Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 310 of 313
Found at i:95382815 original size:58 final size:58
Alignment explanation
Indices: 95382745--95382859 Score: 221
Period size: 58 Copynumber: 2.0 Consensus size: 58
95382735 GACTTGAGAT
95382745 AATACCTAAGGAAAAATCCACCTAGACTTTACTTGTTATTCTAGCTCCGAACCGGACG
1 AATACCTAAGGAAAAATCCACCTAGACTTTACTTGTTATTCTAGCTCCGAACCGGACG
*
95382803 AATACCTAAGGAAAAATCCACCTAGACTTTACTTGTTATTCTGGCTCCGAACCGGAC
1 AATACCTAAGGAAAAATCCACCTAGACTTTACTTGTTATTCTAGCTCCGAACCGGAC
95382860 AATTTATTCA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (58 bp):
AATACCTAAGGAAAAATCCACCTAGACTTTACTTGTTATTCTAGCTCCGAACCGGACG
Found at i:95398429 original size:21 final size:21
Alignment explanation
Indices: 95398405--95398482 Score: 120
Period size: 21 Copynumber: 3.7 Consensus size: 21
95398395 AATCCCCACA
* **
95398405 TGGTGTGTTGGTTGGTATGGG
1 TGGTGTATTGGTTGGTACAGG
95398426 TGGTGTATTGGTTGGTACAGG
1 TGGTGTATTGGTTGGTACAGG
95398447 TGGTGTATTGGTTGGTACAGG
1 TGGTGTATTGGTTGGTACAGG
*
95398468 TGGTGTGTTGGTTGG
1 TGGTGTATTGGTTGG
95398483 ATTGGGATGG
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 53 1.00
ACGTcount: A:0.09, C:0.03, G:0.47, T:0.41
Consensus pattern (21 bp):
TGGTGTATTGGTTGGTACAGG
Found at i:95400197 original size:11 final size:11
Alignment explanation
Indices: 95400183--95400208 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
95400173 AGAATGCTGA
95400183 ATGAATGAGGG
1 ATGAATGAGGG
95400194 ATGAATGAGGG
1 ATGAATGAGGG
95400205 ATGA
1 ATGA
95400209 GGGATGATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.42, T:0.19
Consensus pattern (11 bp):
ATGAATGAGGG
Found at i:95408002 original size:21 final size:20
Alignment explanation
Indices: 95407972--95408014 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
95407962 TAATATTGGT
* *
95407972 AAGTGGATTAGAAAATAAAAG
1 AAGTGAATTA-AAAAGAAAAG
95407993 AAGTGAATTAAAAAGAAAAG
1 AAGTGAATTAAAAAGAAAAG
95408013 AA
1 AA
95408015 AGGATGAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.63, C:0.00, G:0.21, T:0.16
Consensus pattern (20 bp):
AAGTGAATTAAAAAGAAAAG
Found at i:95408787 original size:13 final size:13
Alignment explanation
Indices: 95408769--95408793 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
95408759 TAATGGTATG
95408769 TTGAATCCATGAC
1 TTGAATCCATGAC
95408782 TTGAATCCATGA
1 TTGAATCCATGA
95408794 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:95409382 original size:27 final size:27
Alignment explanation
Indices: 95409351--95409528 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
95409341 TAAATTGTAC
*
95409351 AGCACTAAGTGTGCGATTTAACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *** *
95409378 TGCACTAAGTGTGCGAAAAGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
95409404 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
95409432 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
95409460 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
95409487 AGCACTAAGTGTGCAAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
95409514 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
95409529 GGCTCAATAT
Statistics
Matches: 124, Mismatches: 24, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
27 101 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:95409519 original size:82 final size:81
Alignment explanation
Indices: 95409348--95409528 Score: 204
Period size: 82 Copynumber: 2.2 Consensus size: 81
95409338 GATTAAATTG
* *
95409348 TACAGCACTAAGTGTGCGATTTAACTATGTTGCACTAAGTGTGCGAAAAGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTAACTATGTAGCACTAAGTGTGCGAAAAGAATACGATGCACTAA
95409413 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * *** *
95409429 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTAACTATGTAGCACTAAGTGTGCGAAAAGAATACGAT-GCACT
**
95409493 AAGTGTGC-AAGTTGATTA
64 AAGTGTGCGAA-TTGACCA
* *
95409511 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
95409529 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
81 20 0.24
82 62 0.76
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTAACTATGTAGCACTAAGTGTGCGAAAAGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:95426056 original size:32 final size:32
Alignment explanation
Indices: 95426020--95426090 Score: 124
Period size: 32 Copynumber: 2.2 Consensus size: 32
95426010 ACATAGGATT
*
95426020 TCGATATGTGATATGCATGTAAGACCATGGCG
1 TCGATATGTGATATGCATGTAAGACCATGGCA
*
95426052 TCGATATGTGATGTGCATGTAAGACCATGGCA
1 TCGATATGTGATATGCATGTAAGACCATGGCA
95426084 TCGATAT
1 TCGATAT
95426091 ATGTGTGCGA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (32 bp):
TCGATATGTGATATGCATGTAAGACCATGGCA
Found at i:95426105 original size:31 final size:32
Alignment explanation
Indices: 95426020--95426109 Score: 121
Period size: 32 Copynumber: 2.8 Consensus size: 32
95426010 ACATAGGATT
* * *
95426020 TCGATATGTGATATGCATGTAAGACCATGGCG
1 TCGATATATGATGTGCATGTAAGACCATGGCA
*
95426052 TCGATATGTGATGTGCATGTAAGACCATGGCA
1 TCGATATATGATGTGCATGTAAGACCATGGCA
95426084 TCGATATATG-TGTGCGA-GTAAGACCA
1 TCGATATATGATGTGC-ATGTAAGACCA
95426110 CGTTTAATAC
Statistics
Matches: 54, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
31 14 0.26
32 40 0.74
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.28
Consensus pattern (32 bp):
TCGATATATGATGTGCATGTAAGACCATGGCA
Found at i:95438132 original size:13 final size:13
Alignment explanation
Indices: 95438114--95438139 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
95438104 GCTCAGCATG
95438114 GACACGCCCGTGT
1 GACACGCCCGTGT
95438127 GACACGCCCGTGT
1 GACACGCCCGTGT
95438140 TCGATTACTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.31, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:95448247 original size:47 final size:47
Alignment explanation
Indices: 95448178--95448268 Score: 182
Period size: 47 Copynumber: 1.9 Consensus size: 47
95448168 CATGCTACTC
95448178 AAGATTCTTTTCAGGAAATCGTACACAAGGACACGATGGAACTGCTT
1 AAGATTCTTTTCAGGAAATCGTACACAAGGACACGATGGAACTGCTT
95448225 AAGATTCTTTTCAGGAAATCGTACACAAGGACACGATGGAACTG
1 AAGATTCTTTTCAGGAAATCGTACACAAGGACACGATGGAACTG
95448269 TGCCTCGTCC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (47 bp):
AAGATTCTTTTCAGGAAATCGTACACAAGGACACGATGGAACTGCTT
Found at i:95452164 original size:18 final size:19
Alignment explanation
Indices: 95452141--95452177 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
95452131 TCTTATGATT
95452141 ATATATCTATCTTT-TTCA
1 ATATATCTATCTTTGTTCA
95452159 ATATATCTATCTTTGTTCA
1 ATATATCTATCTTTGTTCA
95452178 TTGAGGGCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.27, C:0.16, G:0.03, T:0.54
Consensus pattern (19 bp):
ATATATCTATCTTTGTTCA
Found at i:95456139 original size:56 final size:56
Alignment explanation
Indices: 95456070--95456230 Score: 189
Period size: 56 Copynumber: 2.9 Consensus size: 56
95456060 CATGGCATCA
* *
95456070 ATATGTGTACGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGAGTTCGAT
1 ATATGTGTGCGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGACTTCGAT
* * * * *
95456126 ATATGTGTGCGAGTAAGACTACGTTTAATACGTTGGTATCGCTATGTGCCTTCGAT
1 ATATGTGTGCGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGACTTCGAT
* * * * **
95456182 ATATGTGTGTGAGTAAAACCCTGTCTAGGACAG-TGGCATCGATATGTGA
1 ATATGTGTGCGAGTAAGACCATGTTTAATAC-GTTGGCATCGATATGTGA
95456231 TTACATGTAA
Statistics
Matches: 86, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
56 85 0.99
57 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (56 bp):
ATATGTGTGCGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGACTTCGAT
Found at i:95458792 original size:48 final size:48
Alignment explanation
Indices: 95458569--95458933 Score: 222
Period size: 48 Copynumber: 7.7 Consensus size: 48
95458559 TTATTTGTGT
* *
95458569 GCCAGTGTAAGA-CATGTCTAGGACAT-GCATCAGCCACAT-TATG-AGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-GGCACATATA-GAAGA
95458615 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG--CAT-TGAGACGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACATAT-AGA--AGA
** * * * * * *
95458663 GCTTGTGAAAGA-CATGTTTGGGACAT-GCATCGGC-TA-AGAGATGT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACATATAGAAGA
* * * *
95458707 GTCAGTGTAAGACCATGTCTGCGACATGGCATTGGCACATATAGAAGT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACATATAGAAGA
* * *
95458755 GCCAGTGTAAGATCATGTCTGGGACATGGCAGCGGCACGA-ATATGTGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-ATATA-G-AAGA
* * ** * * *
95458805 GCTAGTGTAAGACCATGTCTAGGACATGGTGTCGGCCTCGATTTTGATAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CAC-ATATAGA-AGA
* * * * *
95458856 --CAGTGTAAGACCATGTCTAGGACATGGCATC--AACTTGATGGATGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAT-ATAGAAGA
* * *
95458901 GCTAGTGTATGACCAAGTCTGGGACATGGCATC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC
95458934 TGTATTATAC
Statistics
Matches: 248, Mismatches: 50, Indels: 41
0.73 0.15 0.12
Matches are distributed among these distances:
44 9 0.04
45 20 0.08
46 34 0.14
47 56 0.23
48 59 0.24
49 30 0.12
50 31 0.12
51 8 0.03
52 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACATATAGAAGA
Found at i:95466162 original size:40 final size:40
Alignment explanation
Indices: 95466072--95466293 Score: 243
Period size: 40 Copynumber: 5.6 Consensus size: 40
95466062 ACCCAAGTAT
* ** * * *
95466072 CTTCGGGATTTAG-CCGGATATAACCCCTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
95466110 CTTCGAGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
95466150 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
** * * *
95466190 CTTCGGGTTTTGGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
95466230 CTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACAAATGC
95466271 CTTCGGGACTTAGCCCGGATATA
1 CTTCGGGACTTAGCCCGGATATA
95466294 ATTCGAATAA
Statistics
Matches: 150, Mismatches: 29, Indels: 7
0.81 0.16 0.04
Matches are distributed among these distances:
38 10 0.07
39 16 0.11
40 93 0.62
41 28 0.19
42 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:95468429 original size:16 final size:16
Alignment explanation
Indices: 95468408--95468450 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
95468398 GTATATCGGC
95468408 AAAAGCTAAAATGCTG
1 AAAAGCTAAAATGCTG
*
95468424 AAAAGCTGAAATGCTG
1 AAAAGCTAAAATGCTG
*
95468440 AAAAGCCAAAA
1 AAAAGCTAAAA
95468451 GTTTGGCTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.53, C:0.14, G:0.19, T:0.14
Consensus pattern (16 bp):
AAAAGCTAAAATGCTG
Found at i:95468433 original size:8 final size:8
Alignment explanation
Indices: 95468408--95468445 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
95468398 GTATATCGGC
95468408 AAAAGCT-
1 AAAAGCTG
95468415 AAAATGCTG
1 AAAA-GCTG
95468424 AAAAGCTG
1 AAAAGCTG
*
95468432 AAATGCTG
1 AAAAGCTG
95468440 AAAAGC
1 AAAAGC
95468446 CAAAAGTTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
7 4 0.15
8 19 0.70
9 4 0.15
ACGTcount: A:0.50, C:0.13, G:0.21, T:0.16
Consensus pattern (8 bp):
AAAAGCTG
Found at i:95468749 original size:29 final size:29
Alignment explanation
Indices: 95468717--95468836 Score: 154
Period size: 29 Copynumber: 4.2 Consensus size: 29
95468707 CCTAACGGGT
* *
95468717 CATATGAATGTGAATTGGGCCTGATGGGC
1 CATATAAATGTGAATTGGGCCGGATGGGC
*
95468746 CATATAAACGTGAATTGGGCCGGATGGGC
1 CATATAAATGTGAATTGGGCCGGATGGGC
* *
95468775 CATATAAACGTGAATTGGGCCGGATAGGC
1 CATATAAATGTGAATTGGGCCGGATGGGC
* *
95468804 CATATAAATGAG-ATTGGGCC-TAGTGGGC
1 CATATAAATGTGAATTGGGCCGGA-TGGGC
95468832 CATAT
1 CATAT
95468837 GCATGTATGT
Statistics
Matches: 82, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
27 1 0.01
28 17 0.21
29 64 0.78
ACGTcount: A:0.28, C:0.16, G:0.32, T:0.24
Consensus pattern (29 bp):
CATATAAATGTGAATTGGGCCGGATGGGC
Found at i:95468794 original size:58 final size:57
Alignment explanation
Indices: 95468674--95468836 Score: 161
Period size: 58 Copynumber: 2.8 Consensus size: 57
95468664 ATAATGTGGT
* * * * ** * * *
95468674 TTGGGCCAGAT-GGACCATATAAATGAGGTTAGGCCTAACGGGTCATATGAATGTGAA
1 TTGGGCCGGATAGG-CCATATAAATGAGATTGGGCCGAGTGGGCCATATAAACGTGAA
* *
95468731 TTGGGCCTGATGGGCCATATAAACGTGA-ATTGGGCCG-GATGGGCCATATAAACGTGAA
1 TTGGGCCGGATAGGCCATATAAA--TGAGATTGGGCCGAG-TGGGCCATATAAACGTGAA
*
95468789 TTGGGCCGGATAGGCCATATAAATGAGATTGGGCCTAGTGGGCCATAT
1 TTGGGCCGGATAGGCCATATAAATGAGATTGGGCCGAGTGGGCCATAT
95468837 GCATGTATGT
Statistics
Matches: 88, Mismatches: 12, Indels: 12
0.79 0.11 0.11
Matches are distributed among these distances:
56 3 0.03
57 37 0.42
58 45 0.51
59 3 0.03
ACGTcount: A:0.28, C:0.16, G:0.32, T:0.24
Consensus pattern (57 bp):
TTGGGCCGGATAGGCCATATAAATGAGATTGGGCCGAGTGGGCCATATAAACGTGAA
Found at i:95470760 original size:58 final size:59
Alignment explanation
Indices: 95470668--95470789 Score: 167
Period size: 58 Copynumber: 2.1 Consensus size: 59
95470658 TCCCTCCCCA
* *
95470668 ATCCCAAAAGGTAAAATTCGGATACCATTACATGTTCAGTACCTAATAATGAATGAATC
1 ATCCCAAAAGGTAAAATTCAGATACCATTACATGTTCAGTACCTAAAAATGAATGAATC
* * *
95470727 ATCCC-AAAGGTAGAAA-TCAGATACCGTTGCATGTTCGGTACCTAAAAATGAATGAATC
1 ATCCCAAAAGGTA-AAATTCAGATACCATTACATGTTCAGTACCTAAAAATGAATGAATC
*
95470785 GTCCC
1 ATCCC
95470790 TGTCCCTCCC
Statistics
Matches: 56, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
58 48 0.86
59 8 0.14
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.25
Consensus pattern (59 bp):
ATCCCAAAAGGTAAAATTCAGATACCATTACATGTTCAGTACCTAAAAATGAATGAATC
Found at i:95477692 original size:43 final size:43
Alignment explanation
Indices: 95477645--95477814 Score: 184
Period size: 43 Copynumber: 4.0 Consensus size: 43
95477635 GACGTTGGTG
* *
95477645 GTGTGAGAGCCTCGAGCAGCATCGGTACCTTGGTACCTCAGAT
1 GTGTGAGAGCCTCGAGCAGCATCGGCACCTTGGTGCCTCAGAT
* * *
95477688 GTGTGGGAGCCTCAAGCAGCACCGGCACCTTGGTG-CTC-GAAT
1 GTGTGAGAGCCTCGAGCAGCATCGGCACCTTGGTGCCTCAG-AT
* * * * *
95477730 GTG-CAGGGGCCTTGAGCAGCATCGACACCTTGGTGCCTCGGAT
1 GTGTGA-GAGCCTCGAGCAGCATCGGCACCTTGGTGCCTCAGAT
* * *
95477773 GTGTGGGAGCCTCGAGCAACATCGGCACCATGGTGCCTCAGA
1 GTGTGAGAGCCTCGAGCAGCATCGGCACCTTGGTGCCTCAGA
95477815 CATCATCGGC
Statistics
Matches: 102, Mismatches: 20, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
41 1 0.01
42 32 0.31
43 68 0.67
44 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.33, T:0.20
Consensus pattern (43 bp):
GTGTGAGAGCCTCGAGCAGCATCGGCACCTTGGTGCCTCAGAT
Found at i:95477763 original size:85 final size:85
Alignment explanation
Indices: 95477653--95477808 Score: 231
Period size: 85 Copynumber: 1.8 Consensus size: 85
95477643 TGGTGTGAGA
** * *
95477653 GCCTCGAGCAGCATCGGTACCTTGGTACCTCAGATGTGTGGGAGCCTCAAGCAGCACCGGCACCT
1 GCCTCGAGCAGCATCGACACCTTGGTACCTCAGATGTGTGGGAGCCTCAAGCAACACCGGCACCA
95477718 TGGTGCTCGAATGTGCAGGG
66 TGGTGCTCGAATGTGCAGGG
* * * * *
95477738 GCCTTGAGCAGCATCGACACCTTGGTGCCTCGGATGTGTGGGAGCCTCGAGCAACATCGGCACCA
1 GCCTCGAGCAGCATCGACACCTTGGTACCTCAGATGTGTGGGAGCCTCAAGCAACACCGGCACCA
95477803 TGGTGC
66 TGGTGC
95477809 CTCAGACATC
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
85 62 1.00
ACGTcount: A:0.19, C:0.29, G:0.33, T:0.20
Consensus pattern (85 bp):
GCCTCGAGCAGCATCGACACCTTGGTACCTCAGATGTGTGGGAGCCTCAAGCAACACCGGCACCA
TGGTGCTCGAATGTGCAGGG
Found at i:95477956 original size:43 final size:43
Alignment explanation
Indices: 95477891--95478194 Score: 237
Period size: 43 Copynumber: 7.1 Consensus size: 43
95477881 CATGTGTGAA
* *
95477891 AGCCTC-AGCACCA-CTGGCAACCTAGTCCCTTGGTCGTGCGGG
1 AGCCTCGAGCACCATC-AGCAACCTAGGCCCTTGGTCGTGCGGG
* *
95477933 AGCCTCGAGCACCATCAGTAACCTAGGCCCTTGGTCGTACGGG
1 AGCCTCGAGCACCATCAGCAACCTAGGCCCTTGGTCGTGCGGG
* * * *
95477976 AGCCT-TAGGCACCATCGGCAACCTAGGCCCTTGGTCATGCGAG
1 AGCCTCGA-GCACCATCAGCAACCTAGGCCCTTGGTCGTGCGGG
* **
95478019 AGCCTCG-GCACCATC-GACAACCTAAGCCCTTGGTTATGCGGG
1 AGCCTCGAGCACCATCAG-CAACCTAGGCCCTTGGTCGTGCGGG
* * * * ***
95478061 AGCCTCGGGCACCATCGGC-ACTTTGTTGCTTGGAT-GTGCGGG
1 AGCCTCGAGCACCATCAGCAACCTAGGCCCTTGG-TCGTGCGGG
* * * **
95478103 AGCCTC-AGACACCATCAGCAACCTAAGCCCTTCGTTGTGTAGG
1 AGCCTCGAG-CACCATCAGCAACCTAGGCCCTTGGTCGTGCGGG
* * * * * * *
95478146 AGCCTTGGGCACCACCAGCAAACTAGGCCTTTGGTTGTGCAGG
1 AGCCTCGAGCACCATCAGCAACCTAGGCCCTTGGTCGTGCGGG
95478189 AGCCTC
1 AGCCTC
95478195 AGGCATCATG
Statistics
Matches: 209, Mismatches: 41, Indels: 23
0.77 0.15 0.08
Matches are distributed among these distances:
41 2 0.01
42 74 0.35
43 130 0.62
44 3 0.01
ACGTcount: A:0.20, C:0.32, G:0.28, T:0.20
Consensus pattern (43 bp):
AGCCTCGAGCACCATCAGCAACCTAGGCCCTTGGTCGTGCGGG
Found at i:95478061 original size:85 final size:86
Alignment explanation
Indices: 95477891--95478134 Score: 250
Period size: 85 Copynumber: 2.9 Consensus size: 86
95477881 CATGTGTGAA
* * * *
95477891 AGCCTCA-GCACCA-CTGGCAACCTAGTCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCAGTAA
1 AGCCTCAGGCACCATC-GGCAACCTAGGCCCTTGGTCATGCGAGAGCCTCGAGCACCATCAGCAA
* *
95477954 CCTAGGCCCTTGGTCGTACGGG
65 CCTAAGCCCTTGGTCATACGGG
*
95477976 AGCCTTAGGCACCATCGGCAACCTAGGCCCTTGGTCATGCGAGAGCCTCG-GCACCATC-GACAA
1 AGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTCATGCGAGAGCCTCGAGCACCATCAG-CAA
* *
95478039 CCTAAGCCCTTGGTTATGCGGG
65 CCTAAGCCCTTGGTCATACGGG
* * * *** * *
95478061 AGCCTCGGGCACCATCGGC-ACTTTGTTGCTTGGAT-GTGCGGGAGCCTC-AGACACCATCAGCA
1 AGCCTCAGGCACCATCGGCAACCTAGGCCCTTGG-TCATGCGAGAGCCTCGAG-CACCATCAGCA
95478123 ACCTAAGCCCTT
64 ACCTAAGCCCTT
95478135 CGTTGTGTAG
Statistics
Matches: 134, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
84 22 0.16
85 73 0.54
86 38 0.28
87 1 0.01
ACGTcount: A:0.20, C:0.33, G:0.27, T:0.20
Consensus pattern (86 bp):
AGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTCATGCGAGAGCCTCGAGCACCATCAGCAAC
CTAAGCCCTTGGTCATACGGG
Found at i:95478357 original size:199 final size:200
Alignment explanation
Indices: 95478013--95478392 Score: 534
Period size: 199 Copynumber: 1.9 Consensus size: 200
95478003 CCCTTGGTCA
* * *
95478013 TGCGAGAGCCTCGGCACCATCGACAACCTAAGCCCTTGGTTATGCGGGAGCCTCGGGCACCATCG
1 TGCGAGAGCCTCGGCACCAGCGACAACCTAAGCCCTTGGTCACGCGGGAGCCTCGGGCACCATCG
* * *
95478078 GCACTTTGTTGCTTGGATGTGCGGGAGCCTCAGACACCATCAGCAACCTAAGCCCTTCGTTGTGT
66 GCACCTTGGTGCTTGGATGTGCGGGAGCCTCAGACACCATCAGCAACCTAAGCCCTTCGTCGTGT
* *
95478143 AGGAGCCTTGGGCACCACCAGCAAACTAGGCCTTTGGTTGTGCAGG-AGCCTCAGGCATCATGGT
131 AGGAGCCTCGGGCACCACCAGCAAACTAGGCCCTTGGTTGTGC-GGTAGCCTCAGGCATCATGGT
95478207 TGGATG
195 TGGATG
* * * * *
95478213 TGCGAGAGCCTCGGCACCAGCGGCAACTTAGGCCCTTGGTCGCGTGGGA-CCTCGGGCACCATCG
1 TGCGAGAGCCTCGGCACCAGCGACAACCTAAGCCCTTGGTCACGCGGGAGCCTCGGGCACCATCG
* * *
95478277 GCACCTTGGTGCTTGGATGTGGGGGAGCCTCAGGCACCATC-GACAACCT-AGTCCCTTTGTCGT
66 GCACCTTGGTGCTTGGATGTGCGGGAGCCTCAGACACCATCAG-CAACCTAAG-CCCTTCGTCGT
* * *
95478340 GTAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTTGTGCGGTAGCCT
129 GTAGGAGCCTCGGGCACCACCAGCAAACTAGGCCCTTGGTTGTGCGGTAGCCT
95478393 TGGCACCATC
Statistics
Matches: 158, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
198 5 0.03
199 112 0.71
200 41 0.26
ACGTcount: A:0.18, C:0.30, G:0.31, T:0.21
Consensus pattern (200 bp):
TGCGAGAGCCTCGGCACCAGCGACAACCTAAGCCCTTGGTCACGCGGGAGCCTCGGGCACCATCG
GCACCTTGGTGCTTGGATGTGCGGGAGCCTCAGACACCATCAGCAACCTAAGCCCTTCGTCGTGT
AGGAGCCTCGGGCACCACCAGCAAACTAGGCCCTTGGTTGTGCGGTAGCCTCAGGCATCATGGTT
GGATG
Found at i:95478361 original size:43 final size:43
Alignment explanation
Indices: 95478218--95478732 Score: 487
Period size: 43 Copynumber: 12.1 Consensus size: 43
95478208 GGATGTGCGA
* * * **
95478218 GAGCCTC-GGCACCAGCGGCAACTTAGGCCCTTGGTCGCGTGG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCAG
* ** **
95478260 GA-CCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGGGG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCAG
* * * * *
95478301 GAGCCTCAGGCACCATCGACAACCTAGTCCCTTTGTCGTGTAG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCAG
*
95478344 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTTGTGC-G
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCAG
* * * **
95478386 GTAGCCT-TGGCACCATCGGCAACCTAAGCCCTTGGTCATGTGG
1 G-AGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCAG
* *
95478429 GAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGCCGCGCAG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCAG
* * * * * * *
95478471 AAGCCTCAGGCACCATCAGCAACCTAGTCCTTTCGTCGTGCGG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCAG
* *
95478514 GAGCCTCGGGCACCATCAGCAACCTAGGCCCTTGGTCGTAC-G
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCAG
* * *
95478556 AGAGCCTTGTGCACCATCGGCAACCTAGG-CCTTGGTCGGGCTA-
1 -GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGC-AG
* * * ** *
95478599 GAGCCTCGGCCACCATCGGC-ACATTGGTGCTTGGAT-GTGCGG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCAG
* * *
95478641 GAGCCTCGGACACCATCGACAACCTAGGCCCTTAGTCGTGCAG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCAG
*
95478684 GAGCCTCGGGCACCATCTGCAACCTAGGCCCTTGGTCGTGCAG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCAG
*
95478727 AAGCCT
1 GAGCCT
95478733 TAGTGTAACA
Statistics
Matches: 381, Mismatches: 75, Indels: 33
0.78 0.15 0.07
Matches are distributed among these distances:
41 25 0.07
42 154 0.40
43 202 0.53
ACGTcount: A:0.17, C:0.33, G:0.30, T:0.19
Consensus pattern (43 bp):
GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCAG
Found at i:95478362 original size:85 final size:83
Alignment explanation
Indices: 95478206--95478718 Score: 494
Period size: 85 Copynumber: 6.0 Consensus size: 83
95478196 GGCATCATGG
* * * * * *
95478206 TTGGATGTGCGAGAGCCTCGGCACCAGCGGCAACTTAGGCCCTTGGTCGCGTGGGA-CCTCGGGC
1 TTGGATGTGCGGGAGCCTCGGCACCATCGACAACCTA-GCCCTTGGTCGTGTAGGAGCCTCGGGC
* **
95478270 ACCATCGGCACCTTGGTGC
65 ACCATCGGCACCTAGGCCC
* *
95478289 TTGGATGTGGGGGAGCCTCAGGCACCATCGACAACCTAGTCCCTTTGTCGTGTAGGAGCCTCGGG
1 TTGGATGTGCGGGAGCCTC-GGCACCATCGACAACCTAG-CCCTTGGTCGTGTAGGAGCCTCGGG
95478354 CACCATCGGCAACCTAGGCCC
64 CACCATCGGC-ACCTAGGCCC
* * * * * *
95478375 TTGGTTGTGCGGTAGCCTTGGCACCATCGGCAACCTAAGCCCTTGGTCATGTGGGAGCCTCGGGC
1 TTGGATGTGCGGGAGCCTCGGCACCATCGACAACCT-AGCCCTTGGTCGTGTAGGAGCCTCGGGC
95478440 ACCATCGGCACCTAGGCCC
65 ACCATCGGCACCTAGGCCC
** * * * * * **
95478459 TTGGCCGCGCAGAAGCCTCAGGCACCATC-AGCAACCTAGTCCTTTCGTCGTGCGGGAGCCTCGG
1 TTGGATGTGCGGGAGCCTC-GGCACCATCGA-CAACCTAG-CCCTTGGTCGTGTAGGAGCCTCGG
*
95478523 GCACCATCAGCAACCTAGGCCC
63 GCACCATCGGC-ACCTAGGCCC
* * * * * *
95478545 TTGG-TCGTACGAGAGCCTTGTGCACCATCGGCAACCTAGGCCTTGGTCGGGCTA-GAGCCTCGG
1 TTGGAT-GTGCGGGAGCCTCG-GCACCATCGACAACCTAGCCCTTGGTCGTG-TAGGAGCCTCGG
* * * **
95478608 CCACCATCGGCACATTGGTGC
63 GCACCATCGGCACCTAGGCCC
* *
95478629 TTGGATGTGCGGGAGCCTCGGACACCATCGACAACCTAGGCCCTTAGTCGTGCAGGAGCCTCGGG
1 TTGGATGTGCGGGAGCCTCGG-CACCATCGACAACCTA-GCCCTTGGTCGTGTAGGAGCCTCGGG
*
95478694 CACCATCTGCAACCTAGGCCC
64 CACCATCGGC-ACCTAGGCCC
95478715 TTGG
1 TTGG
95478719 TCGTGCAGAA
Statistics
Matches: 347, Mismatches: 65, Indels: 33
0.78 0.15 0.07
Matches are distributed among these distances:
83 19 0.05
84 91 0.26
85 166 0.48
86 71 0.20
ACGTcount: A:0.17, C:0.33, G:0.31, T:0.19
Consensus pattern (83 bp):
TTGGATGTGCGGGAGCCTCGGCACCATCGACAACCTAGCCCTTGGTCGTGTAGGAGCCTCGGGCA
CCATCGGCACCTAGGCCC
Found at i:95478519 original size:170 final size:169
Alignment explanation
Indices: 95478212--95478733 Score: 662
Period size: 170 Copynumber: 3.1 Consensus size: 169
95478202 ATGGTTGGAT
* * * *
95478212 GTGCGAGAGCCTCGGCACCAGCGGCAACTTAGGCCCTTGGTCGCGTGGGA-CCTCGGGCACCATC
1 GTGCGAGAGCCTTGGCACCATCGGCAACCTAAGCCCTTGGTCGCGTGGGAGCCTCGGGCACCATC
*
95478276 GGCACCTTGGTGCTTGGATGTGGGGGAGCCTCAGGCACCATCGACAACCTAGTCCCTTTGTCGTG
66 GGCACCTTGGTGCTTGGATGTGCGGGAGCCTCAGGCACCATCGACAACCTAGT-CCTTTGTCGTG
* * *
95478341 TAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTT
130 CAGGAGCCTCGGGCACCATCAGCAACCTAGGCCCTTGGTC
**
95478381 GTGCG-GTAGCCTTGGCACCATCGGCAACCTAAGCCCTTGGTCATGTGGGAGCCTCGGGCACCAT
1 GTGCGAG-AGCCTTGGCACCATCGGCAACCTAAGCCCTTGGTCGCGTGGGAGCCTCGGGCACCAT
* ** ** * * *
95478445 CGGCACCTAGGCCCTTGGCCGCGCAGAAGCCTCAGGCACCATC-AGCAACCTAGTCCTTTCGTCG
65 CGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCAGGCACCATCGA-CAACCTAGTCCTTT-GTCG
*
95478509 TGCGGGAGCCTCGGGCACCATCAGCAACCTAGGCCCTTGGTC
128 TGCAGGAGCCTCGGGCACCATCAGCAACCTAGGCCCTTGGTC
* * * * *
95478551 GTACGAGAGCCTTGTGCACCATCGGCAACCT-AGGCCTTGGTCGGGCT-AGAGCCTCGGCCACCA
1 GTGCGAGAGCCTTG-GCACCATCGGCAACCTAAGCCCTTGGTCGCG-TGGGAGCCTCGGGCACCA
* * *
95478614 TCGGCACATTGGTGCTTGGATGTGCGGGAGCCTC-GGACACCATCGACAACCTAGGCCCTTAGTC
64 TCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCAGG-CACCATCGACAACCTA-GTCCTTTGTC
*
95478678 GTGCAGGAGCCTCGGGCACCATCTGCAACCTAGGCCCTTGGTC
127 GTGCAGGAGCCTCGGGCACCATCAGCAACCTAGGCCCTTGGTC
95478721 GTGC-AGAAGCCTT
1 GTGCGAG-AGCCTT
95478734 AGTGTAACAC
Statistics
Matches: 303, Mismatches: 39, Indels: 21
0.83 0.11 0.06
Matches are distributed among these distances:
168 1 0.00
169 52 0.17
170 226 0.75
171 24 0.08
ACGTcount: A:0.17, C:0.33, G:0.30, T:0.19
Consensus pattern (169 bp):
GTGCGAGAGCCTTGGCACCATCGGCAACCTAAGCCCTTGGTCGCGTGGGAGCCTCGGGCACCATC
GGCACCTTGGTGCTTGGATGTGCGGGAGCCTCAGGCACCATCGACAACCTAGTCCTTTGTCGTGC
AGGAGCCTCGGGCACCATCAGCAACCTAGGCCCTTGGTC
Found at i:95479774 original size:39 final size:39
Alignment explanation
Indices: 95479731--95479879 Score: 199
Period size: 39 Copynumber: 3.8 Consensus size: 39
95479721 ACATATTACC
* * * * *
95479731 AGCACGTAGCCTACAGACCTTAAGTCCGGTTATAATTCT
1 AGCACATAGCCTACGGACCCTAAGTCCGGATATAATTCA
*
95479770 AGCACATAGCCTACGGACCCTAAGTCCAGATATAATTCA
1 AGCACATAGCCTACGGACCCTAAGTCCGGATATAATTCA
* * *
95479809 AGCTCATAGCCTGCGGACCCTAAGTCCGGATATAATTCC
1 AGCACATAGCCTACGGACCCTAAGTCCGGATATAATTCA
* *
95479848 AGCACATAGCCTGCGGACCCTAAGTTCGGATA
1 AGCACATAGCCTACGGACCCTAAGTCCGGATA
95479880 ACCATCACTG
Statistics
Matches: 98, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 98 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (39 bp):
AGCACATAGCCTACGGACCCTAAGTCCGGATATAATTCA
Found at i:95479781 original size:78 final size:77
Alignment explanation
Indices: 95479699--95479871 Score: 177
Period size: 78 Copynumber: 2.2 Consensus size: 77
95479689 ACCAGCTCGA
* * * * * * *
95479699 AGCCTGCTGGACTTTAGCCCGGACAT-ATTACCAGCACGTAGCCTACAGACCTTAAGTCCGGTTA
1 AGCCTGC-GGACCTAAGCCCAGACATAATT-CAAGCACATAGCCTACAGACCCTAAGTCCGGATA
*
95479763 TAATTCTAGCACAT
64 TAATTCCAGCACAT
* * * * * *
95479777 AGCCTACGGACCCTAAGTCCAGATATAATTCAAGCTCATAGCCTGCGGACCCTAAGTCCGGATAT
1 AGCCTGCGGA-CCTAAGCCCAGACATAATTCAAGCACATAGCCTACAGACCCTAAGTCCGGATAT
95479842 AATTCCAGCACAT
65 AATTCCAGCACAT
95479855 AGCCTGCGGACCCTAAG
1 AGCCTGCGGA-CCTAAG
95479872 TTCGGATAAC
Statistics
Matches: 78, Mismatches: 15, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
77 3 0.04
78 72 0.92
79 3 0.04
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (77 bp):
AGCCTGCGGACCTAAGCCCAGACATAATTCAAGCACATAGCCTACAGACCCTAAGTCCGGATATA
ATTCCAGCACAT
Found at i:95481813 original size:27 final size:28
Alignment explanation
Indices: 95481729--95481826 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
95481719 CATGAGATTG
* * * *
95481729 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
95481758 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
95481786 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
95481813 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
95481827 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:95481837 original size:27 final size:27
Alignment explanation
Indices: 95481757--95481839 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
95481747 TAAATTGTAC
* *
95481757 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
95481785 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
95481812 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
95481839 A
1 A
95481840 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:95481840 original size:29 final size:27
Alignment explanation
Indices: 95481729--95481840 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
95481719 CATGAGATTG
** * *
95481729 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
95481758 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
95481786 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
95481813 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
95481841 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:95489984 original size:52 final size:52
Alignment explanation
Indices: 95489906--95490013 Score: 182
Period size: 52 Copynumber: 2.1 Consensus size: 52
95489896 GATTGGGATC
* *
95489906 CATTACTATATAAAAACACATTTTTAACTGTCAGAAATCATCACACTATCGT
1 CATTACTATACAAAAACACATTTTTAACTGTCAAAAATCATCACACTATCGT
*
95489958 CATTACTATACAGAAACACATTTTTAACTGTCAAAAATCATCACACTATCGT
1 CATTACTATACAAAAACACATTTTTAACTGTCAAAAATCATCACACTATCGT
95490010 -ATTA
1 CATTA
95490014 ACACTACATG
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
51 4 0.08
52 49 0.92
ACGTcount: A:0.41, C:0.21, G:0.06, T:0.32
Consensus pattern (52 bp):
CATTACTATACAAAAACACATTTTTAACTGTCAAAAATCATCACACTATCGT
Found at i:95491153 original size:39 final size:39
Alignment explanation
Indices: 95491088--95491199 Score: 152
Period size: 39 Copynumber: 2.9 Consensus size: 39
95491078 AGACATATTA
* * * *
95491088 CCAGCACGTAACCTGCGGACCTTAAGTCCGGTTATAATT
1 CCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATT
* * * *
95491127 CTAGCACATAGCTTGCGCACCCTAAGTCTGGATATAATT
1 CCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATT
95491166 CCAGCACATAGCCTGCGGACCCTAAGTCCGGATA
1 CCAGCACATAGCCTGCGGACCCTAAGTCCGGATA
95491200 AACATCACTG
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 61 1.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (39 bp):
CCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATT
Found at i:95493351 original size:42 final size:42
Alignment explanation
Indices: 95493295--95493421 Score: 114
Period size: 43 Copynumber: 3.0 Consensus size: 42
95493285 GGTCGTACGA
*
95493295 GAGCCTCA-AGCACCATCGGCACCTTGGTGCCTGGATGTGCGG
1 GAGCCTCAGA-CACCATTGGCACCTTGGTGCCTGGATGTGCGG
* * * * * *
95493337 GAGCCTCAGACACCATTGGTAACTTAGG-CCCTTGATCGTACTG
1 GAGCCTCAGACACCATTGGCACCTT-GGTGCCTGGAT-GTGCGG
* * *
95493380 GAGCCTCGGGCACCATTGGCACCTTGATGCCTCGGATGTGCG
1 GAGCCTCAGACACCATTGGCACCTTGGTGCCT-GGATGTGCG
95493422 AGCTAAAGAA
Statistics
Matches: 64, Mismatches: 16, Indels: 9
0.72 0.18 0.10
Matches are distributed among these distances:
42 27 0.42
43 34 0.53
44 3 0.05
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.22
Consensus pattern (42 bp):
GAGCCTCAGACACCATTGGCACCTTGGTGCCTGGATGTGCGG
Found at i:95493401 original size:85 final size:86
Alignment explanation
Indices: 95493256--95493421 Score: 228
Period size: 85 Copynumber: 1.9 Consensus size: 86
95493246 GGCTGTCACA
* *
95493256 CTCAGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGAGAGCCTCAAGCACCATCGGCACCTTG
1 CTCAGACACCATCGGCAACCTAGGCCCTTGATCGTACGAGAGCCTCAAGCACCATCGGCACCTTG
*
95493321 GTGCCT-GGATGTGCGGGAGC
66 ATGCCTCGGATGTGCGGGAGC
* * * ** *
95493341 CTCAGACACCATTGGTAACTTAGGCCCTTGATCGTACTG-GAGCCTCGGGCACCATTGGCACCTT
1 CTCAGACACCATCGGCAACCTAGGCCCTTGATCGTAC-GAGAGCCTCAAGCACCATCGGCACCTT
95493405 GATGCCTCGGATGTGCG
65 GATGCCTCGGATGTGCG
95493422 AGCTAAAGAA
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
85 60 0.86
86 10 0.14
ACGTcount: A:0.19, C:0.31, G:0.29, T:0.21
Consensus pattern (86 bp):
CTCAGACACCATCGGCAACCTAGGCCCTTGATCGTACGAGAGCCTCAAGCACCATCGGCACCTTG
ATGCCTCGGATGTGCGGGAGC
Found at i:95500692 original size:14 final size:14
Alignment explanation
Indices: 95500673--95500704 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
95500663 AGGTCATTTA
*
95500673 GCCCAACCAAATTG
1 GCCCAACCAAACTG
95500687 GCCCAACCAAACTG
1 GCCCAACCAAACTG
95500701 GCCC
1 GCCC
95500705 GGTGATTGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.31, C:0.44, G:0.16, T:0.09
Consensus pattern (14 bp):
GCCCAACCAAACTG
Found at i:95505319 original size:14 final size:14
Alignment explanation
Indices: 95505300--95505331 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
95505290 AGGTCATTTA
95505300 GCCCAACCAAACTG
1 GCCCAACCAAACTG
95505314 GCCCAACCAAACTG
1 GCCCAACCAAACTG
95505328 GCCC
1 GCCC
95505332 GGTGATTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.31, C:0.47, G:0.16, T:0.06
Consensus pattern (14 bp):
GCCCAACCAAACTG
Found at i:95513491 original size:26 final size:26
Alignment explanation
Indices: 95513461--95514318 Score: 1689
Period size: 26 Copynumber: 33.0 Consensus size: 26
95513451 TGAAATTCCC
*
95513461 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
95513487 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
95513513 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
95513539 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
95513565 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
95513591 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
95513617 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
95513643 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
95513669 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
95513695 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
95513721 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
95513747 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
95513773 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
95513799 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
95513825 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
95513851 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
95513877 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
95513903 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
95513929 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
95513955 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
95513981 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
95514007 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
95514033 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
95514059 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
95514085 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
95514111 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
95514137 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
95514163 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
95514189 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
95514215 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
95514241 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
95514267 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
95514293 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
95514319 CTCAATTTGT
Statistics
Matches: 830, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 830 1.00
ACGTcount: A:0.38, C:0.27, G:0.04, T:0.31
Consensus pattern (26 bp):
ATCATGAAACATTTACCTAACCCATT
Found at i:95521171 original size:99 final size:98
Alignment explanation
Indices: 95521040--95521236 Score: 376
Period size: 99 Copynumber: 2.0 Consensus size: 98
95521030 ACATCAAGAT
95521040 AGAAGCAAAATACATGAACTTACCTTCAATTTTCTTCCCCAAGTGACGGAACATTCAAGAGCTTT
1 AGAAGCAAAATACATGAACTTACCTTCAATTTTCTTCCCCAAGTGACGGAACATTCAAGAGCTTT
95521105 CTCCTCTCCTTTCTCTTCTCTAAATTTCGGCTG
66 CTCCTCTCCTTTCTCTTCTCTAAATTTCGGCTG
*
95521138 AGAAGCAAACTACCATGAACTTACCTTCAATTTTCTTCCCCAAGTGACGGAACATTCAAGAGCTT
1 AGAAGCAAAATA-CATGAACTTACCTTCAATTTTCTTCCCCAAGTGACGGAACATTCAAGAGCTT
95521203 TCTCCTCTCCTTTCTCTTCTCTAAATTTCGGCTG
65 TCTCCTCTCCTTTCTCTTCTCTAAATTTCGGCTG
95521237 TGATGAACAA
Statistics
Matches: 97, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
98 11 0.11
99 86 0.89
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.34
Consensus pattern (98 bp):
AGAAGCAAAATACATGAACTTACCTTCAATTTTCTTCCCCAAGTGACGGAACATTCAAGAGCTTT
CTCCTCTCCTTTCTCTTCTCTAAATTTCGGCTG
Found at i:95536006 original size:25 final size:25
Alignment explanation
Indices: 95535976--95536023 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
95535966 TACGAGTCAT
95535976 CCGGTC-CCTTACCTTTTGAAACATC
1 CCGGTCTCCTT-CCTTTTGAAACATC
*
95536001 CCGGTCTCCTTCCTTTTGGAACA
1 CCGGTCTCCTTCCTTTTGAAACA
95536024 AGAGCCTCTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 17 0.81
26 4 0.19
ACGTcount: A:0.17, C:0.35, G:0.15, T:0.33
Consensus pattern (25 bp):
CCGGTCTCCTTCCTTTTGAAACATC
Found at i:95536224 original size:43 final size:43
Alignment explanation
Indices: 95536177--95536564 Score: 289
Period size: 42 Copynumber: 9.1 Consensus size: 43
95536167 GGTGGTACGA
*
95536177 GAGCCTCGAGCAGCATCGGCACCATGGTGCCTCGGATGTGTGG
1 GAGCCTCGAGCAGCATCGGCACCATGGTGCCTCGGATGTGCGG
* * * *
95536220 GAGCCTCGAGTAGCATCGGTACCTTGGTG-CTCGGATATGCGG
1 GAGCCTCGAGCAGCATCGGCACCATGGTGCCTCGGATGTGCGG
* *
95536262 GGGCCTCGAGCAGCATCGGCACCTTGGTGCCTCGGATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCATGGTGCCTCGGATGTGCGG
* *
95536305 GAGCCTCGAGCAGCATTGGCACCATGGTGCCTCAGATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCATGGTGCCTCGGATGTGCGG
* * * * * * *
95536348 GAGCCTTG-GATACCATCGGCA-AACTAGG-CCCTTGGTTGTGCGG
1 GAGCCTCGAG-CAGCATCGGCACCA-T-GGTGCCTCGGATGTGCGG
* * * * * *
95536391 GAGCCTCGAGCACCATCGGCACCTTGGTG-GTTGGATGTACGA
1 GAGCCTCGAGCAGCATCGGCACCATGGTGCCTCGGATGTGCGG
* * * * *
95536433 GAGCCTCG-GCACCATCGGCAACC-TAAG-CCCTTGG-TCGTACGG
1 GAGCCTCGAGCAGCATCGGC-ACCAT-GGTGCCTCGGAT-GTGCGG
* * *
95536475 GAGCCTCGAGCACCATCGGCACC-TAGG-CCCTTGG-TCGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCAT-GGTGCCTCGGAT-GTGCGG
* * * ** *
95536517 GAGCCTCGGGCACCATTGGCACGTTGGTG-CTTGGATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCATGGTGCCTCGGATGTGCGG
95536559 GAGCCT
1 GAGCCT
95536565 TGGACACCAT
Statistics
Matches: 289, Mismatches: 41, Indels: 31
0.80 0.11 0.09
Matches are distributed among these distances:
41 13 0.04
42 138 0.48
43 135 0.47
44 3 0.01
ACGTcount: A:0.16, C:0.29, G:0.35, T:0.20
Consensus pattern (43 bp):
GAGCCTCGAGCAGCATCGGCACCATGGTGCCTCGGATGTGCGG
Found at i:95536281 original size:85 final size:86
Alignment explanation
Indices: 95536177--95536419 Score: 269
Period size: 85 Copynumber: 2.8 Consensus size: 86
95536167 GGTGGTACGA
* * *
95536177 GAGCCTCGAGCAGCATCGGCACCATGGTGCCTCGGATGTGTGGGAGCCTCGAGTAGCATCGGTAC
1 GAGCCTCGAGCAGCATCGGCACCATGGTGCCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
* *
95536242 CTTGGTG-CTCGGATATGCGG
66 CATGGTGCCTCAGATATGCGG
* * *
95536262 GGGCCTCGAGCAGCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGAGCAGCATTGGCAC
1 GAGCCTCGAGCAGCATCGGCACCATGGTGCCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
*
95536327 CATGGTGCCTCAGATGTGCGG
66 CATGGTGCCTCAGATATGCGG
* * * * * * * *
95536348 GAGCCTTG-GATACCATCGGCA-AACTAGG-CCCTTGGTTGTGCGGGAGCCTCGAGCACCATCGG
1 GAGCCTCGAG-CAGCATCGGCACCA-T-GGTGCCTCGGATGTGCGGGAGCCTCGAGCAGCATCGG
*
95536410 CACCTTGGTG
63 CACCATGGTG
95536420 GTTGGATGTA
Statistics
Matches: 133, Mismatches: 21, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
85 66 0.50
86 65 0.49
87 2 0.02
ACGTcount: A:0.16, C:0.28, G:0.35, T:0.20
Consensus pattern (86 bp):
GAGCCTCGAGCAGCATCGGCACCATGGTGCCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
CATGGTGCCTCAGATATGCGG
Found at i:95536473 original size:42 final size:42
Alignment explanation
Indices: 95536342--95537290 Score: 501
Period size: 43 Copynumber: 22.6 Consensus size: 42
95536332 TGCCTCAGAT
* * * *
95536342 GTGCGGGAGCCTTGGATACCATCGGCAAACTAGGCCCTTGGTT
1 GTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTC
* ***
95536385 GTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGGTTGGAT-
1 GTGCGGGAGCCTCG-GCACCATCGGCAACCTAGGCCCTTGG-TC
* * *
95536427 GTACGAGAGCCTCGGCACCATCGGCAACCTAAGCCCTTGGTC
1 GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTC
*
95536469 GTACGGGAGCCTCGAGCACCATCGGC-ACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCG-GCACCATCGGCAACCTAGGCCCTTGGTC
* * * **
95536511 GTGCGGGAGCCTCGGGCACCATTGGC-ACGTTGGTGCTTGGAT-
1 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGG-TC
* * **
95536553 GTGCGGGAGCCTTGGACACCATTGGCAACCTAGGCCCTTCTTC
1 GTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTC
* * *
95536596 GTGCGGGAGCCTCAGGCACCATCGGCAAACTAGGCCTTTGGTT
1 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * *
95536639 GTACGGGAGCCTTGGGCACCAT-GG-----TTGG--ATGTGCG-A
1 GTGCGGGAGCC-TCGGCACCATCGGCAACCTAGGCCCT-TG-GTC
* ** * * * * * * *
95536675 GAGCCTTGACACCATCAGCAACC-TAGGC--CATTGG-TCGT-G-C
1 GTG-CGGGA-GCC-TCGGC-ACCATCGGCAACCTAGGCCCTTGGTC
* * * * *
95536715 -AG-GAG-CCTC-GGGCACCATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGC-CTCGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
95536754 GTGCAGGAGCCTCGGGCACCATCGGTAATCTAGGCCCTCGGTC
1 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
95536797 GTGCAGGAGCCTCGGCACCATCGACAACCTAAGCCCTTGGTC
1 GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTC
* ** * *
95536839 GTGCGGGAGCCTCATGCACCATAAG-AACCTAGGCACTTAGTC
1 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTC
*** * * **
95536881 GTATAGAAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * *
95536923 GTGGGGGAGCCTCAGGCACCATCGACAACCTAGTCCCTTTGTC
1 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTC
*
95536966 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCTTGGAT-
1 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGG-TC
* *
95537009 GTAG-GAGAGCCTCGGGCACCATCGGCCACCTAGG-CCTTGGTC
1 GT-GCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * **
95537051 ATGCGAGAGCCTCAGGCATCATCGG-TACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGG-TC
* * *
95537093 GTGCGGGAGCCTTGGACACCATCGGGAACTTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTC
* * * **
95537136 GTGCGAGACCCTAGGGCACCATCGATAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCT-CGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * *
95537179 GTGAGAGAGCCTCGGGCACCATCGGC-ACATTGGTGCC-TGGAT-
1 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGG-CCCTTGG-TC
* *
95537221 GTGCGGGAGCCTCGGAAACCATCTGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTC
* *
95537264 GTGCTGGAACCTCGGGCACCATCGGCA
1 GTGCGGGAGCCTC-GGCACCATCGGCA
95537291 CCTTGGTTCC
Statistics
Matches: 695, Mismatches: 154, Indels: 114
0.72 0.16 0.12
Matches are distributed among these distances:
33 3 0.00
34 5 0.01
35 2 0.00
36 8 0.01
37 10 0.01
38 7 0.01
39 8 0.01
40 2 0.00
41 28 0.04
42 299 0.43
43 313 0.45
44 10 0.01
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.20
Consensus pattern (42 bp):
GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:95536606 original size:43 final size:43
Alignment explanation
Indices: 95536341--95536660 Score: 269
Period size: 42 Copynumber: 7.5 Consensus size: 43
95536331 GTGCCTCAGA
* *
95536341 TGTGCGGGAGCCTTGGATACCATCGGCAAACTAGGCCCTTGGT
1 TGTGCGGGAGCCTTGGACACCATCGGCAACCTAGGCCCTTGGT
* * *** *
95536384 TGTGCGGGAGCC-TCGAGCACCATCGGC-ACCTTGGTGGTTGGA
1 TGTGCGGGAGCCTTGGA-CACCATCGGCAACCTAGGCCCTTGGT
* * * *
95536426 TGTACGAGAGCCTCGG-CACCATCGGCAACCTAAGCCCTTGGT
1 TGTGCGGGAGCCTTGGACACCATCGGCAACCTAGGCCCTTGGT
* * *
95536468 CGTACGGGAGCC-TCGAGCACCATCGGC-ACCTAGGCCCTTGGT
1 TGTGCGGGAGCCTTGGA-CACCATCGGCAACCTAGGCCCTTGGT
* * * * * * ** *
95536510 CGTGCGGGAGCCTCGGGCACCATTGGC-ACGTTGGTGCTTGGA
1 TGTGCGGGAGCCTTGGACACCATCGGCAACCTAGGCCCTTGGT
* *
95536552 TGTGCGGGAGCCTTGGACACCATTGGCAACCTAGGCCCTT-CT
1 TGTGCGGGAGCCTTGGACACCATCGGCAACCTAGGCCCTTGGT
* * *
95536594 TCGTGCGGGAGCCTCAGG-CACCATCGGCAAACTAGGCCTTTGGT
1 T-GTGCGGGAGCCT-TGGACACCATCGGCAACCTAGGCCCTTGGT
* *
95536638 TGTACGGGAGCCTTGGGCACCAT
1 TGTGCGGGAGCCTTGGACACCAT
95536661 GGTTGGATGT
Statistics
Matches: 217, Mismatches: 49, Indels: 22
0.75 0.17 0.08
Matches are distributed among these distances:
41 11 0.05
42 112 0.52
43 90 0.41
44 4 0.02
ACGTcount: A:0.17, C:0.29, G:0.33, T:0.21
Consensus pattern (43 bp):
TGTGCGGGAGCCTTGGACACCATCGGCAACCTAGGCCCTTGGT
Found at i:95536616 original size:170 final size:168
Alignment explanation
Indices: 95536359--95537290 Score: 678
Period size: 170 Copynumber: 5.6 Consensus size: 168
95536349 AGCCTTGGAT
* * * ***
95536359 ACCATCGGCAAACTAGGCCCTTGGTTGTGCGGGAGCCTC-GAGCACCATCGGC-ACCTTGGTGGT
1 ACCATCGGC-ACCTAGG-CCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCT
* * * *
95536422 TGGAT-GTACGAGAGCCTC-GGCACCATCGGCAACCTAAGCCCTTGGTCGTACGGGAGCCTCGAG
63 T-GATCGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG-G
*
95536485 CACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGC
126 CACCATCGGCACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGC
* * * * * *
95536528 ACCATTGGCACGTTGGTGCTTGGAT-GTGCGGGAGCCTTGGACACCATTGGCAACCTAGGCCCTT
1 ACCATCGGCACCTAGG-CCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTT
** * * * * * *
95536592 CTTCGTGCGGGAGCCTCAGGCACCATCGGCAAACTAGGCCTTTGGTTGTACGGGAGCCTTGG--G
64 GATCGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCAC
* *
95536655 CA-C--CA--T-GG---TTGGAT-GTGCGAGAGCCT-TGAC
129 CATCGGCACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGC
* * * *
95536685 ACCATCAGCAACCTAGGCCATTGGTCGTGCAGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTT
1 ACCATCGGC-ACCTAGGCC-TTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTT
* * * * * * *
95536750 GGTCGTGCAGGAGCCTCGGGCACCATCGGTAATCTAGGCCCTCGGTCGTGCAGGAGCCTCGGCAC
64 GATCGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCAC
* * * **
95536815 CATCGACAACCTAAGCCCTTGGTCGTGCGGGAGCCTCATGC
129 CATCGGC-ACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGC
** * * *** * * * **
95536856 ACCATAAGAACCTAGGCACTTAGTCGTATAGAAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTG
1 ACCATCGGCACCTAGGC-CTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTT-
* * * *
95536920 GAT-GTGGGGGAGCCTCAGGCACCATCGACAACCTAGTCCCTTTGTCGTGCGGGAGCCTCGGGCA
64 GATCGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCA
*
95536984 CCATCGGCAACCTAGGTCCTTGGAT-GTAG-GAGAGCCTCGGGC
128 CCATCGGC-ACCTAGGCCCTTGG-TCGT-GCGAGAGCCTCGGGC
* * * * * **
95537026 ACCATCGGCCACCTAGGCCTTGGTCATGCGAGAGCCTCAGG-CATCATCGG-TACCTTGGTGCTT
1 ACCATCGG-CACCTAGGCCTTGGTCGTGCGGGAGCCTC-GGACACCATCGGCAACCTAGGCCCTT
* * * * * *
95537089 GGAT-GTGCGGGAGCCT-TGGACACCATCGGGAACTTAGGCCCTTGGTCGTGCGAGACCCTAGGG
64 -GATCGTGCGGGAGCCTCAGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCT-CGG
** *
95537152 CACCATCGATAACCTAGGCCCTTGGTCGTGAGAGAGCCTCGGGC
126 CACCATCG-GCACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGC
* * * *
95537196 ACCATCGGCACATTGGTGCC-TGGAT-GTGCGGGAGCCTCGGAAACCATCTGCAACCTAGGCCCT
1 ACCATCGGCAC-CTAG-GCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCT
* * * *
95537259 TGGTCGTGCTGGAACCTCGGGCACCATCGGCA
63 TGATCGTGCGGGAGCCTCAGGCACCATCGGCA
95537291 CCTTGGTTCC
Statistics
Matches: 600, Mismatches: 120, Indels: 84
0.75 0.15 0.10
Matches are distributed among these distances:
157 11 0.02
158 108 0.18
159 1 0.00
160 2 0.00
161 3 0.00
162 1 0.00
163 1 0.00
164 3 0.00
166 2 0.00
167 3 0.00
168 31 0.05
169 96 0.16
170 282 0.47
171 54 0.09
172 2 0.00
ACGTcount: A:0.18, C:0.30, G:0.31, T:0.20
Consensus pattern (168 bp):
ACCATCGGCACCTAGGCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGA
TCGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCA
TCGGCACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGC
Found at i:95536702 original size:115 final size:116
Alignment explanation
Indices: 95536547--95536775 Score: 316
Period size: 115 Copynumber: 2.0 Consensus size: 116
95536537 ACGTTGGTGC
* ** * * *
95536547 TTGGATGTGCGGGAGCCTTGGACACCATTGGCAACCTAGGCCCTTCTTCGTGCGGGAGCCTCAGG
1 TTGGATGTGCGAGAGCCTTGGACACCATCAGCAACCTAGGCCATTCGTCGTGCAGGAGCCTCAGG
* * * *
95536612 CACCATCGGCAAACTAGGCCTTTGGTTGTACGGGAGCCTTGGGCACCATGG
66 CACCATCGGCAAACTAGGCCCTTGGTCGTACAGGAGCCTCGGGCACCATGG
* *
95536663 TTGGATGTGCGAGAGCCTT-GACACCATCAGCAACCTAGGCCATTGGTCGTGCAGGAGCCTCGGG
1 TTGGATGTGCGAGAGCCTTGGACACCATCAGCAACCTAGGCCATTCGTCGTGCAGGAGCCTCAGG
* * *
95536727 CACCATCGGTAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGGCACCAT
66 CACCATCGGCAAACTAGGCCCTTGGTCGTACAGGAGCCTCGGGCACCAT
95536776 CGGTAATCTA
Statistics
Matches: 98, Mismatches: 15, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
115 80 0.82
116 18 0.18
ACGTcount: A:0.18, C:0.29, G:0.32, T:0.21
Consensus pattern (116 bp):
TTGGATGTGCGAGAGCCTTGGACACCATCAGCAACCTAGGCCATTCGTCGTGCAGGAGCCTCAGG
CACCATCGGCAAACTAGGCCCTTGGTCGTACAGGAGCCTCGGGCACCATGG
Found at i:95536741 original size:43 final size:43
Alignment explanation
Indices: 95536684--95537290 Score: 524
Period size: 43 Copynumber: 14.3 Consensus size: 43
95536674 AGAGCCTTGA
* *
95536684 CACCATCAGCAACCTAGGCCATTGGTCGTGCAGGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGG
*
95536727 CACCATCGGTAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGG
* * *
95536770 CACCATCGGTAATCTAGGCCCTCGGTCGTGCAGGAGCCTC-GG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGG
* * * **
95536812 CACCATCGACAACCTAAGCCCTTGGTCGTGCGGGAGCCTCATG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGG
** * * ** *
95536855 CACCATAAG-AACCTAGGCACTTAGTCGTATAGAAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGG
* ** ** *
95536897 CACCATCGGC-ACCTTGGTGCTTGGAT-GTGGGGGAGCCTCAGG
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCAGGAGCCTCGGG
* * * *
95536939 CACCATCGACAACCTAGTCCCTTTGTCGTGCGGGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGG
* *
95536982 CACCATCGGCAACCTAGGTCCTTGGAT-GTAGGA-GAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGG-TCGT-GCAGGAGCCTCGGG
* * *
95537025 CACCATCGGCCACCTAGG-CCTTGGTCATGC-GAGAGCCTCAGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCAG-GAGCCTCGGG
* * * ** * * *
95537067 CATCATCGG-TACCTTGGTGCTTGGAT-GTGCGGGAGCCTTGGA
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCAGGAGCCTCGGG
* * * *
95537109 CACCATCGGGAACTTAGGCCCTTGGTCGTGC-GAGACCCTAGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCAG-GAGCCTCGGG
**
95537152 CACCATCGATAACCTAGGCCCTTGGTCGTG-AGAGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCAG-GAGCCTCGGG
* * * * *
95537195 CACCATCGGC-ACATTGGTGCC-TGGAT-GTGCGGGAGCCTCGGA
1 CACCATCGGCAACCTAGG-CCCTTGG-TCGTGCAGGAGCCTCGGG
* * * *
95537237 AACCATCTGCAACCTAGGCCCTTGGTCGTGCTGGAACCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGG
95537280 CACCATCGGCA
1 CACCATCGGCA
95537291 CCTTGGTTCC
Statistics
Matches: 449, Mismatches: 92, Indels: 46
0.76 0.16 0.08
Matches are distributed among these distances:
41 8 0.02
42 178 0.40
43 261 0.58
44 2 0.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (43 bp):
CACCATCGGCAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGG
Found at i:95536837 original size:85 final size:86
Alignment explanation
Indices: 95536684--95537290 Score: 524
Period size: 85 Copynumber: 7.1 Consensus size: 86
95536674 AGAGCCTTGA
* * *
95536684 CACCATCAGCAACCTAGGCCATTGGTCGTGCAGGAGCCTCGGGCACCATCGGTAACCTAGGCCCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT
95536749 TGGTCGTGCAGGAGCCTCGGG
66 TGGTCGTGCAGGAGCCTCGGG
* * * * *
95536770 CACCATCGGTAATCTAGGCCCTCGGTCGTGCAGGAGCCTC-GGCACCATCGACAACCTAAGCCCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT
* **
95536834 TGGTCGTGCGGGAGCCTCATG
66 TGGTCGTGCAGGAGCCTCGGG
** * * ** * * **
95536855 CACCATAAG-AACCTAGGCACTTAGTCGTATAGAAGCCTCGGGCACCATCGGC-ACCTTGGTGCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT
** *
95536918 TGGAT-GTGGGGGAGCCTCAGG
66 TGG-TCGTGCAGGAGCCTCGGG
* * * * *
95536939 CACCATCGACAACCTAGTCCCTTTGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT
*
95537004 TGGAT-GTAGGA-GAGCCTCGGG
66 TGG-TCGT-GCAGGAGCCTCGGG
* * * * * * **
95537025 CACCATCGGCCACCTAGG-CCTTGGTCATGC-GAGAGCCTCAGGCATCATCGG-TACCTTGGTGC
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCAG-GAGCCTCGGGCACCATCGGCAACCTAGGCCC
* * *
95537087 TTGGAT-GTGCGGGAGCCTTGGA
65 TTGG-TCGTGCAGGAGCCTCGGG
* * * * **
95537109 CACCATCGGGAACTTAGGCCCTTGGTCGTGC-GAGACCCTAGGGCACCATCGATAACCTAGGCCC
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCAG-GAGCCTCGGGCACCATCGGCAACCTAGGCCC
95537173 TTGGTCGTG-AGAGAGCCTCGGG
65 TTGGTCGTGCAG-GAGCCTCGGG
* * * * ** *
95537195 CACCATCGGC-ACATTGGTGCC-TGGAT-GTGCGGGAGCCTCGGAAACCATCTGCAACCTAGGCC
1 CACCATCGGCAACCTAGG-CCCTTGG-TCGTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* *
95537257 CTTGGTCGTGCTGGAACCTCGGG
64 CTTGGTCGTGCAGGAGCCTCGGG
95537280 CACCATCGGCA
1 CACCATCGGCA
95537291 CCTTGGTTCC
Statistics
Matches: 421, Mismatches: 84, Indels: 32
0.78 0.16 0.06
Matches are distributed among these distances:
83 1 0.00
84 93 0.22
85 214 0.51
86 111 0.26
87 2 0.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (86 bp):
CACCATCGGCAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT
TGGTCGTGCAGGAGCCTCGGG
Found at i:95537231 original size:128 final size:127
Alignment explanation
Indices: 95536711--95537287 Score: 428
Period size: 128 Copynumber: 4.5 Consensus size: 127
95536701 GCCATTGGTC
* * * *
95536711 GTGCAGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGC-AGGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGA-GAACCTCGGGCACCA
** * * * * * ** *
95536775 TCGGTAATCTAGGCCCTCGGTCGTGCAG-GAGCCTC-GGCACCATCGACAACCTAAG-CCCTTGG
65 TCGACAACCTAGG-CCTTGGTCATG-AGAGAGCCTCAGGCACCATCGGC-ACATTGGTGCC-TGG
95536837 -T
126 AT
* ** * * **
95536838 CGTGCGGGAGCCTCATG-CACCATAAG-AACCTAGGCACTTAGTCGT-ATAGAAGCCTCGGGCAC
1 -GTGCGGGAGCCTC-GGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAA-CCTCGGGCAC
* * * * * * * * * *
95536900 CATCGGC-ACCTTGGTGCTTGGAT-GTGGGGGAGCCTCAGGCACCATCGACA-ACCTAGTCCCTT
63 CATCGACAACCTAGG-CCTTGG-TCATGAGAGAGCCTCAGGCACCATCGGCACA-TTGGTGCC-T
*
95536962 TG-T
124 GGAT
* * *
95536965 CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCTTGGAT-GTAG-GAGAGCCTCGGGCAC
1 -GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGT-GCGAGAACCTCGGGCAC
* * * * * * *
95537028 CATCGGCCACCTAGGCCTTGGTCATGCGAGAGCCTCAGGCATCATCGGTACCTTGGTGCTTGGAT
63 CATCGACAACCTAGGCCTTGGTCATGAGAGAGCCTCAGGCACCATCGGCACATTGGTGCCTGGAT
* * * * *
95537093 GTGCGGGAGCCTTGGACACCATCGGGAACTTAGGCCCTTGGTCGTGCGAGACCCTAGGGCACCAT
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAACCTCGGGCACCAT
* * *
95537158 CGATAACCTAGGCCCTTGGTCGTGAGAGAGCCTCGGGCACCATCGGCACATTGGTGCCTGGAT
66 CGACAACCTAGG-CCTTGGTCATGAGAGAGCCTCAGGCACCATCGGCACATTGGTGCCTGGAT
* *
95537221 GTGCGGGAGCCTCGGAAACCATCTGCAACCTAGGCCCTTGGTCGTGCTG-GAACCTCGGGCACCA
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGC-GAGAACCTCGGGCACCA
95537285 TCG
65 TCG
95537288 GCACCTTGGT
Statistics
Matches: 363, Mismatches: 65, Indels: 42
0.77 0.14 0.09
Matches are distributed among these distances:
125 1 0.00
126 27 0.07
127 141 0.39
128 182 0.50
129 12 0.03
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.20
Consensus pattern (127 bp):
GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAACCTCGGGCACCAT
CGACAACCTAGGCCTTGGTCATGAGAGAGCCTCAGGCACCATCGGCACATTGGTGCCTGGAT
Found at i:95561726 original size:58 final size:59
Alignment explanation
Indices: 95561635--95561755 Score: 154
Period size: 58 Copynumber: 2.1 Consensus size: 59
95561625 GTCCCCCCAA
* * * *
95561635 TCCCAAAAGGTAGAATTTGGATACCATTACATGTTCGGTACCCAATAATAAATGAATCG
1 TCCCAAAAGATAGAAATTAGATACCATTACATGTTCGGTACCCAACAATAAATGAATCG
* * * * *
95561694 TCCC-AAAGATAGAAATTAGATACCGTTGCATGTTCGGTACCTAACCATGAATGAATCG
1 TCCCAAAAGATAGAAATTAGATACCATTACATGTTCGGTACCCAACAATAAATGAATCG
95561752 TCCC
1 TCCC
95561756 TGTCCCTCCC
Statistics
Matches: 53, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
58 49 0.92
59 4 0.08
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.26
Consensus pattern (59 bp):
TCCCAAAAGATAGAAATTAGATACCATTACATGTTCGGTACCCAACAATAAATGAATCG
Found at i:95564237 original size:44 final size:44
Alignment explanation
Indices: 95564169--95564255 Score: 156
Period size: 44 Copynumber: 2.0 Consensus size: 44
95564159 TGCATAAACA
*
95564169 TCCTTGAACAATGTAGGCCAAAAGAACCCAGCTTGTAAAATCTG
1 TCCTAGAACAATGTAGGCCAAAAGAACCCAGCTTGTAAAATCTG
*
95564213 TCCTAGAACAATGTAGGCCAAAAGAAGCCAGCTTGTAAAATCT
1 TCCTAGAACAATGTAGGCCAAAAGAACCCAGCTTGTAAAATCT
95564256 ATGTTGCAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.38, C:0.22, G:0.18, T:0.22
Consensus pattern (44 bp):
TCCTAGAACAATGTAGGCCAAAAGAACCCAGCTTGTAAAATCTG
Found at i:95567451 original size:18 final size:18
Alignment explanation
Indices: 95567430--95567464 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
95567420 ATTGGGGTTG
95567430 ATAGATTGTGAGATGAAA
1 ATAGATTGTGAGATGAAA
95567448 ATAGATTGTGAGATGAA
1 ATAGATTGTGAGATGAA
95567465 CACATAATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.29, T:0.29
Consensus pattern (18 bp):
ATAGATTGTGAGATGAAA
Found at i:95567596 original size:43 final size:43
Alignment explanation
Indices: 95567525--95567710 Score: 214
Period size: 43 Copynumber: 4.3 Consensus size: 43
95567515 TTGGTATATG
* * *
95567525 CAATCATGCACTATGTGTGACAGTATATTTTCTTC-GATTTATC
1 CAATGATGCACTATGTGTGCCAGCATATTTTCTTCAG-TTTATC
* *
95567568 CGATGATGCACTGTGTGTGCCAGCATATTTTCTTCAGTTTATC
1 CAATGATGCACTATGTGTGCCAGCATATTTTCTTCAGTTTATC
* *
95567611 CAATGATGCACTATGTGTGCTAGTC-TATTTTCTTCAGCTTATC
1 CAATGATGCACTATGTGTGCCAG-CATATTTTCTTCAGTTTATC
* * * * ** *
95567654 TAATGATGCACTATATGTTCCAGTATAGATACTTCAGTTTATC
1 CAATGATGCACTATGTGTGCCAGCATATTTTCTTCAGTTTATC
95567697 CAATGATGCACTAT
1 CAATGATGCACTAT
95567711 ATATGCTAGT
Statistics
Matches: 121, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
43 119 0.98
44 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.40
Consensus pattern (43 bp):
CAATGATGCACTATGTGTGCCAGCATATTTTCTTCAGTTTATC
Found at i:95567689 original size:86 final size:85
Alignment explanation
Indices: 95567525--95567790 Score: 284
Period size: 86 Copynumber: 3.1 Consensus size: 85
95567515 TTGGTATATG
* * * *
95567525 CAATCATGCACTATGTGTGAC-AGTATATTTTCTTCGATTTATCCGATGATGCACTGTGTGTGCC
1 CAATGATGCACTATGTGTG-CTAGTATATTTTCTTCG-TTTATCTGATGATGCACTGTATGTTCC
* ** *
95567589 AGCATATTTTCTTCAGTTTATC
64 AGTATAGATACTTCAGTTTATC
* * * *
95567611 CAATGATGCACTATGTGTGCTAGTCTATTTTCTTCAGCTTATCTAATGATGCACTATATGTTCCA
1 CAATGATGCACTATGTGTGCTAGTATATTTTCTTC-GTTTATCTGATGATGCACTGTATGTTCCA
95567676 GTATAGATACTTCAGTTTATC
65 GTATAGATACTTCAGTTTATC
* * * ** * * * *
95567697 CAATGATGCACTATATATGCTAGTGTAGATACTTTGGTTTATATGATGATGCACTGTAT-TTGCT
1 CAATGATGCACTATGTGTGCTAGTATATTTTC-TTCGTTTATCTGATGATGCACTGTATGTT-CC
95567761 AGTATAGATACTTCAGTTTATC
64 AGTATAGATACTTCAGTTTATC
95567783 CAATGATG
1 CAATGATG
95567791 AGATGCTTCA
Statistics
Matches: 152, Mismatches: 24, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
85 3 0.02
86 146 0.96
87 3 0.02
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (85 bp):
CAATGATGCACTATGTGTGCTAGTATATTTTCTTCGTTTATCTGATGATGCACTGTATGTTCCAG
TATAGATACTTCAGTTTATC
Found at i:95567711 original size:43 final size:43
Alignment explanation
Indices: 95567562--95567790 Score: 224
Period size: 43 Copynumber: 5.3 Consensus size: 43
95567552 TTTTCTTCGA
* * * * * ** *
95567562 TTTATCCGATGATGCACTGTGTGTGCCAGCATATTTTCTTCAG
1 TTTATCCAATGATGCACTATATGTGCTAGTATAGATACTTCAG
* * ** *
95567605 TTTATCCAATGATGCACTATGTGTGCTAGTCTATTTTCTTCAG
1 TTTATCCAATGATGCACTATATGTGCTAGTATAGATACTTCAG
* * * *
95567648 CTTATCTAATGATGCACTATATGTTCCAGTATAGATACTTCAG
1 TTTATCCAATGATGCACTATATGTGCTAGTATAGATACTTCAG
* * **
95567691 TTTATCCAATGATGCACTATATATGCTAGTGTAGATACTTTGG
1 TTTATCCAATGATGCACTATATGTGCTAGTATAGATACTTCAG
*** * *
95567734 TTTATATGATGATGCACTGTATTTGCTAGTATAGATACTTCAG
1 TTTATCCAATGATGCACTATATGTGCTAGTATAGATACTTCAG
95567777 TTTATCCAATGATG
1 TTTATCCAATGATG
95567791 AGATGCTTCA
Statistics
Matches: 153, Mismatches: 33, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 153 1.00
ACGTcount: A:0.25, C:0.17, G:0.17, T:0.41
Consensus pattern (43 bp):
TTTATCCAATGATGCACTATATGTGCTAGTATAGATACTTCAG
Found at i:95567800 original size:25 final size:25
Alignment explanation
Indices: 95567766--95567815 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
95567756 TTGCTAGTAT
95567766 AGATACTTCAGTTTATCCAATGATG
1 AGATACTTCAGTTTATCCAATGATG
*
95567791 AGATGCTTCAGTTTATCCAATGATG
1 AGATACTTCAGTTTATCCAATGATG
95567816 CACTGTATGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (25 bp):
AGATACTTCAGTTTATCCAATGATG
Found at i:95567860 original size:43 final size:43
Alignment explanation
Indices: 95567791--95567912 Score: 165
Period size: 43 Copynumber: 2.8 Consensus size: 43
95567781 TCCAATGATG
* * * * *
95567791 AGATGCTTCAGTTTATCCAATGATGCACTGTATGTGCCAGTAT
1 AGATACTTCAATTTATCTAATTATGCATTGTATGTGCCAGTAT
* *
95567834 AGATATTTCAGA-TTATCTGATTATGCATTGTATGTGCCAGTAT
1 AGATACTTCA-ATTTATCTAATTATGCATTGTATGTGCCAGTAT
95567877 AGATACTTCAATTTATCTAATTATGCATTGTATGTG
1 AGATACTTCAATTTATCTAATTATGCATTGTATGTG
95567913 TTAGGATAAT
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
42 1 0.01
43 67 0.99
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.40
Consensus pattern (43 bp):
AGATACTTCAATTTATCTAATTATGCATTGTATGTGCCAGTAT
Found at i:95567879 original size:111 final size:111
Alignment explanation
Indices: 95567680--95567893 Score: 295
Period size: 111 Copynumber: 1.9 Consensus size: 111
95567670 GTTCCAGTAT
* * * *
95567680 AGATACTTCAGTTTATCCAATGATGCACTATATATGCTAGTGTAGATACTTTGGTTTATATGATG
1 AGATACTTCAGTTTATCCAATGATGCACTATATATGCCAGTATAGATACTTTAGATTATATGATG
* * *
95567745 ATGCACTGTATTTGCTAGTATAGATACTTCAGTTTATCCAATGATG
66 ATGCACTGTATGTGCCAGTATAGATACTTCAATTTATCCAATGATG
* * * *
95567791 AGATGCTTCAGTTTATCCAATGATGCACTGTATGTGCCAGTATAGATA-TTTCAGATTATCTGAT
1 AGATACTTCAGTTTATCCAATGATGCACTATATATGCCAGTATAGATACTTT-AGATTATATGAT
* *
95567855 TATGCATTGTATGTGCCAGTATAGATACTTCAATTTATC
65 GATGCACTGTATGTGCCAGTATAGATACTTCAATTTATC
95567894 TAATTATGCA
Statistics
Matches: 89, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
110 3 0.03
111 86 0.97
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (111 bp):
AGATACTTCAGTTTATCCAATGATGCACTATATATGCCAGTATAGATACTTTAGATTATATGATG
ATGCACTGTATGTGCCAGTATAGATACTTCAATTTATCCAATGATG
Found at i:95567943 original size:154 final size:154
Alignment explanation
Indices: 95567642--95567920 Score: 333
Period size: 154 Copynumber: 1.8 Consensus size: 154
95567632 AGTCTATTTT
* * *
95567642 CTTCAGCTTATCTAATGATGCACTATATGTTCCAGTATAGATACTTCAGTTTATCCAATGATGCA
1 CTTCAGCTTATCCAATGATGCACTATATGTGCCAGTATAGATACTTCAGATTATCCAATGATGCA
* * *** * * *
95567707 CTATATATGCTAGTGTAGATACTTTGGTTTATATGATGATGCACTGTATTTGCTAGTATAGATAC
66 CTATATATGCCAGTATAGATACTTCAATTTATATAATGATGCACTGTATGTGCTAGGATAGATAC
*
95567772 TTCAGTTTATCCAATGATGAGATG
131 TTCAGTTCATCCAATGATGAGATG
* * * ** *
95567796 CTTCAGTTTATCCAATGATGCACTGTATGTGCCAGTATAGATATTTCAGATTATCTGATTATGCA
1 CTTCAGCTTATCCAATGATGCACTATATGTGCCAGTATAGATACTTCAGATTATCCAATGATGCA
* * * * * * *
95567861 TTGTATGTGCCAGTATAGATACTTCAATTTATCTAATTATGCATTGTATGTGTTAGGATA
66 CTATATATGCCAGTATAGATACTTCAATTTATATAATGATGCACTGTATGTGCTAGGATA
95567921 ATTGCGTTGA
Statistics
Matches: 101, Mismatches: 24, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
154 101 1.00
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.40
Consensus pattern (154 bp):
CTTCAGCTTATCCAATGATGCACTATATGTGCCAGTATAGATACTTCAGATTATCCAATGATGCA
CTATATATGCCAGTATAGATACTTCAATTTATATAATGATGCACTGTATGTGCTAGGATAGATAC
TTCAGTTCATCCAATGATGAGATG
Found at i:95572216 original size:47 final size:47
Alignment explanation
Indices: 95572118--95572245 Score: 166
Period size: 47 Copynumber: 2.7 Consensus size: 47
95572108 AATCGATAAG
* ** *
95572118 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCCCGGAG
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCAAAA
* *
95572165 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCCTCTCAAAA
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCAAAA
* * * *
95572212 TACCTATATCAAGGCCTGTAGCCAAATCTAGGTA
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTA
95572246 TTATTCCACC
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (47 bp):
TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCAAAA
Found at i:95575680 original size:28 final size:28
Alignment explanation
Indices: 95575649--95575704 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
95575639 TTTCTAATTA
* * *
95575649 AATTCAATTTTAATCCTTTTTATATTTT
1 AATTCAATTTAAATACTTTATATATTTT
* *
95575677 AATTTACTTTAAATACTTTATATATTTT
1 AATTCAATTTAAATACTTTATATATTTT
95575705 TTNNNNNNNN
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.59
Consensus pattern (28 bp):
AATTCAATTTAAATACTTTATATATTTT
Found at i:95584349 original size:26 final size:26
Alignment explanation
Indices: 95584320--95584371 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
95584310 ATTGCCTCCA
95584320 CCACAAACTCAAAAAGAAGTTTGAGG
1 CCACAAACTCAAAAAGAAGTTTGAGG
95584346 CCACAAACTCAAAAAGAAGTTTGAGG
1 CCACAAACTCAAAAAGAAGTTTGAGG
95584372 ATTCCTAGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.46, C:0.19, G:0.19, T:0.15
Consensus pattern (26 bp):
CCACAAACTCAAAAAGAAGTTTGAGG
Found at i:95586820 original size:19 final size:19
Alignment explanation
Indices: 95586796--95586834 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
95586786 TCAAAAATAA
*
95586796 AAAAAATAAAAAAAGGGAG
1 AAAAAAGAAAAAAAGGGAG
* *
95586815 AAAAAAGAGAAAAATGGAG
1 AAAAAAGAAAAAAAGGGAG
95586834 A
1 A
95586835 GGCCAAGGAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.00, G:0.23, T:0.05
Consensus pattern (19 bp):
AAAAAAGAAAAAAAGGGAG
Found at i:95588072 original size:206 final size:206
Alignment explanation
Indices: 95587718--95588101 Score: 639
Period size: 206 Copynumber: 1.9 Consensus size: 206
95587708 GGCTGAAGCA
* * * * *
95587718 AGACACATAGCAGATCTAGCCTTCATATGTTTATATTGAAGCAGATCCAAGATGGTTTGGCATCC
1 AGACACATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCAAGATGGTTTGGCATCC
95587783 TTGTGCTTACAAGGAACAAATCAAAATCATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCA
66 TTGTGCTTACAAGGAACAAATCAAAATCATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCA
95587848 AATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATT
131 AATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATT
95587913 CGACAGAGGGC
196 CGACAGAGGGC
* *
95587924 AGACACATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCTAGATGGTTTGGTATCC
1 AGACACATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCAAGATGGTTTGGCATCC
* *
95587989 TTGTGCTTACAAGGAGCAAATCAAAGA-CATAGCTGATTTGG-TTTC-CGTGTGCTTACGCTGAA
66 TTGTGCTTACAAGGAACAAATCAAA-ATCATAGCTGATTTGGCTTTCAC--GTGCTTACGATGAA
95588051 GCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
128 GCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
95588102 AAACAGATTT
Statistics
Matches: 166, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
204 1 0.01
205 4 0.02
206 160 0.96
207 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (206 bp):
AGACACATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCAAGATGGTTTGGCATCC
TTGTGCTTACAAGGAACAAATCAAAATCATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCA
AATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATT
CGACAGAGGGC
Found at i:95589756 original size:28 final size:28
Alignment explanation
Indices: 95589725--95589780 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
95589715 TTTCTAATTA
* * *
95589725 AATTCAATTTTAATCCTTTTTATATTTT
1 AATTCAATTTAAATACTTTATATATTTT
* *
95589753 AATTTACTTTAAATACTTTATATATTTT
1 AATTCAATTTAAATACTTTATATATTTT
95589781 TTATAAATAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.59
Consensus pattern (28 bp):
AATTCAATTTAAATACTTTATATATTTT
Found at i:95589887 original size:12 final size:11
Alignment explanation
Indices: 95589871--95589900 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
95589861 GTATATTTTA
95589871 TTTTATATATT
1 TTTTATATATT
95589882 TCTTTATATATT
1 T-TTTATATATT
95589894 TTTTATA
1 TTTTATA
95589901 AAATTGTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (11 bp):
TTTTATATATT
Found at i:95590339 original size:14 final size:14
Alignment explanation
Indices: 95590320--95590349 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
95590310 TCTATCTTTC
*
95590320 TTATATATTTTTTA
1 TTATATATTATTTA
95590334 TTATATATTATTTA
1 TTATATATTATTTA
95590348 TT
1 TT
95590350 TTGTTTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
TTATATATTATTTA
Found at i:95590425 original size:21 final size:20
Alignment explanation
Indices: 95590398--95590449 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 20
95590388 TGCAAAATAC
*
95590398 TTATTATATTCTTCTTAT-TT
1 TTATTATATT-TCCTTATATT
95590418 TATATTATATTTCCTTATATT
1 T-TATTATATTTCCTTATATT
95590439 TTATTCATATT
1 TTATT-ATATT
95590450 ATATTATTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
20 11 0.39
21 17 0.61
ACGTcount: A:0.25, C:0.10, G:0.00, T:0.65
Consensus pattern (20 bp):
TTATTATATTTCCTTATATT
Found at i:95591538 original size:16 final size:17
Alignment explanation
Indices: 95591517--95591551 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
95591507 CTTTGGGAGA
95591517 GTCACAC-GCCCGTGTG
1 GTCACACAGCCCGTGTG
95591533 GTCACACATGCCCGTGTG
1 GTCACACA-GCCCGTGTG
95591551 G
1 G
95591552 CTTGAGACAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
18 10 0.59
ACGTcount: A:0.14, C:0.34, G:0.31, T:0.20
Consensus pattern (17 bp):
GTCACACAGCCCGTGTG
Found at i:95592482 original size:131 final size:130
Alignment explanation
Indices: 95592196--95592545 Score: 344
Period size: 131 Copynumber: 2.7 Consensus size: 130
95592186 GAAAAATACA
** * * *
95592196 AGTGAAATTCCAAAGAGACATTCGATTATTTTGAACAAACGGGAAATTGCAACCCAGCACAATAG
1 AGTGAAATTCTGAAGA-ATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATAG
* * * * * *
95592261 GGCACT-ATTCCCCGAATCGCCAAACATCAAATATTTCTTTCATTTTAAAGGGTTTTTAGAAAAC
65 GGCA-TGATT-CCCGAATCGTCAAACACCAAATACTGCCTTCATTTTAAAGGATTTTTAGAAAAC
*
95592325 GTG
128 ATG
* * **
95592328 AGTGAAATTCTGAAGAATATTCGATTGTTTTGAACAAATGAGAAATCACAACCCAGCACGATAGG
1 AGTGAAATTCTGAAGAATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATAGG
* * * * * * *
95592393 GCATGATTCCCGAATTGTCAAACACCGAGTACTGCCTTCGTTTTAAAGGATTTTTGGAAGATATG
66 GCATGATTCCCGAATCGTCAAACACCAAATACTGCCTTCATTTTAAAGGATTTTTAGAAAACATG
* * * * * * *
95592458 GGTGAAATTTTGAAGGGACT-TTCGATTACTTTGAGCAAACGAGAAATTGCAACCCAACACGTTA
1 AGTGAAATTCTGAA--GAATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATA
* *
95592522 GAGCACGATTCCACGAATCGTCAA
64 GGGCATGATTCC-CGAATCGTCAA
95592546 TTATCGAATA
Statistics
Matches: 177, Mismatches: 37, Indels: 8
0.80 0.17 0.04
Matches are distributed among these distances:
130 56 0.32
131 94 0.53
132 27 0.15
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (130 bp):
AGTGAAATTCTGAAGAATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATAGG
GCATGATTCCCGAATCGTCAAACACCAAATACTGCCTTCATTTTAAAGGATTTTTAGAAAACATG
Found at i:95592883 original size:18 final size:18
Alignment explanation
Indices: 95592846--95592885 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
95592836 ATGAATGAAT
* **
95592846 AATATAACAAGACATTAC
1 AATAAAACAAGACAAAAC
95592864 AATAAAACAAGACAAAAC
1 AATAAAACAAGACAAAAC
95592882 AATA
1 AATA
95592886 CACACGATAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.65, C:0.15, G:0.05, T:0.15
Consensus pattern (18 bp):
AATAAAACAAGACAAAAC
Found at i:95595728 original size:16 final size:16
Alignment explanation
Indices: 95595707--95595737 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
95595697 ATATACATTT
95595707 ATTCATTCATATCAAA
1 ATTCATTCATATCAAA
*
95595723 ATTCATTCATTTCAA
1 ATTCATTCATATCAA
95595738 TCATATTGTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.19, G:0.00, T:0.42
Consensus pattern (16 bp):
ATTCATTCATATCAAA
Found at i:95599992 original size:22 final size:23
Alignment explanation
Indices: 95599962--95600015 Score: 67
Period size: 22 Copynumber: 2.4 Consensus size: 23
95599952 TGGACTTTTA
95599962 TTGGTTTTTATCTTA-ATTTATTT
1 TTGGTTTTTAT-TTATATTTATTT
* *
95599985 TT-GTTTTTGTTTATTTTTATTT
1 TTGGTTTTTATTTATATTTATTT
95600007 TTGGTTTTT
1 TTGGTTTTT
95600016 GGTTTTTCTC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 3 0.11
22 16 0.59
23 8 0.30
ACGTcount: A:0.11, C:0.02, G:0.11, T:0.76
Consensus pattern (23 bp):
TTGGTTTTTATTTATATTTATTT
Found at i:95599997 original size:16 final size:16
Alignment explanation
Indices: 95599978--95600009 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
95599968 TTTATCTTAA
*
95599978 TTTATTTTTGTTTTTG
1 TTTATTTTTATTTTTG
95599994 TTTATTTTTATTTTTG
1 TTTATTTTTATTTTTG
95600010 GTTTTTGGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.00, G:0.09, T:0.81
Consensus pattern (16 bp):
TTTATTTTTATTTTTG
Found at i:95600662 original size:176 final size:175
Alignment explanation
Indices: 95600360--95600709 Score: 411
Period size: 176 Copynumber: 2.0 Consensus size: 175
95600350 CTCCATTGCC
*
95600360 GTCATCTCCAATCTGCCCCGCTACTGCTTAGGGAAATAAGATATTCAATCTTCAGTCTGCTTCCT
1 GTCATCTCCAATCTGCCCCGCTACTGCTTAGGGAAATAAGATATTCAATCTTCAATCTGCTTCCT
* ** ** * * *
95600425 TGCTATCTCAGGAAGATAAGACTTGTATATGAGCCTACTCCATTGCAACTTCAAGGAGATAAGGC
66 TGCTACCTCAAAAAGATAAGACTTCCATATCAACCTACTCCATTGCAACCTCAAGGAGATAAGGC
* * **
95600490 TGGTAACTTAAATCTGCTCCATTGCCGGTACATAGAGATAAGATTT
131 TAGT-ACTAAAATCTGCTCCATTGCCAATACATAGAGATAAGATTT
* * * * *
95600536 GTCATCTCCGATCTGCTCCGCTACTGCTTA-GGAAGATAAGATCTTCAATCTTCAATTTGCTTTC
1 GTCATCTCCAATCTGCCCCGCTACTGCTTAGGGAA-ATAAGATATTCAATCTTCAATCTGCTTCC
* *
95600600 TTGCTACCTCAAAAAGATAAGAC-TCCATCTTCAACCTACTCTC-TTGCTACCTC-AGAGAGATA
65 TTGCTACCTCAAAAAGATAAGACTTCCAT-ATCAACCTACTC-CATTGCAACCTCAAG-GAGATA
** * *
95600662 AGGCTAGTGGTAAAATTTGCTCTATTGCCAATACATAGAGATAAGATT
127 AGGCTAGTACTAAAATCTGCTCCATTGCCAATACATAGAGATAAGATT
95600710 CACCATTTTC
Statistics
Matches: 146, Mismatches: 24, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
175 42 0.29
176 103 0.71
177 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (175 bp):
GTCATCTCCAATCTGCCCCGCTACTGCTTAGGGAAATAAGATATTCAATCTTCAATCTGCTTCCT
TGCTACCTCAAAAAGATAAGACTTCCATATCAACCTACTCCATTGCAACCTCAAGGAGATAAGGC
TAGTACTAAAATCTGCTCCATTGCCAATACATAGAGATAAGATTT
Found at i:95602025 original size:54 final size:53
Alignment explanation
Indices: 95601882--95602041 Score: 180
Period size: 53 Copynumber: 3.0 Consensus size: 53
95601872 TCTCTTTTTA
* ** *
95601882 TTTCTTTTTTATTATTGAGTCTCAAAGCGCCCTTTGCGCATTTTCACTTTGGGCC
1 TTTCATTTTTA-T-TTGAGTCTCAAAGCGCCCTTTGCGGGTTTTCACTTTGGCCC
*
95601937 TTTCCATTTTTATTTG-GTCTCAAAGTGCCCTTTGCGGGTTTTCACTTTGGCCC
1 TTT-CATTTTTATTTGAGTCTCAAAGCGCCCTTTGCGGGTTTTCACTTTGGCCC
* * * *
95601990 TTT-TTTTTTTTTTGAAAGTCTCAAAGCGCCCTTTGCAGGTTTTCATTTTGGC
1 TTTCATTTTTATTTG--AGTCTCAAAGCGCCCTTTGCGGGTTTTCACTTTGGC
95602042 TTCCTTCCCT
Statistics
Matches: 91, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
51 9 0.10
53 36 0.40
54 35 0.38
55 4 0.04
56 7 0.08
ACGTcount: A:0.14, C:0.22, G:0.17, T:0.47
Consensus pattern (53 bp):
TTTCATTTTTATTTGAGTCTCAAAGCGCCCTTTGCGGGTTTTCACTTTGGCCC
Found at i:95613467 original size:231 final size:231
Alignment explanation
Indices: 95613060--95613742 Score: 1244
Period size: 231 Copynumber: 3.0 Consensus size: 231
95613050 ACACTTTTAA
95613060 AATT-ATGATGAATTAATGGACACATAATATAAGTTGACAAGTTTGTATAAAAACTAGGGATATA
1 AATTAATGATGAATTAATGGACACATAATATAAGTTGACAAGTTTGTATAAAAACTAGGGATATA
*
95613124 CAATTATTTGAAATAAATATTGTAGAATAAAACATTTGAATTGAATAATATGCAAAATATTTTAA
66 TAATTATTTGAAATAAATATTGTAGAATAAAACATTTGAATTGAATAATATGCAAAATATTTTAA
*
95613189 GCACAAATTCATTTAAAAATTTACATCATGCATGATAGCTTAAATAACATACAAATATAAAAGAA
131 GCACAAATTCATTTAAAAATTGACATCATGCATGATAGCTTAAATAACATACAAATATAAAAGAA
95613254 TAATAGAACACATGATAAGATATAATTTATAAAGAG
196 TAATAGAACACATGATAAGATATAATTTATAAAGAG
95613290 AATTAATGATGAATTAATGGACACATAATATAAGTTGACAAGTTTGTATAAAAACTAGGGATATA
1 AATTAATGATGAATTAATGGACACATAATATAAGTTGACAAGTTTGTATAAAAACTAGGGATATA
95613355 TAATTATTTGAAATAAATATTGTAGAATAAAACATTTGAATTGAATAATATGCAAAATATTTTAA
66 TAATTATTTGAAATAAATATTGTAGAATAAAACATTTGAATTGAATAATATGCAAAATATTTTAA
95613420 GCACAAATTCATTTAAAAATTGACATCATGCATGATAGCTTAAATAACATACAAATATAAAAGAA
131 GCACAAATTCATTTAAAAATTGACATCATGCATGATAGCTTAAATAACATACAAATATAAAAGAA
95613485 TAATAGAACACATGATAAGATATAATTTATAAAGAG
196 TAATAGAACACATGATAAGATATAATTTATAAAGAG
95613521 AATTAATGATGAATTAATGGACACATAATATAAGTTGACAAGTTTGTATAAAAACTAGGGATATA
1 AATTAATGATGAATTAATGGACACATAATATAAGTTGACAAGTTTGTATAAAAACTAGGGATATA
95613586 TAATTATTTGAAATAAATATTGTAGAATAAAACATTTGAATTGAATAATATGCAAAATATTTTAA
66 TAATTATTTGAAATAAATATTGTAGAATAAAACATTTGAATTGAATAATATGCAAAATATTTTAA
* * * * * *
95613651 ACACAACTTTATTTAAAAATTGACAAT-GTGCATGATAGCTTAAATAATATATAAAATATAAAAG
131 GCACAAATTCATTTAAAAATTGAC-ATCATGCATGATAGCTTAAATAACATA-CAAATATAAAAG
* *
95613715 AATAATAAAACACATGATAAAATATAAT
194 AATAATAGAACACATGATAAGATATAAT
95613743 GTACATAATG
Statistics
Matches: 440, Mismatches: 10, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
230 4 0.01
231 397 0.90
232 39 0.09
ACGTcount: A:0.50, C:0.07, G:0.12, T:0.32
Consensus pattern (231 bp):
AATTAATGATGAATTAATGGACACATAATATAAGTTGACAAGTTTGTATAAAAACTAGGGATATA
TAATTATTTGAAATAAATATTGTAGAATAAAACATTTGAATTGAATAATATGCAAAATATTTTAA
GCACAAATTCATTTAAAAATTGACATCATGCATGATAGCTTAAATAACATACAAATATAAAAGAA
TAATAGAACACATGATAAGATATAATTTATAAAGAG
Found at i:95614744 original size:16 final size:16
Alignment explanation
Indices: 95614725--95614756 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
95614715 TTTATCATAA
*
95614725 TTTATTTTTGTTTTTG
1 TTTATTTTGGTTTTTG
95614741 TTTATTTTGGTTTTTG
1 TTTATTTTGGTTTTTG
95614757 GTTTTTCTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.06, C:0.00, G:0.16, T:0.78
Consensus pattern (16 bp):
TTTATTTTGGTTTTTG
Found at i:95617269 original size:279 final size:279
Alignment explanation
Indices: 95616769--95617326 Score: 992
Period size: 279 Copynumber: 2.0 Consensus size: 279
95616759 AAATATCACG
*
95616769 AATATCATGAATACTAATACCCCCATCCTTTTAGGCTAACACAAATTCTTCCACGGGAGTATCGC
1 AATATCATGAATACTAATACCCCCATCCTTTTAGGCTAACACAAATTCTTCCACAGGAGTATCGC
* *
95616834 CCAATATTTTCTTCTTTCCCTTCCAGACCAACAAATTCTGCTTATCTTTGATAGAAGCTCCTCGA
66 CCAATATTTTCTTCTTTCCCTTCCAGACCAACAAATTCTGCCTATCTTTGATAGAAGCTCCGCGA
**
95616899 TCACAATCCTAATTGTCCAAACCTACTTGTAATCTTAAATTTTCCAAAGTATGTTGTGTTTGTAA
131 TCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAA
* * *
95616964 TGCCTTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCTGGTGAAAGCTAGGAGTT
196 CGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTT
*
95617029 AATCGGGTTTACTAGTCAT
261 AATCGGGTTTACTACTCAT
* *
95617048 AATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCATAGGAGTATCGC
1 AATATCATGAATACTAATACCCCCATCCTTTTAGGCTAACACAAATTCTTCCACAGGAGTATCGC
*
95617113 CCAATATTTTCTTCTTTCCTTTCCAGACC-ACAAAATTCTGCCTATCTTTGATAGAAGCTCCGCG
66 CCAATATTTTCTTCTTTCCCTTCCAGACCAAC-AAATTCTGCCTATCTTTGATAGAAGCTCCGCG
95617177 ATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTA
130 ATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTA
95617242 ACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGT
195 ACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGT
95617307 TAATCGGGTTTACTACTCAT
260 TAATCGGGTTTACTACTCAT
95617327 TTGTTTAAAA
Statistics
Matches: 266, Mismatches: 12, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
278 2 0.01
279 264 0.99
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.34
Consensus pattern (279 bp):
AATATCATGAATACTAATACCCCCATCCTTTTAGGCTAACACAAATTCTTCCACAGGAGTATCGC
CCAATATTTTCTTCTTTCCCTTCCAGACCAACAAATTCTGCCTATCTTTGATAGAAGCTCCGCGA
TCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAA
CGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTT
AATCGGGTTTACTACTCAT
Found at i:95617913 original size:791 final size:789
Alignment explanation
Indices: 95616390--95617838 Score: 2353
Period size: 791 Copynumber: 1.8 Consensus size: 789
95616380 ACCCTTTGTC
* *
95616390 CAATCCTCATGGTCAAAACTTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTACGGC
1 CAATCCTAATGGTCAAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTACGGC
95616455 CATAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAATTAAA
66 CATAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAATTAAA
*
95616520 CGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAAT
131 CGGGTTTACTACTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAAT
* ** * *
95616585 TATATTCTGGAAGATAAAAATATTTTTAGCGAAATCAATTTTATGGTTTTAAATATTTTTTGGTT
196 AATATTCCAGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTT
* * *
95616650 AAAATAAATATTTTATTGAAAAATAAATTAAATGGGGTTTCATTGAGAGAAGTTACAATATTAAC
261 AAAATAAATAATTTATTGAAAAATAAATTAAATGGGGTTTAATTGAAAGAAGTTACAATATTAAC
* *
95616715 TAAATAGGTATATAATATTCCAAAAAATAAAAATATTTTTAAAAAAATATCACGAATATCATGAA
326 AAAATAGGTATATAATATTCCAAAAAAGAAAAATATTTTTAAAAAAATATCACGAATATCATGAA
* *
95616780 TACTAATACCCCCATCCTTTTAGGCTAACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTC
391 TACTAATACCCCCATCCTTTTAAGCTAACACAAATTCTTCCACGGGAGTATCACCCAATATTTTC
* * *
95616845 TTCTTTCCCTTCCAGACCAACAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTA
456 CTCTTTCCATTCCAGACCAACAAATTCTACTTATCTTTGATAGAAGCTCCTCGATCACAATCCTA
** * *
95616910 ATTGTCCAAACCTACTTGTAATCTTAAATTTTCCAAAGTATGTTGTGTTTGTAATGCCTTAAAAA
521 ATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAGTATGTTGTGTTTGGAATGCCCTAAAAA
* * * *
95616975 TAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCTGGTGAAAGCTAGGAGTTAATCGGGTTTA
586 TAGGTCTACAAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAATTAAACGGGTTTA
* ** * * * * *** *
95617040 CTAGTCATAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCATAGG
651 CTAGTCATAATATAAAAAAAACTAATACCCCAATCATTTAAAAATGA-ACAAATTATTCCATAGG
***
95617105 AGTATCGCCCAATATTTTCTTCTTTCCTTTCCAGACCACAAAATTCTGCCTATCTTTGATAGAAG
715 AGTATC-AAAAATATTTTCTTCTTTCCTTTCCAGACCACAAAATTCTGCCTATCTTTGATAGAAG
95617170 CTCCGCGATCA
779 CTCCGCGATCA
* *
95617181 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAAC-G
1 CAATCCTAATGGTCAAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGT-ACGG
* *
95617245 CCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAA
65 CCATAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAATTAA
* *
95617310 TCGGGTTTACTACTCATTTGTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAA
130 ACGGGTTTACTACTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAA
*
95617375 TAATATTCCAGAAAATAAAAATATTTTTAGAGAAATTAATTTTATGGTTTTAAATA-TTTTTGGT
195 TAATATTCCAGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGT
95617439 TAAAATAAATAATTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAAAGAAGTTACAATATTA
260 TAAAATAAATAATTTATTGAAAAATAAATT-AAATGGGGTTTAATTGAAAGAAGTTACAATATTA
* * *
95617504 ACAAAATAGGTATATAATATTTCGAAAAAGAAAAATATTTTTACAAAAATATCACGAATATCATG
324 ACAAAATAGGTATATAATATTCCAAAAAAGAAAAATATTTTTAAAAAAATATCACGAATATCATG
* * * *
95617569 AATACTACTACCCCCATCCTTTTAAGTTGATACAAATTCTTCCACGGGAGTATCACCCAATATTT
389 AATACTAATACCCCCATCCTTTTAAGCTAACACAAATTCTTCCACGGGAGTATCACCCAATATTT
*
95617634 TCCTCTTTCCATTCCAGACCACCAAATTCTACTTATCTTTGATAGAAGCTCCTCGATCACAATCC
454 TCCTCTTTCCATTCCAGACCAACAAATTCTACTTATCTTTGATAGAAGCTCCTCGATCACAATCC
95617699 TAATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAGTATGTTGTGTTTGGAATGCCCTAAA
519 TAATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAGTATGTTGTGTTTGGAATGCCCTAAA
95617764 AATAGGTCTACAAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAATTAAACGGGTT
584 AATAGGTCTACAAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAATTAAACGGGTT
95617829 TACTAGTCAT
649 TACTAGTCAT
95617839 TTCTTTAAAA
Statistics
Matches: 615, Mismatches: 41, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
790 37 0.06
791 576 0.94
792 2 0.00
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (789 bp):
CAATCCTAATGGTCAAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTACGGC
CATAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAATTAAA
CGGGTTTACTACTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAAT
AATATTCCAGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTT
AAAATAAATAATTTATTGAAAAATAAATTAAATGGGGTTTAATTGAAAGAAGTTACAATATTAAC
AAAATAGGTATATAATATTCCAAAAAAGAAAAATATTTTTAAAAAAATATCACGAATATCATGAA
TACTAATACCCCCATCCTTTTAAGCTAACACAAATTCTTCCACGGGAGTATCACCCAATATTTTC
CTCTTTCCATTCCAGACCAACAAATTCTACTTATCTTTGATAGAAGCTCCTCGATCACAATCCTA
ATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAGTATGTTGTGTTTGGAATGCCCTAAAAA
TAGGTCTACAAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAATTAAACGGGTTTA
CTAGTCATAATATAAAAAAAACTAATACCCCAATCATTTAAAAATGAACAAATTATTCCATAGGA
GTATCAAAAATATTTTCTTCTTTCCTTTCCAGACCACAAAATTCTGCCTATCTTTGATAGAAGCT
CCGCGATCA
Found at i:95619495 original size:20 final size:19
Alignment explanation
Indices: 95619470--95619513 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
95619460 TTTATGCTTT
95619470 TAAATATTTT-TTGGTAAAAA
1 TAAATATTTTATT-G-AAAAA
95619490 TAAATATTTTATTGAAAAA
1 TAAATATTTTATTGAAAAA
95619509 TAAAT
1 TAAAT
95619514 TAAAATGGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 10 0.43
20 11 0.48
21 2 0.09
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (19 bp):
TAAATATTTTATTGAAAAA
Found at i:95619499 original size:19 final size:20
Alignment explanation
Indices: 95619470--95619513 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
95619460 TTTATGCTTT
95619470 TAAATATTTTT-TGGTAAAAA
1 TAAATATTTTTATGG-AAAAA
*
95619490 TAAATA-TTTTATTGAAAAA
1 TAAATATTTTTATGGAAAAA
95619509 TAAAT
1 TAAAT
95619514 TAAAATGGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (20 bp):
TAAATATTTTTATGGAAAAA
Found at i:95619655 original size:511 final size:512
Alignment explanation
Indices: 95617048--95619967 Score: 4782
Period size: 512 Copynumber: 5.7 Consensus size: 512
95617038 TACTAGTCAT
**
95617048 AATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCATAGGAGTATCGC
1 AATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGC
* * * *
95617113 CCAATATTTTCTTCTTTCCTTTCCAGACCACAAAATTCTGCCTATCTTTGATAGAAGCTCCGCGA
66 CCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGA
95617178 TCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAA
131 TCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAA
95617243 CGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTT
196 CGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTT
*
95617308 AATCGGGTTTACTACTCATTTGTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTA
261 AATCGGGTTTACTACTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTA
* *
95617373 AATAATATTCCAGAAAATAAAAATATTTTTAGAGAAATTAATTTTATGGTTTTAAATA-TTTTTG
326 AATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTG
* *
95617437 GTTAAAATAAATAATTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAAAGAAGTTACAATAT
391 GTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATAT
* * *
95617502 TAACAAAATAGGTATATAATATTTC-GAAAAAGAAAAATATTTTTACAAAAATATCACG
456 TAACTAAATAGGTATATAATA-TTCAG-AAAATAAAAATATTTTTAGAAAAATATCACG
* * * * *
95617560 AATATCATGAATACTACTACCCCCATCCTTTTAAGTTGATACAAATTCTTCCACGGGAGTATCAC
1 AATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGC
* *
95617625 CCAATATTTTCCTCTTTCCATTCCAGACCACCAAATTCTACTTATCTTTGATAGAAGCTCCTCGA
66 CCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGA
* *
95617690 TCACAATCCTAATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAGTATGTTGTGTTTGGAA
131 TCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAA
* * *
95617755 TGCCCTAAAAATAGGTCTACAAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAATT
196 CGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTT
* *
95617820 AAACGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTA
261 AATCGGGTTTACTACTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTA
* * * *
95617885 AATTATATTCTGGAAGATAAAAATATTTTTAGCGAAATCAATTTTATGGTTTTAAATATTTTTTG
326 AATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTG
* *
95617950 GTTAAAATAAATATTTTATTGAAAAATAAAATAAAATGGGGTTTAATTAAGAGAAGTTACAATAT
391 GTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATAT
* * *
95618015 TAACTAAATAGGTATACAATATTCAGGAAAATAAAAATATTTTTAAAAAAATATCACA
456 TAACTAAATAGGTATATAATATTCA-GAAAATAAAAATATTTTTAGAAAAATATCACG
**
95618073 AATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCATAGGAGTATCGC
1 AATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGC
* * * *
95618138 CCAATATTTTCTTCTTTCCTTTCCAGACCACAAAATTCTGCCTATCTTTGATAGAAGCTCCGCGA
66 CCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGA
* * *
95618203 TCCCAATCCTAAATGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGCTTGTAA
131 TCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAA
*
95618268 CGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCAGGTTCCGGGTGAAAGCTAGGAGTT
196 CGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTT
* *
95618333 AATCGGGTTTACTACTCACTTCTTTAAAAAAAA-TAGTTAGCTTAATTTCATTTAAAAATTGGTA
261 AATCGGGTTTACTACTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTA
* * *
95618397 AATAATATTCCGAAAAATAATAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTGTG
326 AATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTG
*
95618462 GTTAAAATAAATATTTTATTGAAAAATAAATTGAAATGGGGTTTAATTGAGAGAAGTTACAATAT
391 GTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATAT
* * *
95618527 TAACTAAATAGTTATATGATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACG
456 TAACTAAATAGGTATATAATATT-CAGAAAATAAAAATATTTTTAGAAAAATATCACG
* *
95618585 AATATCATGAATACTAATACCCCTATCCTTTTAGGCTCACACAAATTCTTCCACGGGAGTATCGC
1 AATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGC
* *
95618650 CCAATATTTTCCTTTTTCCTTTCCAGACCACCAAATTCTGCTGATCTTTGATAGAAGCTCCTCGA
66 CCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGA
* * * *
95618715 TCACAATCCTAATTGTCCAAGCCTACTTCTAATCGCAAATTTTTCAAA-TAATGTTGTGTTTCTG
131 TCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGT-ATGTTGTGTTTGT-
* *
95618779 AA-GCCCTAAAAATAGGAT-TACTAGTTTTGAGTAAGTTTATCGGGTTCGGGGCGAAAGCTAGGA
194 AACGCCCTAAAAATAGG-TCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGA
* * *
95618842 GTTAATCGAGTTTACTACTCATTTCTTTAAAAAATATTAGTTAGCTTAATTTCATTTGAAAATCG
258 GTTAATCGGGTTTACTACTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCG
*
95618907 GTAAATAATATTCCGGAATAT-AAAATA--TTTAGAGAAATCAATTTTATGGTTTTAAATATTTT
323 GTAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTT
95618969 TTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAA
388 TTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAA
* *
95619034 TACTAACTAAATAGGTATATAATATTCTGAAAGATAAAAATATTTTTAGAAAAATATCACG
453 TATTAACTAAATAGGTATATAATATTCAGAAA-ATAAAAATATTTTTAGAAAAATATCACG
*
95619095 AATATCATGAATACTAATACCCCTATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGC
1 AATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGC
* *
95619160 CCAATATTTTCCTCTCTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAACCTCCTCGA
66 CCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGA
**
95619225 TCACAATCCTAATTGTCCAAACCTACTTGTAATCTTAAATTTTCCAAAGTATGTTGTGTTTGTAA
131 TCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAA
* * *
95619290 TGCCCTAAAAATAGATCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTATGAGTT
196 CGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTT
* * *
95619355 AATCGGGTTTACAAGTCATTT-TTT-AAAAAAATTAGTTAGCTTAATTTCATTTGAAAATCGGTA
261 AATCGGGTTTACTACTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTA
* * * * *
95619418 AATAATATTCCGGAATATAAAAATATATTTATATAAATCAATTTTATGCTTTTAAATATTTTTTG
326 AATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTG
* *
95619483 GTAAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGATACAATAT
391 GTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATAT
*
95619548 TAACTAAATAGGTATATAATATTCCAGAAAATAAAAATATTTTTAGAAAAATATCATG
456 TAACTAAATAGGTATATAATATT-CAGAAAATAAAAATATTTTTAGAAAAATATCACG
95619606 AATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGC
1 AATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGC
* *
95619671 CCAATATTTTCCTTTTTCCTTTCAAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGA
66 CCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGA
* **
95619736 TCACAATCCTAATTGTCCAAACCTACTTGTAATTGCAAATTTTCCAAAGTATGTTGCATTTGTAA
131 TCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAA
* *
95619801 CGCCCTAAAAATAGGTCTACTAGTTTTGAATAAGTTTATCGGGTTCTGGGTGAAAGCTAGGAGTT
196 CGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTT
*
95619866 AATCGGGTTTACTACTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATTGGTA
261 AATCGGGTTTACTACTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTA
*
95619931 AATAATATTCCGGAAAATAACAATATTTTTAGAGAAA
326 AATAATATTCCGGAAAATAAAAATATTTTTAGAGAAA
95619968 ACCCTAAAAA
Statistics
Matches: 2227, Mismatches: 163, Indels: 35
0.92 0.07 0.01
Matches are distributed among these distances:
508 56 0.03
509 17 0.01
510 405 0.18
511 413 0.19
512 835 0.37
513 500 0.22
514 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.35
Consensus pattern (512 bp):
AATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGC
CCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGA
TCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAA
CGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTT
AATCGGGTTTACTACTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTA
AATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTG
GTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATAT
TAACTAAATAGGTATATAATATTCAGAAAATAAAAATATTTTTAGAAAAATATCACG
Found at i:95620077 original size:166 final size:166
Alignment explanation
Indices: 95619803--95620135 Score: 621
Period size: 166 Copynumber: 2.0 Consensus size: 166
95619793 ATTTGTAACG
*
95619803 CCCTAAAAATAGGTCTACTAGTTTTGAATAAGTTTATCGGGTTCTGGGTGAAAGCTAGGAGTTAA
1 CCCTAAAAATAGGTCTACTAGTTTTGAATAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAA
*
95619868 TCGGGTTTACTACTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATTGGTAAA
66 TCGGGTTTACAACTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATTGGTAAA
95619933 TAATATTCCGGAAAATAACAATATTTTTAGAGAAAA
131 TAATATTCCGGAAAATAACAATATTTTTAGAGAAAA
* *
95619969 CCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTATGAGTTAA
1 CCCTAAAAATAGGTCTACTAGTTTTGAATAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAA
*
95620034 TCGGGTTTACAAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATTGGTAAA
66 TCGGGTTTACAACTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATTGGTAAA
95620099 TAATATTCCGGAAAATAACAATATTTTTAGAGAAAA
131 TAATATTCCGGAAAATAACAATATTTTTAGAGAAAA
95620135 C
1 C
95620136 AATTTTATGG
Statistics
Matches: 162, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
166 162 1.00
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.35
Consensus pattern (166 bp):
CCCTAAAAATAGGTCTACTAGTTTTGAATAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAA
TCGGGTTTACAACTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATTGGTAAA
TAATATTCCGGAAAATAACAATATTTTTAGAGAAAA
Found at i:95620174 original size:20 final size:19
Alignment explanation
Indices: 95620149--95620192 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
95620139 TTTATGGGTT
95620149 TAAATATTTT-TTGGTAAAAA
1 TAAATATTTTATT-G-AAAAA
95620169 TAAATATTTTATTGAAAAA
1 TAAATATTTTATTGAAAAA
95620188 TAAAT
1 TAAAT
95620193 TGAAATGGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 10 0.43
20 11 0.48
21 2 0.09
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (19 bp):
TAAATATTTTATTGAAAAA
Found at i:95620178 original size:19 final size:20
Alignment explanation
Indices: 95620149--95620192 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
95620139 TTTATGGGTT
95620149 TAAATATTTTT-TGGTAAAAA
1 TAAATATTTTTATGG-AAAAA
*
95620169 TAAATA-TTTTATTGAAAAA
1 TAAATATTTTTATGGAAAAA
95620188 TAAAT
1 TAAAT
95620193 TGAAATGGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (20 bp):
TAAATATTTTTATGGAAAAA
Found at i:95621179 original size:280 final size:281
Alignment explanation
Indices: 95620635--95621196 Score: 997
Period size: 280 Copynumber: 2.0 Consensus size: 281
95620625 TAAAAATATT
*
95620635 TTTAGCGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAAAAATATTTTATTGAAAAATA
1 TTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAAAAATATTTTATTGAAAAATA
95620700 AATTAAAATGGGGTTTCATTGAGAAAAGTTACAATATTAACTAAAGAGGTATATAATATTCCAGA
66 AATTAAAATGGGGTTTCATTGAGAAAAGTTACAATATTAACTAAAGAGGTATATAATATTCCAGA
* *
95620765 AAATGCAAATATTTTTAGAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGG
131 AAA-GAAAATATTTTTAGAAAAATATCACGAATATAATGAATACTAATACCCCCATCCTTTTAGG
* *
95620830 TTCACACAAATTCTTCCACGGGAGTATCCCTCAATATTTTCCTCTTTCCTTTCCAGACCACCAAA
195 TTCACACAAATTCTTCCACGGGAGTATCCCTCAATATGTTCCTCTTTCCTTTCCAGAACACCAAA
95620895 TTCTGCTTATCTTTGATAGAAG
260 TTCTGCTTATCTTTGATAGAAG
95620917 TTTAGAGAAATCAATTTTATGGTTTTAAATA-TTTTTGGTTAAAATAAATATTTTATTGAAAAAT
1 TTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAA-AAATATTTTATTGAAAAAT
*
95620981 AAATTAAAATGGGGTTTCATTGAGAAAAGTTACAATATTAACTAAAGAGGTATATAATATTCCGG
65 AAATTAAAATGGGGTTTCATTGAGAAAAGTTACAATATTAACTAAAGAGGTATATAATATTCCAG
95621046 AAAA-AAAATATTTTTAGAAAAATATCACGAATATAATGAATACTAATACCCCCATCCTTTTAGG
130 AAAAGAAAATATTTTTAGAAAAATATCACGAATATAATGAATACTAATACCCCCATCCTTTTAGG
*
95621110 TTGACACAAATTCTTCCACGGGAGTATCGCC-CAATA-GTTCCTTCTTTCCTTTCCAGAACACCA
195 TTCACACAAATTCTTCCACGGGAGTATC-CCTCAATATGTTCC-TCTTTCCTTTCCAGAACACCA
95621173 AATTCTGCTTATCTTTGATAGAAG
258 AATTCTGCTTATCTTTGATAGAAG
95621197 CTCCTCGATC
Statistics
Matches: 270, Mismatches: 7, Indels: 8
0.95 0.02 0.03
Matches are distributed among these distances:
279 4 0.01
280 134 0.50
281 15 0.06
282 117 0.43
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (281 bp):
TTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAAAAATATTTTATTGAAAAATA
AATTAAAATGGGGTTTCATTGAGAAAAGTTACAATATTAACTAAAGAGGTATATAATATTCCAGA
AAAGAAAATATTTTTAGAAAAATATCACGAATATAATGAATACTAATACCCCCATCCTTTTAGGT
TCACACAAATTCTTCCACGGGAGTATCCCTCAATATGTTCCTCTTTCCTTTCCAGAACACCAAAT
TCTGCTTATCTTTGATAGAAG
Found at i:95621366 original size:790 final size:750
Alignment explanation
Indices: 95620118--95621914 Score: 2609
Period size: 792 Copynumber: 2.3 Consensus size: 750
95620108 GGAAAATAAC
* * * *
95620118 AATATTTTTAGAGAAAACAATTTTATGGGTTTAAATATTTTTTGGTAAAAATAAATATTTTATTG
1 AATATATTTAGAGAAATCAATTTTATGGTTTTAAATA-TTTTTGGTTAAAATAAATATTTTATTG
* * *
95620183 AAAAATAAATTGAAATGGGGTTTAATTGAGAGAAGTTACAATATTAACTAAATAGGTATATAATA
65 AAAAATAAATTAAAATGGGGTTTCATTGAGAGAAGTTACAATATTAACTAAAGAGGTATATAATA
* * * *
95620248 TTCCAGAAAATAAAAATATTTTTAGAAAAAAATCACGAATATCATGAATGCTAATACCCCCATCC
130 TTCC-GGAAA-AAAAATATTTTTAGAAAAATATCACGAATATAATGAATACTAATACCCCCATCC
*
95620313 TTTTAGGCTGACAC-AATTCCTTCCACGGGAGTATCGCCCAATATTTTCC-TCTTTCTTTTCCAG
193 TTTTAGGCTGACACAAATT-CTTCCACGGGAGTATCGCCCAATA--TTCCTTCTTTCCTTTCCAG
*
95620376 ACGATCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAAATGTCCAAACCTAC
255 ACGACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAAATGTCCAAACCTAC
* *
95620441 TTGTAATCACAAATTTTCCAAAGAATGTTGTGTTTGTGAAGCCCTAAAAATAAGTCTACTAGTTT
320 TTGTAATCACAAATTTTCCAAAGAATGTTGTGTTTCTGAAGCACTAAAAATAAGTCTACTAGTTT
*
95620506 TGACTAAGTTTATCGGTTCTGGGTGAAAACTAGGAGTTAACCGGGTTTACTAGTCATTTCTTTAA
385 TGACTAAGTTTATCGGTTCCGGGTGAAAACTAGGAGTTAACCGGGTTTACTAGTCATTTCTTTAA
* * *
95620571 AAAAAA-TAGTTAGCTTCATTTCATTTAAAAATTGGTAAATAATATTCCAGAATATAAAAATATT
450 AAAAAATTAGTTAGCTTAATTTCATTTAAAAATTAGTAAATAATATTCCAGAAAATAAAAATATT
*
95620635 TTTAGCGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAA-AAATATTTTATTGAAAAAT
515 TTTAGAGAAATCAATTTTATGGTTTTAAATA-TTTTTGGTTAAAATAAATATTTTATTGAAAAAT
95620699 AAATTAAAATGGGGTTTCATTGAGAAAAGTTACAATATTAACTAAAGAGGTATATAATATTCCAG
579 AAATTAAAATGGGGTTTCATTGAGAAAAGTTACAATATTAACTAAAGAGGTATATAATATTCCAG
95620764 AAAATGCAAATATTTTTAGAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAG
644 AAAATGCAAATATTTTTAGAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAG
* *****
95620829 GTTCACACAAATTCTTCCACGGGAGTATC-CCTCAATATTTTCC
709 GCTCACACAAATTCTTCCACGGGAGTATCGCC-CAATA-ACAAA
** * * * * *
95620872 TCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGTTTAGAGAAATCAATTTTAT
1 AATAT-ATTT--AG---A-GAAA---T-C-AAT-TTT-AT-G--GTTT---TAAAT--ATTTT-T
95620937 GGTTTTAAATATTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATT
43 GG--TTAAA-A--------T-AAAT--A--TTTTATTGAAAAATAAATTAAAATGGGGTTTCATT
*
95621002 GAGAAAAGTTACAATATTAACTAAAGAGGTATATAATATTCCGGAAAAAAAATATTTTTAGAAAA
92 GAGAGAAGTTACAATATTAACTAAAGAGGTATATAATATTCCGGAAAAAAAATATTTTTAGAAAA
*
95621067 ATATCACGAATATAATGAATACTAATACCCCCATCCTTTTAGGTTGACACAAATTCTTCCACGGG
157 ATATCACGAATATAATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGG
95621132 AGTATCGCCCAATAGTTCCTTCTTTCCTTTCCAGAAC-ACCAAATTCTGCTTATCTTTGATAGAA
222 AGTATCGCCCAATA-TTCCTTCTTTCCTTTCCAG-ACGACCAAATTCTGCTTATCTTTGATAGAA
* * * *
95621196 GCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCATAGTATGTTG
285 GCTCCTCGATCACAATCCTAAATGTCCAAACCTACTTGTAATCACAAATTTTCCAAAGAATGTTG
* * *
95621261 TGTTTCT-AATGCACTGAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAA
350 TGTTTCTGAA-GCACTAAAAATAAGTCTACTAGTTTTGACTAAGTTTATC-GGTTCCGGGTGAAA
* * *
95621325 GCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCCTTTA
413 ACTAGGAGTTAACCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTA
*
95621390 AAAATTAGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAA
478 AAAATTAGTAAATAATATTCCAGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAA
95621455 ATATTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTGAGAAAAG
543 ATATTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTGAGAAAAG
95621520 TTACAATATTAACTAAAGAGGTATATAATATTCCAGAAAATGCAAATATTTTTAGAAAAATATCA
608 TTACAATATTAACTAAAGAGGTATATAATATTCCAGAAAATGCAAATATTTTTAGAAAAATATCA
95621585 CGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTCACACAAATTCTTCCACGGGAGTATC
673 CGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTCACACAAATTCTTCCACGGGAGTATC
*
95621650 GCCCAATAATAAA
738 GCCCAATAACAAA
95621663 AATATATTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTGGTTAAAATAAATATTTTATTGA
1 AATATATTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTGGTTAAAATAAATATTTTATTGA
95621728 AAAATAAATTAAAATGGGGTTTCATTGAGAGAAGTTACAATATTAACTAAAGAGGTATATAATAT
66 AAAATAAATTAAAATGGGGTTTCATTGAGAGAAGTTACAATATTAACTAAAGAGGTATATAATAT
95621793 TCCGGAAAAAAAATATTTTTAGAAAAATATCACGAATATAATGAATACTAATACCCCCATCCTTT
131 TCCGGAAAAAAAATATTTTTAGAAAAATATCACGAATATAATGAATACTAATACCCCCATCCTTT
* * **
95621858 TAGGCTCACACAAATTCTTCCACGGGAGTATCCCCCAATATTTTTCTCTTTCCTTTC
196 TAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTCCT-TCTTTCCTTTC
95621915 TGGACCACTA
Statistics
Matches: 937, Mismatches: 58, Indels: 98
0.86 0.05 0.09
Matches are distributed among these distances:
751 3 0.00
752 186 0.20
754 3 0.00
755 3 0.00
756 4 0.00
757 3 0.00
760 1 0.00
761 3 0.00
765 2 0.00
766 7 0.01
767 3 0.00
768 5 0.01
769 6 0.01
771 7 0.01
774 8 0.01
775 4 0.00
776 5 0.01
777 2 0.00
778 7 0.01
779 3 0.00
780 1 0.00
781 1 0.00
784 3 0.00
785 1 0.00
787 1 0.00
788 6 0.01
789 6 0.01
790 233 0.25
791 80 0.09
792 338 0.36
793 2 0.00
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.35
Consensus pattern (750 bp):
AATATATTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTGGTTAAAATAAATATTTTATTGA
AAAATAAATTAAAATGGGGTTTCATTGAGAGAAGTTACAATATTAACTAAAGAGGTATATAATAT
TCCGGAAAAAAAATATTTTTAGAAAAATATCACGAATATAATGAATACTAATACCCCCATCCTTT
TAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTCCTTCTTTCCTTTCCAGACGACC
AAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAAATGTCCAAACCTACTTGTAA
TCACAAATTTTCCAAAGAATGTTGTGTTTCTGAAGCACTAAAAATAAGTCTACTAGTTTTGACTA
AGTTTATCGGTTCCGGGTGAAAACTAGGAGTTAACCGGGTTTACTAGTCATTTCTTTAAAAAAAA
TTAGTTAGCTTAATTTCATTTAAAAATTAGTAAATAATATTCCAGAAAATAAAAATATTTTTAGA
GAAATCAATTTTATGGTTTTAAATATTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAA
AATGGGGTTTCATTGAGAAAAGTTACAATATTAACTAAAGAGGTATATAATATTCCAGAAAATGC
AAATATTTTTAGAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTCACA
CAAATTCTTCCACGGGAGTATCGCCCAATAACAAA
Found at i:95622492 original size:17 final size:18
Alignment explanation
Indices: 95622466--95622507 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
95622456 AGAGAAATCA
*
95622466 ATTTTATGGTT-TTAAAT
1 ATTTTATGGTTAATAAAT
*
95622483 ATTTTTTGGTTAATAAAT
1 ATTTTATGGTTAATAAAT
95622501 ATTTTAT
1 ATTTTAT
95622508 TGAAAAATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.31, C:0.00, G:0.10, T:0.60
Consensus pattern (18 bp):
ATTTTATGGTTAATAAAT
Found at i:95622575 original size:507 final size:507
Alignment explanation
Indices: 95620917--95623307 Score: 2831
Period size: 510 Copynumber: 4.7 Consensus size: 507
95620907 TTGATAGAAG
95620917 TTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTGGTTAAAATAAATATTTTATTGAAAAATA
1 TTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTGGTT-AAATAAATATTTTATTGAAAAATA
* *
95620982 AATTAAAATGGGGTTTCATTGAGAAAAGTTACAATATTAACTAAAGAGGTATATAATATTCCGGA
65 AATTAAAATGGGGTTTCATTGAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGA
* *
95621047 AAA-AAAATATTTTTAGAAAAATATCACGAATATAATGAATACTAATACCCCCATCCTTTTAGGT
130 AAATAAAATATTTTTA-AAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGC
95621111 TGACACAAATTCTTCCACGGGAGTATCGCCCAATAGTTCCTTCTTTCCTTTCCAGAACACCAAAT
194 TGACACAAATTCTTCCACGGGAGTATCGCCCAATAGTTCC-TCTTTCCTTTCCAGAACACCAAAT
* *
95621176 TCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGC
258 TCTGCTTATCTTTTATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTCTAATCGC
* * * *
95621241 AAATTTTCCATAGTATGTTGTGTTTCTAATGCACTGAAAATAGGTCTACTAGTTTTGAGTAAGTT
323 AAATATTCCAAAGTATGTTGTGTTTCTAATGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTT
95621306 TATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTA
388 TATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCA-TTCTTTAAAAAAAATTA
* **
95621371 GTTAGCTTAATTTCCTTTAAAAATTAGTAAATAATATTCCGGAAAATAAAAATATT
452 GTTAGCTTAATTTCATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATT
95621427 TTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTGGTTAAAATAAATATTTTATTGAAAAATA
1 TTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTGGTT-AAATAAATATTTTATTGAAAAATA
* * *
95621492 AATTAAAATGGGGTTTCATTGAGAAAAGTTACAATATTAACTAAAGAGGTATATAATATTCCAGA
65 AATTAAAATGGGGTTTCATTGAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGA
*
95621557 AAATGCAAATATTTTTAGAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGG
130 AAAT-AAAATATTTTTA-AAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGG
* * ***** * * ** *
95621622 CTCACACAAATTCTTCCACGGGAGTATCGCCCAATAATAAAAATAT-ATTTAGAGAA-ATC-AA-
193 CTGACACAAATTCTTCCACGGGAGTATCGCCCAATAGTTCCTCTTTCCTTTCCAGAACACCAAAT
** ** ** * * * * ** * * ** ** * **
95621683 T-T--TTATGGTTT-TA-AATATTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAAT
258 TCTGCTTATCTTTTATAGAAGCTCCTCGATCACAAT-CCTA-ATTGTCCAAACCT-ACTTCTAAT
* **** * * * * * * * *** * *** *
95621743 GGGGTTTCATT-GAGAG-AAGTTACAATATTAACTAAAGAGGTATATAATATTCCGGAAAAAAAA
320 CGCAAAT-ATTCCAAAGTATGTT---GTGTT-TCTAATGCCCTA-A-AA-A-T-AGG---TCTAC
* *** * ** **** ** **** **
95621806 TA-TTTTTAG-AAAAATATCACGAAT-ATAATGAATA-CTAATACCCCCATC-CTTTTAGGCTCA
372 TAGTTTTGAGTAAGTTTATC-GGGTTCCGGGTGAA-AGCTAGGA-GTTAATCGGGTTTA--CT-A
** ** **** * *** * * ***** ** *
95621866 CACAAATTC-TTCCACGGGAGTA-TCCCCCAATATTTTTC-TCTTTCCTTTCTGG--ACCACTAT
431 GTC--ATTCTTTAAAAAAAATTAGT-TAGC-TTA-ATTTCAT-TTAAAAATC-GGTAAATAATAT
*
95621926 TCCGGAAAATAACAATATT
489 TCCGGAAAATAAAAATATT
95621945 TTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTGGTTAAAATAAATATTTTATTGAAAAATA
1 TTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTGGTT-AAATAAATATTTTATTGAAAAATA
*
95622010 AATTAAAATGGGGTTTCATTGAGTGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGA
65 AATTAAAATGGGGTTTCATTGAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGA
* *
95622075 AAATAAATTTTTTTTTAAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGC
130 AAATAAA-ATATTTTTAAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGC
* *
95622140 TGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAAT
194 TGACACAAATTCTTCCACGGGAGTATCGCCCAATA-GTTCCTCTTTCCTTTCCAGAACACCAAAT
*
95622205 TCTGCTTATTTTTTATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTCTAATCGC
258 TCTGCTTATCTTTTATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTCTAATCGC
* *
95622270 AAATATTCCAAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTT
323 AAATATTCCAAAGTATGTTGTGTTTCTAATGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTT
95622335 TATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATT-TTTAAAAAAAA-TAG
388 TATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTCTTTAAAAAAAATTAG
*
95622398 TTAGCTTAATTTCATTTAAAAATCGGTAAATAATATTCCGGAAAATAACAATATT
453 TTAGCTTAATTTCATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATT
95622453 TTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTT-AATAAATATTTTATTGAAAAATA
1 TTTAGAGAAATCAATTTTATGGTTTTAAATA-TTTTTGGTTAAATAAATATTTTATTGAAAAATA
* *
95622517 AATTAAAATGGGGTTTCATTGAGTGAAGTTACAATATTAACTAAATAGGTATATAATATTCTGGA
65 AATTAAAATGGGGTTTCATTGAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGA
*
95622582 AAATAAAAATATTTTAAAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGC
130 AAAT-AAAATATTTTTAAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGC
* *
95622647 TGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAAT
194 TGACACAAATTCTTCCACGGGAGTATCGCCCAATA-GTTCCTCTTTCCTTTCCAGAACACCAAAT
* * * **
95622712 TCTGCTTATTTTTTATAGAAGCTCCTCAATCACAATCCTAATTGTCCAAACCTACTTGTAATCTT
258 TCTGCTTATCTTTTATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTCTAATCGC
* * *
95622777 AAATTTTCCAAAGTATGTTGTGTTTGTAATGCCTTAAAAATAGGTCTACTAGTTTTGAGTAAGTT
323 AAATATTCCAAAGTATGTTGTGTTTCTAATGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTT
* *
95622842 TATCGGGTTCCGGGTGAAAGCTATGAGTTAATCGGGTTTACAAGTCATT-TTTAAAAAAAAAATT
388 TATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTCTTT--AAAAAAAATT
* * * * * * *
95622906 AGTTAGCTTAATTTCATGTGAAAACCGATACATAATATTCCGGAATATAAAAATATA
451 AGTTAGCTTAATTTCATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATT
95622963 TTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAA-AAATATTTTATTGAAAAATA
1 TTTAGAGAAATCAATTTTATGGTTTTAAATA-TTTTTGGTTAAATAAATATTTTATTGAAAAATA
*
95623027 AATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGA
65 AATTAAAATGGGGTTTCATTGAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGA
* *
95623092 AAATAAATTTTTTTTTAAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGC
130 AAATAAA-ATATTTTTAAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGC
95623157 TGACACAAATTCTTCCACGGGAGTATCGCCCAATAGTTCCTTCTTTCCTTTCCAGAACACCAAAT
194 TGACACAAATTCTTCCACGGGAGTATCGCCCAATAGTTCC-TCTTTCCTTTCCAGAACACCAAAT
*
95623222 TCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTCTAATCGC
258 TCTGCTTATCTTTTATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTCTAATCGC
95623287 AAACT-TTCCAAAGTATGTTGT
323 AAA-TATTCCAAAGTATGTTGT
95623308 AACACCCCAA
Statistics
Matches: 1577, Mismatches: 241, Indels: 126
0.81 0.12 0.06
Matches are distributed among these distances:
502 10 0.01
503 4 0.00
504 17 0.01
505 11 0.01
506 5 0.00
507 395 0.25
508 69 0.04
509 30 0.02
510 516 0.33
511 6 0.00
512 96 0.06
513 7 0.00
514 30 0.02
515 30 0.02
516 8 0.01
517 94 0.06
518 170 0.11
519 16 0.01
520 4 0.00
521 8 0.01
522 4 0.00
523 4 0.00
524 11 0.01
525 18 0.01
526 4 0.00
527 10 0.01
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.36
Consensus pattern (507 bp):
TTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTGGTTAAATAAATATTTTATTGAAAAATAA
ATTAAAATGGGGTTTCATTGAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAA
AATAAAATATTTTTAAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTG
ACACAAATTCTTCCACGGGAGTATCGCCCAATAGTTCCTCTTTCCTTTCCAGAACACCAAATTCT
GCTTATCTTTTATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTCTAATCGCAAA
TATTCCAAAGTATGTTGTGTTTCTAATGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTAT
CGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTCTTTAAAAAAAATTAGTTA
GCTTAATTTCATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATT
Found at i:95624362 original size:27 final size:27
Alignment explanation
Indices: 95624332--95624423 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
95624322 ATTACCAAAG
* *
95624332 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTATCGTTT
* * *
95624359 TACCCTCGATTTGCAAAATTACCATTT
1 TACCCTCGATTTACAAAATTATCGTTT
95624386 TACCCTC-AGTTTACAAAATTATCGTTT
1 TACCCTCGA-TTTACAAAATTATCGTTT
*
95624413 TACGCTCGATT
1 TACCCTCGATT
95624424 GTGAAATTAC
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.02
27 52 0.96
28 1 0.02
ACGTcount: A:0.27, C:0.23, G:0.10, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTATCGTTT
Found at i:95624377 original size:54 final size:54
Alignment explanation
Indices: 95624305--95624423 Score: 141
Period size: 54 Copynumber: 2.2 Consensus size: 54
95624295 ATTACTGAAA
* * * * *
95624305 TACCCTTGACTTGTAAAATTACCAAAGTACCCTC-GATTTATAGAATTATCGTTT
1 TACCCTCGATTTGCAAAATTACCAAAGTACCCTCAG-TTTACAAAATTATCGTTT
***
95624359 TACCCTCGATTTGCAAAATTACCATTTTACCCTCAGTTTACAAAATTATCGTTT
1 TACCCTCGATTTGCAAAATTACCAAAGTACCCTCAGTTTACAAAATTATCGTTT
*
95624413 TACGCTCGATT
1 TACCCTCGATT
95624424 GTGAAATTAC
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
54 54 0.98
55 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.10, T:0.38
Consensus pattern (54 bp):
TACCCTCGATTTGCAAAATTACCAAAGTACCCTCAGTTTACAAAATTATCGTTT
Found at i:95624485 original size:27 final size:27
Alignment explanation
Indices: 95624455--95624550 Score: 81
Period size: 27 Copynumber: 3.6 Consensus size: 27
95624445 TGTAGGATAG
***
95624455 AATTACCAAAATACCACTGGTTTG-AGA
1 AATTACCAAAATACCACCAATTTGTA-A
* *
95624482 AATTACCGAAATACCCCCAATTTGTAA
1 AATTACCAAAATACCACCAATTTGTAA
**
95624509 AATTACCAAAATACC-CCTAATTTACAA
1 AATTACCAAAATACCACC-AATTTGTAA
95624536 AATTA-CAGAAATACC
1 AATTACCA-AAATACC
95624551 CTTGACTTTT
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
26 4 0.07
27 53 0.91
28 1 0.02
ACGTcount: A:0.45, C:0.23, G:0.07, T:0.25
Consensus pattern (27 bp):
AATTACCAAAATACCACCAATTTGTAA
Found at i:95624551 original size:27 final size:27
Alignment explanation
Indices: 95624481--95624551 Score: 90
Period size: 27 Copynumber: 2.6 Consensus size: 27
95624471 CTGGTTTGAG
* **
95624481 AAATTACCGAAATACCCCCAATTTGTA
1 AAATTACAGAAATACCCCCAATTTACA
*
95624508 AAATTACCA-AAATACCCCTAATTTACA
1 AAATTA-CAGAAATACCCCCAATTTACA
95624535 AAATTACAGAAATACCC
1 AAATTACAGAAATACCC
95624552 TTGACTTTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
26 2 0.05
27 35 0.92
28 1 0.03
ACGTcount: A:0.46, C:0.25, G:0.04, T:0.24
Consensus pattern (27 bp):
AAATTACAGAAATACCCCCAATTTACA
Found at i:95625574 original size:25 final size:25
Alignment explanation
Indices: 95625538--95625607 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
95625528 AGGAAGTGCT
*
95625538 AAAAGGGCTCTGCCCCAGTTTACCG
1 AAAAGGGCTCTGCCCCAGTTTACCA
* * *
95625563 AAAAGGGATCTGCCACAGTTTATCA
1 AAAAGGGCTCTGCCCCAGTTTACCA
*
95625588 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTCTGCCCCAGTT
95625608 ATTAAAAGAG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.23
Consensus pattern (25 bp):
AAAAGGGCTCTGCCCCAGTTTACCA
Found at i:95625620 original size:24 final size:24
Alignment explanation
Indices: 95625588--95625634 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
95625578 CAGTTTATCA
**
95625588 AAAAGGGCTTTGCC-CCAGTTATT
1 AAAAGGGCTAGGCCTCCAGTTATT
95625611 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTAGGCCTCCAGTTAT
95625635 ATGATAAAGC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.25
24 7 0.35
25 8 0.40
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTAGGCCTCCAGTTATT
Found at i:95625814 original size:42 final size:42
Alignment explanation
Indices: 95625755--95625846 Score: 134
Period size: 42 Copynumber: 2.2 Consensus size: 42
95625745 TAGTCTCCCC
**
95625755 AAATGGGCTTGCATACAT-TCATTGGTATT-TCATGTGATATTG
1 AAATGGGCTTGCATACATCT-ATTGACATTAT-ATGTGATATTG
95625797 AAATGGGCTTGCATACATCTATTGACATTATATGTGATATTG
1 AAATGGGCTTGCATACATCTATTGACATTATATGTGATATTG
95625839 AAATGGGC
1 AAATGGGC
95625847 CTAAGGGCCA
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
42 44 0.96
43 2 0.04
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.37
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCTATTGACATTATATGTGATATTG
Found at i:95625905 original size:31 final size:31
Alignment explanation
Indices: 95625870--95625950 Score: 135
Period size: 31 Copynumber: 2.6 Consensus size: 31
95625860 CGTTTATAAT
95625870 AAAGGCTTCGACCCAGTAATATGATTTATGA
1 AAAGGCTTCGACCCAGTAATATGATTTATGA
* * *
95625901 AAAGGCTTCGGCCCAGTGATTTGATTTATGA
1 AAAGGCTTCGACCCAGTAATATGATTTATGA
95625932 AAAGGCTTCGACCCAGTAA
1 AAAGGCTTCGACCCAGTAA
95625951 CCGTTAAACG
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGACCCAGTAATATGATTTATGA
Found at i:95627696 original size:510 final size:513
Alignment explanation
Indices: 95626704--95630167 Score: 4826
Period size: 512 Copynumber: 6.6 Consensus size: 513
95626694 GGGTGTTACA
* * *
95626704 TATGTTGTGTTTGTAAAGCCCTAAAAATAGGTCTACTAGTTTTGGGTAAGTTTATCGGGTTCCGA
1 TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGG
* *
95626769 GCGAAAGCTAGGAGTTAATCGGGTTTACTAGTAATTTCTTT-AAAAAAATTAGTTAGCTTAATTT
66 GTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTT
* *
95626833 AATTTAAAAATCGGTAAATAATATTCCGGAATATAAAAATATTTTTAGAGAAATCAATTTTATGG
131 CATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGG
* ***
95626898 TTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAAGTAAAATGTTTTTTCATTG
196 TTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTG
* *
95626963 AGAGAAGTTACAATATTAACTAAATAGGTATATAATATTACGGAAAATAAAAATATTTTTAAAAA
261 AGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAA
*
95627028 AATATCACGAATATCATGAATACTAATACCCCAATCCTTTTAGGCTGACACAAATTCTTCCACGG
326 AATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGG
* *
95627093 GAGTATCGCCCAATATTTTCCTCTTTCCATTCCAGACCACCAAATTCTGCTTATCTTTGATAGAA
391 GAGTATCGCCCAATATTTTTCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAA
*
95627158 GCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATTACAAATTTTCCAAAG
456 GCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAG
* *
95627216 TATGTTGTGTTTATAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTA-CTGGGTTACG
1 TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATC-GGGTTCCG
* *
95627280 GGTGAAAGCTAGGAGTTAATCGGGTTTACTACTCATTTCTTTAAAAAAAATTAATTAGCTTAATT
65 GGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATT
* *
95627345 TCATTTAAAAATCTGTAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATG
130 TCATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATG
* *
95627410 GTTTT-AATTTTTTTTGGTTAAAATAAATATTTCATTGAAAAA-AAATTAAAATGGGGTTTCATT
195 GTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATT
* * *
95627473 AAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCTGGAAATTAAAAATATTTTTAGAA
260 GAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAA
* * *
95627538 AAATATCATGAACATCATGAATACTAATA-CCCCATCCTTTTAGGCTGACACAAATTCTTCCAAG
325 AAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACG
* * * *
95627602 CGAGTATCGCCCAATATTTTTCTCTTTCCTTTTCAGACCACCAAATTTTGCTTATCTTTGATAAA
390 GGAGTATCGCCCAATATTTTTCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGA
95627667 AGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAG
455 AGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAG
* * * *
95627726 TATGTAGTGTTTGTAATGCCTTAAAAATAGGTCTACTAGTTTTGCGTAAGTTTATCGGGTTCCGG
1 TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGG
* *
95627791 GTGAATGCTAGGAGTTAATCGGGTTTACTACTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTT
66 GTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTT
* *
95627856 CATTTAAAAATCGATAAATAATATTCCGGAAAATAAAAATATATTTAGAGAAATCAATTTTATGG
131 CATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGG
* * *
95627921 TTTTAAATATTTTTTGGTTAAAATAAATATTTTATTCAAAAATAAATTAAACTAGGGTTTCATT-
196 TTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTG
95627985 -GA-AAG--A-AATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAA
261 AGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAA
* *
95628045 GATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCAAGG
326 AATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGG
*
95628110 GAGTATCGCCCAATATTTTTCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTCATAGAA
391 GAGTATCGCCCAATATTTTTCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAA
* * * *
95628175 GCTCCTAGATCACAATCCTAATTGTCTAAACCTTCTTGTAAT-AGCAAATTTTCCAATG
456 GCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCA-CAAATTTTCCAAAG
* * * * *
95628233 TATGTTGTGTTTGTAACACCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCAGGCTCTGT
1 TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGG
*
95628298 GTGAAAACTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTT
66 GTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTT
*
95628363 CATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGATAAATCAATTTTATGG
131 CATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGG
* *
95628428 TTTTAAATA-TTTTTGGTTAAAATAAATATTTTATTGAAAATTAAATTAAAATGGAGTTTCATTG
196 TTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTG
*
95628492 AGAGAAGTTACAATATTAACTAAATAGATATATAATATTCCGGAAAATAAAAATATTTTTAGAAA
261 AGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAA
* * *
95628557 AATATAACGAATATCATGAATACTAATACCCTCATCCTTTTAGGCTAACACAAATTCTTCCACGG
326 AATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGG
* *
95628622 GAGTATAGCCCAATATTTTTCTCTTTCCTTTTCAGACCACCAAATTCTGCTTATCTTTGATAGAA
391 GAGTATCGCCCAATATTTTTCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAA
95628687 GCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAG
456 GCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAG
* * * * *
95628745 AATGTTGTGTTTGTAAAGCCCTAAAAATTGGTCTACTAGTTTTGAGTAATTTTATCAGGTTCCGG
1 TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGG
* *
95628810 GTGAAAGCTAGCAGTTAATCGGGATTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTT
66 GTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTT
* * * * *
95628875 CCTTTAAAAATCGGTAAATAATATTCCAGAAGATAAAAATATTTTTAGAGATATCAATTCTATGG
131 CATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGG
95628940 TTTTAAATATTTTTTGGTTAAAATAAATATTTTATT-AAAAATTAAATTAAAATGGGGTTTCATT
196 TTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAA-TAAATTAAAATGGGGTTTCATT
* *
95629004 GAGAGAAGTTACAATATTAACTAAATTGGTATATAATATTCCTGAAAATAAAAATATTTTTAGAA
260 GAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAA
* * *
95629069 AAATATCACGAATATCAGGAATACTAATACCCCCATCCTTTTAGGCTCACACAAATTCTTCCAGG
325 AAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACG
* * * *
95629134 GGAGTATCGCCCAATTGAATATCATGAATACTAATACCCCTATCCTTT-TAGGCTCACACAAATT
390 GGAGTATCGCCC-----AATAT--T---T--T--T--CTCTTTCCTTTCCAGAC-CAC-CAAATT
** **** **** *
95629198 CTTCCACGGGAGTATCCCCCAATATTTTTCTCTTTCCTTTCCAGA-CTACCAAATTCTGCTTATC
437 C-T------GCTTAT-CTTTGATA---GAAGC--TCC--T-C-GATC-A-C-AA-TC--CTAAT-
* ** * * * * *
95629262 TTTGATAGAAGCTCCTCGATCACAATC-CTAATTGTCCAAACCTACTTGTAATCATAAATTTTCC
478 TGT-CCA-AACCTACTTG-T---AATCACAAATT-T---T-----C-------C----A------
95629326 ATAG
511 A-AG
* * * *
95629330 TATGTTGTGTTTGTAACGCCCTGAAAATAGGTCGACTAGTTTTGAGTAAGTTTACCGAGTTCCGG
1 TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGG
*
95629395 GTTAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAA-TAGTTAGCTTAATTT
66 GTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTT
* *
95629459 CATTTAAAAATTGGTAAATAATATTCCGGAAAATTAAAATATTTTTAGAGAAATCAATTTTATGG
131 CATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGG
95629524 TTTTAAATATTTTTTGGTTAAAA-AAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTG
196 TTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTG
* *
95629588 AGAGAAGTTACAATATTAACTAAAGAGTTATATAATATTCCGGAAAATAAAAATATTTTTAGAAA
261 AGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAA
* ** *
95629653 AGTATCACGAATATGTTGAATACTAATACCCCCATCCTTTTAGGTTGACACAAATTCTTCCACGG
326 AATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGG
* *
95629718 GAGTATCCCCCAATATTTTTCTCTTTCCTTTCCAGACTACCAAATTCTGCTTATCTTTGATAGAA
391 GAGTATCGCCCAATATTTTTCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAA
* *
95629783 GCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCTAAAG
456 GCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAG
* * *
95629841 TATGTTGTGTTTGTAACTCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTGTATCGGGTTACGG
1 TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGG
* *
95629906 GTGAAAGCTAGGAGTTAATCGAGTTTACTAGTTATTTCTTTAAAAAAAATTAGTTAGCTTAATTT
66 GTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTT
* * * * *
95629971 CATTTAAAAGTTGGTAAATTATATTACAGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGG
131 CATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGG
95630036 TTTTAAATA-TTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTG
196 TTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTG
* * * * *
95630100 AGAGAAGTTGCAATATTAACTAATTAGGTATATAAAATTACGGAAAATAAAAATATTTTTAGAGA
261 AGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAA
95630165 AAT
326 AAT
95630168 CAATTTTATG
Statistics
Matches: 2626, Mismatches: 229, Indels: 194
0.86 0.08 0.06
Matches are distributed among these distances:
506 127 0.05
507 338 0.13
508 2 0.00
509 6 0.00
510 337 0.13
511 260 0.10
512 754 0.29
513 268 0.10
518 6 0.00
520 1 0.00
523 1 0.00
525 1 0.00
527 1 0.00
528 3 0.00
529 13 0.00
530 7 0.00
531 1 0.00
537 9 0.00
538 9 0.00
540 1 0.00
541 8 0.00
542 1 0.00
543 5 0.00
544 4 0.00
545 1 0.00
546 4 0.00
547 5 0.00
548 2 0.00
549 5 0.00
550 4 0.00
551 1 0.00
552 4 0.00
553 5 0.00
554 1 0.00
555 8 0.00
556 1 0.00
558 9 0.00
559 9 0.00
565 1 0.00
566 7 0.00
567 12 0.00
568 3 0.00
569 1 0.00
571 1 0.00
573 1 0.00
574 1 0.00
576 1 0.00
578 6 0.00
583 164 0.06
584 102 0.04
585 104 0.04
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.36
Consensus pattern (513 bp):
TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGG
GTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTT
CATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGG
TTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTG
AGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAA
AATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGG
GAGTATCGCCCAATATTTTTCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAA
GCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAG
Found at i:95629195 original size:72 final size:72
Alignment explanation
Indices: 95629078--95629220 Score: 250
Period size: 72 Copynumber: 2.0 Consensus size: 72
95629068 AAAATATCAC
* *
95629078 GAATATCAGGAATACTAATACCCCCATCCTTTTAGGCTCACACAAATTCTTCCAGGGGAGTATCG
1 GAATATCAGGAATACTAATACCCCCATCCTTTTAGGCTCACACAAATTCTTCCACGGGAGTATCC
95629143 CCCAATT
66 CCCAATT
* *
95629150 GAATATCATGAATACTAATACCCCTATCCTTTTAGGCTCACACAAATTCTTCCACGGGAGTATCC
1 GAATATCAGGAATACTAATACCCCCATCCTTTTAGGCTCACACAAATTCTTCCACGGGAGTATCC
95629215 CCCAAT
66 CCCAAT
95629221 ATTTTTCTCT
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
72 67 1.00
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (72 bp):
GAATATCAGGAATACTAATACCCCCATCCTTTTAGGCTCACACAAATTCTTCCACGGGAGTATCC
CCCAATT
Found at i:95629945 original size:511 final size:512
Alignment explanation
Indices: 95629158--95630162 Score: 1735
Period size: 511 Copynumber: 2.0 Consensus size: 512
95629148 TTGAATATCA
*
95629158 TGAATACTAATACCCCTATCCTTTTAGGCTCACACAAATTCTTCCACGGGAGTATCCCCCAATAT
1 TGAATACTAATACCCCCATCCTTTTAGGCTCACACAAATTCTTCCACGGGAGTATCCCCCAATAT
95629223 TTTTCTCTTTCCTTTCCAGACTACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAAT
66 TTTTCTCTTTCCTTTCCAGACTACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAAT
* * *
95629288 CCTAATTGTCCAAACCTACTTGTAATCATAAATTTTCCATAGTATGTTGTGTTTGTAACGCCCTG
131 CCTAATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAGTATGTTGTGTTTGTAACGCCCTA
* * * *
95629353 AAAATAGGTCGACTAGTTTTGAGTAAGTTTACCGAGTTCCGGGTTAAAGCTAGGAGTTAATCGGG
196 AAAATAGGTCGACTAGTTTTGAGTAAGTGTACCGAGTTACGGGTGAAAGCTAGGAGTTAATCGAG
95629418 TTTACTAGTCATTTCTTTAAAAAAAA-TAGTTAGCTTAATTTCATTTAAAAATTGGTAAATAATA
261 TTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATTGGTAAATAATA
* * *
95629482 TTCCGGAAAATTAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAA
326 TTACAGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATA-TTTTTGGTTAAAA
95629547 -AAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTGAGAGAAGTTACAATATTAACTAA
390 TAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTGAGAGAAGTTACAATATTAACTAA
* * *
95629611 AGAGTTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAGTATCACGAATATGT
455 AGAGGTATATAAAATTACGGAAAATAAAAATATTTTTAGAAAAGTATCACGAATATGT
* *
95629669 TGAATACTAATACCCCCATCCTTTTAGGTTGACACAAATTCTTCCACGGGAGTATCCCCCAATAT
1 TGAATACTAATACCCCCATCCTTTTAGGCTCACACAAATTCTTCCACGGGAGTATCCCCCAATAT
95629734 TTTTCTCTTTCCTTTCCAGACTACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAAT
66 TTTTCTCTTTCCTTTCCAGACTACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAAT
* * *
95629799 CCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCTAAAGTATGTTGTGTTTGTAACTCCCTA
131 CCTAATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAGTATGTTGTGTTTGTAACGCCCTA
* * *
95629864 AAAATAGGTCTACTAGTTTTGAGTAAGTGTATCGGGTTACGGGTGAAAGCTAGGAGTTAATCGAG
196 AAAATAGGTCGACTAGTTTTGAGTAAGTGTACCGAGTTACGGGTGAAAGCTAGGAGTTAATCGAG
* * *
95629929 TTTACTAGTTATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAGTTGGTAAATTATA
261 TTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATTGGTAAATAATA
95629994 TTACAGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTGGTTAAAAT
326 TTACAGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTGGTTAAAAT
* *
95630059 AAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTGAGAGAAGTTGCAATATTAACTAAT
391 AAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTGAGAGAAGTTACAATATTAACTAAA
*
95630124 TAGGTATATAAAATTACGGAAAATAAAAATATTTTTAGA
456 GAGGTATATAAAATTACGGAAAATAAAAATATTTTTAGA
95630163 GAAATCAATT
Statistics
Matches: 464, Mismatches: 28, Indels: 3
0.94 0.06 0.01
Matches are distributed among these distances:
511 282 0.61
512 182 0.39
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (512 bp):
TGAATACTAATACCCCCATCCTTTTAGGCTCACACAAATTCTTCCACGGGAGTATCCCCCAATAT
TTTTCTCTTTCCTTTCCAGACTACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAAT
CCTAATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAGTATGTTGTGTTTGTAACGCCCTA
AAAATAGGTCGACTAGTTTTGAGTAAGTGTACCGAGTTACGGGTGAAAGCTAGGAGTTAATCGAG
TTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATTGGTAAATAATA
TTACAGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTGGTTAAAAT
AAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTGAGAGAAGTTACAATATTAACTAAA
GAGGTATATAAAATTACGGAAAATAAAAATATTTTTAGAAAAGTATCACGAATATGT
Found at i:95630251 original size:143 final size:143
Alignment explanation
Indices: 95629993--95630310 Score: 618
Period size: 143 Copynumber: 2.2 Consensus size: 143
95629983 GGTAAATTAT
*
95629993 ATTACAGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTGGTTAAAA
1 ATTACGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTGGTTAAAA
95630058 TAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTGAGAGAAGTTGCAATATTAACTAA
66 TAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTGAGAGAAGTTGCAATATTAACTAA
95630123 TTAGGTATATAAA
131 TTAGGTATATAAA
95630136 ATTACGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTGGTTAAAA
1 ATTACGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTGGTTAAAA
95630201 TAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTGAGAGAAGTTGCAATATTAACTAA
66 TAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTGAGAGAAGTTGCAATATTAACTAA
95630266 TTAGGTATATAAA
131 TTAGGTATATAAA
*
95630279 ATTACGGAAAATAAAAATATTTTTAGAAAAAT
1 ATTACGGAAAATAAAAATATTTTTAGAGAAAT
95630311 ATCACGAATA
Statistics
Matches: 173, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
143 173 1.00
ACGTcount: A:0.46, C:0.03, G:0.13, T:0.38
Consensus pattern (143 bp):
ATTACGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTGGTTAAAA
TAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTGAGAGAAGTTGCAATATTAACTAA
TTAGGTATATAAA
Found at i:95632545 original size:37 final size:37
Alignment explanation
Indices: 95632504--95632577 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
95632494 ACAGGGGCTG
95632504 TATAAGCTTAAACAATTAATTGCAAAATTATAATTAA
1 TATAAGCTTAAACAATTAATTGCAAAATTATAATTAA
95632541 TATAAGCTTAAACAATTAATTGCAAAATTATAATTAA
1 TATAAGCTTAAACAATTAATTGCAAAATTATAATTAA
95632578 CAATTTGATG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.51, C:0.08, G:0.05, T:0.35
Consensus pattern (37 bp):
TATAAGCTTAAACAATTAATTGCAAAATTATAATTAA
Found at i:95632758 original size:50 final size:50
Alignment explanation
Indices: 95632683--95632790 Score: 162
Period size: 50 Copynumber: 2.2 Consensus size: 50
95632673 AACCTAAATG
* * * *
95632683 ATGTGCTCAACTCTGCTCAGTTCAACAGCCTTTCGGATTTATTTTGACTA
1 ATGTGCTCAACTCTACTCAGTTCAACAGCCTTTCAGATTTATTCTAACTA
* *
95632733 ATGTGCTCAACTCTACTTAGTTCAACAGCCTTTCAGATTTATTCTAACTG
1 ATGTGCTCAACTCTACTCAGTTCAACAGCCTTTCAGATTTATTCTAACTA
95632783 ATGTGCTC
1 ATGTGCTC
95632791 CGTTTTGATT
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (50 bp):
ATGTGCTCAACTCTACTCAGTTCAACAGCCTTTCAGATTTATTCTAACTA
Found at i:95635431 original size:20 final size:19
Alignment explanation
Indices: 95635398--95635435 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
95635388 TGAGCAAACT
95635398 TTTTCTTGCTTCTTTATTTA
1 TTTTCTTGCTTC-TTATTTA
95635418 TTTTCTT-CTCTCTTATTT
1 TTTTCTTGCT-TCTTATTT
95635436 TTTACATGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.08, C:0.18, G:0.03, T:0.71
Consensus pattern (19 bp):
TTTTCTTGCTTCTTATTTA
Found at i:95636897 original size:39 final size:39
Alignment explanation
Indices: 95636733--95636915 Score: 170
Period size: 40 Copynumber: 4.6 Consensus size: 39
95636723 TTGAATGCTG
* * * * * * *
95636733 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTATGTCCCGAAGGCATTGTGC-GAGTTACTAAA
* * * *
95636773 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTATG-TCCCGAAGG-CATTGTGCGAGTTACTAAA
* **
95636813 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTATGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
95636853 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTATGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
95636892 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTATGTCCCGAAGGCATT
95636916 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
39 38 0.31
40 74 0.61
41 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
TCCGGGTTATGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:95636935 original size:79 final size:80
Alignment explanation
Indices: 95636769--95636950 Score: 190
Period size: 79 Copynumber: 2.3 Consensus size: 80
95636759 GCTAAGTGAA
* * * *
95636769 TATATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGG
1 TATATCCGGGTTAAG-TCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGG
** ** *
95636833 CATTCGTGCGAGTTGT
65 CATTCGAACGAGGAGC
* * * * *
95636849 TAAATCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGC
1 TATATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGC
*
95636913 ATTTGAACGAGGAGC
66 ATTCGAACGAGGAGC
*
95636928 TATATCC-GGTTAAATCCCGAAGG
1 TATATCCGGGTTAAGTCCCGAAGG
95636951 TACGTGATTT
Statistics
Matches: 83, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
78 14 0.17
79 50 0.60
80 19 0.23
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (80 bp):
TATATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGC
ATTCGAACGAGGAGC
Found at i:95645834 original size:39 final size:39
Alignment explanation
Indices: 95645670--95645852 Score: 170
Period size: 40 Copynumber: 4.6 Consensus size: 39
95645660 TTGAATGCTG
* * * * * * *
95645670 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTATGTCCCGAAGGCATTGTGC-GAGTTACTAAA
* * * *
95645710 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTATG-TCCCGAAGG-CATTGTGCGAGTTACTAAA
* **
95645750 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTATGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
95645790 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTATGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
95645829 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTATGTCCCGAAGGCATT
95645853 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
39 38 0.31
40 74 0.61
41 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
TCCGGGTTATGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:95645872 original size:79 final size:80
Alignment explanation
Indices: 95645706--95645887 Score: 190
Period size: 79 Copynumber: 2.3 Consensus size: 80
95645696 GCTAAGTGAA
* * * *
95645706 TATATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGG
1 TATATCCGGGTTAAG-TCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGG
** ** *
95645770 CATTCGTGCGAGTTGT
65 CATTCGAACGAGGAGC
* * * * *
95645786 TAAATCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGC
1 TATATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGC
*
95645850 ATTTGAACGAGGAGC
66 ATTCGAACGAGGAGC
*
95645865 TATATCC-GGTTAAATCCCGAAGG
1 TATATCCGGGTTAAGTCCCGAAGG
95645888 TACGTGATTT
Statistics
Matches: 83, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
78 14 0.17
79 50 0.60
80 19 0.23
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (80 bp):
TATATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGC
ATTCGAACGAGGAGC
Found at i:95652112 original size:32 final size:32
Alignment explanation
Indices: 95652071--95652135 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
95652061 ATAAACATCC
95652071 TTGAACAATGTAGGCCAAAAGAACCCAGTTTG
1 TTGAACAATGTAGGCCAAAAGAACCCAGTTTG
*
95652103 TTGAACAATGTATGCCAAAAGAACCCAGTTTG
1 TTGAACAATGTAGGCCAAAAGAACCCAGTTTG
95652135 T
1 T
95652136 AAAATCTATG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (32 bp):
TTGAACAATGTAGGCCAAAAGAACCCAGTTTG
Found at i:95653156 original size:19 final size:19
Alignment explanation
Indices: 95653132--95653210 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
95653122 AATCTTTAAG
95653132 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
95653151 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
95653170 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
95653187 GATATGTAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
95653208 GAT
1 GAT
95653211 CTTGTAATCT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
17 17 0.31
19 29 0.53
21 9 0.16
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:95653162 original size:36 final size:36
Alignment explanation
Indices: 95653122--95653209 Score: 110
Period size: 36 Copynumber: 2.4 Consensus size: 36
95653112 ATGGAAATAT
95653122 AATCTTTAAGGATATG-CAATCTTAGATATGATATGC
1 AATCTTTAA-GATATGACAATCTTAGATATGATATGC
*
95653158 AATC-TT-AGATATGATACAATCTTAGATATGATATGT
1 AATCTTTAAGATATG--ACAATCTTAGATATGATATGC
*
95653194 AATCTTGAAGATATGA
1 AATCTTTAAGATATGA
95653210 TCTTGTAATC
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
33 6 0.13
34 1 0.02
35 2 0.04
36 28 0.62
37 1 0.02
38 7 0.16
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.36
Consensus pattern (36 bp):
AATCTTTAAGATATGACAATCTTAGATATGATATGC
Found at i:95653219 original size:22 final size:21
Alignment explanation
Indices: 95653132--95653227 Score: 82
Period size: 19 Copynumber: 4.9 Consensus size: 21
95653122 AATCTTTAAG
*
95653132 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTGAAGATAT
*
95653151 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTGAAGATAT
*
95653170 GATA--CAATCTT--AGATAT
1 GATATGTAATCTTGAAGATAT
95653187 GATATGTAATCTTGAAGATAT
1 GATATGTAATCTTGAAGATAT
* *
95653208 GATCTTGTAATCTTGGAGAT
1 GAT-ATGTAATCTTGAAGAT
95653228 TTAATTTGTA
Statistics
Matches: 69, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
17 17 0.25
19 29 0.42
21 9 0.13
22 14 0.20
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.38
Consensus pattern (21 bp):
GATATGTAATCTTGAAGATAT
Found at i:95654236 original size:22 final size:22
Alignment explanation
Indices: 95654184--95654228 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
95654174 AGATTTCAAA
95654184 ACATAGTGTCCTAACTTACTGG
1 ACATAGTGTCCTAACTTACTGG
95654206 ACATAGTGTCCTAACTTACTGG
1 ACATAGTGTCCTAACTTACTGG
95654228 A
1 A
95654229 TATGGTGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (22 bp):
ACATAGTGTCCTAACTTACTGG
Found at i:95658879 original size:15 final size:14
Alignment explanation
Indices: 95658859--95658906 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 14
95658849 CTATTTCAAA
95658859 AAAAAAAGAAAAAGG
1 AAAAAAA-AAAAAGG
95658874 AAAAAAAATAAAA-G
1 AAAAAAAA-AAAAGG
95658888 AAAAAGAAAAAAATGG
1 AAAAA-AAAAAAA-GG
95658904 AAA
1 AAA
95658907 GGCCAAGGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
14 11 0.38
15 14 0.48
16 4 0.14
ACGTcount: A:0.81, C:0.00, G:0.15, T:0.04
Consensus pattern (14 bp):
AAAAAAAAAAAAGG
Found at i:95658907 original size:20 final size:21
Alignment explanation
Indices: 95658856--95658900 Score: 76
Period size: 20 Copynumber: 2.2 Consensus size: 21
95658846 CTTCTATTTC
95658856 AAAAAA-AAAAGAAAAAGGAA
1 AAAAAATAAAAGAAAAAGGAA
95658876 AAAAAATAAAAGAAAAA-GAA
1 AAAAAATAAAAGAAAAAGGAA
95658896 AAAAA
1 AAAAA
95658901 TGGAAAGGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 14 0.58
21 10 0.42
ACGTcount: A:0.87, C:0.00, G:0.11, T:0.02
Consensus pattern (21 bp):
AAAAAATAAAAGAAAAAGGAA
Found at i:95659990 original size:84 final size:84
Alignment explanation
Indices: 95659849--95660642 Score: 1156
Period size: 84 Copynumber: 9.4 Consensus size: 84
95659839 AAAATTCAGT
95659849 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
95659914 TGGAGCAGATCGAAGACTC
66 TGGAGCAGATCGAAGACTC
* *
95659933 GCCTTAATCCCCTAAGTAGTAGGGGAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
95659998 TGGAGCAGATCGAAGACTC
66 TGGAGCAGATCGAAGACTC
* *
95660017 GCCTTAATCCCCTAAGTAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAACAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
95660082 TGGAGCAGATCGAAGACTC
66 TGGAGCAGATCGAAGACTC
*
95660101 GCCTTAATCCCCTAAGCGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
* * *
95660166 CGAAGCAGCTCGACGACGACTC
66 TGGAGCAGATCGA--A-GACTC
*
95660188 GCCTTAATCCCCTAAGCGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
95660253 TGGAGCAGATCGAAGACTC
66 TGGAGCAGATCGAAGACTC
* * * * *
95660272 ACCTTAATCCCTTAAGCGGTAGGGTAACAGGTTAGATTTGCAGATCTTATCTCCCTAAGTAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
*
95660337 TAGAGCAGATCGAAGACTC
66 TGGAGCAGATCGAAGACTC
* * * *
95660356 GCCTTAATACCCTAAACAGTAGGGTAATAGG-----TTCGCAGATCTTATCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
* *
95660416 CGAAGCAGATCGACGACGACTC
66 TGGAGCAGATCGA--A-GACTC
* *
95660438 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTAAGTAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
95660503 TGGAGCAGATCGAAGAC-C
66 TGGAGCAGATCGAAGACTC
* * *
95660521 AGTCTTAATCCCCTAAACAGTAGGGTAACAGGTTAAATTTGCAAATCTTA--TCCCTAAGCAGTA
1 -GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* *
95660584 GCGGAGTAGATCAAAGAAGA-TGC
65 GTGGAGCAGATC---GAAGACT-C
* *
95660607 TCCTTAACCCCCTAAGCAGTAGGGTAACAGGTTAAA
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAA
95660643 GTATAACAGA
Statistics
Matches: 645, Mismatches: 48, Indels: 33
0.89 0.07 0.05
Matches are distributed among these distances:
79 37 0.06
81 1 0.00
82 55 0.09
83 1 0.00
84 393 0.61
85 39 0.06
86 2 0.00
87 117 0.18
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (84 bp):
GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
TGGAGCAGATCGAAGACTC
Found at i:95660038 original size:41 final size:41
Alignment explanation
Indices: 95659901--95660459 Score: 178
Period size: 43 Copynumber: 13.3 Consensus size: 41
95659891 GATCTTATCT
95659901 CCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATC
1 CCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATC
* * * * * * *
95659942 CCCTAAGTAGTAGGGGAACAGGT-TAA-ATTTGCAGATCTT-ATC
1 CCCTAAGCAGTAGTGGAGCAGATCGAAGA-CT-C-G-CCTTAATC
95659984 TCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATC
1 -CCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATC
* * * * * *
95660026 CCCTAAGTAGTAG-GGTAACAGGT-TAA-ATTTGCAGATCTT-ATC
1 CCCTAAGCAGTAGTGG-AGCAGATCGAAGA-CT-C-G-CCTTAATC
*
95660068 TCCCTAAACAGTAGTGGAGCAGATCGAAGACTCGCCTTAATC
1 -CCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATC
* * * * * *
95660110 CCCTAAGCGGTAG-GGTAACAGGT-TAA-ATTTGCAGATCTT-ATC
1 CCCTAAGCAGTAGTGG-AGCAGATCGAAGA-CT-C-G-CCTTAATC
* * *
95660152 TCCCTAAGCAGTAGCGAAGCAGCTCGACGACGACTCGCCTTAATC
1 -CCCTAAGCAGTAGTGGAGCAGATCGA--A-GACTCGCCTTAATC
* * * * * *
95660197 CCCTAAGCGGTAG-GGTAACAGGT-TAA-ATTTGCAGATCTT-ATC
1 CCCTAAGCAGTAGTGG-AGCAGATCGAAGA-CT-C-G-CCTTAATC
*
95660239 TCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCACCTTAATC
1 -CCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATC
* * * * * * *
95660281 CCTTAAGCGGTAG-GGTAACAGGT--TAGATTTGCAGATCTT-ATC
1 CCCTAAGCAGTAGTGG-AGCAGATCGAAGA-CT-C-G-CCTTAATC
* * *
95660323 TCCCTAAGTAGTAGTAGAGCAGATCGAAGACTCGCCTTAATA
1 -CCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATC
* ** * *
95660365 CCCTAAACAGTAG-GGTAATAGGTTCGCAGA-T---CTT-ATC
1 CCCTAAGCAGTAGTGG-AGCA-GATCGAAGACTCGCCTTAATC
* *
95660402 TCCCTAAGCAGTAGCGAAGCAGATCGACGACGACTCGCCTTAATC
1 -CCCTAAGCAGTAGTGGAGCAGATCGA--A-GACTCGCCTTAATC
95660447 CCCTAAGCAGTAG
1 CCCTAAGCAGTAG
95660460 GGTAACAGGT
Statistics
Matches: 368, Mismatches: 87, Indels: 123
0.64 0.15 0.21
Matches are distributed among these distances:
37 6 0.02
38 17 0.05
39 9 0.02
40 20 0.05
41 101 0.27
42 40 0.11
43 105 0.29
44 53 0.14
45 13 0.04
46 2 0.01
47 1 0.00
48 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24
Consensus pattern (41 bp):
CCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATC
Done.