Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 308 of 313
Found at i:94802594 original size:27 final size:27
Alignment explanation
Indices: 94802513--94802596 Score: 82
Period size: 27 Copynumber: 3.1 Consensus size: 27
94802503 GTGATAGAGT
* * *
94802513 CACCAGATATAGAT-ATTGTGGCAGAGC
1 CACCAGA-ACAGATAATTGTAGCAAAGC
* * *
94802540 CACCAGAACAGATATTTGTGGCACAGC
1 CACCAGAACAGATAATTGTAGCAAAGC
94802567 CACCAGAAACAGATAATT-TAGCAAAGC
1 CACCAG-AACAGATAATTGTAGCAAAGC
94802594 CAC
1 CAC
94802597 TTAACAGAAT
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
26 5 0.10
27 34 0.69
28 10 0.20
ACGTcount: A:0.38, C:0.24, G:0.20, T:0.18
Consensus pattern (27 bp):
CACCAGAACAGATAATTGTAGCAAAGC
Found at i:94802791 original size:22 final size:22
Alignment explanation
Indices: 94802755--94802819 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 22
94802745 GCAAATACGT
* *
94802755 TTGGCACACAACCATAATCAGG
1 TTGGCACAGAGCCATAATCAGG
*
94802777 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAGAGCCATAAT-CAGG
*
94802799 TTGACAC-GAAGCCATAATCAG
1 TTGGCACAG-AGCCATAATCAG
94802820 AAGGCTTTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
21 3 0.09
22 30 0.86
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAGAGCCATAATCAGG
Found at i:94803303 original size:27 final size:27
Alignment explanation
Indices: 94803245--94803440 Score: 250
Period size: 27 Copynumber: 7.3 Consensus size: 27
94803235 AGGGGCAAAA
* * * *
94803245 TGGTAATTTTACCCCACA-AGGTATCT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
94803271 CGGTAATTCCACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
*
94803298 TAGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
94803325 CGGTAATTCTACCCTACAGGGGTATTG
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
94803352 CGATAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
*
94803379 CGGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* * *
94803406 TAGTATTTCTACCCTACAAGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
94803433 TGGTAATT
1 TGGTAATT
94803441 TTTAAATCGA
Statistics
Matches: 148, Mismatches: 21, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
26 14 0.09
27 134 0.91
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (27 bp):
TGGTAATTCTACCCTACAGGGGTATTT
Found at i:94803490 original size:27 final size:26
Alignment explanation
Indices: 94803422--94803491 Score: 68
Period size: 27 Copynumber: 2.7 Consensus size: 26
94803412 TTCTACCCTA
* *
94803422 CAAGGGTATTTTGGTAATTTTTAAAT
1 CAAGGGTAATTTGGTAATTTGTAAAT
* ***
94803448 CGAGGGTAAAACGGTAATTCTGTAAAT
1 CAAGGGTAATTTGGTAATT-TGTAAAT
*
94803475 CAAGGGTACTTTGGTAA
1 CAAGGGTAATTTGGTAA
94803492 GTTTACAAGT
Statistics
Matches: 32, Mismatches: 11, Indels: 1
0.73 0.25 0.02
Matches are distributed among these distances:
26 14 0.44
27 18 0.56
ACGTcount: A:0.33, C:0.09, G:0.24, T:0.34
Consensus pattern (26 bp):
CAAGGGTAATTTGGTAATTTGTAAAT
Found at i:94803590 original size:81 final size:80
Alignment explanation
Indices: 94803471--94803818 Score: 252
Period size: 81 Copynumber: 4.3 Consensus size: 80
94803461 GTAATTCTGT
* * * * * ***
94803471 AAATCAAGGGTACTTTGGTAAGTTTAC-AAGTCGAGGGTATTTCAATAATTTAACAGGTC-GAAG
1 AAATC-AGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTAATAATTTAACAAACCAG-AG
94803534 GTATTTCAATAATTTCAC
63 GTATTTCAATAATTTCAC
* * *
94803552 AAATCAGGGATATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAGGGGT
1 AAATCAGGG-TATTTTGGTAATTTTACAAACTAGGGGTATTTTAATAATTTAACAAACCAGAGGT
*** *
94803617 ATTTTGGTAATTTTAC
65 ATTTCAATAATTTCAC
* * * * * * *
94803633 AAACCAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGT
1 AAATCA-GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAATAATTTAACAAACCAGAGGT
*** ***
94803698 ATTTTGGTAATTTTGT
65 ATTTCAATAATTTCAC
* * ** * * *
94803714 AAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCA-AGGG
1 AAATC-AGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAATAATTTAACAAACCAGA-GG
* * *
94803778 TATTTTAGTAATTTTAC
64 TATTTCAATAATTTCAC
*
94803795 AAACCAGGGGTATTTTGGTAATTT
1 AAATCA-GGGTATTTTGGTAATTT
94803819 GGTAAACTAA
Statistics
Matches: 227, Mismatches: 33, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
80 5 0.02
81 213 0.94
82 9 0.04
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.38
Consensus pattern (80 bp):
AAATCAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAATAATTTAACAAACCAGAGGTA
TTTCAATAATTTCAC
Found at i:94803825 original size:27 final size:27
Alignment explanation
Indices: 94803543--94803818 Score: 408
Period size: 27 Copynumber: 10.2 Consensus size: 27
94803533 GGTATTTCAA
* * *
94803543 TAATTTCACAAATCAGGGATATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
* *
94803570 TAATTTTACAAACTAGGGGTATTTTGA
1 TAATTTTACAAACCAGGGGTATTTTGG
94803597 TAATTTTACAAACCAGGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
94803624 TAATTTTACAAACCAGGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
* * * *
94803651 TAATTTTATAAACAAAGGGTATTTTAG
1 TAATTTTACAAACCAGGGGTATTTTGG
94803678 TAATTTTACAAACCAGGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
** *
94803705 TAATTTTGTAAACCAAGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
94803732 TAATTTTACAAACCAGGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
* * * *
94803759 TGATTTTATAAACCAAGGGTATTTTAG
1 TAATTTTACAAACCAGGGGTATTTTGG
94803786 TAATTTTACAAACCAGGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
94803813 TAATTT
1 TAATTT
94803819 GGTAAACTAA
Statistics
Matches: 220, Mismatches: 29, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 220 1.00
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
TAATTTTACAAACCAGGGGTATTTTGG
Found at i:94807952 original size:17 final size:15
Alignment explanation
Indices: 94807918--94807962 Score: 54
Period size: 17 Copynumber: 2.8 Consensus size: 15
94807908 CCTTCTTTTA
94807918 TAATTAAATTAAATT
1 TAATTAAATTAAATT
94807933 TAATTAATATTTAAATT
1 TAATTAA-A-TTAAATT
*
94807950 TAACTCAAATTAA
1 TAA-TTAAATTAA
94807963 CCCCCAATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
15 7 0.27
16 5 0.19
17 11 0.42
18 3 0.12
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.44
Consensus pattern (15 bp):
TAATTAAATTAAATT
Found at i:94813908 original size:20 final size:20
Alignment explanation
Indices: 94813883--94813923 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
94813873 TGTTCTATTA
94813883 CGTCGAGGTTTAGAAACATT
1 CGTCGAGGTTTAGAAACATT
94813903 CGTCGAGGTTTAGAAACATT
1 CGTCGAGGTTTAGAAACATT
94813923 C
1 C
94813924 AAGTGTGTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.29
Consensus pattern (20 bp):
CGTCGAGGTTTAGAAACATT
Found at i:94818588 original size:17 final size:17
Alignment explanation
Indices: 94818559--94818621 Score: 74
Period size: 18 Copynumber: 3.6 Consensus size: 17
94818549 CTTCAAAAAT
*
94818559 AAATAAAAGAAAGAT-A
1 AAATAAAATAAAGATAA
94818575 AAATGAAAATAAAGATAA
1 AAAT-AAAATAAAGATAA
*
94818593 AAATAAAAATAAAAAATAA
1 AAAT-AAAAT-AAAGATAA
94818612 AAATAAAATA
1 AAATAAAATA
94818622 GATGGACTCA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
16 4 0.10
17 11 0.27
18 15 0.37
19 11 0.27
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.16
Consensus pattern (17 bp):
AAATAAAATAAAGATAA
Found at i:94818592 original size:6 final size:5
Alignment explanation
Indices: 94818554--94818621 Score: 52
Period size: 5 Copynumber: 13.2 Consensus size: 5
94818544 TAAGTCTTCA
*
94818554 AAAAT -AAAT AAAAG AAAGAT AAAAT GAAAAT AAAGAT AAAAAT AAAA-
1 AAAAT AAAAT AAAAT AAA-AT AAAAT -AAAAT AAA-AT -AAAAT AAAAT
*
94818601 ATAA- AAAAT AAAAAT AAAAT A
1 AAAAT AAAAT -AAAAT AAAAT A
94818622 GATGGACTCA
Statistics
Matches: 52, Mismatches: 4, Indels: 14
0.74 0.06 0.20
Matches are distributed among these distances:
4 10 0.19
5 21 0.40
6 18 0.35
7 3 0.06
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:94818595 original size:12 final size:11
Alignment explanation
Indices: 94818559--94818621 Score: 60
Period size: 11 Copynumber: 5.9 Consensus size: 11
94818549 CTTCAAAAAT
*
94818559 AAATAAAAGAA
1 AAATAAAATAA
* *
94818570 AGATAAAATGA
1 AAATAAAATAA
94818581 AAATAAAGATAA
1 AAATAAA-ATAA
94818593 AAAT-AAA-AA
1 AAATAAAATAA
*
94818602 TAA-AAAATAA
1 AAATAAAATAA
94818612 AAATAAAATA
1 AAATAAAATA
94818622 GATGGACTCA
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
9 7 0.17
10 5 0.12
11 22 0.54
12 7 0.17
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.16
Consensus pattern (11 bp):
AAATAAAATAA
Found at i:94818607 original size:7 final size:6
Alignment explanation
Indices: 94818574--94818619 Score: 65
Period size: 6 Copynumber: 7.5 Consensus size: 6
94818564 AAAGAAAGAT
* *
94818574 AAAATG AAAATA AAGATA AAAATA AAAATAA AAAATA AAAATA AAA
1 AAAATA AAAATA AAAATA AAAATA AAAAT-A AAAATA AAAATA AAA
94818620 TAGATGGACT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
6 30 0.83
7 6 0.17
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:94818609 original size:13 final size:13
Alignment explanation
Indices: 94818580--94818619 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 13
94818570 AGATAAAATG
*
94818580 AAAATAAAGAT-A
1 AAAATAAAAATAA
94818592 AAAATAAAAATAA
1 AAAATAAAAATAA
94818605 AAAATAAAAATAA
1 AAAATAAAAATAA
94818618 AA
1 AA
94818620 TAGATGGACT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
12 10 0.38
13 16 0.62
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (13 bp):
AAAATAAAAATAA
Found at i:94818621 original size:18 final size:19
Alignment explanation
Indices: 94818553--94818619 Score: 68
Period size: 19 Copynumber: 3.5 Consensus size: 19
94818543 ATAAGTCTTC
94818553 AAAAATAAATAA-AAGAAAGAT
1 AAAAATAAA-AATAA-AAA-AT
* *
94818574 -AAAATGAAAAT-AAAGAT
1 AAAAATAAAAATAAAAAAT
94818591 AAAAATAAAAATAAAAAAT
1 AAAAATAAAAATAAAAAAT
94818610 AAAAATAAAA
1 AAAAATAAAA
94818620 TAGATGGACT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
17 2 0.05
18 12 0.31
19 18 0.46
20 7 0.18
ACGTcount: A:0.79, C:0.00, G:0.06, T:0.15
Consensus pattern (19 bp):
AAAAATAAAAATAAAAAAT
Found at i:94830662 original size:17 final size:17
Alignment explanation
Indices: 94830642--94830679 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
94830632 TTTTATTAAG
94830642 TTTTTAAGATTCATTCA
1 TTTTTAAGATTCATTCA
*
94830659 TTTTTAAGATTCATTTA
1 TTTTTAAGATTCATTCA
94830676 TTTT
1 TTTT
94830680 CCTTTTCGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.26, C:0.08, G:0.05, T:0.61
Consensus pattern (17 bp):
TTTTTAAGATTCATTCA
Found at i:94832144 original size:40 final size:40
Alignment explanation
Indices: 94832089--94832169 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
94832079 AGGACAAGCA
94832089 AATGCTTAAGTGTGGGGGTATTTGATAAACCGTAAATTAT
1 AATGCTTAAGTGTGGGGGTATTTGATAAACCGTAAATTAT
*
94832129 AATGCTTAAGTGTGGGGGTATTTGATAAATCGTAAATTAT
1 AATGCTTAAGTGTGGGGGTATTTGATAAACCGTAAATTAT
94832169 A
1 A
94832170 CATATTTTTA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (40 bp):
AATGCTTAAGTGTGGGGGTATTTGATAAACCGTAAATTAT
Found at i:94833001 original size:275 final size:276
Alignment explanation
Indices: 94832477--94833028 Score: 955
Period size: 275 Copynumber: 2.0 Consensus size: 276
94832467 CGGGCGTGTG
94832477 TCCCAGCGTGTCCCTGCGGAGCCCAAGTTGAGTCCAATTCAGAAAAGGCTAATTTTGAGGGCCTC
1 TCCCAGCGTGTCCCTGCGGAGCCCAAGTTGAGTCCAATTCAGAAAAGGCTAATTTTGAGGGCCTC
* *
94832542 TAGGCATTCCAAAGCCTATAAATACACCCTAGAGGAGGAAAAAAAAGAGAGACGGAGAAGGGGGA
66 TAGGCATTCCAAAGCCTATAAATACACCCTAGAGGAGGAAAAAAAAGAGAGACAGAGAAGAGGGA
* * *
94832607 GTAAGGAGTTACTCCAAGGAAGCCGATTGATCCATCTCGGAAGTCGGATTCATCATCAAAACTGA
131 GTAAGGAATTACTCCAAGGAAGCCGATTGATCCATCTCAGAAGCCGGATTCATCATCAAAACTGA
*
94832672 AGATCTATCCTCAATTTCCCTTCAGAAGTTTTGGGTTTTCTTTATGTTTTGTATTCTTTAGTCTT
196 AGATCTATCCTCAATTCCCCTTCAGAAGTTTTGGGTTTTCTTTATGTTTTGTATTCTTTAGTCTT
94832737 CTGAGATGTTTTCTTA
261 CTGAGATGTTTTCTTA
94832753 TCCCAGCGTGTCCCTGCGGAGCCCAAGTTGAGTCCAATTCAGAAAAGGCTAATTTTGAGGGCCTC
1 TCCCAGCGTGTCCCTGCGGAGCCCAAGTTGAGTCCAATTCAGAAAAGGCTAATTTTGAGGGCCTC
* *
94832818 TAGGCATTCCAAAGCCTATAAATACACCCTAGAGGAGGAAGAAAATAG-G-GACAGAGAATAGGG
66 TAGGCATTCCAAAGCCTATAAATACACCCTAGAGGAGGAA-AAAAAAGAGAGACAGAGAAGAGGG
* * *
94832881 AGTAAGGAATTACTCCAAGGAAGCTGATTGATTCATCTCAGAAGCCGGATTCATCATCAAGACTG
130 AGTAAGGAATTACTCCAAGGAAGCCGATTGATCCATCTCAGAAGCCGGATTCATCATCAAAACTG
* * *
94832946 AAGATCTCTCCTCAATTCCCCTTCAGGAGTTTTGGGTTTTCTTTATGTTTTGTATTCTTTATTCT
195 AAGATCTATCCTCAATTCCCCTTCAGAAGTTTTGGGTTTTCTTTATGTTTTGTATTCTTTAGTCT
94833011 TCTGAGATGTTTTCTTA
260 TCTGAGATGTTTTCTTA
94833028 T
1 T
94833029 TTAGTTATGA
Statistics
Matches: 261, Mismatches: 14, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
275 149 0.57
276 106 0.41
277 6 0.02
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.29
Consensus pattern (276 bp):
TCCCAGCGTGTCCCTGCGGAGCCCAAGTTGAGTCCAATTCAGAAAAGGCTAATTTTGAGGGCCTC
TAGGCATTCCAAAGCCTATAAATACACCCTAGAGGAGGAAAAAAAAGAGAGACAGAGAAGAGGGA
GTAAGGAATTACTCCAAGGAAGCCGATTGATCCATCTCAGAAGCCGGATTCATCATCAAAACTGA
AGATCTATCCTCAATTCCCCTTCAGAAGTTTTGGGTTTTCTTTATGTTTTGTATTCTTTAGTCTT
CTGAGATGTTTTCTTA
Found at i:94847021 original size:12 final size:12
Alignment explanation
Indices: 94847004--94847029 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
94846994 CATTCCGAAG
94847004 TATATATATACA
1 TATATATATACA
94847016 TATATATATACA
1 TATATATATACA
94847028 TA
1 TA
94847030 AGTATGCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
TATATATATACA
Found at i:94847549 original size:27 final size:27
Alignment explanation
Indices: 94847515--94847692 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
94847505 TTTATTGTAC
94847515 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
94847542 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
94847568 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
94847596 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
94847624 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
94847651 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
94847678 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
94847693 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:94847629 original size:82 final size:81
Alignment explanation
Indices: 94847516--94847671 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
94847506 TTATTGTACA
* *
94847516 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
94847580 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
94847597 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
94847662 TGCGAGTTGA
65 TGCGAATTGA
94847672 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:94847683 original size:82 final size:81
Alignment explanation
Indices: 94847512--94847692 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
94847502 GTTTTTATTG
* *
94847512 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
94847577 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
94847593 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
94847657 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
94847675 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
94847693 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:94855610 original size:27 final size:27
Alignment explanation
Indices: 94855579--94855756 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
94855569 TAAATTGTAC
94855579 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
94855606 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
94855632 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
94855660 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
94855688 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
94855715 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
94855742 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
94855757 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:94855693 original size:82 final size:81
Alignment explanation
Indices: 94855580--94855735 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
94855570 AAATTGTACA
* *
94855580 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
94855644 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
94855661 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
94855726 TGCGAGTTGA
65 TGCGAATTGA
94855736 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:94855747 original size:82 final size:81
Alignment explanation
Indices: 94855576--94855756 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
94855566 GATTAAATTG
* *
94855576 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
94855641 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
94855657 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
94855721 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
94855739 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
94855757 GGCTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:94855767 original size:27 final size:27
Alignment explanation
Indices: 94855661--94855767 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
94855651 TGACCATGCG
* * * *
94855661 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
94855689 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
94855716 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
94855743 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
94855768 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:94863799 original size:27 final size:27
Alignment explanation
Indices: 94863768--94863945 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
94863758 TAAATTGTAC
94863768 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
94863795 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
94863821 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
94863849 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
94863877 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
94863904 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
94863931 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
94863946 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:94863882 original size:82 final size:81
Alignment explanation
Indices: 94863769--94863924 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
94863759 AAATTGTACA
* *
94863769 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
94863833 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
94863850 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
94863915 TGCGAGTTGA
65 TGCGAATTGA
94863925 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:94863936 original size:82 final size:81
Alignment explanation
Indices: 94863765--94863945 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
94863755 GATTAAATTG
* *
94863765 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
94863830 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
94863846 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
94863910 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
94863928 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
94863946 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:94871957 original size:19 final size:19
Alignment explanation
Indices: 94871910--94871967 Score: 64
Period size: 19 Copynumber: 2.9 Consensus size: 19
94871900 AAAATGATAA
94871910 AATCAAGTTAAAATGGTTTC
1 AATCAAGTTAAAAT-GTTTC
**
94871930 AATTGAGTTAAACAT-TTTC
1 AATCAAGTTAAA-ATGTTTC
94871949 AATCAAGTTAAAATTGTTT
1 AATCAAGTTAAAA-TGTTT
94871968 TAAAACAAGC
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
18 1 0.03
19 15 0.48
20 13 0.42
21 2 0.06
ACGTcount: A:0.40, C:0.09, G:0.12, T:0.40
Consensus pattern (19 bp):
AATCAAGTTAAAATGTTTC
Found at i:94876216 original size:47 final size:47
Alignment explanation
Indices: 94876096--94876228 Score: 162
Period size: 46 Copynumber: 2.9 Consensus size: 47
94876086 ATAATCTCAC
* * *
94876096 CCATAATGAACTCGGAACGCAACTCAACGAGCTCGGGTG-TTCACAT
1 CCATAATGAACTCAGAACGCAACTCAACGAGTTCGGATGCTTCACAT
** *
94876142 CCATAATGAACTCAGAACAAAACTCAACGAGTTCGGATGCTT-GCAT
1 CCATAATGAACTCAGAACGCAACTCAACGAGTTCGGATGCTTCACAT
* * *
94876188 CCATAGGTGAACTCAGAATGCAACTCAACGAGTTCGAATGC
1 CCATA-ATGAACTCAGAACGCAACTCAACGAGTTCGGATGC
94876229 CTCATAATTC
Statistics
Matches: 74, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
46 42 0.57
47 32 0.43
ACGTcount: A:0.34, C:0.26, G:0.20, T:0.20
Consensus pattern (47 bp):
CCATAATGAACTCAGAACGCAACTCAACGAGTTCGGATGCTTCACAT
Found at i:94881596 original size:12 final size:12
Alignment explanation
Indices: 94881579--94881611 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
94881569 CCTTGATAGG
94881579 AAAATTTATTGT
1 AAAATTTATTGT
94881591 AAAATTTATTGT
1 AAAATTTATTGT
94881603 AAAATTTAT
1 AAAATTTAT
94881612 ATATGTTATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.48
Consensus pattern (12 bp):
AAAATTTATTGT
Found at i:94891479 original size:11 final size:11
Alignment explanation
Indices: 94891457--94891489 Score: 57
Period size: 11 Copynumber: 2.9 Consensus size: 11
94891447 TTAGTTTAGG
94891457 TTTTCATTTTTC
1 TTTTC-TTTTTC
94891469 TTTTCTTTTTC
1 TTTTCTTTTTC
94891480 TTTTCTTTTT
1 TTTTCTTTTT
94891490 GTTGTAGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 16 0.76
12 5 0.24
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (11 bp):
TTTTCTTTTTC
Found at i:94906123 original size:14 final size:15
Alignment explanation
Indices: 94906104--94906159 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
94906094 AATCTTCAAT
94906104 GATATG-CAATCTTA
1 GATATGACAATCTTA
94906118 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
94906135 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
94906153 GATATGA
1 GATATGA
94906160 TATGCAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:94906148 original size:35 final size:37
Alignment explanation
Indices: 94906102--94906180 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
94906092 ATAATCTTCA
94906102 ATGATATGCAATCTTAGATATGATA-CAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
94906138 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGA-
1 ATGATATGCAATCTTAGATATGATA-GCAATCTTAGAT
94906174 A-GATATG
1 ATGATATG
94906181 ATTTTCTAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (37 bp):
ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
Found at i:94906180 original size:17 final size:19
Alignment explanation
Indices: 94906102--94906173 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
94906092 ATAATCTTCA
94906102 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
94906121 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
94906138 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
94906156 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
94906174 AGATATGATT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:94906199 original size:22 final size:22
Alignment explanation
Indices: 94906102--94906196 Score: 79
Period size: 17 Copynumber: 4.8 Consensus size: 22
94906092 ATAATCTTCA
94906102 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
94906121 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
94906138 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
94906156 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
94906178 ATGATTTTCTAATCTTAGA
1 ATGATATGC-AATCTTAGA
94906197 GATTTAATTT
Statistics
Matches: 67, Mismatches: 2, Indels: 10
0.85 0.03 0.13
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 15 0.22
22 11 0.16
23 9 0.13
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:94916059 original size:89 final size:87
Alignment explanation
Indices: 94915930--94916091 Score: 209
Period size: 89 Copynumber: 1.8 Consensus size: 87
94915920 ATTCGACGGA
* * *
94915930 GAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATG
1 GAGCAGATCGAAGACATAGCAGATCTAACCTTCCGATGTTTACAC-T-GAAGCAGATCCAAGATG
94915995 ATTTGGCATCCTTGCGTTGACAAG
64 ATTTGGCATCCTTGCGTTGACAAG
* ** * * *
94916019 GAGCAGATCGAAGACATAGCAGATTTGGCTTTCACG-TGTTTACGCTGAAGCAGATCTAAGATGA
1 GAGCAGATCGAAGACATAGCAGATCTAACCTTC-CGATGTTTACACTGAAGCAGATCCAAGATGA
94916083 TTTGGCATC
65 TTTGGCATC
94916092 TCTGTACTGT
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
87 25 0.40
88 1 0.02
89 36 0.57
90 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.27
Consensus pattern (87 bp):
GAGCAGATCGAAGACATAGCAGATCTAACCTTCCGATGTTTACACTGAAGCAGATCCAAGATGAT
TTGGCATCCTTGCGTTGACAAG
Found at i:94916236 original size:78 final size:78
Alignment explanation
Indices: 94916124--94916418 Score: 412
Period size: 78 Copynumber: 3.8 Consensus size: 78
94916114 CGAAGAAACA
** * * *
94916124 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
*
94916189 GCAGATCCAAGAT
66 GTAGATCCAAGAT
* * *
94916202 GATTTGGCATGTCTGTAGTAGACGGGGAGTAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
94916267 GTAGATCCAAGAT
66 GTAGATCCAAGAT
* * **
94916280 GATTTGGCATCTCTATATTAGACGGGGAGCCGATCAAAGACATAATAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAGCAGATCT-GACCTTCATTGA
*
94916344 AGTATATCCAAGAT
65 AGTAGATCCAAGAT
* ** *
94916358 GATTTGGCATCTCTGTATTAGACGGGAAGCAGATTGAAGATATAGCAGATCTGACCTTCAT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAGCAGATCTGACCTTCAT
94916419 GTGTTTACAT
Statistics
Matches: 190, Mismatches: 25, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
77 1 0.01
78 188 0.99
79 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
GTAGATCCAAGAT
Found at i:94916511 original size:45 final size:45
Alignment explanation
Indices: 94916358--94916631 Score: 277
Period size: 45 Copynumber: 6.1 Consensus size: 45
94916348 TATCCAAGAT
* *
94916358 GATTTGGCATCTCTGTATTAGACGGGAAGCAGATTGAAGATATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATA-A-CA
* * * * * ** * *
94916405 GATCTGACCT-TCATGTGTTTACATC--AAAGCAGATCCAAGATGACA
1 GATTTGGCATCTC-TGT-ATTAGA-CGGGGAGCAGATCGAAGATAACA
* * *
94916450 GATTTGGCATCTCTGTATTAGACGGGGACCAAATCGGAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* *
94916495 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGA-AGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* **
94916539 GGTTTGGTGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* * *
94916584 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
94916629 GAT
1 GAT
94916632 ATTGCCTTCC
Statistics
Matches: 185, Mismatches: 35, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
43 1 0.01
44 43 0.23
45 108 0.58
46 5 0.03
47 23 0.12
48 4 0.02
49 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
Found at i:94917008 original size:19 final size:19
Alignment explanation
Indices: 94916984--94917055 Score: 96
Period size: 18 Copynumber: 3.9 Consensus size: 19
94916974 ATAATCTTCA
*
94916984 ATGATATACTATCTTAGAT
1 ATGATATACAATCTTAGAT
94917003 ATG--ATACAATCTTAGAT
1 ATGATATACAATCTTAGAT
*
94917020 ATGAT-TGCAATCTTAGAT
1 ATGATATACAATCTTAGAT
*
94917038 ATGATATGCAATCTTAGA
1 ATGATATACAATCTTAGA
94917056 AGATATGATT
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
17 16 0.33
18 17 0.35
19 15 0.31
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.38
Consensus pattern (19 bp):
ATGATATACAATCTTAGAT
Found at i:94917009 original size:17 final size:17
Alignment explanation
Indices: 94916989--94917055 Score: 89
Period size: 17 Copynumber: 3.8 Consensus size: 17
94916979 CTTCAATGAT
*
94916989 ATACTATCTTAGATATG
1 ATACAATCTTAGATATG
94917006 ATACAATCTTAGATATG
1 ATACAATCTTAGATATG
*
94917023 ATTGCAATCTTAGATATG
1 A-TACAATCTTAGATATG
94917041 ATATGCAATCTTAGA
1 ATA--CAATCTTAGA
94917056 AGATATGATT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
17 18 0.41
18 16 0.36
19 10 0.23
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.37
Consensus pattern (17 bp):
ATACAATCTTAGATATG
Found at i:94917032 original size:18 final size:18
Alignment explanation
Indices: 94916994--94917055 Score: 99
Period size: 18 Copynumber: 3.4 Consensus size: 18
94916984 ATGATATACT
*
94916994 ATCTTAGATATGA-TACA
1 ATCTTAGATATGATTGCA
94917011 ATCTTAGATATGATTGCA
1 ATCTTAGATATGATTGCA
94917029 ATCTTAGATATGATATGCA
1 ATCTTAGATATGAT-TGCA
94917048 ATCTTAGA
1 ATCTTAGA
94917056 AGATATGATT
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
17 13 0.31
18 17 0.40
19 12 0.29
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (18 bp):
ATCTTAGATATGATTGCA
Found at i:94917344 original size:17 final size:17
Alignment explanation
Indices: 94917322--94917357 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
94917312 CATGTTTCCC
94917322 TAATTTTTT-ATATATTT
1 TAATTTTTTAATA-ATTT
94917339 TAATTTTTTAATAATTT
1 TAATTTTTTAATAATTT
94917356 TA
1 TA
94917358 GTATCATATC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 15 0.83
18 3 0.17
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
TAATTTTTTAATAATTT
Found at i:94918488 original size:88 final size:88
Alignment explanation
Indices: 94918339--94918514 Score: 343
Period size: 88 Copynumber: 2.0 Consensus size: 88
94918329 AAATTTCTAT
94918339 ATATTTTATGAAGTTTTCTACTCATACGTCTCAAGAAAAAATGATTAAGTAAAAATTATGTTTAT
1 ATATTTTATGAAGTTTTCTACTCATACGTCTCAAGAAAAAATGATTAAGTAAAAATTATGTTTAT
94918404 GCATGAAATTATAATATAAGGAA
66 GCATGAAATTATAATATAAGGAA
*
94918427 ATATTTTATGAAGTTTTCTCCTCATACGTCTCAAGAAAAAATGATTAAGTAAAAATTATGTTTAT
1 ATATTTTATGAAGTTTTCTACTCATACGTCTCAAGAAAAAATGATTAAGTAAAAATTATGTTTAT
94918492 GCATGAAATTATAATATAAGGAA
66 GCATGAAATTATAATATAAGGAA
94918515 TTAGAATGTC
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
88 87 1.00
ACGTcount: A:0.43, C:0.09, G:0.12, T:0.36
Consensus pattern (88 bp):
ATATTTTATGAAGTTTTCTACTCATACGTCTCAAGAAAAAATGATTAAGTAAAAATTATGTTTAT
GCATGAAATTATAATATAAGGAA
Found at i:94920908 original size:24 final size:24
Alignment explanation
Indices: 94920881--94920932 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
94920871 TTAGTAAGTC
*
94920881 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
94920905 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
94920929 AAAT
1 AAAT
94920933 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:94922878 original size:24 final size:24
Alignment explanation
Indices: 94922851--94922902 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
94922841 TTAGTAAGTC
*
94922851 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
94922875 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
94922899 AAAT
1 AAAT
94922903 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:94931812 original size:79 final size:81
Alignment explanation
Indices: 94931676--94931860 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
94931666 TTGAATGATG
*
94931676 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
94931740 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
94931755 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
94931817 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
94931835 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
94931861 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:94931874 original size:40 final size:40
Alignment explanation
Indices: 94931677--94931860 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
94931667 TGAATGATGT
* * * *
94931677 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
94931717 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
94931757 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
94931795 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
94931836 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
94931861 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:94931882 original size:79 final size:79
Alignment explanation
Indices: 94931677--94931893 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
94931667 TGAATGATGT
** * * * **
94931677 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
94931740 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
94931757 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
94931822 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
94931836 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
94931894 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:94951381 original size:41 final size:40
Alignment explanation
Indices: 94951336--94951471 Score: 215
Period size: 41 Copynumber: 3.4 Consensus size: 40
94951326 TTCTGAATCG
*
94951336 ATGAAAAGGTTGAAAAGGATGTTATCCGAAAA-AATGTATCA
1 ATGAAAAGGTTGAAAAGGATGTTATCCGAAAAGGA--TATCA
94951377 ATGAAAAGGTTGAAAAGGATGTTATCCGAAAAGGATATCA
1 ATGAAAAGGTTGAAAAGGATGTTATCCGAAAAGGATATCA
94951417 TATGAAAAGGTTG--AAGGATGTTATCCGAAAAGGATATCA
1 -ATGAAAAGGTTGAAAAGGATGTTATCCGAAAAGGATATCA
94951456 ATGAAAAGGTTGAAAA
1 ATGAAAAGGTTGAAAA
94951472 TGATAACAAT
Statistics
Matches: 90, Mismatches: 1, Indels: 9
0.90 0.01 0.09
Matches are distributed among these distances:
38 12 0.13
39 26 0.29
40 7 0.08
41 44 0.49
42 1 0.01
ACGTcount: A:0.46, C:0.07, G:0.24, T:0.24
Consensus pattern (40 bp):
ATGAAAAGGTTGAAAAGGATGTTATCCGAAAAGGATATCA
Found at i:94951476 original size:24 final size:24
Alignment explanation
Indices: 94951443--94951489 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
94951433 GATGTTATCC
*
94951443 GAAAAGGATATCAATGAAAAGGTT
1 GAAAAGGATAACAATGAAAAGGTT
*
94951467 GAAAATGATAACAATGAAAAGGT
1 GAAAAGGATAACAATGAAAAGGT
94951490 CGATATCTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.53, C:0.04, G:0.23, T:0.19
Consensus pattern (24 bp):
GAAAAGGATAACAATGAAAAGGTT
Found at i:94951486 original size:39 final size:38
Alignment explanation
Indices: 94951372--94951488 Score: 110
Period size: 39 Copynumber: 3.0 Consensus size: 38
94951362 CGAAAAAATG
* ***
94951372 TATCAATGAAAAGGTTGAAAAGGATGTTATCCGAAAAGGA
1 TATCAATGAAAAGGTTGAAAATGATAACAT--GAAAAGGA
* * * *
94951412 TATCATATGAAAAGGTTGAAGGATGTTATC-CGAAAAGGA
1 TATCA-ATGAAAAGGTTGAA-AATGATAACATGAAAAGGA
94951451 TATCAATGAAAAGGTTGAAAATGATAACAATGAAAAGG
1 TATCAATGAAAAGGTTGAAAATGATAAC-ATGAAAAGG
94951489 TCGATATCTC
Statistics
Matches: 63, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
37 6 0.10
38 14 0.22
39 20 0.32
40 5 0.08
41 14 0.22
42 4 0.06
ACGTcount: A:0.46, C:0.07, G:0.24, T:0.23
Consensus pattern (38 bp):
TATCAATGAAAAGGTTGAAAATGATAACATGAAAAGGA
Found at i:94960218 original size:21 final size:21
Alignment explanation
Indices: 94960192--94960235 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
94960182 TTGACCAAGC
94960192 ATGATGTTTTAAGTATGTAAA
1 ATGATGTTTTAAGTATGTAAA
94960213 ATGATGTTTTAAGTATGTAAA
1 ATGATGTTTTAAGTATGTAAA
94960234 AT
1 AT
94960236 ATGATATGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.18, T:0.43
Consensus pattern (21 bp):
ATGATGTTTTAAGTATGTAAA
Found at i:94963909 original size:12 final size:12
Alignment explanation
Indices: 94963876--94963916 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
94963866 ACTACCAAAC
94963876 ATTTAATCACA-
1 ATTTAATCACAT
94963887 ATGTTAA-CACAT
1 AT-TTAATCACAT
94963899 ATTTAATCACAT
1 ATTTAATCACAT
*
94963911 AATTAA
1 ATTTAA
94963917 CCATGAAATC
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
11 10 0.38
12 16 0.62
ACGTcount: A:0.46, C:0.15, G:0.02, T:0.37
Consensus pattern (12 bp):
ATTTAATCACAT
Found at i:94965362 original size:40 final size:40
Alignment explanation
Indices: 94965304--94965421 Score: 155
Period size: 40 Copynumber: 3.0 Consensus size: 40
94965294 ATTATGTTTG
* *
94965304 GCACTTAGTGTGCATATTGAAATAGCTTTGGCTATATAAA
1 GCACTTAGTGTGCGTATTGAAATAGCTTAGGCTATATAAA
* *
94965344 GCACTTAGTGTGCGTATTGAGATAACTTAGGCTATATAAA
1 GCACTTAGTGTGCGTATTGAAATAGCTTAGGCTATATAAA
* * * * *
94965384 GCAATTAGTGTGCGAATAGGAATAGCTTCGGCTATATA
1 GCACTTAGTGTGCGTATTGAAATAGCTTAGGCTATATA
94965422 TATATATAGC
Statistics
Matches: 67, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 67 1.00
ACGTcount: A:0.32, C:0.13, G:0.23, T:0.32
Consensus pattern (40 bp):
GCACTTAGTGTGCGTATTGAAATAGCTTAGGCTATATAAA
Found at i:94968682 original size:10 final size:10
Alignment explanation
Indices: 94968669--94968717 Score: 57
Period size: 10 Copynumber: 4.9 Consensus size: 10
94968659 TTTATTTTCT
94968669 TTTATCTTTA
1 TTTATCTTTA
94968679 TTTATCTTTA
1 TTTATCTTTA
*
94968689 GTTT-TATTTA
1 -TTTATCTTTA
94968699 TTTAT-TTGTA
1 TTTATCTT-TA
94968709 TTTATCTTT
1 TTTATCTTT
94968718 TAGAATTTCA
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
9 5 0.15
10 24 0.71
11 5 0.15
ACGTcount: A:0.18, C:0.06, G:0.04, T:0.71
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:94969443 original size:17 final size:18
Alignment explanation
Indices: 94969411--94969444 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
94969401 TTTTTTCTAT
*
94969411 TTTAATTTATGCAATTTA
1 TTTAATTTACGCAATTTA
94969429 TTTAATTT-CGCAATTT
1 TTTAATTTACGCAATTT
94969445 CAATTCACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.29, C:0.09, G:0.06, T:0.56
Consensus pattern (18 bp):
TTTAATTTACGCAATTTA
Found at i:94972434 original size:19 final size:19
Alignment explanation
Indices: 94972407--94972445 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
94972397 TGATTCAATC
94972407 TTCAATTCA-ATTACTTTTG
1 TTCAATTCAGA-TACTTTTG
*
94972426 TTCAGTTCAGATACTTTTG
1 TTCAATTCAGATACTTTTG
94972445 T
1 T
94972446 ATCCAATACA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 17 0.94
20 1 0.06
ACGTcount: A:0.23, C:0.15, G:0.10, T:0.51
Consensus pattern (19 bp):
TTCAATTCAGATACTTTTG
Found at i:94986360 original size:46 final size:48
Alignment explanation
Indices: 94986288--94986407 Score: 154
Period size: 48 Copynumber: 2.5 Consensus size: 48
94986278 GACAGGACAG
* * * *
94986288 GACAGAAATGAGCCATGTAAGTCCATATCA-GT-TATATGGCTTTGGA
1 GACAGGAATGATCCATGTAAGTCCATATCATATATATATGGCATTGGA
* *
94986334 GACAGGAATGATCCATGTAAGCCCATATTATATATATATGGCATTGGA
1 GACAGGAATGATCCATGTAAGTCCATATCATATATATATGGCATTGGA
* *
94986382 GACAGGAATAATTCATGTAAGTCCAT
1 GACAGGAATGATCCATGTAAGTCCAT
94986408 GTCGAAGACA
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
46 26 0.41
47 1 0.02
48 36 0.57
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (48 bp):
GACAGGAATGATCCATGTAAGTCCATATCATATATATATGGCATTGGA
Found at i:94990194 original size:28 final size:28
Alignment explanation
Indices: 94990154--94990232 Score: 113
Period size: 28 Copynumber: 2.8 Consensus size: 28
94990144 GCAGTTAAAT
* *
94990154 ATGGCACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
**
94990182 ATGGCACTTAGTGTGCGCGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
94990210 ATGACACTTAGTGTGCGAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
94990233 CGAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.28
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:94995093 original size:40 final size:40
Alignment explanation
Indices: 94995040--94995164 Score: 142
Period size: 40 Copynumber: 3.1 Consensus size: 40
94995030 CGTTTGAATG
* * *
94995040 AAAAACACGGCTAAAGAACAAGCATTAGCGGCGCTTTTTA
1 AAAAACACCGCTAAAGATCAAGTATTAGCGGCGCTTTTTA
* * * * **
94995080 AAAAACGCCGCTAAAGATCGAGTATTAGCGGTGCTGTACA
1 AAAAACACCGCTAAAGATCAAGTATTAGCGGCGCTTTTTA
* * *
94995120 AAAAACACCGCTAAAGATCAAGTATTAGCAGCACTTTTTT
1 AAAAACACCGCTAAAGATCAAGTATTAGCGGCGCTTTTTA
94995160 AAAAA
1 AAAAA
94995165 TGTCGTTATC
Statistics
Matches: 67, Mismatches: 18, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
40 67 1.00
ACGTcount: A:0.41, C:0.19, G:0.18, T:0.22
Consensus pattern (40 bp):
AAAAACACCGCTAAAGATCAAGTATTAGCGGCGCTTTTTA
Found at i:94995346 original size:40 final size:40
Alignment explanation
Indices: 94995284--94995369 Score: 138
Period size: 40 Copynumber: 2.1 Consensus size: 40
94995274 AGATCGAGTA
*
94995284 TTAGCGGCACTTTTTAAGAAACGCCGCTATAAGTACACCT
1 TTAGCGGCACTTTTTAAGAAACGCCACTATAAGTACACCT
*
94995324 TTAGCGGCACTTTTTGAA-AAACGCCACTATATGTACACCT
1 TTAGCGGCACTTTTT-AAGAAACGCCACTATAAGTACACCT
94995364 TTAGCG
1 TTAGCG
94995370 TTGTTTTTCA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
40 41 0.95
41 2 0.05
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.29
Consensus pattern (40 bp):
TTAGCGGCACTTTTTAAGAAACGCCACTATAAGTACACCT
Found at i:94998212 original size:26 final size:26
Alignment explanation
Indices: 94998181--94998262 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
94998171 TGAAATGCCC
94998181 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
94998207 ATCATGGAACATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
94998233 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
94998259 ATCA
1 ATCA
94998263 ATTTGTACCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:94998884 original size:21 final size:21
Alignment explanation
Indices: 94998838--94998889 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 21
94998828 TTAATTATCA
* *
94998838 TTATAGTTTAGGGTTTATGAT
1 TTATGGTTAAGGGTTTATGAT
*
94998859 ATATGGTTAAGGGTTTAATG-T
1 TTATGGTTAAGGGTTT-ATGAT
94998880 TTATGAGTTA
1 TTATG-GTTA
94998890 CTATTTTAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
21 18 0.72
22 7 0.28
ACGTcount: A:0.27, C:0.00, G:0.25, T:0.48
Consensus pattern (21 bp):
TTATGGTTAAGGGTTTATGAT
Found at i:94998937 original size:15 final size:15
Alignment explanation
Indices: 94998901--94998933 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
94998891 TATTTTAAGT
*
94998901 TTTATGGATTATAGG
1 TTTAGGGATTATAGG
94998916 TTTAGGGATTAT-GG
1 TTTAGGGATTATAGG
94998930 TTTA
1 TTTA
94998934 AGGGTGATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.48
Consensus pattern (15 bp):
TTTAGGGATTATAGG
Found at i:94999023 original size:14 final size:14
Alignment explanation
Indices: 94999004--94999058 Score: 65
Period size: 14 Copynumber: 3.9 Consensus size: 14
94998994 ATGGTCAGGG
*
94999004 TTTATGTTTTAGGA
1 TTTATGGTTTAGGA
*
94999018 TTTATGGTTTAGGG
1 TTTATGGTTTAGGA
*
94999032 TTTATGGATTAGGA
1 TTTATGGTTTAGGA
*
94999046 GTTTAGGGTTTAG
1 -TTTATGGTTTAG
94999059 ATTAATTAGT
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
14 24 0.71
15 10 0.29
ACGTcount: A:0.20, C:0.00, G:0.31, T:0.49
Consensus pattern (14 bp):
TTTATGGTTTAGGA
Found at i:94999033 original size:7 final size:7
Alignment explanation
Indices: 94998952--94999058 Score: 58
Period size: 7 Copynumber: 15.1 Consensus size: 7
94998942 TTAAGGGTTG
94998952 GGGTTTA
1 GGGTTTA
*
94998959 AGGTTTA
1 GGGTTTA
94998966 GGTGTTCT-
1 GG-GTT-TA
*
94998974 GGGTTAA
1 GGGTTTA
94998981 GGG-TTA
1 GGGTTTA
*
94998987 GTGGTTCA
1 G-GGTTTA
* *
94998995 TGG-TCA
1 GGGTTTA
94999001 GGGTTTA
1 GGGTTTA
* *
94999008 TGTTTTA
1 GGGTTTA
*
94999015 GGATTTA
1 GGGTTTA
*
94999022 TGGTTTA
1 GGGTTTA
94999029 GGGTTTA
1 GGGTTTA
* *
94999036 TGGATTA
1 GGGTTTA
94999043 GGAGTTTA
1 GG-GTTTA
94999051 GGGTTTA
1 GGGTTTA
94999058 G
1 G
94999059 ATTAATTAGT
Statistics
Matches: 74, Mismatches: 19, Indels: 14
0.69 0.18 0.13
Matches are distributed among these distances:
6 8 0.11
7 52 0.70
8 13 0.18
9 1 0.01
ACGTcount: A:0.18, C:0.03, G:0.36, T:0.43
Consensus pattern (7 bp):
GGGTTTA
Found at i:94999234 original size:15 final size:15
Alignment explanation
Indices: 94999214--94999261 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
94999204 ACTGTTTTAA
*
94999214 GGTTTATGGATTATG
1 GGTTTAGGGATTATG
94999229 GGTTTAGGGATTAT-
1 GGTTTAGGGATTATG
* * *
94999243 GATTTAGGGTTTAAG
1 GGTTTAGGGATTATG
94999258 GGTT
1 GGTT
94999262 GAGGTTTAAG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
14 11 0.41
15 16 0.59
ACGTcount: A:0.21, C:0.00, G:0.35, T:0.44
Consensus pattern (15 bp):
GGTTTAGGGATTATG
Found at i:94999234 original size:22 final size:21
Alignment explanation
Indices: 94999210--94999258 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
94999200 AGTTACTGTT
*
94999210 TTAAGGTTTATGGA-TTATGGGT
1 TTAAGGATTAT-GATTTA-GGGT
*
94999232 TTAGGGATTATGATTTAGGGT
1 TTAAGGATTATGATTTAGGGT
94999253 TTAAGG
1 TTAAGG
94999259 GTTGAGGTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 11 0.48
22 12 0.52
ACGTcount: A:0.24, C:0.00, G:0.33, T:0.43
Consensus pattern (21 bp):
TTAAGGATTATGATTTAGGGT
Found at i:94999291 original size:21 final size:21
Alignment explanation
Indices: 94999253--94999292 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
94999243 GATTTAGGGT
*
94999253 TTAAGGGTTGAGGTTTAAGGC
1 TTAAGGGTTGAGGGTTAAGGC
94999274 TTAAGGGTT-AGGAGTTAAG
1 TTAAGGGTTGAGG-GTTAAG
94999293 TGTTAGGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 3 0.18
21 14 0.82
ACGTcount: A:0.28, C:0.03, G:0.38, T:0.33
Consensus pattern (21 bp):
TTAAGGGTTGAGGGTTAAGGC
Found at i:94999346 original size:14 final size:14
Alignment explanation
Indices: 94999158--94999346 Score: 55
Period size: 14 Copynumber: 13.4 Consensus size: 14
94999148 TATCATTATA
*
94999158 GTTTAGGGTTTATG
1 GTTTAGGGTTTAGG
*
94999172 GTTTAAGGTTTAGG
1 GTTTAGGGTTTAGG
** * *
94999186 GTTTAAAGTGTATGA
1 GTTTAGGGTTTA-GG
* * *
94999201 G-TTACTGTTTTAAG
1 GTTTA-GGGTTTAGG
* *
94999215 GTTTATGGATTATGG
1 GTTTAGGGTTTA-GG
* *
94999230 GTTTAGGGATTATG
1 GTTTAGGGTTTAGG
*
94999244 ATTTAGGGTTTAAGG
1 GTTTAGGGTTT-AGG
*
94999259 GTTGA-GGTTTAAGG
1 GTTTAGGGTTT-AGG
* *
94999273 CTTAAGGG-TTAGG
1 GTTTAGGGTTTAGG
* *
94999286 AGTTAAGTG-TTAGG
1 -GTTTAGGGTTTAGG
* *
94999300 TTTTTAGGGTTTAGA
1 -GTTTAGGGTTTAGG
* * *
94999315 GATTA-TGTTTATG
1 GTTTAGGGTTTAGG
*
94999328 ATTTAGGGTTTAGG
1 GTTTAGGGTTTAGG
94999342 GTTTA
1 GTTTA
94999347 AAGGATAGGG
Statistics
Matches: 126, Mismatches: 40, Indels: 18
0.68 0.22 0.10
Matches are distributed among these distances:
13 11 0.09
14 84 0.67
15 31 0.25
ACGTcount: A:0.23, C:0.01, G:0.32, T:0.44
Consensus pattern (14 bp):
GTTTAGGGTTTAGG
Found at i:94999806 original size:31 final size:31
Alignment explanation
Indices: 94999762--94999822 Score: 72
Period size: 31 Copynumber: 2.0 Consensus size: 31
94999752 ATGTGTATGA
*
94999762 TTAAATCAAAATTA-AAGTTTCA-ACTATACAT
1 TTAAACCAAAATTAGAA-TTTCACA-TATACAT
*
94999793 TTAAACCACAATTAGAATTTCACATATACA
1 TTAAACCAAAATTAGAATTTCACATATACA
94999823 ATTACACATT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
31 23 0.88
32 3 0.12
ACGTcount: A:0.48, C:0.16, G:0.03, T:0.33
Consensus pattern (31 bp):
TTAAACCAAAATTAGAATTTCACATATACAT
Found at i:95001656 original size:49 final size:50
Alignment explanation
Indices: 95001590--95001735 Score: 195
Period size: 51 Copynumber: 2.9 Consensus size: 50
95001580 GTAGCCAAAC
* * *
95001590 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACGTGCGACCAA-T
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAGT
* * * *
95001639 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAAGT
* *
95001690 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACC
95001736 TAGCTACATA
Statistics
Matches: 82, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
49 38 0.46
50 4 0.05
51 40 0.49
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (50 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAGT
Found at i:95002548 original size:30 final size:30
Alignment explanation
Indices: 95002514--95002574 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
95002504 TCCTTAACTC
95002514 AAACTTTTGAAAATTTACAATTTTGCCCCT
1 AAACTTTTGAAAATTTACAATTTTGCCCCT
* * *
95002544 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGAAAATTTACAATTTTGCCCCT
95002574 A
1 A
95002575 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.41
Consensus pattern (30 bp):
AAACTTTTGAAAATTTACAATTTTGCCCCT
Found at i:95003690 original size:7 final size:7
Alignment explanation
Indices: 95003652--95003676 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
95003642 AAACTTAAAA
95003652 ATTTAAT
1 ATTTAAT
95003659 ATTTAAT
1 ATTTAAT
95003666 ATTTAAT
1 ATTTAAT
95003673 ATTT
1 ATTT
95003677 TAGTTCATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (7 bp):
ATTTAAT
Found at i:95003802 original size:16 final size:18
Alignment explanation
Indices: 95003773--95003814 Score: 52
Period size: 16 Copynumber: 2.4 Consensus size: 18
95003763 AAAAAAATAG
95003773 AAAAAATATGTTAAAAAT
1 AAAAAATATGTTAAAAAT
*
95003791 AAAAAAT-T-TTAAAATT
1 AAAAAATATGTTAAAAAT
*
95003807 AAACAATA
1 AAAAAATA
95003815 GTACAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 13 0.62
17 1 0.05
18 7 0.33
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (18 bp):
AAAAAATATGTTAAAAAT
Found at i:95007354 original size:15 final size:16
Alignment explanation
Indices: 95007334--95007364 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
95007324 GTTTTTGTCT
95007334 TATATATGAT-TAAAA
1 TATATATGATCTAAAA
95007349 TATATATGATCTAAAA
1 TATATATGATCTAAAA
95007365 GCAAGAGAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.52, C:0.03, G:0.06, T:0.39
Consensus pattern (16 bp):
TATATATGATCTAAAA
Found at i:95008692 original size:12 final size:12
Alignment explanation
Indices: 95008675--95008708 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
95008665 TTTGAAGTTT
95008675 AAATTTTAATGG
1 AAATTTTAATGG
95008687 AAATTTTAATGG
1 AAATTTTAATGG
95008699 AAATTTTAAT
1 AAATTTTAAT
95008709 TTAATTAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (12 bp):
AAATTTTAATGG
Found at i:95008931 original size:43 final size:43
Alignment explanation
Indices: 95008876--95008958 Score: 105
Period size: 43 Copynumber: 1.9 Consensus size: 43
95008866 TTTAGTTGCG
* * * * *
95008876 TTTTTAGGAAAAGCGCCGCTAAAGGTCCTGATCTTTAGCGACA
1 TTTTTAGGAAAAGCACCACTAAAGATCATGACCTTTAGCGACA
95008919 TTTTT-GGAAAAAGCACCACTAAAGATCATGACCTTTAGCG
1 TTTTTAGG-AAAAGCACCACTAAAGATCATGACCTTTAGCG
95008959 GCCTCTTTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 2 0.06
43 32 0.94
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.28
Consensus pattern (43 bp):
TTTTTAGGAAAAGCACCACTAAAGATCATGACCTTTAGCGACA
Found at i:95009271 original size:12 final size:12
Alignment explanation
Indices: 95009254--95009294 Score: 64
Period size: 12 Copynumber: 3.3 Consensus size: 12
95009244 ATAACATTAA
*
95009254 TAATATCCATAC
1 TAATATACATAC
95009266 TAATATACATAC
1 TAATATACATAC
95009278 ATAATATACATAC
1 -TAATATACATAC
95009291 TAAT
1 TAAT
95009295 TTATCAATTG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
12 15 0.56
13 12 0.44
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34
Consensus pattern (12 bp):
TAATATACATAC
Found at i:95009275 original size:25 final size:25
Alignment explanation
Indices: 95009217--95009294 Score: 84
Period size: 31 Copynumber: 2.9 Consensus size: 25
95009207 TGTCACATAC
* *
95009217 CATACATAACATACACACTAATATA
1 CATACATAATATACATACTAATATA
95009242 TCATAACATTAATAATATCCATACTAATATA
1 -CAT-ACA-TAAT-ATA--CATACTAATATA
95009273 CATACATAATATACATACTAAT
1 CATACATAATATACATACTAAT
95009295 TTATCAATTG
Statistics
Matches: 45, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
25 9 0.20
26 3 0.07
27 6 0.13
28 7 0.16
29 6 0.13
30 3 0.07
31 11 0.24
ACGTcount: A:0.50, C:0.19, G:0.00, T:0.31
Consensus pattern (25 bp):
CATACATAATATACATACTAATATA
Found at i:95009644 original size:43 final size:43
Alignment explanation
Indices: 95009493--95009658 Score: 154
Period size: 43 Copynumber: 3.9 Consensus size: 43
95009483 CGATATAGAT
* * * * *
95009493 AACGCCGCTAAAAGTCATGGCCTTTAGCGGCGATTTCCCCACA
1 AACGCCGCTAAAAGTCATGACCTTTAGCGACGCTTTTCCCAAA
* * * * *
95009536 AACGCCGCTAAAGGTCATGGCCTTTACCGACACTTTT-CCTAA
1 AACGCCGCTAAAAGTCATGACCTTTAGCGACGCTTTTCCCAAA
* * * * *
95009578 AACACCACTAAAAATAATAACCTTTAGCGACGCTTTTCCCAAA
1 AACGCCGCTAAAAGTCATGACCTTTAGCGACGCTTTTCCCAAA
* * * *
95009621 AACGCCCCTAAAAGTTATGACCTTTAACAACGCTTTTC
1 AACGCCGCTAAAAGTCATGACCTTTAGCGACGCTTTTC
95009659 TTAAAAATAC
Statistics
Matches: 97, Mismatches: 25, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
42 31 0.32
43 66 0.68
ACGTcount: A:0.31, C:0.30, G:0.14, T:0.25
Consensus pattern (43 bp):
AACGCCGCTAAAAGTCATGACCTTTAGCGACGCTTTTCCCAAA
Found at i:95009665 original size:43 final size:43
Alignment explanation
Indices: 95009497--95009683 Score: 133
Period size: 43 Copynumber: 4.4 Consensus size: 43
95009487 ATAGATAACG
* * * * * * * * *
95009497 CCGCTAAAAGTCATGGCCTTTAGCGGCGATTTCCCCACAAACG
1 CCGCTAAAAGTTATGACCTTTAACGACGCTTTTCCTAAAAACA
* * * * *
95009540 CCGCTAAAGGTCATGGCCTTTACCGACACTTTTCCT-AAAACA
1 CCGCTAAAAGTTATGACCTTTAACGACGCTTTTCCTAAAAACA
* * * * * * *
95009582 CCACTAAAAATAATAACCTTTAGCGACGCTTTTCCCAAAAACG
1 CCGCTAAAAGTTATGACCTTTAACGACGCTTTTCCTAAAAACA
* * * *
95009625 CCCCTAAAAGTTATGACCTTTAACAACGCTTTTCTTAAAAATA
1 CCGCTAAAAGTTATGACCTTTAACGACGCTTTTCCTAAAAACA
*
95009668 CCGCTAAAGGTTATGA
1 CCGCTAAAAGTTATGA
95009684 AATTTAAAAA
Statistics
Matches: 112, Mismatches: 31, Indels: 2
0.77 0.21 0.01
Matches are distributed among these distances:
42 31 0.28
43 81 0.72
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.26
Consensus pattern (43 bp):
CCGCTAAAAGTTATGACCTTTAACGACGCTTTTCCTAAAAACA
Found at i:95009849 original size:19 final size:19
Alignment explanation
Indices: 95009804--95009850 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
95009794 ATTAAATTAA
*
95009804 AATAAAAATAAAAATATAG
1 AATAAAAATAAAAATAAAG
* *
95009823 AATCAAAACT-AAAATAAAT
1 AAT-AAAAATAAAAATAAAG
95009842 AATAAAAAT
1 AATAAAAAT
95009851 TAGATTAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 5 0.22
19 13 0.57
20 5 0.22
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.21
Consensus pattern (19 bp):
AATAAAAATAAAAATAAAG
Found at i:95009874 original size:31 final size:32
Alignment explanation
Indices: 95009794--95009874 Score: 100
Period size: 31 Copynumber: 2.6 Consensus size: 32
95009784 AAAATTTTCT
95009794 ATTAAAT-TAAAATAAA-AATAAAAATATAGA
1 ATTAAATATAAAATAAATAATAAAAATATAGA
*
95009824 ATCAAA-ACTAAAATAAATAATAAAAAT-TAG-
1 ATTAAATA-TAAAATAAATAATAAAAATATAGA
95009854 ATTAAATATAAATATAAATAA
1 ATTAAATATAAA-ATAAATAA
95009875 AATACAGCAA
Statistics
Matches: 44, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
30 14 0.32
31 21 0.48
32 9 0.20
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.27
Consensus pattern (32 bp):
ATTAAATATAAAATAAATAATAAAAATATAGA
Found at i:95015132 original size:17 final size:18
Alignment explanation
Indices: 95015099--95015132 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
95015089 TATTTCTTAA
95015099 ATAATTTAAACTATATTG
1 ATAATTTAAACTATATTG
*
95015117 ATAATTTTAA-TATATT
1 ATAATTTAAACTATATT
95015133 AAAACAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (18 bp):
ATAATTTAAACTATATTG
Found at i:95015565 original size:7 final size:7
Alignment explanation
Indices: 95015555--95015646 Score: 55
Period size: 7 Copynumber: 13.0 Consensus size: 7
95015545 GTAAAACAAA
*
95015555 AAACCAC
1 AAACCAT
95015562 AAACTC-T
1 AAAC-CAT
95015569 AAACCAT
1 AAACCAT
95015576 AAACCAT
1 AAACCAT
*
95015583 AAACCAA
1 AAACCAT
95015590 AAACTC-T
1 AAAC-CAT
*
95015597 AAACCAA
1 AAACCAT
*
95015604 AAACAAT
1 AAACCAT
95015611 AAA-CAT
1 AAACCAT
* *
95015617 TATCTCAT
1 AAAC-CAT
*
95015625 AAACCCT
1 AAACCAT
*
95015632 AAATCCCT
1 AAA-CCAT
95015640 AAACCAT
1 AAACCAT
95015647 GGACATTAAA
Statistics
Matches: 65, Mismatches: 13, Indels: 14
0.71 0.14 0.15
Matches are distributed among these distances:
6 5 0.08
7 46 0.71
8 14 0.22
ACGTcount: A:0.53, C:0.29, G:0.00, T:0.17
Consensus pattern (7 bp):
AAACCAT
Found at i:95015572 original size:14 final size:14
Alignment explanation
Indices: 95015555--95015607 Score: 72
Period size: 14 Copynumber: 3.8 Consensus size: 14
95015545 GTAAAACAAA
*
95015555 AAACCACAAACTCT
1 AAACCAAAAACTCT
*
95015569 AAACCATAAAC-CAT
1 AAACCAAAAACTC-T
95015583 AAACCAAAAACTCT
1 AAACCAAAAACTCT
95015597 AAACCAAAAAC
1 AAACCAAAAAC
95015608 AATAAACATT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
13 1 0.03
14 33 0.94
15 1 0.03
ACGTcount: A:0.58, C:0.30, G:0.00, T:0.11
Consensus pattern (14 bp):
AAACCAAAAACTCT
Found at i:95015579 original size:28 final size:28
Alignment explanation
Indices: 95015547--95015614 Score: 100
Period size: 28 Copynumber: 2.4 Consensus size: 28
95015537 TACTAACTGT
* *
95015547 AAAACAAAAAACCACAAACTCTAAACCA
1 AAAACAATAAACCAAAAACTCTAAACCA
* *
95015575 TAAACCATAAACCAAAAACTCTAAACCA
1 AAAACAATAAACCAAAAACTCTAAACCA
95015603 AAAACAATAAAC
1 AAAACAATAAAC
95015615 ATTATCTCAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.63, C:0.26, G:0.00, T:0.10
Consensus pattern (28 bp):
AAAACAATAAACCAAAAACTCTAAACCA
Found at i:95015613 original size:14 final size:14
Alignment explanation
Indices: 95015547--95015614 Score: 64
Period size: 14 Copynumber: 4.9 Consensus size: 14
95015537 TACTAACTGT
*
95015547 AAAACAAAAAACCA
1 AAAACAATAAACCA
* **
95015561 CAAACTCTAAACCA
1 AAAACAATAAACCA
* *
95015575 TAAACCATAAACCA
1 AAAACAATAAACCA
**
95015589 AAAACTCTAAACCA
1 AAAACAATAAACCA
95015603 AAAACAATAAAC
1 AAAACAATAAAC
95015615 ATTATCTCAT
Statistics
Matches: 42, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
14 42 1.00
ACGTcount: A:0.63, C:0.26, G:0.00, T:0.10
Consensus pattern (14 bp):
AAAACAATAAACCA
Found at i:95016249 original size:14 final size:15
Alignment explanation
Indices: 95016221--95016258 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
95016211 TACCATATTT
95016221 ACCTCTAAACCCCAA
1 ACCTCTAAACCCCAA
*
95016236 ACCTC-AAACTCCAA
1 ACCTCTAAACCCCAA
95016250 ACC-CTAAAC
1 ACCTCTAAAC
95016259 TCTAGGCCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 1 0.05
14 15 0.71
15 5 0.24
ACGTcount: A:0.42, C:0.45, G:0.00, T:0.13
Consensus pattern (15 bp):
ACCTCTAAACCCCAA
Found at i:95016390 original size:40 final size:41
Alignment explanation
Indices: 95016315--95016536 Score: 306
Period size: 41 Copynumber: 5.5 Consensus size: 41
95016305 TTTTGTGGCA
95016315 TTTTTCAAAAAGCGCCGCTAAAAGCTCGATCTATAGCGGCG
1 TTTTTCAAAAAGCGCCGCTAAAAGCTCGATCTATAGCGGCG
*
95016356 TTTTTCAAAAAGCGCCGCT-AAAGCTCGATCTATAGCGGTG
1 TTTTTCAAAAAGCGCCGCTAAAAGCTCGATCTATAGCGGCG
* ** *
95016396 TTTTTCAAAAAACGCCGCTAAAAGCTCGATCTATAGTTGTG
1 TTTTTCAAAAAGCGCCGCTAAAAGCTCGATCTATAGCGGCG
* * *
95016437 TTTCTCCAAAAGCGCCGCTAAAACCTCGATCTATAGCGGCG
1 TTTTTCAAAAAGCGCCGCTAAAAGCTCGATCTATAGCGGCG
* * * *
95016478 TTTTTCCAAAAGTG-CGCTAAAACCTCGACCTATAGCGGCG
1 TTTTTCAAAAAGCGCCGCTAAAAGCTCGATCTATAGCGGCG
*
95016518 TTTTTC-CAAAGCGCCGCTA
1 TTTTTCAAAAAGCGCCGCTA
95016537 TTGTTCAGTT
Statistics
Matches: 163, Mismatches: 16, Indels: 5
0.89 0.09 0.03
Matches are distributed among these distances:
39 5 0.03
40 74 0.45
41 84 0.52
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.27
Consensus pattern (41 bp):
TTTTTCAAAAAGCGCCGCTAAAAGCTCGATCTATAGCGGCG
Found at i:95016412 original size:81 final size:80
Alignment explanation
Indices: 95016315--95016536 Score: 302
Period size: 81 Copynumber: 2.8 Consensus size: 80
95016305 TTTTGTGGCA
*
95016315 TTTTTCAAAAAGCGCCGCTAAAAGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCCGCTAAAGC
1 TTTTTCAAAAAGCGCCGCTAAAAGCTCGATCTATAGCGGCGTTTTTC-AAAAGCGCCGCTAAACC
*
95016380 TCGATCTATAGCGGTG
65 TCGATCTATAGCGGCG
* ** * *
95016396 TTTTTCAAAAAACGCCGCTAAAAGCTCGATCTATAGTTGTGTTTCTCCAAAAGCGCCGCTAAAAC
1 TTTTTCAAAAAGCGCCGCTAAAAGCTCGATCTATAGCGGCGTTT-TTCAAAAGCGCCGCT-AAAC
95016461 CTCGATCTATAGCGGCG
64 CTCGATCTATAGCGGCG
* * * * *
95016478 TTTTTCCAAAAGTG-CGCTAAAACCTCGACCTATAGCGGCGTTTTTCCAAAGCGCCGCTA
1 TTTTTCAAAAAGCGCCGCTAAAAGCTCGATCTATAGCGGCGTTTTTCAAAAGCGCCGCTA
95016537 TTGTTCAGTT
Statistics
Matches: 122, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
79 1 0.01
80 13 0.11
81 76 0.62
82 32 0.26
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.27
Consensus pattern (80 bp):
TTTTTCAAAAAGCGCCGCTAAAAGCTCGATCTATAGCGGCGTTTTTCAAAAGCGCCGCTAAACCT
CGATCTATAGCGGCG
Found at i:95016586 original size:41 final size:40
Alignment explanation
Indices: 95016529--95016641 Score: 127
Period size: 41 Copynumber: 2.8 Consensus size: 40
95016519 TTTTCCAAAG
* *
95016529 CGCCGCTATTGTTCAGTTTTTAGCGGCGTTTGGACCAAAAA
1 CGCCGCTATTGCTCAGTTTTTA-CGGCGTTTAGACCAAAAA
* * *
95016570 TGCCGCTATTGCTCAGTTTATAACGGCGCTTAGACCAAAAA
1 CGCCGCTATTGCTCAGTTT-TTACGGCGTTTAGACCAAAAA
* * *
95016611 CGCTGCTATTACTTAGTTTTTTACGGCGTTT
1 CGCCGCTATTGCTCAG-TTTTTACGGCGTTT
95016642 TTTTGCAAAC
Statistics
Matches: 59, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
41 54 0.92
42 5 0.08
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.35
Consensus pattern (40 bp):
CGCCGCTATTGCTCAGTTTTTACGGCGTTTAGACCAAAAA
Found at i:95016765 original size:18 final size:17
Alignment explanation
Indices: 95016744--95016779 Score: 63
Period size: 18 Copynumber: 2.1 Consensus size: 17
95016734 AAAAAATAAC
95016744 AATACAATATATAATACA
1 AATACAATATATAA-ACA
95016762 AATACAATATATAAACA
1 AATACAATATATAAACA
95016779 A
1 A
95016780 CGAAGACACT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.64, C:0.11, G:0.00, T:0.25
Consensus pattern (17 bp):
AATACAATATATAAACA
Found at i:95017294 original size:22 final size:23
Alignment explanation
Indices: 95017244--95017297 Score: 67
Period size: 22 Copynumber: 2.4 Consensus size: 23
95017234 ATGGATTTTG
* *
95017244 ATTTTAATGAATTTAATAAATGA
1 ATTTTAATAAATTTAACAAATGA
*
95017267 A-GTTAATAAATTTAACAAAT-A
1 ATTTTAATAAATTTAACAAATGA
95017288 ATTTTAATAA
1 ATTTTAATAA
95017298 TTTTTTTCAT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
21 2 0.08
22 23 0.88
23 1 0.04
ACGTcount: A:0.52, C:0.02, G:0.06, T:0.41
Consensus pattern (23 bp):
ATTTTAATAAATTTAACAAATGA
Found at i:95021598 original size:39 final size:39
Alignment explanation
Indices: 95021539--95021617 Score: 124
Period size: 39 Copynumber: 2.0 Consensus size: 39
95021529 TCCGCAACGT
* *
95021539 ATGCCTCAATCATCTGTTGATAAACCAT-GAGGGTTTCGG
1 ATGCCTCAACCATCTATTGATAAACCATAG-GGGTTTCGG
95021578 ATGCCTCAACCATCTATTGATAAACCATAGGGGTTTCGG
1 ATGCCTCAACCATCTATTGATAAACCATAGGGGTTTCGG
95021617 A
1 A
95021618 CTTTCCGATA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
39 36 0.97
40 1 0.03
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (39 bp):
ATGCCTCAACCATCTATTGATAAACCATAGGGGTTTCGG
Found at i:95027311 original size:19 final size:20
Alignment explanation
Indices: 95027280--95027328 Score: 66
Period size: 19 Copynumber: 2.5 Consensus size: 20
95027270 TATCTTAACC
*
95027280 ATTAAATCTAAAAA-AAT-T
1 ATTAAAACTAAAAATAATAT
95027298 ATTACAAACTAAAAATAATAT
1 ATTA-AAACTAAAAATAATAT
95027319 ATTAAAACTA
1 ATTAAAACTA
95027329 TCTTAATCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
18 4 0.15
19 9 0.33
20 9 0.33
21 5 0.19
ACGTcount: A:0.61, C:0.08, G:0.00, T:0.31
Consensus pattern (20 bp):
ATTAAAACTAAAAATAATAT
Found at i:95030338 original size:19 final size:19
Alignment explanation
Indices: 95030311--95030357 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
95030301 GTTATTATTT
* *
95030311 TTTATTAAATAAAATAATC
1 TTTACTAAATAAAATAATA
* *
95030330 TTTACTAAATGAAATTATA
1 TTTACTAAATAAAATAATA
95030349 TTT-CTAAAT
1 TTTACTAAAT
95030358 TTAATTAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
18 6 0.25
19 18 0.75
ACGTcount: A:0.47, C:0.06, G:0.02, T:0.45
Consensus pattern (19 bp):
TTTACTAAATAAAATAATA
Found at i:95031621 original size:16 final size:15
Alignment explanation
Indices: 95031600--95031638 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
95031590 TCTAAATACA
95031600 AGTTATTCCAAACAAT
1 AGTTATTCCAAAC-AT
*
95031616 AGTTATTCTAAACAT
1 AGTTATTCCAAACAT
*
95031631 AGCTATTC
1 AGTTATTC
95031639 TTGAAATGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 9 0.43
16 12 0.57
ACGTcount: A:0.38, C:0.18, G:0.08, T:0.36
Consensus pattern (15 bp):
AGTTATTCCAAACAT
Found at i:95031792 original size:16 final size:16
Alignment explanation
Indices: 95031762--95031809 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
95031752 TTCTTAACAT
*
95031762 AACTATTCTCGAACAAA
1 AACTATTCT-AAACAAA
* *
95031779 AATTATTCTAAACAAC
1 AACTATTCTAAACAAA
95031795 AACTATTCTAAACAA
1 AACTATTCTAAACAA
95031810 GAGTTGTTTC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
16 19 0.70
17 8 0.30
ACGTcount: A:0.50, C:0.21, G:0.02, T:0.27
Consensus pattern (16 bp):
AACTATTCTAAACAAA
Found at i:95033813 original size:17 final size:17
Alignment explanation
Indices: 95033785--95033825 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
95033775 ATACAAAAGA
95033785 AAATGT-ATATATTCTT
1 AAATGTAATATATTCTT
95033801 AAATGTAATATATTCTT
1 AAATGTAATATATTCTT
95033818 AAATGTAA
1 AAATGTAA
95033826 AACAAACGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 6 0.25
17 18 0.75
ACGTcount: A:0.44, C:0.05, G:0.07, T:0.44
Consensus pattern (17 bp):
AAATGTAATATATTCTT
Found at i:95034470 original size:66 final size:66
Alignment explanation
Indices: 95034392--95034558 Score: 182
Period size: 66 Copynumber: 2.5 Consensus size: 66
95034382 GTGGCGTTTG
* * *
95034392 AGACCATAACAATCGACTTCTCTTTTGAGAATAACACGTATTTGAGAGT-AACAGAAA-TGGTGC
1 AGACCACAACAATCGACTTCTCTTTTGAGAATAACACGAATATGAGAGTGAA-A-AAAGTGGTG-
95034455 T-TA
63 TATA
* * **
95034458 AGACCACAACAATTGAATTCTCTTTTGAGAATAACTTGAATATGAGAGTGAAAAAAGTGGTGTAT
1 AGACCACAACAATCGACTTCTCTTTTGAGAATAACACGAATATGAGAGTGAAAAAAGTGGTGTAT
95034523 A
66 A
*
95034524 AGACCACAACAATCAACTT-TCCTCTTT-AGAATAAC
1 AGACCACAACAATCGACTTCT-CT-TTTGAGAATAAC
95034559 TTGTAAGAGA
Statistics
Matches: 86, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
65 5 0.06
66 76 0.88
67 5 0.06
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.28
Consensus pattern (66 bp):
AGACCACAACAATCGACTTCTCTTTTGAGAATAACACGAATATGAGAGTGAAAAAAGTGGTGTAT
A
Found at i:95036091 original size:24 final size:24
Alignment explanation
Indices: 95036064--95036112 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
95036054 CATTATAAGT
95036064 ATTCTCATCCCCATTCACAGGTTG
1 ATTCTCATCCCCATTCACAGGTTG
95036088 ATTCTCATCCCCATTCACAGGTTG
1 ATTCTCATCCCCATTCACAGGTTG
95036112 A
1 A
95036113 ATTTGTGGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.22, C:0.33, G:0.12, T:0.33
Consensus pattern (24 bp):
ATTCTCATCCCCATTCACAGGTTG
Found at i:95044910 original size:17 final size:18
Alignment explanation
Indices: 95044878--95044919 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
95044868 TCGTGTGGTT
*
95044878 CACCCGTGTGGGCCCACA
1 CACCCATGTGGGCCCACA
95044896 CACCCATGT-GGCCCACA
1 CACCCATGTGGGCCCACA
95044913 CGACCCA
1 C-ACCCA
95044920 CTTGCCTGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.21, C:0.48, G:0.21, T:0.10
Consensus pattern (18 bp):
CACCCATGTGGGCCCACA
Found at i:95047633 original size:28 final size:28
Alignment explanation
Indices: 95047593--95047646 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
95047583 TACTTAGACT
*
95047593 ATATTTAAATTCCATTATAAAACTAATC
1 ATATTTAAATTCCATCATAAAACTAATC
95047621 ATATTTAAATTCCATCATAAAACTAA
1 ATATTTAAATTCCATCATAAAACTAA
95047647 CCAAGAAGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.48, C:0.15, G:0.00, T:0.37
Consensus pattern (28 bp):
ATATTTAAATTCCATCATAAAACTAATC
Found at i:95049076 original size:31 final size:30
Alignment explanation
Indices: 95049038--95049101 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 30
95049028 CAACCAACAT
95049038 TTTGAGGCGTACTATTAGTTTGTCACACTC
1 TTTGAGGCGTACTATTAGTTTGTCACACTC
95049068 NTTTGAGGCGTACTATTAGTTTGTCACACTC
1 -TTTGAGGCGTACTATTAGTTTGTCACACTC
95049099 TTT
1 TTT
95049102 CTTTAATTGA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 3 0.09
31 30 0.91
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (30 bp):
TTTGAGGCGTACTATTAGTTTGTCACACTC
Found at i:95052001 original size:26 final size:24
Alignment explanation
Indices: 95051971--95052020 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
95051961 AAATAAAAAA
*
95051971 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
95051997 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
95052021 TAAAATAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:95052126 original size:15 final size:16
Alignment explanation
Indices: 95052096--95052128 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
95052086 AAATGGTTAT
95052096 ATTAAAAATTTAAAATA
1 ATTAAAAA-TTAAAATA
95052113 ATTAAAAA-TAAAATA
1 ATTAAAAATTAAAATA
95052128 A
1 A
95052129 AAAATATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
ATTAAAAATTAAAATA
Found at i:95061447 original size:18 final size:20
Alignment explanation
Indices: 95061421--95061457 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
95061411 CAAACACCCC
95061421 ATGTGC-TTTCT-TCTTTTT
1 ATGTGCTTTTCTCTCTTTTT
*
95061439 ATGTTCTTTTCTCTCTTTT
1 ATGTGCTTTTCTCTCTTTT
95061458 ATAACGTCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 5 0.31
19 5 0.31
20 6 0.38
ACGTcount: A:0.05, C:0.19, G:0.08, T:0.68
Consensus pattern (20 bp):
ATGTGCTTTTCTCTCTTTTT
Found at i:95062179 original size:23 final size:23
Alignment explanation
Indices: 95062132--95062180 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
95062122 ATTGCAATTT
**
95062132 AAAAATATAATTTAATTAGTCAA
1 AAAAATATAATTTAATTAGAAAA
*
95062155 AAAAATATAATTTAATTTGAAAA
1 AAAAATATAATTTAATTAGAAAA
95062178 AAA
1 AAA
95062181 GTTATTTTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (23 bp):
AAAAATATAATTTAATTAGAAAA
Found at i:95062238 original size:19 final size:19
Alignment explanation
Indices: 95062203--95062242 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
95062193 TTGAAATCGT
*
95062203 AATTTAAAATTATATTTTG
1 AATTTAAAAATATATTTTG
95062222 AATTTAAAAA-ATAATTTTG
1 AATTTAAAAATAT-ATTTTG
95062241 AA
1 AA
95062243 GCCTCAATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 2 0.11
19 17 0.89
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (19 bp):
AATTTAAAAATATATTTTG
Found at i:95062936 original size:25 final size:23
Alignment explanation
Indices: 95062883--95062936 Score: 54
Period size: 25 Copynumber: 2.2 Consensus size: 23
95062873 TAGGTTTTTT
*
95062883 ATTTTTGTAAAGATTAGGATTAT
1 ATTTTTGTAAAGATTAGGATTAG
* *
95062906 AGTTTTTTTAAAGACTTAGGGTTAGG
1 A-TTTTTGTAAAGA-TTAGGATTA-G
95062932 ATTTT
1 ATTTT
95062937 AAAGGTAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
23 1 0.04
24 11 0.44
25 12 0.48
26 1 0.04
ACGTcount: A:0.30, C:0.02, G:0.20, T:0.48
Consensus pattern (23 bp):
ATTTTTGTAAAGATTAGGATTAG
Found at i:95071879 original size:18 final size:18
Alignment explanation
Indices: 95071856--95071897 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
95071846 AAAACAAAAC
*
95071856 TTGAGAAAATTTAGAGAA
1 TTGAGAAAATTGAGAGAA
*
95071874 TTGAGAAAATTGAGAGAG
1 TTGAGAAAATTGAGAGAA
95071892 TTGAGA
1 TTGAGA
95071898 GTTTAGAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.45, C:0.00, G:0.29, T:0.26
Consensus pattern (18 bp):
TTGAGAAAATTGAGAGAA
Found at i:95071895 original size:9 final size:9
Alignment explanation
Indices: 95071856--95071917 Score: 54
Period size: 9 Copynumber: 6.9 Consensus size: 9
95071846 AAAACAAAAC
*
95071856 TTGAGAAAA
1 TTGAGAGAA
*
95071865 TTTAGAGAA
1 TTGAGAGAA
*
95071874 TTGAGAAAA
1 TTGAGAGAA
*
95071883 TTGAGAGAG
1 TTGAGAGAA
*
95071892 TTGAGAG-T
1 TTGAGAGAA
*
95071900 TTAGAAAGAA
1 TT-GAGAGAA
95071910 TTGAGAGA
1 TTGAGAGA
95071918 GTTGGATTTG
Statistics
Matches: 41, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
8 2 0.05
9 37 0.90
10 2 0.05
ACGTcount: A:0.45, C:0.00, G:0.29, T:0.26
Consensus pattern (9 bp):
TTGAGAGAA
Found at i:95071898 original size:27 final size:27
Alignment explanation
Indices: 95071869--95071929 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
95071859 AGAAAATTTA
*
95071869 GAGAATTGAG-AA-AATTGAGAGAGTT
1 GAGAGTTGAGAAAGAATTGAGAGAGTT
*
95071894 GAGAGTTTAGAAAGAATTGAGAGAGTT
1 GAGAGTTGAGAAAGAATTGAGAGAGTT
*
95071921 G-GATTTGAG
1 GAGAGTTGAG
95071930 TGAAAAGAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 8 0.27
26 8 0.27
27 14 0.47
ACGTcount: A:0.39, C:0.00, G:0.34, T:0.26
Consensus pattern (27 bp):
GAGAGTTGAGAAAGAATTGAGAGAGTT
Found at i:95075005 original size:9 final size:9
Alignment explanation
Indices: 95074991--95075021 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
95074981 GATTAAGTAA
95074991 AATTAAATT
1 AATTAAATT
95075000 AATTAAATT
1 AATTAAATT
95075009 AATTAAAATT
1 AATT-AAATT
95075019 AAT
1 AAT
95075022 ATGATATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 13 0.62
10 8 0.38
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (9 bp):
AATTAAATT
Found at i:95078264 original size:16 final size:16
Alignment explanation
Indices: 95078243--95078282 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
95078233 ACTATGGTAA
*
95078243 TAATTACATTATTTTG
1 TAATTACATTATCTTG
95078259 TAATTACATTATCTTG
1 TAATTACATTATCTTG
95078275 TAATTACA
1 TAATTACA
95078283 AAGAATTGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.35, C:0.10, G:0.05, T:0.50
Consensus pattern (16 bp):
TAATTACATTATCTTG
Found at i:95078646 original size:13 final size:13
Alignment explanation
Indices: 95078630--95078654 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
95078620 ATATTTTTTA
95078630 AATAAATTTTAAT
1 AATAAATTTTAAT
95078643 AATAAATTTTAA
1 AATAAATTTTAA
95078655 AGTTTTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
AATAAATTTTAAT
Found at i:95081890 original size:21 final size:22
Alignment explanation
Indices: 95081864--95081910 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
95081854 CTCTGCTCAA
*
95081864 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
95081885 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
95081907 ACTC
1 ACTC
95081911 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Done.