Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 309 of 313
Found at i:95085039 original size:46 final size:46
Alignment explanation
Indices: 95084938--95085025 Score: 131
Period size: 46 Copynumber: 1.9 Consensus size: 46
95084928 TGTAACCCGC
* * *
95084938 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCAT
* *
95084984 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTC
95085026 AACCATCCTA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCAT
Found at i:95086795 original size:20 final size:22
Alignment explanation
Indices: 95086772--95086829 Score: 66
Period size: 23 Copynumber: 2.7 Consensus size: 22
95086762 TTCCTCCTCC
95086772 TTTTCTTTTTCTTTT-T-TACT
1 TTTTCTTTTTCTTTTCTATACT
* *
95086792 TTTTCTTCTTCTTCTTCTATGCT
1 TTTTCTTTTTCTT-TTCTATACT
*
95086815 TCTTCTTTTTCTTTT
1 TTTTCTTTTTCTTTT
95086830 ATTCCCCAGC
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
20 12 0.39
21 2 0.06
22 3 0.10
23 14 0.45
ACGTcount: A:0.03, C:0.21, G:0.02, T:0.74
Consensus pattern (22 bp):
TTTTCTTTTTCTTTTCTATACT
Found at i:95091218 original size:21 final size:22
Alignment explanation
Indices: 95091192--95091245 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
95091182 CGACCTGTAG
*
95091192 CACGGGCGTGTCCC-AAGGTCA
1 CACGGGCGTGTCCCTAAGATCA
* *
95091213 CACGGGCATGTCCCTTAGATCA
1 CACGGGCGTGTCCCTAAGATCA
*
95091235 CAAGGGCGTGT
1 CACGGGCGTGT
95091246 GAGCTCTACA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 13 0.48
22 14 0.52
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (22 bp):
CACGGGCGTGTCCCTAAGATCA
Found at i:95099877 original size:21 final size:21
Alignment explanation
Indices: 95099853--95099904 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
95099843 AAATTTTTTT
**
95099853 ATTTATAATTTGATATAATAA
1 ATTTATAATGAGATATAATAA
* *
95099874 ATTTTTAAGGAGATATAATAA
1 ATTTATAATGAGATATAATAA
95099895 ATTTAATAAT
1 ATTT-ATAAT
95099905 ATATCGTTTA
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
21 21 0.88
22 3 0.12
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (21 bp):
ATTTATAATGAGATATAATAA
Found at i:95111224 original size:46 final size:46
Alignment explanation
Indices: 95111171--95111475 Score: 362
Period size: 46 Copynumber: 6.6 Consensus size: 46
95111161 TCTCTCTTAA
** * * *
95111171 ATGAAATGTGTAAAACCATGGTTGAAAGCTACCATGGCAACATGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * *
95111217 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
95111263 ATGAAATGAATAAGACCGTGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
95111309 ATGAAAAGAATAAGACCATGGTTGAAAGATACCATGACAACATAAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * * * *
95111355 GGGAAATGAACAAGACCATGGTTGAAAGATGCCATGGCAGCGTG-C
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
95111400 AATGAAATGAATAAGACCATGGTTGAAAGATACCATGACAATATGAC
1 -ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
95111447 A-GAAAATGAGTAAGACCATAGTTGAAAGA
1 ATG-AAATGAATAAGACCATGGTTGAAAGA
95111476 CACTATGACA
Statistics
Matches: 223, Mismatches: 33, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
45 2 0.01
46 220 0.99
47 1 0.00
ACGTcount: A:0.42, C:0.14, G:0.24, T:0.20
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:95111423 original size:138 final size:138
Alignment explanation
Indices: 95111185--95111485 Score: 408
Period size: 138 Copynumber: 2.2 Consensus size: 138
95111175 AATGTGTAAA
* * * * * ***
95111185 ACCATGGTTGAAAGCTACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACC
1 ACCATGGTTGAAAGATACCATGACAACATAACAGGAAATGAACAAGACCATGGTTGAAAGATACC
* * *
95111250 ATGGCAGCGTGACATGAAATGAATAAGACCGTGGTTGAAAGATACCATGGCAACGTGACATGAAA
66 ATGGCAGCGTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGACAACATGACA-GAAA
95111315 A-GAATAAG
130 ATGAATAAG
* *
95111323 ACCATGGTTGAAAGATACCATGACAACATAACGGGAAATGAACAAGACCATGGTTGAAAGATGCC
1 ACCATGGTTGAAAGATACCATGACAACATAACAGGAAATGAACAAGACCATGGTTGAAAGATACC
*
95111388 ATGGCAGCGTG-CAATGAAATGAATAAGACCATGGTTGAAAGATACCATGACAATATGACAGAAA
66 ATGGCAGCGTGAC-ATGAAATGAATAAGACCATGGTTGAAAGATACCATGACAACATGACAGAAA
*
95111452 ATGAGTAAG
130 ATGAATAAG
* * *
95111461 ACCATAGTTGAAAGACACTATGACA
1 ACCATGGTTGAAAGATACCATGACA
95111486 TCATGTCAAA
Statistics
Matches: 143, Mismatches: 18, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
137 6 0.04
138 137 0.96
ACGTcount: A:0.41, C:0.16, G:0.24, T:0.19
Consensus pattern (138 bp):
ACCATGGTTGAAAGATACCATGACAACATAACAGGAAATGAACAAGACCATGGTTGAAAGATACC
ATGGCAGCGTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGACAACATGACAGAAAA
TGAATAAG
Found at i:95114273 original size:50 final size:50
Alignment explanation
Indices: 95114217--95114325 Score: 182
Period size: 50 Copynumber: 2.2 Consensus size: 50
95114207 TATACTTTTA
* * *
95114217 ATGTTTGGTAATAGACCTATAATGAATGAATGGGATTGAAATTGTTATGT
1 ATGTTTGGAAATAGACCTATAATGAATGAATGGGATTGAAATGGTTATGC
95114267 ATGTTTGGAAATAGACCTATAATGAATGAATGGGATTGAAATGGTTATGC
1 ATGTTTGGAAATAGACCTATAATGAATGAATGGGATTGAAATGGTTATGC
*
95114317 ACGTTTGGA
1 ATGTTTGGA
95114326 TTGGTTTTGC
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 55 1.00
ACGTcount: A:0.34, C:0.06, G:0.26, T:0.35
Consensus pattern (50 bp):
ATGTTTGGAAATAGACCTATAATGAATGAATGGGATTGAAATGGTTATGC
Found at i:95118401 original size:14 final size:14
Alignment explanation
Indices: 95118374--95118427 Score: 54
Period size: 14 Copynumber: 3.6 Consensus size: 14
95118364 AATTTATTAT
* *
95118374 TTAATTAAAATTAAC
1 TTAATT-AACTTAAA
95118389 TTAATTAACTTAAA
1 TTAATTAACTTAAA
*
95118403 TTAACTAACTTTAATA
1 TTAATTAAC-TTAA-A
95118419 TTAATTAAC
1 TTAATTAAC
95118428 AAGGTTAGTT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
14 14 0.42
15 10 0.30
16 9 0.27
ACGTcount: A:0.48, C:0.09, G:0.00, T:0.43
Consensus pattern (14 bp):
TTAATTAACTTAAA
Found at i:95123907 original size:12 final size:13
Alignment explanation
Indices: 95123890--95123919 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
95123880 TAGCCCAAAT
95123890 AATTT-GTACCTC
1 AATTTGGTACCTC
95123902 AATTTGGTACCTC
1 AATTTGGTACCTC
95123915 AATTT
1 AATTT
95123920 TTTTTACAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.27, C:0.20, G:0.10, T:0.43
Consensus pattern (13 bp):
AATTTGGTACCTC
Found at i:95125281 original size:12 final size:12
Alignment explanation
Indices: 95125264--95125289 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
95125254 TGTTTCTCGA
95125264 ATTAGATAATTG
1 ATTAGATAATTG
95125276 ATTAGATAATTG
1 ATTAGATAATTG
95125288 AT
1 AT
95125290 CAAACAGATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.15, T:0.42
Consensus pattern (12 bp):
ATTAGATAATTG
Found at i:95125842 original size:16 final size:17
Alignment explanation
Indices: 95125816--95125848 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
95125806 ATGATCTAAA
95125816 GGCAGTTTTAACCAGTT
1 GGCAGTTTTAACCAGTT
*
95125833 GGCA-TTTTAATCAGTT
1 GGCAGTTTTAACCAGTT
95125849 TTTTTAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.24, C:0.15, G:0.21, T:0.39
Consensus pattern (17 bp):
GGCAGTTTTAACCAGTT
Found at i:95127461 original size:13 final size:13
Alignment explanation
Indices: 95127443--95127470 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
95127433 CACCTACAAC
95127443 AACAATAACCATA
1 AACAATAACCATA
95127456 AACAATAACCATA
1 AACAATAACCATA
95127469 AA
1 AA
95127471 GTAAGAAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.64, C:0.21, G:0.00, T:0.14
Consensus pattern (13 bp):
AACAATAACCATA
Found at i:95128116 original size:19 final size:19
Alignment explanation
Indices: 95128092--95128188 Score: 137
Period size: 19 Copynumber: 5.2 Consensus size: 19
95128082 AATCTTTAAG
95128092 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
95128111 GATATGCAATCTTAGACAT
1 GATATGCAATCTTAGATAT
*
95128130 GATA--CAAGCTTAGATAT
1 GATATGCAATCTTAGATAT
95128147 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
95128166 GATATGC-ATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
95128186 GAT
1 GAT
95128189 CTTATAATCT
Statistics
Matches: 70, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
17 15 0.21
18 5 0.07
19 41 0.59
20 9 0.13
ACGTcount: A:0.37, C:0.11, G:0.18, T:0.34
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:95133368 original size:1 final size:1
Alignment explanation
Indices: 95133362--95133448 Score: 57
Period size: 1 Copynumber: 87.0 Consensus size: 1
95133352 CTTTTATTTC
* * * * * * * * * *
95133362 AAAAAAAAGAAAAAATAAAAAAATAAAAGAAAAAGAGAAAAAAAGAAAAAGAAAAAAGAGAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * *
95133427 AGAAAAAAGAAAAAAGAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAA
95133449 TGGAGAGGCC
Statistics
Matches: 60, Mismatches: 26, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
1 60 1.00
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.02
Consensus pattern (1 bp):
A
Found at i:95133376 original size:7 final size:7
Alignment explanation
Indices: 95133364--95133448 Score: 102
Period size: 7 Copynumber: 11.9 Consensus size: 7
95133354 TTTATTTCAA
95133364 AAAAAAG
1 AAAAAAG
*
95133371 AAAAAAT
1 AAAAAAG
95133378 AAAAAA-
1 AAAAAAG
*
95133384 ATAAAAG
1 AAAAAAG
95133391 AAAAAGAG
1 AAAAA-AG
95133399 AAAAAA-
1 AAAAAAG
95133405 AGAAAAAG
1 A-AAAAAG
95133413 AAAAAAGAG
1 -AAAAA-AG
95133422 AAAAAAG
1 AAAAAAG
95133429 AAAAAAG
1 AAAAAAG
95133436 AAAAAAG
1 AAAAAAG
95133443 AAAAAA
1 AAAAAA
95133449 TGGAGAGGCC
Statistics
Matches: 69, Mismatches: 3, Indels: 12
0.82 0.04 0.14
Matches are distributed among these distances:
6 6 0.09
7 44 0.64
8 16 0.23
9 3 0.04
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.02
Consensus pattern (7 bp):
AAAAAAG
Found at i:95133383 original size:16 final size:16
Alignment explanation
Indices: 95133362--95133448 Score: 90
Period size: 16 Copynumber: 5.4 Consensus size: 16
95133352 CTTTTATTTC
*
95133362 AAAAAAAAGAAAAAATA
1 AAAAAAAAGAAAAAA-G
*
95133379 AAAAAATAAAAGAAAAAG
1 AAAAAA-AAGA-AAAAAG
95133397 AGAAAAAAAG-AAAAAG
1 A-AAAAAAAGAAAAAAG
*
95133413 AAAAAAGAGAAAAAAG
1 AAAAAAAAGAAAAAAG
95133429 --AAAAAAGAAAAAAG
1 AAAAAAAAGAAAAAAG
95133443 AAAAAA
1 AAAAAA
95133449 TGGAGAGGCC
Statistics
Matches: 59, Mismatches: 5, Indels: 13
0.77 0.06 0.17
Matches are distributed among these distances:
14 13 0.22
15 7 0.12
16 17 0.29
17 6 0.10
18 6 0.10
19 10 0.17
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.02
Consensus pattern (16 bp):
AAAAAAAAGAAAAAAG
Found at i:95133389 original size:23 final size:21
Alignment explanation
Indices: 95133362--95133448 Score: 86
Period size: 23 Copynumber: 4.0 Consensus size: 21
95133352 CTTTTATTTC
*
95133362 AAAAAAAAG-AAAAAATAAAA
1 AAAAAAAAGAAAAAAAAAAAA
* *
95133382 AAATAAAAGAAAAAGAGAAAAA
1 AAAAAAAAGAAAAA-AAAAAAA
*
95133404 AAGAAAAAGAAAAAAGAGAAAAA
1 AAAAAAAAGAAAAAA-A-AAAAA
* *
95133427 AGAAAAAAGAAAAAAGAAAAA
1 AAAAAAAAGAAAAAAAAAAAA
95133448 A
1 A
95133449 TGGAGAGGCC
Statistics
Matches: 54, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
20 8 0.15
21 11 0.20
22 17 0.31
23 18 0.33
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.02
Consensus pattern (21 bp):
AAAAAAAAGAAAAAAAAAAAA
Found at i:95134511 original size:44 final size:44
Alignment explanation
Indices: 95134457--95134972 Score: 405
Period size: 44 Copynumber: 11.7 Consensus size: 44
95134447 GATGATTTAA
* * *
95134457 CATCTTTGTATTGGCAAAGAGCAGATCGAAGACAACAGATTTGG
1 CATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGG
* * *
95134501 CGTCTCTGTATTGGTAGAGAGCAGATCGAAGATGACAGATTTGG
1 CATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGG
* * * *
95134545 CATCTCTGTATTTGGCGGAGAGCAGATCGAAGACATAGCTGATTTGC
1 CATCTCTGTA-TTGGCAGAGAGCAGATCGAAG--ATAACAGATTTGG
* * * ** *
95134592 CTTTCACGTGT-TTACGTTGA-AGCA-AGTCTAAGAT----GATTTGG
1 C-ATCTC-TGTATT-GGCAGAGAGCAGA-TCGAAGATAACAGATTTGG
* **
95134633 CATCTCTGTATTGGCAGAGAGCAAATCGAAGATAGTAGATTTGG
1 CATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGG
* *
95134677 CATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACAGATTTGG
1 CATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGG
* * * * * *
95134721 CATATCTATATTCGGCGGAGAGTAGATCGAAGACATAGCTGATTTGG
1 CATCTCTGTATT-GGCAGAGAGCAGATCGAAG--ATAACAGATTTGG
* * ** *
95134768 CTTCCACGTGT-TTGCGTTGA-AGCA-AGTCTAAGAT----GATTTGG
1 CAT-CTC-TGTATTG-GCAGAGAGCAGA-TCGAAGATAACAGATTTGG
* * *
95134809 CATCTCTGTATTGGTAGAGAGCAAATCGAAGATAACAGATTTGA
1 CATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGG
* *
95134853 CATCTCTGTATTGACAGAGAGCAGATCGAAGATAATAGATTTGG
1 CATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGG
*
95134897 CGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGA-AGATTTGG
1 CATCTCTGTATTGGCAGAGAGCAGATCGAAGATA-ACAGATTTGG
* * * * *
95134941 CGTTTCTGTTTTGTCAGAGAGCATATCGAAGA
1 CATCTCTGTATTGGCAGAGAGCAGATCGAAGA
95134973 GAAGAACAAC
Statistics
Matches: 380, Mismatches: 63, Indels: 58
0.76 0.13 0.12
Matches are distributed among these distances:
39 13 0.03
40 32 0.08
41 18 0.05
44 216 0.57
45 40 0.11
46 2 0.01
47 42 0.11
48 12 0.03
49 5 0.01
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.28
Consensus pattern (44 bp):
CATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGG
Found at i:95134740 original size:176 final size:175
Alignment explanation
Indices: 95134445--95134928 Score: 734
Period size: 176 Copynumber: 2.8 Consensus size: 175
95134435 AAGCAGATCC
** * * * * *
95134445 AAGATGATTTAACATCTTTGTATTGGCAAAGAGCAGATCGAAGACAACAGATTTGGCGTCTCTGT
1 AAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAAATCGAAGATAACAGATTTGGCATCTCTGT
*
95134510 ATTGGTAGAGAGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTTGGCGGAGAGCAGATCGA
66 ATTGGCAGAGAGCAGATCGAAGATGACAGATTTGGCATCTCTGTA-TTGGCGGAGAGCAGATCGA
*
95134575 AGACATAGCTGATTTGCCTTTCACGTGTTTACGTTGAAGCAAGTCT
130 AGACATAGCTGATTTGCCTTCCACGTGTTTACGTTGAAGCAAGTCT
**
95134621 AAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAAATCGAAGATAGTAGATTTGGCATCTCTGT
1 AAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAAATCGAAGATAACAGATTTGGCATCTCTGT
* * * *
95134686 ATTGGCAGAGAGCAGATCAAAGATGACAGATTTGGCATATCTATATTCGGCGGAGAGTAGATCGA
66 ATTGGCAGAGAGCAGATCGAAGATGACAGATTTGGCATCTCTGTATT-GGCGGAGAGCAGATCGA
* *
95134751 AGACATAGCTGATTTGGCTTCCACGTGTTTGCGTTGAAGCAAGTCT
130 AGACATAGCTGATTTGCCTTCCACGTGTTTACGTTGAAGCAAGTCT
* *
95134797 AAGATGATTTGGCATCTCTGTATTGGTAGAGAGCAAATCGAAGATAACAGATTTGACATCTCTGT
1 AAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAAATCGAAGATAACAGATTTGGCATCTCTGT
* * * * *
95134862 ATTGACAGAGAGCAGATCGAAGATAATAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAA
66 ATTGGCAGAGAGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAA
95134927 GA
131 GA
95134929 TAGAAGATTT
Statistics
Matches: 277, Mismatches: 30, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
175 20 0.07
176 257 0.93
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (175 bp):
AAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAAATCGAAGATAACAGATTTGGCATCTCTGT
ATTGGCAGAGAGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAA
GACATAGCTGATTTGCCTTCCACGTGTTTACGTTGAAGCAAGTCT
Found at i:95135280 original size:134 final size:134
Alignment explanation
Indices: 95135031--95136050 Score: 1772
Period size: 134 Copynumber: 7.6 Consensus size: 134
95135021 AGATGATATA
* * *
95135031 GCATTCCTGTGTTTACAGGGAACAGATCGAAGACACAGCAGATCTGACATTCCTGTGCTTACAGC
1 GCATCCCTATGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTGTGCTTACAGC
95135096 GAAGCAGATCAAAGATTTTAACATGACATCCCTGAATTTTTAGGGAACAAGTTGAAGATAGCAGA
66 GAAGCAGATCAAAGATTTTAACATGACATCCCTGAATTTTTAGGGAACAAGTTGAAGATAGCAGA
95135161 TTTG
131 TTTG
95135165 GCATCCCTATGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTGTGCTTACAGC
1 GCATCCCTATGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTGTGCTTACAGC
95135230 GAAGCAGATCAAAGATTTTAACATGACATCCCTGAATTTTTAGGGAACAAGTTGAAGATAGCAGA
66 GAAGCAGATCAAAGATTTTAACATGACATCCCTGAATTTTTAGGGAACAAGTTGAAGATAGCAGA
95135295 TTTG
131 TTTG
95135299 GCATCCCTATGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTGTGCTTACAGC
1 GCATCCCTATGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTGTGCTTACAGC
95135364 GAAGCAGATCAAAGATTTTAACATGACATCCCTGAATTTTTAGGGAACAAGTTGAAGATAGCAGA
66 GAAGCAGATCAAAGATTTTAACATGACATCCCTGAATTTTTAGGGAACAAGTTGAAGATAGCAGA
95135429 TTTG
131 TTTG
95135433 GCATCCCTATGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTGTGCTTACAGC
1 GCATCCCTATGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTGTGCTTACAGC
95135498 GAAGCAGATCAAAGATTTTAACATGACATCCCTGAATTTTTAGGGAACAAGTTGAAGATAGCAGA
66 GAAGCAGATCAAAGATTTTAACATGACATCCCTGAATTTTTAGGGAACAAGTTGAAGATAGCAGA
95135563 TTTG
131 TTTG
95135567 GCATCCCTATGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTGTGCTTACAGC
1 GCATCCCTATGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTGTGCTTACAGC
95135632 GAAGCAGATCAAAGATTTTAACATGACATCCCTGAATTTTTAGGGAACAAGTTGAAGATAGCAGA
66 GAAGCAGATCAAAGATTTTAACATGACATCCCTGAATTTTTAGGGAACAAGTTGAAGATAGCAGA
95135697 TTTG
131 TTTG
* * *
95135701 GCATTCCTGTGTTTACAGGGAACAGATCGAAGACACAGCAGATCTGACATTCCTGTGCTTACAGC
1 GCATCCCTATGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTGTGCTTACAGC
95135766 GAAGCAGATCAAAGATTTTAACATGACATCCCTGAATTTTTAGGGAACAAGTTGAAGATAGCAGA
66 GAAGCAGATCAAAGATTTTAACATGACATCCCTGAATTTTTAGGGAACAAGTTGAAGATAGCAGA
95135831 TTTG
131 TTTG
*
95135835 GCATCCCTATGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTGTGCTTACAAC
1 GCATCCCTATGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTGTGCTTACAGC
* * * * * ** * *
95135900 GAAGCAGATTAAAGATTTCAGCATGGCATCGCTGTGTTTATAGGGAACAAGTTGAAGATAGTAGA
66 GAAGCAGATCAAAGATTTTAACATGACATCCCTGAATTTTTAGGGAACAAGTTGAAGATAGCAGA
95135965 TTTG
131 TTTG
** * ** * * * *
95135969 GCATCTCCATAT-TCGACAGGGAGCAGATTAAAGACATAGTAGATCTGACCTTCATGTGTTTACA
1 GCATC-CC-TATGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTGTGCTTACA
* *
95136033 TCGAAGCAGATCCAAGAT
64 GCGAAGCAGATCAAAGAT
95136051 GATAGATTTT
Statistics
Matches: 853, Mismatches: 31, Indels: 3
0.96 0.03 0.00
Matches are distributed among these distances:
134 790 0.93
135 60 0.07
136 3 0.00
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (134 bp):
GCATCCCTATGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTGTGCTTACAGC
GAAGCAGATCAAAGATTTTAACATGACATCCCTGAATTTTTAGGGAACAAGTTGAAGATAGCAGA
TTTG
Found at i:95136117 original size:45 final size:45
Alignment explanation
Indices: 95136037--95136185 Score: 156
Period size: 45 Copynumber: 3.3 Consensus size: 45
95136027 TTTACATCGA
* * * * *
95136037 AGCAGATCCAAGATGATAGATTTTGCATCTTTGTATTAGACGGGG
1 AGCAAATCGAAGATAATAGATTTGGCATCTCTGTATTAGACGGGG
*
95136082 AGCAAATCGGAGATAATAGATTTGGCATCTCTGTATTAGACGGGG
1 AGCAAATCGAAGATAATAGATTTGGCATCTCTGTATTAGACGGGG
** * ** * *
95136127 AGCAGTTTGAAGA-AGCAAATTTGGCGTCTCTGTATTAGACGGGG
1 AGCAAATCGAAGATAATAGATTTGGCATCTCTGTATTAGACGGGG
* *
95136171 AGCAGATCAAAGATA
1 AGCAAATCGAAGATA
95136186 GCAGATATCG
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
44 37 0.43
45 49 0.57
ACGTcount: A:0.32, C:0.13, G:0.28, T:0.27
Consensus pattern (45 bp):
AGCAAATCGAAGATAATAGATTTGGCATCTCTGTATTAGACGGGG
Found at i:95136574 original size:19 final size:19
Alignment explanation
Indices: 95136546--95136643 Score: 137
Period size: 19 Copynumber: 5.2 Consensus size: 19
95136536 AATCTTTAAG
*
95136546 GATATGCAATCTTAGATAT
1 GATATACAATCTTAGATAT
95136565 GATATACAATCTTAGATAT
1 GATATACAATCTTAGATAT
*
95136584 G--ATACAACCTTAGATAT
1 GATATACAATCTTAGATAT
95136601 GATATACAATCTTAGATAT
1 GATATACAATCTTAGATAT
*
95136620 GATATGCAATCTTGAAGATAT
1 GATATACAATCTT--AGATAT
95136641 GAT
1 GAT
95136644 CTTGTAATCT
Statistics
Matches: 71, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
17 16 0.23
19 46 0.65
21 9 0.13
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.35
Consensus pattern (19 bp):
GATATACAATCTTAGATAT
Found at i:95136576 original size:36 final size:35
Alignment explanation
Indices: 95136536--95136643 Score: 103
Period size: 36 Copynumber: 2.9 Consensus size: 35
95136526 ATGGAAATAT
95136536 AATCTTTAAGGATATGCAATCTTAGATATGATATAC
1 AATCTTTAA-GATATGCAATCTTAGATATGATATAC
*
95136572 AATC-TT-AGATATGATACAACCTTAGATATGATATAC
1 AATCTTTAAGATATG---CAATCTTAGATATGATATAC
*
95136608 AATCTTAGATATGATATGCAATCTTGAAGATATGAT
1 AATCTT---TAAGATATGCAATCTT--AGATATGAT
95136644 CTTGTAATCT
Statistics
Matches: 59, Mismatches: 3, Indels: 16
0.76 0.04 0.21
Matches are distributed among these distances:
33 6 0.10
34 1 0.02
35 2 0.03
36 27 0.46
37 1 0.02
38 6 0.10
40 10 0.17
41 6 0.10
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.35
Consensus pattern (35 bp):
AATCTTTAAGATATGCAATCTTAGATATGATATAC
Found at i:95140294 original size:32 final size:32
Alignment explanation
Indices: 95140234--95140294 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
95140224 ACATTATTAT
*
95140234 CTTTTAATATATATATGTATCGTATATACATC
1 CTTTTAATATATATATGTATCATATATACATC
*
95140266 CTTTTAATATATATATTTAT-ATATTATAC
1 CTTTTAATATATATATGTATCATA-TATAC
95140295 TTCATATTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 2 0.08
32 24 0.92
ACGTcount: A:0.36, C:0.10, G:0.03, T:0.51
Consensus pattern (32 bp):
CTTTTAATATATATATGTATCATATATACATC
Found at i:95145109 original size:3 final size:3
Alignment explanation
Indices: 95145103--95145151 Score: 89
Period size: 3 Copynumber: 16.3 Consensus size: 3
95145093 AAATCCAAAA
*
95145103 AAG AAG AAG AAG GAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
95145151 A
1 A
95145152 TCATGGAAAG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:95146953 original size:66 final size:66
Alignment explanation
Indices: 95146847--95146978 Score: 228
Period size: 66 Copynumber: 2.0 Consensus size: 66
95146837 ATTCATATAT
* *
95146847 CATTCATAACACATTTAATTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGAC
1 CATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGAC
95146912 A
66 A
* *
95146913 CATTCATAACACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCGTAATCATTTGAC
1 CATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGAC
95146978 A
66 A
95146979 TAAGCATAAA
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 62 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (66 bp):
CATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGAC
A
Found at i:95147142 original size:43 final size:44
Alignment explanation
Indices: 95147086--95147193 Score: 139
Period size: 43 Copynumber: 2.4 Consensus size: 44
95147076 GTGATGAGCT
95147086 TTAACCTCCTAAGCAGTAGGGTAACAAGCCG-A-ATTTACAGACC
1 TTAACC-CCTAAGCAGTAGGGTAACAAGCCGAAGATTTACAGACC
* * * *
95147129 TTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTTCAGATC
1 TT-AACCCCTAAGCAGTAGGGTAACAAGCCGAAGATTTACAGACC
95147174 TTAACCCCTTAAGCAGTAGG
1 TTAACCCC-TAAGCAGTAGG
95147194 AAAACAGATC
Statistics
Matches: 57, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
43 24 0.42
44 11 0.19
45 22 0.39
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.23
Consensus pattern (44 bp):
TTAACCCCTAAGCAGTAGGGTAACAAGCCGAAGATTTACAGACC
Found at i:95147273 original size:132 final size:131
Alignment explanation
Indices: 95147031--95147286 Score: 329
Period size: 132 Copynumber: 1.9 Consensus size: 131
95147021 AGATCGGTGA
* *
95147031 ATTTACAGATCTTAACCCCCTAAACAGTAGGAAAACAGATCGAAGGTGATGAGCTTTAACCTCCT
1 ATTTACAGATCTTAACCCCCTAAACAGTAGGAAAACAGATCGAAGGCGAAGAGCTTTAACCTCCT
* *
95147096 AAGCAGTAGGGTAACAAGCCGAATTTACAGACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGA
66 AAGCAGTAGGGGAACAAGCCGAACTTACAGACCTTAAACCCCTAAGCAGTAGGG-AACAGGCTGA
95147161 AG
130 AG
* * * *
95147163 ATTTTCAGATCTTAACCCCTTAAGCAGTAGGAAAACAGATCG-AGGACGAAGGGCTTTAAACC-C
1 ATTTACAGATCTTAACCCCCTAAACAGTAGGAAAACAGATCGAAGG-CGAAGAGCTTT-AACCTC
* * ** * *
95147226 CTAAGCAGTAGGGGAATAGGTTGAACTTACAGATCTT-AACACCCTAAGTAGTAGGGAACAG
64 CTAAGCAGTAGGGGAACAAGCCGAACTTACAGACCTTAAAC-CCCTAAGCAGTAGGGAACAG
95147287 ATCGAAGATG
Statistics
Matches: 107, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
131 11 0.10
132 92 0.86
133 4 0.04
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (131 bp):
ATTTACAGATCTTAACCCCCTAAACAGTAGGAAAACAGATCGAAGGCGAAGAGCTTTAACCTCCT
AAGCAGTAGGGGAACAAGCCGAACTTACAGACCTTAAACCCCTAAGCAGTAGGGAACAGGCTGAA
G
Found at i:95147319 original size:86 final size:89
Alignment explanation
Indices: 95147127--95147333 Score: 251
Period size: 86 Copynumber: 2.4 Consensus size: 89
95147117 AATTTACAGA
* * *
95147127 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTTCAGATCTTAACCCCTTAAGCAGTA
1 CCTTAAACCCCTAAGCAGTAGGGGAACAGGCTGAAGACTTACAGATCTTAACCCCTTAAGCAGTA
*
95147192 GGAAAACAGATCGAGGACGAAGGG
66 GGAAAACAGATCGAAGACGAAGGG
* * * *
95147216 CTTTAAACCCCTAAGCAGTAGGGGAATAGGTTG-A-ACTTACAGATCTTAACACCC-TAAGTAGT
1 CCTTAAACCCCTAAGCAGTAGGGGAACAGGCTGAAGACTTACAGATCTTAAC-CCCTTAAGCAGT
* * * *
95147278 AGG-GAACAGATCGAAGATGATGGT
65 AGGAAAACAGATCGAAGACGAAGGG
* *
95147302 CCTTAACCCCCTAAGCAGTAGGGTAACAGGCT
1 CCTTAAACCCCTAAGCAGTAGGGGAACAGGCT
95147334 AGAAATTACA
Statistics
Matches: 100, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
86 43 0.43
87 24 0.24
88 4 0.04
89 29 0.29
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (89 bp):
CCTTAAACCCCTAAGCAGTAGGGGAACAGGCTGAAGACTTACAGATCTTAACCCCTTAAGCAGTA
GGAAAACAGATCGAAGACGAAGGG
Found at i:95152063 original size:43 final size:44
Alignment explanation
Indices: 95151992--95152126 Score: 184
Period size: 43 Copynumber: 3.1 Consensus size: 44
95151982 TATCGAAATG
* *
95151992 TGATATTCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
1 TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
* * *
95152036 TGATA-TCGGGCTTTGAGCTTAGTAGGCTATGATGCCGGTGAAA
1 TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
*
95152079 T-ATTATTCGAGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
1 TGA-TATTCG-GGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
95152124 TGA
1 TGA
95152127 AATGTTATGT
Statistics
Matches: 78, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
42 1 0.01
43 36 0.46
44 8 0.10
45 32 0.41
46 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (44 bp):
TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:95152108 original size:45 final size:43
Alignment explanation
Indices: 95152009--95152126 Score: 166
Period size: 45 Copynumber: 2.7 Consensus size: 43
95151999 CGGGCTTCGG
*
95152009 GCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCTTTGA
1 GCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGCCTTTGA
* * *
95152052 GCTTAGTAGGCTATGATGCCGGTGAAAT-ATTATTCGAGCCTTTGA
1 GCCTAGCAGGCTATAATGCCGGTGAAATGA-TA-TCG-GCCTTTGA
95152097 GCCTAGCAGGCTATAATGCCGGTGAAATGA
1 GCCTAGCAGGCTATAATGCCGGTGAAATGA
95152127 AATGTTATGT
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
42 1 0.02
43 27 0.42
44 3 0.05
45 32 0.50
46 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (43 bp):
GCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGCCTTTGA
Found at i:95152439 original size:38 final size:38
Alignment explanation
Indices: 95152396--95152593 Score: 249
Period size: 38 Copynumber: 5.2 Consensus size: 38
95152386 ATGATATTTG
* ** *
95152396 TATCCGGCTTAAAGACCGCAGGCTAT-ATGCTGGAATTA
1 TATCCGGGTTAAATCCCGCAGGCT-TCGTGCTGGAATTA
95152434 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA-TA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG-AATTA
95152472 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA-TA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG-AATTA
* * *
95152510 TATCCGGGTTAATTCTCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
* * *
95152548 TATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
*
95152586 TATTCGGG
1 TATCCGGG
95152594 CCTTTGAGCC
Statistics
Matches: 145, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
37 2 0.01
38 141 0.97
39 2 0.01
ACGTcount: A:0.21, C:0.22, G:0.26, T:0.30
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
Found at i:95152636 original size:45 final size:45
Alignment explanation
Indices: 95152586--95152758 Score: 210
Period size: 45 Copynumber: 3.9 Consensus size: 45
95152576 GCTGGTATTA
*
95152586 TATTCGGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
* *
95152631 TATTCGGGCCTTTGGGCCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
* * *
95152676 TATTCGGG-CTTTCGAGCCTAGCAGGCTATAATGCCGATGAAATGA-
1 TATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGAGA-CAC
* * * *
95152721 TAATCGGGCC-TCGATCCTAGCAGGCGA-AATGCCGGTGA
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
95152759 TTTGAGAAAA
Statistics
Matches: 113, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
43 10 0.09
44 17 0.15
45 84 0.74
46 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
Found at i:95153007 original size:33 final size:33
Alignment explanation
Indices: 95152962--95153028 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
95152952 GTGTGAAAGT
*
95152962 ATGTGAACGTATTTGAGTTAATTATGTTATATG
1 ATGTGAAAGTATTTGAGTTAATTATGTTATATG
95152995 ATGTGAAAGTATTTGAGTTAATTATGTTATATG
1 ATGTGAAAGTATTTGAGTTAATTATGTTATATG
95153028 A
1 A
95153029 ATTTAGATTA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.33, C:0.01, G:0.21, T:0.45
Consensus pattern (33 bp):
ATGTGAAAGTATTTGAGTTAATTATGTTATATG
Found at i:95154335 original size:21 final size:21
Alignment explanation
Indices: 95154280--95154335 Score: 51
Period size: 21 Copynumber: 2.6 Consensus size: 21
95154270 CATATATATA
*
95154280 TATATATCATGTATATACATTT
1 TATATAT-ATATATATACATTT
* **
95154302 TA-ATATCTCATATATATTTTT
1 TATATATAT-ATATATACATTT
95154323 TATATATATATAT
1 TATATATATATAT
95154336 GTATATTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 5
0.73 0.14 0.14
Matches are distributed among these distances:
20 1 0.04
21 19 0.70
22 7 0.26
ACGTcount: A:0.38, C:0.07, G:0.02, T:0.54
Consensus pattern (21 bp):
TATATATATATATATACATTT
Found at i:95154344 original size:19 final size:18
Alignment explanation
Indices: 95154271--95154350 Score: 56
Period size: 19 Copynumber: 4.4 Consensus size: 18
95154261 TATATATTTC
*
95154271 ATATATATATA-TATATC
1 ATATATATATATTATATT
* * * *
95154288 ATGTATATACATTTTAAT
1 ATATATATATATTATATT
* *
95154306 ATCTCATATATATT-TTTT
1 ATAT-ATATATATTATATT
95154324 ATATATATATATGTATATT
1 ATATATATATAT-TATATT
*
95154343 ATGTATAT
1 ATATATAT
95154351 TTTCTTTTTT
Statistics
Matches: 47, Mismatches: 12, Indels: 6
0.72 0.18 0.09
Matches are distributed among these distances:
17 17 0.36
18 12 0.26
19 18 0.38
ACGTcount: A:0.39, C:0.05, G:0.04, T:0.53
Consensus pattern (18 bp):
ATATATATATATTATATT
Found at i:95157517 original size:39 final size:39
Alignment explanation
Indices: 95157473--95157549 Score: 136
Period size: 39 Copynumber: 2.0 Consensus size: 39
95157463 CAATTTAGGG
95157473 TAAGGATTTCTTTACAATGGGAGGCAACATAATGTCACT
1 TAAGGATTTCTTTACAATGGGAGGCAACATAATGTCACT
* *
95157512 TAAGGATTTCTTTACAATGGGAGGTAATATAATGTCAC
1 TAAGGATTTCTTTACAATGGGAGGCAACATAATGTCAC
95157550 CATCACTTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.32
Consensus pattern (39 bp):
TAAGGATTTCTTTACAATGGGAGGCAACATAATGTCACT
Found at i:95175754 original size:25 final size:26
Alignment explanation
Indices: 95175713--95175774 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 26
95175703 AGTGATAAAT
*
95175713 GGTAAGCTCCT-TCGAGCTGAATAAC
1 GGTAAGCTCATATCGAGCTGAATAAC
* *
95175738 GGTAAGCTCATAT-GAGCTGAGTATC
1 GGTAAGCTCATATCGAGCTGAATAAC
*
95175763 GATAAGCTCATA
1 GGTAAGCTCATA
95175775 AGAGGTGGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
25 31 0.97
26 1 0.03
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (26 bp):
GGTAAGCTCATATCGAGCTGAATAAC
Found at i:95182906 original size:21 final size:21
Alignment explanation
Indices: 95182880--95183025 Score: 193
Period size: 21 Copynumber: 6.7 Consensus size: 21
95182870 CGGAGGTAAA
*
95182880 GGAGGGTATGGAGGTGGGCAC
1 GGAGGGTATGGTGGTGGGCAC
*
95182901 GGAGGGTATGGAGGTGGGCAC
1 GGAGGGTATGGTGGTGGGCAC
*
95182922 GGAGGGTATGGTGGTGGACAC
1 GGAGGGTATGGTGGTGGGCAC
*
95182943 GGAGGGTATGGTGGTGGACAC
1 GGAGGGTATGGTGGTGGGCAC
95182964 GGAGGGTATGGTGGTGGTGGCCAC
1 GGAGGGTATGGTGGT-G-GG-CAC
95182988 GGAGGGTATGGTGGTGGTGGCCAC
1 GGAGGGTATGGTGGT-G-GG-CAC
*
95183012 GGAGGATATGGTGG
1 GGAGGGTATGGTGG
95183026 CGGTGGACAT
Statistics
Matches: 118, Mismatches: 4, Indels: 3
0.94 0.03 0.02
Matches are distributed among these distances:
21 76 0.64
22 1 0.01
23 1 0.01
24 40 0.34
ACGTcount: A:0.17, C:0.10, G:0.55, T:0.18
Consensus pattern (21 bp):
GGAGGGTATGGTGGTGGGCAC
Found at i:95189924 original size:16 final size:17
Alignment explanation
Indices: 95189871--95189948 Score: 67
Period size: 16 Copynumber: 4.8 Consensus size: 17
95189861 GATTGATTTA
* *
95189871 TATTTT-ATATATAAAT
1 TATTTTAATATTTAATT
*
95189887 TATTTAAATA-TT-ATT
1 TATTTTAATATTTAATT
*
95189902 TAATTTAATATTTAATT
1 TATTTTAATATTTAATT
*
95189919 T-TTTTAATATTTTATT
1 TATTTTAATATTTAATT
95189935 TATTATTAAT-TTTA
1 TATT-TTAATATTTA
95189949 CAAAAAATTA
Statistics
Matches: 49, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
15 10 0.20
16 22 0.45
17 12 0.24
18 5 0.10
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (17 bp):
TATTTTAATATTTAATT
Found at i:95193752 original size:20 final size:20
Alignment explanation
Indices: 95193727--95193772 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
95193717 ATACGCGGCA
95193727 CATTTATGCTAGCCCGAATT
1 CATTTATGCTAGCCCGAATT
95193747 CATTTATGCTAGCCCGAATT
1 CATTTATGCTAGCCCGAATT
*
95193767 CCTTTA
1 CATTTA
95193773 AGCATATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.37
Consensus pattern (20 bp):
CATTTATGCTAGCCCGAATT
Found at i:95194430 original size:20 final size:19
Alignment explanation
Indices: 95194401--95194443 Score: 68
Period size: 20 Copynumber: 2.2 Consensus size: 19
95194391 TCTTTGAAAA
*
95194401 AATTTCCCTACGAACCGTC
1 AATTTCCCTACAAACCGTC
95194420 AATTNTCCCTACAAACCGTC
1 AATT-TCCCTACAAACCGTC
95194440 AATT
1 AATT
95194444 CCCGGGGCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.30, C:0.33, G:0.07, T:0.28
Consensus pattern (19 bp):
AATTTCCCTACAAACCGTC
Found at i:95195830 original size:18 final size:18
Alignment explanation
Indices: 95195805--95195897 Score: 123
Period size: 18 Copynumber: 5.2 Consensus size: 18
95195795 ACCGTTTACG
*
95195805 GTACTATTTACGTATACA
1 GTACTATTCACGTATACA
* *
95195823 GCACTATTTACGTATACA
1 GTACTATTCACGTATACA
*
95195841 GTACTATTCACGTATACG
1 GTACTATTCACGTATACA
* *
95195859 GTACTGTTCACGTATACG
1 GTACTATTCACGTATACA
*
95195877 GTACTGTTCACGTATACA
1 GTACTATTCACGTATACA
95195895 GTA
1 GTA
95195898 GTTGGGATTG
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 69 1.00
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.34
Consensus pattern (18 bp):
GTACTATTCACGTATACA
Found at i:95203307 original size:31 final size:29
Alignment explanation
Indices: 95203250--95203307 Score: 71
Period size: 31 Copynumber: 1.9 Consensus size: 29
95203240 GTAAATTTAT
* * *
95203250 AATTTAGTCTCTATATTTTTGTTTTCATG
1 AATTTAGTCTCTACATTTTAGATTTCATG
95203279 AATTTAGTCCCTCTACATTTTAGATTTCA
1 AATTTAGT--CTCTACATTTTAGATTTCA
95203308 AAATTAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 8 0.33
31 16 0.67
ACGTcount: A:0.24, C:0.16, G:0.09, T:0.52
Consensus pattern (29 bp):
AATTTAGTCTCTACATTTTAGATTTCATG
Found at i:95204347 original size:16 final size:15
Alignment explanation
Indices: 95204326--95204373 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
95204316 GATGTGAATA
95204326 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
95204342 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
95204357 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
95204373 A
1 A
95204374 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:95204349 original size:24 final size:24
Alignment explanation
Indices: 95204322--95204377 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
95204312 TAATGATGTG
*
95204322 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
95204346 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
95204370 AATAATAA
1 AATAATAA
95204378 TAATTAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:95204356 original size:8 final size:8
Alignment explanation
Indices: 95204322--95204373 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
95204312 TAATGATGTG
*
95204322 AATAATAA
1 AATATTAA
95204330 AATATATAA
1 AATAT-TAA
95204339 AATA-TAA
1 AATATTAA
95204346 AATATTAA
1 AATATTAA
*
95204354 AATATCAA
1 AATATTAA
*
95204362 AATATTAG
1 AATATTAA
95204370 AATA
1 AATA
95204374 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:95204684 original size:30 final size:30
Alignment explanation
Indices: 95204649--95204844 Score: 278
Period size: 30 Copynumber: 6.7 Consensus size: 30
95204639 GTACAAGTGA
*
95204649 TGGTGGAAAAGGTGTGGCTAGTGGAGTTGG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
*
95204679 TGGTGGAAAAAGAGTGGCTAGTGGAGTTGG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
*
95204709 TGGTGGAAAAGGTGTGGCTAGTGGAGTTGG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
*
95204739 TGGTGGAAAA--AG-AG-T-G-GGAGTTGG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
* *
95204763 TGGTGGAAAAAGAGTGGCTAGTGGAGTTAG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
* *
95204793 TGGTGGAAAATGTGTGGCTAGTGGAGTTGG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
95204823 TGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGAAAAGGAGTGGCTAGT
95204845 TGAGAAAAGT
Statistics
Matches: 147, Mismatches: 13, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
24 18 0.12
25 1 0.01
26 3 0.02
27 2 0.01
28 2 0.01
29 1 0.01
30 120 0.82
ACGTcount: A:0.24, C:0.03, G:0.47, T:0.25
Consensus pattern (30 bp):
TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
Found at i:95204760 original size:24 final size:24
Alignment explanation
Indices: 95204731--95204779 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
95204721 TGTGGCTAGT
95204731 GGAGTTGGTGGTGGAAAAAGAGTG
1 GGAGTTGGTGGTGGAAAAAGAGTG
95204755 GGAGTTGGTGGTGGAAAAAGAGTG
1 GGAGTTGGTGGTGGAAAAAGAGTG
95204779 G
1 G
95204780 CTAGTGGAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.29, C:0.00, G:0.51, T:0.20
Consensus pattern (24 bp):
GGAGTTGGTGGTGGAAAAAGAGTG
Found at i:95204796 original size:84 final size:84
Alignment explanation
Indices: 95204671--95204839 Score: 311
Period size: 84 Copynumber: 2.0 Consensus size: 84
95204661 TGTGGCTAGT
*
95204671 GGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 GGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTAGTGGTGGAAAAGGTGTGGCTAGTGGAGT
95204736 TGGTGGTGGAAAAAGAGTG
66 TGGTGGTGGAAAAAGAGTG
*
95204755 GGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTAGTGGTGGAAAATGTGTGGCTAGTGGAGT
1 GGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTAGTGGTGGAAAAGGTGTGGCTAGTGGAGT
*
95204820 TGGTGGTGGAAAAGGAGTG
66 TGGTGGTGGAAAAAGAGTG
95204839 G
1 G
95204840 CTAGTTGAGA
Statistics
Matches: 82, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
84 82 1.00
ACGTcount: A:0.25, C:0.02, G:0.49, T:0.24
Consensus pattern (84 bp):
GGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTAGTGGTGGAAAAGGTGTGGCTAGTGGAGT
TGGTGGTGGAAAAAGAGTG
Found at i:95205613 original size:14 final size:14
Alignment explanation
Indices: 95205594--95205643 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
95205584 GAGTTGATTT
* *
95205594 TTGAAAAATATAAA
1 TTGAAAAACAGAAA
95205608 TTGAAAAAACAGAAA
1 TTG-AAAAACAGAAA
*
95205623 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
95205637 TT-AAAAA
1 TTGAAAAA
95205644 GACCTCAGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
13 4 0.13
14 15 0.48
15 12 0.39
ACGTcount: A:0.64, C:0.04, G:0.12, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:95205759 original size:73 final size:75
Alignment explanation
Indices: 95205666--95205867 Score: 309
Period size: 76 Copynumber: 2.7 Consensus size: 75
95205656 TGAGCCGAGA
* *
95205666 CTCAACTCACCTCTCGCAATATGAGTT-A-ATTTTTGACAAACAGAAATTGAAATTACCTCAGCG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAATTGAAAATACCTCAGCG
95205729 TGTCCCAAGG
66 TGTCCCAAGG
* * * *
95205739 CTCAACTCACCTTTCACAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAATACCTCAGC
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAA-TTGAAAATACCTCAGC
*
95205804 GTGTCCTAAGG
65 GTGTCCCAAGG
*
95205815 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACAAACAGAAATTGAA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAATTGAA
95205868 GAACAGAAAT
Statistics
Matches: 114, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
73 25 0.22
74 1 0.01
75 20 0.18
76 68 0.60
ACGTcount: A:0.34, C:0.22, G:0.13, T:0.31
Consensus pattern (75 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAATTGAAAATACCTCAGCG
TGTCCCAAGG
Found at i:95205874 original size:14 final size:14
Alignment explanation
Indices: 95205855--95205881 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
95205845 TTTTTTTACA
95205855 AACAGAAATTGAAG
1 AACAGAAATTGAAG
95205869 AACAGAAATTGAA
1 AACAGAAATTGAA
95205882 AAGACCTCAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.07, G:0.19, T:0.15
Consensus pattern (14 bp):
AACAGAAATTGAAG
Found at i:95205989 original size:73 final size:73
Alignment explanation
Indices: 95205869--95207150 Score: 941
Period size: 73 Copynumber: 16.9 Consensus size: 73
95205859 GAAATTGAAG
** ** *
95205869 AACAGAAATTGAAAAGACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATGAGTTA
1 AACAGAAATTGAAATTACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
95205934 AATTTTGACA
64 ATTTTTGACA
* *
95205944 AACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAAA
1 AACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
95206009 TTTTGACA
66 TTTTGACA
95206017 AACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
95206082 TTTTGAAA
66 TTTTGACA
* * * *
95206090 AACAGAAATTTAAAAATACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AACAGAAA-TTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* *
95206155 TTTTTTTTTACG
65 ---TTTTTGACA
*** *** * * * *
95206167 AACAGAAATTGAAGA--ACAGAAATTGAAAAGACCTCAGCATGTGAGC-CGAGGCTCAACTCAC-
1 AACAGAAATTGAA-ATTAC-CTCA--G-CGTGTCC-C-G-A---G-GCTC-A-ACTCACCTCTCG
* * ** ****
95206228 C--TCTCGCAATATGAGTTAATTTTT
52 CAATAT-G-AGT-TGA-TTTTTGACA
*
95206252 GACA-AACA--GAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
1 AACAGAA-ATTG-AA-----ATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
*
95206314 AGTTGATTTTTGAAA
59 AGTTGATTTTTGACA
* * * *
95206329 AAAAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AACAGAAA-TTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* *
95206394 TTTTTTTTACG
65 --TTTTTGACA
* *** *** * * * * *
95206405 AACAAAAATTGAAGA--ACAGAAATTGAAAAGACCTCAGCATGTGAGC-CGAGGCTTAACTCAC-
1 AACAGAAATTGAA-ATTAC-CTCA--G-CGTGTCC-C-G-A---G-GCTC-A-ACTCACCTCTCG
* * ** ****
95206466 C--TCTCGCAATATGAGTTAATTTTT
52 CAATAT-G-AGT-TGA-TTTTTGACA
*
95206490 GACA-AACA--GAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
1 AACAGAA-ATTG-AA-----ATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
*
95206552 AGTTGGTTTTTGACA
59 AGTTGATTTTTGACA
*
95206567 AACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTCGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
95206632 TTTTGAAA
66 TTTTGACA
* * * *
95206640 AACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAATTCACCTCTCGCAATATGAGTTGA
1 AACAGAAA-TTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* *
95206705 TTTTTTTTACG
65 --TTTTTGACA
** **
95206716 AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AACAGAAATTGAAATTACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
95206781 ATTTTTGACA
64 ATTTTTGACA
** *
95206791 AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGGGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
95206856 TTTTGACA
66 TTTTGACA
* ** *
95206864 AACAAAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGGAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
95206929 TTTTGACA
66 TTTTGACA
* *
95206937 AACAGAAATTGAAATTAACTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
1 AACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
95207001 TTTT-AAA
66 TTTTGACA
* * * * *
95207008 AACAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTTGCAATATGAGCT-
1 AACAGAAATTGAAATTACCTCAGCGTGT--CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* **
95207072 ACTTTTGATG
64 ATTTTTGACA
* * ** *
95207082 AACATAAATTAAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
95207147 TTTT
66 TTTT
95207151 TTTGAAAATC
Statistics
Matches: 965, Mismatches: 161, Indels: 164
0.75 0.12 0.13
Matches are distributed among these distances:
71 28 0.03
72 34 0.04
73 402 0.42
74 179 0.19
75 72 0.07
76 32 0.03
77 65 0.07
78 30 0.03
79 18 0.02
80 7 0.01
81 6 0.01
82 1 0.00
83 6 0.01
84 15 0.02
85 27 0.03
86 22 0.02
87 13 0.01
88 2 0.00
89 2 0.00
90 4 0.00
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (73 bp):
AACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTGACA
Found at i:95206158 original size:146 final size:146
Alignment explanation
Indices: 95205869--95207150 Score: 1541
Period size: 146 Copynumber: 8.5 Consensus size: 146
95205859 GAAATTGAAG
* *
95205869 AACAGAAATTGAAAAGACCTCAGCATGTGAACC-GAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AACAGAAATTGAAAATACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
95205933 AAATTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAA
63 GATTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAA
* *
95205998 TATGAGTTAAATTTTGACA
128 TATGAGTTGATTTTTGACA
* *
95206017 AACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* * * *
95206082 TTTTGAAAAACAGAAATTTAAAAATACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
66 TTTTGACAAACAGAAA-TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATA
95206147 TGAGTTGATTTTTTTTTACGAACAGAAATTGAA
130 TGAGTTGA----TTTTT--G-AC---------A
* *
95206180 GAACAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAGT
1 -AACAGAAATTGAAAATACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* *
95206244 TAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCA
62 TGATTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCA
*
95206309 ATATGAGTTGATTTTTGAAA
127 ATATGAGTTGATTTTTGACA
* *
95206329 AAAAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AACAGAAA-TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* ** *
95206394 TTTTTTTTACGAACAAAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTT
65 ---TTTTT--G-AC---------A-AACAGAAATTGAAAATACCTCAGC--GTGTCCCGAGGCTC
*
95206459 AACTCACCTCTCGCAATATGAGTTAATTTTTGACA
112 AACTCACCTCTCGCAATATGAGTTGATTTTTGACA
* * *
95206494 AACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGGT
1 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
95206559 TTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATAT
66 TTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATAT
* *
95206624 GAGTCGATTTTTGAAA
131 GAGTTGATTTTTGACA
* *
95206640 AACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAATTCACCTCTCGCAATATGAGTTGA
1 AACAGAAA-TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* * * **
95206705 TTTTTTTTACGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGC
65 --TTTTTGACAAACAGAAATTGAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGC
95206770 AATATGAGTTGATTTTTGACA
126 AATATGAGTTGATTTTTGACA
* * *
95206791 AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGGGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* * ** *
95206856 TTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGGAATAT
66 TTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATAT
95206921 GAGTTGATTTTTGACA
131 GAGTTGATTTTTGACA
* *
95206937 AACAGAAATTGAAATTAACTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
1 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* * * *
95207001 TTTT-AAAAACAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTTGCAAT
66 TTTTGACAAACAGAAATTGAAAATACCTCAGCGTGT--CCCGAGGCTCAACTCACCTCTCGCAAT
* * **
95207065 ATGAGCT-ACTTTTGATG
129 ATGAGTTGATTTTTGACA
* *
95207082 AACATAAATT-AAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AACAGAAATTGAAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
95207146 TTTTT
65 TTTTT
95207151 TTTGAAAATC
Statistics
Matches: 988, Mismatches: 95, Indels: 104
0.83 0.08 0.09
Matches are distributed among these distances:
144 31 0.03
145 69 0.07
146 239 0.24
147 137 0.14
148 79 0.08
149 45 0.05
150 56 0.06
151 57 0.06
152 1 0.00
153 3 0.00
154 2 0.00
158 3 0.00
159 2 0.00
161 10 0.01
162 1 0.00
163 23 0.02
164 74 0.07
165 103 0.10
166 51 0.05
167 2 0.00
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (146 bp):
AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTTGACA
Found at i:95206185 original size:14 final size:14
Alignment explanation
Indices: 95206166--95206193 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
95206156 TTTTTTTTAC
95206166 GAACAGAAATTGAA
1 GAACAGAAATTGAA
95206180 GAACAGAAATTGAA
1 GAACAGAAATTGAA
95206194 AAGACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:95206510 original size:550 final size:543
Alignment explanation
Indices: 95205615--95207150 Score: 2301
Period size: 550 Copynumber: 2.9 Consensus size: 543
95205605 AAATTGAAAA
* *
95205615 AACAGAAATTGAA-AAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTC
1 AACAGAAATTGAAGAA-CAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTC
*
95205679 TCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCAAGGCTCAA
65 TCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAA
* * *
95205744 CTCACCTTTCACAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTC
130 CTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAAAAGAAATTTAAAAATACCTCAGCGTGTC
* *
95205809 CTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACAAACAGAAATTGAAGAACAG
193 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACGAACA-AAATTGAAGAACAG
95205874 AAATTGAAAAGACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATGAGTTAAATTT
257 AAATTGAAAAGACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATGAGTT-AATTT
95205939 TGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
321 TGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
95206004 TTAAATTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGC
386 TT-AATTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGC
*
95206069 AATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTTAGCGTGTCCTGAGGCTCAACTC
450 AATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTC
95206134 ACCTCTCGCAATATGAGTTGATTTTTTTTT
515 ACCTCTCGCAATATGAGTTGA-TTTTTTTT
95206164 ACGAACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACC
1 ---AACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACC
95206229 TCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTC
63 TCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTC
95206294 AACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAAGAAATTTAAAAATACCTCAGCGTGTC
128 AACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAAGAAATTTAAAAATACCTCAGCGTGTC
95206359 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACGAACAAAAATTGAAGAACAG
193 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACGAAC-AAAATTGAAGAACAG
* *
95206424 AAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTTAACTCACCTCTCGCAATATGAGTTAATTTT
257 AAATTGAAAAGACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATGAGTTAA-TTT
95206489 TGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
321 TGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
**
95206554 TTGGTTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGC
386 TT-AATTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGC
* *
95206619 AATATGAGTCGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAATTC
450 AATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTC
95206684 ACCTCTCGCAATATGAGTTGATTTTTTTT
515 ACCTCTCGCAATATGAGTTGATTTTTTTT
95206713 -AC----------GAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
1 AACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
* **
95206767 CGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAAC
66 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
* * * * *
95206832 TCACCTCTCGCAATATGGGTTGATTTTTGACAAACAA-AAA-TTGAAATTACCTCAGCGTGTCTT
131 TCACCTCTCGCAATATGAGTTGATTTTTGA-AAAAAAGAAATTTAAAAATACCTCAGCGTGTCCT
*
95206895 GAGGCTCAACTCACCTCTCGGAATATGAGTTGA---TTTTT--G-AC--------A-AACAGAAA
195 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACGAACAAAATTGAAGAACAGAAA
** * * *
95206945 TTGAAATTAACTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT-A
260 TTGAAAAGACCTCAGCATGTGAACC-GAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTGA
* * * * * *
95207006 AAAACAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTTGCAATATGAGC
324 CAAACAGAAATTGAAATTACCTCAGCGTGT--CCCGAGGCTCAACTCACCTCTCGCAATATGAGT
* ** * * ** *
95207071 TACTTTTGATGAACATAAATTAAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
387 TAATTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAA
95207136 TATGAGTTGATTTTT
452 TATGAGTTGATTTTT
95207151 TTTGAAAATC
Statistics
Matches: 930, Mismatches: 47, Indels: 51
0.90 0.05 0.05
Matches are distributed among these distances:
514 29 0.03
515 75 0.08
516 64 0.07
518 21 0.02
519 1 0.00
528 2 0.00
529 1 0.00
531 5 0.01
534 52 0.06
535 146 0.16
536 5 0.01
545 2 0.00
549 10 0.01
550 369 0.40
551 1 0.00
552 145 0.16
553 2 0.00
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.27
Consensus pattern (543 bp):
AACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
TCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAAGAAATTTAAAAATACCTCAGCGTGTCCTG
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACGAACAAAATTGAAGAACAGAAAT
TGAAAAGACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTGACA
AACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAAT
TTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
CGCAATATGAGTTGATTTTTTTT
Found at i:95208174 original size:48 final size:48
Alignment explanation
Indices: 95208098--95208200 Score: 179
Period size: 48 Copynumber: 2.1 Consensus size: 48
95208088 GATTCGACAA
*
95208098 CTCTTTCCCATCCATCTCAGTAATGATCAAAGCTCCTCCTGAGAATGC
1 CTCTTTCCCATCCATCTCAGTAAGGATCAAAGCTCCTCCTGAGAATGC
*
95208146 CTCTTTCCCATCCATCTCGGTAAGGATCAAAGCTCCTCCTGAGAATGC
1 CTCTTTCCCATCCATCTCAGTAAGGATCAAAGCTCCTCCTGAGAATGC
95208194 CTTCTTT
1 C-TCTTT
95208201 ACGACGTACG
Statistics
Matches: 52, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
48 47 0.90
49 5 0.10
ACGTcount: A:0.22, C:0.33, G:0.14, T:0.31
Consensus pattern (48 bp):
CTCTTTCCCATCCATCTCAGTAAGGATCAAAGCTCCTCCTGAGAATGC
Found at i:95222275 original size:46 final size:46
Alignment explanation
Indices: 95222215--95222570 Score: 545
Period size: 46 Copynumber: 7.7 Consensus size: 46
95222205 TGCCATAATG
* * * *
95222215 TCTTTCAACTATGGTATTACTCATTTTC-T-TCCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCATAT-CAGGTTGCCATGGTA
** **
95222261 TCTTTCAACCATGGTCTTATTCATTTCATATCACATTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
*
95222307 TCTTTCAACCATGGTCTTACACATTTCATATCAGATTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
* *
95222353 TCTTTCAACCATGATCTTACACACTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
*
95222399 TCTTTCAACCATAGTCTTACACATTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
*
95222445 TCTTTCAACCATGGTCTGACACATTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
* *
95222491 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTACTATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
95222537 TCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TCTTTCAACCATGGTCTTACACATTTCATATCAG
95222571 AGAGCACACT
Statistics
Matches: 289, Mismatches: 19, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
45 4 0.01
46 284 0.98
47 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.38
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
Found at i:95224993 original size:30 final size:30
Alignment explanation
Indices: 95224926--95224993 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
95224916 CACCCTTAAA
* * *
95224926 ATATTTGCACTATTAGTCCTTCAACTTTTC
1 ATATTTACACTATTAATCCTTCAAATTTTC
*
95224956 ATATTTACACT-TTAATCCTTCAAATTTTG
1 ATATTTACACTATTAATCCTTCAAATTTTC
95224985 AGTATTTAC
1 A-TATTTAC
95224994 TCTTGGGCCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.28, C:0.19, G:0.06, T:0.47
Consensus pattern (30 bp):
ATATTTACACTATTAATCCTTCAAATTTTC
Found at i:95233352 original size:14 final size:14
Alignment explanation
Indices: 95233333--95233367 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
95233323 CGTTGAGGTA
*
95233333 TTTTCAATTTCTAT
1 TTTTCAATTTATAT
*
95233347 TTTTCAGTTTATAT
1 TTTTCAATTTATAT
95233361 TTTTCAA
1 TTTTCAA
95233368 AAATCAACTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.23, C:0.11, G:0.03, T:0.63
Consensus pattern (14 bp):
TTTTCAATTTATAT
Found at i:95233469 original size:89 final size:88
Alignment explanation
Indices: 95233270--95234029 Score: 543
Period size: 89 Copynumber: 8.5 Consensus size: 88
95233260 TGACAGTTTA
* * * *
95233270 TATTTTTCAAAAAATCAATTCATATTACGAGA-AGTGAGTTGAGCCTCAGG--ACACGTTGAGGT
1 TATTTTTC-AAAAATCAACTCATATTGCGAGAGA-TGAGTTGAGCCTCAGGTCACATGCTGAGGT
* * * *
95233332 ATTTTCAATTTCTATTTTTCAGTTTA
64 ATTTTCAAATTCT-GTTTTCAATTTC
* *
95233358 TATTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTAAGGTCACATGCCGAGGTAT
1 TATTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGTCACATGCTGAGGTAT
95233423 TTTCAAATTCTGTTTT-AATTTC
66 TTTCAAATTCTGTTTTCAATTTC
* * * * * *
95233445 TACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGTGTTGAGC
1 TATTTTTC--AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGG-TCACATGCTGAGG
* * * *
95233509 TACTTTC-AATTTTCGTTTTTAATGTC
63 TATTTTCAAATTCT-GTTTTCAATTTC
* * * *
95233535 TGTTTTT---AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-G-AACACGCTGAGGTAT
1 TATTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGTCACATGCTGAGGTAT
* * * *
95233595 TTTTAATTTATAT-TTTTTTCAATCTA
66 TTTCAA---AT-TCTGTTTTCAATTTC
* * * * *
95233621 TATTTTTCAAAAATCAACTTATATTACGAGAGATGAGTTGAGCCTCGGGGCAC--GCTGAGGTAA
1 TATTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGTCACATGCTGAGGTAT
* *
95233684 TTCCAATTTCTGCTTTTCAATTTC
66 TTTCAAATTCTG-TTTTCAATTTC
** * * *
95233708 TGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCACATGCCGAGGTAT
1 TATTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGTCACATGCTGAGGTAT
*
95233773 TTTCAAATTCTGTCTTTCAAACTCTGTTTT
66 TTTCAAATTCTGT-TTTC-AA-----TTTC
**** *** * * *
95233803 TAATTTTT-AGTTTTCAAAAACTCAACTCATATTGCGAGAAGTGAGTTGAGCCT-TGGCTCGCAT
1 T-ATTTTTCAAAAATC---AACTC-A-T-ATTGCGAGAGA--TGAGTTGAGCCTCAGG-TCACAT
* * *
95233866 GCCGAGGTATTTTCAATTTCTGTTTTTAATTTC
56 GCTGAGGTATTTTCAAATTCTGTTTTCAATTTC
* ** * *
95233899 TGTTTTTCAAAAATCAACTCATATTATGAGAAATGAGTTAAGCCTC-GGCTCACATGCTGAGGTA
1 TATTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGG-TCACATGCTGAGGTA
* *
95233963 TTTCCAATTTCTGTTTT-AA-TTC
65 TTTTCAAATTCTGTTTTCAATTTC
*
95233985 -ATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 TAT-TTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCT
95234030 TTTAATTTCT
Statistics
Matches: 533, Mismatches: 96, Indels: 88
0.74 0.13 0.12
Matches are distributed among these distances:
83 12 0.02
84 1 0.00
85 38 0.07
86 56 0.11
87 106 0.20
88 65 0.12
89 145 0.27
90 20 0.04
91 3 0.01
92 1 0.00
93 5 0.01
95 12 0.02
96 11 0.02
98 5 0.01
99 1 0.00
100 1 0.00
101 8 0.02
102 5 0.01
103 38 0.07
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.38
Consensus pattern (88 bp):
TATTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGTCACATGCTGAGGTAT
TTTCAAATTCTGTTTTCAATTTC
Found at i:95233572 original size:174 final size:172
Alignment explanation
Indices: 95233273--95234030 Score: 631
Period size: 174 Copynumber: 4.2 Consensus size: 172
95233263 CAGTTTATAT
* * * * * * *
95233273 TTTTCAAAAAATCAATTCATATTACGAGAAGTGAGTTGAGCCTCAGG-ACAC-GTTGAGGTATTT
1 TTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACTGCTGAGGTAATT
* * * * *
95233336 TCAATTTCTATTTTTCAGTTTATATTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGC
64 TCAATTTCTGTTTTT-AATTTCTGTTTTT---AAATCAACTCATATTGCGAGAGATGAGTTAAGC
* *
95233401 CTAAGGTCACATGCCGAGGTATTTTCAAATTCTGTTTT-AATTTCTAC
125 CTCAGGTCACATGCCGAGGTATTTTCAAATTCTGTTTTCAATTTCTAA
* * *
95233448 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGTTGAGCTACT
1 TTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCAC-TGCTGAGGTAAT
* * *
95233513 TTCAATTT-TCGTTTTTAATGTCTGTTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
63 TTCAATTTCT-GTTTTTAATTTCTGTTTTTAAATCAACTCATATTGCGAGAGATGAGTTAAGCCT
* * * * * * * *
95233577 CA-G-AACACGCTGAGGTATTTTTAATTTATAT-TTTTTTCAATCTATAT
127 CAGGTCACATGCCGAGGTATTTTCAA---AT-TCTGTTTTCAATTTCTAA
* * * * ** *
95233624 TTTTCAAAAATCAACTTATATTACGAGAGATGAGTTGAGCCTCGGGGCAC-GCTGAGGTAATTCC
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACTGCTGAGGTAATTTC
* * *
95233688 AATTTCTGCTTTTCAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCT
66 AATTTCTG-TTTTTAATTTCTG-TTTT--TAAATCAACTCATATTGCGAGAGATGAGTTAAGCCT
*
95233753 CAGGTCACATGCCGAGGTATTTTCAAATTCTGTCTTTCAAACTCTGTTTTTAATTTTTA
127 CAGGTCACATGCCGAGGTATTTTCAAATTCTGT-TTTC-AA-----TTTCT-A-----A
* * * *
95233812 GTTTTCAAAAACTCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCGCATGCCGAGGTATT
1 -TTTTCAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCAC-TGCTGAGGTAAT
** *
95233877 TTCAATTTCTGTTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTATGAGAAATGAGTTAAGC
63 TTCAATTTCTGTTTTTAATTTCTGTTTTT---AAATCAACTCATATTGCGAGAGATGAGTTAAGC
* * * *
95233942 CTC-GGCTCACATGCTGAGGTATTTCCAATTTCTGTTTT-AA-TTC-ATG
125 CTCAGG-TCACATGCCGAGGTATTTTCAAATTCTGTTTTCAATTTCTA-A
95233988 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
95234031 TTAATTTCTG
Statistics
Matches: 477, Mismatches: 67, Indels: 79
0.77 0.11 0.13
Matches are distributed among these distances:
172 33 0.07
173 13 0.03
174 111 0.23
175 28 0.06
176 91 0.19
177 13 0.03
178 39 0.08
180 1 0.00
182 5 0.01
183 1 0.00
188 2 0.00
189 10 0.02
190 41 0.09
191 70 0.15
192 19 0.04
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.38
Consensus pattern (172 bp):
TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACTGCTGAGGTAATTTC
AATTTCTGTTTTTAATTTCTGTTTTTAAATCAACTCATATTGCGAGAGATGAGTTAAGCCTCAGG
TCACATGCCGAGGTATTTTCAAATTCTGTTTTCAATTTCTAA
Found at i:95233622 original size:16 final size:15
Alignment explanation
Indices: 95233594--95233627 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
95233584 CGCTGAGGTA
*
95233594 TTTTTAATTTATATT
1 TTTTTAATCTATATT
95233609 TTTTTCAATCTATATT
1 TTTTT-AATCTATATT
95233625 TTT
1 TTT
95233628 CAAAAATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.71
Consensus pattern (15 bp):
TTTTTAATCTATATT
Found at i:95233706 original size:14 final size:14
Alignment explanation
Indices: 95233687--95233717 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
95233677 GAGGTAATTC
95233687 CAATTTCTGCTTTT
1 CAATTTCTGCTTTT
95233701 CAATTTCTGCTTTT
1 CAATTTCTGCTTTT
95233715 CAA
1 CAA
95233718 AAATCAACTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.19, C:0.23, G:0.06, T:0.52
Consensus pattern (14 bp):
CAATTTCTGCTTTT
Found at i:95233745 original size:261 final size:263
Alignment explanation
Indices: 95233279--95234030 Score: 808
Period size: 261 Copynumber: 2.8 Consensus size: 263
95233269 ATATTTTTCA
* * * *
95233279 AAAAATCAATTCATATTACGAGAAGTGAGTTGAGCCTCAGGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGAACACGCTGAGGTATTTTCAATTT-
* * **
95233344 TA-TTTTTCAGTTTATATTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTAAGGT
65 TATTTTTTCAATTTATATTTTTCAAAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCGGGT
* * * *
95233408 CACATGCCGAGGTATTTTCAAATTCTGTTTTAATTTCTACTTTTCAAAAAAATCAACTCATATTG
130 CACA-GCTGAGGTATTTCCAATTTCTGTTTTAATTTCTGCTTTTC--AAAAATCAACTCATATTG
* **
95233473 CGAGAGGTGAGTTGAGCCTTGGCTCACGTGTTGAGCTACTTTC-AA-TTT-TC-GTTTTTAATGT
192 CGAGAGGTGAGTTGAGCCTTGG-TCACATGCCGAGCTACTTTCAAATTTTATCTGTTTTTAATGT
95233534 CT-GTTTT
256 CTAGTTTT
* * *
95233541 -TAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGGTATTTTTAATTTA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGAACACGCTGAGGTATTTTCAATTT-
* *
95233605 TATTTTTTTCAATCTATATTTTTCAAAAATCAACTTATATTACGAGAGATGAGTTGAGCCTCGGG
65 TA-TTTTTTCAATTTATATTTTTCAAAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCGGG
* *
95233670 GCAC-GCTGAGGTAATTCCAATTTCTGCTTTTCAATTTCTGCTTTTCAAAAATCAACTCATATTG
129 TCACAGCTGAGGTATTTCCAATTTCTG-TTTT-AATTTCTGCTTTTCAAAAATCAACTCATATTG
* * * *
95233734 CGAGAGGTGAGTTAAGCCTCAGGTCACATGCCGAGGTATTTTCAAATTCTGTCTTTCAAACTCTG
192 CGAGAGGTGAGTTGAGCCT-TGGTCACATGCCGAGCTACTTTCAAA-----T-TTT---A-TCTG
* *
95233799 TTTTTAATTTTTAGTTTT
246 TTTTTAATGTCTAGTTTT
** ** * *
95233817 CAAAAACTCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCGCATGCCGAGGTATTTTCAA
1 -AAAAA-TCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAG--AACACGCTGAGGTATTTTCAA
* * * * * *
95233882 TTTCT-GTTTTT-AATTTCTGTTTTTCAAAAATCAACTCATATTATGAGAAATGAGTTAAGCCTC
62 TTT-TATTTTTTCAATTTATATTTTTCAAAAATCAACTCATATTACGAGAGATGAGTTGAGCCTC
*
95233945 GGCTCACATGCTGAGGTATTTCCAATTTCTGTTTTAA-TTCATG-TTTTCAAAAATCAACTCATA
126 GGGTCACA-GCTGAGGTATTTCCAATTTCTGTTTTAATTTC-TGCTTTTCAAAAATCAACTCATA
95234008 TTGCGAGAGGTGAGTTGAGCCTT
189 TTGCGAGAGGTGAGTTGAGCCTT
95234031 TTAATTTCTG
Statistics
Matches: 410, Mismatches: 52, Indels: 42
0.81 0.10 0.08
Matches are distributed among these distances:
261 127 0.31
262 8 0.02
263 71 0.17
269 3 0.01
274 2 0.00
275 11 0.03
276 5 0.01
277 44 0.11
278 57 0.14
279 41 0.10
280 21 0.05
281 20 0.05
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.38
Consensus pattern (263 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGAACACGCTGAGGTATTTTCAATTTT
ATTTTTTCAATTTATATTTTTCAAAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCGGGTC
ACAGCTGAGGTATTTCCAATTTCTGTTTTAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAG
AGGTGAGTTGAGCCTTGGTCACATGCCGAGCTACTTTCAAATTTTATCTGTTTTTAATGTCTAGT
TTT
Found at i:95233880 original size:103 final size:101
Alignment explanation
Indices: 95233711--95233905 Score: 284
Period size: 103 Copynumber: 1.9 Consensus size: 101
95233701 CAATTTCTGC
*
95233711 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCACATGCCGAGGTATTTT
1 TTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTCAGGTCACATGCCGAGGTATTTT
95233776 CAAATTCTGTCTTTCAAACTCTGTTTTTAATTTTTAG
66 CAAATTCTGT-TTTCAAACTCTGTTTTTAATTTTTAG
* * *
95233813 TTTTCAAAAACTCAACTCATATTGCGAGAAGTGAGTTGAGCCT-TGGCTCGCATGCCGAGGTATT
1 TTTTCAAAAA-TCAACTCATATTGCGAGAAGTGAGTTAAGCCTCAGG-TCACATGCCGAGGTATT
* * **
95233877 TTCAATTTCTGTTTTTAATTTCTGTTTTT
64 TTCAAATTCTGTTTTCAAACTCTGTTTTT
95233906 CAAAAATCAA
Statistics
Matches: 83, Mismatches: 8, Indels: 4
0.87 0.08 0.04
Matches are distributed among these distances:
102 26 0.31
103 57 0.69
ACGTcount: A:0.25, C:0.17, G:0.17, T:0.40
Consensus pattern (101 bp):
TTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTCAGGTCACATGCCGAGGTATTTT
CAAATTCTGTTTTCAAACTCTGTTTTTAATTTTTAG
Found at i:95233896 original size:13 final size:13
Alignment explanation
Indices: 95233875--95233905 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
95233865 TGCCGAGGTA
*
95233875 TTTTCAATTTCTG
1 TTTTTAATTTCTG
95233888 TTTTTAATTTCTG
1 TTTTTAATTTCTG
95233901 TTTTT
1 TTTTT
95233906 CAAAAATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.13, C:0.10, G:0.06, T:0.71
Consensus pattern (13 bp):
TTTTTAATTTCTG
Found at i:95233943 original size:88 final size:87
Alignment explanation
Indices: 95233795--95234029 Score: 303
Period size: 88 Copynumber: 2.7 Consensus size: 87
95233785 TCTTTCAAAC
* * * * *
95233795 TCTGTTTTTAATTTTTAGTTTTCAAAAACTCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGC
1 TCTGTTTTTAATTTCT-GTTTTCAAAAA-TCAACTCATATTACGAGAAATGAGTTAAGCCTCGGC
* *
95233860 TCGCATGCCGAGGTATTTTCAATT
64 TCACATGCCGAGGTATTTCCAATT
*
95233884 TCTGTTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTATGAGAAATGAGTTAAGCCTCGGCT
1 TCTGTTTTTAATTTCTG-TTTTCAAAAATCAACTCATATTACGAGAAATGAGTTAAGCCTCGGCT
*
95233949 CACATGCTGAGGTATTTCCAATT
65 CACATGCCGAGGTATTTCCAATT
* ** *
95233972 TCTG-TTTTAA-TTCATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 TCTGTTTTTAATTTC-TGTTTTCAAAAATCAACTCATATTACGAGAAATGAGTTAAGCCT
95234030 TTTAATTTCT
Statistics
Matches: 130, Mismatches: 14, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
86 40 0.31
87 8 0.06
88 57 0.44
89 25 0.19
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.39
Consensus pattern (87 bp):
TCTGTTTTTAATTTCTGTTTTCAAAAATCAACTCATATTACGAGAAATGAGTTAAGCCTCGGCTC
ACATGCCGAGGTATTTCCAATT
Found at i:95235347 original size:22 final size:23
Alignment explanation
Indices: 95235308--95235350 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
95235298 AATCCTTCCC
95235308 CTCTCCCTCCTCTCTCTTTTTCT
1 CTCTCCCTCCTCTCTCTTTTTCT
* *
95235331 CTCTTCCT-CTCTTTCTTTTT
1 CTCTCCCTCCTCTCTCTTTTT
95235351 TTTTCTTCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.00, C:0.42, G:0.00, T:0.58
Consensus pattern (23 bp):
CTCTCCCTCCTCTCTCTTTTTCT
Found at i:95242214 original size:38 final size:39
Alignment explanation
Indices: 95242157--95242241 Score: 120
Period size: 38 Copynumber: 2.2 Consensus size: 39
95242147 AACTTAATGT
* *
95242157 CTAGCAAGCCTTGTGCCGGTGATAAATTCAGCTT-TATAC
1 CTAGCAGGCCTTGTGCCGGTGATAAATTCAGGTTAT-TAC
*
95242196 CTAGCAGGCC-TGTGCCGGTGATAAGTTCAGGTTATTAC
1 CTAGCAGGCCTTGTGCCGGTGATAAATTCAGGTTATTAC
95242234 CTAGCAGG
1 CTAGCAGG
95242242 TTAATTGCCG
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
38 32 0.76
39 10 0.24
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (39 bp):
CTAGCAGGCCTTGTGCCGGTGATAAATTCAGGTTATTAC
Found at i:95245395 original size:28 final size:27
Alignment explanation
Indices: 95245345--95245458 Score: 79
Period size: 28 Copynumber: 3.9 Consensus size: 27
95245335 CTATTCAGAA
*
95245345 ATCAGTGTTAA-CTGGGCCTTAGCCCAT
1 ATCAGTATTAATCTGGGCC-TAGCCCAT
95245372 ATCAGTATTAATCTGGGCCATAGCCC-T
1 ATCAGTATTAATCTGGGCC-TAGCCCAT
* *
95245399 ATTACAATATCAGAGCATACTGGGCCTAGCCCAT
1 A-T-CAGTAT--TA--AT-CTGGGCCTAGCCCAT
* *
95245433 ATCAGTATCAGTCTGGGCCGTAGCCC
1 ATCAGTATTAATCTGGGCC-TAGCCC
95245459 TATTACAAGT
Statistics
Matches: 70, Mismatches: 7, Indels: 19
0.73 0.07 0.20
Matches are distributed among these distances:
27 19 0.27
28 21 0.30
29 5 0.07
30 1 0.01
31 1 0.01
32 5 0.07
33 9 0.13
34 9 0.13
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (27 bp):
ATCAGTATTAATCTGGGCCTAGCCCAT
Found at i:95245530 original size:19 final size:20
Alignment explanation
Indices: 95245487--95245542 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 20
95245477 ATTGGGTCTT
*
95245487 GCCCATATTAACATAGTTGG
1 GCCCATATTAACACAGTTGG
* *
95245507 GCCCATTTTAATACAGTT-G
1 GCCCATATTAACACAGTTGG
* *
95245526 GCCCATAATAAAACAGT
1 GCCCATATTAACACAGT
95245543 CTCATATGAT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 15 0.50
20 15 0.50
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (20 bp):
GCCCATATTAACACAGTTGG
Found at i:95246866 original size:17 final size:19
Alignment explanation
Indices: 95246844--95246881 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
95246834 TGAGAGAAGG
*
95246844 ATAGAA-AA-GAATAAAAA
1 ATAGAAGAAGGAAAAAAAA
95246861 ATAGAAGAAGGAAAAAAAA
1 ATAGAAGAAGGAAAAAAAA
95246880 AT
1 AT
95246882 CCTAAAGGCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 2 0.11
19 10 0.56
ACGTcount: A:0.74, C:0.00, G:0.16, T:0.11
Consensus pattern (19 bp):
ATAGAAGAAGGAAAAAAAA
Found at i:95249092 original size:26 final size:26
Alignment explanation
Indices: 95249056--95249118 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
95249046 TATAACATTT
* *
95249056 TATTGTTTTATCTATTTTGTTTTCTG
1 TATTTTTTTATCTATTTTCTTTTCTG
* *
95249082 T-TTTTTGTTATTTTTTTTCTTTTCTG
1 TATTTTT-TTATCTATTTTCTTTTCTG
95249108 TATTTTTTTAT
1 TATTTTTTTAT
95249119 ATTTGGGTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
25 4 0.13
26 22 0.71
27 5 0.16
ACGTcount: A:0.10, C:0.06, G:0.08, T:0.76
Consensus pattern (26 bp):
TATTTTTTTATCTATTTTCTTTTCTG
Found at i:95250568 original size:26 final size:26
Alignment explanation
Indices: 95250539--95250620 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
95250529 TGATACAAAT
*
95250539 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
95250565 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
95250591 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
95250617 TGAT
1 TGAT
95250621 TGGAATTTCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:95257767 original size:20 final size:20
Alignment explanation
Indices: 95257742--95257780 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
95257732 TATTCTCTGG
*
95257742 AAAGTTTTAATTATGTAATC
1 AAAGTTTCAATTATGTAATC
95257762 AAAGTTTCAATTATGTAAT
1 AAAGTTTCAATTATGTAAT
95257781 GATGTAAGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.41, C:0.05, G:0.10, T:0.44
Consensus pattern (20 bp):
AAAGTTTCAATTATGTAATC
Found at i:95259765 original size:12 final size:12
Alignment explanation
Indices: 95259748--95259781 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
95259738 ACTATTATAA
95259748 TTAAATATAGTG
1 TTAAATATAGTG
95259760 TTAAATATAGTG
1 TTAAATATAGTG
95259772 TTAAAATATA
1 TT-AAATATA
95259782 TATAATATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 14 0.67
13 7 0.33
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.41
Consensus pattern (12 bp):
TTAAATATAGTG
Found at i:95260118 original size:48 final size:48
Alignment explanation
Indices: 95260066--95260162 Score: 176
Period size: 48 Copynumber: 2.0 Consensus size: 48
95260056 AATTTTAAGA
95260066 TATTCTTATTTCAAAGTGTGAATTTTAACAGTGATTTTAGTTATTCAT
1 TATTCTTATTTCAAAGTGTGAATTTTAACAGTGATTTTAGTTATTCAT
**
95260114 TATTCTTATTTCAAAGTGTGAATTTTAATTGTGATTTTAGTTATTCAT
1 TATTCTTATTTCAAAGTGTGAATTTTAACAGTGATTTTAGTTATTCAT
95260162 T
1 T
95260163 TTGGCATGGC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.28, C:0.07, G:0.12, T:0.53
Consensus pattern (48 bp):
TATTCTTATTTCAAAGTGTGAATTTTAACAGTGATTTTAGTTATTCAT
Found at i:95264556 original size:24 final size:24
Alignment explanation
Indices: 95264528--95264579 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
95264518 TTAGCAAGTC
* *
95264528 AAATAAACTATGCTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
95264552 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
95264576 AAAT
1 AAAT
95264580 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.10, G:0.04, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:95266524 original size:24 final size:24
Alignment explanation
Indices: 95266496--95266547 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
95266486 TTAGCAAGTC
** *
95266496 AAATAAACTATGCTAATAAATGCT
1 AAATAAACTACACTAATAAATACT
* *
95266520 AAATATATTACACTAATAAATACT
1 AAATAAACTACACTAATAAATACT
95266544 AAAT
1 AAAT
95266548 CTTCTAGAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.54, C:0.12, G:0.04, T:0.31
Consensus pattern (24 bp):
AAATAAACTACACTAATAAATACT
Found at i:95268851 original size:26 final size:26
Alignment explanation
Indices: 95268801--95268856 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
95268791 ATAGAAAGTG
* *
95268801 ACTTTACTCGTTCCGTAATTGACCAA
1 ACTTTACTCGTTCCGTAAGTAACCAA
* * *
95268827 ACTTTACTTGTTCTGTAAGTAACCAT
1 ACTTTACTCGTTCCGTAAGTAACCAA
95268853 ACTT
1 ACTT
95268857 AATTCACAAG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.23, G:0.11, T:0.39
Consensus pattern (26 bp):
ACTTTACTCGTTCCGTAAGTAACCAA
Found at i:95270021 original size:5 final size:5
Alignment explanation
Indices: 95270006--95270038 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
95269996 TCAAATTTGA
95270006 GTTTT -TTTT GTTTT GTTTT GTTTT GTTTT GTTT
1 GTTTT GTTTT GTTTT GTTTT GTTTT GTTTT GTTT
95270039 CTTTATATTC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.00, C:0.00, G:0.18, T:0.82
Consensus pattern (5 bp):
GTTTT
Found at i:95271144 original size:192 final size:192
Alignment explanation
Indices: 95270817--95271207 Score: 746
Period size: 192 Copynumber: 2.0 Consensus size: 192
95270807 TAATTTATGT
*
95270817 TTTTTAGACAAATGGGCTAATTGCTCATTAGCTCCCAAAACTCTCCAAAATCCTTTCCAAATTCT
1 TTTTTAGACAAATGGGCTAATTGCCCATTAGCTCCCAAAACTCTCCAAAATCCTTTCCAAATTCT
95270882 ACTAAAATTCCCTATATGTTATTTTATCAAATTAAAACCCTAACTCTCTTCCTATTTATACCTTA
66 ACTAAAATTCCCTATATGTTATTTTATCAAATTAAAACCCTAACTCTCTTCCTATTTATACCTTA
95270947 GATTTCTCTCAAAATTCTCTATTTCAAAACTCTTTTAAACCCTTAAGTTTTGCTAAAAGATA
131 GATTTCTCTCAAAATTCTCTATTTCAAAACTCTTTTAAACCCTTAAGTTTTGCTAAAAGATA
*
95271009 TTTTTAGACAAATGGGCTAATTGCCCATTAGCTCCTAAAACTCTCCAAAATCCTTTCCAAATTCT
1 TTTTTAGACAAATGGGCTAATTGCCCATTAGCTCCCAAAACTCTCCAAAATCCTTTCCAAATTCT
*
95271074 ACTAAAATTCCCTATTTGTTATTTTATCAAATTAAAACCCTAACTCTCTTCCTATTTATACCTTA
66 ACTAAAATTCCCTATATGTTATTTTATCAAATTAAAACCCTAACTCTCTTCCTATTTATACCTTA
95271139 GATTTCTCTCAAAATTCTCTATTTCAAAACTCTTTTAAACCCTTAAGTTTTGCTAAAAGATA
131 GATTTCTCTCAAAATTCTCTATTTCAAAACTCTTTTAAACCCTTAAGTTTTGCTAAAAGATA
95271201 TTCTTTA
1 TT-TTTA
95271208 AAGTCTTTGA
Statistics
Matches: 195, Mismatches: 3, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
192 191 0.98
193 4 0.02
ACGTcount: A:0.32, C:0.23, G:0.06, T:0.39
Consensus pattern (192 bp):
TTTTTAGACAAATGGGCTAATTGCCCATTAGCTCCCAAAACTCTCCAAAATCCTTTCCAAATTCT
ACTAAAATTCCCTATATGTTATTTTATCAAATTAAAACCCTAACTCTCTTCCTATTTATACCTTA
GATTTCTCTCAAAATTCTCTATTTCAAAACTCTTTTAAACCCTTAAGTTTTGCTAAAAGATA
Found at i:95272987 original size:32 final size:32
Alignment explanation
Indices: 95272941--95273003 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
95272931 CACTCCACCC
*
95272941 GTACCAGCCCTACACTCCATGTGGGGAATAGT
1 GTACCAGCCATACACTCCATGTGGGGAATAGT
95272973 GTACCAGCCATACACTCCATGTGGGGAATAG
1 GTACCAGCCATACACTCCATGTGGGGAATAG
95273004 CTCAACCCAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.27, C:0.27, G:0.25, T:0.21
Consensus pattern (32 bp):
GTACCAGCCATACACTCCATGTGGGGAATAGT
Found at i:95273213 original size:26 final size:26
Alignment explanation
Indices: 95273184--95273236 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
95273174 TCAAACATGC
95273184 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
95273210 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
95273236 A
1 A
95273237 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:95273703 original size:38 final size:38
Alignment explanation
Indices: 95273661--95273737 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
95273651 TCTAACTATT
95273661 CAAATACAAACTACGTATTAACCCCTTACAATATTCGG
1 CAAATACAAACTACGTATTAACCCCTTACAATATTCGG
*
95273699 CAAATACAAACTACGTGTTAACCCCTTACAATATTCGG
1 CAAATACAAACTACGTATTAACCCCTTACAATATTCGG
95273737 C
1 C
95273738 CAACCACACC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.38, C:0.27, G:0.09, T:0.26
Consensus pattern (38 bp):
CAAATACAAACTACGTATTAACCCCTTACAATATTCGG
Found at i:95275199 original size:26 final size:26
Alignment explanation
Indices: 95275163--95275246 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
95275153 CATGAAATTC
95275163 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
95275189 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
95275215 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
95275241 TTATCA
1 TTATCA
95275247 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:95282191 original size:63 final size:63
Alignment explanation
Indices: 95282108--95282234 Score: 220
Period size: 63 Copynumber: 2.0 Consensus size: 63
95282098 ACGATTCACT
*
95282108 GTCTGAATTAAGTAAGAAATTATCAATAGGCTCAATGGTTAAGTGTTAGTGCT-TATTCCTAGA
1 GTCTAAATTAAGTAAGAAATTATCAATAGGCTCAATGGTTAAGTGTTAGTGCTCT-TTCCTAGA
*
95282171 GTCTAAATTAAGTAAGAAATTATCAATAGGCTCACTGGTTAAGTGTTAGTGCTCTTTCCTAGA
1 GTCTAAATTAAGTAAGAAATTATCAATAGGCTCAATGGTTAAGTGTTAGTGCTCTTTCCTAGA
95282234 G
1 G
95282235 ATCCTAGGTT
Statistics
Matches: 61, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
63 60 0.98
64 1 0.02
ACGTcount: A:0.32, C:0.13, G:0.20, T:0.35
Consensus pattern (63 bp):
GTCTAAATTAAGTAAGAAATTATCAATAGGCTCAATGGTTAAGTGTTAGTGCTCTTTCCTAGA
Found at i:95282505 original size:12 final size:11
Alignment explanation
Indices: 95282477--95282519 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 11
95282467 TTTCTCTCCA
95282477 TCTTCTTTTTC
1 TCTTCTTTTTC
*
95282488 TTTTCTTTTTGC
1 TCTTCTTTTT-C
95282500 TCTTCTTTTCTC
1 TCTTCTTTT-TC
95282512 TCATTCTT
1 TC-TTCTT
95282520 GCACCTATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 9 0.33
12 12 0.44
13 6 0.22
ACGTcount: A:0.02, C:0.26, G:0.02, T:0.70
Consensus pattern (11 bp):
TCTTCTTTTTC
Found at i:95283438 original size:38 final size:35
Alignment explanation
Indices: 95283352--95283445 Score: 116
Period size: 38 Copynumber: 2.6 Consensus size: 35
95283342 TTATCGCTCT
*
95283352 ACTAAGTACATGTTAAACATGTCTACTACTGTTGA
1 ACTAAGTACATGTTAAGCATGTCTACTACTGTTGA
* * *
95283387 ACTGAGTATATGTTTAGCATGTCTACTATTACTGTTGA
1 ACTAAGTACATGTTAAGCATGTCTAC---TACTGTTGA
*
95283425 ACTAAATACATGTTAAGCATG
1 ACTAAGTACATGTTAAGCATG
95283446 ACTATTGTTT
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
35 22 0.46
38 26 0.54
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36
Consensus pattern (35 bp):
ACTAAGTACATGTTAAGCATGTCTACTACTGTTGA
Found at i:95286489 original size:34 final size:34
Alignment explanation
Indices: 95286446--95286515 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
95286436 AATTATTAAT
95286446 TTATTGGGTTTGCTTCTTTAGGCAAGGAAGAACC
1 TTATTGGGTTTGCTTCTTTAGGCAAGGAAGAACC
95286480 TTATTGGGTTTGCTTCTTTAGGCAAGGAAGAACC
1 TTATTGGGTTTGCTTCTTTAGGCAAGGAAGAACC
95286514 TT
1 TT
95286516 TCTATGAAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.23, C:0.14, G:0.26, T:0.37
Consensus pattern (34 bp):
TTATTGGGTTTGCTTCTTTAGGCAAGGAAGAACC
Found at i:95288542 original size:92 final size:93
Alignment explanation
Indices: 95288407--95288591 Score: 327
Period size: 92 Copynumber: 2.0 Consensus size: 93
95288397 AGCAATACTT
* *
95288407 TTCTTAGCCTTTATTTACTTTTGTTAGGATTGAGCTCTGATTAGAGATTTTGTTTTGGGTTTAAT
1 TTCTTAGCCTTTATTTACTTTTATTAGGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAAT
95288472 TGTTGATTCATCTTTTTTCTATTATTTC
66 TGTTGATTCATCTTTTTTCTATTATTTC
*
95288500 TTCTTCGCCTTTATTTAC-TTTATTAGGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAAT
1 TTCTTAGCCTTTATTTACTTTTATTAGGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAAT
*
95288564 TGTTTATTCATCTTTTTTCTATTATTTC
66 TGTTGATTCATCTTTTTTCTATTATTTC
95288592 ATGGCAGCTC
Statistics
Matches: 88, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 71 0.81
93 17 0.19
ACGTcount: A:0.18, C:0.11, G:0.15, T:0.56
Consensus pattern (93 bp):
TTCTTAGCCTTTATTTACTTTTATTAGGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAAT
TGTTGATTCATCTTTTTTCTATTATTTC
Found at i:95289063 original size:25 final size:25
Alignment explanation
Indices: 95289029--95289078 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
95289019 AAGGTTAATG
95289029 CTATTTGTCAATTCCCATTCAACAT
1 CTATTTGTCAATTCCCATTCAACAT
95289054 CTATTTGTCAATTCCCATTCAACAT
1 CTATTTGTCAATTCCCATTCAACAT
95289079 TCTCACTCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.04, T:0.40
Consensus pattern (25 bp):
CTATTTGTCAATTCCCATTCAACAT
Found at i:95290363 original size:20 final size:20
Alignment explanation
Indices: 95290326--95290363 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
95290316 TGATGGGGAG
*
95290326 CAAGAATATCAAGTTGGATT
1 CAAGAATATCAAGCTGGATT
95290346 CAAGAA-ATCGAAGCTGGA
1 CAAGAATATC-AAGCTGGA
95290364 GGAGAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (20 bp):
CAAGAATATCAAGCTGGATT
Found at i:95292315 original size:46 final size:46
Alignment explanation
Indices: 95292263--95292487 Score: 317
Period size: 46 Copynumber: 4.9 Consensus size: 46
95292253 GTGCTCTCTG
*
95292263 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCCTA
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTA
95292309 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTA
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTA
* * *
95292355 ATATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACGTG
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTA
*** * *
95292401 ATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACATG
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTA
* * * *
95292447 ATA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 ATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
95292488 TCATGTCAAA
Statistics
Matches: 164, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.01
46 163 0.99
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTA
Found at i:95293618 original size:14 final size:14
Alignment explanation
Indices: 95293599--95293636 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
95293589 CCAGAAAAGT
95293599 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
95293613 AAATCATTTTCCGG
1 AAATCATTTTCCAG
*
95293627 AAAACATTTT
1 AAATCATTTT
95293637 ACTGGCAAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.37, C:0.18, G:0.08, T:0.37
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:95294765 original size:5 final size:5
Alignment explanation
Indices: 95294755--95294780 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
95294745 ACATTATTTG
95294755 ACCTC ACCTC ACCTC ACCTC ACCTC A
1 ACCTC ACCTC ACCTC ACCTC ACCTC A
95294781 ACTTTCTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.58, G:0.00, T:0.19
Consensus pattern (5 bp):
ACCTC
Found at i:95295982 original size:19 final size:19
Alignment explanation
Indices: 95295935--95295982 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 19
95295925 CCACGCCAAC
*
95295935 AATTAATTAAATTTTTTAAA
1 AATT-ATTAAATTTTTAAAA
*
95295955 ATTTA-TAAATTTTTAAAA
1 AATTATTAAATTTTTAAAA
95295973 AATTATTAAA
1 AATTATTAAA
95295983 ATTATGTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
18 16 0.67
19 5 0.21
20 3 0.12
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
AATTATTAAATTTTTAAAA
Found at i:95306976 original size:2 final size:2
Alignment explanation
Indices: 95306971--95307006 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
95306961 ACAGACACAC
95306971 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
95307007 GGGGAGGGTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:95318455 original size:26 final size:26
Alignment explanation
Indices: 95318424--95318517 Score: 67
Period size: 26 Copynumber: 3.7 Consensus size: 26
95318414 ATAAGATTAT
95318424 TATTAAATATAATTTAACAATAAATAA
1 TATTAAATATAATTTAA-AATAAATAA
* *
95318451 T-TT-AATCATATTTTAATAT-AATAA
1 TATTAAAT-ATAATTTAAAATAAATAA
*
95318475 TGATTAAATATAAATTAATAA-AAATAA
1 T-ATTAAATATAATTTAA-AATAAATAA
*
95318502 GA-T--ATATAATTTAAAA
1 TATTAAATATAATTTAAAA
95318518 ACATTCTTAC
Statistics
Matches: 54, Mismatches: 7, Indels: 17
0.69 0.09 0.22
Matches are distributed among these distances:
22 2 0.04
23 10 0.19
24 6 0.11
25 6 0.11
26 20 0.37
27 10 0.19
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.39
Consensus pattern (26 bp):
TATTAAATATAATTTAAAATAAATAA
Found at i:95320467 original size:41 final size:41
Alignment explanation
Indices: 95320407--95320648 Score: 286
Period size: 41 Copynumber: 5.9 Consensus size: 41
95320397 CCTTGAGTCC
* * *
95320407 AGCAGGCTTTATGCTGGTGTATTTTATCAGGCTTTGTGCCT
1 AGCAGGCTTTGTGCCGGTGTATATTATCAGGCTTTGTGCCT
* *
95320448 GGCAGGCTTTGTGCCGGTGTATATTATCAGGCTTTGTGTCT
1 AGCAGGCTTTGTGCCGGTGTATATTATCAGGCTTTGTGCCT
* * * * * **
95320489 AGCAAGCTTCGTGCTGATGTAAATTATCACACTTTGTGCCT
1 AGCAGGCTTTGTGCCGGTGTATATTATCAGGCTTTGTGCCT
* *
95320530 AGCAGGCTTTGTGCCGGTGTATATTACCAGGCTTTGTGTCT
1 AGCAGGCTTTGTGCCGGTGTATATTATCAGGCTTTGTGCCT
* *** * *
95320571 AGCAAGCTTTGTGCTAATGTATATTATCAGGCTTTGTACCA
1 AGCAGGCTTTGTGCCGGTGTATATTATCAGGCTTTGTGCCT
* *
95320612 AGCAGGCTTCGTGCCGGTGTATATTATTAGGCTTTGT
1 AGCAGGCTTTGTGCCGGTGTATATTATCAGGCTTTGT
95320649 TGTTGGTGTA
Statistics
Matches: 164, Mismatches: 37, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
41 164 1.00
ACGTcount: A:0.18, C:0.18, G:0.26, T:0.38
Consensus pattern (41 bp):
AGCAGGCTTTGTGCCGGTGTATATTATCAGGCTTTGTGCCT
Found at i:95320555 original size:82 final size:82
Alignment explanation
Indices: 95320438--95320648 Score: 323
Period size: 82 Copynumber: 2.6 Consensus size: 82
95320428 TTTTATCAGG
*
95320438 CTTTGTGCCTGGCAGGCTTTGTGCCGGTGTATATTATCAGGCTTTGTGTCTAGCAAGCTTCGTGC
1 CTTTGTGCCTAGCAGGCTTTGTGCCGGTGTATATTATCAGGCTTTGTGTCTAGCAAGCTTCGTGC
*
95320503 TGATGTAAATTATCACA
66 TAATGTAAATTATCACA
* *
95320520 CTTTGTGCCTAGCAGGCTTTGTGCCGGTGTATATTACCAGGCTTTGTGTCTAGCAAGCTTTGTGC
1 CTTTGTGCCTAGCAGGCTTTGTGCCGGTGTATATTATCAGGCTTTGTGTCTAGCAAGCTTCGTGC
* **
95320585 TAATGTATATTATCAGG
66 TAATGTAAATTATCACA
* * * *
95320602 CTTTGTACCAAGCAGGCTTCGTGCCGGTGTATATTATTAGGCTTTGT
1 CTTTGTGCCTAGCAGGCTTTGTGCCGGTGTATATTATCAGGCTTTGT
95320649 TGTTGGTGTA
Statistics
Matches: 117, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
82 117 1.00
ACGTcount: A:0.18, C:0.19, G:0.26, T:0.37
Consensus pattern (82 bp):
CTTTGTGCCTAGCAGGCTTTGTGCCGGTGTATATTATCAGGCTTTGTGTCTAGCAAGCTTCGTGC
TAATGTAAATTATCACA
Found at i:95320714 original size:67 final size:67
Alignment explanation
Indices: 95320588--95320715 Score: 184
Period size: 67 Copynumber: 1.9 Consensus size: 67
95320578 TTTGTGCTAA
* * * **
95320588 TGTATATTATCAGGCTTTGTACCAAGCAGGCTTCGTGCCGGTGTATATTATTAGGCTTTGTTGTT
1 TGTATATTATCAGGCTTTCTACCAAGCAGGATTCGTGCCGGTGTATATTATCAAACTTTGTTGTT
95320653 GG
66 GG
* * *
95320655 TGTATATTATCAGGCTTTCTGCCTAGCAGGATTTGTGCCGGTGTATATTATCAAACTTTGT
1 TGTATATTATCAGGCTTTCTACCAAGCAGGATTCGTGCCGGTGTATATTATCAAACTTTGT
95320716 GCCTAACAGG
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
67 53 1.00
ACGTcount: A:0.20, C:0.16, G:0.24, T:0.41
Consensus pattern (67 bp):
TGTATATTATCAGGCTTTCTACCAAGCAGGATTCGTGCCGGTGTATATTATCAAACTTTGTTGTT
GG
Found at i:95323806 original size:57 final size:57
Alignment explanation
Indices: 95323733--95323853 Score: 145
Period size: 57 Copynumber: 2.1 Consensus size: 57
95323723 AATCATTTAT
* * *
95323733 CATTTCCATTTCCATTTTGGAGAAAACCACATTCGTTTCCAAATGATTT-TATTTCTC
1 CATTTCCATTTCCATTTTCGAGAAAACCACAATCATTTCCAAATG-TTTCTATTTCTC
* * ** *
95323790 CATTTTCATTTTCATTTTCGAGAAAACCTTAATCATTTCCAAATGTTTCCTTTTTCTC
1 CATTTCCATTTCCATTTTCGAGAAAACCACAATCATTTCCAAATGTTT-CTATTTCTC
95323848 CATTTC
1 CATTTC
95323854 GCCATTTCTA
Statistics
Matches: 53, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
56 3 0.06
57 38 0.72
58 12 0.23
ACGTcount: A:0.25, C:0.23, G:0.07, T:0.45
Consensus pattern (57 bp):
CATTTCCATTTCCATTTTCGAGAAAACCACAATCATTTCCAAATGTTTCTATTTCTC
Found at i:95325638 original size:46 final size:46
Alignment explanation
Indices: 95325495--95325638 Score: 134
Period size: 46 Copynumber: 3.1 Consensus size: 46
95325485 CCCGCCCATA
* * *
95325495 AGTGAACTCGGACTCAACTCAACGAGCTCGAATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TACATC-CT
* * * * *
95325544 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCATACATCCT
*
95325588 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
95325634 AGTGA
1 AGTGA
95325639 CATGTCACTT
Statistics
Matches: 75, Mismatches: 14, Indels: 15
0.72 0.13 0.14
Matches are distributed among these distances:
44 8 0.11
46 33 0.44
47 30 0.40
49 4 0.05
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
Found at i:95330088 original size:47 final size:48
Alignment explanation
Indices: 95330013--95330183 Score: 151
Period size: 47 Copynumber: 3.7 Consensus size: 48
95330003 TGGGTAAGGT
* *
95330013 GCCGATGCCATGTCCCAGACACGGTCTTACACTGGCTCAT-ATCTC-AA
1 GCCGAAGCCATGTCCCAGACATGGTCTTACACTGGCT-ATCATCTCGAA
* * * *
95330060 GTCGAAGCCATGTCCCGGACATGGTCTTACACTGACTATCATCTCGTA
1 GCCGAAGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCTCGAA
* * * *
95330108 GCCGACG-CATGCCCCAGACAT-GTCTTACACTGGCT-T-ATGTCCTAA
1 GCCGAAGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCT-CGAA
* *
95330153 GGCCGATG-CATGCCCCAGACAT-GTCTTACAC
1 -GCCGAAGCCATGTCCCAGACATGGTCTTACAC
95330184 AAGCACTTGT
Statistics
Matches: 105, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
44 3 0.03
45 3 0.03
46 44 0.42
47 49 0.47
48 6 0.06
ACGTcount: A:0.23, C:0.33, G:0.20, T:0.24
Consensus pattern (48 bp):
GCCGAAGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCTCGAA
Found at i:95333736 original size:54 final size:54
Alignment explanation
Indices: 95333654--95333762 Score: 182
Period size: 54 Copynumber: 2.0 Consensus size: 54
95333644 AAATTGCTAT
* *
95333654 TTAAGATCTCCTAATTAATATTTCAAAGCAATTTTATACTAGAAACTTATAGAA
1 TTAAGACCTCCTAATTAATATTTCAAAGCAATTTCATACTAGAAACTTATAGAA
* *
95333708 TTAAGACCTCGTAATTAATATTTCAAAGCAATTTCATACTAGAAACTTCTAGAA
1 TTAAGACCTCCTAATTAATATTTCAAAGCAATTTCATACTAGAAACTTATAGAA
95333762 T
1 T
95333763 GCAAATTTTG
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.41, C:0.15, G:0.08, T:0.36
Consensus pattern (54 bp):
TTAAGACCTCCTAATTAATATTTCAAAGCAATTTCATACTAGAAACTTATAGAA
Found at i:95338736 original size:14 final size:14
Alignment explanation
Indices: 95338717--95338748 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
95338707 AATGAGCTCA
95338717 ATACATAACCAAAT
1 ATACATAACCAAAT
95338731 ATACATAACCAAAT
1 ATACATAACCAAAT
95338745 ATAC
1 ATAC
95338749 GCCATATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.56, C:0.22, G:0.00, T:0.22
Consensus pattern (14 bp):
ATACATAACCAAAT
Found at i:95339777 original size:43 final size:43
Alignment explanation
Indices: 95339716--95339907 Score: 258
Period size: 43 Copynumber: 4.5 Consensus size: 43
95339706 ACGAACTCAT
* * * * * * *
95339716 ACACTTAGTGCCAATTAATGAGCTGAAGTTAGAATTGTATCGC
1 ACACTTAGCGCCAATTAATTAGCCGAGGCTATAAATGTATCGC
* *
95339759 ACACTTAGCGCCAATTAATTAGCCGAGGCTATAAATGTATTGT
1 ACACTTAGCGCCAATTAATTAGCCGAGGCTATAAATGTATCGC
* * *
95339802 ACACTTAGCGCCAATTAATTAGCTGAGGCTATAAATGTATTGT
1 ACACTTAGCGCCAATTAATTAGCCGAGGCTATAAATGTATCGC
*
95339845 ACACTTAGCGCCAATTAATTAGCCGAGGCTATAATTGTATCGC
1 ACACTTAGCGCCAATTAATTAGCCGAGGCTATAAATGTATCGC
*
95339888 ACACTTAGTGCCAATTAATT
1 ACACTTAGCGCCAATTAATT
95339908 CAAACGAACT
Statistics
Matches: 134, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 134 1.00
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (43 bp):
ACACTTAGCGCCAATTAATTAGCCGAGGCTATAAATGTATCGC
Found at i:95339826 original size:86 final size:86
Alignment explanation
Indices: 95339715--95339907 Score: 287
Period size: 86 Copynumber: 2.2 Consensus size: 86
95339705 AACGAACTCA
* * *
95339715 TACACTTAGTGCCAATTAATGAGCTGAAGTTAGAATTGTATCGCACACTTAGCGCCAATTAATTA
1 TACACTTAGTGCCAATTAATTAGCTGAAGCTAGAAATGTATCGCACACTTAGCGCCAATTAATTA
*
95339780 GCCGAGGCTATAAATGTATTG
66 GCCGAGGCTATAAATGTATCG
* * * * *
95339801 TACACTTAGCGCCAATTAATTAGCTGAGGCTATAAATGTATTGTACACTTAGCGCCAATTAATTA
1 TACACTTAGTGCCAATTAATTAGCTGAAGCTAGAAATGTATCGCACACTTAGCGCCAATTAATTA
*
95339866 GCCGAGGCTATAATTGTATCG
66 GCCGAGGCTATAAATGTATCG
*
95339887 CACACTTAGTGCCAATTAATT
1 TACACTTAGTGCCAATTAATT
95339908 CAAACGAACT
Statistics
Matches: 95, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
86 95 1.00
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (86 bp):
TACACTTAGTGCCAATTAATTAGCTGAAGCTAGAAATGTATCGCACACTTAGCGCCAATTAATTA
GCCGAGGCTATAAATGTATCG
Found at i:95346994 original size:17 final size:18
Alignment explanation
Indices: 95346962--95346995 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
95346952 ACTAGGAAAT
*
95346962 AAAAATAAACACCTAAAA
1 AAAAATAAACAACTAAAA
95346980 AAAAATAAA-AACTAAA
1 AAAAATAAACAACTAAA
95346996 GATAAGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (18 bp):
AAAAATAAACAACTAAAA
Found at i:95347805 original size:19 final size:19
Alignment explanation
Indices: 95347783--95347819 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
95347773 TAAAACTAAC
95347783 ATTAAAATAAAAAATAAAT
1 ATTAAAATAAAAAATAAAT
* *
95347802 ATTAAAATTAAAATTAAA
1 ATTAAAATAAAAAATAAA
95347820 GAAAATATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (19 bp):
ATTAAAATAAAAAATAAAT
Found at i:95347811 original size:6 final size:6
Alignment explanation
Indices: 95347761--95347819 Score: 52
Period size: 6 Copynumber: 10.2 Consensus size: 6
95347751 TGATCCCCTT
* * * *
95347761 AATTAA AA-T-A AA-TAA AACTAA CATTAA AATAAA AAATAA ATATTAA
1 AATTAA AATTAA AATTAA AATTAA AATTAA AATTAA AATTAA A-ATTAA
95347807 AATTAA AATTAA A
1 AATTAA AATTAA A
95347820 GAAAATATAA
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
4 4 0.09
5 4 0.09
6 30 0.70
7 5 0.12
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.27
Consensus pattern (6 bp):
AATTAA
Found at i:95347857 original size:19 final size:20
Alignment explanation
Indices: 95347821--95347858 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
95347811 AAAATTAAAG
*
95347821 AAAATATAAAAATGAGAAAT
1 AAAATATAAAAATAAGAAAT
*
95347841 AAAA-ATAAAACTAAGAAA
1 AAAATATAAAAATAAGAAA
95347859 AGCTTAAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.74, C:0.03, G:0.08, T:0.16
Consensus pattern (20 bp):
AAAATATAAAAATAAGAAAT
Found at i:95366904 original size:16 final size:17
Alignment explanation
Indices: 95366883--95366918 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
95366873 GTAACGCTCT
*
95366883 AAAAATCTCAAAA-CCC
1 AAAAATCCCAAAATCCC
95366899 AAAAATCCCAAAATCCC
1 AAAAATCCCAAAATCCC
95366916 AAA
1 AAA
95366919 CTTTCTTTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.58, C:0.31, G:0.00, T:0.11
Consensus pattern (17 bp):
AAAAATCCCAAAATCCC
Found at i:95368469 original size:29 final size:29
Alignment explanation
Indices: 95368433--95368530 Score: 110
Period size: 29 Copynumber: 3.4 Consensus size: 29
95368423 TGAATGTGAC
* *
95368433 TGGGCCTAACGGGCTATATAAATGCGATT
1 TGGGCCTAATGGGCCATATAAATGCGATT
**
95368462 TGGGCCTAATGGGCCATATACAA-GTTATT
1 TGGGCCTAATGGGCCATATA-AATGCGATT
**
95368491 TGGGCCTAATGGGCCATATAAATATGA-T
1 TGGGCCTAATGGGCCATATAAATGCGATT
*
95368519 TGGGCTTAATGG
1 TGGGCCTAATGG
95368531 ACCAGATACA
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
28 14 0.23
29 44 0.73
30 2 0.03
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAATGCGATT
Found at i:95372314 original size:20 final size:19
Alignment explanation
Indices: 95372291--95372329 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
95372281 ATGGGCCTCA
95372291 TTGGCCCGAGATGGGC-CATG
1 TTGGCCC-A-ATGGGCTCATG
95372311 TTGGCCCAATGGGCTCATG
1 TTGGCCCAATGGGCTCATG
95372330 GGGCCCACAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 5 0.28
20 7 0.39
ACGTcount: A:0.15, C:0.26, G:0.36, T:0.23
Consensus pattern (19 bp):
TTGGCCCAATGGGCTCATG
Found at i:95372831 original size:27 final size:27
Alignment explanation
Indices: 95372764--95372862 Score: 93
Period size: 27 Copynumber: 3.8 Consensus size: 27
95372754 TCGGAGGAAG
*
95372764 TACTG-TAATAGTGGCTTTGCCACGTTT
1 TACTGATATTAGTGGCTTTGCCACG-TT
*
95372791 TACT-AT-TCTGGTGGCTTTGCCACGTAT
1 TACTGATAT-TAGTGGCTTTGCCACGT-T
95372818 T-CTGATATTAGTGGC--TGCCACGTT
1 TACTGATATTAGTGGCTTTGCCACGTT
* *
95372842 TACTGTTATTAGTAGCTTTGC
1 TACTGATATTAGTGGCTTTGC
95372863 TGTGTTACTG
Statistics
Matches: 59, Mismatches: 5, Indels: 16
0.74 0.06 0.20
Matches are distributed among these distances:
24 2 0.03
25 20 0.34
26 3 0.05
27 33 0.56
28 1 0.02
ACGTcount: A:0.17, C:0.19, G:0.22, T:0.41
Consensus pattern (27 bp):
TACTGATATTAGTGGCTTTGCCACGTT
Found at i:95375666 original size:51 final size:51
Alignment explanation
Indices: 95375599--95375699 Score: 202
Period size: 51 Copynumber: 2.0 Consensus size: 51
95375589 CTAGCTTATG
95375599 TTAAAGGTACTTCTGTGGGAGATGTCAGAACTGTTAAGGAGTTTTCTGATT
1 TTAAAGGTACTTCTGTGGGAGATGTCAGAACTGTTAAGGAGTTTTCTGATT
95375650 TTAAAGGTACTTCTGTGGGAGATGTCAGAACTGTTAAGGAGTTTTCTGAT
1 TTAAAGGTACTTCTGTGGGAGATGTCAGAACTGTTAAGGAGTTTTCTGAT
95375700 GTTGATTGCG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.26, C:0.10, G:0.28, T:0.37
Consensus pattern (51 bp):
TTAAAGGTACTTCTGTGGGAGATGTCAGAACTGTTAAGGAGTTTTCTGATT
Done.