Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 31 of 313
Found at i:10656741 original size:11 final size:11
Alignment explanation
Indices: 10656725--10656750 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
10656715 AACTAAAATG
10656725 AAATAAATTCA
1 AAATAAATTCA
10656736 AAATAAATTCA
1 AAATAAATTCA
10656747 AAAT
1 AAAT
10656751 GAGCAAACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.65, C:0.08, G:0.00, T:0.27
Consensus pattern (11 bp):
AAATAAATTCA
Found at i:10661091 original size:11 final size:11
Alignment explanation
Indices: 10661075--10661100 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
10661065 AACTAAAATG
10661075 AAATAAATTCA
1 AAATAAATTCA
10661086 AAATAAATTCA
1 AAATAAATTCA
10661097 AAAT
1 AAAT
10661101 GAGCAAACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.65, C:0.08, G:0.00, T:0.27
Consensus pattern (11 bp):
AAATAAATTCA
Found at i:10669155 original size:44 final size:44
Alignment explanation
Indices: 10669092--10669180 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
10669082 AAGAAGCTAC
10669092 TTTGGAAAAGGAAAGTTTAAAGAAAGAACAATACACTGAAATTT
1 TTTGGAAAAGGAAAGTTTAAAGAAAGAACAATACACTGAAATTT
*
10669136 TTTGGAAAATGAAAGTTTAAAGAAAGAACAATACACTGAAATTT
1 TTTGGAAAAGGAAAGTTTAAAGAAAGAACAATACACTGAAATTT
10669180 T
1 T
10669181 CACAAGTATA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.49, C:0.07, G:0.17, T:0.27
Consensus pattern (44 bp):
TTTGGAAAAGGAAAGTTTAAAGAAAGAACAATACACTGAAATTT
Found at i:10670464 original size:65 final size:63
Alignment explanation
Indices: 10670342--10670489 Score: 197
Period size: 65 Copynumber: 2.3 Consensus size: 63
10670332 ACGGGCACCA
* * * *
10670342 GACATGCCCGTGTGCCAGGTTGTGTGAAATTTAGGGAGGTTACTGACTTGTACCACACGGCCAAG
1 GACACGCCCATGTGCCAGGCTGTGTGAAATTTAGGGAGGTTACTGACTTGGACCACACGGCC--G
**
10670407 GACACGCCCATGTGCCAGGCTGTGTGAAATTTAGGGAGGTTACTGACTTGGGTCACACGGCCG
1 GACACGCCCATGTGCCAGGCTGTGTGAAATTTAGGGAGGTTACTGACTTGGACCACACGGCCG
*
10670470 GCCACACGCCTATGTGCCAG
1 G--ACACGCCCATGTGCCAG
10670490 CCCGTGTGCC
Statistics
Matches: 74, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
63 2 0.03
65 72 0.97
ACGTcount: A:0.22, C:0.25, G:0.31, T:0.22
Consensus pattern (63 bp):
GACACGCCCATGTGCCAGGCTGTGTGAAATTTAGGGAGGTTACTGACTTGGACCACACGGCCG
Found at i:10672504 original size:28 final size:27
Alignment explanation
Indices: 10672419--10672508 Score: 76
Period size: 27 Copynumber: 3.2 Consensus size: 27
10672409 GTGACAGAGT
* *
10672419 CACCAGATACAGATATTTTATGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
* * *
10672448 CACTAGAACAGATACA--CGTGGCAGGGC
1 CACCAGAACAGATA-ATTTGTGGCA-TGC
10672475 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
10672503 CACCAG
1 CACCAG
10672509 GACGCTTCCT
Statistics
Matches: 49, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
26 1 0.02
27 21 0.43
28 21 0.43
29 6 0.12
ACGTcount: A:0.33, C:0.24, G:0.23, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:10672742 original size:28 final size:28
Alignment explanation
Indices: 10672614--10672734 Score: 197
Period size: 28 Copynumber: 4.3 Consensus size: 28
10672604 AAATTAACCC
* * **
10672614 TAGGGGTATAAAGGTCATTTTGCACGCA
1 TAGGGGTATAATGGTAATTTTGCATACA
10672642 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
*
10672670 TAGGGGTATAATGGTAATTTTACATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
10672698 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
10672726 TAGGGGTAT
1 TAGGGGTAT
10672735 TCTAGTAAAT
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 87 1.00
ACGTcount: A:0.31, C:0.08, G:0.26, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:10673821 original size:12 final size:13
Alignment explanation
Indices: 10673802--10673834 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
10673792 GGGTTCGGCT
10673802 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
10673815 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
10673827 ATGGAGAA
1 ATGGAGAA
10673835 AAAGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:10677540 original size:159 final size:159
Alignment explanation
Indices: 10677251--10677568 Score: 600
Period size: 159 Copynumber: 2.0 Consensus size: 159
10677241 CTGTTCCCAT
* *
10677251 GAACTACTGAACTCGAGGATGCAACATCTCAACATATCCTCAAGTATCTGAATTATCCGTTCGGA
1 GAACTACTGAACTCGAGGATGCAACATCTCAACATATCCTCAAGTATCTGAATTATCCGCTCAGA
*
10677316 TTGACCATCGGTTTGGGGGTGAAAAGCAGTGCTAAAATGCAGCTTGGTACCCAGAGCTTCTTGCA
66 TTGACCATCGGTTTGGGGGTGAAAAGCAGTGCTAAAATGCAGCTTGGTACCCAAAGCTTCTTGCA
10677381 ATTTCTTCCAAAATCGTGAGGTGAATCTC
131 ATTTCTTCCAAAATCGTGAGGTGAATCTC
10677410 GAACTACTGAACTCGAGGATGCAACATCTCAACATATCCTCAAGTATCTGAATTATCCGCTCAGA
1 GAACTACTGAACTCGAGGATGCAACATCTCAACATATCCTCAAGTATCTGAATTATCCGCTCAGA
*
10677475 TTGACCATCGGTTTGGGGGTGAAAAGTAGTGCTAAAATGCAGCTTGGTACCCAAAGCTTCTTGCA
66 TTGACCATCGGTTTGGGGGTGAAAAGCAGTGCTAAAATGCAGCTTGGTACCCAAAGCTTCTTGCA
10677540 ATTTCTTCCAAAATCGTGAGGTGAATCTC
131 ATTTCTTCCAAAATCGTGAGGTGAATCTC
10677569 AGATCTCTAT
Statistics
Matches: 155, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
159 155 1.00
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (159 bp):
GAACTACTGAACTCGAGGATGCAACATCTCAACATATCCTCAAGTATCTGAATTATCCGCTCAGA
TTGACCATCGGTTTGGGGGTGAAAAGCAGTGCTAAAATGCAGCTTGGTACCCAAAGCTTCTTGCA
ATTTCTTCCAAAATCGTGAGGTGAATCTC
Found at i:10683437 original size:39 final size:40
Alignment explanation
Indices: 10683392--10683559 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
10683382 CGGGGTTTAG
* * *
10683392 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
10683431 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
10683471 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
10683511 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
10683552 CCGGATAT
1 CCGGATAT
10683560 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:10683542 original size:41 final size:40
Alignment explanation
Indices: 10683415--10683559 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
10683405 CTCGCACAAG
* * * * *
10683415 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
10683455 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
10683495 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
10683536 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
10683560 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:10688834 original size:24 final size:24
Alignment explanation
Indices: 10688802--10688849 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
10688792 ATACAATTTG
10688802 ACATGTCACTGGAACTATATGAGT
1 ACATGTCACTGGAACTATATGAGT
10688826 ACATGTCACTGGAACTATATGAGT
1 ACATGTCACTGGAACTATATGAGT
10688850 TGAACTCATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (24 bp):
ACATGTCACTGGAACTATATGAGT
Found at i:10696297 original size:81 final size:82
Alignment explanation
Indices: 10696172--10696370 Score: 253
Period size: 81 Copynumber: 2.5 Consensus size: 82
10696162 CGATTCTTAA
* * *
10696172 CACTGGCTC-AAAGCCCTTCGAGACCAAGCTCGGATTAGGCCACTGGCTCGAAGGCCCTTCGGAA
1 CACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGATTAGGCCACTGGCTCAAAAGCCCTTCGGAA
10696236 CTAAGTCCGGTTATGA-
66 CTAAGTCCGGTTATGAG
* * * *
10696252 CATTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTA-G-CACTGGCTCAAAAGCCCTTCGT
1 CACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGG--ATTAGGCCACTGGCTCAAAAGCCCTTCGG
* * *
10696315 AATTAAGTTCGGTTATTAG
64 AACTAAGTCCGGTTATGAG
*
10696334 CACTGGCTCAAAAGCCCTTCGAACCCAAGCTCGGATT
1 CACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGATT
10696371 TACACCCCGA
Statistics
Matches: 101, Mismatches: 14, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
80 11 0.11
81 55 0.54
82 31 0.31
83 4 0.04
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (82 bp):
CACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGATTAGGCCACTGGCTCAAAAGCCCTTCGGAA
CTAAGTCCGGTTATGAG
Found at i:10696312 original size:41 final size:41
Alignment explanation
Indices: 10696172--10696356 Score: 225
Period size: 41 Copynumber: 4.6 Consensus size: 41
10696162 CGATTCTTAA
* * *
10696172 CACTGGCTC-AAAGCCCTTCGAGACCAAGCTCGG--ATTAGG
1 CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTA-G
* * * * *
10696211 CCACTGGCTCGAAGGCCCTTCGGAACTAAGTCCGGTTATGA-
1 -CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
*
10696252 CATTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
1 CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
* *
10696293 CACTGGCTCAAAAGCCCTTCGTAATTAAGTTCGGTTATTAG
1 CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
10696334 CACTGGCTCAAAAGCCCTTCGAA
1 CACTGGCTCAAAAGCCCTTCGAA
10696357 CCCAAGCTCG
Statistics
Matches: 124, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
40 43 0.35
41 78 0.63
43 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (41 bp):
CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
Found at i:10706815 original size:77 final size:77
Alignment explanation
Indices: 10706705--10706850 Score: 186
Period size: 77 Copynumber: 1.9 Consensus size: 77
10706695 AGGGGATATA
* * * * *
10706705 TTGAGTTGGCTTTGGGCCATGAAATTAGCACTTCGGGTATGAGTTATAC-TGATTTGGCTTCGAG
1 TTGAGTTGGCTTTGGGCAATGAAATCAGCACTTCGGATATAAGTTA-ACTTAATTTGGCTTCGAG
10706769 CCATGAATATAGG
65 CCATGAATATAGG
* * * * *
10706782 TTGATTTGGCTTTGGGCAATGATATCAGTACTTCGGATATAAGTTACCTTAATTTGGCTTCGGGC
1 TTGAGTTGGCTTTGGGCAATGAAATCAGCACTTCGGATATAAGTTAACTTAATTTGGCTTCGAGC
10706847 CATG
66 CATG
10706851 GTATAGTTAC
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
76 1 0.02
77 57 0.98
ACGTcount: A:0.23, C:0.15, G:0.27, T:0.36
Consensus pattern (77 bp):
TTGAGTTGGCTTTGGGCAATGAAATCAGCACTTCGGATATAAGTTAACTTAATTTGGCTTCGAGC
CATGAATATAGG
Found at i:10709411 original size:17 final size:16
Alignment explanation
Indices: 10709385--10709416 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
10709375 GGATTAGCCA
10709385 TTTTGCGAACTCTAGT
1 TTTTGCGAACTCTAGT
10709401 TTTTGGCGAACTCTAG
1 TTTT-GCGAACTCTAG
10709417 GTTTGGCAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.19, C:0.19, G:0.22, T:0.41
Consensus pattern (16 bp):
TTTTGCGAACTCTAGT
Found at i:10709421 original size:16 final size:17
Alignment explanation
Indices: 10709389--10709423 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
10709379 TAGCCATTTT
*
10709389 GCGAACTCTAGTTTTTG
1 GCGAACTCTAGTGTTTG
10709406 GCGAACTCTAG-GTTTG
1 GCGAACTCTAGTGTTTG
10709422 GC
1 GC
10709424 AGACTCTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.17, C:0.20, G:0.29, T:0.34
Consensus pattern (17 bp):
GCGAACTCTAGTGTTTG
Found at i:10709900 original size:782 final size:785
Alignment explanation
Indices: 10708394--10710959 Score: 3700
Period size: 786 Copynumber: 3.3 Consensus size: 785
10708384 TCTTACAGGT
* *
10708394 AATTTTAATGAACA-AA-AGATACACTCAACTTTTCACAAGTATAAATATTAAGGATGGAATTTT
1 AATTTTAATGAA-AGAACA-ATACACTCAACTTTTCACAAGTATAAATATCAAGGATGAAATTTT
* * * **
10708457 CTAAGTGGGGAAGAATTGTAACTGTCTGCCCGGCAGAGACCTAATATTCAGTTATT-TTCTGGTG
64 CTAAGTGGGGGAGAATTGTAACTGTCTGCCCGGCAGAGACCCAATATTAAGTTATTGTT-TGGCA
* * * *
10708521 TATAATTGGTAAAGTCAATGGTAAAATTGAGTAAGTAACA-TATTTGT-TTTGGCTACATAAAGC
128 TATAATTGGTAAAGTCAAGGGTAGAATTGAGTAAGTAA-AGTATTT-TATTTGGCTAAATAGAGC
* *
10708584 ACTTTGTGGGATTAGCCATTTTGCGAACTCCAATTTTTGGCGAGCTCTAGTGTTTGGCAGACTCT
191 ACTTTGTGGGATTAGCCATTTTGCGAACTCAAATTTTTGGCGAACTCTAG-GTTTGGCAGACTCT
* *
10708649 TTAGCAAAGTATCCACCCACCCCAATTGTTTTGAAAGAACTCGTTAAGTTCACATTTTGATTAGA
255 TTAGCAAAGTATCCACCCACCCCAAATGTTTTGAAAGAACTCGTTAAGTTCACAATTTGATTAGA
10708714 CTTGTTTTATATTTAGTGTTTGATGACTTAGAAAGTAATGTTTGGATTTAGTTAAGACTTAGTTA
320 CTTGTTTTATATTTAGTGTTTGATGACTTAGAAAGTAATGTTTGGATTTAGTTAAGACTTAGTTA
* * * * * * *
10708779 GAACCGAGCTAGAATTCTATAGATGATTTGACCTAAAACCTGTTAAGTGCATTTAATCATGGGAA
385 GAACCAAACTAGAATTCTGTAGATGATTTGACCTAAAACTTCTTAAGAGCGTTTAATCATGGGAA
* * * * *
10708844 TCAAAGGTGTCAATGGAATTATCTGATTTTTCCACCAAACCTTGTC-TCTGTTTCTTGAGTATGT
450 TCAAGGGTGTCAATGGAATTATTTGATTTTTCCACTAAACCTTGTCTTC-GTTTCATGAGTATAT
* * *
10708908 AAGGATAATGTTGGCCATCAAGAGTTGGTATTACCACAAGAACTATCGAAA-ACTCACAATGTGT
514 AAGGATAATGTTGGCCATCAAGAGTTGGAATTACCACCAGAACTATC-AAAGATTCACAATGTGT
* * **
10708972 TCCACATGTCTATGTCATGAAGGTATTGATTAAATCCAGATAATGTGGTACAAA-TAGAAGACAT
578 TCCACATGTCTATGTTACGAAGGTATTGACCAAATCCAGATAATGTGGTACAAATTA-AAGACAT
*
10709036 AGAAGTAGAGCCAAATCTATCTTATGAAGAGGAGCTTGTTTGCATTTTAGCTAAAGAAGTGAAAG
642 AGAAGTAGAGCCAAATCTATCTTATGAAGAGGAGCTTGTTTGCATTTTAGCCAAAGAAGTGAAAG
10709101 AGTTAAGAAATAAGAGGATCGCATTAGTAAAAGTGTTAT-GAGGAATCATAATGA-AGAAGAAGC
707 AGTTAAGAAATAAGAGGATCGCATTAGTAAAAGTGTTATGGAGGAATCATAAT-ATAGAAGAAGC
* * *
10709164 TACTTCGAAAATGGA
771 TACTTGGGAAAGGGA
* * *
10709179 AATTTTAATGAAAGAACAATACACTCAACTTTTCACAAGTATAAATATAAATGATGAAATTTTTT
1 AATTTTAATGAAAGAACAATACACTCAACTTTTCACAAGTATAAATATCAAGGATGAAATTTTCT
*
10709244 AAGTGGGGGAGAATTGTAACTGACTGCCCGGCAGAGACCCAATATTAAGTTATTGTTTGGCATAT
66 AAGTGGGGGAGAATTGTAACTGTCTGCCCGGCAGAGACCCAATATTAAGTTATTGTTTGGCATAT
* * *
10709309 AATTGGTAAAGTAAAGGGCAGAATTGAGTAAGTAAAGTA-TTT-TTTGGCTAAATAGAGCATTTT
131 AATTGGTAAAGTCAAGGGTAGAATTGAGTAAGTAAAGTATTTTATTTGGCTAAATAGAGCACTTT
* *
10709372 GTGGGATTAGCCATTTTGCGAACTCTAGTTTTTGGCGAACTCTAGGTTTGGCAGACTCTTTAGCA
196 GTGGGATTAGCCATTTTGCGAACTCAAATTTTTGGCGAACTCTAGGTTTGGCAGACTCTTTAGCA
* * * *
10709437 AAGTATCCACCCACCCCAAATGTTTTAAAAGAACTTGTTAAGTTCACAATTAGATTAGGCTTGTT
261 AAGTATCCACCCACCCCAAATGTTTTGAAAGAACTCGTTAAGTTCACAATTTGATTAGACTTGTT
* * *
10709502 TTATGTTTAGTGTTTGATGACTTAGAAAGTAATTTTTGGATTTAGTTAAGACTTAGTTAGAATCA
326 TTATATTTAGTGTTTGATGACTTAGAAAGTAATGTTTGGATTTAGTTAAGACTTAGTTAGAACCA
10709567 AACTAGAATTCTGTAGATGATTTGACCTAAAACTTCTTAAGAGCGTTTAAGT-A-GGGCAATCAA
391 AACTAGAATTCTGTAGATGATTTGACCTAAAACTTCTTAAGAGCGTTTAA-TCATGGG-AATCAA
* * *
10709630 GGGTGTTAATGGAATTATTTGATTTTTCCACTAAACTTTGTCTTCGTTTCATGAGTTTATAAGGA
454 GGGTGTCAATGGAATTATTTGATTTTTCCACTAAACCTTGTCTTCGTTTCATGAGTATATAAGGA
* *
10709695 TAATGTTGGTCATCAAGAGTTGGAATTACCACCAGAAATATCAAAGATTCACAATGTGTTCCACA
519 TAATGTTGGCCATCAAGAGTTGGAATTACCACCAGAACTATCAAAGATTCACAATGTGTTCCACA
* *
10709760 TTTCTATGTTACGAAGGTATTGACCAAATCCAGATAATGTGGTTCAAATTAAAGACATAGAAGTA
584 TGTCTATGTTACGAAGGTATTGACCAAATCCAGATAATGTGGTACAAATTAAAGACATAGAAGTA
* * * *
10709825 AAGCCAAATCTATCTTATGTAGAGGAGCCTGTTTGCATTTTAGCCAAAGAAGTGGAAGAGTTAAG
649 GAGCCAAATCTATCTTATGAAGAGGAGCTTGTTTGCATTTTAGCCAAAGAAGTGAAAGAGTTAAG
* * * * *
10709890 AAATAAGAGGATTGCCTTAGTAAAAATGTTATGGAAGAATCATCATATAGAAGAAGCTACTTGGG
714 AAATAAGAGGATCGCATTAGTAAAAGTGTTATGGAGGAATCATAATATAGAAGAAGCTACTTGGG
10709955 AAAGGGA
779 AAAGGGA
* * *
10709962 AAGTTTAATGAAAGAAAAATACACTCAACTTTTCACAAGTATAAATATCAAGAATGAAATTTTCT
1 AATTTTAATGAAAGAACAATACACTCAACTTTTCACAAGTATAAATATCAAGGATGAAATTTTCT
** * * * * * *
10710027 AAGTGGAAGAGAATTTTAACTGTCTGCCTGGTAGAGACCAAATATTCAA-TTATTTTTTGGCGTA
66 AAGTGGGGGAGAATTGTAACTGTCTGCCCGGCAGAGACCCAATATT-AAGTTATTGTTTGGCATA
* *
10710091 CAATTGGTAAAGTCAAGGGTAGAATTGAGTAAGTAAAGTATTTTCTTTGGCTAAATAGAGCACTT
130 TAATTGGTAAAGTCAAGGGTAGAATTGAGTAAGTAAAGTATTTTATTTGGCTAAATAGAGCACTT
* * * *
10710156 TGTGGGATTACCCATTTTGCAAACTCAAATTTTTGGTGAACTCTAGGGTTTGGCAGACTATTTAG
195 TGTGGGATTAGCCATTTTGCGAACTCAAATTTTTGGCGAACTCTA-GGTTTGGCAGACTCTTTAG
* * * * * *
10710221 CTAACTGGAT--ACCCACCCCAAATGTTTTGAAAGAACTCGTTATGTTTACAGTTTGAATAGACT
259 C-AA-AGTATCCACCCACCCCAAATGTTTTGAAAGAACTCGTTAAGTTCACAATTTGATTAGACT
* * * * * *
10710284 TGTTTTATATTTAATGTTTAATTACTTAGAAAATACTGTTTGAATTTAGTTAAGACTTAGTTAGA
322 TGTTTTATATTTAGTGTTTGATGACTTAGAAAGTAATGTTTGGATTTAGTTAAGACTTAGTTAGA
* * *
10710349 ACCAGACTAGAATTCTGTAGATGATTTGAACTAAAACTTCTTAAGTA-CGTTTAATCATAGGAAT
387 ACCAAACTAGAATTCTGTAGATGATTTGACCTAAAACTTCTTAAG-AGCGTTTAATCATGGGAAT
* * *
10710413 CAAGGGTGTCAATGGAATT-TTATGATTGTTCCACTAAACCTTGTCTCCATTTCATGAGTATATA
451 CAAGGGTGTCAATGGAATTATT-TGATTTTTCCACTAAACCTTGTCTTCGTTTCATGAGTATATA
* ** *
10710477 AGGATAATGTTGGCCATCAAGAGTTAGCTTTACCACCAGAACTATCGAAGATTCACAATGTGTTC
515 AGGATAATGTTGGCCATCAAGAGTTGGAATTACCACCAGAACTATCAAAGATTCACAATGTGTTC
* * *
10710542 CACGTGTCTATGTTACGAAGGTATTGACCAAATCCAGATAATGTGGTACAAATTGAAGACACAGA
580 CACATGTCTATGTTACGAAGGTATTGACCAAATCCAGATAATGTGGTACAAATTAAAGACATAGA
*
10710607 AGTAGAGCCAAATCTATCTTATGAAGAGGAGCTTGTTTGCATTTTAGTCAAAGAAGTGAAAGAGT
645 AGTAGAGCCAAATCTATCTTATGAAGAGGAGCTTGTTTGCATTTTAGCCAAAGAAGTGAAAGAGT
* * *
10710672 TAAGAAATAAGAGGATCCCATTAGTAAATGTGTTTTGGAGGAATCATAATATAGAAGAAGCTACT
710 TAAGAAATAAGAGGATCGCATTAGTAAAAGTGTTATGGAGGAATCATAATATAGAAGAAGCTACT
10710737 TGGGAAAGGGA
775 TGGGAAAGGGA
10710748 CAA-TTTAATGAAAGAACAATACACTCAACTTTTCACAAGTATAAATATCAAGGATGAAATTTTC
1 -AATTTTAATGAAAGAACAATACACTCAACTTTTCACAAGTATAAATATCAAGGATGAAATTTTC
* * * *
10710812 TAAGTGGGGGAGAATTGTAGCTGTCTGCCCGGTAGAGACCCAATATTCAGTTATTGTATGG-AGT
65 TAAGTGGGGGAGAATTGTAACTGTCTGCCCGGCAGAGACCCAATATTAAGTTATTGTTTGGCA-T
*
10710876 ATAATTGGTAAAGTCAAGGGTAGAATTGAGTAAGTAAAGTA-TTTATATTGCCTAAATAGAGCAC
129 ATAATTGGTAAAGTCAAGGGTAGAATTGAGTAAGTAAAGTATTTTAT-TTGGCTAAATAGAGCAC
10710940 TTTGTGGGATTAGCCATTTT
193 TTTGTGGGATTAGCCATTTT
10710960 ACTGCAACAC
Statistics
Matches: 1595, Mismatches: 161, Indels: 49
0.88 0.09 0.03
Matches are distributed among these distances:
781 6 0.00
782 447 0.28
783 246 0.15
784 9 0.01
785 213 0.13
786 664 0.42
787 7 0.00
788 3 0.00
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.32
Consensus pattern (785 bp):
AATTTTAATGAAAGAACAATACACTCAACTTTTCACAAGTATAAATATCAAGGATGAAATTTTCT
AAGTGGGGGAGAATTGTAACTGTCTGCCCGGCAGAGACCCAATATTAAGTTATTGTTTGGCATAT
AATTGGTAAAGTCAAGGGTAGAATTGAGTAAGTAAAGTATTTTATTTGGCTAAATAGAGCACTTT
GTGGGATTAGCCATTTTGCGAACTCAAATTTTTGGCGAACTCTAGGTTTGGCAGACTCTTTAGCA
AAGTATCCACCCACCCCAAATGTTTTGAAAGAACTCGTTAAGTTCACAATTTGATTAGACTTGTT
TTATATTTAGTGTTTGATGACTTAGAAAGTAATGTTTGGATTTAGTTAAGACTTAGTTAGAACCA
AACTAGAATTCTGTAGATGATTTGACCTAAAACTTCTTAAGAGCGTTTAATCATGGGAATCAAGG
GTGTCAATGGAATTATTTGATTTTTCCACTAAACCTTGTCTTCGTTTCATGAGTATATAAGGATA
ATGTTGGCCATCAAGAGTTGGAATTACCACCAGAACTATCAAAGATTCACAATGTGTTCCACATG
TCTATGTTACGAAGGTATTGACCAAATCCAGATAATGTGGTACAAATTAAAGACATAGAAGTAGA
GCCAAATCTATCTTATGAAGAGGAGCTTGTTTGCATTTTAGCCAAAGAAGTGAAAGAGTTAAGAA
ATAAGAGGATCGCATTAGTAAAAGTGTTATGGAGGAATCATAATATAGAAGAAGCTACTTGGGAA
AGGGA
Found at i:10713677 original size:42 final size:42
Alignment explanation
Indices: 10713631--10713713 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
10713621 TGACGTTGAT
* * *
10713631 ATGAGAATTCGTGTAAGACCGCGTCTAGGACATGGCATCGAA
1 ATGAGAATTCATATAAGACCGCATCTAGGACATGGCATCGAA
* ** *
10713673 ATGAGATTTCATATAAGACCTTATCTAGGATATGGCATCGA
1 ATGAGAATTCATATAAGACCGCATCTAGGACATGGCATCGA
10713714 TGTAAGATTC
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.27
Consensus pattern (42 bp):
ATGAGAATTCATATAAGACCGCATCTAGGACATGGCATCGAA
Found at i:10728936 original size:16 final size:17
Alignment explanation
Indices: 10728915--10728947 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
10728905 TTACTTGTGT
10728915 GGGGCCCACAC-GCCCA
1 GGGGCCCACACGGCCCA
*
10728931 GGGGCCTACACGGCCCA
1 GGGGCCCACACGGCCCA
10728948 TTTCAGCTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.18, C:0.45, G:0.33, T:0.03
Consensus pattern (17 bp):
GGGGCCCACACGGCCCA
Found at i:10729982 original size:18 final size:18
Alignment explanation
Indices: 10729909--10729990 Score: 94
Period size: 18 Copynumber: 4.6 Consensus size: 18
10729899 ATTAAGTAAA
*
10729909 AGTAAACAGTGCAGTAAC
1 AGTAAACAGTGCAGTATC
* *
10729927 AATAAATAGTGCAGTATC
1 AGTAAACAGTGCAGTATC
*
10729945 AGTAAACAATGTCA-TATC
1 AGTAAACAGTG-CAGTATC
* *
10729963 AGTAAATAGTGCAGTGTC
1 AGTAAACAGTGCAGTATC
10729981 AGTAAACAGT
1 AGTAAACAGT
10729991 ATGCAAGTCC
Statistics
Matches: 52, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
17 2 0.04
18 48 0.92
19 2 0.04
ACGTcount: A:0.43, C:0.13, G:0.20, T:0.24
Consensus pattern (18 bp):
AGTAAACAGTGCAGTATC
Found at i:10730382 original size:27 final size:27
Alignment explanation
Indices: 10730340--10730524 Score: 289
Period size: 27 Copynumber: 6.9 Consensus size: 27
10730330 TACATTATAT
10730340 AGGGCAAAACAGTCATTTTACCACATA
1 AGGGCAAAACAGTCATTTTACCACATA
* *
10730367 AGGGAAAAACAATCATTTTACCACATA
1 AGGGCAAAACAGTCATTTTACCACATA
* *
10730394 AGGGAAAAATAGTCATTTTACCACATA
1 AGGGCAAAACAGTCATTTTACCACATA
* * *
10730421 AGGGCAAAATAGTCATTTTTCCATATA
1 AGGGCAAAACAGTCATTTTACCACATA
* *
10730448 AGGGTAAAACAGTCATTTTACCAGATA
1 AGGGCAAAACAGTCATTTTACCACATA
10730475 AGGGCAAAACAGTCATTTTACCACATA
1 AGGGCAAAACAGTCATTTTACCACATA
10730502 AGGGCAAAACAGTCATTTTACCA
1 AGGGCAAAACAGTCATTTTACCA
10730525 ATTTGAGGGT
Statistics
Matches: 145, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 145 1.00
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.25
Consensus pattern (27 bp):
AGGGCAAAACAGTCATTTTACCACATA
Found at i:10743866 original size:16 final size:16
Alignment explanation
Indices: 10743845--10743879 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
10743835 TGTTATGGAG
*
10743845 GAATCATTATATAAAA
1 GAATCATAATATAAAA
10743861 GAATCATAATATAAAA
1 GAATCATAATATAAAA
10743877 GAA
1 GAA
10743880 GCTACTTCGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.60, C:0.06, G:0.09, T:0.26
Consensus pattern (16 bp):
GAATCATAATATAAAA
Found at i:10756085 original size:12 final size:12
Alignment explanation
Indices: 10756028--10756059 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
10756018 TTGAGTTCGA
10756028 TTATTTTTATGT
1 TTATTTTTATGT
*
10756040 TTATGTTTATGT
1 TTATTTTTATGT
10756052 TTATTTTT
1 TTATTTTT
10756060 TTCTCTTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.09, T:0.75
Consensus pattern (12 bp):
TTATTTTTATGT
Found at i:10764417 original size:30 final size:30
Alignment explanation
Indices: 10764383--10764442 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
10764373 CCATGACAAA
10764383 TTCCACACAGGCTGAG-CACATGCCCATGTG
1 TTCCACACAGGCTG-GCCACATGCCCATGTG
* * *
10764413 TTCCATACGGGCTGGCCATATGCCCATGTG
1 TTCCACACAGGCTGGCCACATGCCCATGTG
10764443 GAAGCCCGTG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 1 0.04
30 25 0.96
ACGTcount: A:0.20, C:0.32, G:0.25, T:0.23
Consensus pattern (30 bp):
TTCCACACAGGCTGGCCACATGCCCATGTG
Found at i:10767016 original size:27 final size:27
Alignment explanation
Indices: 10766980--10767035 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
10766970 CCCTCAGTTG
*
10766980 TAAAATTA-CCAAAGTACCCCCGATTTA
1 TAAAACTACCCAAA-TACCCCCGATTTA
* *
10767007 TAAAACTACCCAAATATCCTCGATTTA
1 TAAAACTACCCAAATACCCCCGATTTA
10767034 TA
1 TA
10767036 GAGTTACCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 20 0.80
28 5 0.20
ACGTcount: A:0.41, C:0.25, G:0.05, T:0.29
Consensus pattern (27 bp):
TAAAACTACCCAAATACCCCCGATTTA
Found at i:10767052 original size:54 final size:54
Alignment explanation
Indices: 10766994--10767116 Score: 149
Period size: 54 Copynumber: 2.3 Consensus size: 54
10766984 ATTACCAAAG
* * *
10766994 TACCCCCGATTTATAAAACTACCCA-AATATCCTCGATTTATAGAGTTACCATTT
1 TACCCTCGATTTATAAAACTA-CCATAATACCCTCGATTTATAGAATTACCATTT
* * * * **
10767048 TACCCTCGATTTACAGAATTATCATTTTACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAAAACTACCATAATACCCTCGATTTATAGAATTACCATTT
10767102 TACCCTCGATTTATA
1 TACCCTCGATTTATA
10767117 GAATTATCGT
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
53 2 0.03
54 56 0.97
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.37
Consensus pattern (54 bp):
TACCCTCGATTTATAAAACTACCATAATACCCTCGATTTATAGAATTACCATTT
Found at i:10767140 original size:26 final size:27
Alignment explanation
Indices: 10767024--10767149 Score: 182
Period size: 27 Copynumber: 4.7 Consensus size: 27
10767014 ACCCAAATAT
*
10767024 CCTCGATTTATAGAGTTACCATTTTAC
1 CCTCGATTTATAGAATTACCATTTTAC
* *
10767051 CCTCGATTTACAGAATTATCATTTTAC
1 CCTCGATTTATAGAATTACCATTTTAC
10767078 CCTCGATTTATAGAATTACCATTTTAC
1 CCTCGATTTATAGAATTACCATTTTAC
* * *
10767105 CCTCGATTTATAGAATTATC-GTTTGC
1 CCTCGATTTATAGAATTACCATTTTAC
*
10767131 CCTCGATTTACAGAATTAC
1 CCTCGATTTATAGAATTAC
10767150 TAAAATACCC
Statistics
Matches: 89, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
26 21 0.24
27 68 0.76
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.40
Consensus pattern (27 bp):
CCTCGATTTATAGAATTACCATTTTAC
Found at i:10767159 original size:53 final size:54
Alignment explanation
Indices: 10767024--10767175 Score: 153
Period size: 54 Copynumber: 2.8 Consensus size: 54
10767014 ACCCAAATAT
* * *** *
10767024 CCTCGATTTATAGAGTTACCATTTTACCCTCGATTTACAGAATTATCATTTTAC
1 CCTCGATTTACAGAATTACCAAAATACCCTCGATTTACAGAATTATCAGTTTAC
* *** * *
10767078 CCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTATC-GTTTGC
1 CCTCGATTTACAGAATTACCAAAATACCCTCGATTTACAGAATTATCAGTTTAC
* * * *
10767131 CCTCGATTTACAGAATTACTAAAATACCCTTGGTTTACAAAATTA
1 CCTCGATTTACAGAATTACCAAAATACCCTCGATTTACAGAATTA
10767176 CCAAAATACC
Statistics
Matches: 85, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
53 40 0.47
54 45 0.53
ACGTcount: A:0.30, C:0.21, G:0.10, T:0.39
Consensus pattern (54 bp):
CCTCGATTTACAGAATTACCAAAATACCCTCGATTTACAGAATTATCAGTTTAC
Found at i:10767186 original size:80 final size:81
Alignment explanation
Indices: 10766983--10767188 Score: 209
Period size: 80 Copynumber: 2.6 Consensus size: 81
10766973 TCAGTTGTAA
* * * * * * * *
10766983 AATTACCAAAGTACCCCCGATTTATAAAACTACCCAAATATCCTCGATTTATAGAGTTACCATTT
1 AATTATCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTCGATTTATAGAATTACCAGTT
10767048 TACCCTCGATTTACAG
66 TACCCTCGATTTACAG
*** * *** *
10767064 AATTATCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTATC-GTT
1 AATTATCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTCGATTTATAGAATTACCAGTT
*
10767128 TGCCCTCGATTTACAG
66 TACCCTCGATTTACAG
* * *
10767144 AATTA-CTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTC
1 AATTATC-AAAATACCCTCGATTTATAAAATTACCAAAATACCCTC
10767189 AAACAATAAA
Statistics
Matches: 98, Mismatches: 26, Indels: 3
0.77 0.20 0.02
Matches are distributed among these distances:
79 1 0.01
80 50 0.51
81 47 0.48
ACGTcount: A:0.33, C:0.24, G:0.08, T:0.34
Consensus pattern (81 bp):
AATTATCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTCGATTTATAGAATTACCAGTT
TACCCTCGATTTACAG
Found at i:10767225 original size:27 final size:27
Alignment explanation
Indices: 10767195--10767295 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 27
10767185 CCTCAAACAA
10767195 TAAAATTACCAAAATACCCCTAGTTTG
1 TAAAATTACCAAAATACCCCTAGTTTG
* *
10767222 TAAAATTACTAAAATACCCCTGGTTTG
1 TAAAATTACCAAAATACCCCTAGTTTG
* *
10767249 TAAAATTACCAAAATA-CCATTGATTTG
1 TAAAATTACCAAAATACCCCTAG-TTTG
*
10767276 TAAAA-TACCGAAATACCCCT
1 TAAAATTACCAAAATACCCCT
10767296 GTAGGGTAGA
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 13 0.20
27 52 0.80
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCCTAGTTTG
Found at i:10767323 original size:27 final size:27
Alignment explanation
Indices: 10767281--10767419 Score: 170
Period size: 27 Copynumber: 5.1 Consensus size: 27
10767271 ATTTGTAAAA
10767281 TACCGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
**
10767308 TATTGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
** * * *
10767335 TATAGAAATACCCTTGTAGGGTAAAAA
1 TACCGAAATACCCCTGTAGGGTAGAAT
*
10767362 TACCGAAATACCCCTGTAGGGAAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
* * * *
10767389 TACCGAGATACCCTTGTTGGGTAAAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
10767416 TACC
1 TACC
10767420 ATTTTGCCCC
Statistics
Matches: 95, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 95 1.00
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
TACCGAAATACCCCTGTAGGGTAGAAT
Found at i:10767660 original size:25 final size:25
Alignment explanation
Indices: 10767622--10767691 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
10767612 AGAAAGTGCT
* * *
10767622 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTCACCA
*
10767647 AAAAGGGCTTTGCCCCAGTTCATCA
1 AAAAGGGCTTTGCCCCAGTTCACCA
10767672 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
10767692 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTCACCA
Found at i:10767704 original size:24 final size:23
Alignment explanation
Indices: 10767621--10767718 Score: 88
Period size: 25 Copynumber: 4.0 Consensus size: 23
10767611 GAGAAAGTGC
*
10767621 TAAAAGGGCTATGCCCCAGTTTACC
1 TAAAAGGGCTATGCCCCAG-TTA-T
* *
10767646 GAAAAGGGCTTTGCCCCAGTTCAT
1 TAAAAGGGCTATGCCCCAGTT-AT
* *
10767670 CAAAAAGGGCTTTGCCCCAGTTAT
1 -TAAAAGGGCTATGCCCCAGTTAT
*
10767694 TAAAAGAGGCTAGGCCTCCAGTTAT
1 TAAAAG-GGCTATGCC-CCAGTTAT
10767719 ATGATAAAGC
Statistics
Matches: 62, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
23 5 0.08
24 11 0.18
25 46 0.74
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.24
Consensus pattern (23 bp):
TAAAAGGGCTATGCCCCAGTTAT
Found at i:10767715 original size:50 final size:50
Alignment explanation
Indices: 10767622--10767716 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
10767612 AGAAAGTGCT
**
10767622 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTCATCA
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTCATCA
* **
10767672 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAG-GGCTAGGCC-CCAGTT
10767717 ATATGATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 5 0.13
49 10 0.26
50 23 0.61
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.23
Consensus pattern (50 bp):
AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTCATCA
Found at i:10767896 original size:40 final size:40
Alignment explanation
Indices: 10767841--10768742 Score: 1664
Period size: 40 Copynumber: 22.6 Consensus size: 40
10767831 TATTCGAATG
* *
10767841 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
10767881 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
10767921 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
10767961 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
10768001 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
10768041 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
10768081 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
10768121 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
10768161 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
10768201 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
10768241 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
10768281 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
10768321 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
10768361 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
10768401 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
10768441 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
10768481 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
10768521 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
*
10768561 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
*
10768601 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * *
10768641 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * * * *
10768681 ATATCTGGGCGAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATT
*
10768721 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
10768743 TACTTGGGTT
Statistics
Matches: 842, Mismatches: 19, Indels: 3
0.97 0.02 0.00
Matches are distributed among these distances:
39 13 0.02
40 827 0.98
41 2 0.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
Found at i:10769003 original size:48 final size:48
Alignment explanation
Indices: 10768951--10769047 Score: 185
Period size: 48 Copynumber: 2.0 Consensus size: 48
10768941 AAGTAAGTAT
*
10768951 GATTTTGAGAACATGCATATATGCAATTGTTCATTTAGTCATATGAAC
1 GATTTTGAGAACATGCATATATGCAATTATTCATTTAGTCATATGAAC
10768999 GATTTTGAGAACATGCATATATGCAATTATTCATTTAGTCATATGAAC
1 GATTTTGAGAACATGCATATATGCAATTATTCATTTAGTCATATGAAC
10769047 G
1 G
10769048 CTATACTTTA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.34, C:0.12, G:0.16, T:0.37
Consensus pattern (48 bp):
GATTTTGAGAACATGCATATATGCAATTATTCATTTAGTCATATGAAC
Found at i:10777109 original size:40 final size:41
Alignment explanation
Indices: 10777054--10777235 Score: 248
Period size: 40 Copynumber: 4.6 Consensus size: 41
10777044 TATTCGAATG
* *
10777054 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGCTA-TTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGACT
*
10777094 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGACT
* *
10777134 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGC-ATTTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGACT
* *
10777174 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGACT
* *
10777214 ATATTC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
10777236 TACTTGGGTT
Statistics
Matches: 129, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
39 15 0.12
40 110 0.85
41 4 0.03
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (41 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGACT
Found at i:10779964 original size:6 final size:6
Alignment explanation
Indices: 10779953--10779987 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
10779943 TTAAAACTAC
10779953 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
10779988 TTAGTAGATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTTA
Found at i:10783571 original size:41 final size:40
Alignment explanation
Indices: 10783460--10783559 Score: 139
Period size: 40 Copynumber: 2.5 Consensus size: 40
10783450 TGTGTGCATT
* * *
10783460 TTGAGATAGCTTCGGCAATATATGGCACTTAGTGTGCTGC
1 TTGAGATAGCTTCGGCTATATATGGCACTTAATGTGCGGC
*
10783500 TTG-GAATAGCTTCGGCTATATATGGCACTTAATGTGCGGGG
1 TTGAG-ATAGCTTCGGCTATATATGGCACTTAATGTGC-GGC
10783541 TTGAGATAGCTTCGGCTAT
1 TTGAGATAGCTTCGGCTAT
10783560 GAAAGGCACT
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
39 1 0.02
40 33 0.62
41 18 0.34
42 1 0.02
ACGTcount: A:0.22, C:0.16, G:0.29, T:0.33
Consensus pattern (40 bp):
TTGAGATAGCTTCGGCTATATATGGCACTTAATGTGCGGC
Found at i:10789940 original size:27 final size:27
Alignment explanation
Indices: 10789906--10790036 Score: 190
Period size: 27 Copynumber: 4.9 Consensus size: 27
10789896 GCGTGTGCAA
* *
10789906 TTGTAAAATTATTGAAATACCCCCAAT
1 TTGTAAAATTATCGAAATACCCCCAGT
* * *
10789933 TTATAAAATTATCAAAATACCCTCAGT
1 TTGTAAAATTATCGAAATACCCCCAGT
* *
10789960 TTGTAAAATTATCGAAATACCTCTAGT
1 TTGTAAAATTATCGAAATACCCCCAGT
*
10789987 TTGTAAAATTATTGAAATACCCCCAGT
1 TTGTAAAATTATCGAAATACCCCCAGT
10790014 TTGTAAAATTATCGAAATACCCC
1 TTGTAAAATTATCGAAATACCCC
10790037 TATAGGGTAA
Statistics
Matches: 90, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 90 1.00
ACGTcount: A:0.40, C:0.18, G:0.08, T:0.34
Consensus pattern (27 bp):
TTGTAAAATTATCGAAATACCCCCAGT
Found at i:10790452 original size:22 final size:22
Alignment explanation
Indices: 10790404--10790463 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
10790394 TTAATCTGAT
10790404 TATGGCTCTGTGCCAACCTAAA
1 TATGGCTCTGTGCCAACCTAAA
* * * * *
10790426 AATGGCTCTGTGCCATCTTTAC
1 TATGGCTCTGTGCCAACCTAAA
*
10790448 TATGGCTTTGTGCCAA
1 TATGGCTCTGTGCCAA
10790464 ACATATTTAC
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.33
Consensus pattern (22 bp):
TATGGCTCTGTGCCAACCTAAA
Found at i:10791627 original size:48 final size:48
Alignment explanation
Indices: 10791554--10791650 Score: 167
Period size: 48 Copynumber: 2.0 Consensus size: 48
10791544 CTGACTGAGG
* *
10791554 TTGAAATTCTGCCTGATATGGCTTATGATGAAGAACTGATATAGATTT
1 TTGAAATTCAGCCTGATATGGCTTATGATGAAGAACCGATATAGATTT
*
10791602 TTGAAATTCAGCCTGATATGTCTTATGATGAAGAACCGATATAGATTT
1 TTGAAATTCAGCCTGATATGGCTTATGATGAAGAACCGATATAGATTT
10791650 T
1 T
10791651 AGCTCATGAG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.37
Consensus pattern (48 bp):
TTGAAATTCAGCCTGATATGGCTTATGATGAAGAACCGATATAGATTT
Found at i:10793082 original size:41 final size:41
Alignment explanation
Indices: 10792979--10793113 Score: 123
Period size: 41 Copynumber: 3.3 Consensus size: 41
10792969 ACGTTTTGAG
* ** *
10792979 ATAGCTTCGGCAATATTTGACACTTAGTGTGCGA-CTTGGA
1 ATAGCTTCGGCTATATAAGGCACTTAGTGTGCGAGCTTGGA
* *
10793019 ATAGCTTCGGCTATATATGGCACTTAGTGTGCGAGGTT-GA
1 ATAGCTTCGGCTATATAAGGCACTTAGTGTGCGAGCTTGGA
* ** * **
10793059 GATAGCTTTGGCTATGA-AAGGCACTTACAGTGCGAGATTATA
1 -ATAGCTTCGGCTAT-ATAAGGCACTTAGTGTGCGAGCTTGGA
10793101 ATAGCTTCGGCTA
1 ATAGCTTCGGCTA
10793114 AGCTTTAGCA
Statistics
Matches: 80, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
40 33 0.41
41 45 0.56
42 2 0.03
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (41 bp):
ATAGCTTCGGCTATATAAGGCACTTAGTGTGCGAGCTTGGA
Found at i:10794505 original size:54 final size:54
Alignment explanation
Indices: 10794418--10794591 Score: 190
Period size: 54 Copynumber: 3.2 Consensus size: 54
10794408 ATAGGCAAAT
* * * **
10794418 CAGTCATTTTACCTTACAGGGGTATTACAGTCATTTTACCCTACAAGGGTATTA
1 CAGTCATTTTACCCTACAGGGGTATTTCGGTCATTTTACCCTATGAGGGTATTA
* * * *
10794472 CAGTTATTTTACCCTACAGGGGTATTTTGGTCATTTTACCCTATGGGGGTATTT
1 CAGTCATTTTACCCTACAGGGGTATTTCGGTCATTTTACCCTATGAGGGTATTA
** * * *
10794526 TGGTCATTTTACCCTA-TGGCGGTATTTCGCTCATTTTACCCTATGAGGGTATTT
1 CAGTCATTTTACCCTACAGG-GGTATTTCGGTCATTTTACCCTATGAGGGTATTA
10794580 C-GATCATTTTAC
1 CAG-TCATTTTAC
10794592 ATTATGGGAT
Statistics
Matches: 101, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
53 3 0.03
54 98 0.97
ACGTcount: A:0.21, C:0.20, G:0.19, T:0.40
Consensus pattern (54 bp):
CAGTCATTTTACCCTACAGGGGTATTTCGGTCATTTTACCCTATGAGGGTATTA
Found at i:10794597 original size:27 final size:26
Alignment explanation
Indices: 10794420--10794591 Score: 164
Period size: 27 Copynumber: 6.4 Consensus size: 26
10794410 AGGCAAATCA
* * * *
10794420 GTCATTTTACCTTACAGGGGTATTACA
1 GTCATTTTACCCTA-TGGGGTATTTCG
** * *
10794447 GTCATTTTACCCTACAAGGGTATTACA
1 GTCATTTTACCCTA-TGGGGTATTTCG
* * *
10794474 GTTATTTTACCCTACAGGGGTATTTTG
1 GTCATTTTACCCTA-TGGGGTATTTCG
*
10794501 GTCATTTTACCCTATGGGGGTATTTTG
1 GTCATTTTACCCTAT-GGGGTATTTCG
10794528 GTCATTTTACCCTATGGCGGTATTTCG
1 GTCATTTTACCCTATGG-GGTATTTCG
*
10794555 CTCATTTTACCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATG-GGGTATTTCG
*
10794582 ATCATTTTAC
1 GTCATTTTAC
10794592 ATTATGGGAT
Statistics
Matches: 130, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
26 2 0.02
27 127 0.98
28 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.41
Consensus pattern (26 bp):
GTCATTTTACCCTATGGGGTATTTCG
Found at i:10797542 original size:15 final size:14
Alignment explanation
Indices: 10797504--10797544 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
10797494 AATTATCATT
*
10797504 TAATTGTGATTTTA
1 TAATTGTGATATTA
10797518 TAATTGTGATATTA
1 TAATTGTGATATTA
*
10797532 TGATCTGTGATAT
1 TAAT-TGTGATAT
10797545 ATGCATGGAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 16 0.67
15 8 0.33
ACGTcount: A:0.29, C:0.02, G:0.17, T:0.51
Consensus pattern (14 bp):
TAATTGTGATATTA
Found at i:10799703 original size:47 final size:47
Alignment explanation
Indices: 10799618--10799736 Score: 148
Period size: 47 Copynumber: 2.5 Consensus size: 47
10799608 CTTCGGGACT
* * * * * *
10799618 TATCACATTTATACACATTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
* * * *
10799665 TGTTACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
10799712 TATCACATATATACACTTTCACATT
1 TATCACATATATACACTTTCACATT
10799737 ACCAACCCTT
Statistics
Matches: 60, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
47 60 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
Found at i:10799998 original size:40 final size:39
Alignment explanation
Indices: 10799961--10800052 Score: 132
Period size: 39 Copynumber: 2.3 Consensus size: 39
10799951 GCTACTCGTT
*
10799961 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CATAGCCCGGAAT-TAGTAACTCGCA
* *
10800001 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
10800040 CAAATGCCTTCGG
1 CAAATGCCTTCGG
10800053 ATCTTAGTCC
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
39 33 0.69
40 15 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
Found at i:10800032 original size:39 final size:40
Alignment explanation
Indices: 10799942--10800102 Score: 170
Period size: 40 Copynumber: 4.0 Consensus size: 40
10799932 CGGAATTTAA
** *
10799942 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
10799982 CCGGTTATAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
10800021 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
10800061 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
10800101 CC
1 CC
10800103 AGACATCATT
Statistics
Matches: 102, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
38 3 0.03
39 32 0.31
40 55 0.54
41 12 0.12
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:10804599 original size:3 final size:3
Alignment explanation
Indices: 10804593--10804671 Score: 54
Period size: 3 Copynumber: 26.3 Consensus size: 3
10804583 ACACAAAAAA
* * * * *
10804593 AAT AAT ACT AA- ATT AAT CAT AAT AAT AAT AAT AAT AGT AAC AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
10804640 AAT AAC AGT AAT AGA- ATT AATT AAT AAT AAT A
1 AAT AAT AAT AAT A-AT AAT AA-T AAT AAT AAT A
10804672 TTAAAATTAA
Statistics
Matches: 56, Mismatches: 16, Indels: 8
0.70 0.20 0.10
Matches are distributed among these distances:
2 1 0.02
3 51 0.91
4 4 0.07
ACGTcount: A:0.59, C:0.05, G:0.04, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:10804637 original size:18 final size:18
Alignment explanation
Indices: 10804616--10804650 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
10804606 TAATCATAAT
*
10804616 AATAATAATAATAGTAAC
1 AATAATAATAACAGTAAC
10804634 AATAATAATAACAGTAA
1 AATAATAATAACAGTAA
10804651 TAGAATTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.63, C:0.06, G:0.06, T:0.26
Consensus pattern (18 bp):
AATAATAATAACAGTAAC
Found at i:10807716 original size:40 final size:40
Alignment explanation
Indices: 10807671--10808257 Score: 1032
Period size: 40 Copynumber: 14.6 Consensus size: 40
10807661 CAAGCTCAAT
* * * * *
10807671 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
10807711 TGCCTTCGGGTCTTAGCCCGGATATATCAACTT-GCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA-TTCGCACAAA
10807751 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* * *
10807791 CGCCGTCGGGTCTTAGCCCGGATATATCAGTTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
10807831 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
10807871 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
10807911 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
10807951 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
10807991 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
10808031 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
10808071 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
10808111 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
10808151 TGCCTTCGGGTCTTAGCCCGGATATATGATATATCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCA-AT-TCGCACAAA
* *
10808193 TGCCTTCTGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
10808233 TGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
10808258 CATTCAAATG
Statistics
Matches: 524, Mismatches: 19, Indels: 8
0.95 0.03 0.01
Matches are distributed among these distances:
39 2 0.00
40 482 0.92
41 5 0.01
42 35 0.07
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
Found at i:10812161 original size:88 final size:88
Alignment explanation
Indices: 10812034--10812337 Score: 423
Period size: 88 Copynumber: 3.5 Consensus size: 88
10812024 GCTATATTGC
* *
10812034 AACTTC-AGAGAGATAAGGATT-GTGGCTTCAATCTACTCCAATGTAATTTCAGGGAGAAGAGAT
1 AACTTCAAG-GAGATAAGG-TTGGTGGCTTCAATCTGCTCCAATGTAATTTTAGGGAGAAGAGAT
*
10812097 TTGTAGCTTCGATCTACTCCGCTGG
64 TTATAGCTTCGATCTACTCCGCTGG
* * *
10812122 AACTTCAAGGAGATAAGGTTGGTGGCTTTAATCCGCTCCAATATAATTTTAGGGAGAAGAGATTT
1 AACTTCAAGGAGATAAGGTTGGTGGCTTCAATCTGCTCCAATGTAATTTTAGGGAGAAGAGATTT
* *
10812187 ATAGCTTTGATCTACTCCACTGG
66 ATAGCTTCGATCTACTCCGCTGG
* * * *
10812210 AACTTCAAGGAGATAAGATTGGTGGCTTCAATCTGCCCCAATGTAATTTTAGGGATAATAGATTT
1 AACTTCAAGGAGATAAGGTTGGTGGCTTCAATCTGCTCCAATGTAATTTTAGGGAGAAGAGATTT
* * *
10812275 TTAGCTTCGATCTACTTCGCTAG
66 ATAGCTTCGATCTACTCCGCTGG
* *
10812298 AACTTCAAGGAGATAAGGCTGGTGGCTTCAATCTACTCCA
1 AACTTCAAGGAGATAAGGTTGGTGGCTTCAATCTGCTCCA
10812338 CTGCAACTTC
Statistics
Matches: 190, Mismatches: 24, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
87 2 0.01
88 186 0.98
89 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (88 bp):
AACTTCAAGGAGATAAGGTTGGTGGCTTCAATCTGCTCCAATGTAATTTTAGGGAGAAGAGATTT
ATAGCTTCGATCTACTCCGCTGG
Found at i:10812346 original size:44 final size:44
Alignment explanation
Indices: 10811914--10812503 Score: 205
Period size: 44 Copynumber: 13.1 Consensus size: 44
10811904 CAGGGAAAAG
* ** **
10811914 AGATTTGTAGCTTCAATCTACTCTGCTAAAACTTCAAGGAGATA
1 AGATTTGTGGCTTCAATCTACTCCACTGTAACTTCAAGGAGATA
* * *
10811958 AGA-AT-TGGCAATTTCAACCTACTCCACTGTAACTTCAGGGAGATA
1 AGATTTGTGGC---TTCAATCTACTCCACTGTAACTTCAAGGAGATA
* * ** ** * ** * *
10812003 TGGTTTGTGTATTTTTATCCTGCTATATTGCAACTTC-AGAGAGATA
1 AGATTTGTG-GCTTCAAT-CTACTCCACTGTAACTTCAAG-GAGATA
* * *
10812049 AGGA-TTGTGGCTTCAATCTACTCCAATGTAATTTCAGGGAGA-A
1 A-GATTTGTGGCTTCAATCTACTCCACTGTAACTTCAAGGAGATA
* * * *
10812092 GAGATTTGTAGCTTCGATCTACTCCGCTGGAACTTCAAGGAGATA
1 -AGATTTGTGGCTTCAATCTACTCCACTGTAACTTCAAGGAGATA
* * * ** * * * * *
10812137 AGGTTGGTGGCTTTAATCCGCTCCAATATAATTTTAGGGAGA-A
1 AGATTTGTGGCTTCAATCTACTCCACTGTAACTTCAAGGAGATA
* * ** *
10812180 GAGATTTATAGCTTTGATCTACTCCACTGGAACTTCAAGGAGATA
1 -AGATTTGTGGCTTCAATCTACTCCACTGTAACTTCAAGGAGATA
* * * * **
10812225 AGATTGGTGGCTTCAATCTGCCCCAATGTAA-TTTTAGG-GATAA
1 AGATTTGTGGCTTCAATCTACTCCACTGTAACTTCAAGGAGAT-A
* * * * *
10812268 TAGATTTTTAGCTTCGATCTACTTCGCTAG-AACTTCAAGGAGATA
1 -AGATTTGTGGCTTCAATCTACTCCACT-GTAACTTCAAGGAGATA
** * *
10812313 AGGCTGGTGGCTTCAATCTACTCCACTGCAACTTC-AGGAAGATA
1 AGATTTGTGGCTTCAATCTACTCCACTGTAACTTCAAGG-AGATA
* * * ** ** *
10812357 AGATTCGCCATAGTTTATAGCTTTAATATGTTCCACTACAACGTCAAGGA-AGTA
1 AGATT-----T-G----TGGCTTCAATCTACTCCACTGTAACTTCAAGGAGA-TA
* * * * *
10812411 AGATTCGCTGTCTTCAGTCTGCTCCACTGTAACTTCAGGGAGATA
1 AGATTTG-TGGCTTCAATCTACTCCACTGTAACTTCAAGGAGATA
* * * *
10812456 AGGTTGGTGGCTTCAATCTGCTCCACTGCAACTTC-AGGAAGATA
1 AGATTTGTGGCTTCAATCTACTCCACTGTAACTTCAAGG-AGATA
10812500 AGAT
1 AGAT
10812504 CCGCCATAAT
Statistics
Matches: 382, Mismatches: 128, Indels: 72
0.66 0.22 0.12
Matches are distributed among these distances:
42 6 0.02
43 17 0.04
44 216 0.57
45 76 0.20
46 29 0.08
47 3 0.01
48 1 0.00
50 1 0.00
53 1 0.00
54 29 0.08
55 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (44 bp):
AGATTTGTGGCTTCAATCTACTCCACTGTAACTTCAAGGAGATA
Found at i:10812556 original size:143 final size:143
Alignment explanation
Indices: 10812279--10812600 Score: 432
Period size: 143 Copynumber: 2.3 Consensus size: 143
10812269 AGATTTTTAG
* * * *
10812279 CTTCGATCTACTTCGCTAGAACTTCAAGGAGATAAGGCTGGTGGCTTCAATCTACTCCACTGCAA
1 CTTCGATCTGCTCCACTACAACTTCAAGGAGATAAGGCTGGTGGCTTCAATCTACTCCACTGCAA
* * * * *
10812344 CTTCAGGAAGATAAGATTCGCCATAGTTTATAGCTTTAATATGTTCCACTACAACGTCAAGGAAG
66 CTTCAGGAAGATAAGATCCGCCATAATTCATAGCTTCAATATGTTCCACTACAACGTCAAGGAAA
*
10812409 TAAGATTCGCTGT
131 TAAGATTCACTGT
** * * *
10812422 CTTC-AGTCTGCTCCACTGTAACTTCAGGGAGATAAGGTTGGTGGCTTCAATCTGCTCCACTGCA
1 CTTCGA-TCTGCTCCACTACAACTTCAAGGAGATAAGGCTGGTGGCTTCAATCTACTCCACTGCA
* * *
10812486 ACTTCAGGAAGATAAGATCCGCCATAATTCGTAGCTTCAATCTGTTCCACTGCAAC-TCCAAGGA
65 ACTTCAGGAAGATAAGATCCGCCATAATTCATAGCTTCAATATGTTCCACTACAACGT-CAAGGA
*
10812550 AATAAGATTCACTTT
129 AATAAGATTCACTGT
*
10812565 CTTCGATCTGCTCCACTACAACTTCAAGAAGATAAG
1 CTTCGATCTGCTCCACTACAACTTCAAGGAGATAAG
10812601 ATCTATAACT
Statistics
Matches: 154, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
142 2 0.01
143 151 0.98
144 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (143 bp):
CTTCGATCTGCTCCACTACAACTTCAAGGAGATAAGGCTGGTGGCTTCAATCTACTCCACTGCAA
CTTCAGGAAGATAAGATCCGCCATAATTCATAGCTTCAATATGTTCCACTACAACGTCAAGGAAA
TAAGATTCACTGT
Found at i:10812613 original size:143 final size:143
Alignment explanation
Indices: 10812323--10812646 Score: 384
Period size: 143 Copynumber: 2.3 Consensus size: 143
10812313 AGGCTGGTGG
* * * * *
10812323 CTTCAATCTACTCCACTGCAACTTCAGGAAGATAAGATTCGCCATAGTTTATAGCTTTAATATGT
1 CTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTCATAGCTTCAATATGT
* * ** * *
10812388 TCCACTACAACGTCAAGGAAGTAAGATTCGCTGTCTTCAGTCTGCTCCACTGTAACTTCAGGGAG
66 TCCACTACAACGTCAAGGAAATAAGATTCACTGTCTTCAGTCTGCTCCACTACAACTTCAAGAAG
* * **
10812453 ATAAGGTTGGTGG
131 ATAAGATTGATAA
* *
10812466 CTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTCGTAGCTTCAATCTGT
1 CTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTCATAGCTTCAATATGT
* *
10812531 TCCACTGCAAC-TCCAAGGAAATAAGATTCACTTTCTTC-GATCTGCTCCACTACAACTTCAAGA
66 TCCACTACAACGT-CAAGGAAATAAGATTCACTGTCTTCAG-TCTGCTCCACTACAACTTCAAGA
10812594 AGATAAGATCT-ATAA
129 AGATAAGAT-TGATAA
* * * * *
10812609 CTTCAATATGCTCCACTACTACTTCAGGGAGATGAGAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGAT
10812647 TTATGACTTC
Statistics
Matches: 154, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
142 2 0.01
143 151 0.98
144 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (143 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTCATAGCTTCAATATGT
TCCACTACAACGTCAAGGAAATAAGATTCACTGTCTTCAGTCTGCTCCACTACAACTTCAAGAAG
ATAAGATTGATAA
Found at i:10812679 original size:44 final size:44
Alignment explanation
Indices: 10812520--10812692 Score: 159
Period size: 44 Copynumber: 3.9 Consensus size: 44
10812510 TAATTCGTAG
* * * * * **
10812520 CTTCAATCTGTTCCACTGCAACTCCAAGGAAATAAGATTCACTTT
1 CTTCAATCTGCTCCACTACAACTTCAAGGAGATAAGATTTA-TAA
* * *
10812565 CTTCGATCTGCTCCACTACAACTTCAAGAAGATAAGATCTATAA
1 CTTCAATCTGCTCCACTACAACTTCAAGGAGATAAGATTTATAA
* * * * *
10812609 CTTCAATATGCTCCACTACTACTTCAGGGAGATGAGATTTATGA
1 CTTCAATCTGCTCCACTACAACTTCAAGGAGATAAGATTTATAA
* * *
10812653 CTTCAATCTGCTCCACTGCTACTTC-AGAGAGATGAGATTT
1 CTTCAATCTGCTCCACTACAACTTCAAG-GAGATAAGATTT
10812693 GTGGATTCAC
Statistics
Matches: 106, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
43 1 0.01
44 72 0.68
45 33 0.31
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (44 bp):
CTTCAATCTGCTCCACTACAACTTCAAGGAGATAAGATTTATAA
Found at i:10815778 original size:46 final size:44
Alignment explanation
Indices: 10815728--10815909 Score: 148
Period size: 46 Copynumber: 4.2 Consensus size: 44
10815718 TTTTGTGGTT
*
10815728 TCTTCCATCTATCCCACTGCAACTCAGGGGTATAGGATTTGTACC
1 TCTTCAATCTATCCCACTGCAACTCAGGGGTATAGGATTTGTA-C
* * * *
10815773 ATCTTCAATCAATCCCATTGCAGCTCAGGGGTATAAGATTTG---
1 -TCTTCAATCTATCCCACTGCAACTCAGGGGTATAGGATTTGTAC
* * **
10815815 ---T--ATCT-TCCCACTGCAATTCAGGGGTATAGAATCCGTATC
1 TCTTCAATCTATCCCACTGCAACTCAGGGGTATAGGATTTGTA-C
* *
10815854 TTCTTCAATCCATCCCACTGCAACTCAGGGGTATAGGGTTTGTAGC
1 -TCTTCAATCTATCCCACTGCAACTCAGGGGTATAGGATTTGTA-C
10815900 TTCTTCAATC
1 -TCTTCAATC
10815910 AATTTGATAT
Statistics
Matches: 105, Mismatches: 20, Indels: 22
0.71 0.14 0.15
Matches are distributed among these distances:
35 23 0.22
36 3 0.03
38 1 0.01
43 1 0.01
45 3 0.03
46 74 0.70
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (44 bp):
TCTTCAATCTATCCCACTGCAACTCAGGGGTATAGGATTTGTAC
Found at i:10815881 original size:81 final size:81
Alignment explanation
Indices: 10815734--10815902 Score: 221
Period size: 81 Copynumber: 2.1 Consensus size: 81
10815724 GGTTTCTTCC
* ** * *
10815734 ATCTATCCCACTGCAACTCAGGGGTATAGGATTTGTACCATCTTCAATCAATCCCATTGCAGCTC
1 ATCT-TCCCACTGCAACTCAGGGGTATAGAATCCGTACCATCTTCAATCAATCCCACTGCAACTC
10815799 AGGGGTATAAGATTTGT
65 AGGGGTATAAGATTTGT
* * * *
10815816 ATCTTCCCACTGCAATTCAGGGGTATAGAATCCGTATCTTCTTCAATCCATCCCACTGCAACTCA
1 ATCTTCCCACTGCAACTCAGGGGTATAGAATCCGTACCATCTTCAATCAATCCCACTGCAACTCA
* *
10815881 GGGGTATAGGGTTTGT
66 GGGGTATAAGATTTGT
*
10815897 AGCTTC
1 ATCTTC
10815903 TTCAATCAAT
Statistics
Matches: 75, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
81 71 0.95
82 4 0.05
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.31
Consensus pattern (81 bp):
ATCTTCCCACTGCAACTCAGGGGTATAGAATCCGTACCATCTTCAATCAATCCCACTGCAACTCA
GGGGTATAAGATTTGT
Found at i:10816745 original size:17 final size:18
Alignment explanation
Indices: 10816723--10816756 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
10816713 GGCCTCTCCT
*
10816723 TTTTCT-TTTCTTTTTTC
1 TTTTCTCTTCCTTTTTTC
10816740 TTTTCTCTTCCTTTTTT
1 TTTTCTCTTCCTTTTTT
10816757 TTGGGGGGGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTTCTCTTCCTTTTTTC
Found at i:10817308 original size:22 final size:22
Alignment explanation
Indices: 10817283--10817325 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
10817273 TCCCACAATC
*
10817283 TTTTTGTGTTTTTTTATTTTTA
1 TTTTTGTGTTTTTATATTTTTA
*
10817305 TTTTTTTGTTTTTATATTTTT
1 TTTTTGTGTTTTTATATTTTT
10817326 TTGTTTTTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.09, C:0.00, G:0.07, T:0.84
Consensus pattern (22 bp):
TTTTTGTGTTTTTATATTTTTA
Found at i:10817310 original size:16 final size:15
Alignment explanation
Indices: 10817291--10817341 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
10817281 TCTTTTTGTG
*
10817291 TTTTTTTATTTTTAT
1 TTTTTTTTTTTTTAT
*
10817306 TTTTTTGTTTTTATAT
1 TTTTTT-TTTTTTTAT
* *
10817322 TTTTTTGTTTTTTCT
1 TTTTTTTTTTTTTAT
10817337 TTTTT
1 TTTTT
10817342 GGCTGCCTCT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
15 17 0.57
16 13 0.43
ACGTcount: A:0.08, C:0.02, G:0.04, T:0.86
Consensus pattern (15 bp):
TTTTTTTTTTTTTAT
Found at i:10817332 original size:22 final size:22
Alignment explanation
Indices: 10817297--10817340 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
10817287 TGTGTTTTTT
10817297 TATTTTTATTTTTTTGTTTTTA
1 TATTTTTATTTTTTTGTTTTTA
* *
10817319 TATTTTTTTGTTTTTTCTTTTT
1 TATTTTTAT-TTTTTTGTTTTT
10817341 TGGCTGCCTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.09, C:0.02, G:0.05, T:0.84
Consensus pattern (22 bp):
TATTTTTATTTTTTTGTTTTTA
Found at i:10817339 original size:14 final size:14
Alignment explanation
Indices: 10817291--10817342 Score: 61
Period size: 14 Copynumber: 3.6 Consensus size: 14
10817281 TCTTTTTGTG
*
10817291 TTTTTTTATTTTTA
1 TTTTTTTGTTTTTA
10817305 TTTTTTTGTTTTTATA
1 TTTTTTTG-TTTT-TA
10817321 TTTTTTTGTTTTT-
1 TTTTTTTGTTTTTA
10817334 TCTTTTTTG
1 T-TTTTTTG
10817343 GCTGCCTCTG
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
13 1 0.03
14 15 0.44
15 8 0.24
16 10 0.29
ACGTcount: A:0.08, C:0.02, G:0.06, T:0.85
Consensus pattern (14 bp):
TTTTTTTGTTTTTA
Found at i:10822184 original size:3 final size:3
Alignment explanation
Indices: 10822176--10822232 Score: 78
Period size: 3 Copynumber: 18.7 Consensus size: 3
10822166 TTAATGATAC
* * *
10822176 AAT AAT AAT AAT AAT AGT AGT AAC AAT AAT AAT AAT AAT AATT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT
10822222 AAT AAT AAT AA
1 AAT AAT AAT AA
10822233 AATTAATTAA
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
3 46 0.94
4 3 0.06
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:10822243 original size:16 final size:18
Alignment explanation
Indices: 10822204--10822243 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
10822194 AGTAACAATA
10822204 ATAATAATAATAATTAAT
1 ATAATAATAATAATTAAT
10822222 AATAATAATAA-AATTAAT
1 -ATAATAATAATAATTAAT
10822240 -TAAT
1 ATAAT
10822244 TTAATGATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.19
18 7 0.33
19 10 0.48
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
ATAATAATAATAATTAAT
Found at i:10825655 original size:14 final size:14
Alignment explanation
Indices: 10825636--10825663 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
10825626 AATAAAAGGC
10825636 AAAGATTATAAATA
1 AAAGATTATAAATA
10825650 AAAGATTATAAATA
1 AAAGATTATAAATA
10825664 TTATACATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.29
Consensus pattern (14 bp):
AAAGATTATAAATA
Found at i:10829175 original size:43 final size:43
Alignment explanation
Indices: 10829110--10829192 Score: 148
Period size: 43 Copynumber: 1.9 Consensus size: 43
10829100 GGATCCTTGG
10829110 TAGGGAAAATTTCCACAAGGTCTTCAAACTTCCAAAGAGGTAA
1 TAGGGAAAATTTCCACAAGGTCTTCAAACTTCCAAAGAGGTAA
* *
10829153 TAGGGAAAGTTTCCACACGGTCTTCAAACTTCCAAAGAGG
1 TAGGGAAAATTTCCACAAGGTCTTCAAACTTCCAAAGAGG
10829193 CAAATCATCC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.23
Consensus pattern (43 bp):
TAGGGAAAATTTCCACAAGGTCTTCAAACTTCCAAAGAGGTAA
Found at i:10838381 original size:20 final size:20
Alignment explanation
Indices: 10838356--10838396 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
10838346 TGGGCTGAGG
10838356 ACACGGGCGTGTCCCATGCC
1 ACACGGGCGTGTCCCATGCC
*
10838376 ACACGGGTGTGTCCCATGCC
1 ACACGGGCGTGTCCCATGCC
10838396 A
1 A
10838397 TACGAGCATG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.17, C:0.37, G:0.29, T:0.17
Consensus pattern (20 bp):
ACACGGGCGTGTCCCATGCC
Found at i:10842921 original size:40 final size:40
Alignment explanation
Indices: 10842866--10843083 Score: 332
Period size: 40 Copynumber: 5.5 Consensus size: 40
10842856 CGGATGATAA
* *
10842866 CCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
10842906 CCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
10842946 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
10842986 CCGGGCTAAGTCCCAAAGGTATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
10843026 CCGGGCTAAGTCCCGAAGGCATTTGAGCG-GGTAGCTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
10843066 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
10843084 TACTTGGTTT
Statistics
Matches: 165, Mismatches: 12, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
39 18 0.11
40 147 0.89
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:10844891 original size:24 final size:25
Alignment explanation
Indices: 10844832--10844901 Score: 88
Period size: 24 Copynumber: 2.8 Consensus size: 25
10844822 GCGGACTCAC
*
10844832 CTCAGCTCGTATGAGCTTACCTATAT
1 CTCAGCTCGTAAGAGCTTA-CTATAT
* *
10844858 ATCAGCTCGTAAGAGCTTACTGT-T
1 CTCAGCTCGTAAGAGCTTACTATAT
*
10844882 CTCAGCTCGTCAGAGCTTAC
1 CTCAGCTCGTAAGAGCTTAC
10844902 AATTTCAACT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
24 19 0.49
25 3 0.08
26 17 0.44
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (25 bp):
CTCAGCTCGTAAGAGCTTACTATAT
Found at i:10846850 original size:29 final size:28
Alignment explanation
Indices: 10846805--10846878 Score: 94
Period size: 29 Copynumber: 2.6 Consensus size: 28
10846795 GCCCCTTAAA
*
10846805 CCCAATCATATTCATATGGCCCATTAGG
1 CCCAATCACATTCATATGGCCCATTAGG
* * *
10846833 CCCAAATCACATTTATATGGCTCGTTAGG
1 CCC-AATCACATTCATATGGCCCATTAGG
*
10846862 CCCAGTCACATTCATAT
1 CCCAATCACATTCATAT
10846879 TCATGCTTAC
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
28 15 0.38
29 24 0.62
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.30
Consensus pattern (28 bp):
CCCAATCACATTCATATGGCCCATTAGG
Found at i:10858308 original size:26 final size:26
Alignment explanation
Indices: 10858272--10858381 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
10858262 TGATACAAAT
10858272 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
10858298 TGATAATAGGTTAGGTAAATGTTCTA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
10858324 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
10858350 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
10858376 TGATAA
1 TGATAA
10858382 GAATTTCATG
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:10862402 original size:714 final size:710
Alignment explanation
Indices: 10861033--10862544 Score: 2224
Period size: 714 Copynumber: 2.1 Consensus size: 710
10861023 GGGTGCTACA
* * * *
10861033 GTAGGAATAAGACAATGTGGTAGAATTGTCT-GTTGGTTATTAGCATGATTTTTTAAATGATTAT
1 GTAGGAATAAGACAATGTGGTAAAATTGT-TGGTTGATTATTATCATGATATTTTAAATGATTAT
* * * *
10861097 TTTGATTTTAATACTCTTAGGTTCGTGGAGGTTGTTATTAGTTTATTGGTTTGCTTGGTTGAAAT
65 TTTGATTTTAATACTCTTAGGTTCCTAGACGTTGTTATTAGTTTATTGGTTTGCTTGGTTAAAAT
***
10861162 TATTGATATTGCTATGGAATTCTAATATGGACATTTTGATGTTTAATATTGAAATTATTGATATT
130 TATTGATATTGCTATGGAATGAGAATATGGACATTTTGATGTTTAATATTGAAATTATTGATATT
* * * * * *
10861227 GACGTGGTATGTGATTGAGTATGTGGAGTGCCCTATTTTTCTGGAATTTTTGCAGAATTATACGG
195 GAAGTGGTATGTGATTAAGTATGTAGAATGCCCTATTTTGCTGGAATTTTTGCAGAATTATACAG
** *
10861292 AGGTATCAGTAATCAGGGCATATGTATCAATACTTCTGAATTGAAACGTATGTGCAAGAAATAGT
260 AGGTATCAGTAATCAGGGCATATGTATCAATACTTCTGAATTGAAACAAATGTGCAAGAAACAGT
* * * * * *
10861357 TGCTCATTTTTCTATCGATATCAGTTCTCGAGTATCGATACTTAGGGTAAAAGTATAAATACTTT
325 TGCTCATTTTGCTATCGATACCAGTTCTCGAGTATCAACACTGAGGGTAAAAATATAAATACTTT
10861422 TGAATTGCATCGATAAATTGTTGGGTTTTGGATTTTGAAGAAGATCAGAATGGTAAAAAGGTTCC
390 TGAATTGCATCGATAAATTGTTGGGTTTTGGATTTTGAAGAAGATCAGAATGGTAAAAAGGTTCC
* ** *
10861487 AGTTTTCCAAACGGTATCGATACCCATTTTGAGAAATGTCGATTTCCATTTAGATGTTCTCATAT
455 AGTTTTCCAAACGGTATCGATACCCATTTTGAGAAATATCGATACCCAATTAGATGTTCTCATAT
10861552 AATGTATGATATCATGTTTATTGGTAGTTTTTTCCTGATCATTCACTAAGCTTGTTTAAGCTCAC
520 AATGTATGATATCATGTTTATTGGTAGTTTTTTCCTGATCATTCACTAAGCTTGTTTAAGCTCAC
* ** *
10861617 ACACTCTTTTTTGAACCTTTGCAGATAGTTAGTGTTTTTAGTGTGGGCGGTGCAAAATTCCAAGG
585 ACACTCTTTTCTGAACCTTTGCAGATAGTTAGTGTTTCCAGTGTGGGCGGTGCAAAATTCCAAGA
* * *
10861682 AAGTGATCCAAGTTAGGCTTAGTGTTTAAGTATGTGATTTTATTGTTATTATTTTTGAACT
650 AAGTGATCCAAGTTAGGCTTAGTGTTTAAGAAGGTGATATTATTGTTATTATTTTTGAACT
* * *
10861743 GTAGGAATAAGACAATGTGGTAAAATTCTTGGTTGATTATTATCATGATAATTTAAATGATAATT
1 GTAGGAATAAGACAATGTGGTAAAATTGTTGGTTGATTATTATCATGATATTTTAAATGATTATT
*
10861808 TTGATTTTAATACTCTTAGGTTCCTAGACGTTGTTATTAGTTTATTGGTTTGGTTGGTTAAAATT
66 TTGATTTTAATACTCTTAGGTTCCTAGACGTTGTTATTAGTTTATTGGTTTGCTTGGTTAAAATT
* * *
10861873 ATTTATATTGCTATGGACTGAGAATATGGACATTTTGATGTTTAATATTGAAGTTATGGATGCAT
131 ATTGATATTGCTATGGAATGAGAATATGGACATTTTGATGTTTAATATTGAAATTAT---TG-AT
* * *
10861938 GTTGAAGTGGTATGTGATTAAGTATGTAGAATGCCCTATTTTGCTTGAATTTTTGCAGAATTATG
192 ATTGAAGTGGTATGTGATTAAGTATGTAGAATGCCCTATTTTGCTGGAATTTTTGCAGAATTATA
* * * *
10862003 CAGAGGTATC-GATAATCAGGGCATATGTATCGATACTTCTGAGTTGAAACAAATGTGTAGGAAA
257 CAGAGGTATCAG-TAATCAGGGCATATGTATCAATACTTCTGAATTGAAACAAATGTGCAAGAAA
* * *
10862067 CAGTTGCTCATTTTGGTATTGATACCAGTTCTCGAGTATCAACACTCGA-GGTAAAAATATAGAT
321 CAGTTGCTCATTTTGCTATCGATACCAGTTCTCGAGTATCAACACT-GAGGGTAAAAATATAAAT
* * * *
10862131 ACTTTTGAATTGTATTGATAAATTGTTGGGTTTTGGATTTTGAAGAAGATTAGAATGTTAAAAAG
385 ACTTTTGAATTGCATCGATAAATTGTTGGGTTTTGGATTTTGAAGAAGATCAGAATGGTAAAAAG
* * *
10862196 GTT-CTGATTTTCCAAACGGTATCGATCCCCATTTTGAGAAATATTGATACCCAATTAGATGTTC
450 GTTCCAG-TTTTCCAAACGGTATCGATACCCATTTTGAGAAATATCGATACCCAATTAGATGTTC
* * * * *
10862260 TCATTTAATGTATGATATCATGTTTATTGTTAGTTTTTTCTTTATCATTCACTGAGCTTGTTTAA
514 TCATATAATGTATGATATCATGTTTATTGGTAGTTTTTTCCTGATCATTCACTAAGCTTGTTTAA
* **
10862325 GCTCACACACTCTTTTCTGAACCTTTGCAGATAGTTAGTGTTTCCGGTGTGGGCGGTGCGGAATT
579 GCTCACACACTCTTTTCTGAACCTTTGCAGATAGTTAGTGTTTCCAGTGTGGGCGGTGCAAAATT
* * * *
10862390 CCAAGAAAGTGATCCTAGTTGGGCTTAGTGTTTGAGAAGGTTATATTATTGTTATTATTTTTGAA
644 CCAAGAAAGTGATCCAAGTTAGGCTTAGTGTTTAAGAAGGTGATATTATTGTTATTATTTTTGAA
*
10862455 TT
709 CT
* *
10862457 GT-GCGAATATGACAATGTGGTAAAATTGTTGGTTGATTATTATCATGATGTTTTAAATGATTAT
1 GTAG-GAATAAGACAATGTGGTAAAATTGTTGGTTGATTATTATCATGATATTTTAAATGATTAT
10862521 TTTGATTTTAATACTCTTAGGTTC
65 TTTGATTTTAATACTCTTAGGTTC
10862545 ATGGATGTTG
Statistics
Matches: 714, Mismatches: 79, Indels: 14
0.88 0.10 0.02
Matches are distributed among these distances:
709 1 0.00
710 167 0.23
713 6 0.01
714 539 0.75
715 1 0.00
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.41
Consensus pattern (710 bp):
GTAGGAATAAGACAATGTGGTAAAATTGTTGGTTGATTATTATCATGATATTTTAAATGATTATT
TTGATTTTAATACTCTTAGGTTCCTAGACGTTGTTATTAGTTTATTGGTTTGCTTGGTTAAAATT
ATTGATATTGCTATGGAATGAGAATATGGACATTTTGATGTTTAATATTGAAATTATTGATATTG
AAGTGGTATGTGATTAAGTATGTAGAATGCCCTATTTTGCTGGAATTTTTGCAGAATTATACAGA
GGTATCAGTAATCAGGGCATATGTATCAATACTTCTGAATTGAAACAAATGTGCAAGAAACAGTT
GCTCATTTTGCTATCGATACCAGTTCTCGAGTATCAACACTGAGGGTAAAAATATAAATACTTTT
GAATTGCATCGATAAATTGTTGGGTTTTGGATTTTGAAGAAGATCAGAATGGTAAAAAGGTTCCA
GTTTTCCAAACGGTATCGATACCCATTTTGAGAAATATCGATACCCAATTAGATGTTCTCATATA
ATGTATGATATCATGTTTATTGGTAGTTTTTTCCTGATCATTCACTAAGCTTGTTTAAGCTCACA
CACTCTTTTCTGAACCTTTGCAGATAGTTAGTGTTTCCAGTGTGGGCGGTGCAAAATTCCAAGAA
AGTGATCCAAGTTAGGCTTAGTGTTTAAGAAGGTGATATTATTGTTATTATTTTTGAACT
Found at i:10863980 original size:15 final size:13
Alignment explanation
Indices: 10863946--10863975 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
10863936 ACCTGGAAGA
10863946 ATATGTGGCATCG
1 ATATGTGGCATCG
10863959 ATATGTGGCATCG
1 ATATGTGGCATCG
10863972 ATAT
1 ATAT
10863976 ATGTGTGCGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (13 bp):
ATATGTGGCATCG
Found at i:10864158 original size:56 final size:56
Alignment explanation
Indices: 10863970--10864136 Score: 271
Period size: 56 Copynumber: 3.0 Consensus size: 56
10863960 TATGTGGCAT
*
10863970 CGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGATTC
1 CGATATATGTGTGCGAGTAAGTCCACGTTTAATACGTTGGCATCAATATGTGATTC
*
10864026 CGATATACGTGTGCGAGTAAGTCCACGTTTAATACGTTGGCATCAATATGTGATTC
1 CGATATATGTGTGCGAGTAAGTCCACGTTTAATACGTTGGCATCAATATGTGATTC
* * * * *
10864082 TGATATATGCGTGTGAGTAAGTCCACGTTTCATACGTTGGCATCGATATGTGATT
1 CGATATATGTGTGCGAGTAAGTCCACGTTTAATACGTTGGCATCAATATGTGATT
10864137 TTGATATGTG
Statistics
Matches: 103, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 103 1.00
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (56 bp):
CGATATATGTGTGCGAGTAAGTCCACGTTTAATACGTTGGCATCAATATGTGATTC
Found at i:10864557 original size:24 final size:24
Alignment explanation
Indices: 10864529--10864577 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
10864519 TATGATGAAT
10864529 TATATTGATACAGGGGTTTAAGTA
1 TATATTGATACAGGGGTTTAAGTA
10864553 TATATTGATACAGGGGTTTAAGTA
1 TATATTGATACAGGGGTTTAAGTA
10864577 T
1 T
10864578 TCAAGTGTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.04, G:0.24, T:0.39
Consensus pattern (24 bp):
TATATTGATACAGGGGTTTAAGTA
Found at i:10867232 original size:26 final size:26
Alignment explanation
Indices: 10867178--10867281 Score: 120
Period size: 27 Copynumber: 3.9 Consensus size: 26
10867168 GCGAGGCTGC
* * *
10867178 CAGAT-TTGTGACGGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
*
10867204 CAGATATTGTGGCAGAGCCACTAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
10867230 CAGATATATGTGGCAGAGCCACCAGAT
1 CAGATAT-TGTGGCAGAGCCACCAGAA
*
10867257 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
10867282 GACGCTTCTT
Statistics
Matches: 68, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
26 13 0.19
27 53 0.78
28 2 0.03
ACGTcount: A:0.33, C:0.21, G:0.26, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:10867720 original size:16 final size:15
Alignment explanation
Indices: 10867699--10867728 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
10867689 AAAATATCGA
10867699 CTTTTCGGCATTTTGG
1 CTTTTCGGC-TTTTGG
10867715 CTTTTCGGCTTTTG
1 CTTTTCGGCTTTTG
10867729 CCAATCTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.03, C:0.20, G:0.23, T:0.53
Consensus pattern (15 bp):
CTTTTCGGCTTTTGG
Found at i:10868936 original size:26 final size:26
Alignment explanation
Indices: 10868905--10869012 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
10868895 TGAAATGCCC
*
10868905 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
10868931 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
10868957 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
10868983 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
10869009 ATCA
1 ATCA
10869013 GTTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:10871291 original size:686 final size:690
Alignment explanation
Indices: 10869423--10872169 Score: 2865
Period size: 713 Copynumber: 3.9 Consensus size: 690
10869413 GGTGTTACAT
* ** * *
10869423 GTTGTTATTAGTTTATTGGTTTGCTTGGTTGAAATTTTTGGTATTGCCATGGACTT-CAAATATA
1 GTTGTTATTAGTTTATTGGTTTGCTTGGTTGAAATTATTAATATTGCTATGGA-TTGCAAATATG
* * * ** *
10869487 GCCATTTTGATATTGAATATTGAAGTTATGGATGCATGTTGAAGTTTTACGTGATTGAGTATGTG
65 GACATTTTGATGTTGAATATTGAAGTTATGGATGCATATTGAAGTGGTATGTGATTGAGTATGTG
* * * * * * **
10869552 GAATGCCATGTTTTGCTGGAATTTTTGTAGAATTATATAGAGGTATTTATAATCAGGGCATACAT
130 GAATGCCCTGTTTTGCTTGAATTTTTGTAGAATTATACAAAGGTATTGATAATCAAGGCATATGT
* * * *
10869617 ATTGATACTTTTGAGTTGAAA-CAATTGTGCAAGAAACAATAGCTCT-TTGTT-GTATCGATACC
195 ATTGATACTTCTGAGTTGAAATGAA-TGTG-AGGAAACAATAGCT-TATT-TTGGTATTGATACC
* *
10869679 AATTCTCGAGTATCGATACTTC-GGGTAAAAATATAGATAATTTTGAATTGTATAGATAAATTG-
256 AATTCTCAAGTATCGATAC-TCAGGGTAAAAATATAGATAATTTTGAATTGTATCGATAAATTGC
* * * * *** * *
10869742 TCGGGTTTGGATTTTGAATAAAAGAAAATTTTTAAAAAGGTATCGATTTTCCAAACT-GTATCAA
320 TAGGTTTTAGATTTTGAAAAAAACTGAA-TGTTAAAAAGGTATTGATTTTCCAAA-TGGTATCAA
* ** * **
10869806 TACCTATTTTGAGAAATATTGATA-CCATTTAGATATTCTCAAGTAATGTATGATATCATGTTTA
383 TACCTATTTTAAGAAATATCAATACCCATTTAGATGTTCTCATTTAATGTATGATATCATGTTTA
* * *
10869870 TTGGTAGTTTTTTCTCGATCATTCACTGAGCTTGTTTAAAGCTTACACGCTCTTTTCTAAACCTT
448 TTGGTAATTTTTT-TCGATCATTCACTGAGCTTGTTT-AAGCTCACACACTC--TT-T-----TT
* * * *
10869935 TGCATATAGTTAGTGTTTCCAGTATGGGCAGTGTG-A-AATTCCAAGGAAGTGGTCCAAGTTAGG
503 T--AGATAG-CA----TT-C--TGTGGGC-G-GTGCAGAATTCCAAGGAAGTGATCCAAGTTAGG
* * * *
10869998 CTTTGTGTTTGAGTAGGTTATATTATTGCTATTATTTTTTAACTGTGGGAATGAGACAATGTGGT
556 CTTAGTGTTTGAGTAGGTGATATTATTGCTATTATTTTTGAACTG-GGGAATAAGACAATGTGGT
* *
10870063 AGAATTT-TTGGTTGGTTATTATCTTGATGTTTTAAATAATTATTTTGATTTTAATACTCTTAGG
620 AG-ATTTGTTGGTTGATTATTATCTTGATGTTTTAAATGATTATTTTGA--TTAATACTCTTAGG
*
10870127 TTCATGGAC
682 TTCCTGGAC
* * * * *
10870136 GTTGTTATTAGTTCATTGGTTTGCTTGGTTGAAATTTTTGATATTGCTATGGACTGCAAATATAG
1 GTTGTTATTAGTTTATTGGTTTGCTTGGTTGAAATTATTAATATTGCTATGGATTGCAAATATGG
*
10870201 ACATTTTGATGTTGAATATTGAAGTTATGGATGCATATTGAAGTGGTATGTGATTGAGTTTGTGG
66 ACATTTTGATGTTGAATATTGAAGTTATGGATGCATATTGAAGTGGTATGTGATTGAGTATGTGG
* ** * * * *
10870266 AATTCTATGTTTTGCTGGAATTTTTGCATAATTATACAAAGGTATTGATAATCACGGCATATGTA
131 AATGCCCTGTTTTGCTTGAATTTTTGTAGAATTATACAAAGGTATTGATAATCAAGGCATATGTA
* * * * * *
10870331 TTGATACTTTTGAGTTAAAATGAATGTGCAGGAAATAGTAGCTCATTTTGGTATTGATACCAGTT
196 TTGATACTTCTGAGTTGAAATGAATGTG-AGGAAACAATAGCTTATTTTGGTATTGATACCAATT
* * * * * *
10870396 CTCAAGTATCGCTACTCGGGGTAAAAATATACATACTTTTGAATTGTATCGATAAATTGTTGGGT
260 CTCAAGTATCGATACTCAGGGTAAAAATATAGATAATTTTGAATTGTATCGATAAATTGCTAGGT
* * * * ** * *
10870461 TTTGGATTTTGAAGAAGATTAGAATGTTAAAAAGGT-TTCGATTTTTGAAACT-GCAT-TATACC
325 TTTAGATTTTGAAAAAAACT-GAATGTTAAAAAGGTATT-GATTTTCCAAA-TGGTATCAATACC
* ** * * * *
10870523 CATTTTGGGAAATATCGATTCCCATTTAGATGTTCTCATTTAATGTATGATATTATGTTTATCGG
387 TATTTTAAGAAATATCAATACCCATTTAGATGTTCTCATTTAATGTATGATATCATGTTTATTGG
* * *
10870588 TAGTTTTTTCCCGATCATTCACTGAGCTTGTTTAAGCTCACAAACTCTTTTTT-GA-A-CA-T-T
452 TAATTTTTT-TCGATCATTCACTGAGCTTGTTTAAGCTCACACACTCTTTTTTAGATAGCATTCT
*
10870648 -TGGGCGGTG-AGGAATTCCAAGGAAGTGATCCAAGTTAGGCTTAGTGTTTGAGTAGGTGATTTT
516 GTGGGCGGTGCA-GAATTCCAAGGAAGTGATCCAAGTTAGGCTTAGTGTTTGAGTAGGTGATATT
* *
10870711 ATTGCTATTATTTTTGAACTGGAGGAATAAGACAATATGGTAGATTTGTTGGTTGATTATTGT-T
580 ATTGCTATTATTTTTGAACTGG-GGAATAAGACAATGTGGTAGATTTGTTGGTTGATTATTATCT
* * * *
10870775 ATGATGTTTTAAATGATTATTTTGA-TATTACTCTTAAGTTCCTAGAG
644 -TGATGTTTTAAATGATTATTTTGATTAATACTCTTAGGTTCCTGGAC
*
10870822 GTTGTTATTAGTTTATTGTTTTGCTTGGTTGAAATTATTAATATTGCTATGGATTGCAAATATGG
1 GTTGTTATTAGTTTATTGGTTTGCTTGGTTGAAATTATTAATATTGCTATGGATTGCAAATATGG
* * * * * **
10870887 AAATTTTGATGTTGATTATTGAAGTTATGGATGCATTTTGAAGTGGTGTATGATTGAGTCGGTGG
66 ACATTTTGATGTTGAATATTGAAGTTATGGATGCATATTGAAGTGGTATGTGATTGAGTATGTGG
* * * * *
10870952 AATGCCCTGTTTTGCTTGAATTTTTGTAGAATTATATAGAGCTATCGATAAACAAGGCATATGTA
131 AATGCCCTGTTTTGCTTGAATTTTTGTAGAATTATACAAAGGTATTGATAATCAAGGCATATGTA
* * *
10871017 TCGATACTTCTGAGTTGGAATGAATGTGTAGGAAACAATTGCTTATTTTGGTATTGATACCAATT
196 TTGATACTTCTGAGTTGAAATGAATGTG-AGGAAACAATAGCTTATTTTGGTATTGATACCAATT
* * * *
10871082 CTCGAGTATCGATACTCAGGTTAAAAATTTAGATAATTTTGAATTGTATCAATAAATTGCTAGGT
260 CTCAAGTATCGATACTCAGGGTAAAAATATAGATAATTTTGAATTGTATCGATAAATTGCTAGGT
*
10871147 TTTAGATTTTGAAATAAAACTGAATGTTAAAAAGGTATTTATTTTCCAAATGGTATCAATACCTA
325 TTTAGATTTTGAAA-AAAACTGAATGTTAAAAAGGTATTGATTTTCCAAATGGTATCAATACCTA
* * * * *
10871212 TTTTCAGAAATATTAATACCCATTTAGTTGTTCTCATGTAATGTATGATATCATGTTTATTAGTA
389 TTTTAAGAAATATCAATACCCATTTAGATGTTCTCATTTAATGTATGATATCATGTTTATTGGTA
10871277 ATTTTTTTCGATCATTCACTGAGCTTGTTTAAGCTCACACACTCTTTTCTAAACCTTTGCAGATA
454 ATTTTTTTCGATCATTCACTGAGCTTGTTTAAGCTCACACACTC--TT-T-----TTT--AGATA
* * *
10871342 GTTAGTGTTTCCGGTGTGGGCGGTGCAGAATTCC-AGTGAACTGATCCAAGTTAGGCTTAGTATT
509 G-CA----TT-C--TGTGGGCGGTGCAGAATTCCAAG-GAAGTGATCCAAGTTAGGCTTAGTGTT
* * * * *
10871406 TGAGTAGGTGATATCATTACTATTATTTTTGAACTTTGGGAATAAGACAATGTGGTTGAATTGTT
565 TGAGTAGGTGATATTATTGCTATTATTTTTGAAC-TGGGGAATAAGACAATGTGGTAGATTTGTT
* * *
10871471 GGTTGATTATTATCTTAATGTTTTAAGTGATTATTTTGATTTTAATACTCATAGGTTCGC-GGAC
629 GGTTGATTATTATCTTGATGTTTTAAATGATTATTTTGA--TTAATACTCTTAGGTTC-CTGGAC
* *
10871535 GTTGTTATTAGTTTATTGGTTTGCTTGGTTGAAATTATTCATATTGCTATAGACTT-CAAATATG
1 GTTGTTATTAGTTTATTGGTTTGCTTGGTTGAAATTATTAATATTGCTATGGA-TTGCAAATATG
* * *
10871599 GACATTTTGATGTTGAATATTGAAGTTATGGATGCATGTTGAAGTGGTATGTGATTCAGTATGCG
65 GACATTTTGATGTTGAATATTGAAGTTATGGATGCATATTGAAGTGGTATGTGATTGAGTATGTG
* * * * *
10871664 GATTGCCCTGTTTTCCTTGAATTTTTGTAGAATTATACAAAGGTTTTGGTAATCGAGGCATATGT
130 GAATGCCCTGTTTTGCTTGAATTTTTGTAGAATTATACAAAGGTATTGATAATCAAGGCATATGT
* ** * * *
10871729 ATTGATACTTCTAAGTTGAAACCAATTTGCGTGAAACAATAG-TTCATTTTGGTATTGATACCAT
195 ATTGATACTTCTGAGTTGAAATGAATGTGAG-GAAACAATAGCTT-ATTTTGGTATTGATACCAA
* * * *
10871793 TTCTCAAGTATGGATACTCAGGGTAAAAATATGGATAGTTTTGAATTGTATCGATAAATTGCTAA
258 TTCTCAAGTATCGATACTCAGGGTAAAAATATAGATAATTTTGAATTGTATCGATAAATTGCTAG
* * ** * *
10871858 GTTTTAGATTTTGAAGAAAAACAGAATGTT-AAAATGTACCGATTTTCCAAACGGTATCGATACC
323 GTTTTAGATTTTGAA-AAAAACTGAATGTTAAAAAGGTATTGATTTTCCAAATGGTATCAATACC
* * *
10871922 TATTTTAAGAAATATCAATACCTATTTAGATGTTCTCATTTAATGTACT-ATATCTTATTTATTG
387 TATTTTAAGAAATATCAATACCCATTTAGATGTTCTCATTTAATGTA-TGATATCATGTTTATTG
* *
10871986 GT-ATTTTTTTCCTGATCATTCACTGAGCTTTTTTAAACTCACACACTCTTTTCTAAACCTTTGC
451 GTAATTTTTTT-C-GATCATTCACTGAGCTTGTTTAAGCTCACACACTC--TT-T-----TTT--
* * *
10872050 AGATAGTAAGTGCTCCGGTGTAGGCGGTGCGGAATTCCAAGGAAGTGATCCAAGTTAGGCTTAGT
504 AGATAG-CA-T--T-C--TGTGGGCGGTGCAGAATTCCAAGGAAGTGATCCAAGTTAGGCTTAGT
10872115 GTTTGAGTAGGTGATATTATTGCTATTATTTTTGAAGTCT-GGGAATAAGACAATG
562 GTTTGAGTAGGTGATATTATTGCTATTATTTTTGAA--CTGGGGAATAAGACAATG
10872170 CTATTATTTT
Statistics
Matches: 1745, Mismatches: 227, Indels: 125
0.83 0.11 0.06
Matches are distributed among these distances:
685 1 0.00
686 370 0.21
687 77 0.04
688 9 0.01
689 127 0.07
690 1 0.00
694 4 0.00
697 2 0.00
698 1 0.00
699 1 0.00
700 1 0.00
701 1 0.00
702 1 0.00
705 4 0.00
709 3 0.00
710 132 0.08
711 14 0.01
712 187 0.11
713 685 0.39
714 122 0.07
715 2 0.00
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.41
Consensus pattern (690 bp):
GTTGTTATTAGTTTATTGGTTTGCTTGGTTGAAATTATTAATATTGCTATGGATTGCAAATATGG
ACATTTTGATGTTGAATATTGAAGTTATGGATGCATATTGAAGTGGTATGTGATTGAGTATGTGG
AATGCCCTGTTTTGCTTGAATTTTTGTAGAATTATACAAAGGTATTGATAATCAAGGCATATGTA
TTGATACTTCTGAGTTGAAATGAATGTGAGGAAACAATAGCTTATTTTGGTATTGATACCAATTC
TCAAGTATCGATACTCAGGGTAAAAATATAGATAATTTTGAATTGTATCGATAAATTGCTAGGTT
TTAGATTTTGAAAAAAACTGAATGTTAAAAAGGTATTGATTTTCCAAATGGTATCAATACCTATT
TTAAGAAATATCAATACCCATTTAGATGTTCTCATTTAATGTATGATATCATGTTTATTGGTAAT
TTTTTTCGATCATTCACTGAGCTTGTTTAAGCTCACACACTCTTTTTTAGATAGCATTCTGTGGG
CGGTGCAGAATTCCAAGGAAGTGATCCAAGTTAGGCTTAGTGTTTGAGTAGGTGATATTATTGCT
ATTATTTTTGAACTGGGGAATAAGACAATGTGGTAGATTTGTTGGTTGATTATTATCTTGATGTT
TTAAATGATTATTTTGATTAATACTCTTAGGTTCCTGGAC
Found at i:10872172 original size:33 final size:33
Alignment explanation
Indices: 10872135--10872202 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
10872125 GTGATATTAT
10872135 TGCTATTATTTTTGAAGTCTGGGAATAAGACAA
1 TGCTATTATTTTTGAAGTCTGGGAATAAGACAA
10872168 TGCTATTATTTTTGAAGTCTGGGAATAAGACAA
1 TGCTATTATTTTTGAAGTCTGGGAATAAGACAA
10872201 TG
1 TG
10872203 TGATTGAATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.32, C:0.09, G:0.22, T:0.37
Consensus pattern (33 bp):
TGCTATTATTTTTGAAGTCTGGGAATAAGACAA
Found at i:10872684 original size:23 final size:26
Alignment explanation
Indices: 10872630--10872685 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 26
10872620 AAGAAATCAT
10872630 TTAT-ATAATAAGGTTAAATATATAA
1 TTATAATAATAAGGTTAAATATATAA
*
10872655 TTA-AATAATAA-GTT-AATATAT-G
1 TTATAATAATAAGGTTAAATATATAA
10872677 TTATAATAA
1 TTATAATAA
10872686 AACATAAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
22 3 0.11
23 12 0.43
24 3 0.11
25 10 0.36
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (26 bp):
TTATAATAATAAGGTTAAATATATAA
Found at i:10877822 original size:16 final size:16
Alignment explanation
Indices: 10877801--10877853 Score: 51
Period size: 16 Copynumber: 3.5 Consensus size: 16
10877791 CTTTGGTAAA
10877801 GCAATATGTATATTCG
1 GCAATATGTATATTCG
*
10877817 GCAATATGGTA-A---A
1 GCAATAT-GTATATTCG
*
10877830 ACAATATGTATATTCG
1 GCAATATGTATATTCG
10877846 GCAATATG
1 GCAATATG
10877854 ATAAGTGTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 10
0.67 0.10 0.24
Matches are distributed among these distances:
12 3 0.11
13 7 0.25
16 15 0.54
17 3 0.11
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (16 bp):
GCAATATGTATATTCG
Found at i:10877836 original size:29 final size:29
Alignment explanation
Indices: 10877794--10877853 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
10877784 TGTGATACTT
*
10877794 TGGTAAAGCAATATGTATATTCGGCAATA
1 TGGTAAAACAATATGTATATTCGGCAATA
10877823 TGGTAAAACAATATGTATATTCGGCAATA
1 TGGTAAAACAATATGTATATTCGGCAATA
10877852 TG
1 TG
10877854 ATAAGTGTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.38, C:0.10, G:0.20, T:0.32
Consensus pattern (29 bp):
TGGTAAAACAATATGTATATTCGGCAATA
Found at i:10878259 original size:42 final size:42
Alignment explanation
Indices: 10878212--10878296 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
10878202 AAAGTCCACC
10878212 ACACTATCGACTGTCCTCGGTATCTTTATAAGTGAACTTTCG
1 ACACTATCGACTGTCCTCGGTATCTTTATAAGTGAACTTTCG
10878254 ACACTATCGACTGTCCTCGGTATCTTTATAAGTGAACTTTCG
1 ACACTATCGACTGTCCTCGGTATCTTTATAAGTGAACTTTCG
10878296 A
1 A
10878297 ATCTATGGCA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (42 bp):
ACACTATCGACTGTCCTCGGTATCTTTATAAGTGAACTTTCG
Found at i:10880113 original size:20 final size:20
Alignment explanation
Indices: 10880090--10880212 Score: 61
Period size: 20 Copynumber: 6.2 Consensus size: 20
10880080 CCTTGTATTG
* *
10880090 TTTTGTATTTCCTTATAATT
1 TTTTGTAATTCCTCATAATT
* * *
10880110 TTTTATAATTACTCATATTT
1 TTTTGTAATTCCTCATAATT
* *
10880130 TTTTGTACTTCCTCAT-GTT
1 TTTTGTAATTCCTCATAATT
* * * **
10880149 TTTAGTACTTGCT-ACGATT
1 TTTTGTAATTCCTCATAATT
* * * *
10880168 TTTGGCACTTCATCATAATT
1 TTTTGTAATTCCTCATAATT
* *
10880188 TTTTCTATTTCCTCATAATAT
1 TTTTGTAATTCCTCATAAT-T
10880209 TTTT
1 TTTT
10880213 ATATTTCCTA
Statistics
Matches: 76, Mismatches: 24, Indels: 5
0.72 0.23 0.05
Matches are distributed among these distances:
18 1 0.01
19 24 0.32
20 46 0.61
21 5 0.07
ACGTcount: A:0.21, C:0.15, G:0.07, T:0.57
Consensus pattern (20 bp):
TTTTGTAATTCCTCATAATT
Found at i:10880211 original size:21 final size:20
Alignment explanation
Indices: 10880180--10880221 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 20
10880170 TGGCACTTCA
*
10880180 TCATAATTTTTTCTATTTCC
1 TCATAATTTTTTATATTTCC
10880200 TCATAATATTTTTATATTTCC
1 TCATAAT-TTTTTATATTTCC
10880221 T
1 T
10880222 ATTTTCTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.24, C:0.17, G:0.00, T:0.60
Consensus pattern (20 bp):
TCATAATTTTTTATATTTCC
Found at i:10880341 original size:40 final size:39
Alignment explanation
Indices: 10880296--10880394 Score: 94
Period size: 40 Copynumber: 2.5 Consensus size: 39
10880286 TGCTCGGGTT
10880296 TTTTTGGTATTTTCTCATTTCTTTTT-GTA-TTCCCTCATAA
1 TTTTTGGTATTTTCTCATTT-TTTTTGGTACTT-CCTCAT-A
** ** * *
10880336 TTTTTGGTGGTTAGTCATTTTTTTTGGTACTTTCTTATA
1 TTTTTGGTATTTTCTCATTTTTTTTGGTACTTCCTCATA
*
10880375 TTTTTTGTATTTTCTCATTT
1 TTTTTGGTATTTTCTCATTT
10880395 AGTACTTCCA
Statistics
Matches: 46, Mismatches: 11, Indels: 5
0.74 0.18 0.08
Matches are distributed among these distances:
39 21 0.46
40 23 0.50
41 2 0.04
ACGTcount: A:0.13, C:0.12, G:0.11, T:0.64
Consensus pattern (39 bp):
TTTTTGGTATTTTCTCATTTTTTTTGGTACTTCCTCATA
Found at i:10880821 original size:21 final size:22
Alignment explanation
Indices: 10880792--10880832 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
10880782 ACATATGAGA
*
10880792 AATACCAAAAA-CTATGAGGTG
1 AATACCAAAAATCCATGAGGTG
*
10880813 AATATCAAAAATCCATGAGG
1 AATACCAAAAATCCATGAGG
10880833 GAGTTGTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.20
Consensus pattern (22 bp):
AATACCAAAAATCCATGAGGTG
Found at i:10880963 original size:20 final size:18
Alignment explanation
Indices: 10880917--10880964 Score: 51
Period size: 20 Copynumber: 2.5 Consensus size: 18
10880907 TTATTTGTAG
*
10880917 ATATAAAAAATTTTATTA
1 ATATCAAAAATTTTATTA
*
10880935 ATATGCAAAAATATTTATTTT
1 ATAT-CAAAAAT-TTTA-TTA
10880956 ATATCAAAA
1 ATATCAAAA
10880965 TTTGATTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
18 4 0.16
19 6 0.24
20 9 0.36
21 6 0.24
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (18 bp):
ATATCAAAAATTTTATTA
Found at i:10880964 original size:19 final size:20
Alignment explanation
Indices: 10880942--10880993 Score: 56
Period size: 19 Copynumber: 2.7 Consensus size: 20
10880932 TTAATATGCA
10880942 AAAATATTTATTTTATA-TC
1 AAAATATTTATTTTATAGTC
* *
10880961 AAAAT-TTGATTTTTCTAGTC
1 AAAATATTTA-TTTTATAGTC
10880981 AAAA-ATTTATTTT
1 AAAATATTTATTTT
10880994 CAAATCATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
18 3 0.11
19 15 0.56
20 9 0.33
ACGTcount: A:0.38, C:0.06, G:0.04, T:0.52
Consensus pattern (20 bp):
AAAATATTTATTTTATAGTC
Found at i:10881056 original size:10 final size:10
Alignment explanation
Indices: 10881025--10881073 Score: 55
Period size: 10 Copynumber: 4.9 Consensus size: 10
10881015 ATCGCATAAA
*
10881025 AAAAATTATG
1 AAAAATTATT
10881035 AGAAAA-TATT
1 A-AAAATTATT
10881045 AAAAATTATT
1 AAAAATTATT
*
10881055 AAAAATTACT
1 AAAAATTATT
*
10881065 AATAATTAT
1 AAAAATTAT
10881074 GGGGTGTATC
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
9 4 0.12
10 25 0.76
11 4 0.12
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (10 bp):
AAAAATTATT
Found at i:10881153 original size:16 final size:16
Alignment explanation
Indices: 10881132--10881171 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
10881122 ATTGTTTTAC
*
10881132 CTATTTATCAGATAAA
1 CTATTTACCAGATAAA
10881148 CTATTTACCAGATAAA
1 CTATTTACCAGATAAA
10881164 CTATTTAC
1 CTATTTAC
10881172 AATTACAGGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.40, C:0.17, G:0.05, T:0.38
Consensus pattern (16 bp):
CTATTTACCAGATAAA
Found at i:10890778 original size:25 final size:25
Alignment explanation
Indices: 10890749--10890799 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
10890739 CAAAGGAAAA
** *
10890749 TCCTAATCTAATTCTTAATTTAAAG
1 TCCTAATAGAATTCCTAATTTAAAG
10890774 TCCTAATAGAATTCCTAATTTAAAG
1 TCCTAATAGAATTCCTAATTTAAAG
10890799 T
1 T
10890800 TTATAAGGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.37, C:0.16, G:0.06, T:0.41
Consensus pattern (25 bp):
TCCTAATAGAATTCCTAATTTAAAG
Found at i:10894825 original size:28 final size:28
Alignment explanation
Indices: 10894785--10894838 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
10894775 TCTATATCAG
* *
10894785 TCAATATCTTTCAATATCAATCAATTTA
1 TCAATATCGTTCAATAACAATCAATTTA
10894813 TCAATATCGTTCAATAACAATCAATT
1 TCAATATCGTTCAATAACAATCAATT
10894839 ATTCTTTAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.41, C:0.19, G:0.02, T:0.39
Consensus pattern (28 bp):
TCAATATCGTTCAATAACAATCAATTTA
Found at i:10895022 original size:18 final size:18
Alignment explanation
Indices: 10894999--10895094 Score: 84
Period size: 18 Copynumber: 5.3 Consensus size: 18
10894989 CGGTCAGTCA
*
10894999 TCAGTATTAATCAGTTAT
1 TCAGTAATAATCAGTTAT
* *
10895017 TCAGTAATAGTCATTTAT
1 TCAGTAATAATCAGTTAT
* * *
10895035 TCAGTAACAGTCATTTAT
1 TCAGTAATAATCAGTTAT
* * * * *
10895053 TTAGTAACAGTTAATTAT
1 TCAGTAATAATCAGTTAT
*
10895071 TCAGTAATAGTCAGTTAT
1 TCAGTAATAATCAGTTAT
10895089 TCAGTA
1 TCAGTA
10895095 CCTTTATTTT
Statistics
Matches: 67, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 67 1.00
ACGTcount: A:0.34, C:0.11, G:0.12, T:0.42
Consensus pattern (18 bp):
TCAGTAATAATCAGTTAT
Found at i:10895039 original size:36 final size:36
Alignment explanation
Indices: 10894999--10895094 Score: 120
Period size: 36 Copynumber: 2.7 Consensus size: 36
10894989 CGGTCAGTCA
* * * *
10894999 TCAGTATTAATCAGTTATTCAGTAATAGTCATTTAT
1 TCAGTAATAGTCAGTTATTCAGTAACAGTCAATTAT
* * * *
10895035 TCAGTAACAGTCATTTATTTAGTAACAGTTAATTAT
1 TCAGTAATAGTCAGTTATTCAGTAACAGTCAATTAT
10895071 TCAGTAATAGTCAGTTATTCAGTA
1 TCAGTAATAGTCAGTTATTCAGTA
10895095 CCTTTATTTT
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 49 1.00
ACGTcount: A:0.34, C:0.11, G:0.12, T:0.42
Consensus pattern (36 bp):
TCAGTAATAGTCAGTTATTCAGTAACAGTCAATTAT
Found at i:10895305 original size:51 final size:52
Alignment explanation
Indices: 10895211--10895328 Score: 150
Period size: 51 Copynumber: 2.2 Consensus size: 52
10895201 CCGTAACGGT
* * *
10895211 AACAGTAACAGTAACAGTAGCGGTACACAGAGTACCTCATCGGAACAAATTCGG
1 AACAGTAACAGTAACAATA-CGGTA-ACAGAGTACCTCATCGGAACAAATCCGA
* *
10895265 AACAGTAACAGTAACAAT-CAGGT-ACAGAGTACCTCTTCGGAACGAATCCGA
1 AACAGTAACAGTAACAATAC-GGTAACAGAGTACCTCATCGGAACAAATCCGA
10895316 AACAGTAACAGTA
1 AACAGTAACAGTA
10895329 GTCGACACTT
Statistics
Matches: 58, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
51 37 0.64
52 1 0.02
53 3 0.05
54 17 0.29
ACGTcount: A:0.41, C:0.22, G:0.20, T:0.17
Consensus pattern (52 bp):
AACAGTAACAGTAACAATACGGTAACAGAGTACCTCATCGGAACAAATCCGA
Found at i:10895474 original size:17 final size:18
Alignment explanation
Indices: 10895438--10895474 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
10895428 TAATAGGGTT
10895438 TTCAGTTCACTTTCTTAA
1 TTCAGTTCACTTTCTTAA
10895456 TTCAGTATCA-TTT-TTAA
1 TTCAGT-TCACTTTCTTAA
10895473 TT
1 TT
10895475 TATTTACAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.33
18 9 0.50
19 3 0.17
ACGTcount: A:0.24, C:0.16, G:0.05, T:0.54
Consensus pattern (18 bp):
TTCAGTTCACTTTCTTAA
Found at i:10895631 original size:19 final size:19
Alignment explanation
Indices: 10895609--10895646 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
10895599 TATCCAATTC
*
10895609 CCACATCAA-TCACATAAAT
1 CCACATAAATTCA-ATAAAT
10895628 CCACATAAATTCAATAAAT
1 CCACATAAATTCAATAAAT
10895647 TATTCATACC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 14 0.82
20 3 0.18
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (19 bp):
CCACATAAATTCAATAAAT
Found at i:10895957 original size:19 final size:20
Alignment explanation
Indices: 10895928--10895967 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
10895918 TCGTTTCATG
10895928 TTCTGTTCTTTCTA-TTCTTT
1 TTCTGTTCTTT-TATTTCTTT
10895948 TTCT-TTCTTTTATTTCTTT
1 TTCTGTTCTTTTATTTCTTT
10895967 T
1 T
10895968 GTTTCTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 2 0.11
19 13 0.68
20 4 0.21
ACGTcount: A:0.05, C:0.17, G:0.03, T:0.75
Consensus pattern (20 bp):
TTCTGTTCTTTTATTTCTTT
Found at i:10895967 original size:18 final size:18
Alignment explanation
Indices: 10895928--10895976 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 18
10895918 TCGTTTCATG
10895928 TTCTGTTCTTTCTATTCTTT
1 TTCT-TTCTTT-TATTCTTT
10895948 TTCTTTCTTTTATT-TCTT
1 TTCTTTCTTTTATTCT-TT
*
10895966 TTGTTTCTTTT
1 TTCTTTCTTTT
10895977 TTTAACTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
17 1 0.04
18 16 0.59
19 6 0.22
20 4 0.15
ACGTcount: A:0.04, C:0.16, G:0.04, T:0.76
Consensus pattern (18 bp):
TTCTTTCTTTTATTCTTT
Found at i:10896107 original size:15 final size:14
Alignment explanation
Indices: 10896084--10896122 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
10896074 ACACTTGTCT
10896084 TTTATTTATTATAC
1 TTTATTTATTATAC
*
10896098 TTTATATTATTATAT
1 TTTAT-TTATTATAC
10896113 TATTATTTAT
1 T-TTATTTAT
10896123 AATTATTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 5 0.23
15 13 0.59
16 4 0.18
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (14 bp):
TTTATTTATTATAC
Found at i:10900025 original size:22 final size:22
Alignment explanation
Indices: 10899997--10900042 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
10899987 GTTTGTGTGT
*
10899997 CTAGTTTAACATGCCCGTGCGG
1 CTAGTTTAACATGCCCGTACGG
*
10900019 CTAGTTTAACATGTCCGTACGG
1 CTAGTTTAACATGCCCGTACGG
10900041 CT
1 CT
10900043 TGGGACACGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.20, C:0.26, G:0.24, T:0.30
Consensus pattern (22 bp):
CTAGTTTAACATGCCCGTACGG
Found at i:10900936 original size:18 final size:18
Alignment explanation
Indices: 10900901--10901014 Score: 129
Period size: 18 Copynumber: 6.3 Consensus size: 18
10900891 CAGTCAGTCA
* * *
10900901 TCAGTATTAATCAGTTAT
1 TCAGTAATAGTCATTTAT
*
10900919 TTAGTAATAGTCATTTAT
1 TCAGTAATAGTCATTTAT
10900937 TCAGTAATAGTCATTTAT
1 TCAGTAATAGTCATTTAT
*
10900955 TCAGTAACAGTCATTTAT
1 TCAGTAATAGTCATTTAT
* * *
10900973 TCAGTAACAGTTAATTAT
1 TCAGTAATAGTCATTTAT
** *
10900991 TCAGTAGCAGTCAGTTAT
1 TCAGTAATAGTCATTTAT
10901009 TCAGTA
1 TCAGTA
10901015 CCTTTATTTT
Statistics
Matches: 85, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 85 1.00
ACGTcount: A:0.33, C:0.12, G:0.13, T:0.41
Consensus pattern (18 bp):
TCAGTAATAGTCATTTAT
Found at i:10901132 original size:6 final size:6
Alignment explanation
Indices: 10901123--10901167 Score: 72
Period size: 6 Copynumber: 7.5 Consensus size: 6
10901113 GGAATACACC
* *
10901123 GTAACG GTAACA GTAACA GTAACA GTAACA GTAACA GTAATA GTA
1 GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA GTA
10901168 GCGGTACACA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.47, C:0.13, G:0.20, T:0.20
Consensus pattern (6 bp):
GTAACA
Found at i:10901213 original size:54 final size:51
Alignment explanation
Indices: 10901149--10901266 Score: 132
Period size: 51 Copynumber: 2.3 Consensus size: 51
10901139 CAGTAACAGT
* *
10901149 AACAGTAACAGTAATAGTAGC-GGTACACAGAGTACCTCATCGGAACA-AATTCGG
1 AACAGTAACAGTAACA--AGCAGGT--ACAGAATACCTCATCGGAA-AGAATTCGG
* *
10901203 AACAGTAACAGTAACAATCAGGTACAGAATACCTCTTCGGAAAGAATTCGG
1 AACAGTAACAGTAACAAGCAGGTACAGAATACCTCATCGGAAAGAATTCGG
*
10901254 AATAGTAACAGTA
1 AACAGTAACAGTA
10901267 GTCGACACTT
Statistics
Matches: 57, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
50 1 0.02
51 36 0.63
52 2 0.04
53 3 0.05
54 15 0.26
ACGTcount: A:0.42, C:0.19, G:0.20, T:0.19
Consensus pattern (51 bp):
AACAGTAACAGTAACAAGCAGGTACAGAATACCTCATCGGAAAGAATTCGG
Found at i:10901570 original size:19 final size:19
Alignment explanation
Indices: 10901548--10901585 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
10901538 TATTCAATTC
*
10901548 CCACATCAA-TCACATAAAT
1 CCACATAAATTCA-ATAAAT
10901567 CCACATAAATTCAATAAAT
1 CCACATAAATTCAATAAAT
10901586 TATTTATACC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 14 0.82
20 3 0.18
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (19 bp):
CCACATAAATTCAATAAAT
Found at i:10901895 original size:18 final size:18
Alignment explanation
Indices: 10901867--10901917 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
10901857 TCGTTTCATG
*
10901867 TTCTGTTCTTTCTA-TTCTT
1 TTCT-TTCTTT-TATTTCCT
10901886 TTCTTTCTTTTATTTCCT
1 TTCTTTCTTTTATTTCCT
*
10901904 TTGTTTC-TTTATTT
1 TTCTTTCTTTTATTT
10901918 AACTATTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 9 0.31
18 16 0.55
19 4 0.14
ACGTcount: A:0.06, C:0.18, G:0.04, T:0.73
Consensus pattern (18 bp):
TTCTTTCTTTTATTTCCT
Found at i:10901982 original size:19 final size:19
Alignment explanation
Indices: 10901958--10901996 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
10901948 AATACTTATT
*
10901958 TATTATTTA-TACATGTGTA
1 TATTA-TTAGTACATATGTA
10901977 TATTATTAGTACATATGTA
1 TATTATTAGTACATATGTA
10901996 T
1 T
10901997 CTATATAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 3 0.17
19 15 0.83
ACGTcount: A:0.33, C:0.05, G:0.10, T:0.51
Consensus pattern (19 bp):
TATTATTAGTACATATGTA
Found at i:10902044 original size:15 final size:14
Alignment explanation
Indices: 10902021--10902059 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
10902011 ACACTTGTCT
10902021 TTTATTTATTATAC
1 TTTATTTATTATAC
*
10902035 TTTATATTATTATATT
1 TTTAT-TTATTATA-C
10902051 TTTATTTAT
1 TTTATTTAT
10902060 AATTATTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 5 0.23
15 12 0.55
16 5 0.23
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTATTTATTATAC
Found at i:10904156 original size:44 final size:44
Alignment explanation
Indices: 10904106--10904193 Score: 151
Period size: 44 Copynumber: 2.0 Consensus size: 44
10904096 CATCTTTGCA
*
10904106 CATTGCTGAAATTCTCTGTTCT-CCTCTTCATTTTTGTTTTTTTC
1 CATTGCTGAAATTCTCTGTTCTCCCTCTTCATTTTT-TTTCTTTC
10904150 CATTGCTGAAATTCTCTGTTCTCCCTCTTCATTTTTTTTCTTTC
1 CATTGCTGAAATTCTCTGTTCTCCCTCTTCATTTTTTTTCTTTC
10904194 ACTCTTGTCA
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
44 29 0.69
45 13 0.31
ACGTcount: A:0.11, C:0.25, G:0.08, T:0.56
Consensus pattern (44 bp):
CATTGCTGAAATTCTCTGTTCTCCCTCTTCATTTTTTTTCTTTC
Found at i:10911367 original size:18 final size:18
Alignment explanation
Indices: 10911302--10911396 Score: 75
Period size: 18 Copynumber: 5.3 Consensus size: 18
10911292 TAACAATATC
*
10911302 ATTCAGTAAC-GATCATTT
1 ATTCAGTAACAG-TCAGTT
* * * *
10911320 ATTCAGTAATAATTAGTC
1 ATTCAGTAACAGTCAGTT
* *
10911338 ATTTAGTAACAGTCATTT
1 ATTCAGTAACAGTCAGTT
* *
10911356 ATTCAGTAACAGTTAATT
1 ATTCAGTAACAGTCAGTT
* *
10911374 ATTCAATAGCAGTCAGTT
1 ATTCAGTAACAGTCAGTT
10911392 ATTCA
1 ATTCA
10911397 ATACCTTTAT
Statistics
Matches: 58, Mismatches: 18, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
18 58 1.00
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.39
Consensus pattern (18 bp):
ATTCAGTAACAGTCAGTT
Found at i:10911387 original size:36 final size:36
Alignment explanation
Indices: 10911292--10911396 Score: 99
Period size: 36 Copynumber: 3.0 Consensus size: 36
10911282 TTAATCACTT
*
10911292 TAACAA-T-ATCATTCAGTAAC-GATCATTTATTCAG
1 TAACAATTAATCATTCAATAACAG-TCATTTATTCAG
* * * *
10911326 TAATAATTAGTCATTTAGTAACAGTCATTTATTCAG
1 TAACAATTAATCATTCAATAACAGTCATTTATTCAG
* * * *
10911362 TAACAGTTAATTATTCAATAGCAGTCAGTTATTCA
1 TAACAATTAATCATTCAATAACAGTCATTTATTCA
10911397 ATACCTTTAT
Statistics
Matches: 57, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
34 5 0.09
35 1 0.02
36 50 0.88
37 1 0.02
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.38
Consensus pattern (36 bp):
TAACAATTAATCATTCAATAACAGTCATTTATTCAG
Found at i:10912920 original size:13 final size:15
Alignment explanation
Indices: 10912894--10912926 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
10912884 CATTTACTTT
10912894 ATATATATTATAATA
1 ATATATATTATAATA
10912909 ATATA-ATT-TAATA
1 ATATATATTATAATA
10912922 ATATA
1 ATATA
10912927 CTTATCTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 10 0.56
14 3 0.17
15 5 0.28
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
ATATATATTATAATA
Found at i:10913075 original size:14 final size:15
Alignment explanation
Indices: 10913043--10913088 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
10913033 ACTTTATTTA
10913043 ATTAATATAAAATAAT
1 ATTAATAT-AAATAAT
10913059 ATTAATAT-AATAAT
1 ATTAATATAAATAAT
*
10913073 ATTTACT-TAAATAAT
1 A-TTAATATAAATAAT
10913088 A
1 A
10913089 AGTAAATACA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
14 8 0.30
15 11 0.41
16 8 0.30
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (15 bp):
ATTAATATAAATAAT
Found at i:10913420 original size:17 final size:18
Alignment explanation
Indices: 10913398--10913432 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
10913388 GAATTGGGCC
10913398 GTGTGGG-CCACACGGGT
1 GTGTGGGACCACACGGGT
*
10913415 GTGTGGGACCACATGGGT
1 GTGTGGGACCACACGGGT
10913433 AGTCCACACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.14, C:0.20, G:0.46, T:0.20
Consensus pattern (18 bp):
GTGTGGGACCACACGGGT
Found at i:10916184 original size:27 final size:27
Alignment explanation
Indices: 10916154--10916331 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
10916144 ATATTGAGTC
* * * *
10916154 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
10916181 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
10916208 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
10916236 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
10916263 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
10916290 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
10916317 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
10916332 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:10916293 original size:82 final size:81
Alignment explanation
Indices: 10916175--10916330 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
10916165 TGCTATATAA
* *
10916175 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
10916240 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
10916257 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
10916321 CACTTAGTGC
65 CACTTAGTGC
10916331 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Done.