AGT-ATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAAGTAATTCAACTGTTTGGTTGAATGG
92295381 AATG
1 AATG
92295385 ATGTTGTAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 23 0.52
45 3 0.07
46 18 0.41
ACGTcount: A:0.33, C:0.05, G:0.27, T:0.35
Consensus pattern (46 bp):
AATGGAATAGAACTGTAATAAGTAATTCAACTGTTTGGTTGAATGG
Found at i:92295716 original size:14 final size:14
Alignment explanation
Indices: 92295697--92295735 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
92295687 GTTTGCCAGT
* *
92295697 AAAATATTTTCTGG
1 AAAATAATTTATGG
92295711 AAAATAATTTATGG
1 AAAATAATTTATGG
92295725 AAAATAATTTA
1 AAAATAATTTA
92295736 CTTTTCTAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.49, C:0.03, G:0.10, T:0.38
Consensus pattern (14 bp):
AAAATAATTTATGG
Found at i:92296096 original size:18 final size:18
Alignment explanation
Indices: 92296073--92296107 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
92296063 ACGTGGTAGT
*
92296073 CCAACTAGATTTTAAGTG
1 CCAACTAGATCTTAAGTG
92296091 CCAACTAGATCTTAAGT
1 CCAACTAGATCTTAAGT
92296108 ATATCTGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.31
Consensus pattern (18 bp):
CCAACTAGATCTTAAGTG
Found at i:92296181 original size:18 final size:18
Alignment explanation
Indices: 92296158--92296192 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
92296148 ACGTGGTAGT
*
92296158 CCAACTAGATTTTAAGTG
1 CCAACTAGATCTTAAGTG
92296176 CCAACTAGATCTTAAGT
1 CCAACTAGATCTTAAGT
92296193 ATATCTGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.31
Consensus pattern (18 bp):
CCAACTAGATCTTAAGTG
Found at i:92296193 original size:85 final size:85
Alignment explanation
Indices: 92296050--92296218 Score: 338
Period size: 85 Copynumber: 2.0 Consensus size: 85
92296040 ATTATCTCCC
92296050 TAATGATAATCCTACGTGGTAGTCCAACTAGATTTTAAGTGCCAACTAGATCTTAAGTATATCTG
1 TAATGATAATCCTACGTGGTAGTCCAACTAGATTTTAAGTGCCAACTAGATCTTAAGTATATCTG
92296115 TTAATACATACTTCATCCGT
66 TTAATACATACTTCATCCGT
92296135 TAATGATAATCCTACGTGGTAGTCCAACTAGATTTTAAGTGCCAACTAGATCTTAAGTATATCTG
1 TAATGATAATCCTACGTGGTAGTCCAACTAGATTTTAAGTGCCAACTAGATCTTAAGTATATCTG
92296200 TTAATACATACTTCATCCG
66 TTAATACATACTTCATCCG
92296219 GGTAAATTAT
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 84 1.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (85 bp):
TAATGATAATCCTACGTGGTAGTCCAACTAGATTTTAAGTGCCAACTAGATCTTAAGTATATCTG
TTAATACATACTTCATCCGT
Found at i:92296251 original size:40 final size:40
Alignment explanation
Indices: 92296200--92296444 Score: 364
Period size: 40 Copynumber: 6.1 Consensus size: 40
92296190 AGTATATCTG
* * *
92296200 TTAATACATACTTCATCCGGGTAAATTATACAATTTTCTG
1 TTAATACATACTTCACCCGGGTAAATTATACAGTTTTCTA
*
92296240 TTAATACATACTTTACCCGGGTAAATTATACAGTTTTCTA
1 TTAATACATACTTCACCCGGGTAAATTATACAGTTTTCTA
* * *
92296280 TTAATACATACTTCATCCGGATAAATTATACAGTTTTCTG
1 TTAATACATACTTCACCCGGGTAAATTATACAGTTTTCTA
* *
92296320 GTAATACATACTTTACCCGGGTAAATTATACAGTTTTCTA
1 TTAATACATACTTCACCCGGGTAAATTATACAGTTTTCTA
*
92296360 TTAATACATACTTTACCCGGGTAAATTATACAGTTTTCTA
1 TTAATACATACTTCACCCGGGTAAATTATACAGTTTTCTA
* ** *
92296400 TTAATATATACTTCGTCCGGATAAATTATACAGTTTTCTA
1 TTAATACATACTTCACCCGGGTAAATTATACAGTTTTCTA
92296440 TTAAT
1 TTAAT
92296445 GTGCTTGTGA
Statistics
Matches: 186, Mismatches: 19, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 186 1.00
ACGTcount: A:0.33, C:0.17, G:0.10, T:0.40
Consensus pattern (40 bp):
TTAATACATACTTCACCCGGGTAAATTATACAGTTTTCTA
Found at i:92296357 original size:120 final size:120
Alignment explanation
Indices: 92296196--92296438 Score: 423
Period size: 120 Copynumber: 2.0 Consensus size: 120
92296186 CTTAAGTATA
* * *
92296196 TCTGTTAATACATACTTCATCCGGGTAAATTATACAATTTTCTGTTAATACATACTTTACCCGGG
1 TCTGGTAATACATACTTCACCCGGGTAAATTATACAATTTTCTATTAATACATACTTTACCCGGG
92296261 TAAATTATACAGTTTTCTATTAATACATACTTCATCCGGATAAATTATACAGTTT
66 TAAATTATACAGTTTTCTATTAATACATACTTCATCCGGATAAATTATACAGTTT
* *
92296316 TCTGGTAATACATACTTTACCCGGGTAAATTATACAGTTTTCTATTAATACATACTTTACCCGGG
1 TCTGGTAATACATACTTCACCCGGGTAAATTATACAATTTTCTATTAATACATACTTTACCCGGG
* *
92296381 TAAATTATACAGTTTTCTATTAATATATACTTCGTCCGGATAAATTATACAGTTT
66 TAAATTATACAGTTTTCTATTAATACATACTTCATCCGGATAAATTATACAGTTT
92296436 TCT
1 TCT
92296439 ATTAATGTGC
Statistics
Matches: 116, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
120 116 1.00
ACGTcount: A:0.32, C:0.17, G:0.11, T:0.40
Consensus pattern (120 bp):
TCTGGTAATACATACTTCACCCGGGTAAATTATACAATTTTCTATTAATACATACTTTACCCGGG
TAAATTATACAGTTTTCTATTAATACATACTTCATCCGGATAAATTATACAGTTT
Found at i:92298598 original size:20 final size:21
Alignment explanation
Indices: 92298573--92298611 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
92298563 CTTTGCCTAG
*
92298573 TTTCGCTTCAAC-GAAATATA
1 TTTCGCTCCAACGGAAATATA
92298593 TTTCGCTCCAACGGAAATA
1 TTTCGCTCCAACGGAAATA
92298612 AATTCTGCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.31
Consensus pattern (21 bp):
TTTCGCTCCAACGGAAATATA
Found at i:92301466 original size:26 final size:26
Alignment explanation
Indices: 92301437--92301489 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
92301427 TAATGAAAGC
92301437 CTATATGTTTTGGTTATGTAATTAGT
1 CTATATGTTTTGGTTATGTAATTAGT
*
92301463 CTATATGTTTTGGTTATGTAGTTAGT
1 CTATATGTTTTGGTTATGTAATTAGT
92301489 C
1 C
92301490 ATTTAATATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.21, C:0.06, G:0.21, T:0.53
Consensus pattern (26 bp):
CTATATGTTTTGGTTATGTAATTAGT
Found at i:92306138 original size:40 final size:40
Alignment explanation
Indices: 92306067--92306142 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
92306057 CGGTACCTTA
* *
92306067 TGGTGTGTAGGGTTGGATAGGTTGATATTATCCCCATATT
1 TGGTGTGTAGGGATGGATAGGTCGATATTATCCCCATATT
* * *
92306107 TGGTGTGTAGGGATGGGTGGGTCGATTTTATCCCCA
1 TGGTGTGTAGGGATGGATAGGTCGATATTATCCCCA
92306143 CATGGTGTGT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.17, C:0.12, G:0.34, T:0.37
Consensus pattern (40 bp):
TGGTGTGTAGGGATGGATAGGTCGATATTATCCCCATATT
Found at i:92307256 original size:47 final size:48
Alignment explanation
Indices: 92307187--92307309 Score: 160
Period size: 49 Copynumber: 2.6 Consensus size: 48
92307177 AATACTGATT
* * * *
92307187 CCATGTCCCAGACATGGTCTTACACTAGCCCATC-CATC-AAGTCGATG
1 CCATGTCCCATACATGGTCTTACACT-GACCATCAAATCGAAGCCGATG
* *
92307234 CCATGTCCCATACATGGTCTTACACTGACTATCGAAATCGAGGCCGATG
1 CCATGTCCCATACATGGTCTTACACTGACCATC-AAATCGAAGCCGATG
92307283 CCATGTCCCATACATGGTCTTACACTG
1 CCATGTCCCATACATGGTCTTACACTG
92307310 GCTTACATCT
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
46 5 0.07
47 25 0.37
48 3 0.04
49 34 0.51
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (48 bp):
CCATGTCCCATACATGGTCTTACACTGACCATCAAATCGAAGCCGATG
Found at i:92307399 original size:94 final size:94
Alignment explanation
Indices: 92307280--92307451 Score: 249
Period size: 94 Copynumber: 1.8 Consensus size: 94
92307270 ATCGAGGCCG
* * *
92307280 ATGCCATGTCCCATACATGGTCTTACACTGGCT-TACAT-CTCGAGGCCGATATATATCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTGCCTCT-CATAAT-GAGGCCGATATATATCCCAGAC
92307343 ATGTCTTACACTAGCTCTTGTCTTAATGCCA
64 ATGTCTTACACTAGCTCTTGTCTTAATGCCA
* * * *
92307374 ATGCCATGTCCCAGACATGGTCTTACACTGCCTCTCATAATGTGGCCGATGTATGTCCCAGATAT
1 ATGCCATGTCCCAGACATGGTCTTACACTGCCTCTCATAATGAGGCCGATATATATCCCAGACAT
92307439 GTCTTACACTAGC
66 GTCTTACACTAGC
92307452 ACACAAATGA
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
94 67 0.97
95 2 0.03
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.30
Consensus pattern (94 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGCCTCTCATAATGAGGCCGATATATATCCCAGACAT
GTCTTACACTAGCTCTTGTCTTAATGCCA
Found at i:92307430 original size:47 final size:48
Alignment explanation
Indices: 92307187--92307448 Score: 176
Period size: 47 Copynumber: 5.5 Consensus size: 48
92307177 AATACTGATT
92307187 CCATGTCCCAGACATGGTCTTACACTAGCC-CATCCATCAA-GT---CGATG
1 CCATGTCCCAGACATGGTCTTACACT-GCCTC-T-CAT-AATGTGGCCGATG
* * * *
92307234 CCATGTCCCATACATGGTCTTACACTGACTATCGA-AATCGAGGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTGCCTCTC-ATAAT-GTGGCCGATG
* * * *
92307283 CCATGTCCCATACATGGTCTTACACTGGCT-TACAT-CTCGAGGCCGAT-
1 CCATGTCCCAGACATGGTCTTACACTGCCTCT-CATAAT-GTGGCCGATG
** * * * *
92307330 ATATATCCCAGACAT-GTCTTACACTAGCTCTTGTCTTAA--T-GCCAATG
1 CCATGTCCCAGACATGGTCTTACACT-GC-C-TCTCATAATGTGGCCGATG
92307377 CCATGTCCCAGACATGGTCTTACACTGCCTCTCATAATGTGGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTGCCTCTCATAATGTGGCCGATG
* *
92307425 -TATGTCCCAGATAT-GTCTTACACT
1 CCATGTCCCAGACATGGTCTTACACT
92307449 AGCACACAAA
Statistics
Matches: 173, Mismatches: 23, Indels: 39
0.74 0.10 0.17
Matches are distributed among these distances:
44 2 0.01
45 7 0.04
46 31 0.18
47 64 0.37
48 30 0.17
49 38 0.22
50 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (48 bp):
CCATGTCCCAGACATGGTCTTACACTGCCTCTCATAATGTGGCCGATG
Found at i:92311882 original size:27 final size:27
Alignment explanation
Indices: 92311841--92311894 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
92311831 TGTCTTGTGA
* *
92311841 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
92311868 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
92311895 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:92312300 original size:50 final size:49
Alignment explanation
Indices: 92312141--92312371 Score: 284
Period size: 50 Copynumber: 4.7 Consensus size: 49
92312131 TCTATTGTGA
*
92312141 GGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * ** *
92312190 GGTCGCATGTGTAGTACTAAGTG-AAGCTACTATGCATACCCGATAACTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * **
92312239 CGATCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
92312289 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
92312339 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
92312372 TGCATACTAG
Statistics
Matches: 150, Mismatches: 29, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
48 18 0.12
49 53 0.35
50 64 0.43
51 15 0.10
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:92312350 original size:99 final size:99
Alignment explanation
Indices: 92312148--92312371 Score: 290
Period size: 99 Copynumber: 2.3 Consensus size: 99
92312138 TGAGGTCATG
*
92312148 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAAGTG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGTG
* **
92312213 AAGCTACTATGCATACCCGATAACTTCGATCATG
66 AAGCTACTACGCATACCCGATAACTTCGATCACA
* ** *
92312247 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACATGTGTAGTACTAAGT
* ** * * *
92312312 GCAGGCTACTACGTGTACCGGATAA-TT-GGTCGCA
65 G-AAGCTACTACGCATACCCGATAACTTCGATCACA
92312346 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
92312372 TGCATACTAG
Statistics
Matches: 109, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
99 68 0.62
100 23 0.21
101 18 0.17
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (99 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGTG
AAGCTACTACGCATACCCGATAACTTCGATCACA
Found at i:92316811 original size:27 final size:27
Alignment explanation
Indices: 92316781--92316872 Score: 132
Period size: 27 Copynumber: 3.4 Consensus size: 27
92316771 ATTACCAAAG
* * *
92316781 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
92316808 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCGTTT
92316835 TACCCTC-AGTTTACAAAATTACCGTTT
1 TACCCTCGA-TTTACAAAATTACCGTTT
92316862 TACCCTCGATT
1 TACCCTCGATT
92316873 GTGAAATTAC
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
26 1 0.02
27 56 0.97
28 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCGTTT
Found at i:92316826 original size:54 final size:54
Alignment explanation
Indices: 92316768--92316872 Score: 140
Period size: 54 Copynumber: 1.9 Consensus size: 54
92316758 CTCGACTTGT
* * *
92316768 AAAATTACCAAAGTACCCTC-GATTTATAGAATTATCGTTTTACCCTCGATTTAC
1 AAAATTACCAAAGTACCCTCAG-TTTACAAAATTACCGTTTTACCCTCGATTTAC
***
92316822 AAAATTACCATTTTACCCTCAGTTTACAAAATTACCGTTTTACCCTCGATT
1 AAAATTACCAAAGTACCCTCAGTTTACAAAATTACCGTTTTACCCTCGATT
92316873 GTGAAATTAC
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
54 43 0.98
55 1 0.02
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.36
Consensus pattern (54 bp):
AAAATTACCAAAGTACCCTCAGTTTACAAAATTACCGTTTTACCCTCGATTTAC
Found at i:92316894 original size:27 final size:27
Alignment explanation
Indices: 92316864--92317054 Score: 169
Period size: 27 Copynumber: 7.1 Consensus size: 27
92316854 TACCGTTTTA
* * *
92316864 CCCTCGATTGTGAAATTACTAAAATAC
1 CCCTAGATTGTAAAATTACCAAAATAC
* * *
92316891 CCCTATA-AGATAGAATTACCAAAATAC
1 CCCTAGATTG-TAAAATTACCAAAATAC
*
92316918 CCCTAGTTTGTAAAATTACCAAAATAC
1 CCCTAGATTGTAAAATTACCAAAATAC
*
92316945 CCCTAGTTTGTAAAATTACCAAAATAC
1 CCCTAGATTGTAAAATTACCAAAATAC
* * * * *
92316972 CACTGGTTTGTGAAATTACCGAAATA-
1 CCCTAGATTGTAAAATTACCAAAATAC
92316998 CCCTCA-ATTTGTAAAATTACCAAAATAC
1 CCCT-AGA-TTGTAAAATTACCAAAATAC
92317026 CCCTA-ATT-TACAAAATTA-CAGAAATAC
1 CCCTAGATTGT--AAAATTACCA-AAATAC
92317053 CC
1 CC
92317055 TTAACTTTCT
Statistics
Matches: 137, Mismatches: 19, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
25 1 0.01
26 8 0.06
27 123 0.90
28 5 0.04
ACGTcount: A:0.41, C:0.23, G:0.08, T:0.28
Consensus pattern (27 bp):
CCCTAGATTGTAAAATTACCAAAATAC
Found at i:92316945 original size:54 final size:53
Alignment explanation
Indices: 92316871--92317054 Score: 208
Period size: 54 Copynumber: 3.4 Consensus size: 53
92316861 TTACCCTCGA
* * ** *
92316871 TTGTGAAATTACTAAAATACCCCTATAAGATAGAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTATTTG-TAAAATTACCAAAATACCCCTAGT
* *
92316925 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTGGT
1 TTGTAAAATTACCAAAATACCCCTA-TTTGTAAAATTACCAAAATACCCCTAGT
* * * *
92316979 TTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAAT
1 TTGTAAAATTACCAAAATACCC-CTATTTGTAAAATTACCAAAATACCCCTAGT
**
92317033 TTACAAAATTA-CAGAAATACCC
1 TTGTAAAATTACCA-AAATACCC
92317055 TTAACTTTCT
Statistics
Matches: 110, Mismatches: 17, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
53 1 0.01
54 105 0.95
55 4 0.04
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.28
Consensus pattern (53 bp):
TTGTAAAATTACCAAAATACCCCTATTTGTAAAATTACCAAAATACCCCTAGT
Found at i:92316997 original size:81 final size:81
Alignment explanation
Indices: 92316904--92317053 Score: 223
Period size: 81 Copynumber: 1.9 Consensus size: 81
92316894 TATAAGATAG
* * **
92316904 AATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCA-A
1 AATTACCAAAATACCCTC-AATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTA-CAGA
92316967 AATACCACTGGTTTGTGA
64 AATACCACTGGTTTGTGA
*
92316985 AATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACAGAAA
1 AATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACAGAAA
92317050 TACC
66 TACC
92317054 CTTAACTTTC
Statistics
Matches: 62, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
80 2 0.03
81 59 0.95
82 1 0.02
ACGTcount: A:0.43, C:0.22, G:0.07, T:0.28
Consensus pattern (81 bp):
AATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACAGAAA
TACCACTGGTTTGTGA
Found at i:92320260 original size:46 final size:45
Alignment explanation
Indices: 92320207--92320382 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
92320197 TGGTTGAGCA
92320207 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAA-G
* *** * *
92320253 TCTGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACT-AGGCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-TGA-GAAG
* **
92320300 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCCAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAA-G
* *
92320346 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
92320383 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
44 2 0.02
45 1 0.01
46 68 0.64
47 31 0.29
48 2 0.02
49 3 0.03
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAAG
Found at i:92320363 original size:93 final size:93
Alignment explanation
Indices: 92320204--92320374 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
92320194 GGATGGTTGA
* * * *
92320204 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGACAACGCCCGAACTCGTTGAGT
92320269 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * *
92320297 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCCAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGACAACGCCCGAACTCGTTGAGT
92320362 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
92320375 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGACAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:92324811 original size:27 final size:28
Alignment explanation
Indices: 92324762--92324817 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 28
92324752 TACATGAAGA
* *
92324762 TAAAGAAGAGGAAAATGACTTCT-CTTT
1 TAAAGAAGAGAAAAATAACTTCTCCTTT
*
92324789 TAAAGAAGAGAAAAATAATTTCTCCTTT
1 TAAAGAAGAGAAAAATAACTTCTCCTTT
92324817 T
1 T
92324818 TTCCATTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
27 20 0.80
28 5 0.20
ACGTcount: A:0.43, C:0.11, G:0.14, T:0.32
Consensus pattern (28 bp):
TAAAGAAGAGAAAAATAACTTCTCCTTT
Found at i:92338010 original size:42 final size:43
Alignment explanation
Indices: 92337910--92338023 Score: 135
Period size: 43 Copynumber: 2.7 Consensus size: 43
92337900 AACTCGTACA
* * *
92337910 ATGCCAAC-ATCCCAGACTTGGTCTTACATGTAATCAAATATCG
1 ATGCC-ACTATCCCAGACATGGTCTTACACGAAATCAAATATCG
* *
92337953 ATGTCACTATCCCAGACAGGGTCTTACACGAAATCAAATA-CG
1 ATGCCACTATCCCAGACATGGTCTTACACGAAATCAAATATCG
*
92337995 ATGCCGA-TGTCCCAGACATGGTCTTACAC
1 ATGCC-ACTATCCCAGACATGGTCTTACAC
92338024 ATAAATCATA
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
42 28 0.46
43 33 0.54
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.25
Consensus pattern (43 bp):
ATGCCACTATCCCAGACATGGTCTTACACGAAATCAAATATCG
Found at i:92338821 original size:89 final size:89
Alignment explanation
Indices: 92338670--92338846 Score: 336
Period size: 89 Copynumber: 2.0 Consensus size: 89
92338660 TAAGGAATAA
92338670 AAGTTTAATTATAGATTAAAGAAATAAAAGGGACTAATCTAGTAATTAGACCCTAACTGCCATGT
1 AAGTTTAATTATAGATTAAAGAAATAAAAGGGACTAATCTAGTAATTAGACCCTAACTGCCATGT
92338735 GTATGTTAATATTGAATAACGTGT
66 GTATGTTAATATTGAATAACGTGT
*
92338759 AAGTTTAATTATAGATTAAAGAAATAAAAGGGACTAATCTAGTAATTAGACCCTAAGTGCCATGT
1 AAGTTTAATTATAGATTAAAGAAATAAAAGGGACTAATCTAGTAATTAGACCCTAACTGCCATGT
*
92338824 GTGTGTTAATATTGAATAACGTG
66 GTATGTTAATATTGAATAACGTG
92338847 CGTAATAGTT
Statistics
Matches: 86, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
89 86 1.00
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.32
Consensus pattern (89 bp):
AAGTTTAATTATAGATTAAAGAAATAAAAGGGACTAATCTAGTAATTAGACCCTAACTGCCATGT
GTATGTTAATATTGAATAACGTGT
Found at i:92339013 original size:4 final size:4
Alignment explanation
Indices: 92339004--92339042 Score: 64
Period size: 4 Copynumber: 10.2 Consensus size: 4
92338994 GAGCAAACGT
92339004 GAAA GAAA G-AA GAAA GAAA GAAA GAAA GAAA GAAA -AAA G
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA G
92339043 GGAAATTTGA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
3 6 0.18
4 27 0.82
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:92340003 original size:47 final size:47
Alignment explanation
Indices: 92339939--92340049 Score: 145
Period size: 47 Copynumber: 2.4 Consensus size: 47
92339929 GACATTGAGT
* *
92339939 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCAGATTTGTTC
* * *
92339986 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCAGATTTGTTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCAGATTTGTTC
92340033 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
92340050 CTTATCCCGG
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
47 51 0.93
48 4 0.07
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCAGATTTGTTC
Found at i:92342106 original size:25 final size:27
Alignment explanation
Indices: 92342069--92342121 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
92342059 TCAAACATGC
92342069 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
92342095 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
92342121 A
1 A
92342122 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:92343642 original size:26 final size:26
Alignment explanation
Indices: 92343606--92343689 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
92343596 CATGAAATTC
92343606 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
92343632 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
92343658 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
92343684 TTATCA
1 TTATCA
92343690 ATTTGTATCA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:92345833 original size:39 final size:40
Alignment explanation
Indices: 92345790--92345957 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
92345780 CGAGGTTTAG
* * *
92345790 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
92345829 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
92345869 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGACCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
92345909 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
92345950 CCGGATAT
1 CCGGATAT
92345958 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:92345940 original size:41 final size:40
Alignment explanation
Indices: 92345813--92345957 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
92345803 CTCGCACAAG
* * * * *
92345813 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
92345853 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
92345893 GCCTTC-GGACCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
92345934 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
92345958 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:92349083 original size:40 final size:40
Alignment explanation
Indices: 92349032--92349416 Score: 619
Period size: 40 Copynumber: 9.6 Consensus size: 40
92349022 CATTTGAATG
92349032 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
92349072 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
92349112 ATATCTGGGCTAAGACCTGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
92349152 ATATCCGGGCGAAGACCCGAAGGCATTTGTGCGATTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
92349192 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
92349232 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAACTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
92349272 ATATCCGGGCTAAGACCCGACGGCGTTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
92349312 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAA-TTGAT
* * *
92349352 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
92349392 ATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
92349417 ATTGAGCTTG
Statistics
Matches: 320, Mismatches: 23, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
39 2 0.01
40 317 0.99
41 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
Found at i:92351226 original size:38 final size:38
Alignment explanation
Indices: 92351184--92351259 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
92351174 CAAGAACTCC
92351184 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
92351222 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
92351260 AAAGGATGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:92358038 original size:41 final size:40
Alignment explanation
Indices: 92357911--92358055 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
92357901 CTCGCACAAG
* * * * *
92357911 GCCTTCGGGTCTTAACCCGGATATAGTCACTAGAATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
92357951 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
92357991 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
92358032 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
92358056 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:92359286 original size:38 final size:38
Alignment explanation
Indices: 92359244--92359319 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
92359234 CAAGAACTCC
92359244 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
92359282 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
92359320 AAAGGACGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:92366628 original size:15 final size:15
Alignment explanation
Indices: 92366608--92366642 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
92366598 TTAAATTTAG
92366608 TACTTAAATTTTCAA
1 TACTTAAATTTTCAA
92366623 TACTT-AATTTTCAA
1 TACTTAAATTTTCAA
*
92366637 CACTTA
1 TACTTA
92366643 TTTTTTTAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.37, C:0.17, G:0.00, T:0.46
Consensus pattern (15 bp):
TACTTAAATTTTCAA
Found at i:92366633 original size:14 final size:14
Alignment explanation
Indices: 92366608--92366646 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
92366598 TTAAATTTAG
92366608 TACTTAAATTTTCAA
1 TACTT-AATTTTCAA
92366623 TACTTAATTTTCAA
1 TACTTAATTTTCAA
*
92366637 CACTT-ATTTT
1 TACTTAATTTT
92366647 TTTAACTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 5 0.22
14 13 0.57
15 5 0.22
ACGTcount: A:0.33, C:0.15, G:0.00, T:0.51
Consensus pattern (14 bp):
TACTTAATTTTCAA
Found at i:92367351 original size:15 final size:17
Alignment explanation
Indices: 92367324--92367359 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
92367314 ATTTTATTTT
92367324 AATAATAAATTTTAAA-
1 AATAATAAATTTTAAAC
92367340 AATAAT-AATTTTAAAC
1 AATAATAAATTTTAAAC
92367356 AATA
1 AATA
92367360 TTCTTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (17 bp):
AATAATAAATTTTAAAC
Found at i:92369770 original size:19 final size:19
Alignment explanation
Indices: 92369746--92369791 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
92369736 TGTTTTCTTG
92369746 AAGCTTTTCAAAGATTTCT
1 AAGCTTTTCAAAGATTTCT
*
92369765 AAGCTTTTCCAAGATTTCT
1 AAGCTTTTCAAAGATTTCT
92369784 AAGCTTTT
1 AAGCTTTT
92369792 TTGTTAGATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.11, T:0.43
Consensus pattern (19 bp):
AAGCTTTTCAAAGATTTCT
Found at i:92371527 original size:56 final size:57
Alignment explanation
Indices: 92371419--92371528 Score: 134
Period size: 56 Copynumber: 1.9 Consensus size: 57
92371409 TATACTCAAT
* ** * * *
92371419 AGAGCTTAGTCAGGATTACCAGTCCAGGCTAAATCCTTTTTATGACATATGCTCCAA
1 AGAGCTTAATCAGGATTACCAGTCCAGGCTAAATCCAATCTATAACACATGCTCCAA
*
92371476 AGAGCTTAATCTA-GATTACCCGTCC-GGCTAAATCCAATCTATAACACATGCTC
1 AGAGCTTAATC-AGGATTACCAGTCCAGGCTAAATCCAATCTATAACACATGCTC
92371529 GAGAAGACTT
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
56 23 0.51
57 21 0.47
58 1 0.02
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.28
Consensus pattern (57 bp):
AGAGCTTAATCAGGATTACCAGTCCAGGCTAAATCCAATCTATAACACATGCTCCAA
Found at i:92375434 original size:44 final size:44
Alignment explanation
Indices: 92375362--92376183 Score: 384
Period size: 44 Copynumber: 18.5 Consensus size: 44
92375352 TATGCCCCAC
* * *
92375362 TGCTATCTCGAGG-AGACAAGATCTACAATCTTCAGTTTGCTCCCT
1 TGCTACCTC-AGGAAGATAAGA-CTACAATCTTCAGTCTGCTCCCT
* *
92375407 TGCTACCTCAAGAAGATAAGACTACAATCTTCAATCTGCTCCCT
1 TGCTACCTCAGGAAGATAAGACTACAATCTTCAGTCTGCTCCCT
* ***** ** *
92375451 TGCTACCTTAGTG-AGATAAGGA-TGGTGGCTAAAATCTTGCTCCC-
1 TGCTACCTCAG-GAAGATAA-GACTACAATCTTCAGTC-TGCTCCCT
* * * * *
92375495 TGCTACCTCAGGAAGATAAGATTCGCCATATTC-GATTTGCTCCAC-
1 TGCTACCTCAGGAAGATAAGACT-ACAATCTTCAG-TCTGCTCC-CT
* * * *
92375540 TGCTATCTCAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCT
1 TGCTACCTCAGGAAGATAAGA-CTACAATCTTCAGTCTGCTCCCT
* * *
92375585 TGCTACCTCAGGAAGATAAGACTACAATCTTAAGCCTGC-CCTCG
1 TGCTACCTCAGGAAGATAAGACTACAATCTTCAGTCTGCTCC-CT
* * * * **** ** * *
92375629 TGCTTCCTTAGGGAGATAAGGCTAGTGGCTAAAATCTGCTCCCC
1 TGCTACCTCAGGAAGATAAGACTACAATCTTCAGTCTGCTCCCT
* ** *
92375673 TGCTACCTCAGGAAGATAAGA-TTCGTTGTCTTCTA-TCTGCTCCAT
1 TGCTACCTCAGGAAGATAAGACTAC--AATCTTC-AGTCTGCTCCCT
* * *
92375718 TGCTACCTCATGG-AGATAAGATTTACAATCTTCAATCTGCTTCCT
1 TGCTACCTCA-GGAAGATAAGA-CTACAATCTTCAGTCTGCTCCCT
* * *
92375763 TGCTACCTCAAGAAGATAAGACTACAATC-TCTGGCCTGCTCCCT
1 TGCTACCTCAGGAAGATAAGACTACAATCTTC-AGTCTGCTCCCT
* * * ***** ** * *
92375807 TGCTACTTCAGGGAGATAAGGCTGGTGGCTAAAATCTGCTCCCC
1 TGCTACCTCAGGAAGATAAGACTACAATCTTCAGTCTGCTCCCT
** * * *
92375851 TGCTATATCAGAAAGATAAGATTCGT-C-GTCTTC-GATCTGCTCCAT
1 TGCTACCTCAGGAAGATAAGA--C-TACAATCTTCAG-TCTGCTCCCT
* * * *
92375896 TGTTGCCTCATGG-AGATAAGATCTACAATCTTCAGTCTACTTCCT
1 TGCTACCTCA-GGAAGATAAGA-CTACAATCTTCAGTCTGCTCCCT
* * * *
92375941 TTCTATCTCAGGAAGATAAGACTACAATCTTCAGCCTGC-CCTCG
1 TGCTACCTCAGGAAGATAAGACTACAATCTTCAGTCTGCTCC-CT
* * **** ** * * *
92375985 TGCTACCTTAGGGAGATAAGACTAGTGGCTAAAATCTACTCCCC
1 TGCTACCTCAGGAAGATAAGACTACAATCTTCAGTCTGCTCCCT
* * * * *
92376029 TGCTACCTC-GAGAAGATAAGATTCACCATGTTCAATCTGCTCCAT
1 TGCTACCTCAG-GAAGATAAGACT-ACAATCTTCAGTCTGCTCCCT
* * * *
92376074 TGCTACCTCATGG-AGATAAGATTTACAATCTTTAGTTTGCTTCCT
1 TGCTACCTCA-GGAAGATAAGA-CTACAATCTTCAGTCTGCTCCCT
* * ** *
92376119 TGCTACTTCAAGAAGATAAGACTACAATCTTTGGCCTGCTCCCT
1 TGCTACCTCAGGAAGATAAGACTACAATCTTCAGTCTGCTCCCT
*
92376163 TGCTACCTCGGGAAGATAAGA
1 TGCTACCTCAGGAAGATAAGA
92376184 TTTGCCGTCT
Statistics
Matches: 575, Mismatches: 161, Indels: 83
0.70 0.20 0.10
Matches are distributed among these distances:
43 10 0.02
44 296 0.51
45 254 0.44
46 11 0.02
47 4 0.01
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (44 bp):
TGCTACCTCAGGAAGATAAGACTACAATCTTCAGTCTGCTCCCT
Found at i:92375805 original size:356 final size:356
Alignment explanation
Indices: 92375273--92376182 Score: 1224
Period size: 356 Copynumber: 2.6 Consensus size: 356
92375263 CCTACTTCCT
* * * * * * * *
92375273 TGCTACTTTAGGAATATAAGACTAGTGACTTAAATCTGCTCACCTACTACCTCAGGAAGATAAAA
1 TGCTACCTTAGGGAGATAAGACTAGTGGCTAAAATCTGCTCCCCTGCTACCTCAGGAAGATAAGA
* * * * * * * *
92375338 TTTGCCG-CTTTTGATATGCCCCACTGCTATCTCGA-GGAGACAAGATCTACAATCTTCAGTTTG
66 TTCGCCGTCTTCT-ATCTGCTCCATTGCTACCTC-ATGGAGATAAGATTTACAATCTTCAGTTTG
* *** *
92375401 CTCCCTTGCTACCTCAAGAAGATAAGACTACAATCTTCAATCTGCTCCCTTGCTACCTT-AGTGA
129 CTTCCTTGCTACCTCAAGAAGATAAGACTACAATCTT-GGCCTGCTCCCTTGCTACCTTCAGGGA
* *
92375465 GATAAGGATGGTGGCTAAAATCTTGCT-CCCTGCTACCTCAGGAAGATAAGATTCGCCATATTCG
193 GATAAGGATGGTGGCTAAAATC-TGCTCCCCTGCTACATCAGAAAGATAAGATTCGCCATATTCG
* * * *
92375529 ATTTGCTCCACTGCTATCTCAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTC
257 ATCTGCTCCACTGCTACCTCAGGGAGATAAGATCTACAATCTTCAGTCTACTTCCTTGCTACCTC
92375594 AGGAAGATAAGACTACAATCTTAAGCCTGCCCTCG
322 AGGAAGATAAGACTACAATCTTAAGCCTGCCCTCG
* *
92375629 TGCTTCCTTAGGGAGATAAGGCTAGTGGCTAAAATCTGCTCCCCTGCTACCTCAGGAAGATAAGA
1 TGCTACCTTAGGGAGATAAGACTAGTGGCTAAAATCTGCTCCCCTGCTACCTCAGGAAGATAAGA
** * *
92375694 TTCGTTGTCTTCTATCTGCTCCATTGCTACCTCATGGAGATAAGATTTACAATCTTCAATCTGCT
66 TTCGCCGTCTTCTATCTGCTCCATTGCTACCTCATGGAGATAAGATTTACAATCTTCAGTTTGCT
92375759 TCCTTGCTACCTCAAGAAGATAAGACTACAATCTCTGGCCTGCTCCCTTGCTA-CTTCAGGGAGA
131 TCCTTGCTACCTCAAGAAGATAAGACTACAATCT-TGGCCTGCTCCCTTGCTACCTTCAGGGAGA
* * * * *
92375823 TAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTATATCAGAAAGATAAGATTCGTCGTCTTCGATC
195 TAAGGATGGTGGCTAAAATCTGCTCCCCTGCTACATCAGAAAGATAAGATTCGCCATATTCGATC
* * * * * *
92375888 TGCTCCATTGTTGCCTCATGGAGATAAGATCTACAATCTTCAGTCTACTTCCTTTCTATCTCAGG
260 TGCTCCACTGCTACCTCAGGGAGATAAGATCTACAATCTTCAGTCTACTTCCTTGCTACCTCAGG
*
92375953 AAGATAAGACTACAATCTTCAGCCTGCCCTCG
325 AAGATAAGACTACAATCTTAAGCCTGCCCTCG
*
92375985 TGCTACCTTAGGGAGATAAGACTAGTGGCTAAAATCTACTCCCCTGCTACCTC-GAGAAGATAAG
1 TGCTACCTTAGGGAGATAAGACTAGTGGCTAAAATCTGCTCCCCTGCTACCTCAG-GAAGATAAG
* * * * *
92376049 ATTCACCATGTTCAATCTGCTCCATTGCTACCTCATGGAGATAAGATTTACAATCTTTAGTTTGC
65 ATTCGCCGTCTTCTATCTGCTCCATTGCTACCTCATGGAGATAAGATTTACAATCTTCAGTTTGC
*
92376114 TTCCTTGCTACTTCAAGAAGATAAGACTACAATCTTTGGCCTGCTCCCTTGCTACC-TC-GGGAA
130 TTCCTTGCTACCTCAAGAAGATAAGACTACAATC-TTGGCCTGCTCCCTTGCTACCTTCAGGG-A
92376177 GATAAG
193 GATAAG
92376183 ATTTGCCGTC
Statistics
Matches: 487, Mismatches: 58, Indels: 18
0.87 0.10 0.03
Matches are distributed among these distances:
355 12 0.02
356 468 0.96
357 7 0.01
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (356 bp):
TGCTACCTTAGGGAGATAAGACTAGTGGCTAAAATCTGCTCCCCTGCTACCTCAGGAAGATAAGA
TTCGCCGTCTTCTATCTGCTCCATTGCTACCTCATGGAGATAAGATTTACAATCTTCAGTTTGCT
TCCTTGCTACCTCAAGAAGATAAGACTACAATCTTGGCCTGCTCCCTTGCTACCTTCAGGGAGAT
AAGGATGGTGGCTAAAATCTGCTCCCCTGCTACATCAGAAAGATAAGATTCGCCATATTCGATCT
GCTCCACTGCTACCTCAGGGAGATAAGATCTACAATCTTCAGTCTACTTCCTTGCTACCTCAGGA
AGATAAGACTACAATCTTAAGCCTGCCCTCG
Found at i:92376158 original size:89 final size:89
Alignment explanation
Indices: 92375373--92376184 Score: 384
Period size: 89 Copynumber: 9.1 Consensus size: 89
92375363 GCTATCTCGA
* * * * * *
92375373 GGAGACAAGATCTACAATCTTCAGTTTGCTCCCTTGCTACCTCAAGAAGATAAGACTACAATCTT
1 GGAGATAAGATCTACAATCTTAAATCTGCTTCCTTGCTACTTCAAGAAGATAAGACTACAATCTT
*** * *
92375438 CAATCTGCTCCCTTGCTACCTTAG
66 CGGCCTGCTCCATTGCTACCTCAG
* * ** * * * * * * *
92375462 TGAGATAAGGATGGT---GGCTAAAATCTTGC-TCCCTGCTACCTCAGGAAGATAAGATTCGCCA
1 GGAGATAA-GAT-CTACAATCTTAAATC-TGCTTCCTTGCTACTTCAAGAAGATAAGACT-ACAA
* *** * *
92375523 TATTCGATTTGCTCCACTGCTATCTCAG
62 TCTTCGGCCTGCTCCATTGCTACCTCAG
* * * * *
92375551 GGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAATCTT
1 GGAGATAAGATCTACAATCTTAAATCTGCTTCCTTGCTACTTCAAGAAGATAAGACTACAATCTT
** * *
92375616 AAGCCTGC-CC-TCGTGCTTCCTTAG
66 CGGCCTGCTCCAT--TGCTACCTCAG
* **** * * * * * * **
92375640 GGAGATAAG-GCTAGTGGCTAAAATCTGCTCCCCTGCTACCTCAGGAAGATAAGA-TTCGTTGTC
1 GGAGATAAGATCTACAATCTTAAATCTGCTTCCTTGCTACTTCAAGAAGATAAGACTAC--AATC
*** *
92375703 TTCTATCTGCTCCATTGCTACCTCAT
64 TTCGGCCTGCTCCATTGCTACCTCAG
* * *
92375729 GGAGATAAGATTTACAATCTTCAATCTGCTTCCTTGCTACCTCAAGAAGATAAGACTACAATC-T
1 GGAGATAAGATCTACAATCTTAAATCTGCTTCCTTGCTACTTCAAGAAGATAAGACTACAATCTT
* *
92375793 CTGGCCTGCTCCCTTGCTACTTCAG
66 C-GGCCTGCTCCATTGCTACCTCAG
* ***** * * *
92375818 GGAGATAAG-GCTGGTGGCTAAAATCTGCTCCCCTGCTA-TATC-AGAAAGATAAGATTCGT-C-
1 GGAGATAAGATCTACAATCTTAAATCTGCTTCCTTGCTACT-TCAAG-AAGATAAGA--C-TACA
* ** * * *
92375878 GTCTTCGATCTGCTCCATTGTTGCCTCAT
61 ATCTTCGGCCTGCTCCATTGCTACCTCAG
* * * * *
92375907 GGAGATAAGATCTACAATCTTCAGTCTACTTCCTTTCTA-TCTCAGGAAGATAAGACTACAATCT
1 GGAGATAAGATCTACAATCTTAAATCTGCTTCCTTGCTACT-TCAAGAAGATAAGACTACAATCT
* *
92375971 TCAGCCTGC-CC-TCGTGCTACCTTAG
65 TCGGCCTGCTCCAT--TGCTACCTCAG
**** * * * * * * * * *
92375996 GGAGATAAGA-CTAGTGGCTAAAATCTACTCCCCTGCTACCTCGAGAAGATAAGATTCACCATGT
1 GGAGATAAGATCTACAATCTTAAATCTGCTTCCTTGCTACTTCAAGAAGATAAGACT-ACAATCT
*** *
92376060 TCAATCTGCTCCATTGCTACCTCAT
65 TCGGCCTGCTCCATTGCTACCTCAG
* * * *
92376085 GGAGATAAGATTTACAATCTTTAGTTTGCTTCCTTGCTACTTCAAGAAGATAAGACTACAATCTT
1 GGAGATAAGATCTACAATCTTAAATCTGCTTCCTTGCTACTTCAAGAAGATAAGACTACAATCTT
* *
92376150 TGGCCTGCTCCCTTGCTACCTC-G
66 CGGCCTGCTCCATTGCTACCTCAG
92376173 GGAAGATAAGAT
1 GG-AGATAAGAT
92376185 TTGCCGTCTT
Statistics
Matches: 518, Mismatches: 170, Indels: 70
0.68 0.22 0.09
Matches are distributed among these distances:
87 7 0.01
88 134 0.26
89 236 0.46
90 134 0.26
91 7 0.01
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.30
Consensus pattern (89 bp):
GGAGATAAGATCTACAATCTTAAATCTGCTTCCTTGCTACTTCAAGAAGATAAGACTACAATCTT
CGGCCTGCTCCATTGCTACCTCAG
Found at i:92376182 original size:178 final size:178
Alignment explanation
Indices: 92375245--92376183 Score: 1090
Period size: 178 Copynumber: 5.3 Consensus size: 178
92375235 TTAAAGAGAC
* * * * * * * *
92375245 AAGATCTACAATCTTCAACCTACTTCCTTGCTACTTTAGGAATATAAGACTAGTGACTTAAATCT
1 AAGA-CTACAATCTTCAGCCTGCTCCCTTGCTACCTTAGGGAGATAAGACTAGTGGCTAAAATCT
* * * * * * * * * *
92375310 GCTCACCTACTACCTCAGGAAGATAAAATTTGCC-GCTTTTGATATGCCCCACTGCTATCTCGA-
65 GCTCCCCTGCTACCTCAGGAAGATAAGATTCGCCATC-TTCGATCTGCTCCATTGCTACCTC-AT
* * * *
92375373 GGAGACAAGATCTACAATCTTCAGTTTGCTCCCTTGCTACCTCAAGAAGAT
128 GGAGATAAGATTTACAATCTTCAGTCTGCTTCCTTGCTACCTCAAGAAGAT
** * *
92375424 AAGACTACAATCTTCAATCTGCTCCCTTGCTACCTTAGTGAGATAAGGA-TGGTGGCTAAAATCT
1 AAGACTACAATCTTCAGCCTGCTCCCTTGCTACCTTAGGGAGATAA-GACTAGTGGCTAAAATC-
* * * * *
92375488 TGCT-CCCTGCTACCTCAGGAAGATAAGATTCGCCATATTCGATTTGCTCCACTGCTATCTCAGG
64 TGCTCCCCTGCTACCTCAGGAAGATAAGATTCGCCATCTTCGATCTGCTCCATTGCTACCTCATG
*
92375552 GAGATAAGATCTT-CAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGAT
129 GAGATAAGAT-TTACAATCTTCAGTCTGCTTCCTTGCTACCTCAAGAAGAT
* * * *
92375602 AAGACTACAATCTTAAGCCTGC-CCTCGTGCTTCCTTAGGGAGATAAGGCTAGTGGCTAAAATCT
1 AAGACTACAATCTTCAGCCTGCTCC-CTTGCTACCTTAGGGAGATAAGACTAGTGGCTAAAATCT
*** *
92375666 GCTCCCCTGCTACCTCAGGAAGATAAGATTCGTTGTCTTCTATCTGCTCCATTGCTACCTCATGG
65 GCTCCCCTGCTACCTCAGGAAGATAAGATTCGCCATCTTCGATCTGCTCCATTGCTACCTCATGG
*
92375731 AGATAAGATTTACAATCTTCAATCTGCTTCCTTGCTACCTCAAGAAGAT
130 AGATAAGATTTACAATCTTCAGTCTGCTTCCTTGCTACCTCAAGAAGAT
* * *
92375780 AAGACTACAATC-TCTGGCCTGCTCCCTTGCTA-CTTCAGGGAGATAAGGCTGGTGGCTAAAATC
1 AAGACTACAATCTTC-AGCCTGCTCCCTTGCTACCTT-AGGGAGATAAGACTAGTGGCTAAAATC
** * * * * *
92375843 TGCTCCCCTGCTATATCAGAAAGATAAGATTCGTCGTCTTCGATCTGCTCCATTGTTGCCTCATG
64 TGCTCCCCTGCTACCTCAGGAAGATAAGATTCGCCATCTTCGATCTGCTCCATTGCTACCTCATG
* * * * *
92375908 GAGATAAGATCTACAATCTTCAGTCTACTTCCTTTCTATCTCAGGAAGAT
129 GAGATAAGATTTACAATCTTCAGTCTGCTTCCTTGCTACCTCAAGAAGAT
*
92375958 AAGACTACAATCTTCAGCCTGC-CCTCGTGCTACCTTAGGGAGATAAGACTAGTGGCTAAAATCT
1 AAGACTACAATCTTCAGCCTGCTCC-CTTGCTACCTTAGGGAGATAAGACTAGTGGCTAAAATCT
* * * *
92376022 ACTCCCCTGCTACCTC-GAGAAGATAAGATTCACCATGTTCAATCTGCTCCATTGCTACCTCATG
65 GCTCCCCTGCTACCTCAG-GAAGATAAGATTCGCCATCTTCGATCTGCTCCATTGCTACCTCATG
* * *
92376086 GAGATAAGATTTACAATCTTTAGTTTGCTTCCTTGCTACTTCAAGAAGAT
129 GAGATAAGATTTACAATCTTCAGTCTGCTTCCTTGCTACCTCAAGAAGAT
** *
92376136 AAGACTACAATCTTTGGCCTGCTCCCTTGCTACC-TCGGGAAGATAAGA
1 AAGACTACAATCTTCAGCCTGCTCCCTTGCTACCTTAGGG-AGATAAGA
92376184 TTTGCCGTCT
Statistics
Matches: 654, Mismatches: 88, Indels: 37
0.84 0.11 0.05
Matches are distributed among these distances:
177 21 0.03
178 613 0.94
179 20 0.03
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.30
Consensus pattern (178 bp):
AAGACTACAATCTTCAGCCTGCTCCCTTGCTACCTTAGGGAGATAAGACTAGTGGCTAAAATCTG
CTCCCCTGCTACCTCAGGAAGATAAGATTCGCCATCTTCGATCTGCTCCATTGCTACCTCATGGA
GATAAGATTTACAATCTTCAGTCTGCTTCCTTGCTACCTCAAGAAGAT
Found at i:92377501 original size:19 final size:20
Alignment explanation
Indices: 92377477--92377521 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
92377467 TAGAATAAAT
*
92377477 TTTTTTATTTTTTC-TTTGA
1 TTTTTTACTTTTTCTTTTGA
*
92377496 TTTTTT-CTTTTTCTTTTTA
1 TTTTTTACTTTTTCTTTTGA
92377515 TTTTTTA
1 TTTTTTA
92377522 AGGTTTCAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 6 0.27
19 16 0.73
ACGTcount: A:0.09, C:0.07, G:0.02, T:0.82
Consensus pattern (20 bp):
TTTTTTACTTTTTCTTTTGA
Found at i:92378105 original size:6 final size:6
Alignment explanation
Indices: 92378096--92378124 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
92378086 TCTCTTTCTC
92378096 TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
92378125 TTGTACCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTTA
Found at i:92386863 original size:27 final size:27
Alignment explanation
Indices: 92386833--92387010 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
92386823 ATATTGAGTC
* * * *
92386833 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
92386860 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
92386887 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
92386915 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
92386942 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
92386969 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
92386996 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
92387011 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:92386972 original size:82 final size:81
Alignment explanation
Indices: 92386854--92387009 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
92386844 TGCTATATAA
* *
92386854 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
92386919 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
92386936 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
92387000 CACTTAGTGC
65 CACTTAGTGC
92387010 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:92391460 original size:27 final size:27
Alignment explanation
Indices: 92391430--92391516 Score: 124
Period size: 27 Copynumber: 3.2 Consensus size: 27
92391420 GTGACGAAGT
92391430 CACCAGATACAAATATTGTGGCAGAGC
1 CACCAGATACAAATATTGTGGCAGAGC
*
92391457 CACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGATACAAATAT-TGTGGCAGAGC
*
92391484 CACCAGAT-CAAATAATTGTGGCATAGC
1 CACCAGATACAAAT-ATTGTGGCAGAGC
92391511 CACCAG
1 CACCAG
92391517 GACGCTTCCT
Statistics
Matches: 54, Mismatches: 3, Indels: 6
0.86 0.05 0.10
Matches are distributed among these distances:
26 7 0.13
27 45 0.83
28 2 0.04
ACGTcount: A:0.37, C:0.24, G:0.22, T:0.17
Consensus pattern (27 bp):
CACCAGATACAAATATTGTGGCAGAGC
Found at i:92393112 original size:50 final size:50
Alignment explanation
Indices: 92393054--92393154 Score: 193
Period size: 50 Copynumber: 2.0 Consensus size: 50
92393044 CCCCTTTTTC
92393054 TTTTAATAAAACTTCATATTTCATCCATTTAATTCTTTAATACAAAAGCA
1 TTTTAATAAAACTTCATATTTCATCCATTTAATTCTTTAATACAAAAGCA
*
92393104 TTTTAATAAAATTTCATATTTCATCCATTTAATTCTTTAATACAAAAGCA
1 TTTTAATAAAACTTCATATTTCATCCATTTAATTCTTTAATACAAAAGCA
92393154 T
1 T
92393155 GAAATGCCCA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.40, C:0.15, G:0.02, T:0.44
Consensus pattern (50 bp):
TTTTAATAAAACTTCATATTTCATCCATTTAATTCTTTAATACAAAAGCA
Found at i:92393194 original size:26 final size:26
Alignment explanation
Indices: 92393164--92393945 Score: 1555
Period size: 26 Copynumber: 30.1 Consensus size: 26
92393154 TGAAATGCCC
92393164 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
92393190 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
92393216 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
92393242 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
92393268 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
92393294 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
92393320 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
92393346 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
92393372 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
92393398 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
92393424 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
92393450 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
92393476 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
92393502 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
92393528 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
92393554 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
92393580 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
92393606 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
92393632 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
92393658 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
92393684 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
92393710 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
92393736 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
92393762 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
92393788 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
92393814 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
92393840 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
92393866 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
92393892 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
92393918 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
92393944 AT
1 AT
92393946 AATTTTTTAT
Statistics
Matches: 755, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 755 1.00
ACGTcount: A:0.35, C:0.27, G:0.08, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:92400155 original size:27 final size:27
Alignment explanation
Indices: 92400107--92400265 Score: 148
Period size: 27 Copynumber: 5.9 Consensus size: 27
92400097 GCGAGGTTGC
* *
92400107 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
92400134 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
92400160 TAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * * *
92400187 TAGATAATTGTGCCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
92400214 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * *
92400241 TAGATAATTGTGGCATAGCCTCCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
92400266 GACACTTCCT
Statistics
Matches: 111, Mismatches: 13, Indels: 16
0.79 0.09 0.11
Matches are distributed among these distances:
26 9 0.08
27 97 0.87
28 5 0.05
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:92400266 original size:54 final size:54
Alignment explanation
Indices: 92400125--92400269 Score: 220
Period size: 54 Copynumber: 2.7 Consensus size: 54
92400115 GTGACGAAGT
* * * *
92400125 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAATAGATATATGTGGCAGAGC
1 CACCAGAT-TAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
*
92400179 CACCAGATTAGATAATTGTGCCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATTAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
*
92400233 CACCAGATTAGATAATTGTGGCATAGCCTCCAGGACA
1 CACCAGATTAGATAATTGTGGCATAGCCACCAGGACA
92400270 CTTCCTCCAT
Statistics
Matches: 83, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
53 4 0.05
54 79 0.95
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.20
Consensus pattern (54 bp):
CACCAGATTAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:92401842 original size:36 final size:36
Alignment explanation
Indices: 92401800--92401875 Score: 143
Period size: 36 Copynumber: 2.1 Consensus size: 36
92401790 TTATTTTAAT
92401800 AAAATTTCATATTTCATCCATTTAATTCTTTAATAC
1 AAAATTTCATATTTCATCCATTTAATTCTTTAATAC
*
92401836 AAAATTTCATTTTTCATCCATTTAATTCTTTAATAC
1 AAAATTTCATATTTCATCCATTTAATTCTTTAATAC
92401872 AAAA
1 AAAA
92401876 GACATGAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.38, C:0.16, G:0.00, T:0.46
Consensus pattern (36 bp):
AAAATTTCATATTTCATCCATTTAATTCTTTAATAC
Found at i:92401925 original size:26 final size:26
Alignment explanation
Indices: 92401889--92401943 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
92401879 ATGAAATGCC
92401889 TATCATGGAACATTTACCTAACCCAT
1 TATCATGGAACATTTACCTAACCCAT
92401915 TATCATGGAACATTTACCTAACCCAT
1 TATCATGGAACATTTACCTAACCCAT
92401941 TAT
1 TAT
92401944 AATTTTTTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.35, C:0.25, G:0.07, T:0.33
Consensus pattern (26 bp):
TATCATGGAACATTTACCTAACCCAT
Found at i:92405121 original size:19 final size:19
Alignment explanation
Indices: 92405097--92405135 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
92405087 TGAAACTTTT
92405097 AATAATTGATTAAAATTAA
1 AATAATTGATTAAAATTAA
*
92405116 AATAATTGGTTAAAATTAA
1 AATAATTGATTAAAATTAA
92405135 A
1 A
92405136 TCAAGAGTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36
Consensus pattern (19 bp):
AATAATTGATTAAAATTAA
Found at i:92406628 original size:55 final size:55
Alignment explanation
Indices: 92406544--92406653 Score: 202
Period size: 55 Copynumber: 2.0 Consensus size: 55
92406534 AAGAGTTTAG
*
92406544 ACCGAATTTCGGAGGTCACATTGATCACCGAAGTGATCTGAAACAATTTTACAAA
1 ACCGAATTTCAGAGGTCACATTGATCACCGAAGTGATCTGAAACAATTTTACAAA
*
92406599 ACCGAATTTCAGAGGTCACATTGATCACCGAAGTGATCTGAAATAATTTTACAAA
1 ACCGAATTTCAGAGGTCACATTGATCACCGAAGTGATCTGAAACAATTTTACAAA
92406654 TGAGTTATTA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.26
Consensus pattern (55 bp):
ACCGAATTTCAGAGGTCACATTGATCACCGAAGTGATCTGAAACAATTTTACAAA
Found at i:92411020 original size:6 final size:6
Alignment explanation
Indices: 92411005--92411047 Score: 50
Period size: 6 Copynumber: 6.7 Consensus size: 6
92410995 TTCATATCAC
*
92411005 AAAAAT AAAAAG AAAAAT AAAAAT AAAACAAAT AAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT --AA-AAAT AAAAAT AAAA
92411048 TCTGACCTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
6 24 0.75
7 2 0.06
8 2 0.06
9 4 0.12
ACGTcount: A:0.84, C:0.02, G:0.02, T:0.12
Consensus pattern (6 bp):
AAAAAT
Found at i:92411039 original size:15 final size:15
Alignment explanation
Indices: 92411019--92411047 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
92411009 ATAAAAAGAA
92411019 AAATAAAAATAAAAC
1 AAATAAAAATAAAAC
92411034 AAATAAAAATAAAA
1 AAATAAAAATAAAA
92411048 TCTGACCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.83, C:0.03, G:0.00, T:0.14
Consensus pattern (15 bp):
AAATAAAAATAAAAC
Found at i:92417756 original size:14 final size:13
Alignment explanation
Indices: 92417740--92417764 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
92417730 TAGATTATAT
92417740 TTTTCTTTTATTA
1 TTTTCTTTTATTA
92417753 TTTTCTTTTATT
1 TTTTCTTTTATT
92417765 TCTTTTTACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.08, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTCTTTTATTA
Found at i:92418433 original size:13 final size:13
Alignment explanation
Indices: 92418415--92418440 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
92418405 TGTGTGGGCC
92418415 CACACGAGCATGT
1 CACACGAGCATGT
92418428 CACACGAGCATGT
1 CACACGAGCATGT
92418441 GGATTTTAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.31, G:0.23, T:0.15
Consensus pattern (13 bp):
CACACGAGCATGT
Found at i:92428337 original size:71 final size:70
Alignment explanation
Indices: 92428248--92428391 Score: 236
Period size: 70 Copynumber: 2.0 Consensus size: 70
92428238 TTCTTTCTTC
*
92428248 AATTTAGTATATTTTATTACTTTTAATTTTAATTTTATTTCAAATTCATTATAAAAAA-ATTAAA
1 AATTTAGTATATTGTATTACTTTTAATTTTAA-TTTATTTCAAATTCATTATAAAAAATATT-AA
92428312 AATTAAA
64 AATTAAA
* *
92428319 AATTTAGTATATTGTATTACTTTTAATTTTAATTTATTTCAAATTTATTATAAAAAATATTAATA
1 AATTTAGTATATTGTATTACTTTTAATTTTAATTTATTTCAAATTCATTATAAAAAATATTAAAA
92428384 TTAAA
66 TTAAA
92428389 AAT
1 AAT
92428392 CAAAAAATTT
Statistics
Matches: 69, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
70 35 0.51
71 34 0.49
ACGTcount: A:0.44, C:0.03, G:0.02, T:0.50
Consensus pattern (70 bp):
AATTTAGTATATTGTATTACTTTTAATTTTAATTTATTTCAAATTCATTATAAAAAATATTAAAA
TTAAA
Found at i:92428624 original size:24 final size:24
Alignment explanation
Indices: 92428573--92428635 Score: 65
Period size: 24 Copynumber: 2.5 Consensus size: 24
92428563 TTTATTCGAG
*
92428573 TTTTAAATATTAATGGGTATTGGG
1 TTTTAAATATTAATGGGTATTGGC
* *
92428597 TTTTAAATTTTAATTGGT-TTAGGC
1 TTTTAAATATTAATGGGTATT-GGC
92428621 TTTTAAGAGTATTAA
1 TTTTAA-A-TATTAA
92428636 GTTCTAATAG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
23 2 0.06
24 24 0.75
25 1 0.03
26 5 0.16
ACGTcount: A:0.30, C:0.02, G:0.19, T:0.49
Consensus pattern (24 bp):
TTTTAAATATTAATGGGTATTGGC
Found at i:92429310 original size:25 final size:25
Alignment explanation
Indices: 92429263--92429310 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
92429253 TTGGTTAATC
* *
92429263 AAAGTTTAATTGTGAAACTAAAAAT
1 AAAGTTTAATTGGGAAACGAAAAAT
92429288 AAAGTTTAATTGGGAGAA-GAAAA
1 AAAGTTTAATTGGGA-AACGAAAA
92429311 CCGAAAAACT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 18 0.90
26 2 0.10
ACGTcount: A:0.52, C:0.02, G:0.19, T:0.27
Consensus pattern (25 bp):
AAAGTTTAATTGGGAAACGAAAAAT
Found at i:92432015 original size:40 final size:40
Alignment explanation
Indices: 92431944--92432019 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
92431934 CGGTACCTTA
* *
92431944 TGGTGTGTAGGGTTGGATAGGTTGATATTATCCCCATATT
1 TGGTGTGTAGGGATGGATAGGTCGATATTATCCCCATATT
* * *
92431984 TGGTGTGTAGGGATGGGTGGGTCGATTTTATCCCCA
1 TGGTGTGTAGGGATGGATAGGTCGATATTATCCCCA
92432020 CATGGTGTGT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.17, C:0.12, G:0.34, T:0.37
Consensus pattern (40 bp):
TGGTGTGTAGGGATGGATAGGTCGATATTATCCCCATATT
Found at i:92433133 original size:47 final size:48
Alignment explanation
Indices: 92433064--92433186 Score: 160
Period size: 49 Copynumber: 2.6 Consensus size: 48
92433054 AATACTGATT
* * * *
92433064 CCATGTCCCAGACATGGTCTTACACTAGCCCATC-CATC-AAGTCGATG
1 CCATGTCCCATACATGGTCTTACACT-GACCATCAAATCGAAGCCGATG
* *
92433111 CCATGTCCCATACATGGTCTTACACTGACTATCGAAATCGAGGCCGATG
1 CCATGTCCCATACATGGTCTTACACTGACCATC-AAATCGAAGCCGATG
92433160 CCATGTCCCATACATGGTCTTACACTG
1 CCATGTCCCATACATGGTCTTACACTG
92433187 GCTTACATCT
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
46 5 0.07
47 25 0.37
48 3 0.04
49 34 0.51
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (48 bp):
CCATGTCCCATACATGGTCTTACACTGACCATCAAATCGAAGCCGATG
Found at i:92433276 original size:94 final size:94
Alignment explanation
Indices: 92433157--92433328 Score: 249
Period size: 94 Copynumber: 1.8 Consensus size: 94
92433147 ATCGAGGCCG
* * *
92433157 ATGCCATGTCCCATACATGGTCTTACACTGGCT-TACAT-CTCGAGGCCGATATATATCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTGCCTCT-CATAAT-GAGGCCGATATATATCCCAGAC
92433220 ATGTCTTACACTAGCTCTTGTCTTAATGCCA
64 ATGTCTTACACTAGCTCTTGTCTTAATGCCA
* * * *
92433251 ATGCCATGTCCCAGACATGGTCTTACACTGCCTCTCATAATGTGGCCGATGTATGTCCCAGATAT
1 ATGCCATGTCCCAGACATGGTCTTACACTGCCTCTCATAATGAGGCCGATATATATCCCAGACAT
92433316 GTCTTACACTAGC
66 GTCTTACACTAGC
92433329 ACACAAATGA
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
94 67 0.97
95 2 0.03
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.30
Consensus pattern (94 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGCCTCTCATAATGAGGCCGATATATATCCCAGACAT
GTCTTACACTAGCTCTTGTCTTAATGCCA
Found at i:92433307 original size:47 final size:48
Alignment explanation
Indices: 92433064--92433325 Score: 176
Period size: 47 Copynumber: 5.5 Consensus size: 48
92433054 AATACTGATT
92433064 CCATGTCCCAGACATGGTCTTACACTAGCC-CATCCATCAA-GT---CGATG
1 CCATGTCCCAGACATGGTCTTACACT-GCCTC-T-CAT-AATGTGGCCGATG
* * * *
92433111 CCATGTCCCATACATGGTCTTACACTGACTATCGA-AATCGAGGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTGCCTCTC-ATAAT-GTGGCCGATG
* * * *
92433160 CCATGTCCCATACATGGTCTTACACTGGCT-TACAT-CTCGAGGCCGAT-
1 CCATGTCCCAGACATGGTCTTACACTGCCTCT-CATAAT-GTGGCCGATG
** * * * *
92433207 ATATATCCCAGACAT-GTCTTACACTAGCTCTTGTCTTAA--T-GCCAATG
1 CCATGTCCCAGACATGGTCTTACACT-GC-C-TCTCATAATGTGGCCGATG
92433254 CCATGTCCCAGACATGGTCTTACACTGCCTCTCATAATGTGGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTGCCTCTCATAATGTGGCCGATG
* *
92433302 -TATGTCCCAGATAT-GTCTTACACT
1 CCATGTCCCAGACATGGTCTTACACT
92433326 AGCACACAAA
Statistics
Matches: 173, Mismatches: 23, Indels: 39
0.74 0.10 0.17
Matches are distributed among these distances:
44 2 0.01
45 7 0.04
46 31 0.18
47 64 0.37
48 30 0.17
49 38 0.22
50 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (48 bp):
CCATGTCCCAGACATGGTCTTACACTGCCTCTCATAATGTGGCCGATG
Found at i:92437759 original size:27 final size:27
Alignment explanation
Indices: 92437718--92437771 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
92437708 TGTCTTGTGA
* *
92437718 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
92437745 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
92437772 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:92438227 original size:99 final size:100
Alignment explanation
Indices: 92438025--92438304 Score: 386
Period size: 99 Copynumber: 2.8 Consensus size: 100
92438015 TGAGGTCATG
92438025 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAAGTG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAAGTG
* * **
92438090 -AAGCTACTATGCATACCCGATAACTTCGATCATG
66 CAGGCTACTACGCATACCCGATAACTTCGATCACA
* ** * *
92438124 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCGCATGTGTAGTACTAAGT
** * * *
92438189 GCAGGCTACTACGTGTACCGGATAA-TT-GGTCGCA
65 GCAGGCTACTACGCATACCCGATAACTTCGATCACA
*
92438223 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAAGTG
*
92438288 CAGGCTACTATGCATAC
66 CAGGCTACTACGCATAC
92438305 TAGATAGCCT
Statistics
Matches: 156, Mismatches: 23, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
98 35 0.22
99 80 0.51
100 23 0.15
101 18 0.12
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (100 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAAGTG
CAGGCTACTACGCATACCCGATAACTTCGATCACA
Found at i:92438246 original size:49 final size:49
Alignment explanation
Indices: 92438025--92438297 Score: 368
Period size: 49 Copynumber: 5.5 Consensus size: 49
92438015 TGAGGTCATG
92438025 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* * ** * * ***
92438074 TGTGTAGTACTAAGTG-AAGCTACTATGCATACCCGATAACTTCGATCATG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT-GGTCGCA
* ** * *
92438124 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCGCA
*
92438174 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
*
92438223 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
92438272 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
92438298 TGCATACTAG
Statistics
Matches: 195, Mismatches: 26, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
48 18 0.09
49 98 0.50
50 64 0.33
51 15 0.08
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
Found at i:92438343 original size:149 final size:147
Alignment explanation
Indices: 92438019--92438302 Score: 358
Period size: 149 Copynumber: 1.9 Consensus size: 147
92438009 CTATTGTGAG
* * *
92438019 GTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTAC
1 GTCAAGTGTGTAGAAATAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTAC
* **
92438084 TAAGTGAAGCTACTATGCATACCCGATAACTTCGATCATGTGTGTAGTACTAAGTGCAGGCTACT
66 TAAGTGAAGCTACTACGCATACCCGATAACTTCGATCACATGTGTAGTACTAAGTGCAGGCTACT
* *
92438149 ACGTGTATCAGATGGTTA
131 AC-TGCATCAGATGCTTA
* * * *
92438167 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTA
1 -GTCAAGTGTGTAGAAATAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTA
* ** * * *
92438232 CTAAGTGCAGGCTACTACGTGTACCGGATAA-TT-GGTCGCATGTGTAGTACTAAGTGCAGGCTA
65 CTAAGTG-AAGCTACTACGCATACCCGATAACTTCGATCACATGTGTAGTACTAAGTGCAGGCTA
92438295 CTA-TGCAT
129 CTACTGCAT
92438303 ACTAGATAGC
Statistics
Matches: 122, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
146 4 0.03
148 29 0.24
149 71 0.58
150 18 0.15
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (147 bp):
GTCAAGTGTGTAGAAATAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTAC
TAAGTGAAGCTACTACGCATACCCGATAACTTCGATCACATGTGTAGTACTAAGTGCAGGCTACT
ACTGCATCAGATGCTTA
Found at i:92443505 original size:34 final size:34
Alignment explanation
Indices: 92443462--92443529 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
92443452 TGAAAATTAT
92443462 TATTATGGGAAAGGGCAAGTCGAAACTAGTCTCA
1 TATTATGGGAAAGGGCAAGTCGAAACTAGTCTCA
92443496 TATTATGGGAAAGGGCAAGTCGAAACTAGTCTCA
1 TATTATGGGAAAGGGCAAGTCGAAACTAGTCTCA
92443530 ACTAGGACTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.35, C:0.15, G:0.26, T:0.24
Consensus pattern (34 bp):
TATTATGGGAAAGGGCAAGTCGAAACTAGTCTCA
Found at i:92452653 original size:13 final size:13
Alignment explanation
Indices: 92452635--92452660 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
92452625 ATAATTAAAT
92452635 AATTTTTTTTTTG
1 AATTTTTTTTTTG
92452648 AATTTTTTTTTTG
1 AATTTTTTTTTTG
92452661 GTTCACTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.08, T:0.77
Consensus pattern (13 bp):
AATTTTTTTTTTG
Found at i:92452862 original size:125 final size:125
Alignment explanation
Indices: 92452731--92452971 Score: 351
Period size: 125 Copynumber: 1.9 Consensus size: 125
92452721 CCTCTTTAAG
* * * * *
92452731 TAGAATTTGAAAAAGAAAATTCATCTTTTGAAATCTCCTTTTGAAATTACTCACAAGTT-TGAAA
1 TAGAATTTGAAAAAGAAAATTCAGCTGTTGAAATCCCCTTTTAAAATTACTCACAAGTTCTAAAA
*
92452795 TTTTCCAATATATTTACCCAAAAAAG-AAATTTCATTTTTAGAATTTTTGAAAACCTTTAGT
66 TTTTCCAATATATTTACCCAAAAAAGTAAATTT-ATTTTTA-AAATTTTGAAAACCTTTAGT
* *
92452856 TAGAATTTGGAAAAGAAAATTGAGCTGTTGAAATCCCCTTTTAAAATTACTCACAAGTTCTAAAA
1 TAGAATTTGAAAAAGAAAATTCAGCTGTTGAAATCCCCTTTTAAAATTACTCACAAGTTCTAAAA
* * *
92452921 TTTTTCAATATTTTTACCCAAACAAGTAAATTTATTTTTAAAATTTTGAAA
66 TTTTCCAATATATTTACCCAAAAAAGTAAATTTATTTTTAAAATTTTGAAA
92452972 TCTTTCTTAA
Statistics
Matches: 103, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
125 63 0.61
126 34 0.33
127 6 0.06
ACGTcount: A:0.40, C:0.12, G:0.09, T:0.39
Consensus pattern (125 bp):
TAGAATTTGAAAAAGAAAATTCAGCTGTTGAAATCCCCTTTTAAAATTACTCACAAGTTCTAAAA
TTTTCCAATATATTTACCCAAAAAAGTAAATTTATTTTTAAAATTTTGAAAACCTTTAGT
Found at i:92454628 original size:16 final size:16
Alignment explanation
Indices: 92454590--92454628 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
92454580 CTCCAAAAAA
*
92454590 AAAAACTAGCCTTTCC
1 AAAAACTAGCCTTTAC
92454606 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTTTAC
*
92454622 AATAACT
1 AAAAACT
92454629 CTTCTCCTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.44, C:0.26, G:0.05, T:0.26
Consensus pattern (16 bp):
AAAAACTAGCCTTTAC
Found at i:92454822 original size:30 final size:30
Alignment explanation
Indices: 92454779--92454854 Score: 109
Period size: 30 Copynumber: 2.5 Consensus size: 30
92454769 TCATTTGTAG
92454779 GTACAAGTA-GTGGTGGAGCAAGTGTGGCTA
1 GTAC-AGTAGGTGGTGGAGCAAGTGTGGCTA
92454809 GTACAGTAGGTGGTGGAGCAAGTGTGGCTA
1 GTACAGTAGGTGGTGGAGCAAGTGTGGCTA
** *
92454839 GTGGAGTTGGTGGTGG
1 GTACAGTAGGTGGTGG
92454855 GAAAGGCTAG
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
29 4 0.10
30 38 0.90
ACGTcount: A:0.21, C:0.08, G:0.46, T:0.25
Consensus pattern (30 bp):
GTACAGTAGGTGGTGGAGCAAGTGTGGCTA
Found at i:92455180 original size:40 final size:40
Alignment explanation
Indices: 92455125--92455201 Score: 127
Period size: 40 Copynumber: 1.9 Consensus size: 40
92455115 ACATACCATG
*
92455125 TGGGGATAGAATCAACCCACCCAGCCCTACACACCAAGTA
1 TGGGGATAGAATCAACCCACCCAACCCTACACACCAAGTA
* *
92455165 TGGGGATATAATCAACCCATCCAACCCTACACACCAA
1 TGGGGATAGAATCAACCCACCCAACCCTACACACCAA
92455202 ATGGTACCGT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.36, C:0.35, G:0.14, T:0.14
Consensus pattern (40 bp):
TGGGGATAGAATCAACCCACCCAACCCTACACACCAAGTA
Found at i:92457573 original size:40 final size:40
Alignment explanation
Indices: 92457466--92457686 Score: 127
Period size: 40 Copynumber: 5.5 Consensus size: 40
92457456 TATTCGAATG
* * * * *
92457466 ATATCCGAGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGA-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGC-A-GAGATCT
* * * * *
92457507 ATAACCGGACTAAGATCTGAAGGCATTCGTG-AGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGAGAT-CT
* * *
92457547 ATATCCGGGCTAAGACCCGAACGCATTTGTGCTAGCGAT-T
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGAGATCT
* ** * *
92457587 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGA-CC
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGAGATCT
* *
92457627 ACATCCGGGCTAAGACCCGAAGGCCTT-GTGCA-AGTAGT-T
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGAG-A-TCT
92457666 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
92457687 ATTTCTTGAG
Statistics
Matches: 141, Mismatches: 30, Indels: 21
0.73 0.16 0.11
Matches are distributed among these distances:
37 2 0.01
38 17 0.12
39 9 0.06
40 86 0.61
41 23 0.16
42 4 0.03
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGAGATCT
Found at i:92460233 original size:60 final size:60
Alignment explanation
Indices: 92460166--92460297 Score: 160
Period size: 61 Copynumber: 2.2 Consensus size: 60
92460156 CCAATGACCA
* * * *
92460166 TAAAAAGACAAAATTA-AATAGTTAGGTAACCATTTTGTATC-TTTTCATAGTTGGGTGAT
1 TAAAAA-AGAAAATTACAATAGTTAGGTAACCATTTTGTAACTTTTTCATAGTTGAGTGAC
* * *
92460225 TAAAAAAGAAAATTACTAATAGTTTGGTGACCATTTTGTAACTTTTTTATAGTTGAGTGAC
1 TAAAAAAGAAAATTAC-AATAGTTAGGTAACCATTTTGTAACTTTTTCATAGTTGAGTGAC
*
92460286 TAAAAAATAAAA
1 TAAAAAAGAAAA
92460298 AAAAAAGATA
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
58 8 0.13
59 6 0.10
60 22 0.35
61 26 0.42
ACGTcount: A:0.41, C:0.08, G:0.15, T:0.36
Consensus pattern (60 bp):
TAAAAAAGAAAATTACAATAGTTAGGTAACCATTTTGTAACTTTTTCATAGTTGAGTGAC
Found at i:92462478 original size:6 final size:6
Alignment explanation
Indices: 92462438--92462506 Score: 54
Period size: 6 Copynumber: 11.5 Consensus size: 6
92462428 TTATTTCATT
* * * *
92462438 TTTCAC TTTCCC TTTCCC TTTCCC TTTCTC TTTCTC TTTCTC GTTTC-C
1 TTTCTC TTTCTC TTTCTC TTTCTC TTTCTC TTTCTC TTTCTC -TTTCTC
92462486 ATTT-TC TTTTCTC TTT-TC TTT
1 -TTTCTC -TTTCTC TTTCTC TTT
92462507 TTTCTTTTCT
Statistics
Matches: 56, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
5 5 0.09
6 45 0.80
7 6 0.11
ACGTcount: A:0.03, C:0.33, G:0.01, T:0.62
Consensus pattern (6 bp):
TTTCTC
Found at i:92462478 original size:12 final size:12
Alignment explanation
Indices: 92462438--92462494 Score: 62
Period size: 12 Copynumber: 4.8 Consensus size: 12
92462428 TTATTTCATT
*
92462438 TTTCACTTTCCC
1 TTTCTCTTTCCC
*
92462450 TTTCCCTTTCCC
1 TTTCTCTTTCCC
*
92462462 TTTCTCTTTCTC
1 TTTCTCTTTCCC
*
92462474 TTTCTCGTTTCCA
1 TTTCTC-TTTCCC
92462487 TTT-TCTTT
1 TTTCTCTTT
92462495 TCTCTTTTCT
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
11 3 0.08
12 29 0.74
13 7 0.18
ACGTcount: A:0.04, C:0.35, G:0.02, T:0.60
Consensus pattern (12 bp):
TTTCTCTTTCCC
Found at i:92462496 original size:12 final size:12
Alignment explanation
Indices: 92462462--92462519 Score: 64
Period size: 12 Copynumber: 4.7 Consensus size: 12
92462452 TCCCTTTCCC
92462462 TTTCTCTTTCTCT
1 TTTCT-TTTCTCT
*
92462475 TTCTCGTTTC-CAT
1 TT-TCTTTTCTC-T
92462488 TTTCTTTTCTCT
1 TTTCTTTTCTCT
*
92462500 TTTCTTTTTTCT
1 TTTCTTTTCTCT
92462512 TTTCTTTT
1 TTTCTTTT
92462520 AATTCTCCTC
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
12 27 0.69
13 10 0.26
14 2 0.05
ACGTcount: A:0.02, C:0.24, G:0.02, T:0.72
Consensus pattern (12 bp):
TTTCTTTTCTCT
Found at i:92462496 original size:19 final size:19
Alignment explanation
Indices: 92462468--92462516 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
92462458 TCCCTTTCTC
92462468 TTTCTCTTTCTCGTTTCCAT
1 TTTCT-TTTCTCGTTTCCAT
* **
92462488 TTTCTTTTCTCTTTTCTTT
1 TTTCTTTTCTCGTTTCCAT
92462507 TTTCTTTTCT
1 TTTCTTTTCT
92462517 TTTAATTCTC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 21 0.81
20 5 0.19
ACGTcount: A:0.02, C:0.24, G:0.02, T:0.71
Consensus pattern (19 bp):
TTTCTTTTCTCGTTTCCAT
Found at i:92462500 original size:7 final size:7
Alignment explanation
Indices: 92462462--92462516 Score: 50
Period size: 6 Copynumber: 8.7 Consensus size: 7
92462452 TCCCTTTCCC
92462462 TTTCTC-
1 TTTCTCT
92462468 TTTCTC-
1 TTTCTCT
*
92462474 TTTCTCG
1 TTTCTCT
*
92462481 TTTC-CA
1 TTTCTCT
92462487 TTT-TCT
1 TTTCTCT
92462493 TTTCTCT
1 TTTCTCT
92462500 TTTCT-T
1 TTTCTCT
92462506 TTT-TCT
1 TTTCTCT
92462512 TTTCT
1 TTTCT
92462517 TTTAATTCTC
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
5 1 0.02
6 28 0.67
7 13 0.31
ACGTcount: A:0.02, C:0.25, G:0.02, T:0.71
Consensus pattern (7 bp):
TTTCTCT
Found at i:92463296 original size:19 final size:19
Alignment explanation
Indices: 92463257--92463305 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
92463247 CTTTTCAAAG
* *
92463257 GAACCTAGAAATGTTGGAT
1 GAACCTAGAAATATTGAAT
*
92463276 GAACCTAGAAATATTTAAT
1 GAACCTAGAAATATTGAAT
*
92463295 GAACCCAGAAA
1 GAACCTAGAAA
92463306 AGAAAAAGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.45, C:0.14, G:0.18, T:0.22
Consensus pattern (19 bp):
GAACCTAGAAATATTGAAT
Found at i:92465269 original size:36 final size:32
Alignment explanation
Indices: 92465217--92465327 Score: 79
Period size: 31 Copynumber: 3.4 Consensus size: 32
92465207 TTCATTTTAC
*
92465217 TTATA-ATTTAAT-TTATTTTTT-ATTTTAATA
1 TTATATATTTTATGTTATTTTTTAATTTTAA-A
*
92465247 TCATATATATTTCATGTGTTATTATTATTAATTTTAAA
1 T--TATATATTT--TATGTTATT-TT-TTAATTTTAAA
* *
92465285 TTATATATTTTATGTTA-TTTTTAAATATATAA
1 TTATATATTTTATGTTATTTTTTAATTTTA-AA
92465317 TT-TATATTTTA
1 TTATATATTTTA
92465328 AACATTTGGT
Statistics
Matches: 66, Mismatches: 5, Indels: 19
0.73 0.06 0.21
Matches are distributed among these distances:
30 1 0.02
31 16 0.24
32 10 0.15
33 5 0.08
34 6 0.09
35 1 0.02
36 14 0.21
37 2 0.03
38 4 0.06
39 7 0.11
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.61
Consensus pattern (32 bp):
TTATATATTTTATGTTATTTTTTAATTTTAAA
Found at i:92465293 original size:24 final size:23
Alignment explanation
Indices: 92465266--92465320 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 23
92465256 TTTCATGTGT
92465266 TATTATTA-TTAATTTTAAATTATA
1 TATT-TTAGTTAATTTTAAA-TATA
*
92465290 TATTTTATGTTATTTTTAAATATA
1 TATTTTA-GTTAATTTTAAATATA
*
92465314 TAATTTA
1 TATTTTA
92465321 TATTTTAAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 3 0.11
24 14 0.52
25 10 0.37
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (23 bp):
TATTTTAGTTAATTTTAAATATA
Found at i:92468294 original size:40 final size:40
Alignment explanation
Indices: 92468250--92468434 Score: 300
Period size: 40 Copynumber: 4.6 Consensus size: 40
92468240 GCGATTCGTT
*
92468250 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
92468290 CAAATGCCTTCGGGACTTAGCCCAGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
92468330 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
92468370 CAAATGCCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
*
92468410 CAAATGCCTTCAGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
92468435 TTATCATCCG
Statistics
Matches: 136, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
39 1 0.01
40 135 0.99
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:92486300 original size:14 final size:14
Alignment explanation
Indices: 92486278--92486308 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
92486268 GAAAAATGGT
*
92486278 CCGATTGAACCGAA
1 CCGAGTGAACCGAA
92486292 CCGAGTGAACCGAA
1 CCGAGTGAACCGAA
92486306 CCG
1 CCG
92486309 GTTAAGAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.32, G:0.26, T:0.10
Consensus pattern (14 bp):
CCGAGTGAACCGAA
Found at i:92488557 original size:14 final size:14
Alignment explanation
Indices: 92488534--92488567 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
92488524 GTCTGGAAAG
*
92488534 CATAACAAGAAATC
1 CATAATAAGAAATC
*
92488548 CATAATAAGAAATT
1 CATAATAAGAAATC
92488562 CATAAT
1 CATAAT
92488568 GCCCATACCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.56, C:0.15, G:0.06, T:0.24
Consensus pattern (14 bp):
CATAATAAGAAATC
Found at i:92492164 original size:19 final size:20
Alignment explanation
Indices: 92492088--92492161 Score: 64
Period size: 20 Copynumber: 3.9 Consensus size: 20
92492078 TCACTCTCAA
92492088 TCATATAAACAGTAATTCAT
1 TCATATAAACAGTAATTCAT
* *
92492108 TC-GAT-AACAGTAACTCAT
1 TCATATAAACAGTAATTCAT
* * * * *
92492126 CCTTATAAATAGTACTTTAT
1 TCATATAAACAGTAATTCAT
92492146 TCATAT-AACAGTAATT
1 TCATATAAACAGTAATT
92492162 TATCCGTGTA
Statistics
Matches: 40, Mismatches: 12, Indels: 5
0.70 0.21 0.09
Matches are distributed among these distances:
18 13 0.32
19 12 0.30
20 15 0.38
ACGTcount: A:0.41, C:0.16, G:0.07, T:0.36
Consensus pattern (20 bp):
TCATATAAACAGTAATTCAT
Found at i:92492394 original size:24 final size:24
Alignment explanation
Indices: 92492340--92492408 Score: 68
Period size: 24 Copynumber: 2.9 Consensus size: 24
92492330 GAGCTGATGG
**
92492340 ACAATAAGCTCTATTGAGCTG-AA
1 ACAATAAGCTCTAACGAGCTGAAA
** **
92492363 ACGGTAAGCTCTGGCGAGCTGAAA
1 ACAATAAGCTCTAACGAGCTGAAA
*
92492387 ACAATAAGCTCTTACGAGCTGA
1 ACAATAAGCTCTAACGAGCTGA
92492409 TATATTAGTA
Statistics
Matches: 36, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
23 16 0.44
24 20 0.56
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (24 bp):
ACAATAAGCTCTAACGAGCTGAAA
Found at i:92497107 original size:27 final size:26
Alignment explanation
Indices: 92497067--92497189 Score: 93
Period size: 27 Copynumber: 4.6 Consensus size: 26
92497057 CTCGATTTAC
** *
92497067 AAAATTACTGAAATATCCTTGGTTTT
1 AAAATTACCAAAATACCCTTGGTTTT
* * * **
92497093 CAAAATTACCAAAATGCCCTCGATCAGT
1 -AAAATTACCAAAATACCCTTGGT-TTT
*
92497121 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTT-T
* *
92497148 AAAATTACCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATACCCTTGGTTT-T
* *
92497175 GAAATTATCAAAATA
1 AAAATTACCAAAATA
92497190 ACTCGATTTG
Statistics
Matches: 77, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
27 76 0.99
28 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.30
Consensus pattern (26 bp):
AAAATTACCAAAATACCCTTGGTTTT
Found at i:92497180 original size:54 final size:54
Alignment explanation
Indices: 92497067--92497220 Score: 136
Period size: 54 Copynumber: 2.9 Consensus size: 54
92497057 CTCGATTTAC
** * * *
92497067 AAAATTACTGAAATATCCTTGGTTT-TCAAAATTACCAAAAT-GCCCTCGATCAGT
1 AAAATTACCAAAATAACCCTGGTTTGT-AAAATTACCAAAATACCCCT-GATCAGT
* **
92497121 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATAACCCTGGTTTGTAAAATTACCAAAATACCCCTGATCAGT
* * * * * *
92497175 GAAATTATCAAAATAACTC-GATTTGTAAAA-TATCGAAATACCCCTG
1 AAAATTACCAAAATAACCCTGGTTTGTAAAATTACCAAAATACCCCTG
92497221 TAGGGTAGAG
Statistics
Matches: 84, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
52 14 0.17
53 10 0.12
54 55 0.65
55 5 0.06
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (54 bp):
AAAATTACCAAAATAACCCTGGTTTGTAAAATTACCAAAATACCCCTGATCAGT
Found at i:92497205 original size:26 final size:27
Alignment explanation
Indices: 92497094--92497220 Score: 134
Period size: 27 Copynumber: 4.8 Consensus size: 27
92497084 CTTGGTTTTC
* **
92497094 AAAATTACCAAAAT-GCCCTCGATCAGT
1 AAAATTACCAAAATACCCCT-GATTTGT
*
92497121 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
92497148 AAAATTACCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* * * *
92497175 GAAATTATCAAAATAACTC-GATTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* *
92497201 AAAA-TATCGAAATACCCCTG
1 AAAATTACCAAAATACCCCTG
92497221 TAGGGTAGAG
Statistics
Matches: 85, Mismatches: 13, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
25 11 0.13
26 11 0.13
27 59 0.69
28 4 0.05
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.28
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGATTTGT
Found at i:92497351 original size:54 final size:54
Alignment explanation
Indices: 92497208--92497370 Score: 200
Period size: 54 Copynumber: 3.0 Consensus size: 54
92497198 TGTAAAATAT
* **
92497208 CGAAATACCCCTGTAGGGTAGAGTTACCGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTATTGAAATACCCCTGTAGGGTAGAATTAC
* * *
92497262 CGAAATACCCTTATAGGGTAGAATTATTGAAATACCCCTGTAGGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTATTGAAATACCCCTGTAGGGTAGAATTAC
* * * * * * * *
92497316 TGAAATACCCCTGTAAGGTAGAATTTTTGAGATACCCTTTTGGGGTAAAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTATTGAAATACCCCTGTAGGGTAGAATTAC
92497370 C
1 C
92497371 ATTTCGCCCT
Statistics
Matches: 91, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 91 1.00
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (54 bp):
CGAAATACCCCTGTAGGGTAGAATTATTGAAATACCCCTGTAGGGTAGAATTAC
Found at i:92497351 original size:81 final size:81
Alignment explanation
Indices: 92497199--92497368 Score: 225
Period size: 81 Copynumber: 2.1 Consensus size: 81
92497189 AACTCGATTT
* * *
92497199 GTAAAA-TATCGAAATACCCCTGTAGGGTAGAGTTACCGAAATACCCCTGTAGGGTAGAATTACC
1 GTAAAATTATTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAAGGTAGAATTACC
92497263 GAAATACCCTTATAGG
66 GAAATACCCTTATAGG
* ** ***
92497279 GTAGAATTATTGAAATACCCCTGTAGGGTAGAATTATTGAAATACCCCTGTAAGGTAGAATTTTT
1 GTAAAATTATTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAAGGTAGAATTACC
* * *
92497344 GAGATACCCTTTTGGG
66 GAAATACCCTTATAGG
92497360 GTAAAATTA
1 GTAAAATTA
92497369 CCATTTCGCC
Statistics
Matches: 76, Mismatches: 13, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
80 5 0.07
81 71 0.93
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (81 bp):
GTAAAATTATTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAAGGTAGAATTACC
GAAATACCCTTATAGG
Found at i:92497362 original size:27 final size:27
Alignment explanation
Indices: 92497209--92497352 Score: 198
Period size: 27 Copynumber: 5.3 Consensus size: 27
92497199 GTAAAATATC
* **
92497209 GAAATACCCCTGTAGGGTAGAGTTACC
1 GAAATACCCCTGTAGGGTAGAATTATT
**
92497236 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTATT
* *
92497263 GAAATACCCTTATAGGGTAGAATTATT
1 GAAATACCCCTGTAGGGTAGAATTATT
92497290 GAAATACCCCTGTAGGGTAGAATTATT
1 GAAATACCCCTGTAGGGTAGAATTATT
* *
92497317 GAAATACCCCTGTAAGGTAGAATTTTT
1 GAAATACCCCTGTAGGGTAGAATTATT
*
92497344 GAGATACCC
1 GAAATACCC
92497353 TTTTGGGGTA
Statistics
Matches: 107, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 107 1.00
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTATT
Found at i:92497648 original size:24 final size:25
Alignment explanation
Indices: 92497572--92497641 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
92497562 AGGAAGTGCT
* *
92497572 AAAAGGG-TTATGCCCCAGTTTACCG
1 AAAAGGGCTT-TGCCCCAGTTTATCA
92497597 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
92497622 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
92497642 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 40 0.95
26 2 0.05
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:92497654 original size:24 final size:24
Alignment explanation
Indices: 92497582--92497668 Score: 79
Period size: 25 Copynumber: 3.5 Consensus size: 24
92497572 AAAAGGGTTA
*
92497582 TGCCCCAGTTTACCGAAAAG-GGCTT
1 TGCCCCAG-TTATC-AAAAGAGGCTT
92497607 TGCCCCAGTTTATCAAAA-AGGGCTT
1 TGCCCCAG-TTATCAAAAGA-GGCTT
* *
92497632 TGCCCCAGTTATTAAAAGAGGCTA
1 TGCCCCAGTTATCAAAAGAGGCTT
*
92497656 GGCCTCCAGTTAT
1 TGCC-CCAGTTAT
92497669 ATGATAAAGT
Statistics
Matches: 54, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
24 19 0.35
25 35 0.65
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.26
Consensus pattern (24 bp):
TGCCCCAGTTATCAAAAGAGGCTT
Found at i:92498881 original size:15 final size:15
Alignment explanation
Indices: 92498863--92498900 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
92498853 CTTATTTTAC
92498863 TTATTTATA-TTAGTT
1 TTATTTA-ACTTAGTT
92498878 TTATTTAACTTAGTT
1 TTATTTAACTTAGTT
*
92498893 TAATTTAA
1 TTATTTAA
92498901 TTTCTAAAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 1 0.05
15 20 0.95
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.61
Consensus pattern (15 bp):
TTATTTAACTTAGTT
Found at i:92501467 original size:19 final size:19
Alignment explanation
Indices: 92501443--92501484 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
92501433 GTATTGGCAT
92501443 GATGATGATGCCTTTCATG
1 GATGATGATGCCTTTCATG
92501462 GATGATGATGCCTTTCATG
1 GATGATGATGCCTTTCATG
92501481 GATG
1 GATG
92501485 TGGTTTTTGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.21, C:0.14, G:0.29, T:0.36
Consensus pattern (19 bp):
GATGATGATGCCTTTCATG
Found at i:92505373 original size:29 final size:28
Alignment explanation
Indices: 92505341--92505417 Score: 91
Period size: 29 Copynumber: 2.6 Consensus size: 28
92505331 TATCATATTC
*
92505341 ATATGGCTCATTAGTCCCAAATCACCTGT
1 ATATGGC-CATTAGTCCCAAATCACATGT
* *
92505370 ATATGGCCTATTAGGCCCAAATCACATTT
1 ATATGGCC-ATTAGTCCCAAATCACATGT
*
92505399 ATATGGCCCGTTAGTCCCA
1 ATATGG-CCATTAGTCCCA
92505418 GTCACATTCA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
28 1 0.02
29 38 0.93
30 2 0.05
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (28 bp):
ATATGGCCATTAGTCCCAAATCACATGT
Found at i:92506735 original size:8 final size:8
Alignment explanation
Indices: 92506724--92506757 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
92506714 ATAAAAAAAA
92506724 TTGGGATT
1 TTGGGATT
92506732 TTGGGATT
1 TTGGGATT
*
92506740 TTTGGATT
1 TTGGGATT
*
92506748 TCGGGATT
1 TTGGGATT
92506756 TT
1 TT
92506758 TAGGGTGTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.12, C:0.03, G:0.32, T:0.53
Consensus pattern (8 bp):
TTGGGATT
Found at i:92512938 original size:29 final size:28
Alignment explanation
Indices: 92512897--92512980 Score: 98
Period size: 29 Copynumber: 3.0 Consensus size: 28
92512887 ACTAAGCCCT
* *
92512897 ATCATATTCATATGGCCCATTAGTCCCAA
1 ATCACATT-ATATGGCCCATTAGACCCAA
*
92512926 ATCACCTGTATATGGCCCATTAGACCCAA
1 ATCACAT-TATATGGCCCATTAGACCCAA
* *
92512955 ATCACATT-TATGGCCCGTTAGGCCCA
1 ATCACATTATATGGCCCATTAGACCCA
92512981 GTCACGTTCA
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
27 16 0.33
28 1 0.02
29 30 0.62
30 1 0.02
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.27
Consensus pattern (28 bp):
ATCACATTATATGGCCCATTAGACCCAA
Found at i:92512975 original size:27 final size:29
Alignment explanation
Indices: 92512906--92512980 Score: 100
Period size: 29 Copynumber: 2.7 Consensus size: 29
92512896 TATCATATTC
* *
92512906 ATATGGCCCATTAGTCCCAAATCACCTGT
1 ATATGGCCCATTAGACCCAAATCACATGT
92512935 ATATGGCCCATTAGACCCAAATCACAT-T
1 ATATGGCCCATTAGACCCAAATCACATGT
* *
92512963 -TATGGCCCGTTAGGCCCA
1 ATATGGCCCATTAGACCCA
92512981 GTCACGTTCA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
27 16 0.38
28 1 0.02
29 25 0.60
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (29 bp):
ATATGGCCCATTAGACCCAAATCACATGT
Found at i:92513223 original size:8 final size:8
Alignment explanation
Indices: 92513210--92513262 Score: 70
Period size: 8 Copynumber: 6.6 Consensus size: 8
92513200 AAACTTTCTA
92513210 CTTTTCGG
1 CTTTTCGG
* *
92513218 CATTTCGA
1 CTTTTCGG
92513226 CTTTTCGG
1 CTTTTCGG
92513234 CTTTTCGG
1 CTTTTCGG
92513242 CTTTTCGG
1 CTTTTCGG
* *
92513250 CATTTCAG
1 CTTTTCGG
92513258 CTTTT
1 CTTTT
92513263 GCCGATACAT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
8 38 1.00
ACGTcount: A:0.08, C:0.25, G:0.19, T:0.49
Consensus pattern (8 bp):
CTTTTCGG
Done.