Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 302 of 313
Found at i:92818736 original size:25 final size:25
Alignment explanation
Indices: 92818679--92818747 Score: 66
Period size: 25 Copynumber: 2.7 Consensus size: 25
92818669 AAATAATTCT
*
92818679 ATTTTAAAATATTAAAATTTAATAA
1 ATTTTTAAATATTAAAATTTAATAA
*** * *
92818704 AAAATTAAATATTAATATTTAATAC
1 ATTTTTAAATATTAAAATTTAATAA
*
92818729 ATTTTTAATATATTTAAAT
1 ATTTTTAA-ATATTAAAAT
92818748 CTCATAATTT
Statistics
Matches: 32, Mismatches: 11, Indels: 1
0.73 0.25 0.02
Matches are distributed among these distances:
25 24 0.75
26 8 0.25
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.46
Consensus pattern (25 bp):
ATTTTTAAATATTAAAATTTAATAA
Found at i:92821194 original size:91 final size:91
Alignment explanation
Indices: 92821080--92821383 Score: 608
Period size: 91 Copynumber: 3.3 Consensus size: 91
92821070 TACGTATGCT
92821080 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTTTTAGCCGATGCGTGTCCTAGACACGTC
1 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTTTTAGCCGATGCGTGTCCTAGACACGTC
92821145 TTACAATGGCTATCTCTGTCGAGGCC
66 TTACAATGGCTATCTCTGTCGAGGCC
92821171 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTTTTAGCCGATGCGTGTCCTAGACACGTC
1 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTTTTAGCCGATGCGTGTCCTAGACACGTC
92821236 TTACAATGGCTATCTCTGTCGAGGCC
66 TTACAATGGCTATCTCTGTCGAGGCC
92821262 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTTTTAGCCGATGCGTGTCCTAGACACGTC
1 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTTTTAGCCGATGCGTGTCCTAGACACGTC
92821327 TTACAATGGCTATCTCTGTCGAGGCC
66 TTACAATGGCTATCTCTGTCGAGGCC
92821353 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
92821384 CCTCGTCTGG
Statistics
Matches: 213, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
91 213 1.00
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (91 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACAACTTTTAGCCGATGCGTGTCCTAGACACGTC
TTACAATGGCTATCTCTGTCGAGGCC
Found at i:92821408 original size:47 final size:44
Alignment explanation
Indices: 92821035--92821474 Score: 276
Period size: 47 Copynumber: 9.5 Consensus size: 44
92821025 CTGCCAATGC
* * * *
92821035 CATGTCCCAGACATGATCTTACACTAGCTCTCATATACGTATGCTGATG
1 CATGTCCCAGACATG-TCTTACACTAGCTATC-TCT--GGA-GCCGATG
* * **
92821084 CATGTCCCAGACATGTCTTACACTAGCACAACT-TTTAGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGC-TATCTCTGGAGCCGATG
* * * * *
92821128 CGTGTCCTAGACACGTCTTACAATGGCTATCTCTGTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTATCTCTG--GA-GCCGATG
* * **
92821175 CATGTCCCAGACATGTCTTACACTAGCACAACT-TTTAGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGC-TATCTCTGGAGCCGATG
* * * * *
92821219 CGTGTCCTAGACACGTCTTACAATGGCTATCTCTGTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTATCTCTG--GA-GCCGATG
* * **
92821266 CATGTCCCAGACATGTCTTACACTAGCACAACT-TTTAGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGC-TATCTCTGGAGCCGATG
* * * * *
92821310 CGTGTCCTAGACACGTCTTACAATGGCTATCTCTGTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTATCTCTG--GA-GCCGATG
**
92821357 CATGTCCCAGACATGTCTTACACTAGCCCTCGTCTGGATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTATC-TCTGGA-GCCGATG
* * * * *
92821403 CCATGTCCCAAACATGGTCTTACACTGGCTCTCGTAATGTG-GCCGAAG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTATC-T-CTG-GAGCCGATG
* *
92821451 CATGTCCCAAACATTTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
92821475 GGCACACAAA
Statistics
Matches: 307, Mismatches: 64, Indels: 43
0.74 0.15 0.10
Matches are distributed among these distances:
43 9 0.03
44 89 0.29
45 4 0.01
46 21 0.07
47 119 0.39
48 46 0.15
49 18 0.06
50 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTAGCTATCTCTGGAGCCGATG
Found at i:92825622 original size:8 final size:8
Alignment explanation
Indices: 92825602--92825632 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
92825592 AAAATAGAAT
92825602 AAATAAT-
1 AAATAATA
92825609 AAATAATA
1 AAATAATA
92825617 AAATAATA
1 AAATAATA
92825625 AAATAATA
1 AAATAATA
92825633 GGATAGAGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 7 0.30
8 16 0.70
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (8 bp):
AAATAATA
Found at i:92831220 original size:174 final size:174
Alignment explanation
Indices: 92830909--92831222 Score: 425
Period size: 174 Copynumber: 1.8 Consensus size: 174
92830899 GGGTTACCAG
* * * *
92830909 AGTCCAACTATAGCCTTACACCTTATATTCCCCGTGTTTATTGTCCTGGTGGACTACTAGGATAC
1 AGTCCAACTATAGCCTTACACCGTATATTCCCCGTGTTTACTGTCCTGATAGACTACTAGGATAC
* * * * *
92830974 CATAACATCTTCCAACTATGGTTTTAGTCCTCTCTATCATGATTCCATGGCATCTTTTAGCCATG
66 CATAACATCTTCCAACTATGGTCTTAGTCCTCTCTACCATGACTCCATAGCATCTTTCAGCCATG
92831039 ATCTTACTCAATTTAGTTATAGTCCTGTCCACCTAGGTTGTCAT
131 ATCTTACTCAATTTAGTTATAGTCCTGTCCACCTAGGTTGTCAT
* * **
92831083 AGTCCAACTATAGTCTTACACCGTATATTTCTTGTGTTTACTGT-CTCGATAGACTACTAGGATA
1 AGTCCAACTATAGCCTTACACCGTATATTCCCCGTGTTTACTGTCCT-GATAGACTACTAGGATA
*** * * *
92831147 CCATAGTGTCTTTCAACTATGGTCTTAGTCCTGTCTACCATGACTCCATAGCTTCTTTCAGCCAT
65 CCATAACATCTTCCAACTATGGTCTTAGTCCTCTCTACCATGACTCCATAGCATCTTTCAGCCAT
92831212 -AGTCTTACTCA
130 GA-TCTTACTCA
92831223 TTTCAGTCAT
Statistics
Matches: 119, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
173 3 0.03
174 116 0.97
ACGTcount: A:0.23, C:0.25, G:0.14, T:0.37
Consensus pattern (174 bp):
AGTCCAACTATAGCCTTACACCGTATATTCCCCGTGTTTACTGTCCTGATAGACTACTAGGATAC
CATAACATCTTCCAACTATGGTCTTAGTCCTCTCTACCATGACTCCATAGCATCTTTCAGCCATG
ATCTTACTCAATTTAGTTATAGTCCTGTCCACCTAGGTTGTCAT
Found at i:92831265 original size:90 final size:91
Alignment explanation
Indices: 92831155--92831350 Score: 254
Period size: 90 Copynumber: 2.2 Consensus size: 91
92831145 TACCATAGTG
* * * * * * *
92831155 TCTTTCAACTATGGTCTTAGTCCTGTCTACCATGACT-CCAT-AGCTTCTTTCAGCCATAGTC-T
1 TCTTTCAGCTATGGTATTAGTCCTATCTACCAT-AATGCCATGAG-GTATTTCAGCCACAGTCTT
92831217 TACTCATTTCAGTCATGATGCCATAGCA
64 TACTCATTTCAGTCATGATGCCATAGCA
*
92831245 TCTTTTAGCTATGGTATTAGTCCTATCTACCATAATGCCATGAGGTATTTCAGCCACAGTCTTTA
1 TCTTTCAGCTATGGTATTAGTCCTATCTACCATAATGCCATGAGGTATTTCAGCCACAGTCTTTA
* * *
92831310 CTCATTTTAGTCATGATGTCATATCA
66 CTCATTTCAGTCATGATGCCATAGCA
92831336 TCTTTCAGCTATGGT
1 TCTTTCAGCTATGGT
92831351 CTTACTCATT
Statistics
Matches: 91, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
89 2 0.02
90 47 0.52
91 42 0.46
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.39
Consensus pattern (91 bp):
TCTTTCAGCTATGGTATTAGTCCTATCTACCATAATGCCATGAGGTATTTCAGCCACAGTCTTTA
CTCATTTCAGTCATGATGCCATAGCA
Found at i:92831363 original size:45 final size:44
Alignment explanation
Indices: 92831200--92831363 Score: 123
Period size: 45 Copynumber: 3.6 Consensus size: 44
92831190 CTCCATAGCT
*
92831200 TCTTTCAGCCATAGTCTTACTCATTTCAGTCATGATGCCATAGCA
1 TCTTTCAGCCATAGTCTTACTCATTTTAGTCATGATGCCATA-CA
* * * * * * * * * **
92831245 TCTTTTAGCTATGGTATTAGTCCTATCTA-CCATAATGCCATGAGG
1 TCTTTCAGCCATAGTCTTACTCAT-TTTAGTCATGATGCCAT-ACA
* * *
92831290 TATTTCAGCCACAGTCTTTACTCATTTTAGTCATGATGTCATATCA
1 TCTTTCAGCCATAGTC-TTACTCATTTTAGTCATGATGCCATA-CA
* *
92831336 TCTTTCAGCTATGGTCTTACTCATTTTA
1 TCTTTCAGCCATAGTCTTACTCATTTTA
92831364 TAGCTTATAG
Statistics
Matches: 84, Mismatches: 30, Indels: 10
0.68 0.24 0.08
Matches are distributed among these distances:
45 54 0.64
46 30 0.36
ACGTcount: A:0.24, C:0.23, G:0.13, T:0.40
Consensus pattern (44 bp):
TCTTTCAGCCATAGTCTTACTCATTTTAGTCATGATGCCATACA
Found at i:92835771 original size:21 final size:21
Alignment explanation
Indices: 92835747--92835790 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
92835737 CACTCCCATA
*
92835747 TGGAGTCCACACATGCCCGTG
1 TGGAGGCCACACATGCCCGTG
**
92835768 TGGAGGGGACACATGCCCGTG
1 TGGAGGCCACACATGCCCGTG
92835789 TG
1 TG
92835791 AGTAGCTCGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.18, C:0.27, G:0.36, T:0.18
Consensus pattern (21 bp):
TGGAGGCCACACATGCCCGTG
Found at i:92855888 original size:18 final size:18
Alignment explanation
Indices: 92855865--92855901 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
92855855 TTTAAAGGTG
92855865 TATGGTAAGTATATTTTC
1 TATGGTAAGTATATTTTC
92855883 TATGGTAAGTATATTTTC
1 TATGGTAAGTATATTTTC
92855901 T
1 T
92855902 GACTATGTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.05, G:0.16, T:0.51
Consensus pattern (18 bp):
TATGGTAAGTATATTTTC
Found at i:92860138 original size:70 final size:69
Alignment explanation
Indices: 92860023--92860322 Score: 307
Period size: 70 Copynumber: 4.3 Consensus size: 69
92860013 AGAAGTGTGG
* * * * *
92860023 GCTCATGCTAATTGTTTTGGAGGCTGTGGTATTGAACCTGCTAGCCTTAAAATTACAGTTGGGAG
1 GCTCGTGCTAACTATTTTGG-GGCTGCGATATTGAACCTGCTAGCCTTAAAATTACAGTTGGGAG
92860088 CTTGA
65 CTTGA
* * ** * * *
92860093 GCTCGTGCTAACTATTTTGGGCGATGCGATATTAAACCTATTAGCCTTAAACTTACAATTGGGAA
1 GCTCGTGCTAACTATTTTGGG-GCTGCGATATTGAACCTGCTAGCCTTAAAATTACAGTTGGGAG
*
92860158 CTTAA
65 CTTGA
* ** * * * *
92860163 GCTTGCACTAACTATTTCGGGGCTGCGATATTGAACTTGCTATCCTTAAAATTATAGTTGGGAGC
1 GCTCGTGCTAACTATTTTGGGGCTGCGATATTGAACCTGCTAGCCTTAAAATTACAGTTGGGAGC
92860228 TTGA
66 TTGA
* * * *
92860232 GCTCATGCTAACTAATTTGGGGGCTGCGCTATTGAA-CTGGCTAGCCTTAAAATTACAGTTGGAA
1 GCTCGTGCTAACT-ATTTTGGGGCTGCGATATTGAACCT-GCTAGCCTTAAAATTACAGTTGGGA
92860296 GCTTGA
64 GCTTGA
* *
92860302 GTTTAG-GCTAACTATTTTGGG
1 G-CTCGTGCTAACTATTTTGGG
92860323 AGGGAATATA
Statistics
Matches: 184, Mismatches: 42, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
69 55 0.30
70 128 0.70
71 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (69 bp):
GCTCGTGCTAACTATTTTGGGGCTGCGATATTGAACCTGCTAGCCTTAAAATTACAGTTGGGAGC
TTGA
Found at i:92871698 original size:46 final size:46
Alignment explanation
Indices: 92871553--92871721 Score: 177
Period size: 46 Copynumber: 3.7 Consensus size: 46
92871543 GTGTGAGCTT
* *
92871553 GTGTAAGACATGTCTGGGACATGCATCGGCCAC-A-TTATGAGAGCCA
1 GTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAT-A-AGCCA
* * * *
92871599 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGT--GCTA
1 GTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGA-TA-TAAGCCA
92871647 G-GTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAAGCCA
1 GTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAAGCCA
* *
92871692 GTGTAAGACGTATCTGGGACATGCATCGGC
1 GTGTAAGACATGTCTGGGACATGCATCGGC
92871722 TATGACATGT
Statistics
Matches: 102, Mismatches: 12, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
43 1 0.01
44 1 0.01
45 17 0.17
46 48 0.47
47 20 0.20
48 12 0.12
49 1 0.01
51 1 0.01
52 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.31, T:0.22
Consensus pattern (46 bp):
GTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAAGCCA
Found at i:92871764 original size:46 final size:44
Alignment explanation
Indices: 92871553--92871767 Score: 152
Period size: 46 Copynumber: 4.7 Consensus size: 44
92871543 GTGTGAGCTT
* * * * *
92871553 GTGTAAGACATGTCTGGGACATGCATCGGCCA-CATTATGAGAGCCA
1 GTGTAAGACATGTCTGGGACATGCATCGGCTATGA-CAT--GTGCTA
92871599 GTGTAAGACCATGTCTGGGACATGGCATCGGC-ATTGAGACGA-GTGCTA
1 GTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-T--GAC-ATGTGCTA
* ** *
92871647 G-GTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATATAAGCCA
1 GTGTAAGACATGTCTGGGACATGCATCGG-CT--ATGACATGTGCTA
* * *
92871692 GTGTAAGACGTATCTGGGACATGCATCGGCTATGACATGTGTTA
1 GTGTAAGACATGTCTGGGACATGCATCGGCTATGACATGTGCTA
*
92871736 GTGTAAGACCATGTCTGGGATATGGCATCGGC
1 GTGTAAGA-CATGTCTGGGACAT-GCATCGGC
92871768 ACCTTACCCC
Statistics
Matches: 135, Mismatches: 18, Indels: 32
0.73 0.10 0.17
Matches are distributed among these distances:
43 1 0.01
44 15 0.11
45 26 0.19
46 56 0.41
47 21 0.16
48 13 0.10
49 1 0.01
51 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.24
Consensus pattern (44 bp):
GTGTAAGACATGTCTGGGACATGCATCGGCTATGACATGTGCTA
Found at i:92871935 original size:13 final size:13
Alignment explanation
Indices: 92871917--92871942 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
92871907 TGTGAGCTCA
92871917 ATATATGCTATAT
1 ATATATGCTATAT
92871930 ATATATGCTATAT
1 ATATATGCTATAT
92871943 GTATTGAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (13 bp):
ATATATGCTATAT
Found at i:92872926 original size:20 final size:21
Alignment explanation
Indices: 92872888--92872926 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
92872878 TTAAAATGGT
92872888 CACACAAGCGTGTTGCCCTTC
1 CACACAAGCGTGTTGCCCTTC
*
92872909 CACACAGGCGTG-TGCCCT
1 CACACAAGCGTGTTGCCCT
92872927 GTTTCAAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.18, C:0.38, G:0.23, T:0.21
Consensus pattern (21 bp):
CACACAAGCGTGTTGCCCTTC
Found at i:92878116 original size:23 final size:24
Alignment explanation
Indices: 92878073--92878118 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
92878063 TTTGTGACAT
*
92878073 TGAAACAACGATTTTTGACACCAC
1 TGAAACAACGATTGTTGACACCAC
92878097 TGAAA-AACGAGTTGTT-ACACCA
1 TGAAACAACGA-TTGTTGACACCA
92878119 TGCCTCTTGC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.39, C:0.22, G:0.15, T:0.24
Consensus pattern (24 bp):
TGAAACAACGATTGTTGACACCAC
Found at i:92878556 original size:20 final size:21
Alignment explanation
Indices: 92878531--92878578 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
92878521 ATATTATCAT
*
92878531 TATTCATG-ATTTGACT-CCAC
1 TATTCATGTACTTGA-TGCCAC
92878551 TATTCATGTACTTGATGCCAC
1 TATTCATGTACTTGATGCCAC
92878572 TATTCAT
1 TATTCAT
92878579 AGGACTGACA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 9 0.36
21 16 0.64
ACGTcount: A:0.25, C:0.23, G:0.10, T:0.42
Consensus pattern (21 bp):
TATTCATGTACTTGATGCCAC
Found at i:92880525 original size:16 final size:16
Alignment explanation
Indices: 92880504--92880535 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
92880494 GTTTGCTCTT
92880504 TGATCTAATGTAAAGG
1 TGATCTAATGTAAAGG
92880520 TGATCTAATGTAAAGG
1 TGATCTAATGTAAAGG
92880536 AATTAATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.25, T:0.31
Consensus pattern (16 bp):
TGATCTAATGTAAAGG
Found at i:92883614 original size:4 final size:4
Alignment explanation
Indices: 92883605--92883662 Score: 63
Period size: 4 Copynumber: 15.5 Consensus size: 4
92883595 ATAGAAAGGT
*
92883605 AATA AATA AATA AATA AAT- AAT- AAT- AAT- AATA AAGGA AA-A AATA
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AA-TA AATA AATA
92883649 AATA AATA AATA AA
1 AATA AATA AATA AA
92883663 GATGCACAAT
Statistics
Matches: 50, Mismatches: 1, Indels: 6
0.88 0.02 0.11
Matches are distributed among these distances:
3 15 0.30
4 32 0.64
5 3 0.06
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.22
Consensus pattern (4 bp):
AATA
Found at i:92883674 original size:40 final size:38
Alignment explanation
Indices: 92883605--92883682 Score: 95
Period size: 40 Copynumber: 2.0 Consensus size: 38
92883595 ATAGAAAGGT
*
92883605 AATAAATAAATAAATAAATAATAATAATAATAAAGGAAAA
1 AATAAATAAATAAATAAATAATAACAATAA-AAA-GAAAA
* *
92883645 AATAAATAAATAAATAAA-GATGCACAATAAAAAGAAAA
1 AATAAATAAATAAATAAATAAT-AACAATAAAAAGAAAA
92883683 TACAAAAACA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
38 5 0.15
39 5 0.15
40 24 0.71
ACGTcount: A:0.72, C:0.03, G:0.06, T:0.19
Consensus pattern (38 bp):
AATAAATAAATAAATAAATAATAACAATAAAAAGAAAA
Found at i:92885302 original size:89 final size:88
Alignment explanation
Indices: 92885147--92885860 Score: 500
Period size: 89 Copynumber: 8.0 Consensus size: 88
92885137 GGAATTGCTG
* * * * * * * * *
92885147 CTTCAATCTGCCCCACTACAACTTCAGGGAGATAAGGTTTATAGCTGTAATCTACTCTACTCCAA
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTA-CTTTAATCTGCTCCACTGCAA
*
92885212 CTTCAGAGAGATAAGATTTGCTAT
65 CTTCAGGGAGATAAGATTTGCTAT
* * * * *
92885236 CTTCAATCTACTCCATTGTAACTTCAGGGAGATTAGACTTGTAGCTATAATCTGCTCCACTGCAA
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTA-CTTTAATCTGCTCCACTGCAA
* *
92885301 CTTCAGGGAGATGAA-ACTCG-TAT
65 CTTCAGGGAGAT-AAGATTTGCTAT
* * * * * * **
92885324 CTTCAATTTGCTCCACTGTAATTTTAGGGAGATAAGATTAGTCACTTTAGCCTGCTCCACTGCAA
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGT-ACTTTAATCTGCTCCACTGCAA
* * * *
92885389 CTCCAGGGAGATAAGGTTT-ATAG
65 CTTCAGGGAGATAAGATTTGCTAT
* * * * ** * * * * * *
92885412 CTTTAATCTGCTCTACTGCAATTTCAAAGAAACAAGATTTGTTATTTTCAATCTGCACCACCGTA
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTG-TACTTT-AATCTGCTCCACTGCA
*
92885477 ACTTCAGGGAGATAGGATTTGCTAT
64 ACTTCAGGGAGATAAGATTTGCTAT
** * * * * * ** * *
92885502 CTTCAATCTGTTCCACTGCAACTTTAGAGAGATAAGGTTTATAGCTTTAATTTAATCTACTACAA
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTA-CTTTAATCTGCTCCACTGCAA
*
92885567 CTTCAGAGAGATAAGATTTGCTAT
65 CTTCAGGGAGATAAGATTTGCTAT
* * * * * * *
92885591 CTTCAGTCTATTCCACTGCAACTTCAGGGAGATAAAACTTGTAATTTCAACCTGTTCCACTGCAA
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTACTTT-AATCTGCTCCACTGCAA
* * * *
92885656 CTTTAGGGAGATAAGGTTT-ATAG
65 CTTCAGGGAGATAAGATTTGCTAT
* * * * ** *
92885679 CTTTAATCTACTCTACTGCAACTTTAGAGAGATAAGATTAACTATCTTCAATCTGCTCCACTGCA
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATT-TGTA-CTTTAATCTGCTCCACTGCA
* * * *
92885744 ACTTCAAGAAGATAAGATTTGTGGTTTGTAG
64 ACTTCAGGGAGATAAGA-TT-T-G---CTAT
* * * * *
92885775 CTTTAATCTATTCCACTGCAACTTTAGGGAAATAAGATTTGCTATCTTCAATCTGCTCCACTGCA
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTG-TA-CTTTAATCTGCTCCACTGCA
*
92885840 ACTTCAAGGAGATAAGATTTG
64 ACTTCAGGGAGATAAGATTTG
92885861 TAACTTGTAG
Statistics
Matches: 486, Mismatches: 120, Indels: 34
0.76 0.19 0.05
Matches are distributed among these distances:
87 2 0.00
88 140 0.29
89 220 0.45
90 42 0.09
91 1 0.00
93 1 0.00
94 1 0.00
95 2 0.00
96 77 0.16
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (88 bp):
CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTACTTTAATCTGCTCCACTGCAAC
TTCAGGGAGATAAGATTTGCTAT
Found at i:92885694 original size:133 final size:134
Alignment explanation
Indices: 92885165--92885758 Score: 522
Period size: 133 Copynumber: 4.5 Consensus size: 134
92885155 TGCCCCACTA
* * * * * * * * *
92885165 CAACTTCAGGGAGATAAGGTTT-ATAGCTGT-AATCTACTCTACTCCAACTTCAGAGAGATAAGA
1 CAACTTCAGAGAGATAAGATTTGCTATCT-TCAATCTGCTCCACTGCAACTTCAGGGAGATAAAA
* * ** * * * * ** * * *
92885228 TTTGCTATCTTCAATCTACTCCATTGTAACTTCAGGGAGATTAGACTTGTAGCTATAATCTGCTC
65 CTTGCTATCTTCAACCTGTTCCACTGCAACTTTAGGGAGATAAGGTTTATAGCTTTAATCTACTC
*
92885293 CACTG
130 TACTG
* * * * * * * *
92885298 CAACTTCAGGGAGATGAA-ACTCG-TATCTTCAATTTGCTCCACTGTAATTTTAGGGAGATAAGA
1 CAACTTCAGAGAGAT-AAGATTTGCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAAA
* * * ** *
92885361 -TTAG-TCA-CTTTAGCCTGCTCCACTGCAACTCCAGGGAGATAAGGTTTATAGCTTTAATCTGC
65 CTT-GCT-ATCTTCAACCTGTTCCACTGCAACTTTAGGGAGATAAGGTTTATAGCTTTAATCTAC
92885423 TCTACTG
128 TCTACTG
* * * * * * * * * ** *
92885430 CAATTTCAAAGAAACAAGATTTGTTATTTTCAATCTGCACCACCGTAACTTCAGGGAGATAGGAT
1 CAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAAAC
* * * *
92885495 TTGCTATCTTCAATCTGTTCCACTGCAACTTTAGAGAGATAAGGTTTATAGCTTTAATTTAATCT
66 TTGCTATCTTCAACCTGTTCCACTGCAACTTTAGGGAGATAAGGTTTATAGCTTTAATCTACTCT
*
92885560 ACTA
131 ACTG
* **
92885564 CAACTTCAGAGAGATAAGATTTGCTATCTTCAGTCTATTCCACTGCAACTTCAGGGAGATAAAAC
1 CAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAAAC
92885629 TTG-TAAT-TTCAACCTGTTCCACTGCAACTTTAGGGAGATAAGGTTTATAGCTTTAATCTACTC
66 TTGCT-ATCTTCAACCTGTTCCACTGCAACTTTAGGGAGATAAGGTTTATAGCTTTAATCTACTC
92885692 TACTG
130 TACTG
* ** * *
92885697 CAACTTTAGAGAGATAAGATTAACTATCTTCAATCTGCTCCACTGCAACTTCAAGAAGATAA
1 CAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA
92885759 GATTTGTGGT
Statistics
Matches: 372, Mismatches: 78, Indels: 22
0.79 0.17 0.05
Matches are distributed among these distances:
131 2 0.01
132 66 0.18
133 193 0.52
134 111 0.30
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (134 bp):
CAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAAAC
TTGCTATCTTCAACCTGTTCCACTGCAACTTTAGGGAGATAAGGTTTATAGCTTTAATCTACTCT
ACTG
Found at i:92885795 original size:96 final size:96
Alignment explanation
Indices: 92885670--92885928 Score: 365
Period size: 96 Copynumber: 2.7 Consensus size: 96
92885660 AGGGAGATAA
* * * * *
92885670 GGTTTATAGCTTTAATCTACTCTACTGCAACTTTAGAGAGATAAGATTAACTATCTTCAATCTGC
1 GGTTTGTAGCTTTAATCTATTCCACTGCAACTTTAGGGAAATAAGATTAACTATCTTCAATCTGC
92885735 TCCACTGCAACTTCAAGAAGATAAGATTTGT
66 TCCACTGCAACTTCAAGAAGATAAGATTTGT
**
92885766 GGTTTGTAGCTTTAATCTATTCCACTGCAACTTTAGGGAAATAAGATTTGCTATCTTCAATCTGC
1 GGTTTGTAGCTTTAATCTATTCCACTGCAACTTTAGGGAAATAAGATTAACTATCTTCAATCTGC
*
92885831 TCCACTGCAACTTCAAGGAGATAAGATTTGT
66 TCCACTGCAACTTCAAGAAGATAAGATTTGT
*** * * * * * *
92885862 AACTTGTAGCTTTAATCTGTTCCACTGCAACCTCAGGGAAATGAGATTCATTATCTTCAATCTGC
1 GGTTTGTAGCTTTAATCTATTCCACTGCAACTTTAGGGAAATAAGATTAACTATCTTCAATCTGC
92885927 TC
66 TC
92885929 TATTGTAAGT
Statistics
Matches: 145, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
96 145 1.00
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (96 bp):
GGTTTGTAGCTTTAATCTATTCCACTGCAACTTTAGGGAAATAAGATTAACTATCTTCAATCTGC
TCCACTGCAACTTCAAGAAGATAAGATTTGT
Found at i:92885810 original size:51 final size:49
Alignment explanation
Indices: 92885728--92885909 Score: 167
Period size: 51 Copynumber: 3.7 Consensus size: 49
92885718 AACTATCTTC
* *
92885728 AATCTGCTCCACTGCAACTTCA-AGAAGATAAGATTTGTGGTTTGTAGCTTT
1 AATCTGTTCCACTGCAACTTCAGGGAA-ATAAGATTTGT-G-TTGTAGCTTT
* * * * *
92885779 AATCTATTCCACTGCAACTTTAGGGAAATAAGA-TT-TG--CTATCTTC
1 AATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGTGTTGTAGCTTT
* * * *
92885824 AATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGTAACTTGTAGCTTT
1 AATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGT--GTTGTAGCTTT
* *
92885875 AATCTGTTCCACTGCAACCTCAGGGAAATGAGATT
1 AATCTGTTCCACTGCAACTTCAGGGAAATAAGATT
92885910 CATTATCTTC
Statistics
Matches: 103, Mismatches: 21, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
45 33 0.32
46 2 0.02
47 1 0.01
48 1 0.01
49 1 0.01
50 2 0.02
51 60 0.58
52 3 0.03
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.33
Consensus pattern (49 bp):
AATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGTGTTGTAGCTTT
Found at i:92885953 original size:96 final size:96
Alignment explanation
Indices: 92885676--92886001 Score: 326
Period size: 96 Copynumber: 3.5 Consensus size: 96
92885666 ATAAGGTTTA
* * * * * * *
92885676 TAGCTTTAATCTACTCTACTGCAACTTTAGAGAGATAAGATTAACTATCTTCAATCTGCTCCACT
1 TAGCTTTAATCTATTCCACTGCAACCTCAGGGAAATAAGATTCACTATCTTCAATCTGCTCCACT
* * ***
92885741 GCAACTTCAAGAAGATAAGATTTGTGGTTTG
66 GCAACTTCAAGGAGAAAAGATTTGTAACTTG
* * **
92885772 TAGCTTTAATCTATTCCACTGCAACTTTAGGGAAATAAGATTTGCTATCTTCAATCTGCTCCACT
1 TAGCTTTAATCTATTCCACTGCAACCTCAGGGAAATAAGATTCACTATCTTCAATCTGCTCCACT
*
92885837 GCAACTTCAAGGAGATAAGATTTGTAACTTG
66 GCAACTTCAAGGAGAAAAGATTTGTAACTTG
* * * * *
92885868 TAGCTTTAATCTGTTCCACTGCAACCTCAGGGAAATGAGATTCATTATCTTCAATCTGCTCTATT
1 TAGCTTTAATCTATTCCACTGCAACCTCAGGGAAATAAGATTCACTATCTTCAATCTGCTCCACT
* * *
92885933 GTAAGTT-TAGAGAGAAAAGATTTG-----TG
66 GCAACTTCAAG-GAGAAAAGATTTGTAACTTG
* * * *
92885959 -A-CTTTAATCTTTTCCACTACAACTTCAGGGAGATAAGATTCAC
1 TAGCTTTAATCTATTCCACTGCAACCTCAGGGAAATAAGATTCAC
92886002 CATGATAACT
Statistics
Matches: 200, Mismatches: 29, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
89 36 0.18
90 1 0.00
91 2 0.01
95 2 0.01
96 159 0.80
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (96 bp):
TAGCTTTAATCTATTCCACTGCAACCTCAGGGAAATAAGATTCACTATCTTCAATCTGCTCCACT
GCAACTTCAAGGAGAAAAGATTTGTAACTTG
Found at i:92885997 original size:44 final size:44
Alignment explanation
Indices: 92885146--92886280 Score: 566
Period size: 44 Copynumber: 24.9 Consensus size: 44
92885136 AGGAATTGCT
* * * * *
92885146 GCTTCAATCTGCCCCACTACAACTTCAGGGAGATAAGGTTTATA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
* * * * *
92885190 GCTGTAATCTACTCTACTCCAACTTCAGAGAGATAAGATTTGCTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TA
* * * * * * *
92885235 TCTTCAATCTACTCCATTGTAACTTCAGGGAGATTAGACTTGTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
* * *
92885279 GCTATAATCTGCTCCACTGCAACTTCAGGGAGATGAA-ACTCGTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGAT-AAGATTTGTA
* * * * * * *
92885323 TCTTCAATTTGCTCCACTGTAATTTTAGGGAGATAAGATTAGTCA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-A
** * * *
92885368 -CTTTAGCCTGCTCCACTGCAACTCCAGGGAGATAAGGTTTATA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
* * ** * *
92885411 GCTTTAATCTGCTCTACTGCAATTTCAAAGAAACAAGATTTGTTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TA
* * * * *
92885456 -TTTTCAATCTGCACCACCGTAACTTCAGGGAGATAGGATTTGCTA
1 GCTTT-AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TA
* * * * * * *
92885501 TCTTCAATCTGTTCCACTGCAACTTTAGAGAGATAAGGTTTATA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
* ** * * *
92885545 GCTTTAATTTAATCTACTACAACTTCAGAGAGATAAGATTTGCTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TA
* * * ** * *
92885590 TCTTCAGTCTATTCCACTGCAACTTCAGGGAGATAAAACTTGTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
* * * * * *
92885634 -ATTTCAACCTGTTCCACTGCAACTTTAGGGAGATAAGGTTTATA
1 GCTTT-AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
* * * * **
92885678 GCTTTAATCTACTCTACTGCAACTTTAGAGAGATAAGATTAACTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-TGTA
* * * *
92885723 TCTTCAATCTGCTCCACTGCAACTTCAAGAAGATAAGATTTGTGGTTTGTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-------TTTGTA
** * *
92885774 GCTTTAATCTATTCCACTGCAACTTTAGGGAAATAAGATTTGCTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TA
* * *
92885819 TCTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGTAACTTGTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA----T---TTGTA
* * * *
92885870 GCTTTAATCTGTTCCACTGCAACCTCAGGGAAATGAGATTCAT-TA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT--TGTA
* * * * * * * * *
92885915 TCTTCAATCTGCTCTATTGTAAGTTTAGAGAGAAAAGATTTGT-
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
** *
92885958 GACTTTAATCTTTTCCACTACAACTTCAGGGAGATAAGATTCACCATGATA
1 G-CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-----TG-TA
* ** * * * * *
92886009 ACTTCGATCCG-TCCCACTGTAACTTTAGGG-GTATAGGATTTGTG
1 GCTTTAATCTGCT-CCACTGCAACTTCAGGGAG-ATAAGATTTGTA
* *
92886053 GCTTTAATCTGCTCCACTGTAACTTCAGGGAAATAAGATTCGCCATGATA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-----TG-TA
* ** * * *
92886103 ACTTCGATCTG-TCTCACTGTAACTTCAGGG-GTATAGGATTTGTG
1 GCTTTAATCTGCTC-CACTGCAACTTCAGGGAG-ATAAGATTTGTA
92886147 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGATA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-T---T-TG-TA
* ** * * * *
92886197 ACTTCGATCTG-TCCCACTACAACTTCAGGG-GTATATGATTTATG
1 GCTTTAATCTGCT-CCACTGCAACTTCAGGGAG-ATAAGATTTGTA
* * * *
92886241 GCTTTAATATGCTCCATTGCAACTTTAAGGAGATAAGATT
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
92886281 CACCATGGTA
Statistics
Matches: 806, Mismatches: 223, Indels: 124
0.70 0.19 0.11
Matches are distributed among these distances:
43 6 0.01
44 382 0.47
45 238 0.30
46 4 0.00
47 1 0.00
48 1 0.00
49 14 0.02
50 90 0.11
51 65 0.08
52 5 0.01
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (44 bp):
GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
Found at i:92886058 original size:94 final size:94
Alignment explanation
Indices: 92885951--92886340 Score: 564
Period size: 94 Copynumber: 4.1 Consensus size: 94
92885941 AGAGAGAAAA
* ** *
92885951 GATTTGTGACTTTAATCTTTTCCACTACAACTTCAGGGAGATAAGATTCACCATGATAACTTCGA
1 GATTTGTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCACCATGATAACTTCGA
*
92886016 TCCGTCCCACTGTAACTTTAGGGGTATAG
66 TCCGTCCCACTGTAACTTCAGGGGTATAG
* * *
92886045 GATTTGTGGCTTTAATCTGCTCCACTGTAACTTCAGGGAAATAAGATTCGCCATGATAACTTCGA
1 GATTTGTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCACCATGATAACTTCGA
* *
92886110 TCTGTCTCACTGTAACTTCAGGGGTATAG
66 TCCGTCCCACTGTAACTTCAGGGGTATAG
* *
92886139 GATTTGTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGATAACTTCGA
1 GATTTGTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCACCATGATAACTTCGA
* ** *
92886204 TCTGTCCCACTACAACTTCAGGGGTATAT
66 TCCGTCCCACTGTAACTTCAGGGGTATAG
* * * * * *
92886233 GATTTATGGCTTTAATATGCTCCATTGCAACTTTAAGGAGATAAGATTCACCATGGTAACTTCGA
1 GATTTGTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCACCATGATAACTTCGA
* *
92886298 TTCGTCCCACTGTAACTTCAGAGGTATAG
66 TCCGTCCCACTGTAACTTCAGGGGTATAG
92886327 GATTTGTGGCTTTA
1 GATTTGTGGCTTTA
92886341 CTGATCTGTT
Statistics
Matches: 264, Mismatches: 32, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
94 264 1.00
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.33
Consensus pattern (94 bp):
GATTTGTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCACCATGATAACTTCGA
TCCGTCCCACTGTAACTTCAGGGGTATAG
Found at i:92895117 original size:31 final size:28
Alignment explanation
Indices: 92895050--92895118 Score: 75
Period size: 28 Copynumber: 2.4 Consensus size: 28
92895040 ATGCATGAAA
* * *
92895050 ACCAAATTGAACATGAAATAATTCAGGT
1 ACCAAATTGAACATGAAACAACTCAAGT
*
92895078 CCCAAATTGAACATGAAAACCAACCTCAAGT
1 ACCAAATTGAACATG-AAA-CAA-CTCAAGT
92895109 ACCAAATTGA
1 ACCAAATTGA
92895119 GATAAAAATC
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
28 14 0.42
29 3 0.09
30 2 0.06
31 14 0.42
ACGTcount: A:0.46, C:0.22, G:0.12, T:0.20
Consensus pattern (28 bp):
ACCAAATTGAACATGAAACAACTCAAGT
Found at i:92897217 original size:74 final size:73
Alignment explanation
Indices: 92897099--92897366 Score: 308
Period size: 74 Copynumber: 3.6 Consensus size: 73
92897089 GTTTTCCCCG
* * * *
92897099 AAATCCCTACGTTCTTTTCCCAAATCCCTTTCTTTCTTCCCCAATTTCTTTTCCCCAAATCAATT
1 AAATCCCTAAGCT-TTTTCCCAAATCCCTTCCTTT-TTTCCCAATTTCTTTTCCCCAAATCAATT
92897164 CCCCTCCCTA
64 CCCCTCCCTA
*
92897174 AAATCCCTAAG-TTTTTCCTCTAATCCCTTCCCTTTTTTCCCAATTTCTTTTCCCCAAATCAATT
1 AAATCCCTAAGCTTTTTCC-CAAATCCCTT-CCTTTTTTCCCAATTTCTTTTCCCCAAATCAATT
* *
92897238 ACCCTCCCCA
64 CCCCTCCCTA
* * * * * *
92897248 TAATCCCTAAGCTTTTTGCCAAATCCCTTTCTTTTTTCCCAACTTCTTTTCCCCAAATCAGTTCT
1 AAATCCCTAAGCTTTTTCCCAAATCCCTTCCTTTTTTCCCAATTTCTTTTCCCCAAATCAATTCC
* *
92897313 CCT-CTTCG
66 CCTCCCT-A
*
92897321 AAATCCCTAA-CTTTTTCCCCAAATCCCCTCCTTTTTTCCCCAATTT
1 AAATCCCTAAGCTTTTT-CCCAAATCCCTTCCTTTTTT-CCCAATTT
92897367 TTGTTGCATT
Statistics
Matches: 165, Mismatches: 22, Indels: 13
0.82 0.11 0.06
Matches are distributed among these distances:
72 7 0.04
73 66 0.40
74 72 0.44
75 20 0.12
ACGTcount: A:0.20, C:0.38, G:0.02, T:0.40
Consensus pattern (73 bp):
AAATCCCTAAGCTTTTTCCCAAATCCCTTCCTTTTTTCCCAATTTCTTTTCCCCAAATCAATTCC
CCTCCCTA
Found at i:92900476 original size:29 final size:29
Alignment explanation
Indices: 92900441--92900499 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
92900431 ACTTGTATTT
92900441 TGCATTATCAATCAAGTGATAGATAAGTA
1 TGCATTATCAATCAAGTGATAGATAAGTA
92900470 TGCATTATCAATCAAGTGATAGATAAGTA
1 TGCATTATCAATCAAGTGATAGATAAGTA
92900499 T
1 T
92900500 TAAGAGGGCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.41, C:0.10, G:0.17, T:0.32
Consensus pattern (29 bp):
TGCATTATCAATCAAGTGATAGATAAGTA
Found at i:92901284 original size:32 final size:33
Alignment explanation
Indices: 92901228--92901290 Score: 101
Period size: 32 Copynumber: 1.9 Consensus size: 33
92901218 AATTGATTTT
92901228 TATATTTTTAATAACTTTTAAATTTAAAAAAAA
1 TATATTTTTAATAACTTTTAAATTTAAAAAAAA
* *
92901261 TATATTTTTAA-AATTTTTAAATTTTAAAAA
1 TATATTTTTAATAACTTTTAAATTTAAAAAA
92901291 TTAAATCATT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (33 bp):
TATATTTTTAATAACTTTTAAATTTAAAAAAAA
Found at i:92903793 original size:50 final size:50
Alignment explanation
Indices: 92903718--92903894 Score: 257
Period size: 50 Copynumber: 3.5 Consensus size: 50
92903708 CCATGGAAAC
92903718 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * * *
92903768 AAGTGATAAGTAATAACTTCGGCTACACTTATCTGATTAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
92903818 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGG-CAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAA-GGACAAATGA
* * * *
92903868 CAACTGAAAAGTGGTAGCTTCAGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
92903895 CTGATCAGTG
Statistics
Matches: 113, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
50 89 0.79
51 24 0.21
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:92904080 original size:31 final size:31
Alignment explanation
Indices: 92903872--92904073 Score: 314
Period size: 31 Copynumber: 6.5 Consensus size: 31
92903862 AAATGACAAC
92903872 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
92903903 TGAAAAGTGGTAGTTTCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* *
92903934 TGAAAAGTGGTAGCTTCTGCTACCTAATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
92903965 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* *
92903996 TGAAAAGTGGTAGCTCCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* **
92904027 TGAAAAATGGTAGCACCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
92904058 TGAATAGTGGTAGCTT
1 TGAAAAGTGGTAGCTT
92904074 TGGCTACAAG
Statistics
Matches: 157, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 157 1.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (31 bp):
TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
Found at i:92904091 original size:7 final size:7
Alignment explanation
Indices: 92904079--92904107 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
92904069 AGCTTTGGCT
92904079 ACAAGTG
1 ACAAGTG
92904086 ACAAGTG
1 ACAAGTG
92904093 ACAAGTG
1 ACAAGTG
92904100 ACAAGTG
1 ACAAGTG
92904107 A
1 A
92904108 TTTCTGTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.45, C:0.14, G:0.28, T:0.14
Consensus pattern (7 bp):
ACAAGTG
Found at i:92904180 original size:47 final size:48
Alignment explanation
Indices: 92904111--92904236 Score: 157
Period size: 47 Copynumber: 2.7 Consensus size: 48
92904101 CAAGTGATTT
* *
92904111 CTGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATG-CTA
1 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
* * * *
92904158 CTGTATAAGACCATATTTGGGATATGACATCAGTGAGATATGTGATTA
1 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
* * *
92904206 C-GTGTAAGACCATAGCTGGGCTATGGCATCA
1 CTGTATAAGACCATATCTGGGATATGGCATCA
92904237 TTATGTAAAG
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
47 64 0.96
48 3 0.04
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.30
Consensus pattern (48 bp):
CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
Found at i:92909908 original size:40 final size:40
Alignment explanation
Indices: 92909871--92910095 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
92909861 GCTACTCGTT
* *
92909871 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
92909911 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
92909951 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
92909991 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
92910030 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
92910071 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
92910096 CATCATTCAA
Statistics
Matches: 167, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
38 2 0.01
39 33 0.20
40 119 0.71
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:92910055 original size:119 final size:120
Alignment explanation
Indices: 92909871--92910095 Score: 305
Period size: 119 Copynumber: 1.9 Consensus size: 120
92909861 GCTACTCGTT
*
92909871 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
92909936 ATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * **
92909991 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* * *
92910053 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
92910096 CATCATTCAA
Statistics
Matches: 92, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
118 4 0.04
119 66 0.72
120 22 0.24
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:92913402 original size:48 final size:48
Alignment explanation
Indices: 92913331--92913426 Score: 165
Period size: 48 Copynumber: 2.0 Consensus size: 48
92913321 CGAACCATGC
*
92913331 ATGTTGTTACAGAAGATCATGCTGCTATTTTGTTACTTTCAAATGGAT
1 ATGTTGCTACAGAAGATCATGCTGCTATTTTGTTACTTTCAAATGGAT
* *
92913379 ATGTTGCTGCAGAAGATCATGCTGCTGTTTTGTTACTTTCAAATGGAT
1 ATGTTGCTACAGAAGATCATGCTGCTATTTTGTTACTTTCAAATGGAT
92913427 GTTTTGTTAC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.25, C:0.14, G:0.21, T:0.41
Consensus pattern (48 bp):
ATGTTGCTACAGAAGATCATGCTGCTATTTTGTTACTTTCAAATGGAT
Found at i:92916891 original size:3 final size:3
Alignment explanation
Indices: 92916885--92916910 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
92916875 AATAATAATA
92916885 ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG AT
92916911 AATAGTATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.31, T:0.35
Consensus pattern (3 bp):
ATG
Found at i:92917163 original size:21 final size:20
Alignment explanation
Indices: 92917139--92917179 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
92917129 TAAAATTTCA
*
92917139 GAATTATAAAAGGATATAAAT
1 GAATAATAAAAGGATA-AAAT
*
92917160 GAATAATAAAATGATAAAAT
1 GAATAATAAAAGGATAAAAT
92917180 CGCATAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.61, C:0.00, G:0.12, T:0.27
Consensus pattern (20 bp):
GAATAATAAAAGGATAAAAT
Found at i:92917205 original size:11 final size:11
Alignment explanation
Indices: 92917189--92917213 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
92917179 TCGCATAAAA
92917189 TAAATATTAGG
1 TAAATATTAGG
92917200 TAAATATTAGG
1 TAAATATTAGG
92917211 TAA
1 TAA
92917214 TTAAACACGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.16, T:0.36
Consensus pattern (11 bp):
TAAATATTAGG
Found at i:92919235 original size:23 final size:23
Alignment explanation
Indices: 92919182--92919227 Score: 69
Period size: 21 Copynumber: 2.1 Consensus size: 23
92919172 ATTTGGACTG
*
92919182 TTTTAATTTAGATCTTATTTGGT
1 TTTTATTTTAGATCTTATTTGGT
92919205 TTTTATTTTA-ATC-TATTTGGT
1 TTTTATTTTAGATCTTATTTGGT
92919226 TT
1 TT
92919228 ATTTATTTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 10 0.45
22 3 0.14
23 9 0.41
ACGTcount: A:0.20, C:0.04, G:0.11, T:0.65
Consensus pattern (23 bp):
TTTTATTTTAGATCTTATTTGGT
Found at i:92919236 original size:13 final size:13
Alignment explanation
Indices: 92919218--92919248 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
92919208 TATTTTAATC
*
92919218 TATTTGGTTTATT
1 TATTTGGCTTATT
92919231 TATTTGGCTTATT
1 TATTTGGCTTATT
92919244 TATTT
1 TATTT
92919249 ATTGTAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.16, C:0.03, G:0.13, T:0.68
Consensus pattern (13 bp):
TATTTGGCTTATT
Found at i:92920879 original size:42 final size:42
Alignment explanation
Indices: 92920827--92920910 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
92920817 TTGTAAGTTA
92920827 GAACACGATCTTTTTTTAACTCTCGAGAATATTTAAAATTTT
1 GAACACGATCTTTTTTTAACTCTCGAGAATATTTAAAATTTT
*
92920869 GAACACGATCTTTTTTTAACTCTTGAGAATATTTAAAATTTT
1 GAACACGATCTTTTTTTAACTCTCGAGAATATTTAAAATTTT
92920911 TACTTTAAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.33, C:0.13, G:0.10, T:0.44
Consensus pattern (42 bp):
GAACACGATCTTTTTTTAACTCTCGAGAATATTTAAAATTTT
Found at i:92921178 original size:27 final size:27
Alignment explanation
Indices: 92921147--92921199 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
92921137 ATATAAGATA
92921147 AAAAATAAACAAGCCAAAAA-TAAAAAAG
1 AAAAAT-AACAAG-CAAAAACTAAAAAAG
*
92921175 AAAAATAACAAGTAAAAACTAAAAA
1 AAAAATAACAAGCAAAAACTAAAAA
92921200 TTTGAAACTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 5 0.22
27 12 0.52
28 6 0.26
ACGTcount: A:0.75, C:0.09, G:0.06, T:0.09
Consensus pattern (27 bp):
AAAAATAACAAGCAAAAACTAAAAAAG
Found at i:92921191 original size:13 final size:13
Alignment explanation
Indices: 92921147--92921197 Score: 50
Period size: 15 Copynumber: 3.7 Consensus size: 13
92921137 ATATAAGATA
92921147 AAAAATAAACAAG
1 AAAAATAAACAAG
*
92921160 CCAAAAATAAAAAAG
1 --AAAAATAAACAAG
92921175 AAAAAT-AACAAG
1 AAAAATAAACAAG
92921187 TAAAAACTAAA
1 -AAAAA-TAAA
92921198 AATTTGAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
12 5 0.16
13 11 0.35
14 1 0.03
15 14 0.45
ACGTcount: A:0.75, C:0.10, G:0.06, T:0.10
Consensus pattern (13 bp):
AAAAATAAACAAG
Found at i:92922447 original size:21 final size:21
Alignment explanation
Indices: 92922405--92922447 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
92922395 TTTCATAATT
*
92922405 ATAAAAGGATATAAATGAATA
1 ATAAAAGGATATAAATCAATA
92922426 ATAAAAGGATA-AAATCACATA
1 ATAAAAGGATATAAATCA-ATA
92922447 A
1 A
92922448 AATAAATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.63, C:0.05, G:0.12, T:0.21
Consensus pattern (21 bp):
ATAAAAGGATATAAATCAATA
Found at i:92922466 original size:11 final size:11
Alignment explanation
Indices: 92922450--92922474 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
92922440 TCACATAAAA
92922450 TAAATATTAGG
1 TAAATATTAGG
92922461 TAAATATTAGG
1 TAAATATTAGG
92922472 TAA
1 TAA
92922475 CTAAATGCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.16, T:0.36
Consensus pattern (11 bp):
TAAATATTAGG
Found at i:92934590 original size:26 final size:26
Alignment explanation
Indices: 92934554--92934606 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
92934544 GCAAGCTTCG
92934554 ATAGCCACTATAAAACACAAAAAAGT
1 ATAGCCACTATAAAACACAAAAAAGT
*
92934580 ATAGCCACTATAAAACACAGAAAAGT
1 ATAGCCACTATAAAACACAAAAAAGT
92934606 A
1 A
92934607 AATAGAGTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.57, C:0.19, G:0.09, T:0.15
Consensus pattern (26 bp):
ATAGCCACTATAAAACACAAAAAAGT
Found at i:92941494 original size:26 final size:26
Alignment explanation
Indices: 92941458--92941510 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
92941448 GCAAGCTTCG
92941458 ATAGCCACTATAAAACACAAAAAAGT
1 ATAGCCACTATAAAACACAAAAAAGT
*
92941484 ATAGCCACTATAAAACACAGAAAAGT
1 ATAGCCACTATAAAACACAAAAAAGT
92941510 A
1 A
92941511 AATAGAGTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.57, C:0.19, G:0.09, T:0.15
Consensus pattern (26 bp):
ATAGCCACTATAAAACACAAAAAAGT
Found at i:92947814 original size:44 final size:46
Alignment explanation
Indices: 92947671--92947918 Score: 180
Period size: 48 Copynumber: 5.3 Consensus size: 46
92947661 TTCCAAACCT
* * *
92947671 GGTCTTACATTGGCTCACATATCTAAG-TCGATGCCATGTCCCAGACA
1 GGTCTTACACT-GATCACATATC-AAGACCGATGCCATGTCCCAGACA
* * *
92947718 GGTCTTACACTGACTTTCATATATCATGACTGATGCCATGTCCCAGACA
1 GGTCTTACACTGA---TCACATATCAAGACCGATGCCATGTCCCAGACA
* *
92947767 GGTCTTACACTGA-CACATGTCAAG-CCGATGCCATGTCCCAGATA
1 GGTCTTACACTGATCACATATCAAGACCGATGCCATGTCCCAGACA
* * * * * *
92947811 GGTCTTACACTAGCTTGCATATCTCGAGGCTGATG-CATGTCCCAGACA
1 GGTCTTACACT-G-AT-CACATATCAAGACCGATGCCATGTCCCAGACA
* * * * * * **
92947859 TGTCTTACACTAGCTCTCATCTTAATATTGATGCCATGTCCCAGACA
1 GGTCTTACACT-GATCACATATCAAGACCGATGCCATGTCCCAGACA
92947906 CGGTCTTACACTG
1 -GGTCTTACACTG
92947919 GCTCTCATAA
Statistics
Matches: 163, Mismatches: 27, Indels: 22
0.77 0.13 0.10
Matches are distributed among these distances:
44 29 0.18
45 9 0.06
46 12 0.07
47 25 0.15
48 44 0.27
49 44 0.27
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.29
Consensus pattern (46 bp):
GGTCTTACACTGATCACATATCAAGACCGATGCCATGTCCCAGACA
Found at i:92947864 original size:48 final size:47
Alignment explanation
Indices: 92947700--92947966 Score: 217
Period size: 48 Copynumber: 5.7 Consensus size: 47
92947690 TATCTAAGTC
*
92947700 GATGCCATGTCCCAGACAGGTCTTACACT-GACTTTCATATATCATGACT
1 GATGCCATGTCCCAGACAGGTCTTACACTAG-C-TTCATATATCA-GGCT
* * * * *
92947749 GATGCCATGTCCCAGACAGGTCTTACACT-G--ACACATGTCAAGCC
1 GATGCCATGTCCCAGACAGGTCTTACACTAGCTTCATATATCAGGCT
* *
92947793 GATGCCATGTCCCAGATAGGTCTTACACTAGCTTGCATATCTCGAGGCT
1 GATGCCATGTCCCAGACAGGTCTTACACTAGCTT-CATATATC-AGGCT
* * * ***
92947842 GATG-CATGTCCCAGACATGTCTTACACTAGCTCTCATCT-TAATATT
1 GATGCCATGTCCCAGACAGGTCTTACACTAGCT-TCATATATCAGGCT
* ** *
92947888 GATGCCATGTCCCAGACACGGTCTTACACTGGCTCTCATA-ATGTGGCC
1 GATGCCATGTCCCAGACA-GGTCTTACACTAGCT-TCATATATCAGGCT
* * *
92947936 GATG-CACGTCCCAGACATGTATTACACTAGC
1 GATGCCATGTCCCAGACAGGTCTTACACTAGC
92947967 ACACATCCAT
Statistics
Matches: 177, Mismatches: 32, Indels: 21
0.77 0.14 0.09
Matches are distributed among these distances:
44 29 0.16
45 8 0.05
46 17 0.10
47 26 0.15
48 59 0.33
49 38 0.21
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.27
Consensus pattern (47 bp):
GATGCCATGTCCCAGACAGGTCTTACACTAGCTTCATATATCAGGCT
Found at i:92948658 original size:20 final size:20
Alignment explanation
Indices: 92948633--92948671 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
92948623 AAAATTTCAA
92948633 TTATTTCAC-ACATTTACAAC
1 TTATTTCACAAC-TTTACAAC
*
92948653 TTATTTTACAACTTTACAA
1 TTATTTCACAACTTTACAA
92948672 AATAGCCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATTTCACAACTTTACAAC
Found at i:92952551 original size:18 final size:18
Alignment explanation
Indices: 92952515--92952559 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
92952505 CAATTGGGTG
92952515 TGTGGG-CCACACAAGCA
1 TGTGGGCCCACACAAGCA
* *
92952532 TGTGGGCCCAGACGAGCA
1 TGTGGGCCCACACAAGCA
*
92952550 TGTTGGCCCA
1 TGTGGGCCCA
92952560 TTATGCTATG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
17 6 0.25
18 18 0.75
ACGTcount: A:0.22, C:0.29, G:0.33, T:0.16
Consensus pattern (18 bp):
TGTGGGCCCACACAAGCA
Found at i:92954602 original size:12 final size:12
Alignment explanation
Indices: 92954585--92954610 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
92954575 TCATGAGCAT
92954585 TTTTATTTATCC
1 TTTTATTTATCC
92954597 TTTTATTTATCC
1 TTTTATTTATCC
92954609 TT
1 TT
92954611 CATTAACCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.69
Consensus pattern (12 bp):
TTTTATTTATCC
Found at i:92962404 original size:222 final size:222
Alignment explanation
Indices: 92962008--92962438 Score: 781
Period size: 222 Copynumber: 1.9 Consensus size: 222
92961998 TAAAGACATG
* * *
92962008 TTAAATCCCTACAAATTTAATTTTATTCTCTTATTTAAGATTAAGCTGCAATCATTAAGTTTAAT
1 TTAAATCCCTAAAAATTTAATTTTATTCCCTTATTTAAGATTAAGCCGCAATCATTAAGTTTAAT
92962073 TTATGCCTTCATATGTTGAACATTGCAATTCCTCTCAACTAGTGTAGGTAGCACAAAAACTTGAA
66 TTATGCCTTCATATGTTGAACATTGCAATTCCTCTCAACTAGTGTAGGTAGCACAAAAACTTGAA
* * *
92962138 TCAATAGGTCTTTTAAATAGGTTGTAGCATGGCTAGGCTAGGGGTAGGTAAAAGATAGATAAATT
131 CCAATAGGTCTTTTAAATAGGTTGTAGCATGGCCAAGCTAGGGGTAGGTAAAAGATAGATAAATT
92962203 TAGGCTAAAAACCCAATTTTATTTTAT
196 TAGGCTAAAAACCCAATTTTATTTTAT
92962230 TTAAATCCCTAAAAATTTAATTTTATTCCCTTATTTAAGATTAAGCCGCAATCATTAAGTTTAAT
1 TTAAATCCCTAAAAATTTAATTTTATTCCCTTATTTAAGATTAAGCCGCAATCATTAAGTTTAAT
* *
92962295 TTATGCCTTCATATGTTGAACATTGCAATTTCTCTCCACTAGTGTAGGTAGCACAAAAACTTGAA
66 TTATGCCTTCATATGTTGAACATTGCAATTCCTCTCAACTAGTGTAGGTAGCACAAAAACTTGAA
*
92962360 CCAATAGGTCTTTTAAATAGGTTGTAGCATGGCCAAGTTAGGGGTAGGTAAAAGATAGATAAATT
131 CCAATAGGTCTTTTAAATAGGTTGTAGCATGGCCAAGCTAGGGGTAGGTAAAAGATAGATAAATT
92962425 TAGGCTAAAAACCC
196 TAGGCTAAAAACCC
92962439 TAGACTCAGC
Statistics
Matches: 200, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
222 200 1.00
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.35
Consensus pattern (222 bp):
TTAAATCCCTAAAAATTTAATTTTATTCCCTTATTTAAGATTAAGCCGCAATCATTAAGTTTAAT
TTATGCCTTCATATGTTGAACATTGCAATTCCTCTCAACTAGTGTAGGTAGCACAAAAACTTGAA
CCAATAGGTCTTTTAAATAGGTTGTAGCATGGCCAAGCTAGGGGTAGGTAAAAGATAGATAAATT
TAGGCTAAAAACCCAATTTTATTTTAT
Found at i:92964935 original size:30 final size:30
Alignment explanation
Indices: 92964900--92964957 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
92964890 TAGACACTTC
92964900 CACACGGGT-GATCCACACGCCCGTGTGTGA
1 CACACGGGTAGAT-CACACGCCCGTGTGTGA
* *
92964930 CACACGGGTAGATCACATGCCTGTGTGT
1 CACACGGGTAGATCACACGCCCGTGTGT
92964958 CATGGCCGCG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 22 0.88
31 3 0.12
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (30 bp):
CACACGGGTAGATCACACGCCCGTGTGTGA
Found at i:92966331 original size:34 final size:34
Alignment explanation
Indices: 92966288--92966356 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
92966278 AGAAGAAGGG
*
92966288 TACGAGGACGATATTCACACCACAACCGAGGAGA
1 TACGAGGACGATATTCACACCACAACCAAGGAGA
92966322 TACGAGGACGATATTCACACCACAACCAAGGAGA
1 TACGAGGACGATATTCACACCACAACCAAGGAGA
92966356 T
1 T
92966357 GGCTGAAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.39, C:0.26, G:0.22, T:0.13
Consensus pattern (34 bp):
TACGAGGACGATATTCACACCACAACCAAGGAGA
Found at i:92967903 original size:37 final size:37
Alignment explanation
Indices: 92967845--92967915 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 37
92967835 GCTCAGACGA
* *
92967845 AATCTTCACACGAAGTTATCGGGTCTTACCCGGACAT
1 AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAT
*
92967882 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGAAGTCATCGGGTCTTACCCGGA
92967916 ATATATTTCC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAT
Found at i:92968109 original size:46 final size:46
Alignment explanation
Indices: 92968057--92968421 Score: 181
Period size: 47 Copynumber: 7.8 Consensus size: 46
92968047 TATATATACG
* * *
92968057 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATC
* * *
92968103 CATCTCATACACGTTTCGCATTAGCCATTCGGCCTTACCACATAT-
1 CATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATC
* * *
92968148 -AT-TCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATG
1 CATCTCA--TACACA-TC-TCACATTAGCCATTCGGCCTTA-C-CACATATC
* * *
92968198 CATGCTC--ACA-TTCATCACATTGGCCATTCGGCCTTATCACACATATG
1 CAT-CTCATACACATC-TCACATTAGCCATTCGGCCTTA-C-CACATATC
* * *
92968245 CATGCTC--ACA-TTCATCACATTGGCCATTCGGCCTTATCACACATATG
1 CAT-CTCATACACATC-TCACATTAGCCATTCGGCCTTA-C-CACATATC
* * *
92968292 CATGCTC--ACA-TTCATCACATTGGCCATTCGGCCTTATCACACATATG
1 CAT-CTCATACACATC-TCACATTAGCCATTCGGCCTTA-C-CACATATC
* * *
92968339 CATGCTC--ACA-TTCATCACATTGGCCATTCGGCCTTATCACACATATG
1 CAT-CTCATACACATC-TCACATTAGCCATTCGGCCTTA-C-CACATATC
* *
92968386 CATGCTC--ACA-TTCATCACATTGGCCATTCGGCCTTA
1 CAT-CTCATACACATC-TCACATTAGCCATTCGGCCTTA
92968422 TCTCATATAT
Statistics
Matches: 296, Mismatches: 13, Indels: 19
0.90 0.04 0.06
Matches are distributed among these distances:
43 3 0.01
44 2 0.01
45 4 0.01
46 40 0.14
47 233 0.79
48 1 0.00
49 9 0.03
51 2 0.01
53 2 0.01
ACGTcount: A:0.25, C:0.32, G:0.12, T:0.31
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATC
Found at i:92968183 original size:47 final size:47
Alignment explanation
Indices: 92968121--92968452 Score: 565
Period size: 47 Copynumber: 7.1 Consensus size: 47
92968111 ACACGTTTCG
* * * * *
92968121 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCA
92968168 CATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCA
92968215 CATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCA
92968262 CATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCA
92968309 CATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCA
92968356 CATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCA
* * * ***
92968403 CATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCA
92968450 CAT
1 CAT
92968453 AAAATCCTAA
Statistics
Matches: 274, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 274 1.00
ACGTcount: A:0.26, C:0.31, G:0.11, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCA
Found at i:92973533 original size:40 final size:40
Alignment explanation
Indices: 92973486--92973748 Score: 364
Period size: 40 Copynumber: 6.6 Consensus size: 40
92973476 CGAATACACG
* * * *
92973486 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * ** * *
92973526 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
92973566 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
92973606 TCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
92973646 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
92973686 TCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
92973726 TCACTAGCATGAATGCTCTTCGG
1 TCACTAGCATGAATGCTCTTCGG
92973749 NNNNNNNNNN
Statistics
Matches: 201, Mismatches: 22, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 201 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:92975779 original size:39 final size:40
Alignment explanation
Indices: 92975646--92975887 Score: 314
Period size: 40 Copynumber: 6.1 Consensus size: 40
92975636 CGGAATTTAA
** *
92975646 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
92975686 CCGGTTATAGTAACTCGTACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
92975726 CCGGATATAATAACTCGCACAATTGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
92975765 CCGGA-ATTAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
92975805 CCGGTTATAGTAACTCGCACAAATGCCTTTGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
92975844 CCGGA-ATTAGTCACTAGCACAAATGCCTTTGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
92975884 CCGG
1 CCGG
92975888 TTATCATCCG
Statistics
Matches: 182, Mismatches: 14, Indels: 12
0.88 0.07 0.06
Matches are distributed among these distances:
38 2 0.01
39 70 0.38
40 109 0.60
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:92975780 original size:79 final size:79
Alignment explanation
Indices: 92975665--92975887 Score: 331
Period size: 79 Copynumber: 2.8 Consensus size: 79
92975655 GCTACTCGTT
* * *
92975665 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGTACAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
92975729 GATATAATAACTCGCA
64 GATATAATAACTCGCA
* *
92975745 CAATTGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGT
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
92975810 TATAGTAACTCGCA
66 TATAATAACTCGCA
* * * *
92975824 CAAATGCCTTTGGGCTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTTGGGACTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
92975888 TTATCATCCG
Statistics
Matches: 131, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
79 117 0.89
80 14 0.11
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
TATAATAACTCGCA
Found at i:92980135 original size:28 final size:28
Alignment explanation
Indices: 92980093--92980152 Score: 86
Period size: 28 Copynumber: 2.1 Consensus size: 28
92980083 ACCTAAACCG
*
92980093 ACCAATTCATCCATACCCTTTCGATT-AT
1 ACCAATTCATCCATACCATTTCG-TTCAT
*
92980121 ACCAATTCATTCATACCATTTCGTTCAT
1 ACCAATTCATCCATACCATTTCGTTCAT
92980149 ACCA
1 ACCA
92980153 CTCTTACCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 2 0.07
28 27 0.93
ACGTcount: A:0.30, C:0.32, G:0.03, T:0.35
Consensus pattern (28 bp):
ACCAATTCATCCATACCATTTCGTTCAT
Found at i:92980136 original size:14 final size:14
Alignment explanation
Indices: 92980093--92980152 Score: 59
Period size: 14 Copynumber: 4.3 Consensus size: 14
92980083 ACCTAAACCG
*
92980093 ACCAATTCATCCAT
1 ACCAATTCATTCAT
**
92980107 ACCCTTTCGATT-AT
1 ACCAATTC-ATTCAT
92980121 ACCAATTCATTCAT
1 ACCAATTCATTCAT
* *
92980135 ACCATTTCGTTCAT
1 ACCAATTCATTCAT
92980149 ACCA
1 ACCA
92980153 CTCTTACCAT
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
13 3 0.08
14 32 0.86
15 2 0.05
ACGTcount: A:0.30, C:0.32, G:0.03, T:0.35
Consensus pattern (14 bp):
ACCAATTCATTCAT
Found at i:92980543 original size:11 final size:11
Alignment explanation
Indices: 92980514--92980543 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
92980504 AAAAGTATAT
92980514 AAAAAAAATTC
1 AAAAAAAATTC
*
92980525 GAAAAAAATTC
1 AAAAAAAATTC
92980536 AAAAAAAA
1 AAAAAAAA
92980544 GGGTGTTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.77, C:0.07, G:0.03, T:0.13
Consensus pattern (11 bp):
AAAAAAAATTC
Found at i:92981111 original size:84 final size:84
Alignment explanation
Indices: 92980970--92981139 Score: 322
Period size: 84 Copynumber: 2.0 Consensus size: 84
92980960 AATCACAACA
92980970 TAGAATATCGTCCGGCAAGACAACCCATTCGCAACGTCCCCAACTTAAACATGCAAGCCTTATTA
1 TAGAATATCGTCCGGCAAGACAACCCATTCGCAACGTCCCCAACTTAAACATGCAAGCCTTATTA
92981035 CCATAAATCGAGCGACTCC
66 CCATAAATCGAGCGACTCC
92981054 TAGAATATCGTCCGGCAAGACAACCCATTCGCAACGTCCCCAACTTAAACATGCAAGCCTTATTA
1 TAGAATATCGTCCGGCAAGACAACCCATTCGCAACGTCCCCAACTTAAACATGCAAGCCTTATTA
* *
92981119 CGATAAATGGAGCGACTCC
66 CCATAAATCGAGCGACTCC
92981138 TA
1 TA
92981140 AATTGAAGGC
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
84 84 1.00
ACGTcount: A:0.34, C:0.31, G:0.15, T:0.21
Consensus pattern (84 bp):
TAGAATATCGTCCGGCAAGACAACCCATTCGCAACGTCCCCAACTTAAACATGCAAGCCTTATTA
CCATAAATCGAGCGACTCC
Found at i:92987193 original size:28 final size:28
Alignment explanation
Indices: 92987153--92987212 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
92987143 ACCTAAACCG
*
92987153 ACCAATTCATTCATACCCCTTCGATCAT
1 ACCAATTCATTCATACCACTTCGATCAT
* *
92987181 ACCAATTCATTCATACCATTTCGTTCAT
1 ACCAATTCATTCATACCACTTCGATCAT
92987209 ACCA
1 ACCA
92987213 CTCTTACCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.30, C:0.33, G:0.03, T:0.33
Consensus pattern (28 bp):
ACCAATTCATTCATACCACTTCGATCAT
Found at i:92987194 original size:14 final size:14
Alignment explanation
Indices: 92987153--92987212 Score: 68
Period size: 14 Copynumber: 4.3 Consensus size: 14
92987143 ACCTAAACCG
92987153 ACCAATTCATTCAT
1 ACCAATTCATTCAT
**
92987167 ACCCCTTCGA-TCAT
1 ACCAATTC-ATTCAT
92987181 ACCAATTCATTCAT
1 ACCAATTCATTCAT
* *
92987195 ACCATTTCGTTCAT
1 ACCAATTCATTCAT
92987209 ACCA
1 ACCA
92987213 CTCTTACCAT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
13 1 0.03
14 36 0.95
15 1 0.03
ACGTcount: A:0.30, C:0.33, G:0.03, T:0.33
Consensus pattern (14 bp):
ACCAATTCATTCAT
Found at i:92990456 original size:93 final size:93
Alignment explanation
Indices: 92990344--92990515 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
92990334 GCCCATAAGT
* *
92990344 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
92990409 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
92990437 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
92990502 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
92990516 CAAATATCCT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:92990511 original size:46 final size:46
Alignment explanation
Indices: 92990336--92990511 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
92990326 TGTAACCCGC
* *
92990336 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
92990382 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
92990428 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
92990475 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
92990512 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:92990968 original size:30 final size:30
Alignment explanation
Indices: 92990934--92990993 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
92990924 ATTTAATACG
92990934 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
92990964 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
92990994 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:92992273 original size:39 final size:39
Alignment explanation
Indices: 92992219--92992306 Score: 140
Period size: 39 Copynumber: 2.3 Consensus size: 39
92992209 AAGACACTGA
* *
92992219 AAATGTATCCAGGCTAAAATCTCGCATGCTTCGTGCTGG
1 AAATGTATCCAGGCTAAAATCCCGCAGGCTTCGTGCTGG
* *
92992258 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCAGGCTAAAATCCCGCAGGCTTCGTGCTGG
92992297 AAATGTATCC
1 AAATGTATCC
92992307 NNNNNNNNNN
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (39 bp):
AAATGTATCCAGGCTAAAATCCCGCAGGCTTCGTGCTGG
Found at i:92993045 original size:30 final size:30
Alignment explanation
Indices: 92993001--92993089 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
92992991 CAAAGATAAC
*
92993001 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
92993030 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
92993060 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
92993090 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:92993049 original size:15 final size:14
Alignment explanation
Indices: 92993001--92993083 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
92992991 CAAAGATAAC
*
92993001 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
92993015 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
92993030 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
92993045 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
92993060 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
92993075 AAGAAACCC
1 AAGAAACCC
92993084 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:92993089 original size:15 final size:15
Alignment explanation
Indices: 92993012--92993089 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
92993002 AGAAAACCGA
92993012 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
92993027 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
92993041 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
92993056 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
92993072 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
92993087 ATA
1 ATA
92993090 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:93013368 original size:27 final size:27
Alignment explanation
Indices: 93013331--93013392 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
93013321 GAAAAAATTA
* *
93013331 TTATAAATTAATTA-AAATTAAATATT
1 TTATAATTTAAGTACAAATTAAATATT
* *
93013357 TTAATAATTTAAGTACAATTTAATTATT
1 TT-ATAATTTAAGTACAAATTAAATATT
93013385 TTATAATT
1 TTATAATT
93013393 ATATTATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
26 2 0.07
27 16 0.53
28 12 0.40
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (27 bp):
TTATAATTTAAGTACAAATTAAATATT
Found at i:93014390 original size:21 final size:18
Alignment explanation
Indices: 93014347--93014401 Score: 67
Period size: 18 Copynumber: 3.0 Consensus size: 18
93014337 ATCTACTAGA
93014347 TAATAATATTAAATATTT
1 TAATAATATTAAATATTT
*
93014365 TAATAATATTAAATCTTAT
1 TAATAATATTAAATATT-T
*
93014384 TAA-AATAATAAAATATTT
1 TAATAAT-ATTAAATATTT
93014402 ATCTACTAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
18 20 0.62
19 12 0.38
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (18 bp):
TAATAATATTAAATATTT
Found at i:93014502 original size:37 final size:36
Alignment explanation
Indices: 93014433--93014524 Score: 96
Period size: 37 Copynumber: 2.4 Consensus size: 36
93014423 TTAAATTTAA
*
93014433 TATTAAAATAATCACTTGAATATTAAATTAATA-AAATAC
1 TATTAAAATAAT-A-TTAAAT-TTAAATTAATATAAA-AC
* * *
93014472 TATTAAGATAAGTATTAAATTTAATTTAATATTAAAC
1 TATTAAAATAA-TATTAAATTTAAATTAATATAAAAC
93014509 TATTAAAATAATATTA
1 TATTAAAATAATATTA
93014525 TTGTTGGAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
36 5 0.11
37 22 0.48
38 7 0.15
39 11 0.24
40 1 0.02
ACGTcount: A:0.52, C:0.04, G:0.03, T:0.40
Consensus pattern (36 bp):
TATTAAAATAATATTAAATTTAAATTAATATAAAAC
Found at i:93016784 original size:34 final size:34
Alignment explanation
Indices: 93016746--93016814 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
93016736 TAGTTTACAA
93016746 GTTCATGCCTAAGCATTTAAATTTCTAACAGTGT
1 GTTCATGCCTAAGCATTTAAATTTCTAACAGTGT
93016780 GTTCATGCCTAAGCATTTAAATTTCTAACAGTGT
1 GTTCATGCCTAAGCATTTAAATTTCTAACAGTGT
93016814 G
1 G
93016815 CTCACCAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38
Consensus pattern (34 bp):
GTTCATGCCTAAGCATTTAAATTTCTAACAGTGT
Found at i:93025087 original size:11 final size:11
Alignment explanation
Indices: 93025071--93025114 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
93025061 TTATATGGCA
93025071 AATAGCATGGT
1 AATAGCATGGT
*
93025082 AATAGCATTAGT
1 AATAGCA-TGGT
93025094 -ATGAGCATGGT
1 AAT-AGCATGGT
93025105 AATAGCATGG
1 AATAGCATGG
93025115 GGCGTTCCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
11 19 0.68
12 9 0.32
ACGTcount: A:0.36, C:0.09, G:0.27, T:0.27
Consensus pattern (11 bp):
AATAGCATGGT
Found at i:93025209 original size:20 final size:20
Alignment explanation
Indices: 93025184--93025223 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
93025174 AATAATTAGT
93025184 AGAAAAATGA-AAATAATATG
1 AGAAAAATGAGAAA-AATATG
93025204 AGAAAAATGAGAAAAATATG
1 AGAAAAATGAGAAAAATATG
93025224 TATCAAAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 16 0.84
21 3 0.16
ACGTcount: A:0.65, C:0.00, G:0.17, T:0.17
Consensus pattern (20 bp):
AGAAAAATGAGAAAAATATG
Found at i:93025446 original size:19 final size:19
Alignment explanation
Indices: 93025422--93025459 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
93025412 GAAGGGGTAG
*
93025422 GAGAAAGAGAAGAGGAAGA
1 GAGAAAGAAAAGAGGAAGA
93025441 GAGAAAGAAAAGAGGAAGA
1 GAGAAAGAAAAGAGGAAGA
93025460 AAAGGTAGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.61, C:0.00, G:0.39, T:0.00
Consensus pattern (19 bp):
GAGAAAGAAAAGAGGAAGA
Found at i:93026211 original size:14 final size:14
Alignment explanation
Indices: 93026192--93026220 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
93026182 AGAGTCTAAG
93026192 CTTGACTTACCTCT
1 CTTGACTTACCTCT
93026206 CTTGACTTACCTCT
1 CTTGACTTACCTCT
93026220 C
1 C
93026221 CATTGAATGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.38, G:0.07, T:0.41
Consensus pattern (14 bp):
CTTGACTTACCTCT
Found at i:93026598 original size:20 final size:20
Alignment explanation
Indices: 93026573--93026615 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
93026563 AAAGAAGGTT
*
93026573 GTACCACATTATCAGTATTA
1 GTACCACATGATCAGTATTA
93026593 GTACCACATGATCAGTATTA
1 GTACCACATGATCAGTATTA
93026613 GTA
1 GTA
93026616 GTATGATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.33
Consensus pattern (20 bp):
GTACCACATGATCAGTATTA
Found at i:93032095 original size:29 final size:29
Alignment explanation
Indices: 93032041--93032103 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 29
93032031 ATACTTTTAT
* ** *
93032041 AAAATGTCTAATGTGGTATTTTTACTCTG
1 AAAATGTCCAATGTGGTACATGTACTCTG
*
93032070 AAAATGTCCAATGTGGTACATGTACTTTG
1 AAAATGTCCAATGTGGTACATGTACTCTG
93032099 AAAAT
1 AAAAT
93032104 CCTTATTGTA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.38
Consensus pattern (29 bp):
AAAATGTCCAATGTGGTACATGTACTCTG
Found at i:93032282 original size:17 final size:16
Alignment explanation
Indices: 93032259--93032306 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
93032249 ACATTTTGTA
93032259 AAAAAAAAACTAAATT
1 AAAAAAAAACTAAATT
**
93032275 AAACAAAAAGTTAAATT
1 AAA-AAAAAACTAAATT
93032292 AAAATAAAAAC-AAAT
1 AAAA-AAAAACTAAAT
93032307 AACTAAACAT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
16 8 0.31
17 18 0.69
ACGTcount: A:0.73, C:0.06, G:0.02, T:0.19
Consensus pattern (16 bp):
AAAAAAAAACTAAATT
Found at i:93033099 original size:63 final size:62
Alignment explanation
Indices: 93033012--93033131 Score: 204
Period size: 63 Copynumber: 1.9 Consensus size: 62
93033002 ACAGTATTAG
*
93033012 CACAACCCAAAATCTAGGCCAATAAATTGTCAATAACTCAAATATGGACACAGGCTTATCAA
1 CACAACCCAAAATCTAGGCCAATAAATTGTCAATAACTCAAATATGGACACAAGCTTATCAA
* *
93033074 CACAACCCAAAAATCTAGGCTAATAAATTGTCATTAACTCAAATATGGACACAAGCTT
1 CACAACCC-AAAATCTAGGCCAATAAATTGTCAATAACTCAAATATGGACACAAGCTT
93033132 TTTCGTCACA
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
62 8 0.15
63 46 0.85
ACGTcount: A:0.43, C:0.23, G:0.11, T:0.23
Consensus pattern (62 bp):
CACAACCCAAAATCTAGGCCAATAAATTGTCAATAACTCAAATATGGACACAAGCTTATCAA
Found at i:93035842 original size:20 final size:22
Alignment explanation
Indices: 93035810--93035875 Score: 68
Period size: 20 Copynumber: 3.2 Consensus size: 22
93035800 AAATATTTCA
**
93035810 ATAAATAAAAAATAAAAATA-T
1 ATAAATATTAAATAAAAATAGT
*
93035831 A-AAATATTAAATTAAAATAGT
1 ATAAATATTAAATAAAAATAGT
*
93035852 ATAAATATT-TA-AAAAATAGT
1 ATAAATATTAAATAAAAATAGT
93035872 ATAA
1 ATAA
93035876 TTGGTTTGTG
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
20 27 0.71
21 4 0.11
22 7 0.18
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (22 bp):
ATAAATATTAAATAAAAATAGT
Found at i:93040448 original size:23 final size:23
Alignment explanation
Indices: 93040421--93040468 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
93040411 AGTACTAAAC
93040421 CTATTGGTCTAAATGACTCAAAA
1 CTATTGGTCTAAATGACTCAAAA
93040444 CTATTGGTCTAAATGACTCAAAA
1 CTATTGGTCTAAATGACTCAAAA
93040467 CT
1 CT
93040469 TAATACATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (23 bp):
CTATTGGTCTAAATGACTCAAAA
Found at i:93041706 original size:54 final size:54
Alignment explanation
Indices: 93041624--93041740 Score: 173
Period size: 54 Copynumber: 2.2 Consensus size: 54
93041614 AAATATGGGT
* *
93041624 TGGTAATCCCGCCATTACTCAGTGAGCTTATGTTATAAGGGATTTAGCCTAGAC
1 TGGTAATCCCGACATTACTCAGTGAGCTTATGTTATAAGGGATTTAGACTAGAC
**
93041678 TGGTAATCCCGACATTACTCTA-TGAGCTTATGTTATGGGGGATTTAGACTAGAC
1 TGGTAATCCCGACATTACTC-AGTGAGCTTATGTTATAAGGGATTTAGACTAGAC
*
93041732 TAGTAATCC
1 TGGTAATCC
93041741 TGCCGTAAGA
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 56 0.98
55 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.32
Consensus pattern (54 bp):
TGGTAATCCCGACATTACTCAGTGAGCTTATGTTATAAGGGATTTAGACTAGAC
Found at i:93043033 original size:20 final size:20
Alignment explanation
Indices: 93043008--93043045 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
93042998 GACAGGGGCA
93043008 TGTCCCAAAGCACACGGGTG
1 TGTCCCAAAGCACACGGGTG
93043028 TGTCCCAAAGCACACGGG
1 TGTCCCAAAGCACACGGG
93043046 CTTGTACATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.26, C:0.32, G:0.29, T:0.13
Consensus pattern (20 bp):
TGTCCCAAAGCACACGGGTG
Found at i:93044415 original size:15 final size:15
Alignment explanation
Indices: 93044383--93044411 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
93044373 ATTTTTTGTG
93044383 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
93044398 TTTATTA-GTGTGAA
1 TTTATTATGTGTGAA
93044412 ATTTTCGTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:93050292 original size:31 final size:31
Alignment explanation
Indices: 93050249--93050312 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
93050239 CCTTTTCATA
93050249 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
93050280 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
93050311 TT
1 TT
93050313 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:93050348 original size:20 final size:20
Alignment explanation
Indices: 93050325--93050407 Score: 139
Period size: 20 Copynumber: 4.2 Consensus size: 20
93050315 TGTAAACGCG
*
93050325 TGTGCATATCATACATATCG
1 TGTGCATATCATACATATCA
*
93050345 TGTGCATATCAAACATATCA
1 TGTGCATATCATACATATCA
*
93050365 TGTGCATATCATACATTTCA
1 TGTGCATATCATACATATCA
93050385 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
93050405 TGT
1 TGT
93050408 TTATCAAAAT
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 58 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:93052942 original size:57 final size:57
Alignment explanation
Indices: 93052805--93052961 Score: 192
Period size: 57 Copynumber: 2.8 Consensus size: 57
93052795 ATCATATAAC
* * ** *
93052805 AGGATTACCAGTTCAGGCTAAATCCTATCTCCAACATATGCTCACAAGAGCTTAATT
1 AGGATTACCAGTCCAGGCTAAATCCTTTCTGTAACATATGCTCACAAGAGCTCAATT
* * *
93052862 AGGATTACCAGCCCAAGCTAAATCCTTTCTGTAACATATGCTCAGAAGAGCTCAATT
1 AGGATTACCAGTCCAGGCTAAATCCTTTCTGTAACATATGCTCACAAGAGCTCAATT
**
93052919 AGGATTACCAGTCCAGGAAAAAT-CTTAAT-TGTAACATATGCTC
1 AGGATTACCAGTCCAGGCTAAATCCTT--TCTGTAACATATGCTC
93052962 GAGAGGGATT
Statistics
Matches: 86, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
56 3 0.03
57 82 0.95
58 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.27
Consensus pattern (57 bp):
AGGATTACCAGTCCAGGCTAAATCCTTTCTGTAACATATGCTCACAAGAGCTCAATT
Found at i:93053010 original size:58 final size:57
Alignment explanation
Indices: 93052805--93053010 Score: 182
Period size: 57 Copynumber: 3.6 Consensus size: 57
93052795 ATCATATAAC
* * ** * * *
93052805 AGGATTACCAGTTCAGGCTAAATCCTATCTCCAACATATGCTCACAAGAGCTTAATT
1 AGGATTACCAATCCAGGCTAAATCCTATCTGTAACATATGCTCAGAAGAGATCAATT
** * * *
93052862 AGGATTACCAGCCCAAGCTAAATCCTTTCTGTAACATATGCTCAGAAGAGCTCAATT
1 AGGATTACCAATCCAGGCTAAATCCTATCTGTAACATATGCTCAGAAGAGATCAATT
* ** * * *
93052919 AGGATTACCAGTCCAGGAAAAATCTTAAT-TGTAACATATGCTC-GAGAGGGATTATATT
1 AGGATTACCAATCCAGGCTAAATCCT-ATCTGTAACATATGCTCAGA-AGAGATCA-ATT
***
93052977 AGGATTACCAATTTGGGCTAAATCCTATCTGTAA
1 AGGATTACCAATCCAGGCTAAATCCTATCTGTAA
93053011 TGATGTCAAT
Statistics
Matches: 121, Mismatches: 24, Indels: 7
0.80 0.16 0.05
Matches are distributed among these distances:
56 2 0.02
57 91 0.75
58 28 0.23
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (57 bp):
AGGATTACCAATCCAGGCTAAATCCTATCTGTAACATATGCTCAGAAGAGATCAATT
Found at i:93053183 original size:8 final size:8
Alignment explanation
Indices: 93053170--93053195 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
93053160 TCTCATATAT
93053170 TTATGCAA
1 TTATGCAA
93053178 TTATGCAA
1 TTATGCAA
93053186 TTATGCAA
1 TTATGCAA
93053194 TT
1 TT
93053196 CAAATGTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.42
Consensus pattern (8 bp):
TTATGCAA
Found at i:93058895 original size:18 final size:18
Alignment explanation
Indices: 93058874--93058917 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
93058864 GCATATAATG
93058874 CTTAGTAAGTCTGTATAA
1 CTTAGTAAGTCTGTATAA
93058892 CTTAGTAAGTCTGTATAA
1 CTTAGTAAGTCTGTATAA
*
93058910 CTTGGTAA
1 CTTAGTAA
93058918 TTAACTTACC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (18 bp):
CTTAGTAAGTCTGTATAA
Found at i:93059103 original size:141 final size:141
Alignment explanation
Indices: 93058923--93059206 Score: 550
Period size: 141 Copynumber: 2.0 Consensus size: 141
93058913 GGTAATTAAC
93058923 TTACCAACTATTCATATTAAAGATAAACATGTAAATCAGAATCAACCATTTGATCCCAAGCCCTA
1 TTACCAACTATTCATATTAAAGATAAACATGTAAATCAGAATCAACCATTTGATCCCAAGCCCTA
93058988 ACACATATTCTCATCACCCTTGTTAGTAACTGATTTTATATAAACATCAAGAAACACATATATGA
66 ACACATATTCTCATCACCCTTGTTAGTAACTGATTTTATATAAACATCAAGAAACACATATATGA
93059053 GCCCAACAATA
131 GCCCAACAATA
93059064 TTACCAACTATTCATATTAAAGATAAACATGTAAATCAGAATCAACCATTTGATCCCAAGCCCTA
1 TTACCAACTATTCATATTAAAGATAAACATGTAAATCAGAATCAACCATTTGATCCCAAGCCCTA
* *
93059129 ACATATATTCTCATCACCCTTGTTAGTAACTTATTTTATATAAACATCAAGAAACACATATATGA
66 ACACATATTCTCATCACCCTTGTTAGTAACTGATTTTATATAAACATCAAGAAACACATATATGA
93059194 GCCCAACAATA
131 GCCCAACAATA
93059205 TT
1 TT
93059207 CGGATTCTCA
Statistics
Matches: 141, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
141 141 1.00
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.30
Consensus pattern (141 bp):
TTACCAACTATTCATATTAAAGATAAACATGTAAATCAGAATCAACCATTTGATCCCAAGCCCTA
ACACATATTCTCATCACCCTTGTTAGTAACTGATTTTATATAAACATCAAGAAACACATATATGA
GCCCAACAATA
Found at i:93077355 original size:32 final size:32
Alignment explanation
Indices: 93077319--93077383 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 32
93077309 CCTTTTCATA
93077319 TTTCATAT-TCCATAACACTGGGCCGAAGCCTT
1 TTTCATATCT-CATAACACTGGGCCGAAGCCTT
** *
93077351 TTTCATATCTCATATTACTGGGCTGAAGCCTT
1 TTTCATATCTCATAACACTGGGCCGAAGCCTT
93077383 T
1 T
93077384 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 28 0.97
33 1 0.03
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.37
Consensus pattern (32 bp):
TTTCATATCTCATAACACTGGGCCGAAGCCTT
Found at i:93077726 original size:20 final size:20
Alignment explanation
Indices: 93077701--93077767 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
93077691 TTATGAATAC
93077701 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
93077721 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
93077741 GTCATGTGCATATCGTATCA-
1 ATCATGTGCATATCATA-CAT
93077761 ATCATGT
1 ATCATGT
93077768 ATATCAAAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:93077732 original size:11 final size:11
Alignment explanation
Indices: 93077701--93077754 Score: 53
Period size: 11 Copynumber: 5.3 Consensus size: 11
93077691 TTATGAATAC
93077701 ATCATGTGCAT
1 ATCATGTGCAT
*
93077712 ATCA--TACAT
1 ATCATGTGCAT
93077721 ATCATGTGCAT
1 ATCATGTGCAT
*
93077732 ATCA--TACAT
1 ATCATGTGCAT
*
93077741 GTCATGTGCAT
1 ATCATGTGCAT
93077752 ATC
1 ATC
93077755 GTATCAATCA
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
9 15 0.45
11 18 0.55
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.35
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:93085337 original size:32 final size:32
Alignment explanation
Indices: 93085301--93085365 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 32
93085291 CCTTTTCATA
93085301 TTTCATAT-TCCATAACACTGGGCCGAAGCCTT
1 TTTCATATCT-CATAACACTGGGCCGAAGCCTT
**
93085333 TTTCATATCTCATATTACTGGGCCGAAGCCTT
1 TTTCATATCTCATAACACTGGGCCGAAGCCTT
93085365 T
1 T
93085366 ACTGTAAATG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 29 0.97
33 1 0.03
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.35
Consensus pattern (32 bp):
TTTCATATCTCATAACACTGGGCCGAAGCCTT
Found at i:93086365 original size:27 final size:27
Alignment explanation
Indices: 93086325--93086459 Score: 162
Period size: 27 Copynumber: 5.0 Consensus size: 27
93086315 TGTGTAGTAN
* *
93086325 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAAAATTACCGTTTTACCCT
**
93086352 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAAAATTACCGTTTTACCCT
* * * * *
93086379 TGATTTACAGAATTGCTGGTTTACCCT
1 CGATTTACAAAATTACCGTTTTACCCT
* *
93086406 CAATTTACAAAATTATCGTTTTACCCT
1 CGATTTACAAAATTACCGTTTTACCCT
*
93086433 CGATTTACAAAATTACCATTTTACCCT
1 CGATTTACAAAATTACCGTTTTACCCT
93086460 TAATTGTGAA
Statistics
Matches: 87, Mismatches: 21, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 87 1.00
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.39
Consensus pattern (27 bp):
CGATTTACAAAATTACCGTTTTACCCT
Found at i:93086533 original size:54 final size:54
Alignment explanation
Indices: 93086469--93088004 Score: 1900
Period size: 54 Copynumber: 28.4 Consensus size: 54
93086459 TTAATTGTGA
* * *
93086469 AATTACTAAAATACCCTTGTAGGGTAGAATTTCTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * * * **
93086523 AATTACTAAAATACCCTTATAGGATAGAAGTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
** * * * *
93086577 AAAAATTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGAGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * * *
93086631 AATTACTGAAATACCCTTGTAGGGTAGAAATATTGAAACACCCCTGTAGGGTGG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
*
93086685 AATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * *
93086739 AATTA-TCAAAATACCCTTGTAAGGTAGAAATA-TCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAGAATTACT-GAAATACCCCTGTAGGGTAG
* * * * *
93086793 AATTACTAAAATACCCTTGTAAGGTAGAAATACTAAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
** * *
93086847 AATTACCAAAATACCCTTGTAGGGTAGAAATACTGAAATACTCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * * * * * *
93086901 AATTACCGAAATACCCCTATAGGATAGAAATACCGAAATACCCCTGTAGAGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * * *
93086955 AATTACTGAAATACCCTTGTAGGGTAGAAATATTGAAACACCCCTGTAGGGTGG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
*
93087009 AATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * *
93087063 AATTA-TCAAAATACCCTTGTAAGGTAGAAATA-TCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAGAATTACT-GAAATACCCCTGTAGGGTAG
* * * * *
93087117 AATTACTAAAATACCCTTGTAAGGTAGAAATACTAAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
** * *
93087171 AATTACCAAAATACCCTTGTAGGGTAGAAATACTGAAATACTCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * * * * * *
93087225 AATTACCGAAATACCCCTATAGGATAGAAATACCGAAATACCCCTGTAGAGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * * *
93087279 AATTACTGAAATACCCTTGTAGGGTAGAAATATTGAAACACCCCTGTAGGGTGG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
*
93087333 AATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * *
93087387 AATTA-TCAAAATACCCTTGTAAGGTAGAAATA-TCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAGAATTACT-GAAATACCCCTGTAGGGTAG
* * * * *
93087441 AATTACTAAAATACCCTTGTAAGGTAGAAATACTAAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
** * *
93087495 AATTACCAAAATACCCTTGTAGGGTAGAAATACTGAAATACTCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * * * * * *
93087549 AATTACCGAAATACCCCTATAGGATAGAAATACCGAAATACCCCTGTAGAGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * * *
93087603 AATTACTGAAATACCCTTGTAGGGTAGAAATATTGAAACACCCCTGTAGGGTGG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
*
93087657 AATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * *
93087711 AATTA-TCAAAATACCCTTGTAAGGTAGAAATA-TCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAGAATTACT-GAAATACCCCTGTAGGGTAG
* * * * *
93087765 AATTACTAAAATACCCTTGTAAGGTAGAAATACTAAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
** * *
93087819 AATTACCAAAATACCCTTGTAGGGTAGAAATACTGAAATACTCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * * * * * *
93087873 AATTACCGAAATACCCCTATAGGATAGAAATACCGAAATACCCCTGTAGAGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * * *
93087927 AATTACTGAAATACCCTTGTAGGGTAGAAATATTGAAACACCCCTGTAGGGTGG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
*
93087981 AATTACTGAAATACCCCTGTAGGG
1 AATTACTGAAATACCCTTGTAGGG
93088005 NATCCATATA
Statistics
Matches: 1313, Mismatches: 153, Indels: 32
0.88 0.10 0.02
Matches are distributed among these distances:
53 8 0.01
54 1297 0.99
55 8 0.01
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
Found at i:93086615 original size:108 final size:108
Alignment explanation
Indices: 93086469--93088004 Score: 2144
Period size: 108 Copynumber: 14.2 Consensus size: 108
93086459 TTAATTGTGA
* * * * *
93086469 AATTACTAAAATACCCTTGTAGGGTAGAATTTCTGAAATACCCCTATAGGGTAGAATTACTAAAA
1 AATTACTGAAATACCCCTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAGAATTACTAAAA
* * * ***
93086534 TACCCTTATAGGATAGAAGTACCAAAATACCCCTGTAGGGTAG
66 TACCCTTGTAGGGTAGAAATATTGAAATACCCCTGTAGGGTAG
** * * * * *
93086577 AAAAATTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGAGTAGAATTACTGAAA
1 AATTACTGAAATACCCCTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAGAATTACTAAAA
* *
93086642 TACCCTTGTAGGGTAGAAATATTGAAACACCCCTGTAGGGTGG
66 TACCCTTGTAGGGTAGAAATATTGAAATACCCCTGTAGGGTAG
*
93086685 AATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTA-TCAAA
1 AATTACTGAAATACCCCTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAGAATTACT-AAA
* *
93086749 ATACCCTTGTAAGGTAGAAATATCGAAATACCCCTGTAGGGTAG
65 ATACCCTTGTAGGGTAGAAATATTGAAATACCCCTGTAGGGTAG
* * * * * *
93086793 AATTACTAAAATACCCTTGTAAGGTAGAAATACTAAAATACCCTTGTAGGGTAGAATTACCAAAA
1 AATTACTGAAATACCCCTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAGAATTACTAAAA
* *
93086858 TACCCTTGTAGGGTAGAAATACTGAAATACTCCTGTAGGGTAG
66 TACCCTTGTAGGGTAGAAATATTGAAATACCCCTGTAGGGTAG
* * * * * *
93086901 AATTACCGAAATACCCCTATAGGATAGAAATACCGAAATACCCCTGTAGAGTAGAATTACTGAAA
1 AATTACTGAAATACCCCTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAGAATTACTAAAA
* *
93086966 TACCCTTGTAGGGTAGAAATATTGAAACACCCCTGTAGGGTGG
66 TACCCTTGTAGGGTAGAAATATTGAAATACCCCTGTAGGGTAG
*
93087009 AATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTA-TCAAA
1 AATTACTGAAATACCCCTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAGAATTACT-AAA
* *
93087073 ATACCCTTGTAAGGTAGAAATATCGAAATACCCCTGTAGGGTAG
65 ATACCCTTGTAGGGTAGAAATATTGAAATACCCCTGTAGGGTAG
* * * * * *
93087117 AATTACTAAAATACCCTTGTAAGGTAGAAATACTAAAATACCCTTGTAGGGTAGAATTACCAAAA
1 AATTACTGAAATACCCCTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAGAATTACTAAAA
* *
93087182 TACCCTTGTAGGGTAGAAATACTGAAATACTCCTGTAGGGTAG
66 TACCCTTGTAGGGTAGAAATATTGAAATACCCCTGTAGGGTAG
* * * * * *
93087225 AATTACCGAAATACCCCTATAGGATAGAAATACCGAAATACCCCTGTAGAGTAGAATTACTGAAA
1 AATTACTGAAATACCCCTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAGAATTACTAAAA
* *
93087290 TACCCTTGTAGGGTAGAAATATTGAAACACCCCTGTAGGGTGG
66 TACCCTTGTAGGGTAGAAATATTGAAATACCCCTGTAGGGTAG
*
93087333 AATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTA-TCAAA
1 AATTACTGAAATACCCCTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAGAATTACT-AAA
* *
93087397 ATACCCTTGTAAGGTAGAAATATCGAAATACCCCTGTAGGGTAG
65 ATACCCTTGTAGGGTAGAAATATTGAAATACCCCTGTAGGGTAG
* * * * * *
93087441 AATTACTAAAATACCCTTGTAAGGTAGAAATACTAAAATACCCTTGTAGGGTAGAATTACCAAAA
1 AATTACTGAAATACCCCTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAGAATTACTAAAA
* *
93087506 TACCCTTGTAGGGTAGAAATACTGAAATACTCCTGTAGGGTAG
66 TACCCTTGTAGGGTAGAAATATTGAAATACCCCTGTAGGGTAG
* * * * * *
93087549 AATTACCGAAATACCCCTATAGGATAGAAATACCGAAATACCCCTGTAGAGTAGAATTACTGAAA
1 AATTACTGAAATACCCCTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAGAATTACTAAAA
* *
93087614 TACCCTTGTAGGGTAGAAATATTGAAACACCCCTGTAGGGTGG
66 TACCCTTGTAGGGTAGAAATATTGAAATACCCCTGTAGGGTAG
*
93087657 AATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTA-TCAAA
1 AATTACTGAAATACCCCTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAGAATTACT-AAA
* *
93087721 ATACCCTTGTAAGGTAGAAATATCGAAATACCCCTGTAGGGTAG
65 ATACCCTTGTAGGGTAGAAATATTGAAATACCCCTGTAGGGTAG
* * * * * *
93087765 AATTACTAAAATACCCTTGTAAGGTAGAAATACTAAAATACCCTTGTAGGGTAGAATTACCAAAA
1 AATTACTGAAATACCCCTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAGAATTACTAAAA
* *
93087830 TACCCTTGTAGGGTAGAAATACTGAAATACTCCTGTAGGGTAG
66 TACCCTTGTAGGGTAGAAATATTGAAATACCCCTGTAGGGTAG
* * * * * *
93087873 AATTACCGAAATACCCCTATAGGATAGAAATACCGAAATACCCCTGTAGAGTAGAATTACTGAAA
1 AATTACTGAAATACCCCTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAGAATTACTAAAA
* *
93087938 TACCCTTGTAGGGTAGAAATATTGAAACACCCCTGTAGGGTGG
66 TACCCTTGTAGGGTAGAAATATTGAAATACCCCTGTAGGGTAG
93087981 AATTACTGAAATACCCCTGTAGGG
1 AATTACTGAAATACCCCTGTAGGG
93088005 NATCCATATA
Statistics
Matches: 1246, Mismatches: 174, Indels: 16
0.87 0.12 0.01
Matches are distributed among these distances:
107 4 0.00
108 1242 1.00
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (108 bp):
AATTACTGAAATACCCCTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAGAATTACTAAAA
TACCCTTGTAGGGTAGAAATATTGAAATACCCCTGTAGGGTAG
Found at i:93087058 original size:324 final size:324
Alignment explanation
Indices: 93086469--93088004 Score: 2892
Period size: 324 Copynumber: 4.7 Consensus size: 324
93086459 TTAATTGTGA
* * * * * * *
93086469 AATTACTAAAATACCCTTGTAGGGTAGAATTTCTGAAATACCCCTATAGGGTAGAATTACTAAAA
1 AATTACTAAAATACCCTTGTAAGGTAGAAATACTAAAATACCCTTGTAGGGTAGAATTACCAAAA
* * * ** * ** ** * *
93086534 TACCCTTATAGGATAGAAGTACCAAAATACCCCTGTAGGGTAGAAAAATTGAAATACCCTTGTAG
66 TACCCTTGTAGGGTAGAAATACTGAAATACTCCTGTAGGGTAGAATTACCGAAATACCCCTATAG
*
93086599 GGTAGAAATACCGAAATACCCCTGTAGAGTAGAATTACTGAAATACCCTTGTAGGGTAGAAATAT
131 GATAGAAATACCGAAATACCCCTGTAGAGTAGAATTACTGAAATACCCTTGTAGGGTAGAAATAT
93086664 TGAAACACCCCTGTAGGGTGGAATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCC
196 TGAAACACCCCTGTAGGGTGGAATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCC
93086729 TGTAGGGTAGAATTATCAAAATACCCTTGTAAGGTAGAAATATCGAAATACCCCTGTAGGGTAG
261 TGTAGGGTAGAATTATCAAAATACCCTTGTAAGGTAGAAATATCGAAATACCCCTGTAGGGTAG
93086793 AATTACTAAAATACCCTTGTAAGGTAGAAATACTAAAATACCCTTGTAGGGTAGAATTACCAAAA
1 AATTACTAAAATACCCTTGTAAGGTAGAAATACTAAAATACCCTTGTAGGGTAGAATTACCAAAA
93086858 TACCCTTGTAGGGTAGAAATACTGAAATACTCCTGTAGGGTAGAATTACCGAAATACCCCTATAG
66 TACCCTTGTAGGGTAGAAATACTGAAATACTCCTGTAGGGTAGAATTACCGAAATACCCCTATAG
93086923 GATAGAAATACCGAAATACCCCTGTAGAGTAGAATTACTGAAATACCCTTGTAGGGTAGAAATAT
131 GATAGAAATACCGAAATACCCCTGTAGAGTAGAATTACTGAAATACCCTTGTAGGGTAGAAATAT
93086988 TGAAACACCCCTGTAGGGTGGAATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCC
196 TGAAACACCCCTGTAGGGTGGAATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCC
93087053 TGTAGGGTAGAATTATCAAAATACCCTTGTAAGGTAGAAATATCGAAATACCCCTGTAGGGTAG
261 TGTAGGGTAGAATTATCAAAATACCCTTGTAAGGTAGAAATATCGAAATACCCCTGTAGGGTAG
93087117 AATTACTAAAATACCCTTGTAAGGTAGAAATACTAAAATACCCTTGTAGGGTAGAATTACCAAAA
1 AATTACTAAAATACCCTTGTAAGGTAGAAATACTAAAATACCCTTGTAGGGTAGAATTACCAAAA
93087182 TACCCTTGTAGGGTAGAAATACTGAAATACTCCTGTAGGGTAGAATTACCGAAATACCCCTATAG
66 TACCCTTGTAGGGTAGAAATACTGAAATACTCCTGTAGGGTAGAATTACCGAAATACCCCTATAG
93087247 GATAGAAATACCGAAATACCCCTGTAGAGTAGAATTACTGAAATACCCTTGTAGGGTAGAAATAT
131 GATAGAAATACCGAAATACCCCTGTAGAGTAGAATTACTGAAATACCCTTGTAGGGTAGAAATAT
93087312 TGAAACACCCCTGTAGGGTGGAATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCC
196 TGAAACACCCCTGTAGGGTGGAATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCC
93087377 TGTAGGGTAGAATTATCAAAATACCCTTGTAAGGTAGAAATATCGAAATACCCCTGTAGGGTAG
261 TGTAGGGTAGAATTATCAAAATACCCTTGTAAGGTAGAAATATCGAAATACCCCTGTAGGGTAG
93087441 AATTACTAAAATACCCTTGTAAGGTAGAAATACTAAAATACCCTTGTAGGGTAGAATTACCAAAA
1 AATTACTAAAATACCCTTGTAAGGTAGAAATACTAAAATACCCTTGTAGGGTAGAATTACCAAAA
93087506 TACCCTTGTAGGGTAGAAATACTGAAATACTCCTGTAGGGTAGAATTACCGAAATACCCCTATAG
66 TACCCTTGTAGGGTAGAAATACTGAAATACTCCTGTAGGGTAGAATTACCGAAATACCCCTATAG
93087571 GATAGAAATACCGAAATACCCCTGTAGAGTAGAATTACTGAAATACCCTTGTAGGGTAGAAATAT
131 GATAGAAATACCGAAATACCCCTGTAGAGTAGAATTACTGAAATACCCTTGTAGGGTAGAAATAT
93087636 TGAAACACCCCTGTAGGGTGGAATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCC
196 TGAAACACCCCTGTAGGGTGGAATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCC
93087701 TGTAGGGTAGAATTATCAAAATACCCTTGTAAGGTAGAAATATCGAAATACCCCTGTAGGGTAG
261 TGTAGGGTAGAATTATCAAAATACCCTTGTAAGGTAGAAATATCGAAATACCCCTGTAGGGTAG
93087765 AATTACTAAAATACCCTTGTAAGGTAGAAATACTAAAATACCCTTGTAGGGTAGAATTACCAAAA
1 AATTACTAAAATACCCTTGTAAGGTAGAAATACTAAAATACCCTTGTAGGGTAGAATTACCAAAA
93087830 TACCCTTGTAGGGTAGAAATACTGAAATACTCCTGTAGGGTAGAATTACCGAAATACCCCTATAG
66 TACCCTTGTAGGGTAGAAATACTGAAATACTCCTGTAGGGTAGAATTACCGAAATACCCCTATAG
93087895 GATAGAAATACCGAAATACCCCTGTAGAGTAGAATTACTGAAATACCCTTGTAGGGTAGAAATAT
131 GATAGAAATACCGAAATACCCCTGTAGAGTAGAATTACTGAAATACCCTTGTAGGGTAGAAATAT
93087960 TGAAACACCCCTGTAGGGTGGAATTACTGAAATACCCCTGTAGGG
196 TGAAACACCCCTGTAGGGTGGAATTACTGAAATACCCCTGTAGGG
93088005 NATCCATATA
Statistics
Matches: 1192, Mismatches: 20, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
324 1192 1.00
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (324 bp):
AATTACTAAAATACCCTTGTAAGGTAGAAATACTAAAATACCCTTGTAGGGTAGAATTACCAAAA
TACCCTTGTAGGGTAGAAATACTGAAATACTCCTGTAGGGTAGAATTACCGAAATACCCCTATAG
GATAGAAATACCGAAATACCCCTGTAGAGTAGAATTACTGAAATACCCTTGTAGGGTAGAAATAT
TGAAACACCCCTGTAGGGTGGAATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCC
TGTAGGGTAGAATTATCAAAATACCCTTGTAAGGTAGAAATATCGAAATACCCCTGTAGGGTAG
Found at i:93088066 original size:9 final size:9
Alignment explanation
Indices: 93088052--93088128 Score: 55
Period size: 9 Copynumber: 7.9 Consensus size: 9
93088042 ACATCATGTG
93088052 CATATCATA
1 CATATCATA
*
93088061 CATATCATGTG
1 CATATCA--TA
93088072 CATATCATA
1 CATATCATA
* *
93088081 CATGTCATGTG
1 CATATCA--TA
93088092 CATATCATA
1 CATATCATA
*
93088101 CATATCATGTG
1 CATATCA--TA
93088112 CATATCATA
1 CATATCATA
*
93088121 CATGTCAT
1 CATATCAT
93088129 GTGCACATCG
Statistics
Matches: 53, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
9 30 0.57
11 23 0.43
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:93088075 original size:11 final size:11
Alignment explanation
Indices: 93088044--93088119 Score: 74
Period size: 11 Copynumber: 7.5 Consensus size: 11
93088034 TTATGAATAC
93088044 ATCATGTGCAT
1 ATCATGTGCAT
*
93088055 ATCA--TACAT
1 ATCATGTGCAT
93088064 ATCATGTGCAT
1 ATCATGTGCAT
*
93088075 ATCA--TACAT
1 ATCATGTGCAT
*
93088084 GTCATGTGCAT
1 ATCATGTGCAT
*
93088095 ATCA--TACAT
1 ATCATGTGCAT
93088104 ATCATGTGCAT
1 ATCATGTGCAT
93088115 ATCAT
1 ATCAT
93088120 ACATGTCATG
Statistics
Matches: 51, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
9 23 0.45
11 28 0.55
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:93088090 original size:40 final size:40
Alignment explanation
Indices: 93088045--93088150 Score: 178
Period size: 40 Copynumber: 2.6 Consensus size: 40
93088035 TATGAATACA
93088045 TCATGTGCATATCATACATATCATGTGCATATCATACATG
1 TCATGTGCATATCATACATATCATGTGCATATCATACATG
93088085 TCATGTGCATATCATACATATCATGTGCATATCATACATG
1 TCATGTGCATATCATACATATCATGTGCATATCATACATG
* *
93088125 TCATGTGCACATCGTATCA-ATCATGT
1 TCATGTGCATATCATA-CATATCATGT
93088151 ATATCAAAAT
Statistics
Matches: 63, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
40 61 0.97
41 2 0.03
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.35
Consensus pattern (40 bp):
TCATGTGCATATCATACATATCATGTGCATATCATACATG
Found at i:93088150 original size:20 final size:20
Alignment explanation
Indices: 93088044--93088133 Score: 162
Period size: 20 Copynumber: 4.5 Consensus size: 20
93088034 TTATGAATAC
93088044 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
93088064 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
93088084 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
93088104 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
93088124 GTCATGTGCA
1 ATCATGTGCA
93088134 CATCGTATCA
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 67 1.00
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:93106187 original size:19 final size:19
Alignment explanation
Indices: 93106163--93106216 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
93106153 ATGGTGTTTA
93106163 GTAGATGGGGGTAGGATAT
1 GTAGATGGGGGTAGGATAT
*
93106182 GTAGAT-GGTGT--G-TA-
1 GTAGATGGGGGTAGGATAT
93106196 GTAGATGGGGGTAGGATAT
1 GTAGATGGGGGTAGGATAT
93106215 GT
1 GT
93106217 TATGATTATG
Statistics
Matches: 28, Mismatches: 2, Indels: 10
0.70 0.05 0.25
Matches are distributed among these distances:
14 6 0.21
15 6 0.21
16 1 0.04
17 1 0.04
18 6 0.21
19 8 0.29
ACGTcount: A:0.24, C:0.00, G:0.46, T:0.30
Consensus pattern (19 bp):
GTAGATGGGGGTAGGATAT
Found at i:93106198 original size:33 final size:33
Alignment explanation
Indices: 93106151--93106216 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
93106141 GGCTAGACAG
*
93106151 AGATGGTGTTTAGTAGATGGGGGTAGGATATGT
1 AGATGGTGTGTAGTAGATGGGGGTAGGATATGT
93106184 AGATGGTGTGTAGTAGATGGGGGTAGGATATGT
1 AGATGGTGTGTAGTAGATGGGGGTAGGATATGT
93106217 TATGATTATG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.24, C:0.00, G:0.44, T:0.32
Consensus pattern (33 bp):
AGATGGTGTGTAGTAGATGGGGGTAGGATATGT
Found at i:93107401 original size:31 final size:31
Alignment explanation
Indices: 93107335--93107405 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 31
93107325 AACAGCCTAG
* *
93107335 TGACTTAAAAAAAAACTTTTGAATAATTCAG
1 TGACTTAAATAAAAACTTTTGAATAATTCAA
* * * *
93107366 TGACTTAAATGAAAATTTTTGAATAGTTTAA
1 TGACTTAAATAAAAACTTTTGAATAATTCAA
93107397 TGAC-TAAAT
1 TGACTTAAAT
93107406 TGTAACTTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
30 5 0.15
31 29 0.85
ACGTcount: A:0.45, C:0.07, G:0.11, T:0.37
Consensus pattern (31 bp):
TGACTTAAATAAAAACTTTTGAATAATTCAA
Found at i:93110798 original size:48 final size:48
Alignment explanation
Indices: 93110716--93110807 Score: 130
Period size: 48 Copynumber: 1.9 Consensus size: 48
93110706 TAGGGTTATG
* *
93110716 TGTGATCCCATGTAAGACCATGCCCAGGACATGGCATTGGCATCGGTA
1 TGTGATCCCATGTAAGACCATACACAGGACATGGCATTGGCATCGGTA
* ** *
93110764 TGTGATCCCATGTAAGACCATATATGGGATATGGCATTGGCATC
1 TGTGATCCCATGTAAGACCATACACAGGACATGGCATTGGCATC
93110808 TTATTATGTG
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 38 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATACACAGGACATGGCATTGGCATCGGTA
Found at i:93115473 original size:7 final size:7
Alignment explanation
Indices: 93115458--93115487 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
93115448 TGCATAACAG
93115458 ATCAGAT
1 ATCAGAT
*
93115465 ATCAAAT
1 ATCAGAT
93115472 ATCAGAT
1 ATCAGAT
93115479 ATCAGAT
1 ATCAGAT
93115486 AT
1 AT
93115488 TAGAATTCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.47, C:0.13, G:0.10, T:0.30
Consensus pattern (7 bp):
ATCAGAT
Found at i:93115596 original size:40 final size:40
Alignment explanation
Indices: 93115544--93115620 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
93115534 ACACACCATG
* *
93115544 TGGGTATAAAATCGACCCA-CCCGTCCCTACACACCAAGTA
1 TGGGGATAAAATCGACCCATCCAG-CCCTACACACCAAGTA
*
93115584 TGGGGATAAAATCGACCCATCTAGCCCTACACACCAA
1 TGGGGATAAAATCGACCCATCCAGCCCTACACACCAA
93115621 ATGGTACCTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
40 31 0.94
41 2 0.06
ACGTcount: A:0.34, C:0.34, G:0.16, T:0.17
Consensus pattern (40 bp):
TGGGGATAAAATCGACCCATCCAGCCCTACACACCAAGTA
Found at i:93117285 original size:22 final size:22
Alignment explanation
Indices: 93117257--93117299 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
93117247 TGTGAGTGGG
93117257 ATCAGAGTGATAGCGTCTCAAT
1 ATCAGAGTGATAGCGTCTCAAT
93117279 ATCAGAGTGATAGCGTCTCAA
1 ATCAGAGTGATAGCGTCTCAA
93117300 CATTGACACG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.26
Consensus pattern (22 bp):
ATCAGAGTGATAGCGTCTCAAT
Found at i:93122652 original size:38 final size:40
Alignment explanation
Indices: 93122610--93122694 Score: 111
Period size: 40 Copynumber: 2.2 Consensus size: 40
93122600 TACACCATCT
* * *
93122610 CCATCCAACCCAACACACC-A-TGTGGGGATAAAATCGAC
1 CCATCCAACCCAACAAACCAAGTATGGGGATAAAATCAAC
* *
93122648 CCATCCAGCCCTACAAACCAAGTATGGGGATAAAATCAAC
1 CCATCCAACCCAACAAACCAAGTATGGGGATAAAATCAAC
93122688 CCATCCA
1 CCATCCA
93122695 GTCCTACACA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
38 16 0.40
39 1 0.03
40 23 0.57
ACGTcount: A:0.38, C:0.34, G:0.14, T:0.14
Consensus pattern (40 bp):
CCATCCAACCCAACAAACCAAGTATGGGGATAAAATCAAC
Done.