Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 305 of 313
Found at i:93707584 original size:11 final size:11
Alignment explanation
Indices: 93707568--93707594 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
93707558 CTACATGTTT
93707568 AGCTTTACGAA
1 AGCTTTACGAA
93707579 AGCTTTACGAA
1 AGCTTTACGAA
93707590 AGCTT
1 AGCTT
93707595 ACTAAGTAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.30
Consensus pattern (11 bp):
AGCTTTACGAA
Found at i:93712312 original size:23 final size:23
Alignment explanation
Indices: 93712286--93712358 Score: 128
Period size: 23 Copynumber: 3.2 Consensus size: 23
93712276 AGTGCCACAT
93712286 TGATATGTAGCCGAAGCTACCAC
1 TGATATGTAGCCGAAGCTACCAC
*
93712309 TGATATGTAGCCGTAGCTACCAC
1 TGATATGTAGCCGAAGCTACCAC
*
93712332 TGAAATGTAGCCGAAGCTACCAC
1 TGATATGTAGCCGAAGCTACCAC
93712355 TGAT
1 TGAT
93712359 CAATAACACT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.23
Consensus pattern (23 bp):
TGATATGTAGCCGAAGCTACCAC
Found at i:93712458 original size:8 final size:8
Alignment explanation
Indices: 93712445--93712473 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
93712435 ACTCGGGACT
93712445 CACTGTAA
1 CACTGTAA
93712453 CACTGTAA
1 CACTGTAA
93712461 CACTGTAA
1 CACTGTAA
93712469 CACTG
1 CACTG
93712474 GTCTCTAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (8 bp):
CACTGTAA
Found at i:93719362 original size:23 final size:22
Alignment explanation
Indices: 93719316--93719364 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
93719306 TAAGTAACTC
*
93719316 AATTCCCTATAAAAACTCAAGT
1 AATTCCCTATAAAAACCCAAGT
*
93719338 AATTCCCTATAAAAACCCTAGGT
1 AATTCCCTATAAAAACCC-AAGT
93719361 AATT
1 AATT
93719365 ATAGGAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 17 0.71
23 7 0.29
ACGTcount: A:0.43, C:0.22, G:0.06, T:0.29
Consensus pattern (22 bp):
AATTCCCTATAAAAACCCAAGT
Found at i:93719395 original size:22 final size:22
Alignment explanation
Indices: 93719347--93719396 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
93719337 TAATTCCCTA
93719347 TAAAAACCCTAGGTAATTATAG
1 TAAAAACCCTAGGTAATTATAG
* *
93719369 GAAAAA-CCTAGGTAATTCATTG
1 TAAAAACCCTAGGTAATT-ATAG
93719391 TAAAAA
1 TAAAAA
93719397 TTCAAAATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 11 0.46
22 13 0.54
ACGTcount: A:0.48, C:0.12, G:0.14, T:0.26
Consensus pattern (22 bp):
TAAAAACCCTAGGTAATTATAG
Found at i:93736748 original size:9 final size:9
Alignment explanation
Indices: 93736734--93736766 Score: 66
Period size: 9 Copynumber: 3.7 Consensus size: 9
93736724 TATAGATAAC
93736734 ATGCTTAAA
1 ATGCTTAAA
93736743 ATGCTTAAA
1 ATGCTTAAA
93736752 ATGCTTAAA
1 ATGCTTAAA
93736761 ATGCTT
1 ATGCTT
93736767 GTATATAGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36
Consensus pattern (9 bp):
ATGCTTAAA
Found at i:93749057 original size:35 final size:35
Alignment explanation
Indices: 93748999--93749072 Score: 89
Period size: 35 Copynumber: 2.1 Consensus size: 35
93748989 TGATTTGCAC
* * *
93748999 ATCTGTATCTGTATCTAAGATGGGC-TAAGGCCCGA
1 ATCTATATCTGTATCCAAGATGGGCTTAA-GCCCAA
93749034 ATCTATATCTGTATCCATA-ATGGGCTTAAGCCCAA
1 ATCTATATCTGTATCCA-AGATGGGCTTAAGCCCAA
93749069 ATCT
1 ATCT
93749073 GTAACTGACT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
35 30 0.88
36 4 0.12
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (35 bp):
ATCTATATCTGTATCCAAGATGGGCTTAAGCCCAA
Found at i:93750943 original size:22 final size:22
Alignment explanation
Indices: 93750891--93750943 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 22
93750881 TTATCTTTTA
** *
93750891 AAAAAATAAAAATTATAGAAAT
1 AAAAAATAAAAAAGAGAGAAAT
* * *
93750913 TAAATATAAAAAAGAGAGATAT
1 AAAAAATAAAAAAGAGAGAAAT
93750935 AAAAAATAA
1 AAAAAATAA
93750944 TATAGTTGTT
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.72, C:0.00, G:0.08, T:0.21
Consensus pattern (22 bp):
AAAAAATAAAAAAGAGAGAAAT
Found at i:93751171 original size:61 final size:62
Alignment explanation
Indices: 93751092--93751214 Score: 230
Period size: 61 Copynumber: 2.0 Consensus size: 62
93751082 ATATATAAAC
*
93751092 ATTATTATTAAACAAAACCGTCTCGGAACAATTTAGTTATGCTTAAGACACCATTTTTTTGT
1 ATTATTAATAAACAAAACCGTCTCGGAACAATTTAGTTATGCTTAAGACACCATTTTTTTGT
93751154 ATTATTAAT-AACAAAACCGTCTCGGAACAATTTAGTTATGCTTAAGACACCATTTTTTTGT
1 ATTATTAATAAACAAAACCGTCTCGGAACAATTTAGTTATGCTTAAGACACCATTTTTTTGT
93751215 GAGAATGATG
Statistics
Matches: 60, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
61 52 0.87
62 8 0.13
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.38
Consensus pattern (62 bp):
ATTATTAATAAACAAAACCGTCTCGGAACAATTTAGTTATGCTTAAGACACCATTTTTTTGT
Found at i:93751977 original size:15 final size:15
Alignment explanation
Indices: 93751957--93751986 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
93751947 TTTAATCCTT
*
93751957 TATAAATTATAAAAA
1 TATAAACTATAAAAA
93751972 TATAAACTATAAAAA
1 TATAAACTATAAAAA
93751987 ATTAAAATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (15 bp):
TATAAACTATAAAAA
Found at i:93753329 original size:20 final size:19
Alignment explanation
Indices: 93753304--93753386 Score: 67
Period size: 20 Copynumber: 4.1 Consensus size: 19
93753294 GCATGTAAGC
*
93753304 ATTTAATTAATTTTTTTAAA
1 ATTTAA-TAATTTTTTAAAA
* * *
93753324 ATTTAAAATATTTTTTTATA
1 ATTTAATA-ATTTTTTAAAA
*
93753344 ATGTTAATAGTTTTTTAAATA
1 AT-TTAATAATTTTTTAAA-A
*
93753365 ATTTCAATGATTTTTTAAAA
1 ATTT-AATAATTTTTTAAAA
93753385 AT
1 AT
93753387 AATTTATATA
Statistics
Matches: 51, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
19 1 0.02
20 30 0.59
21 20 0.39
ACGTcount: A:0.40, C:0.01, G:0.04, T:0.55
Consensus pattern (19 bp):
ATTTAATAATTTTTTAAAA
Found at i:93755809 original size:7 final size:7
Alignment explanation
Indices: 93755786--93755820 Score: 52
Period size: 7 Copynumber: 4.7 Consensus size: 7
93755776 TTATTTCAAT
93755786 GGTTTAG
1 GGTTTAG
93755793 GGCTTTTAG
1 GG--TTTAG
93755802 GGTTTAG
1 GGTTTAG
93755809 GGTTTAG
1 GGTTTAG
93755816 GGTTT
1 GGTTT
93755821 TAGTATTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
7 19 0.73
9 7 0.27
ACGTcount: A:0.11, C:0.03, G:0.40, T:0.46
Consensus pattern (7 bp):
GGTTTAG
Found at i:93758465 original size:30 final size:30
Alignment explanation
Indices: 93758421--93758492 Score: 101
Period size: 30 Copynumber: 2.3 Consensus size: 30
93758411 AAAAAAAATC
93758421 AATTCAATTCTTTTTAAAAGGTTGA-TGATCAA
1 AATT-AATT-TTTTTAAAAGGTTGAGTG-TCAA
93758453 AATTAATTTTTTTAAAAGGTTGAGTGTCAA
1 AATTAATTTTTTTAAAAGGTTGAGTGTCAA
*
93758483 ATTTAATTTT
1 AATTAATTTT
93758493 AAAAAAGGAC
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
30 28 0.74
31 6 0.16
32 4 0.11
ACGTcount: A:0.36, C:0.06, G:0.12, T:0.46
Consensus pattern (30 bp):
AATTAATTTTTTTAAAAGGTTGAGTGTCAA
Found at i:93758498 original size:29 final size:30
Alignment explanation
Indices: 93758436--93758500 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
93758426 AATTCTTTTT
**
93758436 AAAAGGTTGATGATCAAAATTAATTTTTTT
1 AAAAGGTTGATGATCAAAATTAATTTTTAA
*
93758466 AAAAGGTTGAGTG-TCAAATTTAA-TTTTAA
1 AAAAGGTTGA-TGATCAAAATTAATTTTTAA
93758495 AAAAGG
1 AAAAGG
93758501 ACCAAATTGA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 10 0.32
30 19 0.61
31 2 0.06
ACGTcount: A:0.43, C:0.03, G:0.17, T:0.37
Consensus pattern (30 bp):
AAAAGGTTGATGATCAAAATTAATTTTTAA
Found at i:93767249 original size:60 final size:62
Alignment explanation
Indices: 93767149--93767311 Score: 176
Period size: 60 Copynumber: 2.7 Consensus size: 62
93767139 AACTGTGTTA
* * * *
93767149 ATATGGGCAAGACCCAATATA-TCTCA-ACTTGTAATAGGGCTACGACCCAGATTGATATTG
1 ATATGGGCTAGACCCAGTATACTCTGATACTTGTAATAGGGCTACGACCCAGATTAATATTG
* * *
93767209 ATATGGGCTAGACCCAGTATACTCTGATA-TTGTAA-GGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGACCCAGTATACTCTGATACTTGTAATAGGGCTACGACCCAGATTAATATTG
* **
93767269 ATATGGGCTAAGGCCCAGT-TAGCTCTGATTTTTG-AATAGGGCT
1 ATATGGGCT-AGACCCAGTATA-CTCTGATACTTGTAATAGGGCT
93767312 TAGGCCCAGT
Statistics
Matches: 87, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
60 51 0.59
61 27 0.31
62 9 0.10
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (62 bp):
ATATGGGCTAGACCCAGTATACTCTGATACTTGTAATAGGGCTACGACCCAGATTAATATTG
Found at i:93769584 original size:43 final size:43
Alignment explanation
Indices: 93769528--93769651 Score: 153
Period size: 43 Copynumber: 2.9 Consensus size: 43
93769518 TATCAAATTG
* *
93769528 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTG-T-AT
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAAT
*
93769569 TGAGGTTACGTGTAAGACCATGTTTGGGACATTGGCATCGTTAAT
1 TGA--TTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAAT
* * * *
93769614 TGATTTCGTGTAAGACCTTGTCTGGGATAGTGGCATCG
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCG
93769652 ATATGTGATA
Statistics
Matches: 71, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
41 3 0.04
43 62 0.87
44 1 0.01
45 5 0.07
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.34
Consensus pattern (43 bp):
TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAAT
Found at i:93773001 original size:40 final size:40
Alignment explanation
Indices: 93772944--93773209 Score: 333
Period size: 40 Copynumber: 6.7 Consensus size: 40
93772934 CTAACGGGGT
* * * *
93772944 TAAGTCCCAAAGACATTTGTGCTAGTGATTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGC
* *
93772984 TAAGTCCCGAAGGCATTTGTGTGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGC
*
93773024 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGC
* *
93773064 TAAG-CCTCGAAGACATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCC-CGAAGGCATTTGTGCGAGTGACTAATTCCGGGC
* *
93773104 TAAGCCCCGAAGGCATTTGTGCGAGTAACT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TCCGGGC
* * *
93773144 TAAGTCCCGAAGGCATTTGTGCTAGTGAC-CATATCCGGAC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TCCGGGC
* *
93773184 TAAGACCCGAAGGC-CTTGTGCGAGTG
1 TAAGTCCCGAAGGCATTTGTGCGAGTG
93773210 GTTATATCCG
Statistics
Matches: 205, Mismatches: 17, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
39 14 0.07
40 189 0.92
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGC
Found at i:93788049 original size:429 final size:427
Alignment explanation
Indices: 93787178--93789334 Score: 1449
Period size: 422 Copynumber: 5.0 Consensus size: 427
93787168 TAATTTGCTT
*
93787178 TAAACGATTAATAAGTCTATCTTACGTACTATTATTCTTTTTTAGGATAAAATATCATCTTTAAC
1 TAAACGATTAATAAGTCTATCTTACGTACTATTATTCTTTTTTAGGATAAAATATCAGCTTTAAC
93787243 TGAATATTAGTAATAAAGAAAGACCAAAGACCATAAGTGAAGACATTTACAGCATCTTCCTCTAT
66 TGAATATTAGTAATAAAGAAAGACCAAAGACCATAAGTGAAGACATTTACAGCATCTTCCTCTAT
93787308 AATTGCCTTCCCACTTTACCACTTTTTCTTTTACTTTAATGTATTTTATGTACCATATGTTTCAT
131 AATTGCCTTCCCACTTTACCACTTTTTCTTTTACTTTAATGTATTTTATGTACCATATGTTTCAT
*
93787373 GTTTCATTTTTTGCCTTTTGCTTTACCAATCAAAACCCATTTTGCCTTAATAATTGAACGATATT
196 G-------TTTTGCCTTTTGCTTTTCCAATCAAAACCCATTTTGCCTTAATAATTGAACGATATT
93787438 TGGATTTATTTAAATGAATCAAATCCACAATATCTGTCCAAGAAAATTAAGATTAAAAATATGTA
254 TGGATTTATTTAAATGAATCAAATCCACAATATCTGTCCAAGAAAATTAAGATTAAAAATATGTA
* *** * * ** * ** *
93787503 TAAACTAC-TCAATTAGTCAATA--AAATAAACATCTTACTATT--TT-AACCTGTCAAAATCAT
319 TAAACCACAT-AATTAGTCAATATTTTTTAAACTTTTTGTTTTTAATTAAAAATGTAAAAAT--T
* * * * *
93787562 GTCATGAATCT--CATCAG-T-TATGA-AG--TCAAAAG-AAATAAT-TGG
381 TTCA--AATATAACATCTGTTGTTTGATAGTTTTAAAAGTAAA-AATAT-G
93787604 CTTTAAACGATTAATAAGTCTATCTTACGTACTATTATTCTTTTTTAGGATAAAATATCAGCTTT
1 ---TAAACGATTAATAAGTCTATCTTACGTACTATTATTCTTTTTTAGGATAAAATATCAGCTTT
93787669 AACTGAATATTAGTAATAAAGAAAGACCAAAGACCATAAGTGAAGACATTTACAGCATCTTCCTC
63 AACTGAATATTAGTAATAAAGAAAGACCAAAGACCATAAGTGAAGACATTTACAGCATCTTCCTC
93787734 TATAATTGCCTTCCCACTTTACCACTTTTTCTTTTACTTTAATGTATTTTATGTACCATATGTTT
128 TATAATTGCCTTCCCACTTTACCACTTTTTCTTTTACTTTAATGTATTTTATGTACCATATGTTT
93787799 CATGTTTTGCCTTTTGCTTTTCCAATCAAAACCCATTTTGCCTTAATAATTGAACGATATTTGGA
193 CATGTTTTGCCTTTTGCTTTTCCAATCAAAACCCATTTTGCCTTAATAATTGAACGATATTTGGA
93787864 TTTATTTAAATGAATCAAATCCACAATATCTGTCCAAGAAAATTAAGATTAAAAATATGTATAAA
258 TTTATTTAAATGAATCAAATCCACAATATCTGTCCAAGAAAATTAAGATTAAAAATATGTATAAA
* * *
93787929 CCACATAATTAGTGAATATTTTTTTTAAGTTTTTGTTTTGGTAATTAAAAATG-AAAAATTTTCA
323 CCACATAATTAGTCAATA-TTTTTTAAACTTTTTGTTTT--TAATTAAAAATGTAAAAATTTTCA
* *
93787993 AATATAACA-CTGTTGTTTGATAGTTTTTTATAGTATAAAATATG
385 AATATAACATCTGTTGTTTGATAG-TTTTAAAAGTA-AAAATATG
** * * * * ** ***
93788037 -AATA-TTTTAATAA-TATAAATAC-TA-GTA-TTTGTTTATCTTGTTTAGCTTCGTATAT--GT
1 TAA-ACGATTAATAAGTCT--AT-CTTACGTACTAT-TAT-TCTTTTTTAGGATAAAATATCAG-
* * * * * * * *
93788094 CTTCTAACTGTAATGTGTCACTATCTACTCTCATATATATAATA-TATGTAGCTCCA-AA-TTAA
59 CTT-TAACTG-AATAT-T-AGTA---A---T-A-A-AGA-AAGACCA--AAG-ACCATAAGTGAA
* * * * * * ** * ** **
93788156 -A-TTTTAATAG-A-CTT--TGGT-T-ATT--CTT--AAGTCTATAAGCTATTAGTTGTTA-TAA
107 GACATTT-ACAGCATCTTCCT-CTATAATTGCCTTCCCACTTTACCA-CTTTTTCTT-TTACTTT
* * ** * * * **** **** * * * * *
93788208 AATTTTATTTTATCATAAAATCA-ATTTC--G-GTTGTCAAAAGAAAATGCATTTATAA--TATT
168 AA-TGTATTTTAT-GTACCAT-ATGTTTCATGTTTTGCCTTTTGCTTTTCCAATCAAAACCCATT
* * * * *
93788267 TTGTTTCATTAA-AAAT-AAC--T-TTTAGAAAGTTT-TGTCAAA-CAAT-AAA---A-AATAT-
230 TTG---CCTTAATAATTGAACGATATTT-G-GA-TTTAT-TTAAATGAATCAAATCCACAATATC
* * * * ** *** * * * * *
93788319 TTTACTCAA-AATCATTCAAATATTAAAAAAATCAATTTTCCATAAAATCAATTC-A-ATTTTTA
288 TGT-C-CAAGAA-AATT--AAGATTAAAAATATGTATAAACCACATAAT-TAGTCAATATTTTTT
* * * * ** * * *
93788381 AAAATATTTTCCGAAAATTATTCTTAATAAAACAAGCATCTCACTATTTT-AACCTGTAAAAATC
347 AAACT-TTTT--G-----T-TT-TTAAT-TAA-AA--ATGTAAAAATTTTCAA-ATAT-AACATC
* *
93788445 ATGTCATGAATCTT-ATCAGTTATGAAGTCAAAG-AAATTAATTTG
396 -TGT--TG--T-TTGAT-AGTT-T----TAAAAGTAAA--AATATG
*
93788489 CTTTAAACGATTAATAAGTCTATCTTACGTACTATTATTCTTTTTTAGGATAAAATATCATCTTT
1 ---TAAACGATTAATAAGTCTATCTTACGTACTATTATTCTTTTTTAGGATAAAATATCAGCTTT
93788554 AACTGAATATTAGTAATAAAGAAAGACCAAAGACCATAAGTGAAGACATTTACAGCATCTTCCTC
63 AACTGAATATTAGTAATAAAGAAAGACCAAAGACCATAAGTGAAGACATTTACAGCATCTTCCTC
93788619 TATAATTGCCTTCCCACTTTACCACTTTTTCTTTTACTTTAATGTATTTTATGTACCATATGTTT
128 TATAATTGCCTTCCCACTTTACCACTTTTTCTTTTACTTTAATGTATTTTATGTACCATATGTTT
93788684 CATGTTTTGCCTTTTGCTTTTCCAATCAAAACCCATTTTGCCTTAATAATTGAACGATATTTGGA
193 CATGTTTTGCCTTTTGCTTTTCCAATCAAAACCCATTTTGCCTTAATAATTGAACGATATTTGGA
93788749 TTTATTTAAATGAATCAAATCCACAATATCTGTCCAAGAAAATTAAGATTAAAAATATGTATAAA
258 TTTATTTAAATGAATCAAATCCACAATATCTGTCCAAGAAAATTAAGATTAAAAATATGTATAAA
* *** * * ** * ** * *
93788814 CTAC-TCAATTAGTCAATA--AAATAAACATCTTACTATT--TT-AACCTGTCAAAATCATGTCA
323 CCACAT-AATTAGTCAATATTTTTTAAACTTTTTGTTTTTAATTAAAAATGTAAAAAT--TTTCA
* * * *
93788873 TGAATCT--CATCAG-T-TATGA-AG--TCAAAAG-AAATAAT-TGG
385 --AATATAACATCTGTTGTTTGATAGTTTTAAAAGTAAA-AATAT-G
93788911 CTTTAAACGATTAATAAGTCTATCTTACGTACTATTATTCTTTTTTAGGATAAAATATCAGCTTT
1 ---TAAACGATTAATAAGTCTATCTTACGTACTATTATTCTTTTTTAGGATAAAATATCAGCTTT
*
93788976 AACTGAATATTAGTAATAAAGAAAGACCAAAGACCATAAGTGAAGACATTTTACAACATCTTCCT
63 AACTGAATATTAGTAATAAAGAAAGACCAAAGACCATAAGTGAAGACA-TTTACAGCATCTTCCT
* * *
93789041 TTATAATTGCCTTCCTACTTTACCACTTTTTCTTTCACTTTAATGTATTTTTATGTACCATATGT
127 CTATAATTGCCTTCCCACTTTACCACTTTTTCTTTTACTTTAATGTA-TTTTATGTACCATATGT
*
93789106 TTCATGTTTCATTTTTTGCCTTTTGCTTTACCAATCAAAACCCATTTTGCCTTAATAATTGAACG
191 TTCATG-------TTTTGCCTTTTGCTTTTCCAATCAAAACCCATTTTGCCTTAATAATTGAACG
93789171 ATATTTGGATTTATTTAAATGAATC-AATCCACAATATCTGTCCAAGAAAATTAAGATTAAAAAT
249 ATATTTGGATTTATTTAAATGAATCAAATCCACAATATCTGTCCAAGAAAATTAAGATTAAAAAT
* * *
93789235 ATGTATAAACCACATAATTAGTGAATATTTTTTTTAAGTTTTTGTTTTGGTAATTAAAAATG-AA
314 ATGTATAAACCACATAATTAGTCAATA-TTTTTTAAACTTTTTGTTTT--TAATTAAAAATGTAA
93789299 AAATTTTCAAATATAACA-CTGTTGTTTGATAGTTTT
376 AAATTTTCAAATATAACATCTGTTGTTTGATAGTTTT
93789335 TTATAGTATA
Statistics
Matches: 1319, Mismatches: 231, Indels: 346
0.70 0.12 0.18
Matches are distributed among these distances:
421 1 0.00
422 256 0.19
423 67 0.05
424 23 0.02
425 14 0.01
426 10 0.01
427 24 0.02
428 14 0.01
429 246 0.19
430 101 0.08
431 94 0.07
432 17 0.01
433 40 0.03
434 20 0.02
435 29 0.02
436 17 0.01
437 16 0.01
438 13 0.01
439 10 0.01
440 18 0.01
441 14 0.01
442 16 0.01
443 18 0.01
444 9 0.01
445 11 0.01
446 3 0.00
447 7 0.01
448 9 0.01
449 9 0.01
450 17 0.01
451 16 0.01
452 32 0.02
453 11 0.01
454 19 0.01
455 36 0.03
456 40 0.03
457 5 0.00
458 7 0.01
459 8 0.01
460 2 0.00
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.40
Consensus pattern (427 bp):
TAAACGATTAATAAGTCTATCTTACGTACTATTATTCTTTTTTAGGATAAAATATCAGCTTTAAC
TGAATATTAGTAATAAAGAAAGACCAAAGACCATAAGTGAAGACATTTACAGCATCTTCCTCTAT
AATTGCCTTCCCACTTTACCACTTTTTCTTTTACTTTAATGTATTTTATGTACCATATGTTTCAT
GTTTTGCCTTTTGCTTTTCCAATCAAAACCCATTTTGCCTTAATAATTGAACGATATTTGGATTT
ATTTAAATGAATCAAATCCACAATATCTGTCCAAGAAAATTAAGATTAAAAATATGTATAAACCA
CATAATTAGTCAATATTTTTTAAACTTTTTGTTTTTAATTAAAAATGTAAAAATTTTCAAATATA
ACATCTGTTGTTTGATAGTTTTAAAAGTAAAAATATG
Found at i:93790439 original size:22 final size:22
Alignment explanation
Indices: 93790411--93790481 Score: 90
Period size: 22 Copynumber: 3.2 Consensus size: 22
93790401 TAAGTAACTC
*
93790411 AATTCCCTATAAAAACCCAAGT
1 AATTCCCTATAAAAACCCAGGT
93790433 AATTCCCTATAAAAACCCTAGGT
1 AATTCCCTATAAAAACCC-AGGT
* * *
93790456 AATT-ACAATAAAAACCTAGGT
1 AATTCCCTATAAAAACCCAGGT
93790477 AATTC
1 AATTC
93790482 ATTGTAAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
21 8 0.19
22 28 0.65
23 7 0.16
ACGTcount: A:0.45, C:0.23, G:0.07, T:0.25
Consensus pattern (22 bp):
AATTCCCTATAAAAACCCAGGT
Found at i:93794144 original size:20 final size:21
Alignment explanation
Indices: 93794104--93794144 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
93794094 GTCCCTTGTA
*
93794104 TTTTGTAAAATTTGCTAAGTT
1 TTTTGTAAAATTTCCTAAGTT
*
93794125 TTTTG-AAAATTTCCTGAGTT
1 TTTTGTAAAATTTCCTAAGTT
93794145 ATCGGTTTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.27, C:0.07, G:0.15, T:0.51
Consensus pattern (21 bp):
TTTTGTAAAATTTCCTAAGTT
Found at i:93795879 original size:23 final size:23
Alignment explanation
Indices: 93795847--93795902 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 23
93795837 CGACGAGTGC
* *
93795847 TCTTT-TTTCAGTGTTTACCATT
1 TCTTTCTTTCAGAGTTCACCATT
*
93795869 TCTTTCTTTCAGAGTTCGCCATT
1 TCTTTCTTTCAGAGTTCACCATT
93795892 TCTTTCTTTCA
1 TCTTTCTTTCA
93795903 AATTTTACCA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 5 0.17
23 25 0.83
ACGTcount: A:0.12, C:0.23, G:0.09, T:0.55
Consensus pattern (23 bp):
TCTTTCTTTCAGAGTTCACCATT
Found at i:93795963 original size:28 final size:29
Alignment explanation
Indices: 93795917--93795982 Score: 91
Period size: 28 Copynumber: 2.3 Consensus size: 29
93795907 TTACCAAGAG
93795917 GGCT-TCCTTTTCAGAGGTTCCCCACAAA
1 GGCTATCCTTTTCAGAGGTTCCCCACAAA
* * *
93795945 TGCTATCCTTTT-AGAGGTTCGCTACAAA
1 GGCTATCCTTTTCAGAGGTTCCCCACAAA
93795973 GGCTATCCTT
1 GGCTATCCTT
93795983 CCATTAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 26 0.79
29 7 0.21
ACGTcount: A:0.21, C:0.27, G:0.18, T:0.33
Consensus pattern (29 bp):
GGCTATCCTTTTCAGAGGTTCCCCACAAA
Found at i:93799694 original size:18 final size:18
Alignment explanation
Indices: 93799671--93799711 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
93799661 GAATATTGAA
93799671 TAATAAAAATATAGTATG
1 TAATAAAAATATAGTATG
93799689 TAATAAAAATATAGTATG
1 TAATAAAAATATAGTATG
*
93799707 AAATA
1 TAATA
93799712 TAATATGGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.10, T:0.32
Consensus pattern (18 bp):
TAATAAAAATATAGTATG
Found at i:93800089 original size:14 final size:14
Alignment explanation
Indices: 93800059--93800133 Score: 55
Period size: 14 Copynumber: 5.3 Consensus size: 14
93800049 ACAATTTTAA
93800059 AAAATATAT-AAA-
1 AAAATATATAAAAT
*
93800071 GAAATATATAAAAT
1 AAAATATATAAAAT
*
93800085 AAAATATATAATAT
1 AAAATATATAAAAT
* * *
93800099 AATATAATTTATAGAT
1 AAAAT-ATATA-AAAT
*
93800115 AAAATATATGATAAT
1 AAAATATAT-AAAAT
93800130 AAAA
1 AAAA
93800134 AATAATGGAT
Statistics
Matches: 48, Mismatches: 10, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
12 8 0.17
13 3 0.06
14 16 0.33
15 13 0.27
16 8 0.17
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (14 bp):
AAAATATATAAAAT
Found at i:93800137 original size:17 final size:17
Alignment explanation
Indices: 93800115--93800148 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
93800105 ATTTATAGAT
93800115 AAAATATAT-GATAATAA
1 AAAATA-ATGGATAATAA
93800132 AAAATAATGGATAATAA
1 AAAATAATGGATAATAA
93800149 TAGTAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 14 0.88
ACGTcount: A:0.65, C:0.00, G:0.09, T:0.26
Consensus pattern (17 bp):
AAAATAATGGATAATAA
Found at i:93802447 original size:207 final size:206
Alignment explanation
Indices: 93801788--93802546 Score: 1133
Period size: 206 Copynumber: 3.7 Consensus size: 206
93801778 CTGCTTCTTC
* * **
93801788 GATTTGTCCTCTGACAATACAGAGATGCCAAATCATCTTAGGTTTGCTTCAGCATAAGCACGCAA
1 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCATAAGCACGTGA
* * * *
93801853 AAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCCCAAGGATACCAAACCATCTTGGAT
66 AAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGAT
* * * * ** * *
93801918 TTGCTTTAGTCTAATCATCTGAAGGTTAGATCTGTTATGTGTCTGCCCTCCATCGAATATGGAGA
131 CTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCTCTCCATCGAATATGGAGA
* *
93801983 TGCCAAACTTC
196 CGCCAAACTTT
* * * *
93801994 GATTTGTTCTCTGACAATACAGAAAGGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCACGTGA
1 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCATAAGCACGTGA
* * * * *
93802059 AAGCTAAATCAGCTATGAT-TTCGATTTGTTTCTTGTAAACACAAGGATGCCAAATCATTTTGGA
66 AAGCCAAATCAGCTATG-TCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGA
* *
93802123 TCTGATTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAG
130 TCTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCTCTCCATCGAATATGGAG
93802188 ACGCCAAACTTT
195 ACGCCAAACTTT
* *
93802200 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGA
1 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCATAAGCACGTGA
* *
93802265 AAGCCAAATCAGCTATGTCTTCTATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGAT
66 AAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGAT
93802330 CTGCTTCAGTATAAACAATCTGAAGGCCAGATCTGCTATGTGTCTGCTCTCCATCGAATATGGAG
131 CTGCTTCAGTATAAAC-ATCTGAAGGCCAGATCTGCTATGTGTCTGCTCTCCATCGAATATGGAG
* *
93802395 ACGGCAAATTTT
195 ACGCCAAACTTT
* * *
93802407 GATTTGTTCTCTGACAATATAGAGATGTCAAATCATCTTAGATTTGCTTCATCATAAGCACGTGA
1 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCATAAGCACGTGA
*
93802472 AAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGTACAAGGATGCCAAACCATCTTGGAT
66 AAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGAT
93802537 CTTGCTTCAG
131 C-TGCTTCAG
93802547 CCAGATTTGC
Statistics
Matches: 501, Mismatches: 48, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
205 1 0.00
206 309 0.62
207 183 0.37
208 8 0.02
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (206 bp):
GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCATAAGCACGTGA
AAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGAT
CTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCTCTCCATCGAATATGGAGA
CGCCAAACTTT
Found at i:93822923 original size:17 final size:18
Alignment explanation
Indices: 93822901--93822935 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
93822891 TTACATTAAA
93822901 GTGTTTT-AGTGAAAACC
1 GTGTTTTCAGTGAAAACC
*
93822918 GTGTTTTCATTGAAAACC
1 GTGTTTTCAGTGAAAACC
93822936 TTCTTAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (18 bp):
GTGTTTTCAGTGAAAACC
Found at i:93824263 original size:29 final size:29
Alignment explanation
Indices: 93824206--93824307 Score: 127
Period size: 29 Copynumber: 3.6 Consensus size: 29
93824196 TACGTGTATC
* *
93824206 TGGCCCATTAAGCCC-AATCATATTTATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
**
93824234 TGGCCCATTAGGCCTTAATCAC-TTATATA
1 TGGCCCATTAGGCCCAAATCACATT-TATA
* *
93824263 TGACCCATTAGTCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
93824292 TGGCCCATTAGGCCCA
1 TGGCCCATTAGGCCCA
93824308 GTTACATTCA
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
28 15 0.24
29 45 0.73
30 2 0.03
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.30
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTTATA
Found at i:93825245 original size:17 final size:18
Alignment explanation
Indices: 93825223--93825257 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
93825213 TTACATTAAA
93825223 GTGTTTT-AGTGAAAACC
1 GTGTTTTCAGTGAAAACC
*
93825240 GTGTTTTCATTGAAAACC
1 GTGTTTTCAGTGAAAACC
93825258 TTCTTAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (18 bp):
GTGTTTTCAGTGAAAACC
Found at i:93826357 original size:29 final size:29
Alignment explanation
Indices: 93826300--93826401 Score: 127
Period size: 29 Copynumber: 3.6 Consensus size: 29
93826290 TACGTGTATC
* *
93826300 TGGCCCATTAAGCCC-AATCATATTTATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
**
93826328 TGGCCCATTAGGCCTTAATCAC-TTATATA
1 TGGCCCATTAGGCCCAAATCACATT-TATA
* *
93826357 TGACCCATTAGTCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
93826386 TGGCCCATTAGGCCCA
1 TGGCCCATTAGGCCCA
93826402 GTTACATTCA
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
28 15 0.24
29 45 0.73
30 2 0.03
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.30
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTTATA
Found at i:93827847 original size:21 final size:22
Alignment explanation
Indices: 93827805--93827847 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
93827795 AGAGCATAAA
*
93827805 TTACACAATATACATTATTATT
1 TTACACAATATACATTAATATT
93827827 TTACAC-ATATATCA-TAATATT
1 TTACACAATATA-CATTAATATT
93827848 CACGCATCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.42, C:0.14, G:0.00, T:0.44
Consensus pattern (22 bp):
TTACACAATATACATTAATATT
Found at i:93828512 original size:15 final size:15
Alignment explanation
Indices: 93828492--93828551 Score: 68
Period size: 15 Copynumber: 3.9 Consensus size: 15
93828482 TAATATAATT
93828492 AATGATATATATAAA
1 AATGATATATATAAA
93828507 AATGATATATACT-AA
1 AATGATATATA-TAAA
* *
93828522 AATCATATAATATACA
1 AATGATAT-ATATAAA
*
93828538 AATAATATATATAA
1 AATGATATATATAA
93828552 CGAATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
15 26 0.68
16 12 0.32
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.33
Consensus pattern (15 bp):
AATGATATATATAAA
Found at i:93828650 original size:17 final size:17
Alignment explanation
Indices: 93828585--93828652 Score: 52
Period size: 17 Copynumber: 3.9 Consensus size: 17
93828575 AATGTATAGT
93828585 AAAATAAATAATAT-A-
1 AAAATAAATAATATAAC
*
93828600 AAAATACATATAACATATAGC
1 AAAATA-A-AT-A-ATATAAC
*
93828621 AAAAATACA-AATATAAC
1 -AAAATAAATAATATAAC
93828638 AAAATAAATAATATA
1 AAAATAAATAATATA
93828653 TATAATGCAA
Statistics
Matches: 41, Mismatches: 4, Indels: 14
0.69 0.07 0.24
Matches are distributed among these distances:
15 6 0.15
16 8 0.20
17 14 0.34
18 2 0.05
19 4 0.10
20 1 0.02
22 6 0.15
ACGTcount: A:0.68, C:0.07, G:0.01, T:0.24
Consensus pattern (17 bp):
AAAATAAATAATATAAC
Found at i:93832090 original size:40 final size:40
Alignment explanation
Indices: 93832038--93832235 Score: 225
Period size: 40 Copynumber: 4.8 Consensus size: 40
93832028 ATTACCACAA
* * ** *
93832038 GCACAATTGCCTTCGGGTCTTAACCCGGGCATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* * * *
93832078 GCACGAATGCCTTCGGGCCTTAGCCCGGATCGGATATATCAATTT
1 GCACAAATGCCTTCGGGTCTTAG-CC----CGGATATATCAACTC
*
93832123 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGG--ATATATCAACTC
*
93832165 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
93832205 GCACAAATGCCTTCGGGACTTAGCCCGGATA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATA
93832236 AAATTCAAAT
Statistics
Matches: 133, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
40 63 0.47
41 2 0.02
42 36 0.27
44 2 0.02
45 30 0.23
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:93832227 original size:82 final size:84
Alignment explanation
Indices: 93832038--93832235 Score: 242
Period size: 82 Copynumber: 2.4 Consensus size: 84
93832028 ATTACCACAA
* * * *
93832038 GCACAATTGCCTTCGGGTCTTAACCCGG--GCATAGCAACTCGCACGAATGCCTTCGGGCCTTAG
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATACATAGCAACTCGCACAAATGCCTGCGGGCCTTAG
* *
93832101 CCCGGATCGGATATATCAATTT
66 CCC-G--CGGATATATCAACTC
* * *
93832123 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTCGCACAAATGCCTGCGGGTCTTAG
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATACATAGCAACTCGCACAAATGCCTGCGGGCCTTAG
93832188 -CC-CGGATATATCAACTC
66 CCCGCGGATATATCAACTC
* *
93832205 GCACAAATGCCTTCGGGACTTAGCCCGGATA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATA
93832236 AAATTCAAAT
Statistics
Matches: 100, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
82 42 0.42
85 27 0.27
86 2 0.02
87 29 0.29
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (84 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATACATAGCAACTCGCACAAATGCCTGCGGGCCTTAG
CCCGCGGATATATCAACTC
Found at i:93835117 original size:65 final size:65
Alignment explanation
Indices: 93835013--93835143 Score: 253
Period size: 65 Copynumber: 2.0 Consensus size: 65
93835003 ACTCCGAAAA
93835013 TTTTACTTTCACCGAGCTCGGTCCAAAACAATGGTGTACGACATTTACGACCGTACAAAGCCTCG
1 TTTTACTTTCACCGAGCTCGGTCCAAAACAATGGTGTACGACATTTACGACCGTACAAAGCCTCG
*
93835078 TTTTACTTTCACCGAGCTCGGTCCAAAACAATGGTGTACGGCATTTACGACCGTACAAAGCCTCG
1 TTTTACTTTCACCGAGCTCGGTCCAAAACAATGGTGTACGACATTTACGACCGTACAAAGCCTCG
93835143 T
1 T
93835144 AAGGTGCCAT
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (65 bp):
TTTTACTTTCACCGAGCTCGGTCCAAAACAATGGTGTACGACATTTACGACCGTACAAAGCCTCG
Found at i:93840733 original size:40 final size:40
Alignment explanation
Indices: 93840681--93840873 Score: 278
Period size: 40 Copynumber: 4.8 Consensus size: 40
93840671 ATTACCACAA
* * ** *
93840681 GCACAATTGCCTTCGGGTCTTAACCCGGGCATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
93840721 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
93840761 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGG--ATATATCAACTC
*
93840803 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
93840843 GCACAAATGCCTTCGGGACTTAGCCCGGATA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATA
93840874 AAATTCAAAT
Statistics
Matches: 137, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
40 100 0.73
42 37 0.27
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:93840832 original size:82 final size:82
Alignment explanation
Indices: 93840681--93840873 Score: 291
Period size: 82 Copynumber: 2.4 Consensus size: 82
93840671 ATTACCACAA
* * * *
93840681 GCACAATTGCCTTCGGGTCTTAACCCGG--GCATAGCAACTCGCACGAATGCCTTCGGGTCTTAG
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATACATAGCAACTCGCACAAATGCCTGCGGGTCTTAG
*
93840744 CCCGGATATATCAACTT
66 CCCGGATATATCAACTC
* *
93840761 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTCGCACAAATGCCTGCGGGTCTTAG
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATACATAGCAACTCGCACAAATGCCTGCGGGTCTTAG
93840826 CCCGGATATATCAACTC
66 CCCGGATATATCAACTC
* *
93840843 GCACAAATGCCTTCGGGACTTAGCCCGGATA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATA
93840874 AAATTCAAAT
Statistics
Matches: 102, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
80 27 0.26
82 75 0.74
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.24
Consensus pattern (82 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATACATAGCAACTCGCACAAATGCCTGCGGGTCTTAG
CCCGGATATATCAACTC
Found at i:93848976 original size:3 final size:3
Alignment explanation
Indices: 93848968--93849016 Score: 80
Period size: 3 Copynumber: 16.3 Consensus size: 3
93848958 GGAAAACAAG
* *
93848968 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AAA AGA ACA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
93849016 A
1 A
93849017 CAGAGAAGAG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.69, C:0.02, G:0.29, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:93857652 original size:27 final size:27
Alignment explanation
Indices: 93857621--93857771 Score: 164
Period size: 27 Copynumber: 5.6 Consensus size: 27
93857611 TTTAGTTTAC
* *
93857621 AAAATTACTGAAATACCCTCAACTTGT
1 AAAATTACTGAAATACCCTCGATTTGT
* *
93857648 AAAATTAC-CAAAGTACCC-CTGATTTAT
1 AAAATTACTGAAA-TACCCTC-GATTTGT
** *
93857675 AAAATTACCCAAATATCCTCGATTTGT
1 AAAATTACTGAAATACCCTCGATTTGT
* *
93857702 AAAATTACAGAAATACCCTC-AGTTTGC
1 AAAATTACTGAAATACCCTCGA-TTTGT
*
93857729 AAAATTACTGAAATACCTTCGATTTGT
1 AAAATTACTGAAATACCCTCGATTTGT
93857756 AAAATTACTGAAATAC
1 AAAATTACTGAAATAC
93857772 TCCTGTAAGA
Statistics
Matches: 105, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
26 5 0.05
27 94 0.90
28 6 0.06
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTCGATTTGT
Found at i:93857770 original size:81 final size:82
Alignment explanation
Indices: 93857621--93857775 Score: 190
Period size: 81 Copynumber: 1.9 Consensus size: 82
93857611 TTTAGTTTAC
* *
93857621 AAAATTACTGAAATACCCTCAACTTGTAAAATTACCAAAGTACCCCTGATTTATAAAATTACCCA
1 AAAATTACAGAAATACCCTCAACTTGCAAAATTACCAAAGTACCCCTGATTTATAAAATTACCCA
93857686 AATA-TCCTCGATTTGT
66 AATACTCCTCGATTTGT
** * * * *
93857702 AAAATTACAGAAATACCCTCAGTTTGCAAAATTACTGAAA-TA-CCTTCGATTTGTAAAATTACT
1 AAAATTACAGAAATACCCTCAACTTGCAAAATTAC-CAAAGTACCCCT-GATTTATAAAATTACC
*
93857765 GAAATACTCCT
64 CAAATACTCCT
93857776 GTAAGATAGA
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
80 3 0.05
81 52 0.84
82 7 0.11
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (82 bp):
AAAATTACAGAAATACCCTCAACTTGCAAAATTACCAAAGTACCCCTGATTTATAAAATTACCCA
AATACTCCTCGATTTGT
Found at i:93857789 original size:54 final size:50
Alignment explanation
Indices: 93857622--93857790 Score: 126
Period size: 54 Copynumber: 3.1 Consensus size: 50
93857612 TTAGTTTACA
* * * *
93857622 AAATTACTGAAATACCCTCAACTTGTAAAATTACCAAAGTACCCCTG-ATTTAT
1 AAATTACTGAAATA-CCTCGATTTGTAAAATTACGAAA-TA-CCCTGTA-TGAT
** *
93857675 AAAATTACCCAAATATCCTCGATTTGTAAAATTACAGAAATACCCTCAGTTTGCA-
1 -AAATTACTGAAATA-CCTCGATTTGTAAAATTAC-GAAATACCCT--GTATG-AT
*
93857730 AAATTACTGAAATACCTTCGATTTGTAAAATTACTGAAATACTCCTGTAAGAT
1 AAATTACTGAAATACC-TCGATTTGTAAAATTAC-GAAATAC-CCTGTATGAT
93857783 AGAATTAC
1 A-AATTAC
93857791 CATTTTACCC
Statistics
Matches: 93, Mismatches: 13, Indels: 18
0.75 0.10 0.15
Matches are distributed among these distances:
52 1 0.01
53 10 0.11
54 73 0.78
55 8 0.09
56 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (50 bp):
AAATTACTGAAATACCTCGATTTGTAAAATTACGAAATACCCTGTATGAT
Found at i:93857813 original size:27 final size:27
Alignment explanation
Indices: 93857783--93857910 Score: 193
Period size: 27 Copynumber: 4.7 Consensus size: 27
93857773 CCTGTAAGAT
93857783 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* * *
93857810 AGAATTAACATTTTACCCTCAATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
*
93857837 AGAATTACTATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
** *
93857864 AGAATTACTGTCTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
93857891 AGAATTACCATTTTACCCTC
1 AGAATTACCATTTTACCCTC
93857911 AATGTAAAAA
Statistics
Matches: 89, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 89 1.00
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.38
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCGATTTAC
Found at i:93857816 original size:54 final size:54
Alignment explanation
Indices: 93857758--93857937 Score: 138
Period size: 54 Copynumber: 3.3 Consensus size: 54
93857748 CGATTTGTAA
*
93857758 AATTACTGA-AATACTCCTGTAA-GATAGAATTACCATTTTACCCTCGATTTACAG
1 AATTACTGATAATAC-CCT-CAATGATAGAATTACCATTTTACCCTCGATTTACAG
** * *
93857812 AATTAAC--ATTTTACCCTCAATTTATAGAATTACTATTTTACCCTCGATTTACAG
1 AATT-ACTGATAATACCCTCAA-TGATAGAATTACCATTTTACCCTCGATTTACAG
** * * * * * * *
93857866 AATTACTG-TCTTACCCTCGATTTACAGAATTACCATTTTACCCTCAATGTAAAAA
1 AATTACTGATAATACCCTC-AATGATAGAATTACCATTTTACCCTCGAT-TTACAG
93857921 AATTACTGA-AATACCCT
1 AATTACTGATAATACCCT
93857938 TGGTTTACAA
Statistics
Matches: 102, Mismatches: 15, Indels: 17
0.76 0.11 0.13
Matches are distributed among these distances:
52 2 0.02
53 6 0.06
54 74 0.73
55 20 0.20
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.36
Consensus pattern (54 bp):
AATTACTGATAATACCCTCAATGATAGAATTACCATTTTACCCTCGATTTACAG
Found at i:93857843 original size:81 final size:82
Alignment explanation
Indices: 93857756--93857937 Score: 201
Period size: 81 Copynumber: 2.2 Consensus size: 82
93857746 TTCGATTTGT
* *
93857756 AAAATTACTGAAATACTCCT-G-TAAGATAGAATTACCATTTTACCCTCGATTTACAGAATTAAC
1 AAAATTACTGAAATAC-CCTCGAT-AGACAGAATTACCATCTTACCCTCGATTTACAGAATTAAC
* *
93857819 ATTTTACCCTCAAT-TTAT
64 ATTTTACCCTCAATGTAAA
* ** ** ** *
93857837 AGAATTACT-ATTTTACCCTCGATTTACAGAATTACTGTCTTACCCTCGATTTACAGAATTACCA
1 AAAATTACTGA-AATACCCTCGATAGACAGAATTACCATCTTACCCTCGATTTACAGAATTAACA
93857901 TTTTACCCTCAATGTAAA
65 TTTTACCCTCAATGTAAA
93857919 AAAATTACTGAAATACCCT
1 AAAATTACTGAAATACCCT
93857938 TGGTTTACAA
Statistics
Matches: 81, Mismatches: 15, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
80 4 0.05
81 59 0.73
82 17 0.21
83 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.35
Consensus pattern (82 bp):
AAAATTACTGAAATACCCTCGATAGACAGAATTACCATCTTACCCTCGATTTACAGAATTAACAT
TTTACCCTCAATGTAAA
Found at i:93857945 original size:55 final size:54
Alignment explanation
Indices: 93857823--93857955 Score: 140
Period size: 54 Copynumber: 2.4 Consensus size: 54
93857813 ATTAACATTT
* * * * * * * ***
93857823 TACCCTCAATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACTGTCT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCAATTAAAAAAATTACTGAAA
93857877 TACCCTCGATTTACAGAATTACCATTTTACCCTCAATGTAAAAAAATTACTGAAA
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCAAT-TAAAAAAATTACTGAAA
* * *
93857932 TACCCTTGGTTTACAAAATTACCA
1 TACCCTCGATTTACAGAATTACCA
93857956 AAATACCATC
Statistics
Matches: 65, Mismatches: 13, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
54 33 0.51
55 32 0.49
ACGTcount: A:0.35, C:0.23, G:0.08, T:0.35
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTCAATTAAAAAAATTACTGAAA
Found at i:93857959 original size:27 final size:27
Alignment explanation
Indices: 93857919--93858016 Score: 106
Period size: 27 Copynumber: 3.6 Consensus size: 27
93857909 TCAATGTAAA
** * *
93857919 AAAATTACTGAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCATTGGTTTAT
* * **
93857946 AAAATTACCAAAATACCATCGATCAAT
1 AAAATTACCAAAATACCATTGGTTTAT
* *
93857973 AAAATTACCAAAATGCCATTGGTTTGT
1 AAAATTACCAAAATACCATTGGTTTAT
93858000 AAAATTACCAAAATACC
1 AAAATTACCAAAATACC
93858017 CCTGCTTTGT
Statistics
Matches: 56, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.45, C:0.19, G:0.08, T:0.28
Consensus pattern (27 bp):
AAAATTACCAAAATACCATTGGTTTAT
Found at i:93858025 original size:27 final size:27
Alignment explanation
Indices: 93857972--93858044 Score: 83
Period size: 27 Copynumber: 2.7 Consensus size: 27
93857962 CATCGATCAA
* ** *
93857972 TAAAATTACCAAAATGCCATTGGTTTG
1 TAAAATTACCAAAATACCCCTGCTTTG
93857999 TAAAATTACCAAAATACCCCTGCTTTG
1 TAAAATTACCAAAATACCCCTGCTTTG
** *
93858026 TGTAATTACCGAAATACCC
1 TAAAATTACCAAAATACCC
93858045 TTGTAGGGTA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.37, C:0.22, G:0.11, T:0.30
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCCTGCTTTG
Found at i:93858059 original size:27 final size:27
Alignment explanation
Indices: 93858029--93858386 Score: 518
Period size: 27 Copynumber: 13.3 Consensus size: 27
93858019 TGCTTTGTGT
93858029 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
93858056 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
93858083 AATGACCGAACTACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
93858110 AAATACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
93858137 AATTACCGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
93858164 AATTACTGAAATACCCTTGTAGTGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
93858191 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
93858218 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
93858245 AATAACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
93858272 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
93858299 AATGACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
93858326 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
93858353 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
93858380 AATTACC
1 AATTACC
93858387 ATTTTGCCCC
Statistics
Matches: 298, Mismatches: 33, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 298 1.00
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:93858821 original size:25 final size:25
Alignment explanation
Indices: 93858791--93858886 Score: 93
Period size: 25 Copynumber: 3.6 Consensus size: 25
93858781 CATTCACATT
*
93858791 CTGATTTTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTGATA
*
93858816 CCGATTCTGACTTTGATTCTGTTACCTGATA
1 CTGA-T-T--C--TGATTCTGTTACCTGATA
* * *
93858847 CTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTGTTACCTGATA
93858872 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
93858887 ATTCTAGTTC
Statistics
Matches: 59, Mismatches: 6, Indels: 12
0.77 0.08 0.16
Matches are distributed among these distances:
25 33 0.56
26 1 0.02
27 2 0.03
29 1 0.02
30 1 0.02
31 21 0.36
ACGTcount: A:0.19, C:0.21, G:0.16, T:0.45
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTGATA
Found at i:93858831 original size:31 final size:31
Alignment explanation
Indices: 93858788--93858856 Score: 120
Period size: 31 Copynumber: 2.2 Consensus size: 31
93858778 TTGCATTCAC
*
93858788 ATTCTGATTTTGATTCTGTTACCTGATACCG
1 ATTCTGACTTTGATTCTGTTACCTGATACCG
*
93858819 ATTCTGACTTTGATTCTGTTACCTGATACTG
1 ATTCTGACTTTGATTCTGTTACCTGATACCG
93858850 ATTCTGA
1 ATTCTGA
93858857 TTCTGTCACC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.20, C:0.19, G:0.16, T:0.45
Consensus pattern (31 bp):
ATTCTGACTTTGATTCTGTTACCTGATACCG
Found at i:93858851 original size:19 final size:19
Alignment explanation
Indices: 93858798--93858855 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
93858788 ATTCTGATTT
93858798 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
*
93858817 CGATTCTG--A-CT--T--
1 TGATTCTGTTACCTGATAC
93858829 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
93858848 TGATTCTG
1 TGATTCTG
93858856 ATTCTGTCAC
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 7 0.23
14 2 0.07
15 2 0.07
16 2 0.07
17 2 0.07
19 15 0.50
ACGTcount: A:0.19, C:0.21, G:0.17, T:0.43
Consensus pattern (19 bp):
TGATTCTGTTACCTGATAC
Found at i:93858856 original size:6 final size:6
Alignment explanation
Indices: 93858788--93858900 Score: 65
Period size: 6 Copynumber: 18.3 Consensus size: 6
93858778 TTGCATTCAC
* * *
93858788 ATTCTG ATTTTG ATTCTG -TTACCTG ATACCG ATTCTG ACTT-TG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG A-TTCTG ATTCTG
* * *
93858837 -TTACCTG ATACTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
93858887 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
93858901 AATGTTTCTT
Statistics
Matches: 82, Mismatches: 12, Indels: 26
0.68 0.10 0.22
Matches are distributed among these distances:
5 8 0.10
6 60 0.73
7 11 0.13
8 3 0.04
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.46
Consensus pattern (6 bp):
ATTCTG
Found at i:93861834 original size:25 final size:25
Alignment explanation
Indices: 93861810--93861897 Score: 83
Period size: 25 Copynumber: 3.6 Consensus size: 25
93861800 GTACATGTAT
*
93861810 GCTCATACGAGCTATGAATCGGTAT
1 GCTCATACGAGCTATGAATCGGTAA
* * *
93861835 GCTC-TCATGAGCTATAAATTGGTAA
1 GCTCAT-ACGAGCTATGAATCGGTAA
*
93861860 GCTCATACAAGC--TGAAATCGGTAA
1 GCTCATACGAGCTATG-AATCGGTAA
*
93861884 GCTCATATGAGCTA
1 GCTCATACGAGCTA
93861898 AAATCAGTAA
Statistics
Matches: 48, Mismatches: 10, Indels: 9
0.72 0.15 0.13
Matches are distributed among these distances:
23 1 0.02
24 19 0.40
25 27 0.56
26 1 0.02
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (25 bp):
GCTCATACGAGCTATGAATCGGTAA
Found at i:93861896 original size:24 final size:24
Alignment explanation
Indices: 93861810--93861907 Score: 90
Period size: 24 Copynumber: 4.0 Consensus size: 24
93861800 GTACATGTAT
* * *
93861810 GCTCATACGAGCTATGAATCGGTAT
1 GCTCATATGAGCTA-AAATCGGTAA
*
93861835 GCTC-TCATGAGCTATAAATTGGTAA
1 GCTCAT-ATGAGCTA-AAATCGGTAA
** *
93861860 GCTCATACAAGCTGAAATCGGTAA
1 GCTCATATGAGCTAAAATCGGTAA
*
93861884 GCTCATATGAGCTAAAATCAGTAA
1 GCTCATATGAGCTAAAATCGGTAA
93861908 TCCCTAATGA
Statistics
Matches: 59, Mismatches: 12, Indels: 5
0.78 0.16 0.07
Matches are distributed among these distances:
24 30 0.51
25 28 0.47
26 1 0.02
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (24 bp):
GCTCATATGAGCTAAAATCGGTAA
Found at i:93862979 original size:27 final size:27
Alignment explanation
Indices: 93862944--93863055 Score: 131
Period size: 27 Copynumber: 4.1 Consensus size: 27
93862934 AGCATGGCTG
* *
93862944 CCAGA-ACAGATAATGTGACAGAGTCA
1 CCAGATACAGATAATGTGGCAGAGCCA
93862970 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
* *
93862998 CCA-AAACAGAAATATGTGGCAGAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
*
93863025 CCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGATACAGATAA-TGTGGCAGAGCCA
93863052 CCAG
1 CCAG
93863056 GAAGCTTCCT
Statistics
Matches: 74, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
26 6 0.08
27 52 0.70
28 16 0.22
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.15
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:93863044 original size:54 final size:54
Alignment explanation
Indices: 93862948--93863054 Score: 153
Period size: 54 Copynumber: 2.0 Consensus size: 54
93862938 TGGCTGCCAG
* *
93862948 AACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCACCAA
1 AACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACCAA
* * *
93863002 AACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCA
1 AACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACCA
93863055 GGAAGCTTCC
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
54 29 0.62
55 18 0.38
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.16
Consensus pattern (54 bp):
AACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACCAA
Found at i:93866004 original size:20 final size:19
Alignment explanation
Indices: 93865968--93866006 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
93865958 AACTGCTCCA
**
93865968 TTGAAAAGTATTGATACCT
1 TTGAAAAGTATCAATACCT
93865987 TTGATAAAGTATCAATACCT
1 TTGA-AAAGTATCAATACCT
93866007 ATTGTATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (19 bp):
TTGAAAAGTATCAATACCT
Found at i:93869102 original size:47 final size:45
Alignment explanation
Indices: 93869047--93869317 Score: 251
Period size: 47 Copynumber: 5.8 Consensus size: 45
93869037 GGGTAAGGTT
93869047 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCATATCTCAAG
* * *
93869094 TCGATGCCATGTCCCAAACATGGTCTTACACTGACT-ATCATCTCATAG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCAT-ATCTCA-AG
* * ** * *
93869142 CAGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCACGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCTCATATCTC-AAG
* * *
93869188 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCTTGTCTCAATG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCTCATATCTCAA-G
* * * *
93869234 CCGATGCCATGTCCCAGAAATGGTCTTACACTAGCTCTCATAATGT--GG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACT-G-GCTCAT-ATCTCAAG
*
93869282 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCA
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCTCA
93869318 CACACAAATG
Statistics
Matches: 186, Mismatches: 28, Indels: 23
0.78 0.12 0.10
Matches are distributed among these distances:
44 4 0.02
45 1 0.01
46 72 0.39
47 80 0.43
48 23 0.12
50 4 0.02
51 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (45 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGGCTCATATCTCAAG
Found at i:93869294 original size:94 final size:92
Alignment explanation
Indices: 93869047--93869316 Score: 282
Period size: 94 Copynumber: 2.9 Consensus size: 92
93869037 GGGTAAGGTT
* * * * *
93869047 CCGATGCCATGTCCCAGACATGGTCTTACACTG-GCTCATATCTCAAGTCGATGCCATGTCCCAA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGCTCTCATATGT--GGCCGATG-CATGTCCCAG
*
93869111 ACATGGTCTTACACT-GACTATCATCTCATAG
63 ACAT-GTCTTACACTAG-CTCTCATCTCATAG
* * * *
93869142 CAGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACGTCACGAGGCCGATGCATGTCCCAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACT-GCTCT-CAT-ATGTGGCCGATGCATGTCCCAG
**
93869204 ACATGTCTTACACTAGCTCTTGTCTCA-ATG
63 ACATGTCTTACACTAGCTCTCATCTCATA-G
*
93869234 CCGATGCCATGTCCCAGAAATGGTCTTACACTAGCTCTCATAATGTGGCCGATGCATGTCCCAGA
1 CCGATGCCATGTCCCAGACATGGTCTTACACT-GCTCTCAT-ATGTGGCCGATGCATGTCCCAGA
93869299 CATGTCTTACACTAGCTC
64 CATGTCTTACACTAGCTC
93869317 ACACACAAAT
Statistics
Matches: 147, Mismatches: 19, Indels: 19
0.79 0.10 0.10
Matches are distributed among these distances:
91 1 0.01
92 24 0.16
93 37 0.25
94 76 0.52
95 8 0.05
96 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (92 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGCTCTCATATGTGGCCGATGCATGTCCCAGACA
TGTCTTACACTAGCTCTCATCTCATAG
Found at i:93869306 original size:140 final size:141
Alignment explanation
Indices: 93869047--93869311 Score: 378
Period size: 140 Copynumber: 1.9 Consensus size: 141
93869037 GGGTAAGGTT
* *
93869047 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCCAAA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAAGCCGATGCCATGTCCCAAA
*
93869112 CATGGTCTTACACTGACTATCATCTCATAGCAGATGCATGTCCCAGACATGTCTTACACTGGCTT
66 CATGGTCTTACACTGACTATCATATCATAGCAGATGCATGTCCCAGACATGTCTTACACTGGCTT
93869177 ACGTCACGAGG
131 ACGTCACGAGG
* *
93869188 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTTGTCTCAATGCCGATGCCATGTCCCAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAA-GCCGATGCCATGTCCCA-
* * * *
93869251 AA-ATGGTCTTACACT-AGCTCTCATAAT-GTGGCCGATGCATGTCCCAGACATGTCTTACACT
64 AACATGGTCTTACACTGA-CTATCAT-ATCATAGCAGATGCATGTCCCAGACATGTCTTACACT
93869312 AGCTCACACA
Statistics
Matches: 111, Mismatches: 9, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
139 22 0.20
140 80 0.72
141 9 0.08
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (141 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAAGCCGATGCCATGTCCCAAA
CATGGTCTTACACTGACTATCATATCATAGCAGATGCATGTCCCAGACATGTCTTACACTGGCTT
ACGTCACGAGG
Found at i:93873841 original size:34 final size:34
Alignment explanation
Indices: 93873803--93873873 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
93873793 AGTCCAATGT
93873803 ACTGTTAGTCTAGTCAGACACATCTACTTCACTA
1 ACTGTTAGTCTAGTCAGACACATCTACTTCACTA
93873837 ACTGTTAGTCTAGTCAGACACATCTACTTCACTA
1 ACTGTTAGTCTAGTCAGACACATCTACTTCACTA
93873871 ACT
1 ACT
93873874 TTTGGAGTCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.30, C:0.27, G:0.11, T:0.32
Consensus pattern (34 bp):
ACTGTTAGTCTAGTCAGACACATCTACTTCACTA
Found at i:93876266 original size:49 final size:49
Alignment explanation
Indices: 93876194--93876380 Score: 207
Period size: 50 Copynumber: 3.8 Consensus size: 49
93876184 GCTGAAGCTA
* * *
93876194 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAACAG
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACAG
* *
93876243 TCTGGTACATGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAACAG
** * *
93876293 TCTAATACACGTAGTAGCCTGCACGTAGTACTACACACGTGATC-ACAG
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACAG
* * *
93876341 TTTTCAGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 ---TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
93876381 TGCCACCTCA
Statistics
Matches: 115, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
49 38 0.33
50 39 0.34
51 35 0.30
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (49 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACAG
Found at i:93876389 original size:101 final size:99
Alignment explanation
Indices: 93876205--93876391 Score: 250
Period size: 101 Copynumber: 1.9 Consensus size: 99
93876195 CTGGTACGCA
* * * **
93876205 TAGTAGCCTGCACTTAGTACTACACATGTGACCAACAGTCTGGTACATGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACGTAGTACTACACACGTGACCAACAGTCAGGTACACATAGTAGCCTGCACTTA
**
93876270 GTACTACACACGTGACCTCACCATCTAATACACG
66 GTACTACACACGCCACCTCACCATCTAATACACG
* *
93876304 TAGTAGCCTGCACGTAGTACTACACACGTGATC-ACAGTTTTCAGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACGTAGTACTACACACGTGACCAACAG---TCAGGTACACATAGTAGCCTGCAC
*
93876368 TTAGTACTACACATGCCACCTCAC
63 TTAGTACTACACACGCCACCTCAC
93876392 AATAGATCAT
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
98 4 0.05
99 30 0.40
101 41 0.55
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACGTAGTACTACACACGTGACCAACAGTCAGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCCACCTCACCATCTAATACACG
Found at i:93881062 original size:51 final size:51
Alignment explanation
Indices: 93880979--93881173 Score: 275
Period size: 51 Copynumber: 3.8 Consensus size: 51
93880969 TACACGGTGA
* *
93880979 CCTTCACATAGTACTACCCTTGTAG-CCAAAGCTATTTTATTCACAAAGTGG
1 CCTTCACATAGTACCACACTTGT-GTCCAAAGCTATTTTATTCACAAAGTGG
* * *
93881030 CTTTCATATAGTACCACACTTGTGTCCAAAGCTATTTTATTCATAAAGTGG
1 CCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAGTGG
* * * * *
93881081 CCTTCACATAGTACCACACTTATGTCTACAGCTATTATATTCACAAAGTTG
1 CCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAGTGG
*
93881132 CCATCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTC
1 CCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTC
93881174 CTAAGGTTCA
Statistics
Matches: 125, Mismatches: 18, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
50 1 0.01
51 124 0.99
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.34
Consensus pattern (51 bp):
CCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAGTGG
Found at i:93881246 original size:24 final size:24
Alignment explanation
Indices: 93881209--93881308 Score: 128
Period size: 24 Copynumber: 4.0 Consensus size: 24
93881199 ACTTAGCACC
93881209 ATGCCATGGACTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAG
* *
93881233 ATGCCATAGTCTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAG
*
93881257 CACATTGCCATGGACTTATTTCACTTTG
1 ---A-TGCCATGGACTTATTTCACTTAG
*
93881285 ATGCCATGGTCTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAG
93881309 CGCAATGTCG
Statistics
Matches: 65, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
24 43 0.66
25 1 0.02
27 1 0.02
28 20 0.31
ACGTcount: A:0.23, C:0.22, G:0.15, T:0.40
Consensus pattern (24 bp):
ATGCCATGGACTTATTTCACTTAG
Found at i:93881253 original size:52 final size:52
Alignment explanation
Indices: 93881197--93881309 Score: 192
Period size: 52 Copynumber: 2.2 Consensus size: 52
93881187 CAGAAATTTC
93881197 TCACTTAGCACCA-TGCCATGGACTTATTTCACTTAGATGCCATAGTCTTATT
1 TCACTTAGCA-CATTGCCATGGACTTATTTCACTTAGATGCCATAGTCTTATT
* *
93881249 TCACTTAGCACATTGCCATGGACTTATTTCACTTTGATGCCATGGTCTTATT
1 TCACTTAGCACATTGCCATGGACTTATTTCACTTAGATGCCATAGTCTTATT
93881301 TCACTTAGC
1 TCACTTAGC
93881310 GCAATGTCGT
Statistics
Matches: 58, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
51 2 0.03
52 56 0.97
ACGTcount: A:0.23, C:0.25, G:0.14, T:0.38
Consensus pattern (52 bp):
TCACTTAGCACATTGCCATGGACTTATTTCACTTAGATGCCATAGTCTTATT
Found at i:93882838 original size:46 final size:46
Alignment explanation
Indices: 93882788--93882963 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
93882778 TGGTTGAGCA
93882788 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
93882834 TCCGAACTTGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
93882879 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
93882927 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
93882964 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:93882944 original size:93 final size:93
Alignment explanation
Indices: 93882785--93882956 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
93882775 GGATGGTTGA
* * *
93882785 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
93882850 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
93882878 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
93882943 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
93882957 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:93894806 original size:35 final size:35
Alignment explanation
Indices: 93894760--93894829 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
93894750 CATTATACCA
*
93894760 TTTGAGTTTGAATTTTCACTATCCATACCTCTTCC
1 TTTGAGTTTGAACTTTCACTATCCATACCTCTTCC
*
93894795 TTTGAGTTTGAACTTTCACTATCCATACCTTTTCC
1 TTTGAGTTTGAACTTTCACTATCCATACCTCTTCC
93894830 GATAGCAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.20, C:0.26, G:0.09, T:0.46
Consensus pattern (35 bp):
TTTGAGTTTGAACTTTCACTATCCATACCTCTTCC
Found at i:93897654 original size:51 final size:51
Alignment explanation
Indices: 93897570--93897765 Score: 295
Period size: 51 Copynumber: 3.8 Consensus size: 51
93897560 CGAATACACG
* *
93897570 GTGGACTTCACATAGTACCACCCTTGTAG-CCAAAGCTATTTTATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGT-GTCCAAAGCTATTTTATTCACAAA
* *
93897621 GTGGCCTTCACATAATACCACACTTGTGTCCAAAGCTATTTTATTCATAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
* *
93897672 GTGGCCTTCACTTAGTACCACACTTGTGTCCAAAGCTATTATATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
* * *
93897723 GTTGCTTTCACATAGTAACACACTTGTGTCCAAAGCTATTTTA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTA
93897766 CTCCTAAGGT
Statistics
Matches: 131, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
50 1 0.01
51 130 0.99
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.33
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
Found at i:93897842 original size:24 final size:24
Alignment explanation
Indices: 93897807--93897955 Score: 154
Period size: 24 Copynumber: 5.9 Consensus size: 24
93897797 TAGCACCATC
*
93897807 CCATTGACTTATTTCACTTAGATG
1 CCATGGACTTATTTCACTTAGATG
*
93897831 CCATGGAATTATTTCACTTAGCACATTG
1 CCATGGACTTATTTCACTTAG---A-TG
*
93897859 CCATGGACTTATTCCACTTAGATG
1 CCATGGACTTATTTCACTTAGATG
* *
93897883 TCATGGTCTTATTTCACTTAGCACATTG
1 CCATGGACTTATTTCACTTAG---A-TG
*
93897911 CCATGGACTCATTTCACTTAGATG
1 CCATGGACTTATTTCACTTAGATG
* *
93897935 CCTTGGTCTTATTTCACTTAG
1 CCATGGACTTATTTCACTTAG
93897956 CACAATGCCA
Statistics
Matches: 104, Mismatches: 13, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
24 59 0.57
25 2 0.02
27 2 0.02
28 41 0.39
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.39
Consensus pattern (24 bp):
CCATGGACTTATTTCACTTAGATG
Found at i:93897854 original size:52 final size:52
Alignment explanation
Indices: 93897792--93897966 Score: 253
Period size: 52 Copynumber: 3.4 Consensus size: 52
93897782 GGGAAATTGC
* * **
93897792 TCACTTAGCACCA-TCCCATTGACTTATTTCACTTAGATGCCATGGAATTATT
1 TCACTTAGCA-CATTGCCATGGACTTATTTCACTTAGATGCCATGGTCTTATT
* *
93897844 TCACTTAGCACATTGCCATGGACTTATTCCACTTAGATGTCATGGTCTTATT
1 TCACTTAGCACATTGCCATGGACTTATTTCACTTAGATGCCATGGTCTTATT
* *
93897896 TCACTTAGCACATTGCCATGGACTCATTTCACTTAGATGCCTTGGTCTTATT
1 TCACTTAGCACATTGCCATGGACTTATTTCACTTAGATGCCATGGTCTTATT
*
93897948 TCACTTAGCACAATGCCAT
1 TCACTTAGCACATTGCCAT
93897967 ATCCTAGATA
Statistics
Matches: 111, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
51 2 0.02
52 109 0.98
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.37
Consensus pattern (52 bp):
TCACTTAGCACATTGCCATGGACTTATTTCACTTAGATGCCATGGTCTTATT
Found at i:93911953 original size:27 final size:26
Alignment explanation
Indices: 93911895--93912002 Score: 126
Period size: 27 Copynumber: 4.0 Consensus size: 26
93911885 TGGCTGCCAA
* *
93911895 AACAGATAATGTGACAGAGTCACCAG
1 AACAGATAATGTGGCAGAGCCACCAG
*
93911921 ATACAGATAATCGTGTCAGAGCCACCAG
1 A-ACAGATAAT-GTGGCAGAGCCACCAG
*
93911949 AACAGATATATGTGGCAGAGTCACCAG
1 AACAGATA-ATGTGGCAGAGCCACCAG
* *
93911976 ATCAGATAATTGTGGCATAGCCACCAG
1 AACAGATAA-TGTGGCAGAGCCACCAG
93912003 GATGCTTCCT
Statistics
Matches: 71, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 2 0.03
27 52 0.73
28 17 0.24
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (26 bp):
AACAGATAATGTGGCAGAGCCACCAG
Found at i:93911985 original size:54 final size:54
Alignment explanation
Indices: 93911895--93912002 Score: 164
Period size: 54 Copynumber: 2.0 Consensus size: 54
93911885 TGGCTGCCAA
*
93911895 AACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGTCAGAGCCACCAG
1 AACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCACCAG
* * *
93911949 AACAGATATATGTGGCAGAGTCACCAGAT-CAGATAATTGTGGCATAGCCACCAG
1 AACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCACCAG
93912003 GATGCTTCCT
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
54 30 0.61
55 19 0.39
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (54 bp):
AACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCACCAG
Found at i:93912150 original size:26 final size:27
Alignment explanation
Indices: 93912108--93912183 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 27
93912098 AAAGTAACCC
** *
93912108 TAGGGGTATA-CTGGTAATTTTACACA
1 TAGGGGTATATCAAGTAATTTCACACA
* *
93912134 TAGGGGTATATC-AGTAACTTCCATACA
1 TAGGGGTATATCAAGTAA-TTTCACACA
93912161 TAGGGGTAT-TCAAGTAATTTCAC
1 TAGGGGTATATCAAGTAATTTCAC
93912184 TATTCTTAAG
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
26 20 0.49
27 21 0.51
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.33
Consensus pattern (27 bp):
TAGGGGTATATCAAGTAATTTCACACA
Found at i:93915066 original size:38 final size:37
Alignment explanation
Indices: 93915018--93915092 Score: 132
Period size: 38 Copynumber: 2.0 Consensus size: 37
93915008 AATTGATGCT
93915018 CAGCTTTCACTTGCTGGCACGTCAGACATTTCCCTAC
1 CAGCTTTCACTTGCTGGCACGTCAGACATTTCCCTAC
*
93915055 NCAGCTTTCACTTGCTGGCATGTCAGACATTTCCCTAC
1 -CAGCTTTCACTTGCTGGCACGTCAGACATTTCCCTAC
93915093 AAACTCTGTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.19, C:0.33, G:0.16, T:0.31
Consensus pattern (37 bp):
CAGCTTTCACTTGCTGGCACGTCAGACATTTCCCTAC
Found at i:93920789 original size:40 final size:40
Alignment explanation
Indices: 93920737--93921646 Score: 1739
Period size: 40 Copynumber: 22.8 Consensus size: 40
93920727 ATAACCACAA
* * * * *
93920737 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
* *
93920777 GCACGAATGCCTTCGGGTCTTAGCCAGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
* *
93920817 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
93920857 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
93920897 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
93920937 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
93920977 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
93921017 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
93921057 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
93921097 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
93921137 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
93921177 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
93921217 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
93921257 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
93921297 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
93921337 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
93921377 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
93921417 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
93921457 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
93921497 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
93921537 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
93921577 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
93921617 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
93921647 GTATTCAAAT
Statistics
Matches: 857, Mismatches: 13, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 857 1.00
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
Found at i:93923920 original size:27 final size:26
Alignment explanation
Indices: 93923883--93923994 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
93923873 AGCATGGCTG
* *
93923883 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
93923909 CCAGATACAGATAATCGTGGTAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
93923937 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
93923964 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
93923991 CCAG
1 CCAG
93923995 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 54 0.71
28 16 0.21
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:93923974 original size:54 final size:54
Alignment explanation
Indices: 93923883--93923994 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
93923873 AGCATGGCTG
* *
93923883 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGTAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
93923937 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
93923991 CCAG
1 CCAG
93923995 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:93926958 original size:21 final size:21
Alignment explanation
Indices: 93926904--93926958 Score: 60
Period size: 23 Copynumber: 2.6 Consensus size: 21
93926894 TAATGCAACT
*
93926904 TTATA-TTATGAATTTTTTAT
1 TTATAGTTATGAATTTTTTAC
93926924 TTGAT-GTTGCATGAATTTTTTAC
1 TT-ATAGTT--ATGAATTTTTTAC
93926947 TTATAGTTATGA
1 TTATAGTTATGA
93926959 GTACGTTCGA
Statistics
Matches: 29, Mismatches: 1, Indels: 9
0.74 0.03 0.23
Matches are distributed among these distances:
20 2 0.07
21 8 0.28
22 2 0.07
23 17 0.59
ACGTcount: A:0.27, C:0.04, G:0.13, T:0.56
Consensus pattern (21 bp):
TTATAGTTATGAATTTTTTAC
Found at i:93927141 original size:42 final size:42
Alignment explanation
Indices: 93927056--93927157 Score: 134
Period size: 42 Copynumber: 2.4 Consensus size: 42
93927046 TGCAATTTTT
* **
93927056 TGTAAGACCATATCTGGGATATGGCATCGATACTAGATTTCG
1 TGTAAGACCATATCTGGGACATGGCATCGATACTAGACATCG
* *
93927098 TGTAACACCATGTCTGGGACATGGCATCGATAC-AGGACATCG
1 TGTAAGACCATATCTGGGACATGGCATCGATACTA-GACATCG
*
93927140 TGTAAGACCATAGCTGGG
1 TGTAAGACCATATCTGGG
93927158 CTATCGACAT
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
41 1 0.02
42 50 0.98
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.25
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGACATGGCATCGATACTAGACATCG
Found at i:93927457 original size:3 final size:3
Alignment explanation
Indices: 93927442--93927472 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
93927432 ATAATTTGGA
*
93927442 TAT TAT CAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
93927473 TTGGTATGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:93929231 original size:27 final size:27
Alignment explanation
Indices: 93929201--93929262 Score: 92
Period size: 26 Copynumber: 2.3 Consensus size: 27
93929191 ATTTACAAAA
93929201 ATACCCCTAAGTATG-AAAATTACCATT
1 ATACCCCTAAG-ATGCAAAATTACCATT
*
93929228 ATACCCCT-AGGTGCAAAATTACCATT
1 ATACCCCTAAGATGCAAAATTACCATT
93929254 ATACCCCTA
1 ATACCCCTA
93929263 GGGTTAGTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
25 2 0.06
26 22 0.69
27 8 0.25
ACGTcount: A:0.37, C:0.27, G:0.08, T:0.27
Consensus pattern (27 bp):
ATACCCCTAAGATGCAAAATTACCATT
Found at i:93929413 original size:27 final size:27
Alignment explanation
Indices: 93929372--93929480 Score: 141
Period size: 27 Copynumber: 4.0 Consensus size: 27
93929362 AAGCATTCTA
*
93929372 GTGGCTCTGCTACAATTATCTG-ATCTG
1 GTGGCTCTGCCACAA-TATCTGTATCTG
*
93929399 GTGGCTCTGCCACAAATATCTGTTTCTG
1 GTGGCTCTGCCAC-AATATCTGTATCTG
*
93929427 GTGGCTCTACCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTATCTG
* *
93929454 GTGACTCTGTCACAATATCTGT-TCTG
1 GTGGCTCTGCCACAATATCTGTATCTG
93929480 G
1 G
93929481 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.07
27 50 0.68
28 18 0.25
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTATCTG
Found at i:93929456 original size:55 final size:53
Alignment explanation
Indices: 93929367--93929480 Score: 149
Period size: 55 Copynumber: 2.1 Consensus size: 53
93929357 GGAGGAAGCA
* * * *
93929367 TTCTAGTGGCTCTGCTACAATTATCTGATCTGGTGGCTCTGCCACAAATATCTG
1 TTCTGGTGGCTCTACCACAATTATCTGATCTGGTGACTCTGCCAC-AATATCTG
*
93929421 TTTCTGGTGGCTCTACCACAA-TATCTGTATCTGGTGACTCTGTCACAATATCTG
1 -TTCTGGTGGCTCTACCACAATTATCTG-ATCTGGTGACTCTGCCACAATATCTG
93929475 TTCTGG
1 TTCTGG
93929481 CAGCCATGCT
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
53 6 0.11
54 14 0.26
55 33 0.62
ACGTcount: A:0.19, C:0.24, G:0.20, T:0.37
Consensus pattern (53 bp):
TTCTGGTGGCTCTACCACAATTATCTGATCTGGTGACTCTGCCACAATATCTG
Found at i:93933203 original size:27 final size:27
Alignment explanation
Indices: 93933173--93933234 Score: 83
Period size: 26 Copynumber: 2.3 Consensus size: 27
93933163 ATTTACAAAA
93933173 ATACCCCTAAGTATG-AAAATTACCATT
1 ATACCCCTAAG-ATGCAAAATTACCATT
*
93933200 ATACCCCT-AGGTGCAAAATTACCATT
1 ATACCCCTAAGATGCAAAATTACCATT
*
93933226 ACACCCCTA
1 ATACCCCTA
93933235 GAGTTAGTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 2 0.06
26 21 0.68
27 8 0.26
ACGTcount: A:0.37, C:0.29, G:0.08, T:0.26
Consensus pattern (27 bp):
ATACCCCTAAGATGCAAAATTACCATT
Found at i:93933383 original size:27 final size:27
Alignment explanation
Indices: 93933340--93933479 Score: 158
Period size: 27 Copynumber: 5.2 Consensus size: 27
93933330 GAGGAAGCGT
93933340 TCTGGTGGCTCTGCCACAATTATCTG-A
1 TCTGGTGGCTCTGCCACAA-TATCTGTA
* * * *
93933367 TATGGTGGCTCTACCACAAATATTTGTT
1 TCTGGTGGCTCTGCCAC-AATATCTGTA
*
93933395 TCTGGTGGCTCTGCCACAATATTTGTA
1 TCTGGTGGCTCTGCCACAATATCTGTA
* **
93933422 TCTGGTGACTCTATCACAATATCTGTA
1 TCTGGTGGCTCTGCCACAATATCTGTA
* *
93933449 TCTGGTGACTCTGTCACAATATCTGT-
1 TCTGGTGGCTCTGCCACAATATCTGTA
93933475 TCTGG
1 TCTGG
93933480 CAGCCATGCT
Statistics
Matches: 99, Mismatches: 12, Indels: 5
0.85 0.10 0.04
Matches are distributed among these distances:
26 5 0.05
27 77 0.78
28 17 0.17
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.37
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAATATCTGTA
Found at i:93933403 original size:55 final size:54
Alignment explanation
Indices: 93933339--93933474 Score: 175
Period size: 54 Copynumber: 2.5 Consensus size: 54
93933329 GGAGGAAGCG
* *
93933339 TTCTGGTGGCTCTGCCACAATTATCTG-ATATGGTGGCTCTACCACAAATATTTGT
1 TTCTGGTGGCTCTGCCACAA-TATCTGTATATGGTGACTCTACCAC-AATATCTGT
* * *
93933394 TTCTGGTGGCTCTGCCACAATATTTGTATCTGGTGACTCTATCACAATATCTGT
1 TTCTGGTGGCTCTGCCACAATATCTGTATATGGTGACTCTACCACAATATCTGT
* * *
93933448 ATCTGGTGACTCTGTCACAATATCTGT
1 TTCTGGTGGCTCTGCCACAATATCTGT
93933475 TCTGGCAGCC
Statistics
Matches: 71, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
54 36 0.51
55 35 0.49
ACGTcount: A:0.21, C:0.22, G:0.19, T:0.38
Consensus pattern (54 bp):
TTCTGGTGGCTCTGCCACAATATCTGTATATGGTGACTCTACCACAATATCTGT
Found at i:93937030 original size:42 final size:43
Alignment explanation
Indices: 93936921--93937092 Score: 113
Period size: 42 Copynumber: 4.0 Consensus size: 43
93936911 AAAGCTCATA
* *
93936921 CAATGCCA-ACATCCCAAACTTGGTCTTACACG-TATCAAATAT
1 CAATGCCATA-ATCCCAAACATGGTCTTACACGAAATCAAATAT
* * *
93936963 CAATGCCATAATCTCAGACAGGGTCTTACACGAAATCAAATA-
1 CAATGCCATAATCCCAAACATGGTCTTACACGAAATCAAATAT
* * * * *
93937005 CTATGTCGAT-GTCCCAAACATGGTCTTACATGTAAATCATAA-GT
1 CAATG-CCATAATCCCAAACATGGTCTTACACG-AAATCA-AATAT
* * * * * *
93937049 CGATGCCA-ACATCCCAGACGTGGTTTTACACGAAAACACATAT
1 CAATGCCATA-ATCCCAAACATGGTCTTACACGAAATCAAATAT
93937092 C
1 C
93937093 GGATCCTATG
Statistics
Matches: 98, Mismatches: 23, Indels: 17
0.71 0.17 0.12
Matches are distributed among these distances:
42 48 0.49
43 27 0.28
44 23 0.23
ACGTcount: A:0.35, C:0.26, G:0.14, T:0.25
Consensus pattern (43 bp):
CAATGCCATAATCCCAAACATGGTCTTACACGAAATCAAATAT
Found at i:93952043 original size:80 final size:81
Alignment explanation
Indices: 93951908--93952065 Score: 196
Period size: 80 Copynumber: 2.0 Consensus size: 81
93951898 CTTGTCTCAA
* * *
93951908 TGTCTATTTCAATTCAAAAAGTATAGCCACATTCGGCTCAATTTATTTATTCAAACACACATGCA
1 TGTCTATTTCAATTCAAAAAGTATAGCCACATTCGGCTCAATTCATTTATCCAAACACACATCCA
93951973 GCACATTATATTTCTG
66 GCACATTATATTTCTG
* * * * *
93951989 TGTCTATTTCAGATT-AATAA-TTTAGCCACATTCGGCTCTAA-TCATTTCTCCAAACATATATC
1 TGTCTATTTCA-ATTCAAAAAGTATAGCCACATTCGGCTC-AATTCATTTATCCAAACACACATC
*
93952051 CATCACATTATATTT
64 CAGCACATTATATTT
93952066 ATACATCTAT
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
80 46 0.70
81 17 0.26
82 3 0.05
ACGTcount: A:0.32, C:0.22, G:0.08, T:0.38
Consensus pattern (81 bp):
TGTCTATTTCAATTCAAAAAGTATAGCCACATTCGGCTCAATTCATTTATCCAAACACACATCCA
GCACATTATATTTCTG
Found at i:93953206 original size:7 final size:7
Alignment explanation
Indices: 93953196--93953234 Score: 71
Period size: 7 Copynumber: 5.7 Consensus size: 7
93953186 AAAAAATATA
93953196 TTTTTA-
1 TTTTTAT
93953202 TTTTTAT
1 TTTTTAT
93953209 TTTTTAT
1 TTTTTAT
93953216 TTTTTAT
1 TTTTTAT
93953223 TTTTTAT
1 TTTTTAT
93953230 TTTTT
1 TTTTT
93953235 TTACTCGGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 6 0.19
7 26 0.81
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (7 bp):
TTTTTAT
Found at i:93954139 original size:29 final size:29
Alignment explanation
Indices: 93954066--93954139 Score: 103
Period size: 29 Copynumber: 2.6 Consensus size: 29
93954056 TTATACCAAA
*
93954066 TTGGATTCGGGCCATGCATATCGAAAGAT
1 TTGGCTTCGGGCCATGCATATCGAAAGAT
* * *
93954095 TTGGCTTCGGGACATGCATATCGGATGAT
1 TTGGCTTCGGGCCATGCATATCGAAAGAT
*
93954124 TTGGCTTCAGGCCATG
1 TTGGCTTCGGGCCATG
93954140 ATAATTGATC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.30
Consensus pattern (29 bp):
TTGGCTTCGGGCCATGCATATCGAAAGAT
Found at i:93954709 original size:25 final size:25
Alignment explanation
Indices: 93954679--93954729 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
93954669 AATAGGAATG
*
93954679 GCTTATTTTGGCATGTTTAGTGTGA
1 GCTTATTTTGGCATGTTTAGTATGA
93954704 GCTTATTTTGGCATGTTTAGTATGA
1 GCTTATTTTGGCATGTTTAGTATGA
93954729 G
1 G
93954730 TTTGGTTAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.18, C:0.08, G:0.27, T:0.47
Consensus pattern (25 bp):
GCTTATTTTGGCATGTTTAGTATGA
Found at i:93965536 original size:40 final size:39
Alignment explanation
Indices: 93965491--93965622 Score: 176
Period size: 40 Copynumber: 3.3 Consensus size: 39
93965481 GCTACTCACT
93965491 CAAATGCCTTCGGGATATAGCCC-GATTATAGTAACTCGCA
1 CAAATGCCTTCGGGAT-TAGCCCAGATT-TAGTAACTCGCA
* *
93965531 GAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-TTAGCCCAGATTTAGTAACTCGCA
* * * *
93965571 CCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGATTAGCCCAGATTTAGTAACTCGCA
93965610 CAAATGCCTTCGG
1 CAAATGCCTTCGG
93965623 ATCCTAGTCC
Statistics
Matches: 81, Mismatches: 9, Indels: 5
0.85 0.09 0.05
Matches are distributed among these distances:
39 33 0.41
40 43 0.53
41 5 0.06
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGATTAGCCCAGATTTAGTAACTCGCA
Found at i:93966882 original size:120 final size:120
Alignment explanation
Indices: 93966669--93966907 Score: 478
Period size: 120 Copynumber: 2.0 Consensus size: 120
93966659 AAATGTAACC
93966669 CCCCGAACCCGAGACCGACACCGGAGTCGAACACGAGGTGTTAACAGACTTTAAACCCCTTATAA
1 CCCCGAACCCGAGACCGACACCGGAGTCGAACACGAGGTGTTAACAGACTTTAAACCCCTTATAA
93966734 AAAATATTTCCCAGACACTGCCAATCTGCGTACTAGTCGCTTTAAAAATCATATA
66 AAAATATTTCCCAGACACTGCCAATCTGCGTACTAGTCGCTTTAAAAATCATATA
93966789 CCCCGAACCCGAGACCGACACCGGAGTCGAACACGAGGTGTTAACAGACTTTAAACCCCTTATAA
1 CCCCGAACCCGAGACCGACACCGGAGTCGAACACGAGGTGTTAACAGACTTTAAACCCCTTATAA
93966854 AAAATATTTCCCAGACACTGCCAATCTGCGTACTAGTCGCTTTAAAAATCATAT
66 AAAATATTTCCCAGACACTGCCAATCTGCGTACTAGTCGCTTTAAAAATCATAT
93966908 CTTGAGTTTC
Statistics
Matches: 119, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
120 119 1.00
ACGTcount: A:0.34, C:0.28, G:0.16, T:0.22
Consensus pattern (120 bp):
CCCCGAACCCGAGACCGACACCGGAGTCGAACACGAGGTGTTAACAGACTTTAAACCCCTTATAA
AAAATATTTCCCAGACACTGCCAATCTGCGTACTAGTCGCTTTAAAAATCATATA
Found at i:93968240 original size:79 final size:81
Alignment explanation
Indices: 93968138--93968321 Score: 222
Period size: 79 Copynumber: 2.3 Consensus size: 81
93968128 GCTCCTCGTT
* *
93968138 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAACC
*
93968200 CGGAT-TTAGTAAC-TCGCA
63 CGGATATT-GTAACTTAGCA
**
93968218 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
*
93968282 ATATTGTCACTTAGCA
66 ATATTGTAACTTAGCA
93968298 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
93968322 CATCATTCAA
Statistics
Matches: 92, Mismatches: 6, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
78 14 0.15
79 56 0.61
80 22 0.24
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATTGTAACTTAGCA
Found at i:93968255 original size:39 final size:41
Alignment explanation
Indices: 93968138--93968321 Score: 199
Period size: 40 Copynumber: 4.6 Consensus size: 41
93968128 GCTCCTCGTT
* *
93968138 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAATCTCGCA
* *
93968178 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAA-CTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
93968218 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
* * *
93968257 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAATC-TCGCA
93968298 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
93968322 CATCATTCAA
Statistics
Matches: 128, Mismatches: 7, Indels: 19
0.83 0.05 0.12
Matches are distributed among these distances:
38 3 0.02
39 48 0.38
40 66 0.52
41 11 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
Found at i:93975567 original size:150 final size:150
Alignment explanation
Indices: 93975296--93975596 Score: 593
Period size: 150 Copynumber: 2.0 Consensus size: 150
93975286 TTACATAATT
*
93975296 TATTCACTATTTAATTCTCTTCCTACTATTTTTAGTGATTTTCCAAATCTACATCACTGCTGTTG
1 TATTCACTATTTAATTCCCTTCCTACTATTTTTAGTGATTTTCCAAATCTACATCACTGCTGTTG
93975361 TCAGCATCTGCCTTTAAGGTAGACTTTACCTATTTCATGGTTTCCATGATTCAACTAGCCCTTTT
66 TCAGCATCTGCCTTTAAGGTAGACTTTACCTATTTCATGGTTTCCATGATTCAACTAGCCCTTTT
93975426 TGCATAAATAGCACAATTTA
131 TGCATAAATAGCACAATTTA
93975446 TATTCACTATTTAATTCCCTTCCTACTATTTTTAGTGATTTTCCAAATCTACATCACTGCTGTTG
1 TATTCACTATTTAATTCCCTTCCTACTATTTTTAGTGATTTTCCAAATCTACATCACTGCTGTTG
93975511 TCAGCATCTGCCTTTAAGGTAGACTTTACCTATTTCATGGTTTCCATGATTCAACTAGCCCTTTT
66 TCAGCATCTGCCTTTAAGGTAGACTTTACCTATTTCATGGTTTCCATGATTCAACTAGCCCTTTT
93975576 TGCATAAATAGCACAATTTA
131 TGCATAAATAGCACAATTTA
93975596 T
1 T
93975597 GATAGTGATT
Statistics
Matches: 150, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 150 1.00
ACGTcount: A:0.25, C:0.22, G:0.11, T:0.42
Consensus pattern (150 bp):
TATTCACTATTTAATTCCCTTCCTACTATTTTTAGTGATTTTCCAAATCTACATCACTGCTGTTG
TCAGCATCTGCCTTTAAGGTAGACTTTACCTATTTCATGGTTTCCATGATTCAACTAGCCCTTTT
TGCATAAATAGCACAATTTA
Found at i:93976268 original size:40 final size:40
Alignment explanation
Indices: 93976238--93976501 Score: 351
Period size: 40 Copynumber: 6.7 Consensus size: 40
93976228 GCTCCTCGTT
* * *
93976238 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
93976278 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
93976318 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
93976358 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
93976398 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * *
93976437 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGAT-TTAGTAAC-TCGCA
*
93976478 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
93976502 CATCATTCAA
Statistics
Matches: 206, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
38 2 0.01
39 49 0.24
40 146 0.71
41 9 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:93976901 original size:52 final size:52
Alignment explanation
Indices: 93976821--93976924 Score: 154
Period size: 52 Copynumber: 2.0 Consensus size: 52
93976811 CATCATTTAG
* * *
93976821 GCATCAAAAAGATGAACACAAGGCACTTAGCCCATATTTATACATTAGACAT
1 GCATCAAAAAGAGGAACACAAAGCACTTAGCCCATATATATACATTAGACAT
* * *
93976873 GCATCGAAAAGAGGAACTCAAAGTACTTAGCCCATATATATACATTAGACAT
1 GCATCAAAAAGAGGAACACAAAGCACTTAGCCCATATATATACATTAGACAT
93976925 TAAAGTCACA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.42, C:0.20, G:0.14, T:0.23
Consensus pattern (52 bp):
GCATCAAAAAGAGGAACACAAAGCACTTAGCCCATATATATACATTAGACAT
Found at i:93981567 original size:12 final size:11
Alignment explanation
Indices: 93981499--93981598 Score: 62
Period size: 12 Copynumber: 8.8 Consensus size: 11
93981489 AAACATACAT
*
93981499 TAATATATATAT
1 TAATATA-ATAA
93981511 TAATATGAATAA
1 TAATAT-AATAA
* *
93981523 TAAAAATAATGA
1 T-AATATAATAA
**
93981535 TAATATGTTAA
1 TAATATAATAA
*
93981546 TAAATATAATAG
1 T-AATATAATAA
93981558 TAATAT--TAA
1 TAATATAATAA
*
93981567 TAATAATAATAG
1 TAAT-ATAATAA
93981579 TAAATATAATAA
1 T-AATATAATAA
93981591 TAA-ATAAT
1 TAATATAAT
93981599 GTTACAAGTA
Statistics
Matches: 68, Mismatches: 13, Indels: 16
0.70 0.13 0.16
Matches are distributed among these distances:
9 6 0.09
10 7 0.10
11 14 0.21
12 33 0.49
13 8 0.12
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (11 bp):
TAATATAATAA
Found at i:93981572 original size:3 final size:3
Alignment explanation
Indices: 93981518--93981598 Score: 51
Period size: 3 Copynumber: 27.0 Consensus size: 3
93981508 TATTAATATG
* * ** *
93981518 AAT AAT AAA AAT AAT GAT AAT -AT GTT AAT AA- ATAT AAT AGT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT
* *
93981562 ATT AAT AAT AAT AAT AGT AA- ATAT AAT AAT AAAT AAT
1 AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT -AAT AAT
93981599 GTTACAAGTA
Statistics
Matches: 59, Mismatches: 13, Indels: 12
0.70 0.15 0.14
Matches are distributed among these distances:
2 4 0.07
3 50 0.85
4 5 0.08
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (3 bp):
AAT
Found at i:93981587 original size:15 final size:15
Alignment explanation
Indices: 93981543--93981593 Score: 57
Period size: 15 Copynumber: 3.2 Consensus size: 15
93981533 GATAATATGT
*
93981543 TAATAAATATAATAG
1 TAATAAATATAATAA
93981558 TAATATTAATAATAATAA
1 TAATA--AAT-ATAATAA
*
93981576 TAGTAAATATAATAA
1 TAATAAATATAATAA
93981591 TAA
1 TAA
93981594 ATAATGTTAC
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
15 14 0.47
16 3 0.10
17 3 0.10
18 10 0.33
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (15 bp):
TAATAAATATAATAA
Found at i:93983022 original size:21 final size:21
Alignment explanation
Indices: 93982980--93983023 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
93982970 AAACCATTAG
* *
93982980 AATAAATAATATATAAAAATA
1 AATAAATAATAGAAAAAAATA
93983001 AATAAATAA-AGAAAAAATATA
1 AATAAATAATAGAAAAAA-ATA
93983022 AA
1 AA
93983024 AGAATTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.23
Consensus pattern (21 bp):
AATAAATAATAGAAAAAAATA
Found at i:93988324 original size:43 final size:44
Alignment explanation
Indices: 93988265--93988561 Score: 346
Period size: 43 Copynumber: 7.0 Consensus size: 44
93988255 ATATCGTACA
*
93988265 ATGCCAAC-GTCCCAGACGTGGTCTTACATGTAATCACATATCG
1 ATGCCAACTGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* *
93988308 ATACC-ACTGTCCCAGACAG-GGTCTTACACG-AATCAAATA-CG
1 ATGCCAACTGTCCCAGAC-GTGGTCTTACACGTAATCACATATCG
* * * *
93988349 ATGCCGA-TGTACCAGACATGGTCTTACATGTAATCACATATCG
1 ATGCCAACTGTCCCAGACGTGGTCTTACACGTAATCACATATCG
*
93988392 ATGCCAAC-GTCCCAGACGTGGTCTTACAAGTAATCACATATCG
1 ATGCCAACTGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* *
93988435 ATGCC-ACTGTCCCAGACAG-GGTCTTACACATAATCACATACCG
1 ATGCCAACTGTCCCAGAC-GTGGTCTTACACGTAATCACATATCG
* * **
93988478 ATGCCAA-TGTCCCAAACATGGTCTTATGCGTAATCACATATCG
1 ATGCCAACTGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * *
93988521 ATGCCAAC-ATCCCAGACATGGTCTTACATGTAATCACATAT
1 ATGCCAACTGTCCCAGACGTGGTCTTACACGTAATCACATAT
93988562 TGGAATCACA
Statistics
Matches: 216, Mismatches: 26, Indels: 24
0.81 0.10 0.09
Matches are distributed among these distances:
41 25 0.12
42 21 0.10
43 167 0.77
44 3 0.01
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.25
Consensus pattern (44 bp):
ATGCCAACTGTCCCAGACGTGGTCTTACACGTAATCACATATCG
Found at i:93988546 original size:129 final size:127
Alignment explanation
Indices: 93988265--93988561 Score: 468
Period size: 129 Copynumber: 2.3 Consensus size: 127
93988255 ATATCGTACA
93988265 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCGATACCACTGTCCCAGACAGGGT
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCGATACCACTGTCCCAGACAGGGT
* * *
93988330 CTTACACGAATCAAATACGATGCCGATGTACCAGACATGGTCTTACATGTAATCACATATCG
66 CTTACACGAATCAAATACGATGCCAATGTACCAAACATGGTCTTACACGTAATCACATATCG
* *
93988392 ATGCCAACGTCCCAGACGTGGTCTTACAAGTAATCACATATCGATGCCACTGTCCCAGACAGGGT
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCGATACCACTGTCCCAGACAGGGT
* * * **
93988457 CTTACACATAATCACATACCGATGCCAATGTCCCAAACATGGTCTTATGCGTAATCACATATCG
66 CTTACAC-GAATCAAATA-CGATGCCAATGTACCAAACATGGTCTTACACGTAATCACATATCG
* *
93988521 ATGCCAACATCCCAGACATGGTCTTACATGTAATCACATAT
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATAT
93988562 TGGAATCACA
Statistics
Matches: 155, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
127 70 0.45
128 8 0.05
129 77 0.50
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.25
Consensus pattern (127 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCGATACCACTGTCCCAGACAGGGT
CTTACACGAATCAAATACGATGCCAATGTACCAAACATGGTCTTACACGTAATCACATATCG
Found at i:93995398 original size:48 final size:48
Alignment explanation
Indices: 93995327--93995423 Score: 140
Period size: 48 Copynumber: 2.0 Consensus size: 48
93995317 GTGCCCCTAT
* * *
93995327 TGACCAATTTCTCTTCTTTCTTTACTTATATAGAAATCGCTCTTTCCC
1 TGACCAATTTCTCTTCTTCCTTTACTCATATAGAAATCACTCTTTCCC
* * *
93995375 TGACCGATTTCTCTTCTTCCTTTACTCATATAGTAATCATTCTTTCCC
1 TGACCAATTTCTCTTCTTCCTTTACTCATATAGAAATCACTCTTTCCC
93995423 T
1 T
93995424 TGTTCCCTTT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.20, C:0.28, G:0.06, T:0.46
Consensus pattern (48 bp):
TGACCAATTTCTCTTCTTCCTTTACTCATATAGAAATCACTCTTTCCC
Found at i:94013129 original size:213 final size:212
Alignment explanation
Indices: 94012652--94013518 Score: 1109
Period size: 213 Copynumber: 4.2 Consensus size: 212
94012642 CTTTCCAAGG
*
94012652 AAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
1 AAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTG
* ** * **
94012717 TTTAAAAAAATCAACTCATATTGCGAGA-AGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTT
66 TTTAAAAAAATCAACTCATATTACGAGAGA-TGAGTTGAGCCTCAAGACACGTTGAGGTATTTTT
* * ***** **
94012781 -AGTTTATGTTTTAAATTGACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTA
130 AAATTTTTAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTA
94012845 TTTTTAAATTTGTTTAAA
195 TTTTTAAATTTGTTTAAA
94012863 AAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTG
1 AAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTG
94012928 TTTAAAAAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTA
66 TTTAAAAAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTA
* * *
94012993 AATTTGTTTAAAAAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTA
131 AATTT-TTAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTA
94013058 TTTTTAAATTTGTTTAAA
195 TTTTTAAATTTGTTTAAA
94013076 AAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTG
1 AAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTG
94013141 TTTAAAAAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTA
66 TTTAAAAAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTA
* * ** * ** *
94013206 AATTTTTAAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCGGGGCACGCCGAGGCA
131 AATTTTT-AAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTA
**
94013271 TTTTTAGTTTATGTTT---
195 TTTTTAAATT-TGTTTAAA
* ** * * * * *
94013287 TAAATTGACTCATATT--GCGAGA-G-G-TGAG--TTAAG-C-CTTTTA---ATTTTT---GTT-
1 AAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTG
* * *
94013336 TTT--CAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTA
66 TTTAAAAAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTA
*
94013399 AATTTTAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTA
131 AATTTT-TAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTA
94013464 TTTTTAAATTT-TTTAAAA
195 TTTTTAAATTTGTTT-AAA
* *
94013482 AAAATCAACTCATATTGCGAGA-AGCGAGTTGAGCCTC
1 AAAATCAACTCATATTACGAGAGA-TGAGTTGAGCCTC
94013519 GGGGCACGCC
Statistics
Matches: 580, Mismatches: 58, Indels: 45
0.85 0.08 0.07
Matches are distributed among these distances:
191 3 0.01
192 1 0.00
193 120 0.21
195 16 0.03
196 3 0.01
197 3 0.01
198 1 0.00
199 7 0.01
200 4 0.01
202 5 0.01
203 1 0.00
204 4 0.01
206 4 0.01
207 1 0.00
208 1 0.00
209 5 0.01
211 133 0.23
212 7 0.01
213 256 0.44
214 5 0.01
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33
Consensus pattern (212 bp):
AAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTG
TTTAAAAAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTA
AATTTTTAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAT
TTTTAAATTTGTTTAAA
Found at i:94013276 original size:71 final size:71
Alignment explanation
Indices: 94012652--94013254 Score: 975
Period size: 71 Copynumber: 8.5 Consensus size: 71
94012642 CTTTCCAAGG
*
94012652 AAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
1 AAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTG
94012717 TTTAAA
66 TTTAAA
* ** * ** **
94012723 AAAATCAACTCATATTGCGAGA-AGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
1 AAAATCAACTCATATTACGAGAGA-TGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATT-
94012787 TGTTT---
64 TGTTTAAA
* ** * *
94012792 TAAATTGACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTG
1 AAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTG
94012857 TTTAAA
66 TTTAAA
94012863 AAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTG
1 AAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTG
94012928 TTTAAA
66 TTTAAA
94012934 AAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTG
1 AAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTG
94012999 TTTAAA
66 TTTAAA
94013005 AAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTG
1 AAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTG
94013070 TTTAAA
66 TTTAAA
94013076 AAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTG
1 AAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTG
94013141 TTTAAA
66 TTTAAA
94013147 AAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTT-
1 AAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTG
*
94013211 TTAAAAA
66 TT-TAAA
* *
94013218 AAAATCAACTCATATTGCGAGA-AGTGAGTTGAACCTC
1 AAAATCAACTCATATTACGAGAGA-TGAGTTGAGCCTC
94013255 GGGGCACGCC
Statistics
Matches: 497, Mismatches: 27, Indels: 16
0.92 0.05 0.03
Matches are distributed among these distances:
68 5 0.01
69 51 0.10
70 5 0.01
71 432 0.87
72 4 0.01
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.32
Consensus pattern (71 bp):
AAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTG
TTTAAA
Found at i:94013540 original size:71 final size:71
Alignment explanation
Indices: 94013340--94013518 Score: 322
Period size: 71 Copynumber: 2.5 Consensus size: 71
94013330 TTTGTTTTTC
94013340 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
94013405 AAAAAA
66 AAAAAA
94013411 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
**
94013476 TTAAAA
66 AAAAAA
**
94013482 AAAATCAACTCATATTGCGAGAAGCGAGTTGAGCCTC
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC
94013519 GGGGCACGCC
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
71 104 1.00
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.29
Consensus pattern (71 bp):
AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
AAAAAA
Found at i:94013540 original size:264 final size:265
Alignment explanation
Indices: 94013075--94013641 Score: 1012
Period size: 264 Copynumber: 2.1 Consensus size: 265
94013065 ATTTGTTTAA
*
94013075 AAAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTT
** *
94013140 GTTTAAAAAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTT
66 GTAAAAAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTT
*
94013205 AAATTTTTAAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCGGGGCACGCCGAGGC
131 AAATTTTTAAAAAAAAATCAACTCATATTGCGAGAAGCGAGTTGAACCTCGGGGCACGCCGAGGC
94013270 ATTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGT
196 ATTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGT
94013335 TTTTC
261 TTTTC
*
94013340 -AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTT
*
94013404 -TAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTT
66 GT-AAAAAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTT
* *
94013468 TAAATTTTTTAAAAAAAATCAACTCATATTGCGAGAAGCGAGTTGAGCCTCGGGGCACGCCGAGG
130 TAAATTTTTAAAAAAAAATCAACTCATATTGCGAGAAGCGAGTTGAACCTCGGGGCACGCCGAGG
*
94013533 TATTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTG
195 CATTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTG
94013598 TTTTTC
260 TTTTTC
*
94013604 AAAAATCAACTCATATTGCAAGAGATGAGTTGAGCCTC
1 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTC
94013642 GGCTCACATG
Statistics
Matches: 288, Mismatches: 12, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
263 1 0.00
264 252 0.88
265 35 0.12
ACGTcount: A:0.33, C:0.14, G:0.20, T:0.33
Consensus pattern (265 bp):
AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTT
GTAAAAAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTT
AAATTTTTAAAAAAAAATCAACTCATATTGCGAGAAGCGAGTTGAACCTCGGGGCACGCCGAGGC
ATTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGT
TTTTC
Found at i:94013804 original size:85 final size:88
Alignment explanation
Indices: 94013605--94013842 Score: 263
Period size: 91 Copynumber: 2.7 Consensus size: 88
94013595 TTGTTTTTCA
*
94013605 AAAATCAACTCATATTGCAAGAGATGAGTTGAGCCTC-GGCTCACATGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGC-CACA-GCTGAGGTATTTTCAATT
* **
94013669 TATGTTTTTTTCAATCTATGCTTCTC
64 TATGCTTTACTCAATCTA-GCTTCTC
* **
94013695 AAAAATCAACTTATATTGTGAGAGGTGAGTTGAGCCTCAAGG-CAC-GCTGAGGTATTTTCAATT
1 -AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC-AGGCCACAGCTGAGGTATTTTCAATT
* *
94013758 TCTGCTTTACT-AATTCTA-CTTTTC
64 TATGCTTTACTCAA-TCTAGCTTCTC
* * *
94013782 -AAATCAACTCATATTGCAAGAGGTGAGTTGAGTCTCAGGCCACACGCTAAGGTCTTTTCAA
1 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGCCACA-GCTGAGGTATTTTCAA
94013843 ATTCTGTTTT
Statistics
Matches: 126, Mismatches: 15, Indels: 16
0.80 0.10 0.10
Matches are distributed among these distances:
84 3 0.02
85 35 0.28
87 19 0.15
88 2 0.02
89 29 0.23
91 36 0.29
93 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.34
Consensus pattern (88 bp):
AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGCCACAGCTGAGGTATTTTCAATTTA
TGCTTTACTCAATCTAGCTTCTC
Found at i:94013857 original size:85 final size:88
Alignment explanation
Indices: 94013605--94013857 Score: 270
Period size: 85 Copynumber: 2.9 Consensus size: 88
94013595 TTGTTTTTCA
* *
94013605 AAAATCAACTCATATTGCAAGAGATGAGTTGAGCCTC-GGCTCACATGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGC-CACACGCTGAGGTATTTTCAATT
*
94013669 TATGTTTTTTTCAA-TCTATGCTTCTC
65 TCTG-TTTTTT-AATTCTA-GCTTCTC
* **
94013695 AAAAATCAACTTATATTGTGAGAGGTGAGTTGAGCCTCAAGG---CACGCTGAGGTATTTTCAAT
1 -AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC-AGGCCACACGCTGAGGTATTTTCAAT
** *
94013757 TTCTGCTTTACTAATTCTA-CTTTTC
64 TTCTG-TTTTTTAATTCTAGCTTCTC
* * * *
94013782 -AAATCAACTCATATTGCAAGAGGTGAGTTGAGTCTCAGGCCACACGCTAAGGTCTTTTCAAATT
1 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGCCACACGCTGAGGTATTTTCAATTT
94013846 CTG-TTTTTAATT
66 CTGTTTTTTAATT
94013858 TCTGTTTTTT
Statistics
Matches: 137, Mismatches: 19, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
84 3 0.02
85 39 0.28
87 27 0.20
88 2 0.01
89 31 0.23
91 33 0.24
93 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (88 bp):
AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGCCACACGCTGAGGTATTTTCAATTT
CTGTTTTTTAATTCTAGCTTCTC
Found at i:94014048 original size:54 final size:55
Alignment explanation
Indices: 94013964--94014181 Score: 324
Period size: 54 Copynumber: 4.1 Consensus size: 55
94013954 TCAATTTCTA
*
94013964 CTTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 CTTTTCAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
*
94014019 CTTTT-AATTTCTATTTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGC
1 CTTTTCAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
94014073 C--TT---TTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 CTTTTCAATTTCTATTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* * *
94014124 CTTTTGCAAATTCT-GTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGC
1 CTTTT-CAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
94014179 CTT
1 CTT
94014182 GGCTCACGTG
Statistics
Matches: 150, Mismatches: 6, Indels: 14
0.88 0.04 0.08
Matches are distributed among these distances:
50 12 0.08
51 35 0.23
52 2 0.01
53 2 0.01
54 48 0.32
55 42 0.28
56 5 0.03
57 4 0.03
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (55 bp):
CTTTTCAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
Found at i:94014497 original size:30 final size:30
Alignment explanation
Indices: 94014457--94014558 Score: 134
Period size: 30 Copynumber: 3.4 Consensus size: 30
94014447 TAAAAAATAA
* *
94014457 AAATTGCATTTTGACCCCTAAACTTTTC-CT
1 AAATTTCATTTTGACCCCTAAAC-TTTCATT
* *
94014487 AAATTTCATTTTGACCCTTAAACTTTCTTT
1 AAATTTCATTTTGACCCCTAAACTTTCATT
* *
94014517 AAATTTCACTTAGACCCCTAAACTTTCATT
1 AAATTTCATTTTGACCCCTAAACTTTCATT
94014547 AAATTTCATTTT
1 AAATTTCATTTT
94014559 AATCCTAAAT
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
29 4 0.06
30 58 0.94
ACGTcount: A:0.29, C:0.23, G:0.04, T:0.44
Consensus pattern (30 bp):
AAATTTCATTTTGACCCCTAAACTTTCATT
Found at i:94015581 original size:18 final size:17
Alignment explanation
Indices: 94015502--94015611 Score: 85
Period size: 17 Copynumber: 6.2 Consensus size: 17
94015492 TTTTCAAGAG
94015502 TTTTCGTGTTTCAAAAGAA
1 TTTTCGTGTTTC-AAA-AA
* * *
94015521 TTTCCGCGATTTTAAAAA
1 TTTTCGTG-TTTCAAAAA
** *
94015539 AATTCGTATTTCAAAAA
1 TTTTCGTGTTTCAAAAA
*
94015556 TTTTCGTGTTTCCAAAA
1 TTTTCGTGTTTCAAAAA
*
94015573 TTTTGCGTGTTTTAAAAA
1 TTTT-CGTGTTTCAAAAA
**
94015591 TCCTCGTGTTTTCAAAAA
1 TTTTCGTG-TTTCAAAAA
94015609 TTT
1 TTT
94015612 CAGTGTTTTG
Statistics
Matches: 68, Mismatches: 20, Indels: 7
0.72 0.21 0.07
Matches are distributed among these distances:
17 29 0.43
18 27 0.40
19 9 0.13
20 3 0.04
ACGTcount: A:0.31, C:0.14, G:0.12, T:0.44
Consensus pattern (17 bp):
TTTTCGTGTTTCAAAAA
Found at i:94015590 original size:35 final size:35
Alignment explanation
Indices: 94015551--94015628 Score: 95
Period size: 35 Copynumber: 2.2 Consensus size: 35
94015541 TTCGTATTTC
*
94015551 AAAAATTTTCGTGTTTCCAAAATTTTGC-GTGTTTT
1 AAAAATTTTCGTGTTTCCAAAAATTT-CAGTGTTTT
** *
94015586 AAAAATCCTCGTGTTTTCAAAAATTTCAGTGTTTT
1 AAAAATTTTCGTGTTTCCAAAAATTTCAGTGTTTT
*
94015621 GAAAATTT
1 AAAAATTT
94015629 GTGTTTTTTT
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
34 1 0.03
35 34 0.97
ACGTcount: A:0.31, C:0.12, G:0.13, T:0.45
Consensus pattern (35 bp):
AAAAATTTTCGTGTTTCCAAAAATTTCAGTGTTTT
Found at i:94015617 original size:18 final size:17
Alignment explanation
Indices: 94015503--94015635 Score: 87
Period size: 18 Copynumber: 7.6 Consensus size: 17
94015493 TTTCAAGAGT
94015503 TTTCGTG-TTTCAAAAGAA
1 TTTCGTGTTTTC-AAA-AA
* *
94015521 TTTCCGCGATTTTAAAAAA
1 TTT-CGTG-TTTTCAAAAA
* *
94015540 ATTCGT-ATTTCAAAAA
1 TTTCGTGTTTTCAAAAA
* *
94015556 TTTTCGTGTTTCCAAAAT
1 -TTTCGTGTTTTCAAAAA
94015574 TTTGCGTGTTTT-AAAAA
1 TTT-CGTGTTTTCAAAAA
*
94015591 TCCTCGTGTTTTCAAAAA
1 T-TTCGTGTTTTCAAAAA
*
94015609 TTTCAGTGTTTT-GAAAA
1 TTTC-GTGTTTTCAAAAA
94015626 TTT-GTGTTTT
1 TTTCGTGTTTT
94015636 TTTAATAAAA
Statistics
Matches: 91, Mismatches: 15, Indels: 21
0.72 0.12 0.17
Matches are distributed among these distances:
15 7 0.08
16 8 0.09
17 30 0.33
18 33 0.36
19 7 0.08
20 3 0.03
21 3 0.03
ACGTcount: A:0.29, C:0.12, G:0.14, T:0.45
Consensus pattern (17 bp):
TTTCGTGTTTTCAAAAA
Found at i:94015772 original size:20 final size:20
Alignment explanation
Indices: 94015749--94015787 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
94015739 TCATGTTTTC
*
94015749 AAAAAATTTTCTCGTGTTCAA
1 AAAAAAATTT-TCGTGTTCAA
94015770 AAAAAAATTTTCGTGTTC
1 AAAAAAATTTTCGTGTTC
94015788 TTTTTAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.38, C:0.13, G:0.10, T:0.38
Consensus pattern (20 bp):
AAAAAAATTTTCGTGTTCAA
Done.