Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 311 of 313
Found at i:95660297 original size:255 final size:255
Alignment explanation
Indices: 95659849--95660642 Score: 1207
Period size: 255 Copynumber: 3.1 Consensus size: 255
95659839 AAAATTCAGT
95659849 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
* * * *
95659914 TGGAGCAGATCGA--A-GACTCGCCTTAATCCCCTAAGTAGTAGGGGAACAGGTTAAATTTGCAG
66 CGAAGCAGATCGACGACGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAG
* *
95659976 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGTAGTAGGG
131 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCACCTTAATCCCCTAAGCAGTAGGG
*
95660041 TAACAGGTTAAATTTGCAGATCTTATCTCCCTAAACAGTAGTGGAGCAGATCGAAGACTC
196 TAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTC
*
95660101 GCCTTAATCCCCTAAGCGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
* *
95660166 CGAAGCAGCTCGACGACGACTCGCCTTAATCCCCTAAGCGGTAGGGTAACAGGTTAAATTTGCAG
66 CGAAGCAGATCGACGACGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAG
* *
95660231 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCACCTTAATCCCTTAAGCGGTAGGG
131 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCACCTTAATCCCCTAAGCAGTAGGG
* * *
95660296 TAACAGGTTAGATTTGCAGATCTTATCTCCCTAAGTAGTAGTAGAGCAGATCGAAGACTC
196 TAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTC
* * * *
95660356 GCCTTAATACCCTAAACAGTAGGGTAATAGG-----TTCGCAGATCTTATCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
*
95660416 CGAAGCAGATCGACGACGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAG
66 CGAAGCAGATCGACGACGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAG
* * *
95660481 ATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGAC-CAGTCTTAATCCCCTAAACAGTAGG
131 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCA-CCTTAATCCCCTAAGCAGTAGG
* * *
95660545 GTAACAGGTTAAATTTGCAAATCTTA--TCCCTAAGCAGTAGCGGAGTAGATCAAAGAAGA-TGC
195 GTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC---GAAGACT-C
* *
95660607 TCCTTAACCCCCTAAGCAGTAGGGTAACAGGTTAAA
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAA
95660643 GTATAACAGA
Statistics
Matches: 490, Mismatches: 39, Indels: 22
0.89 0.07 0.04
Matches are distributed among these distances:
248 21 0.04
249 2 0.00
250 171 0.35
251 32 0.07
252 74 0.15
254 1 0.00
255 189 0.39
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (255 bp):
GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
CGAAGCAGATCGACGACGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAG
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCACCTTAATCCCCTAAGCAGTAGGG
TAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTC
Found at i:95662761 original size:19 final size:19
Alignment explanation
Indices: 95662739--95662829 Score: 132
Period size: 19 Copynumber: 4.8 Consensus size: 19
95662729 AAGGATAAGC
95662739 AATCTTAGATATGATATGA
1 AATCTTAGATATGATATGA
*
95662758 AATCTTAGATATGATA--C
1 AATCTTAGATATGATATGA
*
95662775 AATCTTAGATATGATATGC
1 AATCTTAGATATGATATGA
95662794 AATCTTAGATATGATATGA
1 AATCTTAGATATGATATGA
95662813 AATCTTGAAGATATGAT
1 AATCTT--AGATATGAT
95662830 CTTGTAATCT
Statistics
Matches: 66, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 16 0.24
19 41 0.62
21 9 0.14
ACGTcount: A:0.41, C:0.08, G:0.15, T:0.36
Consensus pattern (19 bp):
AATCTTAGATATGATATGA
Found at i:95662768 original size:14 final size:15
Alignment explanation
Indices: 95662751--95662807 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
95662741 TCTTAGATAT
95662751 GATATGA-AATCTTA
1 GATATGACAATCTTA
95662765 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
95662782 GATATGATATGCAATCTTA
1 GATATG--A--CAATCTTA
95662801 GATATGA
1 GATATGA
95662808 TATGAAATCT
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
14 6 0.16
16 1 0.03
17 17 0.45
19 14 0.37
ACGTcount: A:0.40, C:0.09, G:0.16, T:0.35
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:95662778 original size:36 final size:36
Alignment explanation
Indices: 95662738--95662809 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
95662728 TAAGGATAAG
95662738 CAATCTTAGATATGATATGAAATCTTAGATATGATA
1 CAATCTTAGATATGATATGAAATCTTAGATATGATA
*
95662774 CAATCTTAGATATGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGATATGAAATCTTAGATATGATA
95662810 TGAAATCTTG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.36
Consensus pattern (36 bp):
CAATCTTAGATATGATATGAAATCTTAGATATGATA
Found at i:95677440 original size:42 final size:42
Alignment explanation
Indices: 95677250--95677836 Score: 590
Period size: 42 Copynumber: 13.7 Consensus size: 42
95677240 NNNNNNNNNN
* *
95677250 GGTGCCGATGGTGGCCGAGGCACCCGCACGACCAAGGGCCTA
1 GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
* * * *
95677292 GGTGCCAATGGT-CTCGAGGCTCTCGCACGACCAAGGGCTTA
1 GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
*
95677333 GGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTA
1 GG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
* * ** *
95677376 GGTTGCCGATAGTGCCCAAGGCTCCCGCAC-ATCCAAGCACCAA
1 GG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTA
*
95677419 GGTGCCGATGGTGCCCGAGGCTCCCGTACGACCAAGGGCCTA
1 GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
* *
95677461 GGTGTCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTA
1 GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
* * * ** * *
95677503 GTTTGCCGATGGTGGCCGAAGCTCCTACATGACCAGGGGCCTA
1 G-GTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
* * * * *
95677546 GGTGCTGATGGTGGCCGAGGCTCCTGCACAACCAAGCGCCTA
1 GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
* * *
95677588 GGTTGCCGATGGTGGCCGAGGCTCCCGCACGACTAGGGGCCTA
1 GG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
* * *
95677631 GGTTCCGATGGTGCCCGAGGCTCTCGCACGACCAACGGCCTA
1 GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
95677673 GGATGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGGCCTA
1 GG-TGCCGATGGTGCCCGAGGCTCCCG--CA--C--G-ACCAAGGGCCTA
** * *
95677723 GGTTGCCGATGGT-ATCGAGACTCCCGCGCGACC-AGGGTCCTA
1 GG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG-CCTA
* * * ** *
95677765 GGTTGCCAATGGTGCCTGAGGCTCTCGCAC-ATCCAAGCACCAA
1 GG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTA
*
95677808 GGTGCCGGTGGTGCCCGAGGCTCCCGCAC
1 GGTGCCGATGGTGCCCGAGGCTCCCGCAC
95677837 AACAAACGTC
Statistics
Matches: 450, Mismatches: 77, Indels: 36
0.80 0.14 0.06
Matches are distributed among these distances:
41 30 0.07
42 207 0.46
43 172 0.38
44 2 0.00
45 3 0.01
47 2 0.00
49 11 0.02
50 23 0.05
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.16
Consensus pattern (42 bp):
GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
Found at i:95677442 original size:85 final size:85
Alignment explanation
Indices: 95677252--95677861 Score: 590
Period size: 85 Copynumber: 7.1 Consensus size: 85
95677242 NNNNNNNNGG
* * * * *
95677252 TGCCGATGGTGGCCGAGGCACCCGCACGACCAAGGGCCTAGGTGCCAATGGT-CTCGAGGCTCTC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTC
* *
95677316 GCACGACCAAGGGCTTAGGT
66 GCACGACCAAGCGCCTAGGT
* * *
95677336 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATAGTGCCCAAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCT
* *
95677401 CGCAC-ATCCAAGCACCAAGG-
65 CGCACGA-CCAAGCGCCTAGGT
* * *
95677421 TGCCGATGGTGCCCGAGGCTCCCGTACGACCAAGGGCCTAGGTGTCGATGGTGCCCGAGGCTCTC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTC
* *
95677486 GCACGACCAAGGGCCTAGTT
66 GCACGACCAAGCGCCTAGGT
* * ** * * *
95677506 TGCCGATGGTGGCCGAAGCTCCTACATGACCAGGGGCCTAGGTGCTGATGGTGGCCGAGGCTC-C
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTC
*
95677570 TGCACAACCAAGCGCCTAGGT
66 -GCACGACCAAGCGCCTAGGT
* * *
95677591 TGCCGATGGTGGCCGAGGCTCCCGCACGACTAGGGGCCTAGGTTCCGATGGTGCCCGAGGCTCTC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTC
*
95677656 GCACGACCAA-CGGCCTAGGA
66 GCACGACCAAGC-GCCTAGGT
* **
95677676 TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGGCCTAGGTTGCCGATGGT-ATCG
1 TGCCGATGGTGCCCGAGGCTCCCG--CA--C--G-ACCAGGGGCCTAGG-TGCCGATGGTGCCCG
* * * *
95677740 AGACTCCCGCGCGACC-AGGGTCCTAGGT
58 AGGCTCTCGCACGACCAAGCG-CCTAGGT
* * * * ** * * *
95677768 TGCCAATGGTGCCTGAGGCTCTCGCAC-ATCCAAGCACCAAGGTGCCGGTGGTGCCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAGGGGCCTAGGTGCCGATGGTGCCCGAGGCTCT
* *
95677832 CGCAC-AACAAACGTCCTAGGT
65 CGCACGACCAAGCG-CCTAGGT
*
95677853 TGCCAATGG
1 TGCCGATGG
95677862 CGTTCAAGGC
Statistics
Matches: 435, Mismatches: 70, Indels: 41
0.80 0.13 0.08
Matches are distributed among these distances:
84 85 0.20
85 255 0.59
86 23 0.05
87 2 0.00
88 1 0.00
89 1 0.00
90 2 0.00
91 3 0.01
92 54 0.12
93 9 0.02
ACGTcount: A:0.19, C:0.33, G:0.33, T:0.16
Consensus pattern (85 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTC
GCACGACCAAGCGCCTAGGT
Found at i:95677721 original size:50 final size:50
Alignment explanation
Indices: 95677661--95677809 Score: 145
Period size: 50 Copynumber: 3.1 Consensus size: 50
95677651 CTCTCGCACG
* *
95677661 ACCAACGGCCTAGGATGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGC
1 ACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGC
** * *
95677711 ACCAAGGGCCTAGGTTGCCGATGGT-ATCGAGACTCCCG--C--GC--G-
1 ACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGC
* * *
95677753 ACC-AGGGTCCTAGGTTGCCAATGGTGCCTGAGGCTCTCGCACATCCAAGC
1 ACCAAGGG-CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGC
95677803 ACCAAGG
1 ACCAAGG
95677810 TGCCGGTGGT
Statistics
Matches: 76, Mismatches: 13, Indels: 19
0.70 0.12 0.18
Matches are distributed among these distances:
41 4 0.05
42 19 0.25
43 9 0.12
45 2 0.03
47 2 0.03
49 11 0.14
50 26 0.34
51 3 0.04
ACGTcount: A:0.21, C:0.34, G:0.30, T:0.15
Consensus pattern (50 bp):
ACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGC
Found at i:95677786 original size:92 final size:92
Alignment explanation
Indices: 95677624--95677809 Score: 250
Period size: 92 Copynumber: 2.0 Consensus size: 92
95677614 GCACGACTAG
* * * *
95677624 GGGCCTAGGTTCCGATGGTGCCCGAGGCTCTCGCACGACCAACGGCCTAGGATGCCGATGGTGCC
1 GGGCCTAGGTTCCGATGGTGACCGAGACTCCCGCACGACCAACGGCCTAGGATGCCAATGGTGCC
95677689 CGAGGCTCCCGCACATCCAAGCACCAA
66 CGAGGCTCCCGCACATCCAAGCACCAA
* * * *
95677716 GGGCCTAGGTTGCCGATGGT-ATCGAGACTCCCGCGCGACC-AGGGTCCTAGGTTGCCAATGGTG
1 GGGCCTAGGTT-CCGATGGTGACCGAGACTCCCGCACGACCAACGG-CCTAGGATGCCAATGGTG
* *
95677779 CCTGAGGCTCTCGCACATCCAAGCACCAA
64 CCCGAGGCTCCCGCACATCCAAGCACCAA
95677808 GG
1 GG
95677810 TGCCGGTGGT
Statistics
Matches: 82, Mismatches: 10, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
91 3 0.04
92 71 0.87
93 8 0.10
ACGTcount: A:0.19, C:0.33, G:0.31, T:0.16
Consensus pattern (92 bp):
GGGCCTAGGTTCCGATGGTGACCGAGACTCCCGCACGACCAACGGCCTAGGATGCCAATGGTGCC
CGAGGCTCCCGCACATCCAAGCACCAA
Found at i:95678107 original size:24 final size:24
Alignment explanation
Indices: 95678075--95678125 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
95678065 CGATATTCCA
95678075 GGATGGCTCACCGGAGCACCGCCG
1 GGATGGCTCACCGGAGCACCGCCG
*
95678099 GGATGGCTCACCGGAGCACTGCCG
1 GGATGGCTCACCGGAGCACCGCCG
95678123 GGA
1 GGA
95678126 ACCTAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.18, C:0.33, G:0.39, T:0.10
Consensus pattern (24 bp):
GGATGGCTCACCGGAGCACCGCCG
Found at i:95678622 original size:58 final size:59
Alignment explanation
Indices: 95678521--95678641 Score: 172
Period size: 58 Copynumber: 2.1 Consensus size: 59
95678511 GAGAGGAACA
* * * *
95678521 GGGACGATTCATTCATTTTTGGGTACCGGACCTGCAACGGTATCCGAATCCTACC-TTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACAGTATCCGAATCCTACCTTTT
* * *
95678579 GGGACGATTCATTCATTATTGGGTATCGAACATGTAACAGTATCCGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACAGTATCCGAATCCTACCTTTT
95678638 GGGA
1 GGGA
95678642 TTGGGGAGGG
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
58 48 0.87
59 7 0.13
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.32
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATGCAACAGTATCCGAATCCTACCTTTT
Found at i:95679594 original size:225 final size:226
Alignment explanation
Indices: 95679201--95679642 Score: 832
Period size: 225 Copynumber: 2.0 Consensus size: 226
95679191 ACGCCCTCGT
* *
95679201 ACCACCACGGCCCCCGTTGTGCGATGTTTCCCGAGGGGGCGGCACGGCCAAGTGTTTAACTAACT
1 ACCACCACCGCCCCCGTTGTGCCATGTTTCCC-AGGGGGCGGCACGGCCAAGTGTTTAACTAACT
95679266 CCTTACACTAAGTCCCCCACTTGGGGACCCCAGGGTCGGGACGTGCAAAAGAACAAGGGTGGATC
65 CCTTACACTAAGTCCCCCACTTGGGGACCCCAGGGTCGGGACGTGCAAAAGAACAAGGGTGGATC
95679331 GGAAGGGAGATGGGGGAGGGACGAATCGAAGCGACAAAGGGCTGAATCTCAGTGGATCGTAGCAG
130 GGAAGGGAGATGGGGGAGGGACGAATCGAAGCGACAAAGGGCTGAATCTCAGTGGATCGTAGCAG
95679396 CAAGGCCACTCTGCCACTTACAATACGCCGAC
195 CAAGGCCACTCTGCCACTTACAATACGCCGAC
95679428 ACCACCACCGCCCCCGTTGTGCCATGTTTCCC-GGGGGCGGCACGGCCAAGTGTTTAACTAACTC
1 ACCACCACCGCCCCCGTTGTGCCATGTTTCCCAGGGGGCGGCACGGCCAAGTGTTTAACTAACTC
95679492 CTTACACTAAGTCCCCCACTTGGGGACCCCAGGGTCGGGACGTGCAAAAGAACAAGGGTGGATCG
66 CTTACACTAAGTCCCCCACTTGGGGACCCCAGGGTCGGGACGTGCAAAAGAACAAGGGTGGATCG
*
95679557 GAAGGGAGATGGGGGAGGGACGAATCGAAGCGACAAAGGGCTGAATCTCAGTGGATCGTGGCAGC
131 GAAGGGAGATGGGGGAGGGACGAATCGAAGCGACAAAGGGCTGAATCTCAGTGGATCGTAGCAGC
*
95679622 AAGGCCACTCTTCCACTTACA
196 AAGGCCACTCTGCCACTTACA
95679643 GTACCCCGTC
Statistics
Matches: 211, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
225 181 0.86
227 30 0.14
ACGTcount: A:0.25, C:0.28, G:0.31, T:0.16
Consensus pattern (226 bp):
ACCACCACCGCCCCCGTTGTGCCATGTTTCCCAGGGGGCGGCACGGCCAAGTGTTTAACTAACTC
CTTACACTAAGTCCCCCACTTGGGGACCCCAGGGTCGGGACGTGCAAAAGAACAAGGGTGGATCG
GAAGGGAGATGGGGGAGGGACGAATCGAAGCGACAAAGGGCTGAATCTCAGTGGATCGTAGCAGC
AAGGCCACTCTGCCACTTACAATACGCCGAC
Found at i:95681960 original size:222 final size:222
Alignment explanation
Indices: 95681574--95682008 Score: 780
Period size: 222 Copynumber: 2.0 Consensus size: 222
95681564 CGCCTTAAGA
*
95681574 GTTTTCTAGCCCGTTGACTCGCACACATGTCAGACTCCTTGGTTCGTGTTTCAAGACTGGCCGAA
1 GTTTTCTAGCCCGTTGACTCGCACACATGTCAGACTCCTTGGTTCGTGTTTCAAGACGGGCCGAA
* * *
95681639 TGGGGAGCCCGCAGGCCGACGCCCGGAGCACACAGGTGCCGAAGCACGCTGAGACGGCGCGTGCT
66 TGGGGAGCCCGCAGGCAGACGCCCAGAGCACACAGGTGCCGAAGCACGCGGAGACGGCGCGTGCT
*
95681704 GGATCCCACGATCGAGGCGACGACGTCTCCACAGGCGTATCAAAGGCCCGGGCTTGGTCTGCCGC
131 GGATCCCACGATCGAGGCGACGACGTCTCCACAGGCGTATCAAAGGCCCGGGCTTGGGCTGCCGC
95681769 CACGACCCGCGTCGGTCCTCCTTACGG
196 CACGACCCGCGTCGGTCCTCCTTACGG
* *
95681796 GTTTTCTAGCCCTTTGACTCGCACACATGTCAGACTCCTTGGTTTGTGTTTCAAGACGGGCCGAA
1 GTTTTCTAGCCCGTTGACTCGCACACATGTCAGACTCCTTGGTTCGTGTTTCAAGACGGGCCGAA
*
95681861 TGGGGAGCCCGCAGGCAGACGCCCAGAGCACGCAGGTGCCGAAGCACGCGGAGACGGCGCGTGCT
66 TGGGGAGCCCGCAGGCAGACGCCCAGAGCACACAGGTGCCGAAGCACGCGGAGACGGCGCGTGCT
*
95681926 GGATCCCACGATCGAGGCGACGACGTCTCCACAGGCGTATCAAAGGCGCGGGCTTGGGCTGCCGC
131 GGATCCCACGATCGAGGCGACGACGTCTCCACAGGCGTATCAAAGGCCCGGGCTTGGGCTGCCGC
*
95681991 CACGACCTGCGTCGGTCC
196 CACGACCCGCGTCGGTCC
95682009 ATGCCCCGAG
Statistics
Matches: 203, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
222 203 1.00
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.18
Consensus pattern (222 bp):
GTTTTCTAGCCCGTTGACTCGCACACATGTCAGACTCCTTGGTTCGTGTTTCAAGACGGGCCGAA
TGGGGAGCCCGCAGGCAGACGCCCAGAGCACACAGGTGCCGAAGCACGCGGAGACGGCGCGTGCT
GGATCCCACGATCGAGGCGACGACGTCTCCACAGGCGTATCAAAGGCCCGGGCTTGGGCTGCCGC
CACGACCCGCGTCGGTCCTCCTTACGG
Found at i:95683949 original size:24 final size:24
Alignment explanation
Indices: 95683917--95683967 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
95683907 TTTCGATATT
*
95683917 CCGGGATGGCTCGCCAGAGCACCG
1 CCGGGATGGCTCACCAGAGCACCG
*
95683941 CCGGGATGGCTCACCGGAGCACCG
1 CCGGGATGGCTCACCAGAGCACCG
95683965 CCG
1 CCG
95683968 AGAACCTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.16, C:0.39, G:0.37, T:0.08
Consensus pattern (24 bp):
CCGGGATGGCTCACCAGAGCACCG
Found at i:95684457 original size:58 final size:59
Alignment explanation
Indices: 95684366--95684486 Score: 181
Period size: 58 Copynumber: 2.1 Consensus size: 59
95684356 GGGAGGGACA
* * * *
95684366 GGGACGATTCCTTCATTGTTGGGTACCGGACATGCAACGGTATCTGAATCCTACC-TTT
1 GGGACAATTCATTCATTATTGGGTACCGAACATGCAACGGTATCTGAATCCTACCTTTT
* *
95684424 GGGACAATTCATTCATTATTGGGTACCGAACATGTAACGGTATCTGAATTCTACCTTTT
1 GGGACAATTCATTCATTATTGGGTACCGAACATGCAACGGTATCTGAATCCTACCTTTT
95684483 GGGA
1 GGGA
95684487 TTAGGGAGGG
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
58 49 0.88
59 7 0.12
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (59 bp):
GGGACAATTCATTCATTATTGGGTACCGAACATGCAACGGTATCTGAATCCTACCTTTT
Found at i:95685185 original size:5 final size:5
Alignment explanation
Indices: 95685147--95685182 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
95685137 AACAAGAAGT
* *
95685147 ATGGC ATGGC ATGGC ATGGC ATGGC ACGGC ACGGC A
1 ATGGC ATGGC ATGGC ATGGC ATGGC ATGGC ATGGC A
95685183 CGGTAGAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.22, C:0.25, G:0.39, T:0.14
Consensus pattern (5 bp):
ATGGC
Found at i:95686122 original size:52 final size:52
Alignment explanation
Indices: 95686044--95686148 Score: 201
Period size: 52 Copynumber: 2.0 Consensus size: 52
95686034 TTCGTATTCG
95686044 TACTGGAAATCAGAATCAAACGAGCTTTTACCCTTTTATTCCACACGAGATT
1 TACTGGAAATCAGAATCAAACGAGCTTTTACCCTTTTATTCCACACGAGATT
*
95686096 TACTGGAAATCAGAATCAAACGAGCTTTTACCCTTTTGTTCCACACGAGATT
1 TACTGGAAATCAGAATCAAACGAGCTTTTACCCTTTTATTCCACACGAGATT
95686148 T
1 T
95686149 CTGTTCTCGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.31
Consensus pattern (52 bp):
TACTGGAAATCAGAATCAAACGAGCTTTTACCCTTTTATTCCACACGAGATT
Found at i:95691966 original size:43 final size:42
Alignment explanation
Indices: 95691850--95691983 Score: 126
Period size: 43 Copynumber: 3.1 Consensus size: 42
95691840 TTCTTTATCT
* * ** * *
95691850 CGCACATCCGAGCCACCAGGGTGCCCCTGCTGCTCGAGGCACC
1 CGCACATCCGAGGCACCAAGGTGCCAATGGTGC-CGAGGCTCC
* * * * *
95691893 CGCACATCCAACG-TCCTAGGTTGCCGATGGTGTCCGAGGCTCC
1 CGCACATCCGAGGCACCAAGG-TGCCAATGGTG-CCGAGGCTCC
95691936 CGCACATCCGAGGCACCAAGGTGCCAATGGTGCCCGAGGCTCC
1 CGCACATCCGAGGCACCAAGGTGCCAATGGTG-CCGAGGCTCC
95691979 CGCAC
1 CGCAC
95691984 GACCAAGGGC
Statistics
Matches: 72, Mismatches: 16, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
42 4 0.06
43 62 0.86
44 6 0.08
ACGTcount: A:0.18, C:0.40, G:0.28, T:0.14
Consensus pattern (42 bp):
CGCACATCCGAGGCACCAAGGTGCCAATGGTGCCGAGGCTCC
Found at i:95692221 original size:43 final size:43
Alignment explanation
Indices: 95692193--95692640 Score: 699
Period size: 43 Copynumber: 10.4 Consensus size: 43
95692183 CCAACGTCCT
* * * ** *
95692193 AGGTTGCCGATGGTGTCCGAGCCTCCCGCAC-ATCCAAGCACCA
1 AGGTTGCCGATGGTGTTCGAGGCTCCCGCACGA-GCAAGGGCCG
** * * * * *
95692236 AGG-TGCTAATGCTGCTCGAGGCTCCCGCAC-ATCCAAGGCACCA
1 AGGTTGCCGATGGTGTTCGAGGCTCCCGCACGA-GCAAGG-GCCG
*
95692279 AGG-TGCCGATGGTG-CCTGAGGCTCCCGCACGAGCAAGGGCCG
1 AGGTTGCCGATGGTGTTC-GAGGCTCCCGCACGAGCAAGGGCCG
95692321 AGGTTGCCGATGGTGTTCGAGGCTCCCGCACGAGCAAGGGCCG
1 AGGTTGCCGATGGTGTTCGAGGCTCCCGCACGAGCAAGGGCCG
95692364 AGGTTGCCGATGGTGTTCGAGGCTCCCGCACGAGCAAGGGCCG
1 AGGTTGCCGATGGTGTTCGAGGCTCCCGCACGAGCAAGGGCCG
95692407 AGGTTGCCGATGGTGTTCGAGGCTCCCGCACGAGCAAGGGCCG
1 AGGTTGCCGATGGTGTTCGAGGCTCCCGCACGAGCAAGGGCCG
95692450 AGGTTGCCGATGGTGTTCGAGGCTCCCGCACGAGCAAGGGCCG
1 AGGTTGCCGATGGTGTTCGAGGCTCCCGCACGAGCAAGGGCCG
95692493 AGGTTGCCGATGGTGTTCGAGGCTCCCGCACGAGCAAGGGCCG
1 AGGTTGCCGATGGTGTTCGAGGCTCCCGCACGAGCAAGGGCCG
95692536 AGGTTGCCGATGGTGTTCGAGGCTCCCGCACGAGCAAGGGCCG
1 AGGTTGCCGATGGTGTTCGAGGCTCCCGCACGAGCAAGGGCCG
95692579 AGGTTGCCGATGGTGTTCGAGGCTCCCGCACGAGCAAGGGCCG
1 AGGTTGCCGATGGTGTTCGAGGCTCCCGCACGAGCAAGGGCCG
95692622 AGGTTGCCGATGGTGTTCG
1 AGGTTGCCGATGGTGTTCG
95692641 CCTAGGTGCC
Statistics
Matches: 385, Mismatches: 15, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
42 34 0.09
43 349 0.91
44 2 0.01
ACGTcount: A:0.17, C:0.29, G:0.37, T:0.17
Consensus pattern (43 bp):
AGGTTGCCGATGGTGTTCGAGGCTCCCGCACGAGCAAGGGCCG
Found at i:95692251 original size:85 final size:86
Alignment explanation
Indices: 95692133--95692308 Score: 223
Period size: 85 Copynumber: 2.1 Consensus size: 86
95692123 TTCTTTATCT
* * ** * *
95692133 CGCACATCCGAGCCACCAGGGTGCCCCTGCTGCTCGAGGCACCCGCACATCCAACG-TCCTAGGT
1 CGCACATCCAAGCCACCAAGGTGCCAATGCTGCTCGAGGCACCCGCACATCCAACGCACCAAGG-
95692197 TGCCGATGGTGTCC-GAGCCTCC
65 TGCCGATGGTG-CCTGAGCCTCC
* * *
95692219 CGCACATCCAAG-CACCAAGGTGCTAATGCTGCTCGAGGCTCCCGCACATCCAAGGCACCAAGGT
1 CGCACATCCAAGCCACCAAGGTGCCAATGCTGCTCGAGGCACCCGCACATCCAACGCACCAAGGT
*
95692283 GCCGATGGTGCCTGAGGCTCC
66 GCCGATGGTGCCTGAGCCTCC
95692304 CGCAC
1 CGCAC
95692309 GAGCAAGGGC
Statistics
Matches: 78, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
84 2 0.03
85 60 0.77
86 16 0.21
ACGTcount: A:0.19, C:0.39, G:0.27, T:0.15
Consensus pattern (86 bp):
CGCACATCCAAGCCACCAAGGTGCCAATGCTGCTCGAGGCACCCGCACATCCAACGCACCAAGGT
GCCGATGGTGCCTGAGCCTCC
Found at i:95692429 original size:129 final size:129
Alignment explanation
Indices: 95692193--95693065 Score: 623
Period size: 129 Copynumber: 6.6 Consensus size: 129
95692183 CCAACGTCCT
* ** * ** * *
95692193 AGGTTGCCGATGGTGTCCGAGCCTCCCGCAC-ATCCAAGCACCAAGG-TGCTAATGCTGCTCGAG
1 AGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAAGGGCCGAGGTTGCCGATGGTGTTCGAG
* * *
95692256 GCTCCCGCAC-ATCCAAGGCACCAAGG-TGCCGATGGTG-CCTGAGGCTCCCGCACGAGCAAGGG
65 GCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGGTGATC-GAGGCTCCCGCACGAGCAAGGG
95692318 CCG
127 CCG
* *
95692321 AGGTTGCCGATGGTGTTCGAGGCTCCCGCACGAGCAAGGGCCGAGGTTGCCGATGGTGTTCGAGG
1 AGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATGGTGTTCGAGG
* * *
95692386 CTCCCGCACGAGCAAGGGCCGAGGTTGCCGATGGTGTTCGAGGCTCCCGCACGAGCAAGGGCCG
66 CTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGATCGAGGCTCCCGCACGAGCAAGGGCCG
* *
95692450 AGGTTGCCGATGGTGTTCGAGGCTCCCGCACGAGCAAGGGCCGAGGTTGCCGATGGTGTTCGAGG
1 AGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATGGTGTTCGAGG
* * *
95692515 CTCCCGCACGAGCAAGGGCCGAGGTTGCCGATGGTGTTCGAGGCTCCCGCACGAGCAAGGGCCG
66 CTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGATCGAGGCTCCCGCACGAGCAAGGGCCG
* *
95692579 AGGTTGCCGATGGTGTTCGAGGCTCCCGCACGAGCAAGGGCCGAGGTTGCCGATGGTGTTCGCCT
1 AGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATGGTGTTCG---
* * * * * * * * * *
95692644 AGGTGCCAATGGTCCCG-AGGCTCTCGCACGACCAAGG--GCCTA-GGTTG-CCAATGG-TGGCC
63 A-G-G-C-----TCCCGCACG-AC-C-AAGGGCCTAGGTTGCCGATGG-TGATCGA-GGCT-CCC
* ** * *
95692703 G-AAGCTCCTACATGACC-
114 GCACG-AGC-A-AGGGCCG
* * * * * * *
95692720 AGG-GGCCTAGGTGCCGATGGTGGCCGAGGCTCCCGTATGACCAAGTGCCTAGGTTGCTGATGGT
1 AGGTTGCC--GATG--G-T-GT--CCGAGGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATGGT
** * *
95692784 GGCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGT-ATCGAGGCTCCCGTACGA-CC
58 GTTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGATCGAGGCTCCCGCACGAGCA
*
95692847 AGGGACCT
123 AGGG-CCG
* * * * * **
95692855 AGGTTGCCGCCGATGGTGCCCGAGGCTCTCGCACAACCAGGGGCCTAGGTT-CCGATGGTGCCCG
1 AGGTT---GCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATGGTGTTCG
* * *
95692919 AGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGT-ATCGAGGCTCCCGTACCGACCAAGGG
63 AGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGATCGAGGCTCCCGCA-CGAGCAAGGG
* *
95692983 GCT
127 CCG
* * * * ** * * *
95692986 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACAAACGTCATAGGTTGCCGATGGCGTCCAAGG
1 AGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATGGTGTTCGAGG
* *
95693050 CTCCAGCACGTCCAAG
66 CTCCCGCACGACCAAG
95693066 TAGCAATGTG
Statistics
Matches: 613, Mismatches: 83, Indels: 98
0.77 0.10 0.12
Matches are distributed among these distances:
127 36 0.06
128 69 0.11
129 256 0.42
130 66 0.11
131 34 0.06
132 6 0.01
133 4 0.01
134 4 0.01
135 13 0.02
136 6 0.01
137 19 0.03
138 4 0.01
139 12 0.02
140 20 0.03
141 5 0.01
142 15 0.02
143 1 0.00
144 2 0.00
145 2 0.00
146 2 0.00
148 37 0.06
ACGTcount: A:0.18, C:0.30, G:0.35, T:0.17
Consensus pattern (129 bp):
AGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATGGTGTTCGAGG
CTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGATCGAGGCTCCCGCACGAGCAAGGGCCG
Found at i:95692696 original size:42 final size:43
Alignment explanation
Indices: 95692640--95693065 Score: 436
Period size: 42 Copynumber: 10.0 Consensus size: 43
95692630 GATGGTGTTC
* *
95692640 GCCTAGG-TGCCAATGGT-CCCGAGGCTCTCGCACGACCAAGG
1 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * * ** * *
95692681 GCCTAGGTTGCCAATGGTGGCCGAAGCTCCTACATGACCAGGG
1 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * * *
95692724 GCCTAGG-TGCCGATGGTGGCCGAGGCTCCCGTATGACCAAGT
1 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* *
95692766 GCCTAGGTTGCTGATGGTGGCCGAGGCTCCCGCACGACCAAGG
1 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
** *
95692809 GCCTAGGTTGCCGATGGT-ATCGAGGCTCCCGTACGACC-AGG
1 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * *
95692850 GACCTAGGTTGCCGCCGATGGTGCCCGAGGCTCTCGCACAACCAGGG
1 G-CCTAGGTT---GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
*
95692897 GCCTAGGTT-CCGATGGTGCCCGAGGCTCTCGCACGACCAAGG
1 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
** *
95692939 GCCTAGGTTGCCGATGGT-ATCGAGGCTCCCGTACCGACCAAGG
1 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCA-CGACCAAGG
* * *
95692982 GGCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACAAACG
1 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * * * * * *
95693024 TCATAGGTTGCCGATGGCGTCCAAGGCTCCAGCACGTCCAAG
1 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
95693066 TAGCAATGTG
Statistics
Matches: 322, Mismatches: 50, Indels: 24
0.81 0.13 0.06
Matches are distributed among these distances:
41 11 0.03
42 142 0.44
43 134 0.42
45 9 0.03
46 23 0.07
47 3 0.01
ACGTcount: A:0.18, C:0.31, G:0.34, T:0.17
Consensus pattern (43 bp):
GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
Found at i:95693033 original size:173 final size:171
Alignment explanation
Indices: 95692640--95693036 Score: 471
Period size: 173 Copynumber: 2.3 Consensus size: 171
95692630 GATGGTGTTC
* * * *
95692640 GCCTAGGTGCCAATGGTCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTT---GCCAATGGTGGC
1 GCCTAGGTGCCGATGGTCCCGAGGCTCCCGCACGACCAAGGACCTAGGTTGCCGCCAATGGTGCC
* * * * *
95692702 CGAAGCTCCTACATGACCAGGGGCCTAGGTGCCGATGGTGGCCGAGGCTCCCGTATGACCAAGTG
66 CGAAGCTCCCACA-GACCAGGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
95692767 CCTAGGTTGCTGATGGTGGCCGAGGCTCCCGCACGACCAAGG
130 CCTAGGTTGCCGATGGTGACCGAGGCTCCCGCACGACCAAGG
** * * *
95692809 GCCTAGGTTGCCGATGGTATCGAGGCTCCCGTACGACCAGGGACCTAGGTTGCCGCCGATGGTGC
1 GCCTAGG-TGCCGATGGTCCCGAGGCTCCCGCACGACCAAGGACCTAGGTTGCCGCCAATGGTGC
* * *
95692874 CCGAGGCTCTCGCACA-ACCAGGGGCCTAGGTTCCGATGGTGCCCGAGGCTCTCGCACGACCAAG
65 CCGAAGCTC-C-CACAGACCAGGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
* *
95692938 GGCCTAGGTTGCCGATGGT-ATCGAGGCTCCCGTACCGACCAAGG
128 GGCCTAGGTTGCCGATGGTGACCGAGGCTCCCGCA-CGACCAAGG
* * * * *
95692982 GGCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACAAACGTCATAGGTTGCCG
1 GCCTAGGTGCCGATGGT-CCCGAGGCTCCCGCACGACCAAGGACCTAGGTTGCCG
95693037 ATGGCGTCCA
Statistics
Matches: 190, Mismatches: 30, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
169 7 0.04
170 36 0.19
172 22 0.12
173 121 0.64
174 1 0.01
175 3 0.02
ACGTcount: A:0.18, C:0.31, G:0.34, T:0.17
Consensus pattern (171 bp):
GCCTAGGTGCCGATGGTCCCGAGGCTCCCGCACGACCAAGGACCTAGGTTGCCGCCAATGGTGCC
CGAAGCTCCCACAGACCAGGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
CTAGGTTGCCGATGGTGACCGAGGCTCCCGCACGACCAAGG
Found at i:95693065 original size:85 final size:86
Alignment explanation
Indices: 95692640--95693065 Score: 440
Period size: 85 Copynumber: 5.0 Consensus size: 86
95692630 GATGGTGTTC
* * *
95692640 GCCTAGGTGCCAATGGT-CCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCAATGGTGGCCG
1 GCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGGCCG
* *
95692704 AAGCTCCTA-CATGACC-AGGG
66 AGGCTCC-AGCACGACCAAGGG
* * * * *
95692724 GCCTAGGTGCCGATGGTGGCCGAGGCTCCCGTATGACCAAGTGCCTAGGTTGCTGATGGTGGCCG
1 GCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGGCCG
*
95692789 AGGCTCCCGCACGACCAA-GG
66 AGGCTCCAGCACGACCAAGGG
** *
95692809 GCCTAGGTTGCCGATGGT-ATCGAGGCTCCCGTACGACC-AGGGACCTAGGTTGCCGCCGATGGT
1 GCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG-CCTAGGTT---GCCGATGGT
* *
95692872 GCCCGAGGCTCTC-GCACAACC-AGGG
61 GGCCGAGGCTC-CAGCACGACCAAGGG
* * **
95692897 GCCTAGGTTCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGT-ATCG
1 GCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGGCCG
* *
95692961 AGGCTCCCGTACCGACCAAGGG
66 AGGCTCCAGCA-CGACCAAGGG
* * * * * * *
95692983 G-CTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACAAACGTCATAGGTTGCCGATGGCGTCCA
1 GCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGGCCG
*
95693047 AGGCTCCAGCACGTCCAAG
66 AGGCTCCAGCACGACCAAG
95693066 TAGCAATGTG
Statistics
Matches: 286, Mismatches: 40, Indels: 31
0.80 0.11 0.09
Matches are distributed among these distances:
83 1 0.00
84 29 0.10
85 157 0.55
86 26 0.09
87 10 0.03
88 58 0.20
89 5 0.02
ACGTcount: A:0.18, C:0.31, G:0.34, T:0.17
Consensus pattern (86 bp):
GCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGGCCG
AGGCTCCAGCACGACCAAGGG
Found at i:95693768 original size:58 final size:59
Alignment explanation
Indices: 95693677--95693797 Score: 192
Period size: 58 Copynumber: 2.1 Consensus size: 59
95693667 GGGAGGGACA
*
95693677 GGGACGATTCATTCATTGTTGGGTACCAGACATGCAACGGTATCTGAATCCTACC-TTT
1 GGGACGATTCATTCATTATTGGGTACCAGACATGCAACGGTATCTGAATCCTACCTTTT
* *
95693735 GGGACGATTCATTCATTATTGGGTACC-GAACATGTAACGGTATCTGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTGGGTACCAG-ACATGCAACGGTATCTGAATCCTACCTTTT
95693794 GGGA
1 GGGA
95693798 TTGGGGAGGG
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
57 1 0.02
58 50 0.86
59 7 0.12
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGTACCAGACATGCAACGGTATCTGAATCCTACCTTTT
Found at i:95694056 original size:26 final size:27
Alignment explanation
Indices: 95694027--95694078 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 27
95694017 GACATTCATG
95694027 TGTCTGAAACAGGGACA-TGTTTCAGA
1 TGTCTGAAACAGGGACACTGTTTCAGA
*
95694053 TGTCTGAAACAGGGACACTTTTTCAG
1 TGTCTGAAACAGGGACACTGTTTCAG
95694079 CCCAACGCTC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 17 0.71
27 7 0.29
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (27 bp):
TGTCTGAAACAGGGACACTGTTTCAGA
Found at i:95694472 original size:10 final size:10
Alignment explanation
Indices: 95694459--95694492 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
95694449 CAAGAAGTAT
*
95694459 GGCATGGCAT
1 GGCATGGCAC
95694469 GGCATGGCAC
1 GGCATGGCAC
*
95694479 GGCACGGCAC
1 GGCATGGCAC
95694489 GGCA
1 GGCA
95694493 GAAAATTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.21, C:0.29, G:0.41, T:0.09
Consensus pattern (10 bp):
GGCATGGCAC
Found at i:95697541 original size:296 final size:296
Alignment explanation
Indices: 95697001--95697592 Score: 1130
Period size: 296 Copynumber: 2.0 Consensus size: 296
95696991 ACATCGTCGC
95697001 GATCCGAACACTTCACCAGACCATTCAATCGGTAGGAGCGACGGGCGGTGTGTACAAAGGGCAGG
1 GATCCGAACACTTCACCAGACCATTCAATCGGTAGGAGCGACGGGCGGTGTGTACAAAGGGCAGG
95697066 GACGTAGTCAACGCGAGCTGATGACTCACGCTTACTAGGAATTCCTCGTTGAAGACCAACAATTG
66 GACGTAGTCAACGCGAGCTGATGACTCACGCTTACTAGGAATTCCTCGTTGAAGACCAACAATTG
95697131 CAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCCAAGGCTATAG
131 CAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCCAAGGCTATAG
*
95697196 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACTTCTAAGGGCATCACAGACCTGT
196 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGT
95697261 TATTGCCTCAAACATCCGTGGCCCAAAACGCCATAG
261 TATTGCCTCAAACATCCGTGGCCCAAAACGCCATAG
*
95697297 GATCCGAACACTTCACCGGACCATTCAATCGGTAGGAGCGACGGGCGGTGTGTACAAAGGGCAGG
1 GATCCGAACACTTCACCAGACCATTCAATCGGTAGGAGCGACGGGCGGTGTGTACAAAGGGCAGG
*
95697362 GACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGAATTCCTCGTTGAAGACCAACAATTG
66 GACGTAGTCAACGCGAGCTGATGACTCACGCTTACTAGGAATTCCTCGTTGAAGACCAACAATTG
95697427 CAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCCAAGGCTATAG
131 CAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCCAAGGCTATAG
95697492 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGT
196 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGT
* * *
95697557 TATTGCCTCAAACTTCCGTGGCCTAAAAGGCCATAG
261 TATTGCCTCAAACATCCGTGGCCCAAAACGCCATAG
95697593 TCCCTCTAAG
Statistics
Matches: 290, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
296 290 1.00
ACGTcount: A:0.28, C:0.27, G:0.25, T:0.21
Consensus pattern (296 bp):
GATCCGAACACTTCACCAGACCATTCAATCGGTAGGAGCGACGGGCGGTGTGTACAAAGGGCAGG
GACGTAGTCAACGCGAGCTGATGACTCACGCTTACTAGGAATTCCTCGTTGAAGACCAACAATTG
CAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCCAAGGCTATAG
ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGT
TATTGCCTCAAACATCCGTGGCCCAAAACGCCATAG
Found at i:95698230 original size:310 final size:311
Alignment explanation
Indices: 95697668--95698289 Score: 1183
Period size: 310 Copynumber: 2.0 Consensus size: 311
95697658 TCATTAATGA
*
95697668 AATTAACCAGACAAATCGCTCCACCAACTAAGAACAGCCATGCACCACCACCCATAGGATCAAGA
1 AATTAACCAGACAAATCGCTCCACCAACTAAGAACAGCCATGCACCACCACCCATAGAATCAAGA
95697733 AAGAGCTCTCAGTCTGTCAATCCTTACTATGTCTGGACCTGGTAAGTTTCCCCGTGTTGAGTCAA
66 AAGAGCTCTCAGTCTGTCAATCCTTACTATGTCTGGACCTGGTAAGTTTCCCCGTGTTGAGTCAA
95697798 ATTAAGCCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCCTTGCG
131 ATTAAGCCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCCTTGCG
95697863 ACCATACTCCCCCCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGC
196 ACCATACTCCCCCCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGC
95697928 AACATCC-ACGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGT
261 AACATCCGACGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGT
*
95697978 AATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA
1 AATTAACCAGACAAATCGCTCCACCAACTAAGAACAGCCATGCACCACCACCCATAGAATCAAGA
95698043 AAGAGCTCTCAGTCTGTCAATCCTTACTATGTCTGGACCTGGTAAGTTTCCCCGTGTTGAGTCAA
66 AAGAGCTCTCAGTCTGTCAATCCTTACTATGTCTGGACCTGGTAAGTTTCCCCGTGTTGAGTCAA
* *
95698108 ATTAAGCCGCAGGTTCCACTCTTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCCTTGCG
131 ATTAAGCCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCCTTGCG
*
95698173 ACCATACTCCCCCCGGAATCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGC
196 ACCATACTCCCCCCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGC
*
95698238 AACATCCGCCGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGT
261 AACATCCGACGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGT
95698289 A
1 A
95698290 TCTGATCGTC
Statistics
Matches: 305, Mismatches: 6, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
310 262 0.86
311 43 0.14
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (311 bp):
AATTAACCAGACAAATCGCTCCACCAACTAAGAACAGCCATGCACCACCACCCATAGAATCAAGA
AAGAGCTCTCAGTCTGTCAATCCTTACTATGTCTGGACCTGGTAAGTTTCCCCGTGTTGAGTCAA
ATTAAGCCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCCTTGCG
ACCATACTCCCCCCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGC
AACATCCGACGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGT
Found at i:95699433 original size:42 final size:43
Alignment explanation
Indices: 95699331--95700548 Score: 1293
Period size: 42 Copynumber: 28.7 Consensus size: 43
95699321 CATGGCCTTA
*
95699331 CCGATGGTGCCCGAGGCTCCCTCACGACCAAGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
*
95699374 CCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTT-
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
*
95699416 CCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
** * * * *
95699459 CCGATGGT-ATCGAAGCTCCCGCGCGATCAGGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
* * * * ** *
95699501 TCGTTGGTGACTGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TG
1 CCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTG
* * * * * *
95699543 CCAATGCTGCTCGAGGCTCCCGCAC-ATCCAA-GGCACCAAGCTG
1 CCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGC-CTAGGTTG
*
95699586 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCGAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
** * ** *
95699629 CCGATGGTGTTCGAGGATCCCGCAC-ATCCAAGCACCAAGG-TG
1 CCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTG
* * * * *
95699671 CCGATGGTGCCTGAGGTTCTCGTACGATCAA-GGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
* * *
95699713 TCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTA
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
* *
95699756 CCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTA
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
*
95699799 CCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGGCTTAGG-TG
1 CCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTG
* *
95699841 CCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCTAAG-TG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
* * * *
95699883 CCAATGGT-CTCGAGGCTCTCGCACGACCAAGGGCCTAGTTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
*
95699925 CCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
* ** * *
95699968 CCGATGGTGCCCGTGGCTCCCGCAC-ATCCAAGCACCAAGG-TA
1 CCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTG
* *
95700010 CCGATGGTGCCTGAGGCTCCCGCACGACCAAGGGCCTAGG-TA
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
* * ** *
95700052 CTGATGCTGCCCGAGGCTCTTGCACGACCAAGGGTCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
* * ** *
95700095 CCGATGGTGGCCGAAGCTCCTACATGACCAAGGGCCTAGG-TG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
* * *
95700137 CCGATGGTGGCCGAGGCTCCCGCACGACCAAGCGCCTCGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
* * * * *
95700180 CTGATGGTGGCTGAGGCTCCCGTACGACCAGGGGCCTAGGTT-
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
*
95700222 CCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTT-
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
*
95700264 CCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTT-
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
*
95700306 CCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
** * * * *
95700349 CCGATGGT-ATCGAAGCTCCCGCGCGATCAGGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
* * * * ** *
95700391 TCGTTGGTGACTGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TG
1 CCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTG
* *
95700433 CTGGTGGTGCCCGAGGCTCCCGCACGACCAAGGTG--TAGG-TG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGG-GCCTAGGTTG
* *
95700474 CCGATGGTGCCCGAGGCTCCCACACGA-CAAGCGTCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAG-GGCCTAGGTTG
* * * * *
95700517 CCGATGGTGTCCAAGTCTCCAGCACGTCCAAG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAG
95700549 CAGCAATGTG
Statistics
Matches: 987, Mismatches: 159, Indels: 57
0.82 0.13 0.05
Matches are distributed among these distances:
40 4 0.00
41 62 0.06
42 503 0.51
43 410 0.42
44 8 0.01
ACGTcount: A:0.18, C:0.32, G:0.33, T:0.17
Consensus pattern (43 bp):
CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
Found at i:95699509 original size:85 final size:86
Alignment explanation
Indices: 95699331--95700548 Score: 1293
Period size: 85 Copynumber: 14.4 Consensus size: 86
95699321 CATGGCCTTA
* *
95699331 CCGATGGTGCCCGAGGCTCCCTCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCTCG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCG
95699396 CACGACCAAGGGCCTAGGTT-
66 CACGACCAAGGGCCTAGGTTG
* ** *
95699416 CCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGT-ATCGAAGCTCCCG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCG
* * *
95699480 CGCGATCAGGGGCCTAGGTTG
66 CACGACCAAGGGCCTAGGTTG
* * * * ** * * * *
95699501 TCGTTGGTGACTGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCTCGAGGCTCCC
1 CCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * *
95699564 GCAC-ATCCAA-GGCACCAAGCTG
65 GCACGA-CCAAGGGC-CTAGGTTG
* ** *
95699586 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATGGTGTTCGAGGATCCCG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCG
** *
95699651 CAC-ATCCAAGCACCAAGG-TG
66 CACGA-CCAAGGGCCTAGGTTG
* * * * * *
95699671 CCGATGGTGCCTGAGGTTCTCGTACGATCAA-GGCCTAGGTTGTCGATGGTGCCCGAGGCTCCCG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCG
* *
95699735 CACGACCAGGGGCCTAGGTTA
66 CACGACCAAGGGCCTAGGTTG
* *
95699756 CCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCG
*
95699821 CAC-ATCCAAGGGCTTAGG-TG
66 CACGA-CCAAGGGCCTAGGTTG
* * * * *
95699841 CCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCTAAG-TGCCAATGGT-CTCGAGGCTCTCG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCG
*
95699904 CACGACCAAGGGCCTAGTTTG
66 CACGACCAAGGGCCTAGGTTG
* *
95699925 CCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGTGGCTCCCG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCG
** * *
95699990 CAC-ATCCAAGCACCAAGG-TA
66 CACGA-CCAAGGGCCTAGGTTG
* * * * **
95700010 CCGATGGTGCCTGAGGCTCCCGCACGACCAAGGGCCTAGG-TACTGATGCTGCCCGAGGCTCTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCG
*
95700074 CACGACCAAGGGTCTAGGTTG
66 CACGACCAAGGGCCTAGGTTG
* * ** * *
95700095 CCGATGGTGGCCGAAGCTCCTACATGACCAAGGGCCTAGG-TGCCGATGGTGGCCGAGGCTCCCG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCG
* *
95700159 CACGACCAAGCGCCTCGGTTG
66 CACGACCAAGGGCCTAGGTTG
* * * * * *
95700180 CTGATGGTGGCTGAGGCTCCCGTACGACCAGGGGCCTAGGTT-CCGATGGTGCCCGAGGCTCTCG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCG
95700244 CACGACCAAGGGCCTAGGTT-
66 CACGACCAAGGGCCTAGGTTG
* *
95700264 CCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTT-CCGATGGTGCCCGAGGCTCTCG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCG
95700328 CACGACCAAGGGCCTAGGTTG
66 CACGACCAAGGGCCTAGGTTG
** * * * * * * * *
95700349 CCGATGGT-ATCGAAGCTCCCGCGCGATCAGGGGCCTAGGTTGTCGTTGGTGACTGAGGCTCCCG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCG
** *
95700413 CAC-ATCCAAGCACCAAGG-TG
66 CACGA-CCAAGGGCCTAGGTTG
* *
95700433 CTGGTGGTGCCCGAGGCTCCCGCACGACCAAGGTG--TAGG-TGCCGATGGTGCCCGAGGCTCCC
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGG-GCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* *
95700495 ACACGA-CAAGCGTCCTAGGTTG
65 GCACGACCAAG-GGCCTAGGTTG
* * * * *
95700517 CCGATGGTGTCCAAGTCTCCAGCACGTCCAAG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAG
95700549 CAGCAATGTG
Statistics
Matches: 932, Mismatches: 173, Indels: 57
0.80 0.15 0.05
Matches are distributed among these distances:
82 4 0.00
83 52 0.06
84 302 0.32
85 471 0.51
86 102 0.11
87 1 0.00
ACGTcount: A:0.18, C:0.32, G:0.33, T:0.17
Consensus pattern (86 bp):
CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCG
CACGACCAAGGGCCTAGGTTG
Found at i:95699574 original size:127 final size:128
Alignment explanation
Indices: 95699331--95700525 Score: 1268
Period size: 127 Copynumber: 9.4 Consensus size: 128
95699321 CATGGCCTTA
* * *
95699331 CCGATGGTGCCCGAGGCTCCCTCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCTCG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGCTCCCG
* *
95699396 CACGACCAAGGGCCTAGGTTCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTG
66 CACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
** * * * * * * *
95699459 CCGATGGT-ATCGAAGCTCCCGCGCGATCAGGGGCCTAGGTTGTCGTTGGTGACTGAGGCTCCCG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGCTCCCG
** * * * * * * *
95699523 CAC-ATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCAA-GGCACCAAGCT
66 CACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGC-CTAGGTT
95699585 G
128 G
* * *
95699586 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATGGTG-TTCGAGGATCCC
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCT-GAGGCTCCC
** * * * * * *
95699650 GCAC-ATCCAAGCACCAAGGTGCCGATGGTGCCTGAGGTTCTCGTACGATCAA-GGCCTAGGTTG
65 GCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
* * * *
95699713 TCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGCTCCCG
* * *
95699778 CACGACCAGGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGGCTTAGG-TG
66 CACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTG
* * * *
95699841 CCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCTAAG-TGCCAATGGT--CTCGAGGCTCTC
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCT-GAGGCTCCC
* *
95699903 GCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTG
65 GCACGACCAAGGGCCTAG-GTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
* ** * *
95699968 CCGATGGTGCCCGTGGCTCCCGCAC-ATCCAAGCACCAAGG-TACCGATGGTGCCTGAGGCTCCC
1 CCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGCTCCC
* * * ** *
95700031 GCACGACCAAGGGCCTAGGTACTGATGCTGCCCGAGGCTCTTGCACGACCAAGGGTCTAGGTTG
65 GCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
* * ** *
95700095 CCGATGGTGGCCGAAGCTCCTACATGACCAAGGGCCTAGG-TGCCGATGGTGGCC-GAGGCTCCC
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGT-GCCTGAGGCTCCC
* * * * * * *
95700158 GCACGACCAAGCGCCTCGGTTGCTGATGGTGGCTGAGGCTCCCGTACGACCAGGGGCCTAGGTT-
65 GCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
* * *
95700222 CCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTT-CCGATGGTGCCCGAGGCTCTCG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGCTCCCG
* *
95700286 CACGACCAAGGGCCTAGGTTCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTG
66 CACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
** * * * * * * *
95700349 CCGATGGT-ATCGAAGCTCCCGCGCGATCAGGGGCCTAGGTTGTCGTTGGTGACTGAGGCTCCCG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGCTCCCG
** * * *
95700413 CAC-ATCCAAGCACCAAGGTGCTGGTGGTGCCCGAGGCTCCCGCACGACCAAGGTG--TAGG-TG
66 CACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG-GCCTAGGTTG
* *
95700474 CCGATGGTGCCCGAGGCTCCCACACGA-CAAGCGTCCTAGGTTGCCGATGGTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAG-GGCCTAGGTTGCCGATGGTG
95700526 TCCAAGTCTC
Statistics
Matches: 880, Mismatches: 158, Indels: 60
0.80 0.14 0.05
Matches are distributed among these distances:
125 14 0.02
126 169 0.19
127 461 0.52
128 226 0.26
129 10 0.01
ACGTcount: A:0.18, C:0.32, G:0.33, T:0.17
Consensus pattern (128 bp):
CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGCTCCCG
CACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
Found at i:95700764 original size:24 final size:24
Alignment explanation
Indices: 95700737--95700788 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
95700727 TCGATATTCT
*
95700737 GGGATGGCTCGTCGGAGCACCGCC
1 GGGATGGCTCGTCGCAGCACCGCC
95700761 GGGATGGCTCGTCGCAGCACCGCC
1 GGGATGGCTCGTCGCAGCACCGCC
95700785 GGGA
1 GGGA
95700789 ACCTAACCGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.13, C:0.33, G:0.42, T:0.12
Consensus pattern (24 bp):
GGGATGGCTCGTCGCAGCACCGCC
Found at i:95701245 original size:58 final size:59
Alignment explanation
Indices: 95701181--95701301 Score: 165
Period size: 58 Copynumber: 2.1 Consensus size: 59
95701171 GGGAGGGACA
* *
95701181 GGGACGATTCATTCATTGTTCGGTACCGGACATGCAACGGTATCCGAA-TCTTACC-TTT
1 GGGACGATTCATTCATTATTCGGTACCGAACATGCAACGGTATCCGAATTC-TACCTTTT
* * * *
95701239 GGGACGATTCATTTATTATTGGGTACCGAACATGTAACGGTATCTGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTCGGTACCGAACATGCAACGGTATCCGAATTCTACCTTTT
95701298 GGGA
1 GGGA
95701302 TTGGGGAGGG
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
58 46 0.84
59 9 0.16
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTCGGTACCGAACATGCAACGGTATCCGAATTCTACCTTTT
Found at i:95709435 original size:23 final size:23
Alignment explanation
Indices: 95709409--95709478 Score: 58
Period size: 23 Copynumber: 3.2 Consensus size: 23
95709399 ATGGTGCCCG
95709409 AGGTTCTCGCACGATCAAGGCCT
1 AGGTTCTCGCACGATCAAGGCCT
*** * *
95709432 AGG-T-T-GC-CGATGGTGCCCG
1 AGGTTCTCGCACGATCAAGGCCT
*
95709451 AGGTTCTCACACGATCAAGGCCT
1 AGGTTCTCGCACGATCAAGGCCT
95709474 AGGTT
1 AGGTT
95709479 ACTGATGGTG
Statistics
Matches: 32, Mismatches: 11, Indels: 8
0.63 0.22 0.16
Matches are distributed among these distances:
19 10 0.31
20 3 0.09
21 2 0.06
22 2 0.06
23 15 0.47
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (23 bp):
AGGTTCTCGCACGATCAAGGCCT
Found at i:95709440 original size:42 final size:42
Alignment explanation
Indices: 95709194--95710220 Score: 883
Period size: 42 Copynumber: 24.5 Consensus size: 42
95709184 CCCTGCTGCT
* * *
95709194 CGAGGCACCCGCAC-ATCCAACGTCCTAGGTTGCCGATGGTGTC
1 CGAGGCTCCCGCACGA-CCAA-GGCCTAGGTTGCCGATGGTGCC
* * * * *
95709237 CGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCT
1 CGAGGCTCCCGCACGA-CCAAG-GCCTAGGTTGCCGATGGTGCC
*
95709279 CGAGGCTCCCGCAC-ATCCAAGGCACCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGG--CCTAGGTTGCCGATGGTGCC
* * **
95709322 CGAGGCTCCCGCACAACCAAGGGCCGAGGTTGCCGATGGTGTT
1 CGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTGCC
* * *
95709365 CGAGGCTCCTGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAG-GCCTAGGTTGCCGATGGTGCC
* * *
95709407 CGAGGTTCTCGCACGATCAAGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGTGCC
* * * * * *
95709449 CGAGGTTCTCACACGATCAAGGCCTAGGTTACTGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGTGCC
* * *
95709491 CCAGGCTCCCGTACGACCAGGTGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAG-GCCTAGGTTGCCGATGGTGCC
* *
95709534 CGAGGCTCCCGTCA--TCCAAGGGCCTAGG-TGCCGATGGTGGC
1 CGAGGCTCCCG-CACGACCAA-GGCCTAGGTTGCCGATGGTGCC
95709575 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGT-CC
1 CGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTGCC
* * *
95709616 CGAGGCTCTCGCACGACCAACGGCCAAGGTTACCGATGGTGCC
1 CGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTGCC
* * *
95709659 TGAGGCTCCCGCATGACCAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCA-AGGCCTAGGTTGCCGATGGTGCC
* * *
95709702 CGAGGCTCCCCCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAG-GCCTAGGTTGCCGATGGTGCC
95709744 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTGCC
* * * * *
95709786 CGAGGCTCTCACACGACCAAGGGCCTAAGTTGTCGATGGTGGC
1 CGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTGCC
* ** * *
95709829 CGAAGCTCCTACATGACC-A-G----GG--GCCTA-GGTG-C
1 CGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGTGCC
* *
95709861 CGAGGCTCCTGCACGACCAAGCGCCTAGGTTGCCGATGGTGGC
1 CGAGGCTCCCGCACGACCAAG-GCCTAGGTTGCCGATGGTGCC
* * *
95709904 CGAGGCCCCCGCACGGCCAGGGGCCTAGGTT-CCGATGGTGCC
1 CGAGGCTCCCGCACGACCA-AGGCCTAGGTTGCCGATGGTGCC
* *
95709946 CGAGGCTCCCGTACGACCAAGGGCCTATGTT-CCGATGGTGCC
1 CGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTGCC
** * **
95709988 CGAGGCTCTTGCACGACCAAGGGCCTAGGTTGTCGATGGT-AT
1 CGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTGCC
* * *
95710030 CGAGGCCCCCGCGCGACCAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCA-AGGCCTAGGTTGCCGATGGTGCC
* * *
95710073 CGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGGTGGTGCC
1 CGAGGCTCCCGCACGA-CCAAG-GCCTAGGTTGCCGATGGTGCC
*
95710115 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCTGATGGTGCC
1 CGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTGCC
* * * * * *
95710157 CGAGTCTCCCGCACGACAAACGTCCTAGGCTGCCGATGGCGTC
1 CGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTGCC
* * *
95710200 CAAGGCTCCAGCACGTCCAAG
1 CGAGGCTCCCGCACGACCAAG
95710221 AAGCAATGTG
Statistics
Matches: 814, Mismatches: 126, Indels: 89
0.79 0.12 0.09
Matches are distributed among these distances:
32 16 0.02
33 5 0.01
34 3 0.00
35 1 0.00
36 1 0.00
39 2 0.00
40 3 0.00
41 59 0.07
42 433 0.53
43 286 0.35
44 5 0.01
ACGTcount: A:0.18, C:0.34, G:0.32, T:0.16
Consensus pattern (42 bp):
CGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGTGCC
Found at i:95709523 original size:169 final size:167
Alignment explanation
Indices: 95709194--95710236 Score: 938
Period size: 169 Copynumber: 6.2 Consensus size: 167
95709184 CCCTGCTGCT
* * * *
95709194 CGAGGCACCCGCACATCCAA-CGTCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAA
1 CGAGGCTCCCGCACATCCAAGC-ACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAA
* * * * * * * * * *
95709257 GCACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCAAGGCACCAAGGTGCCGATGGTGC
63 G-GCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGA-CCAAGG-GCCTAGGTTCTGATGGTGC
* * **
95709321 CCGAGGCTCCCGCACAACCAAGGGCCGAGGTTGCCGATGGTGTT
125 CCGAGGCTCCCGCACGACC-AGGGCCTAGGTTGCCGATGGTGCC
* * * *
95709365 CGAGGCTCCTGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCTCGCACGATCAAGGC
1 CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGC
* * * *
95709430 CTAGGTTGCCGATGGTGCCCGAGGTTCTCACACGATCAA-GGCCTAGGTTACTGATGGTGCCCCA
66 CTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTT-CTGATGGTGCCCGA
*
95709494 GGCTCCCGTACGACCAGGTGCCTAGGTTGCCGATGGTGCC
129 GGCTCCCGCACGACCAGG-GCCTAGGTTGCCGATGGTGCC
* ** * *
95709534 CGAGGCTCCCG-TCATCCAAGGGCCTAGGTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGG
1 CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA-GG
* * * *
95709598 CCTAGGTGCCGATGGT-CCCGAGGCTCTCGCACGACCAACGGCCAAGGTTACCGATGGTGCCTGA
65 CCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTT-CTGATGGTGCCCGA
*
95709662 GGCTCCCGCATGACCAGGGGCCTAGGTTGCCGATGGTGCC
129 GGCTCCCGCACGACCA-GGGCCTAGGTTGCCGATGGTGCC
*
95709702 CGAGGCTCCCCCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA-GG
* * * *
95709767 CCTAGGTGCCGATGGTGCCCGAGGCTCTCACACGACCAAGGGCCTAAGTTGTCGATGGTGGCCGA
65 CCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTCT-GATGGTGCCCGA
* ** * *
95709832 AGCTCCTACATGACCA--G----GG--GCCTA-GGTG-C
129 GGCTCCCGCACGACCAGGGCCTAGGTTGCCGATGGTGCC
* * * * * * *
95709861 CGAGGCTCCTGCACGA-CCAAGCGCCTAGGTTGCCGATGGTGGCCGAGGCCCCCGCACGGCCAGG
1 CGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCA-A
* * * * *
95709925 GGCCTAGGTTCCGATGGTGCCCGAGGCTCCCGTACGACCAAGGGCCTATGTTCCGATGGTGCCCG
63 GGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTCTGATGGTGCCCG
** * **
95709990 AGGCTCTTGCACGACCAAGGGCCTAGGTTGTCGATGGT-AT
128 AGGCTCCCGCACGACC-AGGGCCTAGGTTGCCGATGGTGCC
* * * ** *
95710030 CGAGGCCCCCGCGCGA-CCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAA
1 CGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAA
* * * * *
95710093 GCACCAAGGTGCCGGTGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCTGATGGTGCCC
63 G-GCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTCTGATGGTGCCC
* * * * * * *
95710158 GAGTCTCCCGCACGACAAACGTCCTAGGCTGCCGATGGCGTC
127 GAGGCTCCCGCACGAC-CAGGGCCTAGGTTGCCGATGGTGCC
* * * * * *
95710200 CAAGGCTCCAGCACGTCCAAGAAGCAATGTGCCGATG
1 CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATG
95710237 CTCCCGTACC
Statistics
Matches: 716, Mismatches: 125, Indels: 64
0.79 0.14 0.07
Matches are distributed among these distances:
159 46 0.06
160 82 0.11
161 4 0.01
162 1 0.00
163 2 0.00
166 2 0.00
167 20 0.03
168 131 0.18
169 281 0.39
170 121 0.17
171 25 0.03
172 1 0.00
ACGTcount: A:0.18, C:0.34, G:0.32, T:0.16
Consensus pattern (167 bp):
CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGC
CTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTCTGATGGTGCCCGAGG
CTCCCGCACGACCAGGGCCTAGGTTGCCGATGGTGCC
Found at i:95709525 original size:127 final size:125
Alignment explanation
Indices: 95709194--95710213 Score: 880
Period size: 127 Copynumber: 8.1 Consensus size: 125
95709184 CCCTGCTGCT
* * *
95709194 CGAGGCACCCGCACATCCAACGTCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAG
1 CGAGGCTCCCGCACAT-CAA-GACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG
** * * * * *
95709258 CACCAAGG-TGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCAAGGCACCAAGG-TGCCGATGGTG
62 GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG--CCTAGGTTGCCGATGGTG
95709320 CC
124 CC
* * * ** *
95709322 CGAGGCTCCCGCACAACCAAGGGCCGAGGTTGCCGATGGTGTTCGAGGCTCCTGCAC-ATCCAAG
1 CGAGGCTCCCGCAC-ATCAA-GACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG
** * * * *
95709386 CACCAAGG-TGCCGATGGTGCCCGAGGTTCTCGCACGATCAAGGCCTAGGTTGCCGATGGTGCC
62 GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGTGCC
* * * * * * * *
95709449 CGAGGTTCTCACACGATCAAGGCCTAGGTTACTGATGGTGCCCCAGGCTCCCGTACGACC-AGGT
1 CGAGGCTCCCGCAC-ATCAAGACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG-
* *
95709513 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTCA--TCCAAGGGCCTAGG-TGCCGATGGTGGC
63 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCG-CACGACCAA-GGCCTAGGTTGCCGATGGTGCC
* * * *
95709575 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGT-CCCGAGGCTCTCGCACGACCAACGG
1 CGAGGCTCCCGCAC-ATCAA-GACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * * *
95709639 CCAAGGTTACCGATGGTGCCTGAGGCTCCCGCATGACCAGGGGCCTAGGTTGCCGATGGTGCC
64 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCA-AGGCCTAGGTTGCCGATGGTGCC
* *
95709702 CGAGGCTCCCCCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CGAGGCTCCCGCACAT-CAAG-ACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * * *
95709767 CCTAGG-TGCCGATGGTGCCCGAGGCTCTCACACGACCAAGGGCCTAAGTTGTCGATGGTGGC
64 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTGCC
* * * * * *
95709829 CGAAGCT-CC-TACAT---GACC-AGGGGCCTA-GGTG-CCGAGGCTCCTGCACGACCAAGCGCC
1 CGAGGCTCCCGCACATCAAGACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCC
* * * *
95709886 TAGGTTGCCGATGGTGGCCGAGGCCCCCGCACGGCCAGGGGCCTAGGTT-CCGATGGTGCC
66 TAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCA-AGGCCTAGGTTGCCGATGGTGCC
* * * * * **
95709946 CGAGGCTCCCGTACGACCAAGGGCCTATGTTCCGATGGTGCCCGAGGCTCTTGCACGACCAAGGG
1 CGAGGCTCCCGCAC-ATCAA-GACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* ** * * *
95710011 CCTAGGTTGTCGATGGT-ATCGAGGCCCCCGCGCGACCAGGGGCCTAGGTTGCCGATGGTGCC
64 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCA-AGGCCTAGGTTGCCGATGGTGCC
* *
95710073 CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGGTGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CGAGGCTCCCGCACAT-CAAG-ACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * * * * *
95710138 CCTAGG-TGCTGATGGTGCCCGAGTCTCCCGCACGACAAACGTCCTAGGCTGCCGATGGCGTC
64 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTGCC
* *
95710200 CAAGGCTCCAGCAC
1 CGAGGCTCCCGCAC
95710214 GTCCAAGAAG
Statistics
Matches: 737, Mismatches: 120, Indels: 71
0.79 0.13 0.08
Matches are distributed among these distances:
117 43 0.06
118 42 0.06
119 10 0.01
120 4 0.01
121 1 0.00
124 5 0.01
125 57 0.08
126 139 0.19
127 314 0.43
128 120 0.16
129 2 0.00
ACGTcount: A:0.18, C:0.34, G:0.32, T:0.16
Consensus pattern (125 bp):
CGAGGCTCCCGCACATCAAGACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCC
TAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGTGCC
Found at i:95709762 original size:85 final size:85
Alignment explanation
Indices: 95709194--95710220 Score: 892
Period size: 85 Copynumber: 12.2 Consensus size: 85
95709184 CCCTGCTGCT
* * *
95709194 CGAGGCACCCGCAC-ATCCAA-CGTCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCA
1 CGAGGCTCCCGCACGA-CCAAGCG-CCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCA
** * * * *
95709256 AGCACCAAGG-TGCCAATGCTGCT
62 AGGGCCTAGGTTGCCGATGGTGCC
* *
95709279 CGAGGCTCCCGCAC-ATCCAAGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACAACCAAG
1 CGAGGCTCCCGCACGA-CCAA-GCGCCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
* **
95709343 GGCCGAGGTTGCCGATGGTGTT
64 GGCCTAGGTTGCCGATGGTGCC
* * * * *
95709365 CGAGGCTCCTGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCTCGCACGATCAA-G
1 CGAGGCTCCCGCACGA-CCAAGCGCCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
95709428 GCCTAGGTTGCCGATGGTGCC
65 GCCTAGGTTGCCGATGGTGCC
* * * * * * * * *
95709449 CGAGGTTCTCACACGATCAAG-GCCTAGGTTACTGATGGTGCCCCAGGCTCCCGTACGACC-AGG
1 CGAGGCTCCCGCACGACCAAGCGCCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
95709512 TGCCTAGGTTGCCGATGGTGCC
65 -GCCTAGGTTGCCGATGGTGCC
* * * *
95709534 CGAGGCTCCCGTCA--TCCAAGGGCCTAGGTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGG
1 CGAGGCTCCCG-CACGACCAAGCGCCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
95709597 GCCTAGG-TGCCGATGGT-CC
65 GCCTAGGTTGCCGATGGTGCC
* * * * *
95709616 CGAGGCTCTCGCACGACCAA-CGGCCAAGGTTACCGATGGTGCCTGAGGCTCCCGCATGACCAGG
1 CGAGGCTCCCGCACGACCAAGC-GCCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
95709680 GGCCTAGGTTGCCGATGGTGCC
64 GGCCTAGGTTGCCGATGGTGCC
* *
95709702 CGAGGCTCCCCCAC-ATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
1 CGAGGCTCCCGCACGA-CCAAGCGCCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
95709766 GCCTAGG-TGCCGATGGTGCC
65 GCCTAGGTTGCCGATGGTGCC
* * * * * * * ** *
95709786 CGAGGCTCTCACACGACCAAGGGCCTAAGTTGTCGATGGTGGCCGAAGCTCCTACATGACC-A--
1 CGAGGCTCCCGCACGACCAAGCGCC-AAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
*
95709848 G----GG--GCCTA-GGTG-C
65 GCCTAGGTTGCCGATGGTGCC
* * * * * *
95709861 CGAGGCTCCTGCACGACCAAGCGCCTAGGTTGCCGATGGTGGCCGAGGCCCCCGCACGGCCAGGG
1 CGAGGCTCCCGCACGACCAAGCGCCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
95709926 GCCTAGGTT-CCGATGGTGCC
65 GCCTAGGTTGCCGATGGTGCC
* * * * * **
95709946 CGAGGCTCCCGTACGACCAAGGGCCTATGTTCCGATGGTGCCCGAGGCTCTTGCACGACCAAGGG
1 CGAGGCTCCCGCACGACCAAGCGCCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* **
95710011 CCTAGGTTGTCGATGGT-AT
66 CCTAGGTTGCCGATGGTGCC
* * * * *
95710030 CGAGGCCCCCGCGCGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAG
1 CGAGGCTCCCGCACGACCAAGCGCCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG
** * *
95710094 CACCAAGG-TGCCGGTGGTGCC
64 GGCCTAGGTTGCCGATGGTGCC
* * * * * * *
95710115 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCTGATGGTGCCCGAGTCTCCCGCACGACAAACGT
1 CGAGGCTCCCGCACGACCAAGCGCCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
95710180 CCTAGGCTGCCGATGGCGTC
66 CCTAGGTTGCCGATGGTGCC
* * *
95710200 CAAGGCTCCAGCACGTCCAAG
1 CGAGGCTCCCGCACGACCAAG
95710221 AAGCAATGTG
Statistics
Matches: 773, Mismatches: 130, Indels: 78
0.79 0.13 0.08
Matches are distributed among these distances:
74 2 0.00
75 46 0.06
76 4 0.01
77 4 0.01
78 3 0.00
81 2 0.00
82 15 0.02
83 29 0.04
84 272 0.35
85 333 0.43
86 61 0.08
87 2 0.00
ACGTcount: A:0.18, C:0.34, G:0.32, T:0.16
Consensus pattern (85 bp):
CGAGGCTCCCGCACGACCAAGCGCCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
CCTAGGTTGCCGATGGTGCC
Found at i:95709869 original size:32 final size:33
Alignment explanation
Indices: 95709827--95709896 Score: 88
Period size: 32 Copynumber: 2.2 Consensus size: 33
95709817 GTCGATGGTG
* * *
95709827 GCCGAAGCTCCTACATGACCAGGGGCCTAGG-T
1 GCCGAAGCTCCTACACGACCAAGCGCCTAGGTT
* *
95709859 GCCGAGGCTCCTGCACGACCAAGCGCCTAGGTT
1 GCCGAAGCTCCTACACGACCAAGCGCCTAGGTT
95709892 GCCGA
1 GCCGA
95709897 TGGTGGCCGA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
32 26 0.81
33 6 0.19
ACGTcount: A:0.20, C:0.34, G:0.31, T:0.14
Consensus pattern (33 bp):
GCCGAAGCTCCTACACGACCAAGCGCCTAGGTT
Found at i:95709876 original size:75 final size:75
Alignment explanation
Indices: 95709780--95709938 Score: 194
Period size: 75 Copynumber: 2.1 Consensus size: 75
95709770 AGGTGCCGAT
* * * * *
95709780 GGTGCCCGAGGCTCTCACACGACCAAGGGCCTAAGTTGTCGATGGTGGCCGAAGCTCCTACATGA
1 GGTG-CCGAGGCTCTCACACGACCAAGCGCCTAAGTTGCCGATGGTGGCCGAAGCCCCCACACGA
95709845 CCAGGGGCCTA
65 CCAGGGGCCTA
* * * * *
95709856 GGTGCCGAGGCTC-CTGCACGACCAAGCGCCTAGGTTGCCGATGGTGGCCGAGGCCCCCGCACGG
1 GGTGCCGAGGCTCTC-ACACGACCAAGCGCCTAAGTTGCCGATGGTGGCCGAAGCCCCCACACGA
95709920 CCAGGGGCCTA
65 CCAGGGGCCTA
*
95709931 GGTTCCGA
1 GGTGCCGA
95709939 TGGTGCCCGA
Statistics
Matches: 71, Mismatches: 11, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
74 1 0.01
75 66 0.93
76 4 0.06
ACGTcount: A:0.18, C:0.33, G:0.35, T:0.15
Consensus pattern (75 bp):
GGTGCCGAGGCTCTCACACGACCAAGCGCCTAAGTTGCCGATGGTGGCCGAAGCCCCCACACGAC
CAGGGGCCTA
Found at i:95710262 original size:371 final size:370
Alignment explanation
Indices: 95709493--95710247 Score: 998
Period size: 371 Copynumber: 2.0 Consensus size: 370
95709483 ATGGTGCCCC
* * * * * *
95709493 AGGCTCCCGTACGACCAGGTGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTCATCCAAGGGCC
1 AGGCTCCCGCACCACCAAGCGCCTAGGTTGCCGATGGTGCCCGAGGCCCCCGTCAGCCAAGGGCC
*
95709558 TAGGTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTCCCGAGGCT
66 TAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTCCCGAGGCT
* * *
95709623 CTCGCACGACCAACGGCCAAGGTTACCGATGGTGCCTGAGGCTCCCGCATGACCAGGGGCCTAGG
131 CTCGCACGACCAACGGCCAAGGTTACCGATGGTACCTGAGGCCCCCGCACGACCAGGGGCCTAGG
95709688 TTGCCGATGGTGCCCGAGGCTCCCCCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCC
196 TTGCCGATGGTGCCCGAGGCTCCCCCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCC
* * * *
95709753 CGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCACACGACCAAGGGCCTAAGTTG
261 CGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCACACGACAAACGGCCTAAGCTG
* * * ** *
95709818 TCGATGGTGGCCGAAGCTCCTACATGACCAGGGGCCTAGGTGCCG
326 CCGATGGCGGCCGAAGCTCCTACACGACCAGAAGCCAAGGTGCCG
* * * *
95709863 AGGCTCCTGCACGACCAAGCGCCTAGGTTGCCGATGGTGGCCGAGGCCCCCG-CACGGCCAGGGG
1 AGGCTCCCGCACCACCAAGCGCCTAGGTTGCCGATGGTGCCCGAGGCCCCCGTCA--GCCAAGGG
* * * *
95709927 CCTAGGTTCCGATGGTGCCCGAGGCTCCCGTACGACCAAGGGCCTATGTTCCGATGGTGCCCGAG
64 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGT-CCCGAG
* * * ** * *
95709992 GCTCTTGCACGACCAAGGGCCTAGGTTGTCGATGGTATC-GAGGCCCCCGCGCGACCAGGGGCCT
128 GCTCTCGCACGACCAACGGCCAAGGTTACCGATGGTACCTGAGGCCCCCGCACGACCAGGGGCCT
* *
95710056 AGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGGTGGTGCCCGAGGC
193 AGGTTGCCGATGGTGCCCGAGGCTCCCCCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGC
* * * * *
95710121 TCCCGCACGACCAAGGGCCTAGGTGCTGATGGTGCCCGAGTCTCCCGCACGACAAACGTCCTAGG
258 TCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCACACGACAAACGGCCTAAG
* * *
95710186 CTGCCGATGGCGTCC-AAGGCTCC-AGCACGTCCAAGAAG-CAATGTGCCG
323 CTGCCGATGGCGGCCGAA-GCTCCTA-CACGACC-AGAAGCCAAGGTGCCG
* *
95710234 ATGCTCCCGTACCA
1 AGGCTCCCGCACCA
95710248 TCGACGTCCT
Statistics
Matches: 332, Mismatches: 47, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
369 2 0.01
370 49 0.15
371 240 0.72
372 41 0.12
ACGTcount: A:0.18, C:0.34, G:0.33, T:0.15
Consensus pattern (370 bp):
AGGCTCCCGCACCACCAAGCGCCTAGGTTGCCGATGGTGCCCGAGGCCCCCGTCAGCCAAGGGCC
TAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTCCCGAGGCT
CTCGCACGACCAACGGCCAAGGTTACCGATGGTACCTGAGGCCCCCGCACGACCAGGGGCCTAGG
TTGCCGATGGTGCCCGAGGCTCCCCCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCC
CGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCACACGACAAACGGCCTAAGCTG
CCGATGGCGGCCGAAGCTCCTACACGACCAGAAGCCAAGGTGCCG
Found at i:95710441 original size:24 final size:24
Alignment explanation
Indices: 95710409--95710484 Score: 100
Period size: 24 Copynumber: 3.2 Consensus size: 24
95710399 TCGATATTCT
95710409 GGGATGGCTCGCCGAAGCACCGCC
1 GGGATGGCTCGCCGAAGCACCGCC
* *
95710433 GGGATGGCTCGCCGGAGCACCGTC
1 GGGATGGCTCGCCGAAGCACCGCC
* *
95710457 GGGATAGATCGCC-AGAGCACCGCC
1 GGGATGGCTCGCCGA-AGCACCGCC
95710481 GGGA
1 GGGA
95710485 ACCTAACCGG
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.18, C:0.33, G:0.39, T:0.09
Consensus pattern (24 bp):
GGGATGGCTCGCCGAAGCACCGCC
Found at i:95710970 original size:58 final size:59
Alignment explanation
Indices: 95710879--95710999 Score: 181
Period size: 58 Copynumber: 2.1 Consensus size: 59
95710869 GGGAGGGACA
* * *
95710879 GGGACGATTCATTCATTGTTGGGAACCGGACATGCAACGGTATCTGAATCCTACC-TTT
1 GGGACGATTCATTCATTATTGGGAACCGAACATGCAACGGTATCCGAATCCTACCATTT
* * *
95710937 GGGACGATTCATTCATTATTGGGTACCGAACATGTAACGGTATCCGAATTCTACCATTT
1 GGGACGATTCATTCATTATTGGGAACCGAACATGCAACGGTATCCGAATCCTACCATTT
95710996 GGGA
1 GGGA
95711000 TTGGGGAGGG
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
58 49 0.88
59 7 0.12
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.30
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGAACCGAACATGCAACGGTATCCGAATCCTACCATTT
Found at i:95714396 original size:34 final size:35
Alignment explanation
Indices: 95714357--95714427 Score: 108
Period size: 34 Copynumber: 2.1 Consensus size: 35
95714347 CATCTCCGGA
* *
95714357 GCTTGGCATATATGAAAGTA-ATCTTCAAAGATAT
1 GCTTGGCAAATATGAAAGGAGATCTTCAAAGATAT
*
95714391 GCTTGGCAAATATGGAAGGAGATCTTCAAAGATAT
1 GCTTGGCAAATATGAAAGGAGATCTTCAAAGATAT
95714426 GC
1 GC
95714428 GATCTTAGAC
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
34 17 0.52
35 16 0.48
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.28
Consensus pattern (35 bp):
GCTTGGCAAATATGAAAGGAGATCTTCAAAGATAT
Found at i:95714824 original size:25 final size:25
Alignment explanation
Indices: 95714748--95714824 Score: 63
Period size: 25 Copynumber: 3.1 Consensus size: 25
95714738 TCATTGTTGC
*
95714748 GAGACAGGCTGACTTAGGCATTTTT
1 GAGAAAGGCTGACTTAGGCATTTTT
* *
95714773 GAGCAAAGGAT-CCTTA---ATTGTTGT
1 GAG-AAAGGCTGACTTAGGCATT-TT-T
*
95714797 GAGATAGGCTGACTTAGGCATTTTT
1 GAGAAAGGCTGACTTAGGCATTTTT
95714822 GAG
1 GAG
95714825 TGAAAGAACG
Statistics
Matches: 39, Mismatches: 6, Indels: 14
0.66 0.10 0.24
Matches are distributed among these distances:
22 3 0.08
23 7 0.18
24 8 0.21
25 11 0.28
26 7 0.18
27 3 0.08
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (25 bp):
GAGAAAGGCTGACTTAGGCATTTTT
Found at i:95723715 original size:303 final size:304
Alignment explanation
Indices: 95723168--95723775 Score: 1184
Period size: 303 Copynumber: 2.0 Consensus size: 304
95723158 GTTGATAGGG
95723168 CAGAAATTTGAATGATGCGTCGCCGGCACAAAGGCCGTGCGATCCGTCGAGTTATCATGAATCAT
1 CAGAAATTTGAATGATGCGTCGCCGGCACAAAGGCCGTGCGATCCGTCGAGTTATCATGAATCAT
95723233 CAGAGCAACGGGCAAAGCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGG
66 CAGAGCAACGGGCAAAGCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGG
95723298 GTTTGTTGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGCAAATACCATCAAACAAA
131 GTTTGTTGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGCAAATACCATCAAACAAA
95723363 CTATAACTGATTTAATGAGCCATTCGCAGTTTCACAGTTCGAATTTGTTCATA-TTACACATGCA
196 CTATAACTGATTTAATGAGCCATTCGCAGTTTCACAGTTCGAATTTGTTCATACTTACACATGCA
*
95723427 TGGCTTAATTTTTGAGACAAGCATATGACTACTGGCAGGATCAA
261 TGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAGGATCAA
95723471 CAGAAATTTGAATGATGCGTCGCCGGCACAAAGGCCGTGCGATCCGTCGAGTTATCATGAATCAT
1 CAGAAATTTGAATGATGCGTCGCCGGCACAAAGGCCGTGCGATCCGTCGAGTTATCATGAATCAT
95723536 CAGAGCAACGGGCAAAGCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGG
66 CAGAGCAACGGGCAAAGCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGG
95723601 GTTTGTTGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGCAAATACCATCAAACAAA
131 GTTTGTTGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGCAAATACCATCAAACAAA
95723666 CTATAACTGATTTAATGAGCCATTCGCAGTTTCACAG-TCTGAATTTGTTCATACTTACACATGC
196 CTATAACTGATTTAATGAGCCATTCGCAGTTTCACAGTTC-GAATTTGTTCATACTTACACATGC
95723730 ATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAGGATCAA
260 ATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAGGATCAA
95723775 C
1 C
95723776 CAGGTAGCAT
Statistics
Matches: 302, Mismatches: 1, Indels: 3
0.99 0.00 0.01
Matches are distributed among these distances:
302 2 0.01
303 245 0.81
304 55 0.18
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (304 bp):
CAGAAATTTGAATGATGCGTCGCCGGCACAAAGGCCGTGCGATCCGTCGAGTTATCATGAATCAT
CAGAGCAACGGGCAAAGCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGG
GTTTGTTGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGCAAATACCATCAAACAAA
CTATAACTGATTTAATGAGCCATTCGCAGTTTCACAGTTCGAATTTGTTCATACTTACACATGCA
TGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAGGATCAA
Found at i:95725045 original size:42 final size:42
Alignment explanation
Indices: 95724917--95725237 Score: 333
Period size: 42 Copynumber: 7.5 Consensus size: 42
95724907 CTTTCTTTAG
* * ** *
95724917 CCCGCACATCCGAGCCACCAGGGTGCCCCTGCTGCTCGAGGCA
1 CCCGCACATCCAAG-CACCAAGGTGCCAATGCTGCTCGAGGCT
* * * *
95724960 CCCGCACATCCAA-CGTCCTAGGTTGCCGATGGTG-TCCGAGGCT
1 CCCGCACATCCAAGC-ACCAAGG-TGCCAATGCTGCT-CGAGGCT
** * *
95725003 CCCTTACATCCAAGCACCAAGGTGCCAACGCTTCTCGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCT
95725045 CCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCT
95725087 CCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCT
* * * * *
95725129 CCCGCACATCCAAGGAACCTAGGTGCCGATGGTGCCCGAGGCT
1 CCCGCACATCCAA-GCACCAAGGTGCCAATGCTGCTCGAGGCT
* ** * * * *
95725172 CTCGCACGA-CCAAGGGCCGAGGTTGCCGATGGTGTTCGAGGCT
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCTCGAGGCT
95725215 CCCGCACATCCAAGCACCAAGGT
1 CCCGCACATCCAAGCACCAAGGT
95725238 ACCGATGGTG
Statistics
Matches: 234, Mismatches: 35, Indels: 19
0.81 0.12 0.07
Matches are distributed among these distances:
41 1 0.00
42 120 0.51
43 111 0.47
44 2 0.01
ACGTcount: A:0.21, C:0.37, G:0.26, T:0.16
Consensus pattern (42 bp):
CCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCT
Found at i:95725243 original size:85 final size:84
Alignment explanation
Indices: 95724953--95725807 Score: 780
Period size: 85 Copynumber: 10.1 Consensus size: 84
95724943 CCCTGCTGCT
* * * **
95724953 CGAGGCACCCGCACATCCAA-CGTCCTAGGTTGCCGATGGTGTCCGAGGCTCCCTTAC-ATCCAA
1 CGAGGCTCCCGCACATCCAAGC-ACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAA
** * * * * * *
95725016 GCACCAAGGTGCCAACGCTTCT
63 GGGCCTAGGTGCCGATGGTGCC
* * * * *
95725038 CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCAAGC
1 CGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG
* * * * *
95725102 ACCAAGGTGCCAATGCTGCT
65 GCCTAGGTGCCGATGGTGCC
* *
95725122 CGAGGCTCCCGCACATCCAAGGAACCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGG
1 CGAGGCTCCCGCACATCCAA-GCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* **
95725187 GCCGAGGTTGCCGATGGTGTT
65 GCCTAGG-TGCCGATGGTGCC
* * * * *
95725208 CGAGGCTCCCGCACATCCAAGCACCAAGGTACCGATGGTGCCCGAGGTTCTCGCACGATCAA-GG
1 CGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
95725272 CCTAGGTTGCCGATGGTGCC
66 CCTAGG-TGCCGATGGTGCC
* ** * * *
95725292 CGAGGTTCTTGCACGATCAAAG--CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCATGACCAGG
1 CGAGGCTCCCGCAC-ATCCAAGCACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
*
95725355 GGCCTAGGTTACCGATGGTGCC
64 GGCCTAGG-TGCCGATGGTGCC
** * * *
95725377 CGAGGCTCCCGCACATCCAAGGGCCTAGGTGTCGATGGTGGCCGAGGCTCCCGCAGGACCAAGGG
1 CGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
95725442 CCTAGGTGCCGATGGT-CC
66 CCTAGGTGCCGATGGTGCC
* ** * * **
95725460 CGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAAGCTCCTGCACGACCGGG
1 CGAGGCTCCCGCAC-ATCCAAGCACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
95725524 GGCCTAGGTTGCCGATGGTGCC
64 GGCCTAGG-TGCCGATGGTGCC
* * * *
95725546 TGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCTGAGGCTCCCGTACGACCAAGGG
1 CGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
95725611 CCTAGGTGCCGATAGTGCC
66 CCTAGGTGCCGATGGTGCC
* * ** * * * * ** *
95725630 CGAGCCTCTCGCACGA-CCAAGGGCCTAGGTTACCGATCGTGGCCGAAGCTCCTACATC-ACCAG
1 CGAGGCTCCCGCAC-ATCCAAGCACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCA-CGACCAA
*
95725693 GGGCCTAGGTGCCGATGGTGGC
63 GGGCCTAGGTGCCGATGGTGCC
* * * *
95725715 CGAGGCTCCCGCACGA-CCAAGCGCCTAGGTTGCCGATGGTGGCCGAGGCTCTCGCACGACCAGG
1 CGAGGCTCCCGCAC-ATCCAAGCACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
*
95725779 GGCCTAGGAT-CTGATGGTGCC
64 GGCCTAGG-TGCCGATGGTGCC
*
95725800 TGAGGCTC
1 CGAGGCTC
95725808 TCGTATGACC
Statistics
Matches: 650, Mismatches: 101, Indels: 38
0.82 0.13 0.05
Matches are distributed among these distances:
83 33 0.05
84 209 0.32
85 344 0.53
86 64 0.10
ACGTcount: A:0.19, C:0.33, G:0.31, T:0.16
Consensus pattern (84 bp):
CGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
CCTAGGTGCCGATGGTGCC
Found at i:95725263 original size:42 final size:42
Alignment explanation
Indices: 95724953--95725829 Score: 717
Period size: 42 Copynumber: 20.7 Consensus size: 42
95724943 CCCTGCTGCT
* * * *
95724953 CGAGGCACCCGCACATCCAACGTCCTAGGTTGCCGATGGTGTC
1 CGAGGCTCCCGCACATCCAAGGGCCTAGG-TGCCGATGGTGCC
** ** * * * * * *
95724996 CGAGGCTCCCTTACATCCAAGCACCAAGGTGCCAACGCTTCT
1 CGAGGCTCCCGCACATCCAAGGGCCTAGGTGCCGATGGTGCC
** * * * *
95725038 CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGCTGCT
1 CGAGGCTCCCGCACATCCAAGGGCCTAGGTGCCGATGGTGCC
** * * * *
95725080 CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGCTGCT
1 CGAGGCTCCCGCACATCCAAGGGCCTAGGTGCCGATGGTGCC
*
95725122 CGAGGCTCCCGCACATCCAAGGAACCTAGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACATCCAAGG-GCCTAGGTGCCGATGGTGCC
* * **
95725165 CGAGGCTCTCGCACGA-CCAAGGGCCGAGGTTGCCGATGGTGTT
1 CGAGGCTCCCGCAC-ATCCAAGGGCCTAGG-TGCCGATGGTGCC
** * *
95725208 CGAGGCTCCCGCACATCCAAGCACCAAGGTACCGATGGTGCC
1 CGAGGCTCCCGCACATCCAAGGGCCTAGGTGCCGATGGTGCC
* *
95725250 CGAGGTTCTCGCACGAT-CAA-GGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCAC-ATCCAAGGGCCTAGG-TGCCGATGGTGCC
* ** *
95725292 CGAGGTTCTTGCACGAT-CAA-AGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCAC-ATCCAAGGGCCTAGG-TGCCGATGGTGCC
* * *
95725334 CGAGGCTCCCGCATGA-CCAGGGGCCTAGGTTACCGATGGTGCC
1 CGAGGCTCCCGCA-CATCCAAGGGCCTAGG-TGCCGATGGTGCC
* *
95725377 CGAGGCTCCCGCACATCCAAGGGCCTAGGTGTCGATGGTGGC
1 CGAGGCTCCCGCACATCCAAGGGCCTAGGTGCCGATGGTGCC
*
95725419 CGAGGCTCCCGCAGGA-CCAAGGGCCTAGGTGCCGATGGT-CC
1 CGAGGCTCCCGCA-CATCCAAGGGCCTAGGTGCCGATGGTGCC
*
95725460 CGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCAC-ATCCAAGGGCCTAGG-TGCCGATGGTGCC
* * **
95725503 CGAAGCTCCTGCACGA-CCGGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCAC-ATCCAAGGGCCTAGG-TGCCGATGGTGCC
* ** *
95725546 TGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACATCCAAGGGCCTAGGTGCCGATGGTGCC
* * *
95725588 TGAGGCTCCCGTACGA-CCAAGGGCCTAGGTGCCGATAGTGCC
1 CGAGGCTCCCGCAC-ATCCAAGGGCCTAGGTGCCGATGGTGCC
* * * * *
95725630 CGAGCCTCTCGCACGA-CCAAGGGCCTAGGTTACCGATCGTGGC
1 CGAGGCTCCCGCAC-ATCCAAGGGCCTAGG-TGCCGATGGTGCC
* ** * *
95725673 CGAAGCTCCTACATCA-CCAGGGGCCTAGGTGCCGATGGTGGC
1 CGAGGCTCCCGCA-CATCCAAGGGCCTAGGTGCCGATGGTGCC
* *
95725715 CGAGGCTCCCGCACGA-CCAAGCGCCTAGGTTGCCGATGGTGGC
1 CGAGGCTCCCGCAC-ATCCAAGGGCCTAGG-TGCCGATGGTGCC
* * *
95725758 CGAGGCTCTCGCACGA-CCAGGGGCCTAGGAT-CTGATGGTGCC
1 CGAGGCTCCCGCAC-ATCCAAGGGCCTAGG-TGCCGATGGTGCC
* * * *
95725800 TGAGGCTCTCGTATGA-CCAAGGGCCTAGGT
1 CGAGGCTCCCGCA-CATCCAAGGGCCTAGGT
95725830 CTAACTACGA
Statistics
Matches: 706, Mismatches: 107, Indels: 44
0.82 0.12 0.05
Matches are distributed among these distances:
41 34 0.05
42 400 0.57
43 270 0.38
44 2 0.00
ACGTcount: A:0.19, C:0.33, G:0.31, T:0.17
Consensus pattern (42 bp):
CGAGGCTCCCGCACATCCAAGGGCCTAGGTGCCGATGGTGCC
Found at i:95725308 original size:23 final size:23
Alignment explanation
Indices: 95725240--95725308 Score: 56
Period size: 23 Copynumber: 3.2 Consensus size: 23
95725230 ACCAAGGTAC
*
95725240 CGATGGTGCCCGAGGTTCTCGCA
1 CGATGGTGCCCGAGGTTCTTGCA
*** * *
95725263 CGATCAAGGCCTAGG---TTGC-
1 CGATGGTGCCCGAGGTTCTTGCA
95725282 CGATGGTGCCCGAGGTTCTTGCA
1 CGATGGTGCCCGAGGTTCTTGCA
95725305 CGAT
1 CGAT
95725309 CAAAGCCTAG
Statistics
Matches: 31, Mismatches: 11, Indels: 8
0.62 0.22 0.16
Matches are distributed among these distances:
19 10 0.32
20 3 0.10
22 4 0.13
23 14 0.45
ACGTcount: A:0.16, C:0.28, G:0.33, T:0.23
Consensus pattern (23 bp):
CGATGGTGCCCGAGGTTCTTGCA
Found at i:95725383 original size:169 final size:169
Alignment explanation
Indices: 95725038--95725829 Score: 900
Period size: 169 Copynumber: 4.7 Consensus size: 169
95725028 CAACGCTTCT
* * *
95725038 CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCAAGC
1 CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-
* * * * * * *
95725102 ACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCAAGGAACCTAGG-TGCCGATGGTGCC
64 GCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGA-CCAA-GAGCCTAGGTTGCCGATGGTGCC
* * * * **
95725165 CGAGGCTCTCGCACGACCAAGGGCCGAGGTTGCCGATGGTGTT
127 CGAAGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCC
* * * *
95725208 CGAGGCTCCCGCACATCCAAGCACCAAGGTACCGATGGTGCCCGAGGTTCTCGCACGATCAAGGC
1 CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGC
* * *
95725273 CTAGGTTGCCGATGGTGCCCGAGGTTCTTGCACGATCAA-AGCCTAGGTTGCCGATGGTGCCCGA
66 CTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGAGCCTAGGTTGCCGATGGTGCCCGA
* * *
95725337 GGCTCCCGCATGACCAGGGGCCTAGGTTACCGATGGTGCC
130 AGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCC
** * * * *
95725377 CGAGGCTCCCGCACATCCAAGGGCCTAGGTGTCGATGGTGGCCGAGGCTCCCGCAGGACCAAGGG
1 CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA-GG
*
95725442 CCTAGGTGCCGATGGT-CCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
65 CCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGAGCCTAGGTTGCCGATGGTGCCCGA
* *
95725506 AGCTCCTGCACGACCGGGGGCCTAGGTTGCCGATGGTGCC
130 AGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCC
* * *
95725546 TGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCTGAGGCTCCCGTACGACCAAGGG
1 CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA-GG
* * * * * *
95725611 CCTAGGTGCCGATAGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTACCGATCGTGGCCGA
65 CCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGAGCCTAGGTTGCCGATGGTGCCCGA
** *
95725676 AGCTCCTACATC-ACCAGGGGCCTAGG-TGCCGATGGTGGC
130 AGCTCCCGCA-CGACCAGGGGCCTAGGTTGCCGATGGTGCC
* * * * *
95725715 CGAGGCTCCCGCACGA-CCAAGCGCCTAGGTTGCCGATGGTGGCCGAGGCTCTCGCACGACCAGG
1 CGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCA-A
* * * * *
95725779 GGCCTAGGAT-CTGATGGTGCCTGAGGCTCTCGTATGACCAAGGGCCTAGGT
63 GGCCTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGAGCCTAGGT
95725830 CTAACTACGA
Statistics
Matches: 536, Mismatches: 74, Indels: 24
0.85 0.12 0.04
Matches are distributed among these distances:
168 26 0.05
169 282 0.53
170 224 0.42
171 4 0.01
ACGTcount: A:0.19, C:0.33, G:0.32, T:0.16
Consensus pattern (169 bp):
CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGC
CTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGAGCCTAGGTTGCCGATGGTGCCCGAA
GCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCC
Found at i:95726454 original size:247 final size:247
Alignment explanation
Indices: 95726018--95726512 Score: 963
Period size: 247 Copynumber: 2.0 Consensus size: 247
95726008 CGTGTCAGGA
*
95726018 TTGGGTAATTTGCACGCCTGCTGCCTTCTTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCG
1 TTGGGTAATTTGCACGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCG
95726083 GAATCGAACCCTAATTCTCCGTCACCCGTCACCCGTCACCACCATAGTAGGCCACTATACTACCA
66 GAATCGAACCCTAATTCTCCGTCACCCGTCACCCGTCACCACCATAGTAGGCCACTATACTACCA
95726148 TCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCACCGGCACAAAGGCCGTGTGATCCGTCG
131 TCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCACCGGCACAAAGGCCGTGTGATCCGTCG
*
95726213 AGTTATCATGAATCATCAGAGCAACGGGCAAAGCCCGCGTCGACCTTTTATC
196 AGTTATCATGAATCATCAGAGCAACGGGCAAAGCCCGCGTCGACATTTTATC
*
95726265 TTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCG
1 TTGGGTAATTTGCACGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCG
95726330 GAATCGAACCCTAATTCTCCGTCACCCGTCACCCGTCACCACCATAGTAGGCCACTATACTACCA
66 GAATCGAACCCTAATTCTCCGTCACCCGTCACCCGTCACCACCATAGTAGGCCACTATACTACCA
95726395 TCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCACCGGCACAAAGGCCGTGTGATCCGTCG
131 TCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCACCGGCACAAAGGCCGTGTGATCCGTCG
95726460 AGTTATCATGAATCATCAGAGCAACGGGCAAAGCCCGCGTCGACATTTTATC
196 AGTTATCATGAATCATCAGAGCAACGGGCAAAGCCCGCGTCGACATTTTATC
95726512 T
1 T
95726513 AATAAATGCA
Statistics
Matches: 245, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
247 245 1.00
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.25
Consensus pattern (247 bp):
TTGGGTAATTTGCACGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCG
GAATCGAACCCTAATTCTCCGTCACCCGTCACCCGTCACCACCATAGTAGGCCACTATACTACCA
TCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCACCGGCACAAAGGCCGTGTGATCCGTCG
AGTTATCATGAATCATCAGAGCAACGGGCAAAGCCCGCGTCGACATTTTATC
Found at i:95728313 original size:25 final size:25
Alignment explanation
Indices: 95728285--95728363 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 25
95728275 GGGAGGTGGA
95728285 TAATAGGATTTACTAGGTACTTGGG
1 TAATAGGATTTACTAGGTACTTGGG
* * * * ** *
95728310 TAATTGTG-TTGTCCT-TGAAGGTGGA
1 TAATAG-GATT-TACTAGGTACTTGGG
95728335 TAATAGGATTTACTAGGTACTTGGG
1 TAATAGGATTTACTAGGTACTTGGG
95728360 TAAT
1 TAAT
95728364 TGTGTTGTCC
Statistics
Matches: 36, Mismatches: 14, Indels: 8
0.62 0.24 0.14
Matches are distributed among these distances:
24 4 0.11
25 28 0.78
26 4 0.11
ACGTcount: A:0.27, C:0.08, G:0.28, T:0.38
Consensus pattern (25 bp):
TAATAGGATTTACTAGGTACTTGGG
Found at i:95728353 original size:50 final size:50
Alignment explanation
Indices: 95728278--95728377 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
95728268 TCATAATGGG
95728278 AGGTGGATAATAGGATTTACTAGGTACTTGGGTAATTGTGTTGTCCTTGA
1 AGGTGGATAATAGGATTTACTAGGTACTTGGGTAATTGTGTTGTCCTTGA
95728328 AGGTGGATAATAGGATTTACTAGGTACTTGGGTAATTGTGTTGTCCTTGA
1 AGGTGGATAATAGGATTTACTAGGTACTTGGGTAATTGTGTTGTCCTTGA
95728378 TTCAGAGCTT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.24, C:0.08, G:0.30, T:0.38
Consensus pattern (50 bp):
AGGTGGATAATAGGATTTACTAGGTACTTGGGTAATTGTGTTGTCCTTGA
Found at i:95729324 original size:42 final size:42
Alignment explanation
Indices: 95729211--95729475 Score: 250
Period size: 43 Copynumber: 6.3 Consensus size: 42
95729201 GTGCGGGAGC
** * *
95729211 CACCAA-GTGCCCCTGCTGCTCGAGGCACCCACACATCCAA-
1 CACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCACATCCAAG
* * * *
95729251 CGTCCTAGGTTGCCGATGGTG-TCCGAGGCTCCCGCACATCCAAG
1 C-ACCAAGG-TGCCAATGCTGCT-CGAGGCTCCCGCACATCCAAG
*
95729295 CACCAAGGTGCCAATGCTTCTCGAGGCTCCCGCACATCCAAG
1 CACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCACATCCAAG
* *
95729337 TACCAAGGTGCCAATACTGCTCGAGGCTCCCGCACATCCAAGG
1 CACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCACATCCAA-G
* * * *
95729380 CACCAAGGTGCCGAGGGTGCCCGAGGCTCCCGCACGA-CCAAG
1 CACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCAAG
** * * * * *
95729422 GGCCGAGGTTACCGATGGTGTTCGAGGCTCCCGCACATCCAAG
1 CACCAAGG-TGCCAATGCTGCTCGAGGCTCCCGCACATCCAAG
95729465 CACCAAGGTGC
1 CACCAAGGTGC
95729476 TGATGGTGCC
Statistics
Matches: 183, Mismatches: 32, Indels: 18
0.79 0.14 0.08
Matches are distributed among these distances:
40 1 0.01
41 3 0.02
42 78 0.43
43 99 0.54
44 2 0.01
ACGTcount: A:0.22, C:0.37, G:0.26, T:0.15
Consensus pattern (42 bp):
CACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCACATCCAAG
Found at i:95730599 original size:43 final size:43
Alignment explanation
Indices: 95729254--95730586 Score: 1548
Period size: 43 Copynumber: 31.4 Consensus size: 43
95729244 CATCCAACGT
* **
95729254 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * * * **
95729297 CCAAGG-TGCCAATGCTTCTCGAGGCTCCCGCAC-ATCCAAGTA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * ** * *
95729339 CCAAGG-TGCCAATACTGCTCGAGGCTCCCGCAC-ATCCAAGGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG-G
* *
95729382 CCAAGG-TGCCGAGGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * ** **
95729424 CCGAGGTTACCGATGGTGTTCGAGGCTCCCGCAC-ATCCAAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * * *
95729467 CCAAGG-TGCTGATGGTGCCCGAGGTTCTCGCAGGACCAA-GG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * * *
95729508 CCTAGGTTACCGATGGTGCCCGAAGTTCTCGCACGATCAA-GG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
95729550 CCTAGGTTGCCGATGGTACCCGAGGCTCCCGTACGATCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
95729593 ACTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
95729636 CCTAGG-TGCCGATGGT-CGCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGC-CCGAGGCTCCCGCACGACCAAGGG
** *
95729678 CCTAGG-TGCCGATGGT-CCCGAGGCTCTTGCACGACCAAGGT
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
95729719 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCATGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
95729762 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCATGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
**
95729805 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * *
95729848 CCAAGG-AGCAGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
95729890 CCTAGGTT-ACGATGGTGCCCAAGGCTCTCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * ** * *
95729932 CCTAGGTTGCCGATGGTGGCCGAAGCTCCTACATGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
95729975 CCTAGG-TGCCGATGGTGGCTGAGGCTCCCGCACGACCAAGGA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
95730017 CCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
95730060 CCTAGGTT-CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
95730102 CCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
95730145 CCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
95730188 CCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
95730231 CCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
95730274 CCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
95730317 CCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
95730360 CCTAGGTT-CCGATGGTGCCCGAGGCTCTCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* ** * *
95730402 CCTAGGTTGCTGATGGT-ATCGAGGCTCCCGCGCGA-CTAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * **
95730443 TCCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCA-TATCCAAGCA
1 -CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* *
95730487 CCAAGG-TGCCGGTGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
95730529 GCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACAAACGT
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
95730571 CCTAGGTTGCCGATGG
1 CCTAGGTTGCCGATGG
95730587 CATCCAAGGC
Statistics
Matches: 1134, Mismatches: 131, Indels: 50
0.86 0.10 0.04
Matches are distributed among these distances:
41 38 0.03
42 509 0.45
43 583 0.51
44 4 0.00
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.16
Consensus pattern (43 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
Found at i:95730611 original size:85 final size:86
Alignment explanation
Indices: 95729254--95730586 Score: 1548
Period size: 85 Copynumber: 15.7 Consensus size: 86
95729244 CATCCAACGT
* ** * * * * *
95729254 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTTCTC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
**
95729317 GAGGCTCCCGCAC-ATCCAAGTA
65 GAGGCTCCCGCACGA-CCAAGGG
* * ** * * * *
95729339 CCAAGG-TGCCAATACTGCTCGAGGCTCCCGCAC-ATCCAAGGCACCAAGG-TGCCGAGGGTGCC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGGTGCC
95729401 CGAGGCTCCCGCACGACCAAGGG
64 CGAGGCTCCCGCACGACCAAGGG
* * ** ** * *
95729424 CCGAGGTTACCGATGGTGTTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCTGATGGTGCCC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
* * *
95729487 GAGGTTCTCGCAGGACCAA-GG
65 GAGGCTCCCGCACGACCAAGGG
* * * * * *
95729508 CCTAGGTTACCGATGGTGCCCGAAGTTCTCGCACGATCAA-GGCCTAGGTTGCCGATGGTACCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * *
95729572 AGGCTCCCGTACGATCAGGGG
66 AGGCTCCCGCACGACCAAGGG
*
95729593 ACTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGGCCTAGG-TGCCGATGGT-CGC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGC-C
95729655 CGAGGCTCCCGCACGACCAAGGG
64 CGAGGCTCCCGCACGACCAAGGG
** *
95729678 CCTAGG-TGCCGATGGT-CCCGAGGCTCTTGCACGACCAAGGTCCTAGGTTGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* *
95729741 AGGCTCCCGCATGACCAGGGG
66 AGGCTCCCGCACGACCAAGGG
* *
95729762 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCATGACCAGGGGCCTAGGTTGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
**
95729827 AGGCTCCCGCAC-ATCCAAGCA
66 AGGCTCCCGCACGA-CCAAGGG
* * * * *
95729848 CCAAGG-AGCAGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT-ACGATGGTGCCCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
*
95729911 AGGCTCTCGCACGACCAAGGG
66 AGGCTCCCGCACGACCAAGGG
* * ** * * * *
95729932 CCTAGGTTGCCGATGGTGGCCGAAGCTCCTACATGACCAGGGGCCTAGG-TGCCGATGGTGGCTG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
*
95729996 AGGCTCCCGCACGACCAAGGA
66 AGGCTCCCGCACGACCAAGGG
* *
95730017 CCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACGACCAGGGGCCTAGGTT-CCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
*
95730081 AGGCTCCCGCACGACCAAGGC
66 AGGCTCCCGCACGACCAAGGG
* * *
95730102 CCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGCCCTAGGTTGCCGATGGTGGCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
*
95730167 AGGCTCCCGCACGACCAAGGC
66 AGGCTCCCGCACGACCAAGGG
* * *
95730188 CCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGCCCTAGGTTGCCGATGGTGGCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
*
95730253 AGGCTCCCGCACGACCAAGGC
66 AGGCTCCCGCACGACCAAGGG
* * *
95730274 CCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGCCCTAGGTTGCCGATGGTGGCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
*
95730339 AGGCTCCCGCACGACCAGGGG
66 AGGCTCCCGCACGACCAAGGG
* * **
95730360 CCTAGGTT-CCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCTGATGGT-ATCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* *
95730423 AGGCTCCCGCGCGA-CTAGGG
66 AGGCTCCCGCACGACCAAGGG
* * ** * *
95730443 TCCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCA-TATCCAAGCACCAAGG-TGCCGGTGGTGCC
1 -CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
95730506 CGAGGCTCCCGCACGACCAAGGG
64 CGAGGCTCCCGCACGACCAAGGG
* * * *
95730529 GCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACAAACGTCCTAGGTTGCCGATGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
95730587 CATCCAAGGC
Statistics
Matches: 1088, Mismatches: 133, Indels: 54
0.85 0.10 0.04
Matches are distributed among these distances:
83 35 0.03
84 236 0.22
85 500 0.46
86 317 0.29
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.16
Consensus pattern (86 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
AGGCTCCCGCACGACCAAGGG
Found at i:95731282 original size:58 final size:58
Alignment explanation
Indices: 95731191--95731300 Score: 175
Period size: 58 Copynumber: 1.9 Consensus size: 58
95731181 GACAGGGACA
* * *
95731191 ATTCATTCATTGTTGGGTACCGGACATGCAACGGTATTCGAATCCTACCTTTGGGATG
1 ATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTGGGATG
* *
95731249 ATTCATTCATTATTGGGTACCGAACATGTAACGGTATCCGAATTCTACCTTT
1 ATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTT
95731301 TGAGATTGGG
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
58 47 1.00
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.35
Consensus pattern (58 bp):
ATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTGGGATG
Found at i:95731976 original size:5 final size:5
Alignment explanation
Indices: 95731968--95731998 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
95731958 TACAAGAAGT
*
95731968 ATGGC ATGGC ATGGC ATGGC ATGGC ACGGC A
1 ATGGC ATGGC ATGGC ATGGC ATGGC ATGGC A
95731999 GAAAATTGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.23, C:0.23, G:0.39, T:0.16
Consensus pattern (5 bp):
ATGGC
Found at i:95732069 original size:182 final size:178
Alignment explanation
Indices: 95731751--95732108 Score: 470
Period size: 182 Copynumber: 2.0 Consensus size: 178
95731741 TTTTAATTGA
* *
95731751 AAATTTTTTCTGTCGGCCCAAAATAAATACAAGAAGCTGAATGAAATATGGCATGATGGCACGGT
1 AAATTTTTTCTGTCGGCCCAAAACAAATACAAGAAGCT-AATGAAATATGGCATGATGGCACGGC
* * * * **
95731816 AGATAATTGAACAAGTGCCCAGGCCGCCAACAGTTGGGAGCTCGCATTCGCACCACCACGGCCCT
65 AGAAAATTGAACAAGGGCCCAGGCCGCCAACACTTGGGAGCTCACACCCGCACCACCACGGCCCT
*
95731881 CGTTGTGCGATGTTTCCCGAGGGAGCGGCACGACCAAGTGTTTAACTTAG
130 CGTTGTGCCATGTTTCCCG-GGGAGCGGCACGACCAAGTGTTTAACTTAG
* **
95731931 AAATTTTTTCTGTTGGCCCAAAACAAATACAAGAAG-T-ATGGCATGGCATGGCATGGCATGGCA
1 AAATTTTTTCTGTCGGCCCAAAACAAATACAAGAAGCTAATGAAAT---ATGGCAT-G-ATGGCA
* * *
95731994 CGGCAGAAAATTGAACAAGGGCCCGGGCCGTCAACACTTGGGAGCTCACACCCGCACGACCACGG
61 CGGCAGAAAATTGAACAAGGGCCCAGGCCGCCAACACTTGGGAGCTCACACCCGCACCACCACGG
* *
95732059 ACCC-CGTTGTGCCATGTTTCTCGGGGGGCGGCACGACCAAGTGTTTAACT
126 -CCCTCGTTGTGCCATGTTTCCCGGGGAGCGGCACGACCAAGTGTTTAACT
95732109 AACTCCTTAC
Statistics
Matches: 155, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
177 5 0.03
179 1 0.01
180 41 0.26
181 27 0.17
182 78 0.50
183 3 0.02
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.21
Consensus pattern (178 bp):
AAATTTTTTCTGTCGGCCCAAAACAAATACAAGAAGCTAATGAAATATGGCATGATGGCACGGCA
GAAAATTGAACAAGGGCCCAGGCCGCCAACACTTGGGAGCTCACACCCGCACCACCACGGCCCTC
GTTGTGCCATGTTTCCCGGGGAGCGGCACGACCAAGTGTTTAACTTAG
Found at i:95739250 original size:42 final size:44
Alignment explanation
Indices: 95739153--95741795 Score: 2501
Period size: 42 Copynumber: 62.5 Consensus size: 44
95739143 CCTTGCAGCT
* * * * *
95739153 CGAGGCACCCGCAC-ATCCAACGTCCTAGGTTGTCGATGGTGTC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
** * * * *
95739196 CGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCT
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
95739238 CGAGGCTCCCGCAC-ATCCAAGGTACCAAGG-TGCCGTTGGTGCC
1 CGAGGCTCCCGCACGATCCAAGG-GCCTAGGTTGCCGATGGTGCC
* **
95739281 CGAGGCTCCCGCACGA-CCAAGGGCCGAGGTTGCCGATGGTGTT
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* ** *
95739324 CGAGGGTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
*
95739366 CGA-GCTTCTCGCACGAT-CAA-GGCCTAGGTTGCCGATGGTGCC
1 CGAGGC-TCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* *
95739408 AGAGGCTCCCGCACGA-CCAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
*
95739451 CGAGGCTCCTGCAC-ATCCAAGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
*
95739494 CGAGGCTCCTGCAC-ATCCAAGGGCCTAGG-TGCCGATGGT-CC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
**
95739535 CGAGGCTCTTGCACGAT-CAAGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* * * *
95739578 CGAGGTTCCCACACGA-CCACGGGCCTAGGTTGTCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
** * * * * *
95739621 CGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTACT
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
95739663 CGAGGCTCCCGCAC-ATCCAAGGCACCAAGG-TGCCGCTGGTGCC
1 CGAGGCTCCCGCACGATCCAAGG-GCCTAGGTTGCCGATGGTGCC
* * * **
95739706 CGAGCCTCCCGCACGAT-CAAGGACCGAGGTTGCCGATGGTGTT
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* * ** *
95739749 TGAGGCCCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
95739791 CGAGGTTCTCACACGAT-CAA-GGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* *
95739833 CGAGGTTCTCGCACGAT-CAAGGG-CTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* *
95739875 AGAGGCTCCCGCACGA-CCAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
95739918 CGAGGCTCCTGCAC-ATCTAAGGGCCTAGG-TGCCGATGGTGGC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
**
95739960 CGAGGCTCCATCACGA-CCAAGGGCCTAGG-TGCCGATGGT-CC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* * * *
95740001 CGTGGCTCTCACACGA-CCAAGGGCCTAGGTTGTCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* * * *
95740044 CGAAGTTCCCGCACGA-CCAGGGGCCTAGGTTGCCGTTGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
** * * *
95740087 CGAGGCTCCCGCAC-ATCCAAGCACCAATG-TGCCGATGGTACC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
95740129 CGAGGCTCCCGCACGA-CCAAGGGCCTAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
95740171 CGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGTCGATGGTGGC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* * ** * * *
95740214 CAAAGCTCCTACATGA-CCAGGGGCCTAGG-TGCCGATGGTGGC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
95740256 CGAGGCTCCCGCACGA-CCAAGCGTCTAGGTTGCCGATGGTGGC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
95740299 CGAGGCTCCCGCACGA-CCAGGGGCCTAGGTT-CCAATAGTAGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGT-GCC
** * * * *
95740342 CGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCT
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* * * *
95740384 CGAGGCTCCCGCAC-ATCCAAGGCACCAAGG-TGCCGATGGTACA
1 CGAGGCTCCCGCACGATCCAAGG-GCCTAGGTTGCCGATGGTGCC
* * **
95740427 CGATGCTCCCGCACGA-CCAAGGGCCGAGGTTGCCGATGGTGTT
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* *
95740470 CAAGGCTCCCGCAC-ATCCAA--G-C-A-----CC-AAGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* * * **
95740503 GCGAGTCTCTCGCAC-ACCCAAGGGCCTAGGTTGCCGATGGTGGT
1 -CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* ** * *
95740547 CTAGGCTCCCTAACGA-CTAGGGGCCTAGGTT-CCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* **
95740589 CGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGT-AT
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* ** * *
95740631 TGAGGCTCCTACGCGA-CCAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* ** * *
95740674 CGAGGCTCTCGCAC-ATCCAAGCACCAAGG-TGCCGGTGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
** * * * *
95740716 CGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCT
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* *
95740758 CGAGGCTCCCGCAC-ATCCAAGGCACCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGG-GCCTAGGTTGCCGATGGTGCC
* * * *
95740801 CGAGGTTCTCGCACGAT-CGA-GGCCTAGGTTTCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* ** * *
95740843 CGAGGCTCTCGCAC-ATCCAAGCACCAAGG-TGCCGGTGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
** * * * *
95740885 CGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCT
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* *
95740927 CGAGGCTCCCGCAC-ATCCAAGGCACCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGG-GCCTAGGTTGCCGATGGTGCC
* **
95740970 CGAGGCTCCCGCACGA-CCAAGGGCCGAGGTTGCCGATGGTGTT
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
*** *
95741013 CGAGGCTCCCGCAC-ATCCAACCACCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
95741055 CGAGGTTCTCGCACGAT-CAA-GGCCTAGGTTTCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
95741097 CGAGGTTCTCGCACGAT-CAA-GGCCTAGGATGCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
*
95741139 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGGTGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* *
95741182 CGAGGCTCCCGTAC-ATCCAAGGGCCTAGG-TGCCGATGGTGGC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
*
95741224 CGAGGCTCCCGTACGA-CCAAGGGCCTAGG-TGCCGATGGT-CC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * *
95741265 CGTGGCTCTCACACGA-CCAAGGGCCTAGGTTGTCGATGGTG-T
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* *
95741307 CGAGGCTCCCGCGCGA-CCAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
95741350 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
95741393 CGAGGCTCCCGTACGA-CCAGGGGCCTAGGTTGCCGATGCTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* * ** *
95741436 TGAGGCTCTCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
*
95741478 CGAGGCTCCCGCACGA-CCAAGGGCCTAGG-TGCCGATGGTACC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * *
95741520 CGAGTCTCTCGCATGA-CCAAGGGGCTAGGTTGCCGATGGTGGC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* ** * * *
95741563 CGAAGCTCCTACATGA-CCAGGGGCCTAGG-TGCCGATGGTGAC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* *
95741605 CGAGGCTTCCGCACGA-CCAAGCGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* *
95741648 CAAGGCTCTCGCACGA-CCAAGGGCCTAGGTT-CCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* * * **
95741690 CGAGGCTCTCGCATGA-CCAAGGGCCTAGGTTGTCGATGGT-AT
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
* *
95741732 CGAGGCTCCCGCGCGA-CCAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
95741775 CGAGGCTCCCGCAC-ATCCAAG
1 CGAGGCTCCCGCACGATCCAAG
95741796 CGGTGTTGTT
Statistics
Matches: 2179, Mismatches: 341, Indels: 160
0.81 0.13 0.06
Matches are distributed among these distances:
33 5 0.00
34 18 0.01
36 1 0.00
37 1 0.00
38 1 0.00
39 1 0.00
40 1 0.00
41 103 0.05
42 1051 0.48
43 984 0.45
44 13 0.01
ACGTcount: A:0.18, C:0.33, G:0.32, T:0.17
Consensus pattern (44 bp):
CGAGGCTCCCGCACGATCCAAGGGCCTAGGTTGCCGATGGTGCC
Found at i:95739284 original size:85 final size:86
Alignment explanation
Indices: 95739153--95741795 Score: 2430
Period size: 85 Copynumber: 31.2 Consensus size: 86
95739143 CCTTGCAGCT
* * * * *
95739153 CGAGGCACCCGCACATCCAACGTCCTAGGTTGTCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAG
1 CGAGGCTCCCGCACATCCAAGGACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAG
** * * * *
95739217 CACCAAGG-TGCCAATGCTGCT
65 GGCCTAGGTTGCCGATGGTGCC
* *
95739238 CGAGGCTCCCGCACATCCAAGGTACCAAGGTGCCGTTGGTGCCCGAGGCTCCCGCACGA-CCAAG
1 CGAGGCTCCCGCACATCCAAGG-ACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAG
* **
95739302 GGCCGAGGTTGCCGATGGTGTT
65 GGCCTAGGTTGCCGATGGTGCC
* * * *
95739324 CGAGGGTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGA-GCTTCTCGCACGAT-CAA-
1 CGAGGCTCCCGCACATCCAAGGACCTAGGTGCCGATGGTGCCCGAGGC-TCCCGCACGATCCAAG
95739386 GGCCTAGGTTGCCGATGGTGCC
65 GGCCTAGGTTGCCGATGGTGCC
* * * *
95739408 AGAGGCTCCCGCACGA-CCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCTGCAC-ATCCAA
1 CGAGGCTCCCGCAC-ATCCAAGGACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGATCCAA
95739471 GGGCCTAGGTTGCCGATGGTGCC
64 GGGCCTAGGTTGCCGATGGTGCC
* * **
95739494 CGAGGCTCCTGCACATCCAAGGGCCTAGGTGCCGATGGT-CCCGAGGCTCTTGCACGAT-CAAGG
1 CGAGGCTCCCGCACATCCAAGGACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAGG
95739557 GCCTAGGTTGCCGATGGTGCC
66 GCCTAGGTTGCCGATGGTGCC
* * * * *
95739578 CGAGGTTCCCACACGA-CCACGGGCCTAGGTTGTCGATGGTGCCCGAGGCTCCCGCAC-ATCCAA
1 CGAGGCTCCCGCAC-ATCCAAGGACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGATCCAA
** * * * * *
95739641 GCACCAAGG-TGCCAATGCTACT
64 GGGCCTAGGTTGCCGATGGTGCC
* * *
95739663 CGAGGCTCCCGCACATCCAAGGCACCAAGGTGCCGCTGGTGCCCGAGCCTCCCGCACGAT-CAAG
1 CGAGGCTCCCGCACATCCAAGG-ACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAG
* * **
95739727 GACCGAGGTTGCCGATGGTGTT
65 GGCCTAGGTTGCCGATGGTGCC
* * * * * * *
95739749 TGAGGCCCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCTCACACGAT-CAA-G
1 CGAGGCTCCCGCACATCCAAGGACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAGG
95739812 GCCTAGGTTGCCGATGGTGCC
66 GCCTAGGTTGCCGATGGTGCC
* * * * *
95739833 CGAGGTTCTCGCACGAT-CAAGG-GCTAGGTTGCCGATGGTGCCAGAGGCTCCCGCACGA-CCAG
1 CGAGGCTCCCGCAC-ATCCAAGGACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGATCCAA
95739895 GGGCCTAGGTTGCCGATGGTGCC
64 GGGCCTAGGTTGCCGATGGTGCC
* * * * **
95739918 CGAGGCTCCTGCACATCTAAGGGCCTAGGTGCCGATGGTGGCCGAGGCTCCATCACGA-CCAAGG
1 CGAGGCTCCCGCACATCCAAGGACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAGG
95739982 GCCTAGG-TGCCGATGGT-CC
66 GCCTAGGTTGCCGATGGTGCC
* * * * * * * *
95740001 CGTGGCTCTCACACGA-CCAAGGGCCTAGGTTGTCGATGGTGCCCGAAGTTCCCGCACGA-CCAG
1 CGAGGCTCCCGCAC-ATCCAAGGACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGATCCAA
*
95740064 GGGCCTAGGTTGCCGTTGGTGCC
64 GGGCCTAGGTTGCCGATGGTGCC
* * * *
95740087 CGAGGCTCCCGCACATCCAAGCACCAATGTGCCGATGGTACCCGAGGCTCCCGCACGA-CCAAGG
1 CGAGGCTCCCGCACATCCAAGGACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAGG
95740151 GCCTAGG-TGCCGATGGTGCC
66 GCCTAGGTTGCCGATGGTGCC
* * * * * * ** * *
95740171 CGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGTCGATGGTGGCCAAAGCTCCTACATGA-CCAG
1 CGAGGCTCCCGCAC-ATCCAAGGACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGATCCAA
*
95740234 GGGCCTAGG-TGCCGATGGTGGC
64 GGGCCTAGGTTGCCGATGGTGCC
* *
95740256 CGAGGCTCCCGCACGA-CCAAGCG-TCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACGA-CCA
1 CGAGGCTCCCGCAC-ATCCAAG-GACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGATCCA
* * *
95740318 GGGGCCTAGGTT-CCAATAGTAGCC
63 AGGGCCTAGGTTGCCGATGGT-GCC
* * * * *
95740342 CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCAAGG
1 CGAGGCTCCCGCACATCCAAGGACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAGG
* * * *
95740406 CACCAAGG-TGCCGATGGTACA
66 -GCCTAGGTTGCCGATGGTGCC
* * * ** *
95740427 CGATGCTCCCGCACGA-CCAAGGGCCGAGGTTGCCGATGGTGTTCAAGGCTCCCGCAC-ATCCAA
1 CGAGGCTCCCGCAC-ATCCAAGGACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGATCCAA
*
95740490 --G-C-A-----CC-AAGGTGCC
64 GGGCCTAGGTTGCCGATGGTGCC
* * * * ** * ** * *
95740503 GCGAGTCTCTCGCACACCCAAGGGCCTAGGTTGCCGATGGTGGTCTAGGCTCCCTAACGA-CTAG
1 -CGAGGCTCCCGCACATCCAAGGACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGATCCAA
95740567 GGGCCTAGGTT-CCGATGGTGCC
64 GGGCCTAGGTTGCCGATGGTGCC
* * *** ** * *
95740589 CGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGT-ATTGAGGCTCCTACGCGA-CCAG
1 CGAGGCTCCCGCAC-ATCCAAGGACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGATCCAA
95740651 GGGCCTAGGTTGCCGATGGTGCC
64 GGGCCTAGGTTGCCGATGGTGCC
* * * * *
95740674 CGAGGCTCTCGCACATCCAAGCACCAAGGTGCCGGTGGTGCCCGAGGCTCCCGCAC-ATCCAAGC
1 CGAGGCTCCCGCACATCCAAGGACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAGG
* * * * *
95740738 ACCAAGG-TGCCAATGCTGCT
66 GCCTAGGTTGCCGATGGTGCC
* * * *
95740758 CGAGGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGCCCGAGGTTCTCGCACGAT-CGA-
1 CGAGGCTCCCGCACATCCAAGG-ACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAG
*
95740821 GGCCTAGGTTTCCGATGGTGCC
65 GGCCTAGGTTGCCGATGGTGCC
* * * * *
95740843 CGAGGCTCTCGCACATCCAAGCACCAAGGTGCCGGTGGTGCCCGAGGCTCCCGCAC-ATCCAAGC
1 CGAGGCTCCCGCACATCCAAGGACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAGG
* * * * *
95740907 ACCAAGG-TGCCAATGCTGCT
66 GCCTAGGTTGCCGATGGTGCC
*
95740927 CGAGGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG
1 CGAGGCTCCCGCACATCCAAGG-ACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAG
* **
95740991 GGCCGAGGTTGCCGATGGTGTT
65 GGCCTAGGTTGCCGATGGTGCC
** * * *
95741013 CGAGGCTCCCGCACATCCAACCACCAAGGTGCCGATGGTGCCCGAGGTTCTCGCACGAT-CAA-G
1 CGAGGCTCCCGCACATCCAAGGACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAGG
*
95741076 GCCTAGGTTTCCGATGGTGCC
66 GCCTAGGTTGCCGATGGTGCC
* *
95741097 CGAGGTTCTCGCACGAT-CAAGG-CCTAGGATGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAA
1 CGAGGCTCCCGCAC-ATCCAAGGACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGATCCAA
*
95741159 GGGCCTAGGTTGCCGGTGGTGCC
64 GGGCCTAGGTTGCCGATGGTGCC
* * * *
95741182 CGAGGCTCCCGTACATCCAAGGGCCTAGGTGCCGATGGTGGCCGAGGCTCCCGTACGA-CCAAGG
1 CGAGGCTCCCGCACATCCAAGGACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAGG
95741246 GCCTAGG-TGCCGATGGT-CC
66 GCCTAGGTTGCCGATGGTGCC
* * * * * * * *
95741265 CGTGGCTCTCACACGA-CCAAGGGCCTAGGTTGTCGATGGTG-TCGAGGCTCCCGCGCGA-CCAG
1 CGAGGCTCCCGCAC-ATCCAAGGACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGATCCAA
95741327 GGGCCTAGGTTGCCGATGGTGCC
64 GGGCCTAGGTTGCCGATGGTGCC
* * *
95741350 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGA-CCAG
1 CGAGGCTCCCGCAC-ATCCAAGGACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGATCCAA
*
95741413 GGGCCTAGGTTGCCGATGCTGCC
64 GGGCCTAGGTTGCCGATGGTGCC
* * * *
95741436 TGAGGCTCTCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG
1 CGAGGCTCCCGCACATCCAAGGACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAGG
*
95741500 GCCTAGG-TGCCGATGGTACC
66 GCCTAGGTTGCCGATGGTGCC
* * * ** * * ** * *
95741520 CGAGTCTCTCGCATGA-CCAAGGGGCTAGGTTGCCGATGGTGGCCGAAGCTCCTACATGA-CCAG
1 CGAGGCTCCCGCA-CATCCAAGGACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGATCCAA
*
95741583 GGGCCTAGG-TGCCGATGGTGAC
64 GGGCCTAGGTTGCCGATGGTGCC
* * *
95741605 CGAGGCTTCCGCACGA-CCAAGCG-CCTAGGTTGCCGATGGTGCCCAAGGCTCTCGCACGA-CCA
1 CGAGGCTCCCGCAC-ATCCAAG-GACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGATCCA
95741667 AGGGCCTAGGTT-CCGATGGTGCC
63 AGGGCCTAGGTTGCCGATGGTGCC
* * * * ** * *
95741690 CGAGGCTCTCGCATGA-CCAAGGGCCTAGGTTGTCGATGGT-ATCGAGGCTCCCGCGCGA-CCAG
1 CGAGGCTCCCGCA-CATCCAAGGACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGATCCAA
95741752 GGGCCTAGGTTGCCGATGGTGCC
64 GGGCCTAGGTTGCCGATGGTGCC
95741775 CGAGGCTCCCGCACATCCAAG
1 CGAGGCTCCCGCACATCCAAG
95741796 CGGTGTTGTT
Statistics
Matches: 2134, Mismatches: 334, Indels: 180
0.81 0.13 0.07
Matches are distributed among these distances:
76 6 0.00
77 51 0.02
78 1 0.00
79 1 0.00
80 1 0.00
81 2 0.00
82 1 0.00
83 86 0.04
84 539 0.25
85 1098 0.51
86 348 0.16
ACGTcount: A:0.18, C:0.33, G:0.32, T:0.17
Consensus pattern (86 bp):
CGAGGCTCCCGCACATCCAAGGACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAGG
GCCTAGGTTGCCGATGGTGCC
Found at i:95741083 original size:23 final size:23
Alignment explanation
Indices: 95741057--95741124 Score: 63
Period size: 23 Copynumber: 3.1 Consensus size: 23
95741047 ATGGTGCCCG
95741057 AGGTTCTCGCACGATCAAGGCCT
1 AGGTTCTCGCACGATCAAGGCCT
*** * *
95741080 AGGTT-T--C-CGATGGTGCCCG
1 AGGTTCTCGCACGATCAAGGCCT
95741099 AGGTTCTCGCACGATCAAGGCCT
1 AGGTTCTCGCACGATCAAGGCCT
95741122 AGG
1 AGG
95741125 ATGCCGATGG
Statistics
Matches: 31, Mismatches: 10, Indels: 8
0.63 0.20 0.16
Matches are distributed among these distances:
19 12 0.39
20 2 0.06
22 2 0.06
23 15 0.48
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (23 bp):
AGGTTCTCGCACGATCAAGGCCT
Found at i:95741736 original size:127 final size:128
Alignment explanation
Indices: 95739153--95741788 Score: 2418
Period size: 127 Copynumber: 20.8 Consensus size: 128
95739143 CCTTGCAGCT
* * * * *
95739153 CGAGGCACCCGCAC-ATCCAACGTCCTAGGTTGTCGATGGTGTCCGAGGCTCCCGCAC-ATCCAA
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAA
** * * * * * * *
95739216 GCACCAAGG-TGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCAAGGTACCAAGG-TGCCGTTGGT
63 GGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGGT
95739278 GCC
126 GCC
* ** *
95739281 CGAGGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATGGTGTTCGAGGGTCCCGCAC-ATCCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG
** * * *
95739345 CACCAAGG-TGCCGATGGTGCCCGA-GCTTCTCGCACGATCAA-GGCCTAGGTTGCCGATGGTGC
64 GGCCTAGGTTGCCGATGGTGCCCGAGGC-TCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGC
95739407 C
128 C
* * *
95739408 AGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCTGCAC-ATCCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG
*
95739472 GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCTGCAC-ATCCAAGGGCCTAGG-TGCCGATGGT-C
64 GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGC
95739534 C
128 C
** * * * *
95739535 CGAGGCTCTTGCACGATCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGTTCCCACACGACCACGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* ** * * * * *
95739600 GCCTAGGTTGTCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTACT
65 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * *
95739663 CGAGGCTCCCGCAC-ATCCAAGGCACCAAGGTGCCGCTGGTGCCCGAGCCTCCCGCACGATCAAG
1 CGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
* * *** * ** *
95739727 GACCGAGGTTGCCGATGGTGTTTGAGGCCCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGC
64 GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGC
95739790 C
128 C
* * * * * * *
95739791 CGAGGTTCTCACACGATCAA-GGCCTAGGTTGCCGATGGTGCCCGAGGTTCTCGCACGATCAAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* *
95739855 G-CTAGGTTGCCGATGGTGCCAGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCC
65 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * **
95739918 CGAGGCTCCTGCAC-ATCTAAGGGCCTAGGTGCCGATGGTGGCCGAGGCTCCATCACGACCAAGG
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * * *
95739982 GCCTAGG-TGCCGATGGT-CCCGTGGCTCTCACACGACCAAGGGCCTAGGTTGTCGATGGTGCC
65 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * *
95740044 CGAAGTTCCCGCACGACCAGGGGCCTAGGTTGCCGTTGGTGCCCGAGGCTCCCGCAC-ATCCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG
** * * *
95740108 CACCAATG-TGCCGATGGTACCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
64 GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * * ** * *
95740171 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGTCGATGGTGGCCAAAGCTCCTACATGACCAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * * *
95740236 GCCTAGG-TGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGCGTCTAGGTTGCCGATGGTGGC
65 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * *
95740299 CGAGGCTCCCGCACGACCAGGGGCCTAGGTTCCAATAGTAGCCCGAGGCTCCCGCAC-ATCCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGT-GCCCGAGGCTCCCGCACGA-CCAAG
** * * * * * * *
95740363 CACCAAGG-TGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCAAGGCACCAAGG-TGCCGATGGTA
64 GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGGTG
*
95740425 CA
127 CC
* * ** *
95740427 CGATGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATGGTGTTCAAGGCTCCCGCAC-ATCCAA-
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG
* * *
95740490 -G-C-A-----CC-AAGGTGCCGCGAGTCTCTCGCAC-ACCCAAGGGCCTAGGTTGCCGATGGTG
64 GGCCTAGGTTGCCGATGGTGCC-CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTG
**
95740545 GT
127 CC
* ** * * * *
95740547 CTAGGCTCCCTAACGACTAGGGGCCTAGGTTCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*** ** * *
95740612 CCTAGGTTGCCGATGGT-ATTGAGGCTCCTACGCGACCAGGGGCCTAGGTTGCCGATGGTGCC
66 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* ** * *
95740674 CGAGGCTCTCGCAC-ATCCAAGCACCAAGGTGCCGGTGGTGCCCGAGGCTCCCGCAC-ATCCAAG
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG
** * * * * * *
95740737 CACCAAGG-TGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCAAGGCACCAAGG-TGCCGATGGTG
64 GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGGTG
95740799 CC
127 CC
* * * * * *
95740801 CGAGGTTCTCGCACGATCGA-GGCCTAGGTTTCCGATGGTGCCCGAGGCTCTCGCAC-ATCCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG
** * * ** * * *
95740864 CACCAAGG-TGCCGGTGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGC
64 GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGC
*
95740926 T
128 C
* *
95740927 CGAGGCTCCCGCAC-ATCCAAGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
1 CGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
* ** *** *
95740991 GGCCGAGGTTGCCGATGGTGTTCGAGGCTCCCGCAC-ATCCAACCACCAAGG-TGCCGATGGTGC
64 GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGC
95741054 C
128 C
* * * * * * *
95741055 CGAGGTTCTCGCACGATCAA-GGCCTAGGTTTCCGATGGTGCCCGAGGTTCTCGCACGATCAA-G
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* *
95741118 GCCTAGGATGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGGTGGTGCC
65 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
95741182 CGAGGCTCCCGTAC-ATCCAAGGGCCTAGGTGCCGATGGTGGCCGAGGCTCCCGTACGACCAAGG
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * * * *
95741246 GCCTAGG-TGCCGATGGT-CCCGTGGCTCTCACACGACCAAGGGCCTAGGTTGTCGATGGTG-T
65 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
95741307 CGAGGCTCCCGCGCGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * *
95741372 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACCAGGGGCCTAGGTTGCCGATGCTGCC
65 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * ** *
95741436 TGAGGCTCTCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * * * * *
95741500 GCCTAGG-TGCCGATGGTACCCGAGTCTCTCGCATGACCAAGGGGCTAGGTTGCCGATGGTGGC
65 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* ** * * * * *
95741563 CGAAGCTCCTACATGACCAGGGGCCTAGGTGCCGATGGTGACCGAGGCTTCCGCACGACCAAGCG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
95741628 CCTAGGTTGCCGATGGTGCCCAAGGCTCTCGCACGACCAAGGGCCTAGGTT-CCGATGGTGCC
66 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * ** * *
95741690 CGAGGCTCTCGCATGACCAAGGGCCTAGGTTGTCGATGGT-ATCGAGGCTCCCGCGCGACCAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
95741754 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
65 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
95741789 ATCCAAGCGG
Statistics
Matches: 2065, Mismatches: 371, Indels: 145
0.80 0.14 0.06
Matches are distributed among these distances:
119 36 0.02
120 54 0.03
121 1 0.00
122 1 0.00
123 1 0.00
124 1 0.00
125 26 0.01
126 283 0.14
127 966 0.47
128 642 0.31
129 54 0.03
ACGTcount: A:0.18, C:0.33, G:0.32, T:0.17
Consensus pattern (128 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
Found at i:95744883 original size:43 final size:42
Alignment explanation
Indices: 95744868--95745068 Score: 183
Period size: 42 Copynumber: 4.7 Consensus size: 42
95744858 TGATGGTGTC
95744868 CGAGGCTCCCGCACATCCAAGCGCCAAGGTGCGAATGCTGCT
1 CGAGGCTCCCGCACATCCAAGCGCCAAGGTGCGAATGCTGCT
* * *
95744910 CGAGGCTCCCGCACATCCAAGCACCAAGGTACCAATGCTGCT
1 CGAGGCTCCCGCACATCCAAGCGCCAAGGTGCGAATGCTGCT
*** * *
95744952 CGAGGCTCTTACACATCCAAGGCACCAAGGTGCCG-ATGGTGC-
1 CGAGGCTCCCGCACATCCAA-GCGCCAAGGTG-CGAATGCTGCT
* * * ** * *
95744994 CTGAGGCTCTCGCACAACCAAGGGCTGAGGTTGCCG-ATGGTGTT
1 C-GAGGCTCCCGCACATCCAAGCGCCAAGG-TG-CGAATGCTGCT
* *
95745038 CGAGGCTCCCGTACATCCAAGCACCAAGGTG
1 CGAGGCTCCCGCACATCCAAGCGCCAAGGTG
95745069 TCGATGGTGC
Statistics
Matches: 130, Mismatches: 24, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
42 64 0.49
43 64 0.49
44 2 0.02
ACGTcount: A:0.23, C:0.33, G:0.28, T:0.16
Consensus pattern (42 bp):
CGAGGCTCCCGCACATCCAAGCGCCAAGGTGCGAATGCTGCT
Found at i:95744918 original size:42 final size:42
Alignment explanation
Indices: 95744789--95745083 Score: 220
Period size: 43 Copynumber: 6.9 Consensus size: 42
95744779 TTTTCTTTAG
* * * ** * *
95744789 CCCGTACATCCGAGCTACCAGGGTGCCCCTGCTGCTCAAGGCA
1 CCCGCACATCCAAGC-ACCAAGGTGCCGATGCTGCTCGAGGCT
* * * *
95744832 CCCACACATCCAA-CATCCTAGGTTGCTGATGGTG-TCCGAGGCT
1 CCCGCACATCCAAGCA-CCAAGG-TGCCGATGCTGCT-CGAGGCT
*
95744875 CCCGCACATCCAAGCGCCAAGGTG-CGAATGCTGCTCGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCG-ATGCTGCTCGAGGCT
* *
95744917 CCCGCACATCCAAGCACCAAGGTACCAATGCTGCTCGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGCTGCTCGAGGCT
*** *
95744959 CTTACACATCCAAGGCACCAAGGTGCCGATGGTGC-CTGAGGCT
1 CCCGCACATCCAA-GCACCAAGGTGCCGATGCTGCTC-GAGGCT
* * ** ** * *
95745002 CTCGCACAACCAAGGGCTGAGGTTGCCGATGGTGTTCGAGGCT
1 CCCGCACATCCAAGCACCAAGG-TGCCGATGCTGCTCGAGGCT
* * * *
95745045 CCCGTACATCCAAGCACCAAGGTGTCGATGGTGCCCGAG
1 CCCGCACATCCAAGCACCAAGGTGCCGATGCTGCTCGAG
95745084 ATTCTTGCAC
Statistics
Matches: 198, Mismatches: 43, Indels: 23
0.75 0.16 0.09
Matches are distributed among these distances:
41 2 0.01
42 87 0.44
43 107 0.54
44 2 0.01
ACGTcount: A:0.22, C:0.34, G:0.27, T:0.18
Consensus pattern (42 bp):
CCCGCACATCCAAGCACCAAGGTGCCGATGCTGCTCGAGGCT
Found at i:95745062 original size:85 final size:85
Alignment explanation
Indices: 95744851--95745083 Score: 240
Period size: 85 Copynumber: 2.7 Consensus size: 85
95744841 CCAACATCCT
* * * *
95744851 AGGTTGCTGATGGTGTCCGAGGCTCCCGCACATCCAAGCGCCAAGGTGCGAATGCTG-CTCGAGG
1 AGGTTGCCGATGGTGTTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCG-ATGGTGCCTCGAGG
*
95744915 CTCCCGCACATCCAAGCACCA
65 CTCCCGCACAACCAAGCACCA
* * * * ***
95744936 AGG-TACCAATGCTGCTCGAGGCTCTTACACATCCAAGGCACCAAGGTGCCGATGGTGCCT-GAG
1 AGGTTGCCGATGGTGTTCGAGGCTCCCGCACATCCAA-GCACCAAGGTG-CGATGGTGCCTCGAG
* ** **
95744999 GCTCTCGCACAACCAAGGGCTG
64 GCTCCCGCACAACCAAGCACCA
*
95745021 AGGTTGCCGATGGTGTTCGAGGCTCCCGTACATCCAAGCACCAAGGTGTCGATGGTGCC-CGAG
1 AGGTTGCCGATGGTGTTCGAGGCTCCCGCACATCCAAGCACCAAGGTG-CGATGGTGCCTCGAG
95745084 ATTCTTGCAC
Statistics
Matches: 117, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
84 24 0.21
85 64 0.55
86 29 0.25
ACGTcount: A:0.21, C:0.31, G:0.30, T:0.18
Consensus pattern (85 bp):
AGGTTGCCGATGGTGTTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCGATGGTGCCTCGAGGC
TCCCGCACAACCAAGCACCA
Found at i:95745271 original size:42 final size:42
Alignment explanation
Indices: 95745107--95745860 Score: 658
Period size: 42 Copynumber: 17.9 Consensus size: 42
95745097 CAAGGCGTAA
* ** * *
95745107 GACCAAGGGCCTAGGTTGCCGAAGGT-ATCGAGGCTCCTGCGC
1 GACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCAC
**
95745149 GACCGGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
1 GACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCAC
* * *
95745192 GACCAGGGGCCTAGGTTGCTGATGGTGCCCGAGGCTCCCGTAC
1 GACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCAC
* *
95745235 -ATCCAAGGGCCTAGGTGACGATGGTGGCCGAGGCTCCCGCAC
1 GA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCAC
* *
95745277 GACCAAGGGCCTAGGTGCCGATGGT-CTCGAGGCTCTCGCAC
1 GACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCAC
* * * *
95745318 GACCAAGGGCCTAGGTTACCGATGGTACCTGAGGCTCCAGCAC
1 GACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCAC
* *
95745361 GACCAGGGGCCTAGGTTTCCGATGGTGCCCGAGGCTCCCG--C
1 GACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCAC
*
95745402 -ACC-A------AGGTGCCGATGGTGCCCGAGGCTCCTGCAC
1 GACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCAC
* *
95745436 GACCAAGGGCCTAGGTGCCGATAGTGCCCGAGGCTCTCGCAC
1 GACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCAC
* ** * * * ** *
95745478 AATGAAGGGCCTAGGTTACCGATGGTGGCCGAAGCTCCTACAA
1 GACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCAC
* * * *
95745521 GACCAGGGGCCTAAGTGCCGATGGTGGCCGAGGCTCCCCCAC
1 GACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCAC
*
95745563 GACC-AGAGGCCTAGGTGCCGATGGTGCCCGAGGCGCCCGCACATCC
1 GACCAAG-GGCCTAGGTGCCGATGGTGCCCGAGGCTCCCG--CA--C
* * * * * *
95745609 AAGTATCAAGGGCCTAGGTTCCGATTGTGCCCGAGGCTCTCGTAA
1 --G-ACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCAC
* ** * *
95745654 GACCAAGGGCCTAGGTTGCCGAAGGT-ATCGAGGCTCCTGCGC
1 GACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCAC
** * *
95745696 GACCGGGGGTCTAGGTTGCCGATGGTGCCCGAGGCTGCCGCAC
1 GACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCAC
** * * *
95745739 -ATCCAAGCACCAAGGTGCCGGTGGTGCCCGAGGCTCCCGCAT
1 GA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCAC
*
95745781 GACCAAGGGGCTAGGTGCCGATGGTGCCCGAGGCTCCCGCAC
1 GACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCAC
* * * * *
95745823 GACAAACGTCCTAGGTTGCCGATGGTGTCCAAGGCTCC
1 GACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCC
95745861 AGTACGTCCA
Statistics
Matches: 573, Mismatches: 109, Indels: 59
0.77 0.15 0.08
Matches are distributed among these distances:
32 22 0.04
33 3 0.01
34 1 0.00
35 3 0.01
36 1 0.00
40 3 0.01
41 30 0.05
42 285 0.50
43 188 0.33
44 2 0.00
46 1 0.00
47 1 0.00
48 1 0.00
49 30 0.05
50 2 0.00
ACGTcount: A:0.18, C:0.31, G:0.34, T:0.16
Consensus pattern (42 bp):
GACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCAC
Found at i:95745387 original size:169 final size:167
Alignment explanation
Indices: 95745107--95745862 Score: 773
Period size: 169 Copynumber: 4.5 Consensus size: 167
95745097 CAAGGCGTAA
* ** * **
95745107 GACCAAGGGCCTAGGTTGCCGAAGGT-ATCGAGGCTC-CTGCGCGACCGGGGGCCTAGGTTGCCG
1 GACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCTC-GCACGACCAAGGGCCTAGGTTGCCG
* * * *
95745170 ATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCTGATGGTGCCCGAGGCTCCCGTAC
64 ATGGT-ACCGAGGCTCCAGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
* *
95745235 ATCCAAGGGCCTAGGTGACGATGGTGGCCGAGGCTCCCGCAC
128 A-CC-AGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCAC
* *
95745277 GACCAAGGGCCTAGGTGCCGATGGT-CTCGAGGCTCTCGCACGACCAAGGGCCTAGGTTACCGAT
1 GACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGAT
*
95745341 GGTACCTGAGGCTCCAGCACGACCAGGGGCCTAGGTTTCCGATGGTGCCCGAGGCTCCCG--CAC
66 GGTACC-GAGGCTCCAGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACAC
*
95745404 CA------AGGTGCCGATGGTGCCCGAGGCTCCTGCAC
130 CAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCAC
* * ** *
95745436 GACCAAGGGCCTAGGTGCCGATAGTGCCCGAGGCTCTCGCACAATGAAGGGCCTAGGTTACCGAT
1 GACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGAT
* * * * * *
95745501 GGTGGCCGAAGCTCCTA-CAAGACCAGGGGCCTAAG-TGCCGATGGTGGCCGAGGCTCCCCCACG
66 GGT-ACCGAGGCTCC-AGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-
*
95745564 ACCAGAGGCCTAGGTGCCGATGGTGCCCGAGGCGCCCGCACATCC
128 ACCAG-GGCCTAGGTGCCGATGGTGCCCGAGGCTCCCG--CA--C
* * * * *
95745609 AAGTATCAAGGGCCTAGGTTCCGATTGTGCCCGAGGCTCTCGTAAGACCAAGGGCCTAGGTTGCC
1 --G-ACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCC
* * * * * * *
95745674 GAAGGTATCGAGGCTCCTGCGCGACCGGGGGTCTAGGTTGCCGATGGTGCCCGAGGCTGCCGCAC
63 GATGGTACCGAGGCTCCAGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
** * * *
95745739 ATCCAAGCACCAAGGTGCCGGTGGTGCCCGAGGCTCCCGCAT
128 A-CC-AGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCAC
* * * * *
95745781 GACCAAGGGGCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACAAACGTCCTAGGTTGCCGAT
1 GACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGAT
* *
95745846 GGTGTCCAAGGCTCCAG
66 GGT-ACCGAGGCTCCAG
95745863 TACGTCCAAG
Statistics
Matches: 489, Mismatches: 70, Indels: 54
0.80 0.11 0.09
Matches are distributed among these distances:
159 72 0.15
160 61 0.12
161 4 0.01
162 4 0.01
165 1 0.00
166 2 0.00
167 2 0.00
168 2 0.00
169 175 0.36
170 26 0.05
171 2 0.00
173 1 0.00
174 2 0.00
175 23 0.05
176 110 0.22
177 2 0.00
ACGTcount: A:0.18, C:0.31, G:0.35, T:0.16
Consensus pattern (167 bp):
GACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGAT
GGTACCGAGGCTCCAGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACACC
AGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCAC
Found at i:95745837 original size:127 final size:127
Alignment explanation
Indices: 95745406--95745858 Score: 386
Period size: 127 Copynumber: 3.5 Consensus size: 127
95745396 TCCCGCACCA
* *
95745406 AGGTGCCGATGGTGCCCGAGGCTCCTGCACGACC-AAGGGCCTAGGTGCCGATAGTGCCCGAGGC
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAGGGCCTAGGTGCCGATGGTGCCCGAGGC
* ** * * * * * **
95745470 T-CTCGCACAAT-GAAGGGCCTAGGTTACCGATGGTGGCCGAAGCTCCTACAAGACC-AGGGGCC
66 TGC-CGCAC-ATCCAAGCACCAAGG-TGCCGGTGGTGCCCGAGGCTCCCGCAAGACCAAGGGG-C
95745532 T
127 T
* * * *
95745533 AAGTGCCGATGGTGGCCGAGGCTCCCCCACGACCAGA-GGCCTAGGTGCCGATGGTGCCCGAGGC
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAGGGCCTAGGTGCCGATGGTGCCCGAGGC
* * * *
95745597 -GCCCGCACATCCAAGTATCAAGG-GCCTAGGTTCCGATTGTGCCCGAGGCTCTCGTAAGACCAA
66 TG-CCGCACATCCAAGCACCAAGGTGCC--GG-T--G---GTGCCCGAGGCTCCCGCAAGACCAA
*
95745660 GGGCCT
122 GGGGCT
* ** * * ** *
95745666 AGGTTGCCGAAGGT-ATCGAGGCTCCTGCGCGACC-GGGGGTCTAGGTTGCCGATGGTGCCCGAG
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAGGGCCTAGG-TGCCGATGGTGCCCGAG
*
95745729 GCTGCCGCACATCCAAGCACCAAGGTGCCGGTGGTGCCCGAGGCTCCCGCATGACCAAGGGGCT
64 GCTGCCGCACATCCAAGCACCAAGGTGCCGGTGGTGCCCGAGGCTCCCGCAAGACCAAGGGGCT
* * * *
95745793 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CAAACGTCCTAGGTTGCCGATGGTGTCCAAGG
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAGGGCCTAGG-TGCCGATGGTGCCCGAGG
95745857 CT
65 CT
95745859 CCAGTACGTC
Statistics
Matches: 259, Mismatches: 47, Indels: 40
0.75 0.14 0.12
Matches are distributed among these distances:
125 2 0.01
126 12 0.05
127 138 0.53
128 3 0.01
130 2 0.01
132 2 0.01
133 45 0.17
134 51 0.20
135 4 0.02
ACGTcount: A:0.19, C:0.31, G:0.34, T:0.16
Consensus pattern (127 bp):
AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAGGGCCTAGGTGCCGATGGTGCCCGAGGC
TGCCGCACATCCAAGCACCAAGGTGCCGGTGGTGCCCGAGGCTCCCGCAAGACCAAGGGGCT
Found at i:95746008 original size:24 final size:24
Alignment explanation
Indices: 95745976--95746025 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
95745966 GATATTCCGA
*
95745976 GATGGCTCACCGGAGCACTGCCGG
1 GATGGCTCACCGGAGCACCGCCGG
95746000 GATGGCTCACCGGAGCACCGCCGG
1 GATGGCTCACCGGAGCACCGCCGG
95746024 GA
1 GA
95746026 ACCTAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.18, C:0.34, G:0.38, T:0.10
Consensus pattern (24 bp):
GATGGCTCACCGGAGCACCGCCGG
Found at i:95746511 original size:58 final size:59
Alignment explanation
Indices: 95746420--95746541 Score: 176
Period size: 58 Copynumber: 2.1 Consensus size: 59
95746410 GGGAGGGACA
* *
95746420 GGGATGATTCATTCATTGTTGGGTATCAGACATGCAACGGTATCCGAATCCTACC-TTT
1 GGGATGATTCATTCATTATTGGGTACCAGACATGCAACGGTATCCGAATCCTACCTTTT
* * *
95746478 GGGATGATTCATTCATTATTGGGTACC-GAACATGTAACGGTATCTGAATTCTACCTTTT
1 GGGATGATTCATTCATTATTGGGTACCAG-ACATGCAACGGTATCCGAATCCTACCTTTT
95746537 GGGAT
1 GGGAT
95746542 TGGGGAGGGA
Statistics
Matches: 57, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
57 1 0.02
58 48 0.84
59 8 0.14
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (59 bp):
GGGATGATTCATTCATTATTGGGTACCAGACATGCAACGGTATCCGAATCCTACCTTTT
Found at i:95750050 original size:24 final size:24
Alignment explanation
Indices: 95750018--95750093 Score: 98
Period size: 24 Copynumber: 3.2 Consensus size: 24
95750008 TCGATATTCT
95750018 GGGATGGCTCGCCGGAGCACCGCC
1 GGGATGGCTCGCCGGAGCACCGCC
95750042 GGGATGGCTCGCCGGAGCACCGCC
1 GGGATGGCTCGCCGGAGCACCGCC
** * * * *
95750066 TAGATGGATCACTGGAGCACCGTC
1 GGGATGGCTCGCCGGAGCACCGCC
95750090 GGGA
1 GGGA
95750094 ACCTAACCGG
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.17, C:0.32, G:0.39, T:0.12
Consensus pattern (24 bp):
GGGATGGCTCGCCGGAGCACCGCC
Found at i:95756180 original size:58 final size:58
Alignment explanation
Indices: 95756083--95756195 Score: 181
Period size: 58 Copynumber: 1.9 Consensus size: 58
95756073 GGGAAGGACA
* * *
95756083 GGGATGATTCATTCATTGTTGGGTACCGGACATGCAACGGTATCTGAATCCTACCATT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCTGAATCCTACCATT
* *
95756141 GGGACGATTCATTCATTATTGGGTACCGAACATGTAACGGTATCTGAATTCTACC
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCTGAATCCTACC
95756196 TTTTGGGATA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
58 50 1.00
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (58 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCTGAATCCTACCATT
Found at i:95763925 original size:253 final size:253
Alignment explanation
Indices: 95763477--95763981 Score: 965
Period size: 253 Copynumber: 2.0 Consensus size: 253
95763467 GCACGAGAAC
*
95763477 TACGAGGGACAAAATCCCATTGGGACTTGGTCGAGCCAAGACCGAGCCTACAAACTCAACTTACG
1 TACGAGGGAAAAAATCCCATTGGGACTTGGTCGAGCCAAGACCGAGCCTACAAACTCAACTTACG
95763542 CCCCCCTAGGGAGCCGTTGCCGTCAAAGGGACTTGGTACTGGGGTCACGGGCAGCTTCGAATGCA
66 CCCCCCTAGGGAGCCGTTGCCGTCAAAGGGACTTGGTACTGGGGTCACGGGCAGCTTCGAATGCA
* *
95763607 GGCAAGGCCTTGGCAAGGCTAAGGCACCGATGGGTCGCCGACTTGGAAGGCACAAGGCGTCCTTA
131 AGCAAGGCCTTGGCAAGGCCAAGGCACCGATGGGTCGCCGACTTGGAAGGCACAAGGCGTCCTTA
95763672 ACATGACGGGGGAGAATGGGCAAGCCAAGCTCGAGCCCATAGCAATGCATAAGCCACT
196 ACATGACGGGGGAGAATGGGCAAGCCAAGCTCGAGCCCATAGCAATGCATAAGCCACT
95763730 TACGAGGGAAAAAATCCCATTGGGACTTGGTCGAGCCAAGACCGAGCCTACAAACTCAACTTACG
1 TACGAGGGAAAAAATCCCATTGGGACTTGGTCGAGCCAAGACCGAGCCTACAAACTCAACTTACG
95763795 CCCCCCTAGGGAGCCGTTGCCGTCAAAGGGACTTGGTACTGGGGTCACGGGCAGCTTCGAATGCA
66 CCCCCCTAGGGAGCCGTTGCCGTCAAAGGGACTTGGTACTGGGGTCACGGGCAGCTTCGAATGCA
*
95763860 AGCAAGGCCTTGGCAAGGCCAAGGCGCCGATGGGTCGCCGACTTGGAAGGCACAAGGCGTCCTTA
131 AGCAAGGCCTTGGCAAGGCCAAGGCACCGATGGGTCGCCGACTTGGAAGGCACAAGGCGTCCTTA
*
95763925 ACATGACGGGGGAGAATGGGCAAGCCAAGCTTGAGCCCATAGCAATGCATAAGCCAC
196 ACATGACGGGGGAGAATGGGCAAGCCAAGCTCGAGCCCATAGCAATGCATAAGCCAC
95763982 CCCAAGAGAT
Statistics
Matches: 247, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
253 247 1.00
ACGTcount: A:0.27, C:0.27, G:0.30, T:0.16
Consensus pattern (253 bp):
TACGAGGGAAAAAATCCCATTGGGACTTGGTCGAGCCAAGACCGAGCCTACAAACTCAACTTACG
CCCCCCTAGGGAGCCGTTGCCGTCAAAGGGACTTGGTACTGGGGTCACGGGCAGCTTCGAATGCA
AGCAAGGCCTTGGCAAGGCCAAGGCACCGATGGGTCGCCGACTTGGAAGGCACAAGGCGTCCTTA
ACATGACGGGGGAGAATGGGCAAGCCAAGCTCGAGCCCATAGCAATGCATAAGCCACT
Found at i:95764198 original size:35 final size:35
Alignment explanation
Indices: 95764129--95764198 Score: 104
Period size: 35 Copynumber: 2.0 Consensus size: 35
95764119 TCATGCGAGA
* * * *
95764129 CTATCTGACCCCCGTGGGGGCTGCGGATGTACCCC
1 CTATCCGACCCCCCTGGGGGCTGCGGACGCACCCC
95764164 CTATCCGACCCCCCTGGGGGCTGCGGACGCACCCC
1 CTATCCGACCCCCCTGGGGGCTGCGGACGCACCCC
95764199 ACCTCGGGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.11, C:0.43, G:0.30, T:0.16
Consensus pattern (35 bp):
CTATCCGACCCCCCTGGGGGCTGCGGACGCACCCC
Found at i:95765773 original size:46 final size:46
Alignment explanation
Indices: 95765720--95765895 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
95765710 TGGTTGAGCA
*
95765720 TCCGAACTCGTTGAGTTGATTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
95765766 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * **
95765811 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
95765859 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
95765896 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.58
47 27 0.26
48 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:95765876 original size:93 final size:93
Alignment explanation
Indices: 95765717--95765888 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
95765707 GGATGGTTGA
* * *** *
95765717 GCATCCGAACTCGTTGAGTTGATTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACACCCGAACTCGTTGAGT
95765782 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
95765810 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACACCCGAACTCGTTGAGT
95765875 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
95765889 CTTATGGGCG
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:95767907 original size:24 final size:23
Alignment explanation
Indices: 95767871--95767915 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
95767861 TATATTAGTG
*
95767871 AAAGATTTATTGATCAGAAGCGT
1 AAAGATTTATTGAGCAGAAGCGT
*
95767894 AAAGAATTTCTTGAGCAGAAGC
1 AAAG-ATTTATTGAGCAGAAGC
95767916 AAGGTAATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.40, C:0.11, G:0.22, T:0.27
Consensus pattern (23 bp):
AAAGATTTATTGAGCAGAAGCGT
Found at i:95768369 original size:43 final size:43
Alignment explanation
Indices: 95768308--95768397 Score: 162
Period size: 43 Copynumber: 2.1 Consensus size: 43
95768298 GGCAGCCAGT
*
95768308 GTAGGGAACTCGAGATTTGTTAAACCTGAGTGCCAGCGGTGTG
1 GTAGGGAACTCGAGATTTGTTAAACCTGAGTGCCAACGGTGTG
*
95768351 GTAGGGAACTTGAGATTTGTTAAACCTGAGTGCCAACGGTGTG
1 GTAGGGAACTCGAGATTTGTTAAACCTGAGTGCCAACGGTGTG
95768394 GTAG
1 GTAG
95768398 AAATCATTTT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.24, C:0.14, G:0.34, T:0.27
Consensus pattern (43 bp):
GTAGGGAACTCGAGATTTGTTAAACCTGAGTGCCAACGGTGTG
Found at i:95780345 original size:85 final size:84
Alignment explanation
Indices: 95780188--95780450 Score: 251
Period size: 85 Copynumber: 3.1 Consensus size: 84
95780178 TTTTCTTTAG
* * ** * * ** * *
95780188 CCCGCACATCCGAGCCACCAGGGTGCCCCTACTACTCGAGGAACCCGCACATCCAA-CGTCCTAG
1 CCCGCACATCCAAG-CACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCACATCCAAGC-ACCAAG
* *
95780252 GTTGCCGATAGTGTCCGAGGCT
64 G-TGCCGATGGTGCCCGAGGCT
95780274 CCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCACATCCAAGGCACCAAGG
1 CCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCACATCCAA-GCACCAAGG
*
95780339 TACCGATGGTGCCCGAGGCT
65 TGCCGATGGTGCCCGAGGCT
** ** * * * *
95780359 CCCGCACGA-CCAAGGGCTGAGGTTGTCGATGGTGTTCGAGGCTCCCGCACATCCAAGCACCAAG
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCTCGAGGCTCCCGCACATCCAAGCACCAAG
*
95780423 GTGCCGATGGTGCCCGAGGTT
64 GTGCCGATGGTGCCCGAGGCT
*
95780444 CTCGCAC
1 CCCGCAC
95780451 GATCAAGGCC
Statistics
Matches: 149, Mismatches: 24, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
85 100 0.67
86 48 0.32
87 1 0.01
ACGTcount: A:0.21, C:0.36, G:0.27, T:0.16
Consensus pattern (84 bp):
CCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGT
GCCGATGGTGCCCGAGGCT
Found at i:95780356 original size:43 final size:43
Alignment explanation
Indices: 95780231--95780486 Score: 249
Period size: 43 Copynumber: 6.0 Consensus size: 43
95780221 ACTCGAGGAA
* * * * *
95780231 CCCGCACATCCAACG-TCCTAGGTTGCCGATAGTGTCCGAGGCT
1 CCCGCACATCCAAGGCACCAAGG-TGCCGATGGTGCCCGAGGCT
* * *
95780274 CCCGCACATCCAA-GCACCAAGGTGCCAATGCTGCTCGAGGCT
1 CCCGCACATCCAAGGCACCAAGGTGCCGATGGTGCCCGAGGCT
*
95780316 CCCGCACATCCAAGGCACCAAGGTACCGATGGTGCCCGAGGCT
1 CCCGCACATCCAAGGCACCAAGGTGCCGATGGTGCCCGAGGCT
* ** * **
95780359 CCCGCACGA-CCAAGG-GCTGAGGTTGTCGATGGTGTTCGAGGCT
1 CCCGCAC-ATCCAAGGCACCAAGG-TGCCGATGGTGCCCGAGGCT
*
95780402 CCCGCACATCCAA-GCACCAAGGTGCCGATGGTGCCCGAGGTT
1 CCCGCACATCCAAGGCACCAAGGTGCCGATGGTGCCCGAGGCT
* *
95780444 CTCGCACGAT-CAAGG--CCTAGGTTGCCGATGGTGCCCGAGGCT
1 CCCGCAC-ATCCAAGGCACCAAGG-TGCCGATGGTGCCCGAGGCT
95780486 C
1 C
95780487 TAGCACGATC
Statistics
Matches: 176, Mismatches: 28, Indels: 19
0.79 0.13 0.09
Matches are distributed among these distances:
41 5 0.03
42 80 0.45
43 90 0.51
44 1 0.01
ACGTcount: A:0.20, C:0.34, G:0.29, T:0.17
Consensus pattern (43 bp):
CCCGCACATCCAAGGCACCAAGGTGCCGATGGTGCCCGAGGCT
Found at i:95780416 original size:128 final size:127
Alignment explanation
Indices: 95780250--95780486 Score: 343
Period size: 128 Copynumber: 1.9 Consensus size: 127
95780240 CCAACGTCCT
*
95780250 AGGTTGCCGATAGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGC
1 AGGTTGCCGATAGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGCTGCCCGAGGC
95780315 TCCCGCAC-ATCCAAGGCACCAAGG-TACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTG
66 TCCCGCACGAT-CAAGG--CCAAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTG
* * * * * *
95780378 AGGTTGTCGATGGTGTTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGT
1 AGGTTGCCGATAGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGCTGCCCGAGGC
* * *
95780443 TCTCGCACGATCAAGGCCTAGGTTGCCGATGGTGCCCGAGGCTC
66 TCCCGCACGATCAAGGCCAAGGTTACCGATGGTGCCCGAGGCTC
95780487 TAGCACGATC
Statistics
Matches: 97, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
126 5 0.05
127 20 0.21
128 70 0.72
129 2 0.02
ACGTcount: A:0.20, C:0.32, G:0.31, T:0.17
Consensus pattern (127 bp):
AGGTTGCCGATAGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGCTGCCCGAGGC
TCCCGCACGATCAAGGCCAAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTG
Found at i:95780451 original size:85 final size:85
Alignment explanation
Indices: 95780256--95780486 Score: 288
Period size: 85 Copynumber: 2.7 Consensus size: 85
95780246 TCCTAGGTTG
* * * * * *
95780256 CCGATAGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCTCGAGGCTCCC
1 CCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GCCTAGGTTGCCGATGGTGCTCGAGGCTCCC
95780319 GCACATCCAAGGCACCAAGGTA
64 GCACATCCAAGGCACCAAGGTA
* * *
95780341 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTGAGGTTGTCGATGGTGTTCGAGGCTCCCG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCCT-AGGTTGCCGATGGTGCTCGAGGCTCCCG
*
95780406 CACATCCAA-GCACCAAGGTG
65 CACATCCAAGGCACCAAGGTA
* * * *
95780426 CCGATGGTGCCCGAGGTTCTCGCACGATCAAGGCCTAGGTTGCCGATGGTGCCCGAGGCTC
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGTGCTCGAGGCTC
95780487 TAGCACGATC
Statistics
Matches: 126, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
84 23 0.18
85 73 0.58
86 30 0.24
ACGTcount: A:0.20, C:0.33, G:0.30, T:0.16
Consensus pattern (85 bp):
CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGTGCTCGAGGCTCCCGC
ACATCCAAGGCACCAAGGTA
Found at i:95780470 original size:42 final size:42
Alignment explanation
Indices: 95780247--95780505 Score: 215
Period size: 42 Copynumber: 6.1 Consensus size: 42
95780237 CATCCAACGT
* * *
95780247 CCTAGGTTGCCGATAGTGTCCGAGGCTCCCGCAC-ATCCAAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGAT-CAAG-G
* * * *
95780290 CCAAGG-TGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCAAGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGAT-CAAGG
* * *
95780331 CACCAAGG-TACCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
1 --CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGATCAAGG
* * ** *
95780374 GCTGAGGTTGTCGATGGTGTTCGAGGCTCCCGCAC-ATCCAAGCA
1 CCT-AGGTTGCCGATGGTGCCCGAGGCTCCCGCACGAT-CAAG-G
* * *
95780418 CCAAGG-TGCCGATGGTGCCCGAGGTTCTCGCACGATCAAGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGATCAAGG
** *
95780459 CCTAGGTTGCCGATGGTGCCCGAGGCTCTAGCACGATCAAAG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGATCAAGG
95780501 CCTAG
1 CCTAG
95780506 ACTTTCATTC
Statistics
Matches: 175, Mismatches: 32, Indels: 19
0.77 0.14 0.08
Matches are distributed among these distances:
41 6 0.03
42 96 0.55
43 71 0.41
44 2 0.01
ACGTcount: A:0.21, C:0.32, G:0.30, T:0.17
Consensus pattern (42 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGATCAAGG
Found at i:95780794 original size:42 final size:43
Alignment explanation
Indices: 95780734--95781059 Score: 342
Period size: 42 Copynumber: 7.7 Consensus size: 43
95780724 NNNNGGTTCT
*
95780734 GATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCC
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
** * * * *
95780777 GATGGT-ATCGAGGCTCTCGCGCGACCAGGGGCCTAGGTTACC
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
** *
95780819 GATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCC
1 GATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCC
*
95780861 GGTGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
** *
95780904 GATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCC
1 GATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCC
* *
95780946 GGTGGTGCCCGAGGCTCCCGCACGACCAAGGGGCTAGG-TG-C
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
* * * * * *
95780987 AATGGTGTCCGAGGCTCCCGCACGACAAACGTCCTAGGTTACC
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
* * * * *
95781030 GATGGCGTCCAAGGCTCCAGCACGTCCAAG
1 GATGGTGCCCGAGGCTCCCGCACGACCAAG
95781060 CAGCAATGTG
Statistics
Matches: 233, Mismatches: 42, Indels: 16
0.80 0.14 0.05
Matches are distributed among these distances:
41 32 0.14
42 112 0.48
43 89 0.38
ACGTcount: A:0.19, C:0.34, G:0.33, T:0.15
Consensus pattern (43 bp):
GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
Found at i:95780877 original size:85 final size:84
Alignment explanation
Indices: 95780728--95781009 Score: 365
Period size: 85 Copynumber: 3.3 Consensus size: 84
95780718 NNNNNNNNNN
* * ** * * **
95780728 GGTTCTGATGGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGT-ATCGAGGC
1 GGTTCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGGTGGTGCCCGAGGC
* *
95780791 TCTCGCGCGACCAGGGGCCTA
64 TCCCGCACGACCAGGGGCCTA
95780812 GGTTACCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGGTGGTGCCCGAGGCT
1 GGTT-CCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGGTGGTGCCCGAGGCT
*
95780877 CCCGCACGACCAAGGGCCTA
65 CCCGCACGACCAGGGGCCTA
95780897 GGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGGTGGTGCCCGAGGCT
1 GGTT-CCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGGTGGTGCCCGAGGCT
95780962 CCCGCACGACCAAGGGG-CTA
65 CCCGCACGACC-AGGGGCCTA
* * *
95780982 GG-TGCAATGGTGTCCGAGGCTCCCGCAC
1 GGTTCCGATGGTGCCCGAGGCTCCCGCAC
95781010 GACAAACGTC
Statistics
Matches: 178, Mismatches: 16, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
83 22 0.12
84 15 0.08
85 137 0.77
86 4 0.02
ACGTcount: A:0.17, C:0.34, G:0.34, T:0.15
Consensus pattern (84 bp):
GGTTCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGGTGGTGCCCGAGGCTC
CCGCACGACCAGGGGCCTA
Found at i:95780962 original size:127 final size:126
Alignment explanation
Indices: 95780735--95781075 Score: 364
Period size: 127 Copynumber: 2.7 Consensus size: 126
95780725 NNNGGTTCTG
* * * *
95780735 ATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGT-ATCGAGGCTCTCGCGC
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGACCGAGGCTCCCGCAC
* ** * * * *
95780799 GA-CCAGGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCG
66 -ATCCAAGCACCAAGG-TGCCGGTGGTGCCCGAGGCTCCCGCACGA-CCAAGCACCAAGGTG-CA
* *
95780862 GTGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGACCGAGGCTCCCGCAC
*** *
95780927 ATCCAAGCACCAAGGTGCCGGTGGTGCCCGAGGCTCCCGCACGACCAAGGGGCTAGGTGCA
66 ATCCAAGCACCAAGGTGCCGGTGGTGCCCGAGGCTCCCGCACGACCAAGCACCAAGGTGCA
* * * * * * * * *
95780988 ATGGTGTCCGAGGCTCCCGCACGACAAACGTCCTAGGTTACCGATGGCGTCCAAGGCTCCAGCAC
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGACCGAGGCTCCCGCAC
* * *
95781053 GTCCAAGCAGCAATGTGCCGGTG
66 ATCCAAGCACCAAGGTGCCGGTG
95781076 CTCCCGCACC
Statistics
Matches: 181, Mismatches: 30, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
126 76 0.42
127 83 0.46
128 22 0.12
ACGTcount: A:0.19, C:0.33, G:0.33, T:0.15
Consensus pattern (126 bp):
ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGACCGAGGCTCCCGCAC
ATCCAAGCACCAAGGTGCCGGTGGTGCCCGAGGCTCCCGCACGACCAAGCACCAAGGTGCA
Found at i:95781321 original size:24 final size:24
Alignment explanation
Indices: 95781247--95781323 Score: 91
Period size: 24 Copynumber: 3.2 Consensus size: 24
95781237 TTCAATATTT
**
95781247 CGGGATGGCTCGCCGGAGCACTGC
1 CGGGATGGCTCGCCGGAGCACCAC
* * * *
95781271 TGAGATGGCTCGTCGGAACACCAC
1 CGGGATGGCTCGCCGGAGCACCAC
*
95781295 CGGGATGGATCGCCGGAGCACCAC
1 CGGGATGGCTCGCCGGAGCACCAC
95781319 CGGGA
1 CGGGA
95781324 ACCTAACCGG
Statistics
Matches: 42, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.19, C:0.31, G:0.38, T:0.12
Consensus pattern (24 bp):
CGGGATGGCTCGCCGGAGCACCAC
Found at i:95789107 original size:42 final size:42
Alignment explanation
Indices: 95789002--95789161 Score: 189
Period size: 42 Copynumber: 3.8 Consensus size: 42
95788992 AGGGCGCCCC
* * * * *
95789002 TGCTGCTCGAGGCACCCGCACATCCAATG-TCCTAGGTTGTCGA
1 TGCTGCTCGAGGCTCCCGCACATCCAA-GCACCAAGG-TGCCAA
*
95789045 TGGTG-TCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCAA
1 TGCTGCT-CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCAA
* *
95789087 TGCTTCTCGAGGCTCTCGCACATCCAAGCACCAAGGTGCCAA
1 TGCTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCAA
*
95789129 TGCTGCTCGAGTCTCCCGCACATCCAAGGCACC
1 TGCTGCTCGAGGCTCCCGCACATCCAA-GCACC
95789162 CGCACATCCA
Statistics
Matches: 101, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
42 67 0.66
43 34 0.34
ACGTcount: A:0.21, C:0.36, G:0.24, T:0.19
Consensus pattern (42 bp):
TGCTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCAA
Found at i:95789242 original size:42 final size:42
Alignment explanation
Indices: 95789176--95790061 Score: 892
Period size: 42 Copynumber: 21.0 Consensus size: 42
95789166 CATCCAATGT
** **
95789176 CCTAGGTTGCCGATGGTGTTCGAGGCTCCCGCAC-ATCCAAGCA
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * * *
95789219 CCAAGGTGTCGATGGTGCCCGAGGTTCTCGCACGATCAA-GG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * * *
95789260 TCTAGGTTGCCGATGGTGCCTGAGGTTCTCGCACGATCAA-GG
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
95789302 CCTAGGTTACAGATGGTGCCCGAGGCTCCCGCACGACCATGGG
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
95789345 CCTAGGTTGCCGATGGTGCTCGAGGCTCCTGCAC-ATCCAAGGG
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
*
95789388 CCTAGGTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
95789430 CCTAGGTACCGATGGT-CCCGAGGCTCTCGCACGACCAAGGG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
95789471 CTTAGGTTGCCGATGGTGCCCGAGGCTCCCGCATGACCAGGGG
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
95789514 CCTAGGTTGCCGATGGTGCCTGAGGCTCCCGCAC-ATCCAAGCAG
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GG
*
95789558 -CAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
95789599 CCT-GGTGCCGATGGTGCTCGAGCCTCTCGCACGACCAAGGG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * ** * *
95789640 CCTAGGTTGTCGATGGTGGCCGAAGCTCCTACATGACCAGGGG
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
95789683 CCTAGGTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
95789725 CCTAGGTTGCTGATGGTGGCCAAGGCTCCCGCACGACCAGGGG
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
95789768 CCTAGGTTCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * * *
95789810 CCTAGCTTCTGATGGTGCCCGAGGCTCTCGCACGAACAAGGG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* ** * ** *
95789852 CCTATGTTGCCGATGGT-ATCGAGGCTCCTGTGCGACCAGGGG
1 CCTA-GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* **
95789894 CCTAGGTTGCCGATGGTGCCCCAGGCTCCCGCAC-ATCCAAGCA
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * *
95789937 CCAAGGTGCCGGTGGTACCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * * * *
95789979 GCTAGGTGCCGATGGTACCCGAGGCTCCTGCACGACAAACGT
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * * *
95790021 CCTAGGTTGCCGATGGCGTCCAAGGCTCCAGCACGTCCAAG
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
95790062 CAGCAATGTG
Statistics
Matches: 703, Mismatches: 120, Indels: 40
0.81 0.14 0.05
Matches are distributed among these distances:
41 72 0.10
42 391 0.56
43 239 0.34
44 1 0.00
ACGTcount: A:0.18, C:0.32, G:0.33, T:0.17
Consensus pattern (42 bp):
CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
Found at i:95789308 original size:23 final size:23
Alignment explanation
Indices: 95789240--95789309 Score: 62
Period size: 23 Copynumber: 3.2 Consensus size: 23
95789230 ATGGTGCCCG
*
95789240 AGGTTCTCGCACGATCAAGGTCT
1 AGGTTCTCGCACGATCAAGGCCT
*
95789263 AGG-T-T-GC-CGAT--GGTGCCT
1 AGGTTCTCGCACGATCAAG-GCCT
95789281 GAGGTTCTCGCACGATCAAGGCCT
1 -AGGTTCTCGCACGATCAAGGCCT
95789305 AGGTT
1 AGGTT
95789310 ACAGATGGTG
Statistics
Matches: 36, Mismatches: 3, Indels: 16
0.65 0.05 0.29
Matches are distributed among these distances:
17 1 0.03
18 3 0.08
19 7 0.19
20 3 0.08
21 2 0.06
22 3 0.08
23 12 0.33
24 4 0.11
25 1 0.03
ACGTcount: A:0.19, C:0.24, G:0.31, T:0.26
Consensus pattern (23 bp):
AGGTTCTCGCACGATCAAGGCCT
Found at i:95789444 original size:169 final size:170
Alignment explanation
Indices: 95789176--95790036 Score: 1003
Period size: 169 Copynumber: 5.1 Consensus size: 170
95789166 CATCCAATGT
* ** * *
95789176 CCTAGGTTGCCGATGGTGTTCGAGGCTCCCGCACATCCAAGCACCAAGGTGTCGATGGTGCCCGA
1 CCTAGGTTGCCGATGGTGCTCGAGGCTCCCGCACATCCAAGGGCCTAGGTGCCGATGGTGCCCGA
* * * * * * *
95789241 GGTTCTCGCACGATCAA-GGTCTAGGTTGCCGATGGTGCCTGAGGTTCTCGCACGATCAA-GGCC
66 GGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCC
* * *
95789304 TAGGTTACAGATGGTGCCCGAGGCTCCCGCACGACCATGGG
130 TAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
95789345 CCTAGGTTGCCGATGGTGCTCGAGGCTCCTGCACATCCAAGGGCCTAGGTGCCGATGGTGGCCGA
1 CCTAGGTTGCCGATGGTGCTCGAGGCTCCCGCACATCCAAGGGCCTAGGTGCCGATGGTGCCCGA
* *
95789410 GGCTCCCGCACGACCAAGGGCCTAGGTACCGATGGT-CCCGAGGCTCTCGCACGACCAAGGGCTT
66 GGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCT
* *
95789474 AGGTTGCCGATGGTGCCCGAGGCTCCCGCATGACCAGGGG
131 AGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
95789514 CCTAGGTTGCCGATGGTGC-CTGAGGCTCCCGCACATCCAAGCAG-CAAGGTGCCGATGGTGCCC
1 CCTAGGTTGCCGATGGTGCTC-GAGGCTCCCGCACATCCAAG-GGCCTAGGTGCCGATGGTGCCC
* *
95789577 GAGGCTCCCGCACGACCAAGGGCCT-GGTGCCGATGGTGCTCGAGCCTCTCGCACGACCAAGGGC
64 GAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGC
* * * ** * *
95789641 CTAGGTTGTCGATGGTGGCCGAAGCTCCTACATGACCAGGGG
129 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
95789683 CCTAGG-TGCCGATGGTGGC-CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCTGATGGTGGC
1 CCTAGGTTGCCGATGGT-GCTCGAGGCTCCCGCAC-ATCCAAGGGCCTAGG-TGCCGATGGTGCC
* * *
95789745 CAAGGCTCCCGCACGACCAGGGGCCTAGGTTCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGG
63 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGG
* * * *
95789810 CCTAGCTT-CTGATGGTGCCCGAGGCTCTCGCACGAACAAGGG
128 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * ** *
95789852 CCTATGTTGCCGATGGT-ATCGAGGCTCCTGTGCGA-CCAGGGGCCTAGGTTGCCGATGGTGCCC
1 CCTAGGTTGCCGATGGTGCTCGAGGCTCCCGCAC-ATCCAAGGGCCTAGG-TGCCGATGGTGCCC
* ** * * * *
95789915 CAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCGGTGGTACCCGAGGCTCCCGCACGACCAAGGG
64 GAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGG
* * * * * *
95789979 GCTAGG-TGCCGATGGTACCCGAGGCTCCTGCACGACAAACGT
128 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
95790021 CCTAGGTTGCCGATGG
1 CCTAGGTTGCCGATGG
95790037 CGTCCAAGGC
Statistics
Matches: 597, Mismatches: 81, Indels: 28
0.85 0.11 0.04
Matches are distributed among these distances:
167 1 0.00
168 65 0.11
169 471 0.79
170 60 0.10
ACGTcount: A:0.18, C:0.31, G:0.34, T:0.17
Consensus pattern (170 bp):
CCTAGGTTGCCGATGGTGCTCGAGGCTCCCGCACATCCAAGGGCCTAGGTGCCGATGGTGCCCGA
GGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCT
AGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
Found at i:95790047 original size:85 final size:85
Alignment explanation
Indices: 95789176--95790061 Score: 926
Period size: 85 Copynumber: 10.5 Consensus size: 85
95789166 CATCCAATGT
* ** * *
95789176 CCTAGGTTGCCGATGGTGTTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGTCGATGGTGCCC
1 CCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
* * *
95789239 GAGGTTCTCGCACGATCAA-GG
64 GAGGCTCCCGCACGACCAAGGG
* * * * * *
95789260 TCTAGGTTGCCGATGGTGCCTGAGGTTCTCGCACGATCAA-GGCCTAGGTTACAGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGCC-GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
*
95789324 AGGCTCCCGCACGACCATGGG
65 AGGCTCCCGCACGACCAAGGG
* *
95789345 CCTAGGTTGCCGATGGTGCTCGAGGCTCCTGCAC-ATCCAAGGGCCTAGG-TGCCGATGGTGGCC
1 CCTAGGTTGCCGATGGTGC-CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
95789408 GAGGCTCCCGCACGACCAAGGG
64 GAGGCTCCCGCACGACCAAGGG
* * * *
95789430 CCTAGG-TACCGATGGTCCCGAGGCTCTCGCACGACCAAGGGCTTAGGTTGCCGATGGTGCCCGA
1 CCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
* *
95789494 GGCTCCCGCATGACCAGGGG
66 GGCTCCCGCACGACCAAGGG
* *
95789514 CCTAGGTTGCCGATGGTGCCTGAGGCTCCCGCAC-ATCCAAGCAG-CAAGG-TGCCGATGGTGCC
1 CCTAGGTTGCCGATGGTGCC-GAGGCTCCCGCACGA-CCAAG-GGCCTAGGTTGCCGATGGTGCC
95789576 CGAGGCTCCCGCACGACCAAGGG
63 CGAGGCTCCCGCACGACCAAGGG
* * * *
95789599 CCT-GG-TGCCGATGGTGCTCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGTCGATGGTGGCCG
1 CCTAGGTTGCCGATGGTGC-CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* ** * *
95789662 AAGCTCCTACATGACCAGGGG
65 AGGCTCCCGCACGACCAAGGG
* * *
95789683 CCTAGG-TGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCTGATGGTGGCCA
1 CCTAGGTTGCCGATGGT-GCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
*
95789747 AGGCTCCCGCACGACCAGGGG
65 AGGCTCCCGCACGACCAAGGG
* * *
95789768 CCTAGGTT-CCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGCTT-CTGATGGTGCCCG
1 CCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* *
95789831 AGGCTCTCGCACGAACAAGGG
65 AGGCTCCCGCACGACCAAGGG
* ** * ** * *
95789852 CCTATGTTGCCGATGGTATCGAGGCTCCTGTGCGACCAGGGGCCTAGGTTGCCGATGGTGCCCCA
1 CCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
**
95789917 GGCTCCCGCAC-ATCCAAGCA
66 GGCTCCCGCACGA-CCAAGGG
* * * * *
95789937 CCAAGG-TGCCGGTGGTACCCGAGGCTCCCGCACGACCAAGGGGCTAGG-TGCCGATGGTACCCG
1 CCTAGGTTGCCGATGGT-GCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * * *
95790000 AGGCTCCTGCACGACAAACGT
65 AGGCTCCCGCACGACCAAGGG
* * * *
95790021 CCTAGGTTGCCGATGGCGTCCAAGGCTCCAGCACGTCCAAG
1 CCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGACCAAG
95790062 CAGCAATGTG
Statistics
Matches: 668, Mismatches: 106, Indels: 55
0.81 0.13 0.07
Matches are distributed among these distances:
82 1 0.00
83 62 0.09
84 248 0.37
85 324 0.49
86 32 0.05
87 1 0.00
ACGTcount: A:0.18, C:0.32, G:0.33, T:0.17
Consensus pattern (85 bp):
CCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
GGCTCCCGCACGACCAAGGG
Found at i:95790280 original size:24 final size:24
Alignment explanation
Indices: 95790248--95790301 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
95790238 TTTCGATATT
*
95790248 CCGGGATGGCTCACCGGAGCACCG
1 CCGGGATGGATCACCGGAGCACCG
** *
95790272 CCGGGATGGATTGCCGGAGCGCCG
1 CCGGGATGGATCACCGGAGCACCG
95790296 CCGGGA
1 CCGGGA
95790302 ACCTAACCGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.15, C:0.33, G:0.43, T:0.09
Consensus pattern (24 bp):
CCGGGATGGATCACCGGAGCACCG
Found at i:95790788 original size:58 final size:59
Alignment explanation
Indices: 95790698--95790817 Score: 188
Period size: 58 Copynumber: 2.1 Consensus size: 59
95790688 GGAGGGACAT
* *
95790698 GGACGATTCATTCATTGTTGGGTACCGGACATGCAACGGTATCCGAATCCTA-CCTTTG
1 GGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTATCCTTTG
* * *
95790756 GGACGATTCATTCATTATTGGGTACCGAACATGTAACGGTATCCGAATTCTATCTTTTG
1 GGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTATCCTTTG
95790815 GGA
1 GGA
95790818 TTAGGGAGGG
Statistics
Matches: 56, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
58 48 0.86
59 8 0.14
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (59 bp):
GGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTATCCTTTG
Found at i:95796472 original size:5 final size:5
Alignment explanation
Indices: 95796466--95796499 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
95796456 CAAGAAGTAT
* *
95796466 GGCAT GGCAT GGCAC GGCAC GGCAC GGCAC GGCA
1 GGCAC GGCAC GGCAC GGCAC GGCAC GGCAC GGCA
95796500 GAAAATTGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.21, C:0.32, G:0.41, T:0.06
Consensus pattern (5 bp):
GGCAC
Found at i:95799516 original size:45 final size:45
Alignment explanation
Indices: 95799466--95799555 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
95799456 GCAGGCCGAC
95799466 TCCCGAAGCACGCAGGTGCCGAAGCACGCCGAGACGGCGCATGTT
1 TCCCGAAGCACGCAGGTGCCGAAGCACGCCGAGACGGCGCATGTT
95799511 TCCCGAAGCACGCAGGTGCCGAAGCACGCCGAGACGGCGCATGTT
1 TCCCGAAGCACGCAGGTGCCGAAGCACGCCGAGACGGCGCATGTT
95799556 AGATCCCACG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.22, C:0.33, G:0.33, T:0.11
Consensus pattern (45 bp):
TCCCGAAGCACGCAGGTGCCGAAGCACGCCGAGACGGCGCATGTT
Found at i:95803867 original size:42 final size:42
Alignment explanation
Indices: 95803768--95806438 Score: 2932
Period size: 42 Copynumber: 63.2 Consensus size: 42
95803758 CCCTGCTGCT
* * * *
95803768 CGAGGCACCCGCAC-ATCCAACGTCCTAGGTTGCCGATGGTGTC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGG-TGCCGATGGTGCC
* ** * * * *
95803811 CAAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCAATGCTGCT
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCC
** * ** ** *
95803853 CGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCTAATACTGCT
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCC
* *
95803895 CGAGGCTCCCGCAC-ATCCAAGGCACCAAGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTGCCGATGGTGCC
* * **
95803938 CGAGGCTCCCGCACGACCAAGGGTCGAGGTTGCCGATGGTGTT
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
* * ** *
95803981 TGAGGCTCCCGTAC-ATCCAAGCACCAAGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCC
* * *
95804023 CGAGGTTCTCGCACGATCAA-GGCCTAGGTGCCGATGGT-CC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
* *
95804063 CGAGGCTCTCACACGACCAAGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
** *
95804106 CGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCC
*
95804148 CGAGGCTCCCGCACGACCAAGGGCCTAGGGGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
* *
95804190 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
* ** * * *
95804233 CGAAGCTCCTACATGACC-AGGGTCCTAGGTGCCGATGCTGGC
1 CGAGGCTCCCGCACGACCAAGGG-CCTAGGTGCCGATGGTGCC
* * *
95804275 CGAGGCTCCCGCACGAGCAAGCGCCTAGGTTGCCGATGGTGGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
* *
95804318 CGAGGCACCCGCACGACCAAGGGCCTAGGTTCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
* *
95804360 CGAGGCACCCGCACGACCAAGGGCCTAGGTTCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
* *
95804402 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
* *
95804444 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
* *
95804486 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
* *
95804528 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
* *
95804570 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
* *
95804612 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
* *
95804654 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
* *
95804696 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
* *
95804738 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
* *
95804780 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
* * **
95804822 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATAGT-AT
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
* * * **
95804864 CGAGGCTCCCGCGCGACCAGGGGCCTAGGTTGCTGATGGT-AT
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
* ** *
95804906 CGAGGCTCCTGCGTGACCAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
** * * *
95804949 CGAGGCTCCCGCAC-ATCCAAGCACCAAGGTACCGGTGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCC
* *
95804991 CGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
** * * *
95805034 CGAGGCTCCCGCAC-ATCCAAGCACCAAGGTACCGGTGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCC
* *
95805076 CGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
** * * *
95805119 CGAGGCTCCCGCAC-ATCCAAGCACCAAGGTACCGGTGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCC
* *
95805161 CGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
*
95805204 CGAGGCTCCCGCAC-ATCCAAGGGCCTAGGTGCCGATGGTGGC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCC
** * * *
95805246 CGAGGCTCCTACATGACCAGGGGCCTAGGTGCCGATGGT-CT
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
95805287 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
* *
95805330 CGAGGCTCCCGGACGACCAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
* ** *
95805373 CGAGGCTCTCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCC
* * *
95805415 CGAGGCTCTCGCACGTCCAAGGGCCTAGGTTCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
* * * **
95805457 TGAGGCTCTCGCACGACCAAGGGCCTAGGTTACCGATGGT-AT
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
* * **
95805499 CGAGGCTCCCGCGCGACCAGGGGCCTAGGTTGCCGATGGT-AT
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
* ** *
95805541 CGAGGCTCCTGCGTGACCAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
** * * * *
95805584 CGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCTGGTGGTACC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCC
* *
95805626 CGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
** * * * *
95805669 CGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCTGGTGGTACC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCC
* *
95805711 CGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
** * * * *
95805754 CGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCTGGTGGTACC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCC
* *
95805796 CGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
*
95805839 CGAGGCTCCCGCAC-ATCCAAGGGCCTAGGTGCCGATGGTGGC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCC
* *
95805881 CGAGGCTCCCGCACGACCAGGGGCCTAGGTGCCGATGGT-CT
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
*
95805922 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
*
95805965 CGAGGCTCCCGCAGGACCAAGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
* *
95806008 CGAGGCTCCCGCAGGACCAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
* ** * *
95806051 CGAGGCTCTCGCAC-ATCCAAGCACCAAGGTGTCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCC
** *
95806093 CGAGGCTCCCGCACGACCAAGAACCTAGGTTCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
* * **
95806135 TGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGT-AT
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
* *
95806177 CGAGGCTCCCGCGCGACCAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
** * * *
95806220 CGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCAATGGTACC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCC
**
95806262 CGAGGCTCCCGCACGACCAAGGGGTTAGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
** * * *
95806304 CGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCAATGGTACC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCC
**
95806346 CGAGGCTCCCGCACGACCAAGGGGTTAGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
* * * * *
95806388 CGAGGCTCCCACACGACAAACGTCCTAGGTTGCCGATGGTGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
*
95806431 CAAGGCTC
1 CGAGGCTC
95806439 TAGCACGTCC
Statistics
Matches: 2276, Mismatches: 297, Indels: 110
0.85 0.11 0.04
Matches are distributed among these distances:
40 19 0.01
41 76 0.03
42 1506 0.66
43 674 0.30
44 1 0.00
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.16
Consensus pattern (42 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
Found at i:95804187 original size:84 final size:84
Alignment explanation
Indices: 95803768--95806438 Score: 2932
Period size: 85 Copynumber: 31.6 Consensus size: 84
95803758 CCCTGCTGCT
* * * * *
95803768 CGAGGCACCCGCAC-ATCCAACGTCCTAGGTTGCCGATGGTGTCCAAGGCTCCCGCAC-ATCCAA
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAA
** * * * *
95803831 GCACCAAGGTGCCAATGCTGCT
63 GGGCCTAGGTGCCGATGGTGCC
** * ** ** *
95803853 CGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCTAATACTGCTCGAGGCTCCCGCAC-ATCCAAG
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG
* *
95803916 GCACCAAGGTGCCGATGGTGCC
64 G-GCCTAGGTGCCGATGGTGCC
* * *** *
95803938 CGAGGCTCCCGCACGACCAAGGGTCGAGGTTGCCGATGGTGTTTGAGGCTCCCGTAC-ATCCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG
** *
95804002 CACCAAGGTGCCGATGGTGCC
64 GGCCTAGGTGCCGATGGTGCC
* * * * *
95804023 CGAGGTTCTCGCACGATCAA-GGCCTAGGTGCCGATGGT-CCCGAGGCTCTCACACGACCAAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
95804086 CCTAGGTTGCCGATGGTGCC
66 CCTAGG-TGCCGATGGTGCC
** *
95804106 CGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
*
95804170 GCCTAGGGGCCGATGGTGCC
65 GCCTAGGTGCCGATGGTGCC
* * * ** *
95804190 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGGCCGAAGCTCCTACATGACC-AGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* *
95804254 GTCCTAGGTGCCGATGCTGGC
65 G-CCTAGGTGCCGATGGTGCC
* * * *
95804275 CGAGGCTCCCGCACGAGCAAGCGCCTAGGTTGCCGATGGTGGCCGAGGCACCCGCACGACCAAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
*
95804340 GCCTAGGTTCCGATGGTGCC
65 GCCTAGGTGCCGATGGTGCC
* * *
95804360 CGAGGCACCCGCACGACCAAGGGCCTAGGTTCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
95804425 CCTAGGTTCCGATGGTGCC
66 CCTAGGTGCCGATGGTGCC
* * *
95804444 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
95804509 CCTAGGTTCCGATGGTGCC
66 CCTAGGTGCCGATGGTGCC
* * *
95804528 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
95804593 CCTAGGTTCCGATGGTGCC
66 CCTAGGTGCCGATGGTGCC
* * *
95804612 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
95804677 CCTAGGTTCCGATGGTGCC
66 CCTAGGTGCCGATGGTGCC
* * *
95804696 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
95804761 CCTAGGTTCCGATGGTGCC
66 CCTAGGTGCCGATGGTGCC
* * *
95804780 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* **
95804845 CCTAGGTTGCCGATAGT-AT
66 CCTAGG-TGCCGATGGTGCC
* * * ** * ** *
95804864 CGAGGCTCCCGCGCGACCAGGGGCCTAGGTTGCTGATGGT-ATCGAGGCTCCTGCGTGACCAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
95804928 GCCTAGGTTGCCGATGGTGCC
65 GCCTAGG-TGCCGATGGTGCC
** * * * * *
95804949 CGAGGCTCCCGCAC-ATCCAAGCACCAAGGTACCGGTGGTGCCCGAGGCTCTCGCACGACCAGGG
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
95805013 GCCTAGGTTGCCGATGGTGCC
65 GCCTAGG-TGCCGATGGTGCC
** * * * * *
95805034 CGAGGCTCCCGCAC-ATCCAAGCACCAAGGTACCGGTGGTGCCCGAGGCTCTCGCACGACCAGGG
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
95805098 GCCTAGGTTGCCGATGGTGCC
65 GCCTAGG-TGCCGATGGTGCC
** * * * * *
95805119 CGAGGCTCCCGCAC-ATCCAAGCACCAAGGTACCGGTGGTGCCCGAGGCTCTCGCACGACCAGGG
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
95805183 GCCTAGGTTGCCGATGGTGCC
65 GCCTAGG-TGCCGATGGTGCC
* ** * *
95805204 CGAGGCTCCCGCAC-ATCCAAGGGCCTAGGTGCCGATGGTGGCCGAGGCTCCTACATGACCAGGG
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
*
95805268 GCCTAGGTGCCGATGGT-CT
65 GCCTAGGTGCCGATGGTGCC
* *
95805287 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGGACGACCAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
95805352 GCCTAGGTTGCCGATGGTGCC
65 GCCTAGG-TGCCGATGGTGCC
* ** * * *
95805373 CGAGGCTCTCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCTCGCACGTCCAAGG
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
*
95805437 GCCTAGGTTCCGATGGTGCC
65 GCCTAGGTGCCGATGGTGCC
* * * ** * *
95805457 TGAGGCTCTCGCACGACCAAGGGCCTAGGTTACCGATGGT-ATCGAGGCTCCCGCGCGACCAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
**
95805521 GCCTAGGTTGCCGATGGT-AT
65 GCCTAGG-TGCCGATGGTGCC
* ** *
95805541 CGAGGCTCCTGCGTGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG
** * * * *
95805605 CACCAAGGTGCTGGTGGTACC
64 GGCCTAGGTGCCGATGGTGCC
* *
95805626 CGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG
** * * * *
95805690 CACCAAGGTGCTGGTGGTACC
64 GGCCTAGGTGCCGATGGTGCC
* *
95805711 CGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG
** * * * *
95805775 CACCAAGGTGCTGGTGGTACC
64 GGCCTAGGTGCCGATGGTGCC
* *
95805796 CGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG
*
95805860 GGCCTAGGTGCCGATGGTGGC
64 GGCCTAGGTGCCGATGGTGCC
* * *
95805881 CGAGGCTCCCGCACGACCAGGGGCCTAGGTGCCGATGGT-CTCGAGGCTCTCGCACGACCAAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
95805945 CCTAGGTTGCCGATGGTGCC
66 CCTAGG-TGCCGATGGTGCC
* * *
95805965 CGAGGCTCCCGCAGGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAGGACCAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
95806030 GCCTAGGTTGCCGATGGTGCC
65 GCCTAGG-TGCCGATGGTGCC
* ** * * *
95806051 CGAGGCTCTCGCAC-ATCCAAGCACCAAGGTGTCGATGGTGCCCGAGGCTCCCGCACGACCAAGA
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* *
95806115 ACCTAGGTTCCGATGGTGCC
65 GCCTAGGTGCCGATGGTGCC
* * ** * *
95806135 TGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGT-ATCGAGGCTCCCGCGCGACCAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
95806199 GCCTAGGTTGCCGATGGTGCC
65 GCCTAGG-TGCCGATGGTGCC
** * * *
95806220 CGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCAATGGTACCCGAGGCTCCCGCACGACCAAGG
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
**
95806284 GGTTAGGTGCCGATGGTGCC
65 GCCTAGGTGCCGATGGTGCC
** * * *
95806304 CGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCAATGGTACCCGAGGCTCCCGCACGACCAAGG
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
**
95806368 GGTTAGGTGCCGATGGTGCC
65 GCCTAGGTGCCGATGGTGCC
* * * * * *
95806388 CGAGGCTCCCACACGACAAACGTCCTAGGTTGCCGATGGTGTCCAAGGCTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTC
95806439 TAGCACGTCC
Statistics
Matches: 2306, Mismatches: 240, Indels: 80
0.88 0.09 0.03
Matches are distributed among these distances:
82 21 0.01
83 94 0.04
84 999 0.43
85 1073 0.47
86 119 0.05
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.16
Consensus pattern (84 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
CCTAGGTGCCGATGGTGCC
Found at i:95806678 original size:24 final size:24
Alignment explanation
Indices: 95806625--95806678 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
95806615 TTTCGATATT
* *
95806625 CTGGGATGGCTCGCCGGAGCACCA
1 CTGGGATGGATCACCGGAGCACCA
* *
95806649 CCGGGATGGATCACCGGAGCACCG
1 CTGGGATGGATCACCGGAGCACCA
95806673 CTGGGA
1 CTGGGA
95806679 ACCAAACCGG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.19, C:0.31, G:0.39, T:0.11
Consensus pattern (24 bp):
CTGGGATGGATCACCGGAGCACCA
Found at i:95807170 original size:58 final size:59
Alignment explanation
Indices: 95807073--95807193 Score: 156
Period size: 58 Copynumber: 2.1 Consensus size: 59
95807063 GGGAGGGACA
*
95807073 GGGACGATTCATTCATTGTTGGGAACCAGACATACAACGGTATCCGAATCCTACC-TTT
1 GGGACGATTCATTCATTATTGGGAACCAGACATACAACGGTATCCGAATCCTACCTTTT
* * * ** *
95807131 GGGACGTTTCATTCATTATTGGGTA-CTGAACATGTAACGGTATCCGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTGGGAACCAG-ACATACAACGGTATCCGAATCCTACCTTTT
95807190 GGGA
1 GGGA
95807194 TTGGAGAGGG
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
57 2 0.04
58 45 0.83
59 7 0.13
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGAACCAGACATACAACGGTATCCGAATCCTACCTTTT
Found at i:95817385 original size:294 final size:294
Alignment explanation
Indices: 95816856--95817441 Score: 1093
Period size: 294 Copynumber: 2.0 Consensus size: 294
95816846 AGACTCGATG
*
95816856 GTTCACGGGATTCTGTAATTCACACCAAGTATCCAATTTCGCTACGTTCTTCATCGATGCGAGAG
1 GTTCACGGGATTCTGTAATTCACACCAAGTATCCAATTTCGATACGTTCTTCATCGATGCGAGAG
95816921 CCGAGATATCCGTTGCCGAGAGTCGTTCTATATACTTTGCGACAAAAGAACAACATCACTGAAGC
66 CCGAGATATCCGTTGCCGAGAGTCGTTCTATATACTTTGCGACAAAAGAACAACATCACTGAAGC
95816986 ACTGACACCGCGAACGGTGCGGCGACAAGAGATGTGTCCCTTTTTTCATTTCGATTCCTTGGCGC
131 ACTGACACCGCGAACGGTGCGGCGACAAGAGATGTGTCCCTTTTTTCATTTCGATTCCTTGGCGC
95817051 GATTCGCGCCGGGGGTTTGTTCATTTTGCATCGAAGAAGTTGATCCTAACATCTCACCCCACCCA
196 GATTCGCGCCGGGGGTTTGTTCATTTTGCATCGAAGAAGTTGATCCTAACATCTCACCCCACCCA
* *
95817116 ATGGGAAAAAGGGATGACAAGACCGGCCGCTCTT
261 ATGGGAAAAAGGGATAACAAAACCGGCCGCTCTT
*
95817150 GTTCACGGGATTCTGTAATTCACACCAAGTATTGC-ATTTCGATACGTTCTTCATCGATGCGAGA
1 GTTCACGGGATTCTGTAATTCACACCAAGTA-TCCAATTTCGATACGTTCTTCATCGATGCGAGA
*
95817214 GCCGAGATATCTGTTGCCGAGAGTCGTTCTATATACTTTGCGACAAAAGAACAACATCACTGAAG
65 GCCGAGATATCCGTTGCCGAGAGTCGTTCTATATACTTTGCGACAAAAGAACAACATCACTGAAG
95817279 CACTGACACCGCGAACGGTGCGGCGACAAGAGATGTGTCCCTTTTTTCATTTCGATTCCTTGGCG
130 CACTGACACCGCGAACGGTGCGGCGACAAGAGATGTGTCCCTTTTTTCATTTCGATTCCTTGGCG
*
95817344 CGATTCGCGCCGGGGGTTTGTTCATTTTGCATCGAAGAAGTTGATCCTGACATCTCACCCCACCC
195 CGATTCGCGCCGGGGGTTTGTTCATTTTGCATCGAAGAAGTTGATCCTAACATCTCACCCCACCC
*
95817409 AATGGGCAAAAGGGATAACAAAACCGGCCGCTC
260 AATGGGAAAAAGGGATAACAAAACCGGCCGCTC
95817442 CGACACGCGG
Statistics
Matches: 284, Mismatches: 7, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
294 282 0.99
295 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (294 bp):
GTTCACGGGATTCTGTAATTCACACCAAGTATCCAATTTCGATACGTTCTTCATCGATGCGAGAG
CCGAGATATCCGTTGCCGAGAGTCGTTCTATATACTTTGCGACAAAAGAACAACATCACTGAAGC
ACTGACACCGCGAACGGTGCGGCGACAAGAGATGTGTCCCTTTTTTCATTTCGATTCCTTGGCGC
GATTCGCGCCGGGGGTTTGTTCATTTTGCATCGAAGAAGTTGATCCTAACATCTCACCCCACCCA
ATGGGAAAAAGGGATAACAAAACCGGCCGCTCTT
Found at i:95825772 original size:40 final size:40
Alignment explanation
Indices: 95825710--95825966 Score: 333
Period size: 40 Copynumber: 6.5 Consensus size: 40
95825700 AAGCCAAGTA
* * ***
95825710 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTTGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
95825749 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
95825789 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
95825829 CCTTCGGGAGTTAG-CCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
95825868 CCTTCGGGACTTAGCCCGGGTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * * *
95825908 CCTTCGGCACTTAGCCC-GAAACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
95825948 CCTTCGGGTCTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
95825967 TTATCATCCA
Statistics
Matches: 194, Mismatches: 19, Indels: 8
0.88 0.09 0.04
Matches are distributed among these distances:
39 52 0.27
40 141 0.73
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:95825861 original size:79 final size:79
Alignment explanation
Indices: 95825710--95825966 Score: 329
Period size: 79 Copynumber: 3.2 Consensus size: 79
95825700 AAGCCAAGTA
* * *** *
95825710 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTTGAATGCCTTCGGGACATAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAG-CCGGATATA
*
95825773 GTAACTCGCACCAATG
64 GTAACTCGCACAAATG
*
95825789 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAGTTAGCCGGATATAGT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCGGATATAGT
95825854 AACTCGCACAAATG
66 AACTCGCACAAATG
* * * *
95825868 CCTTCGGGACTTAGCCCGGGTATAGTAACTCGCACAAATGCCTTCGGCACTTAGCCCGAAACTAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCGGATA-TAG
* * *
95825933 TCACTAGCGCAAATG
65 TAACTCGCACAAATG
*
95825948 CCTTCGGGTCTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
95825967 TTATCATCCA
Statistics
Matches: 158, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
79 93 0.59
80 65 0.41
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCGGATATAGT
AACTCGCACAAATG
Found at i:95825921 original size:119 final size:119
Alignment explanation
Indices: 95825710--95825955 Score: 343
Period size: 119 Copynumber: 2.1 Consensus size: 119
95825700 AAGCCAAGTA
* ***
95825710 CCTTCGGGATTTAACCGGATATAGCTACTCGCTTGAATGCCTTCGGGACATAGCCCGGATATAGT
1 CCTTCGGGAGTTAACCGGATATAGCTACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAGT
* * * *
95825775 AACTCGCACCAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
66 AACTCGCACAAATGCCTTCGGCACTTAGCCC-GAAACTAGTAACTAGCACAAATG
* * *
95825829 CCTTCGGGAGTTAGCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG
1 CCTTCGGGAGTTAACCGGATATAGCT-ACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAG
* *
95825893 TAACTCGCACAAATGCCTTCGGCACTTAGCCCGAAACTAGTCACTAGCGCAAATG
65 TAACTCGCACAAATGCCTTCGGCACTTAGCCCGAAACTAGTAACTAGCACAAATG
95825948 CCTTCGGG
1 CCTTCGGG
95825956 TCTTAGCCCG
Statistics
Matches: 112, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
118 4 0.04
119 108 0.96
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.23
Consensus pattern (119 bp):
CCTTCGGGAGTTAACCGGATATAGCTACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAGT
AACTCGCACAAATGCCTTCGGCACTTAGCCCGAAACTAGTAACTAGCACAAATG
Found at i:95833754 original size:40 final size:40
Alignment explanation
Indices: 95833675--95834558 Score: 1673
Period size: 40 Copynumber: 22.1 Consensus size: 40
95833665 CGGGATTTAA
* * *
95833675 CCGGATATAGCT-ACTCGCTC-AATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCAGGACTTAGC
* *
95833714 CCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
95833754 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
95833794 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
95833834 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
95833874 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
95833914 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
95833954 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
95833994 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
95834034 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
95834074 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
95834114 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
95834154 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
95834194 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
95834234 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
95834274 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
95834314 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
95834354 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
95834394 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
* *
95834434 CCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
95834474 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
*
95834514 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
95834554 CCGGA
1 CCGGA
95834559 ACTAGTCACN
Statistics
Matches: 834, Mismatches: 9, Indels: 3
0.99 0.01 0.00
Matches are distributed among these distances:
38 1 0.00
39 17 0.02
40 816 0.98
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
Found at i:95838370 original size:85 final size:85
Alignment explanation
Indices: 95837100--95838497 Score: 2023
Period size: 85 Copynumber: 16.4 Consensus size: 85
95837090 CCCCTGCTGC
* * * * * *
95837100 TCGAGGCACCCGCACATCCAA-CGTCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCA
1 TCGAGGCTCCCGCACATCAAAGC-ACCAAGG-TGCCGATGGTGCCCGAGGTTCCCGCACGA-CCA
** ** * * *
95837163 AGCACCAAGG-TGCCAATGCTGC
63 AGGGCTGAGGTTGCCGATGGTGT
95837185 TCGAGGCTCCCGCACATCAAAGGCACCAAGGTGCCGATGGTGCCCGAGGTTCCCGCACGACCAAG
1 TCGAGGCTCCCGCACATCAAA-GCACCAAGGTGCCGATGGTGCCCGAGGTTCCCGCACGACCAAG
95837250 GGCTGAGGTTGCCGATGGTGT
65 GGCTGAGGTTGCCGATGGTGT
* *
95837271 TCGAGGCTCCCGCACATCAAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCTCGCACGATCAAGG
1 TCGAGGCTCCCGCACATCAAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCCCGCACGACCAAGG
*
95837336 CCT-AGGTTGCCCGATGGTGT
66 GCTGAGGTTG-CCGATGGTGT
95837356 TCGAGGCTCCCGCACATCAAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCCCGCACGACCAAGG
1 TCGAGGCTCCCGCACATCAAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCCCGCACGACCAAGG
95837421 GCTGAGGTTGCCGATGGTGT
66 GCTGAGGTTGCCGATGGTGT
95837441 TCGAGGCTCCCGCACATCAAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCCCGCACGACCAAGG
1 TCGAGGCTCCCGCACATCAAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCCCGCACGACCAAGG
95837506 GCTGAGGTTGCCGATGGTGT
66 GCTGAGGTTGCCGATGGTGT
95837526 TCGAGGCTCCCGCACATCAAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCCCGCACGACCAAGG
1 TCGAGGCTCCCGCACATCAAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCCCGCACGACCAAGG
95837591 GCTGAGGTTGCCGATGGTGT
66 GCTGAGGTTGCCGATGGTGT
95837611 TCGAGGCTCCCGCACATCAAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCCCGCACGACCAAGG
1 TCGAGGCTCCCGCACATCAAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCCCGCACGACCAAGG
95837676 GCTGAGGTTGCCGATGGTGT
66 GCTGAGGTTGCCGATGGTGT
95837696 TCGAGGCTCCCGCACATCAAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCCCGCACGACCAAGG
1 TCGAGGCTCCCGCACATCAAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCCCGCACGACCAAGG
95837761 GCTGAGGTTGCCGATGGTGT
66 GCTGAGGTTGCCGATGGTGT
95837781 TCGAGGCTCCCGCACATCAAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCCCGCACGACCAAGG
1 TCGAGGCTCCCGCACATCAAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCCCGCACGACCAAGG
95837846 GCTGAGGTTGCCGATGGTGT
66 GCTGAGGTTGCCGATGGTGT
95837866 TCGAGGCTCCCGCACATCAAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCCCGCACGACCAAGG
1 TCGAGGCTCCCGCACATCAAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCCCGCACGACCAAGG
95837931 GCTGAGGTTGCCGATGGTGT
66 GCTGAGGTTGCCGATGGTGT
95837951 TCGAGGCTCCCGCACATCAAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCCCGCACGACCAAGG
1 TCGAGGCTCCCGCACATCAAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCCCGCACGACCAAGG
95838016 GCTGAGGTTGCCGATGGTGT
66 GCTGAGGTTGCCGATGGTGT
95838036 TCGAGGCTCCCGCACATCAAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCCCGCACGACCAAGG
1 TCGAGGCTCCCGCACATCAAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCCCGCACGACCAAGG
95838101 GCTGAGGTTGCCGATGGTGT
66 GCTGAGGTTGCCGATGGTGT
* *
95838121 TCGAGGCTCCCGCACATCAAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCTCGCACGATCAAGG
1 TCGAGGCTCCCGCACATCAAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCCCGCACGACCAAGG
* *
95838186 CCT-AGGTTGCCGATGGTGC
66 GCTGAGGTTGCCGATGGTGT
* * * * ** * * * *
95838205 CCGAGGCTCTCGCACGA-CCAGGGGCCTAGGTTGCCGATGGTGCCCAAGGCTCTCGCAC-ATCCA
1 TCGAGGCTCCCGCAC-ATCAAAGCACCAAGG-TGCCGATGGTGCCCGAGGTTCCCGCACGA-CCA
* *
95838268 AGGGCCT-AGG-TGTCGATGGTGG
63 AGGG-CTGAGGTTGCCGATGGTGT
* * ** * * *
95838290 CCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAG
1 TCGAGGCTCCCGCAC-ATCAAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCCCGCACGACCAAG
*
95838354 GGCCT-AGGTTGCCGATGGT-A
65 GG-CTGAGGTTGCCGATGGTGT
* ** * * ** * * *
95838374 TCGAGGTTCCCGTGCGA-CCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACAAA
1 TCGAGGCTCCCGCAC-ATCAAAGCACCAAGG-TGCCGATGGTGCCCGAGGTTCCCGCACGACCAA
** *
95838438 CGTCCT-AGGTTGCCGATGGCGT
64 -GGGCTGAGGTTGCCGATGGTGT
* * * * * * * *
95838460 CCAAGGCTCCAGCACGTCCAAGTAGCAATGTGCCGATG
1 TCGAGGCTCCCGCACATCAAAGCACCAAGGTGCCGATG
95838498 CTCCCGCACC
Statistics
Matches: 1232, Mismatches: 65, Indels: 32
0.93 0.05 0.02
Matches are distributed among these distances:
84 107 0.09
85 1060 0.86
86 64 0.05
87 1 0.00
ACGTcount: A:0.20, C:0.31, G:0.32, T:0.17
Consensus pattern (85 bp):
TCGAGGCTCCCGCACATCAAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCCCGCACGACCAAGG
GCTGAGGTTGCCGATGGTGT
Found at i:95846419 original size:51 final size:51
Alignment explanation
Indices: 95846343--95846447 Score: 174
Period size: 51 Copynumber: 2.1 Consensus size: 51
95846333 AATACGATTA
* * *
95846343 TTCCTGCTATTCCAGATGTTCCACAAGACAGTAATGAAGTCGGACAGGGCC
1 TTCCTGCTATTCCAAATGTTCCACAAGACAATAATGAAGTCAGACAGGGCC
*
95846394 TTCCTGCTGTTCCAAATGTTCCACAAGACAATAATGAAGTCAGACAGGGCC
1 TTCCTGCTATTCCAAATGTTCCACAAGACAATAATGAAGTCAGACAGGGCC
95846445 TTC
1 TTC
95846448 TTATCCAACA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.25
Consensus pattern (51 bp):
TTCCTGCTATTCCAAATGTTCCACAAGACAATAATGAAGTCAGACAGGGCC
Found at i:95853778 original size:58 final size:59
Alignment explanation
Indices: 95853687--95853807 Score: 181
Period size: 58 Copynumber: 2.1 Consensus size: 59
95853677 GGGAGGGACA
* * *
95853687 GGGACGATTCATTCATTGTTGGGTACTGGACATGCAACGGTATCCGAATCCTACC-TTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
* * *
95853745 GGGACGATTCATTCATTATTGGGTACCGAACATGTAACGGTATCTGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
95853804 GGGA
1 GGGA
95853808 TTGGGGAGGG
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
58 49 0.88
59 7 0.12
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
Found at i:95853882 original size:24 final size:24
Alignment explanation
Indices: 95853842--95853894 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
95853832 TTGTGTATCT
* * *
95853842 CGGGATGGCTCGCCGGATCATCAC
1 CGGGATGGATCGCCGGAGCACCAC
*
95853866 CGGGATGGATCGTCGGAGCACCAC
1 CGGGATGGATCGCCGGAGCACCAC
95853890 CGGGA
1 CGGGA
95853895 ACCTAACCGG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.19, C:0.30, G:0.38, T:0.13
Consensus pattern (24 bp):
CGGGATGGATCGCCGGAGCACCAC
Found at i:95861255 original size:150 final size:150
Alignment explanation
Indices: 95860984--95861277 Score: 579
Period size: 150 Copynumber: 2.0 Consensus size: 150
95860974 CTGCCAATAC
95860984 ACACAACCAAAACACCACTCATATGCCCATTGCGTACCAGTGGTAGCACCCACACACACCGGCTA
1 ACACAACCAAAACACCACTCATATGCCCATTGCGTACCAGTGGTAGCACCCACACACACCGGCTA
95861049 ACAACCCACCCAACCAATGTATTGGTAGGGGAGCGGAAGGAACAATGAAACGAGGGCACACCACA
66 ACAACCCACCCAACCAATGTATTGGTAGGGGAGCGGAAGGAACAATGAAACGAGGGCACACCACA
95861114 AACGCTTGGCACAAGAACTA
131 AACGCTTGGCACAAGAACTA
95861134 ACACAACCAAAACACCACTCATATGCCCATTGCGTACCAGTGGTAGCACCCACACACACCGGCTA
1 ACACAACCAAAACACCACTCATATGCCCATTGCGTACCAGTGGTAGCACCCACACACACCGGCTA
*
95861199 ACAACCCACCCAACCAATGTATTGGTAGGGGAGCGGAAGGAACAATGAAACGAGGGCACACCTCA
66 ACAACCCACCCAACCAATGTATTGGTAGGGGAGCGGAAGGAACAATGAAACGAGGGCACACCACA
95861264 AACGCTTGGCACAA
131 AACGCTTGGCACAA
95861278 AATCTACGAG
Statistics
Matches: 143, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 143 1.00
ACGTcount: A:0.36, C:0.32, G:0.20, T:0.12
Consensus pattern (150 bp):
ACACAACCAAAACACCACTCATATGCCCATTGCGTACCAGTGGTAGCACCCACACACACCGGCTA
ACAACCCACCCAACCAATGTATTGGTAGGGGAGCGGAAGGAACAATGAAACGAGGGCACACCACA
AACGCTTGGCACAAGAACTA
Found at i:95861975 original size:42 final size:43
Alignment explanation
Indices: 95861842--95861983 Score: 121
Period size: 43 Copynumber: 3.3 Consensus size: 43
95861832 TTTTCTTTAG
* * **
95861842 CCCGCACATCCGAGCCACCAGGGTGCCCCTGCTGCTCGAGGCT
1 CCCGCACATCCAAGCCACCAAGGTGCCAATGCTGCTCGAGGCT
* * * ** * * *
95861885 CCCGCTCATCCAACGTC-CTAA-GTTACAGATGGTG-TCCGAAGAT
1 CCCGCACATCCAA-GCCACCAAGGTGCCA-ATGCTGCT-CGAGGCT
95861928 CCCGCACATCCAAG-CACCAAGGTGCCAATGCTGCTCGAGGCT
1 CCCGCACATCCAAGCCACCAAGGTGCCAATGCTGCTCGAGGCT
95861970 CCCGCACATCCAAG
1 CCCGCACATCCAAG
95861984 NNNNNNNNNN
Statistics
Matches: 74, Mismatches: 19, Indels: 13
0.70 0.18 0.12
Matches are distributed among these distances:
41 1 0.01
42 32 0.43
43 39 0.53
44 2 0.03
ACGTcount: A:0.22, C:0.39, G:0.23, T:0.16
Consensus pattern (43 bp):
CCCGCACATCCAAGCCACCAAGGTGCCAATGCTGCTCGAGGCT
Found at i:95876870 original size:42 final size:42
Alignment explanation
Indices: 95876824--95877018 Score: 144
Period size: 42 Copynumber: 4.6 Consensus size: 42
95876814 CGATGGTGCC
* *
95876824 CGAGGCTCTCGTACGACCAAGGGCCTAGGTTGCAGATGGTAT
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCAGATGGTAT
* * **
95876866 CGAGGCTCCCGCGCGACCAAGGGCCTAGGTTGCCGATGGTGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCAGATGGTAT
* * *** * * * **
95876908 CCAGGGCTCCCGCAC-ATCAATCACCAAGG-TGCCGGTGGTGCC
1 CGA-GGCTCCCGCACGACCAAGGGCCTAGGTTGCAGATGGT-AT
* * * **
95876950 CGAGGCTCCCGCACGACCAAGGGGCGAGG-TGCCGATGGTGGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCAGATGGT-AT
*
95876992 CGAGGCCCCCGCACGACCAAGGGCCTA
1 CGAGGCTCCCGCACGACCAAGGGCCTA
95877019 TTTTGCCGCC
Statistics
Matches: 123, Mismatches: 27, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
41 20 0.16
42 93 0.76
43 10 0.08
ACGTcount: A:0.18, C:0.33, G:0.35, T:0.13
Consensus pattern (42 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCAGATGGTAT
Found at i:95882137 original size:35 final size:35
Alignment explanation
Indices: 95882098--95882169 Score: 108
Period size: 35 Copynumber: 2.1 Consensus size: 35
95882088 CATCTCCGGA
*
95882098 GCTTGGAAAATATGGAAAGTAATCTTCAAAGATAT
1 GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
* * *
95882133 GCTTGGCAAATATGGAAGGGGATCTTCAAAGATAT
1 GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
95882168 GC
1 GC
95882170 GATCCCAGAC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.38, C:0.11, G:0.25, T:0.26
Consensus pattern (35 bp):
GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
Found at i:95882534 original size:49 final size:49
Alignment explanation
Indices: 95882481--95882576 Score: 149
Period size: 48 Copynumber: 2.0 Consensus size: 49
95882471 GTTCCATTGA
95882481 ATCCTCAAATTGTTGCGAGACAGGCTGACTTAGGC-GTTTTGAGCGAAGG
1 ATCCT-AAATTGTTGCGAGACAGGCTGACTTAGGCAGTTTTGAGCGAAGG
* * *
95882530 ATCCTTAATTGTTGCGAGATAGGCTGACTTAGGCATTTTTGAGCGAA
1 ATCCTAAATTGTTGCGAGACAGGCTGACTTAGGCAGTTTTGAGCGAA
95882577 AGAACGCTTG
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
48 27 0.63
49 16 0.37
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (49 bp):
ATCCTAAATTGTTGCGAGACAGGCTGACTTAGGCAGTTTTGAGCGAAGG
Found at i:95882933 original size:24 final size:24
Alignment explanation
Indices: 95882898--95882949 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
95882888 TCAATATTCT
*
95882898 GGGATGGCTCGCCGGAGCACCGCC
1 GGGATGGATCGCCGGAGCACCGCC
95882922 GGGATGGATCGCCGGAGCACCGCC
1 GGGATGGATCGCCGGAGCACCGCC
95882946 GGGA
1 GGGA
95882950 ACCTAACCGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.15, C:0.33, G:0.44, T:0.08
Consensus pattern (24 bp):
GGGATGGATCGCCGGAGCACCGCC
Found at i:95893096 original size:35 final size:35
Alignment explanation
Indices: 95893045--95893114 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
95893035 CCCGTGAGGG
* *
95893045 ATCCTGCCAATCAGCTTCCTTGTGCCTTACGGGTT
1 ATCCCGCCAATCAGCTTCCTTGCGCCTTACGGGTT
95893080 ATCCCGCCAATCAGCTTCCTTGCGCCTTACGGGTT
1 ATCCCGCCAATCAGCTTCCTTGCGCCTTACGGGTT
95893115 TTCTAGCCCG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.14, C:0.34, G:0.20, T:0.31
Consensus pattern (35 bp):
ATCCCGCCAATCAGCTTCCTTGCGCCTTACGGGTT
Found at i:95897469 original size:48 final size:48
Alignment explanation
Indices: 95897392--95897489 Score: 169
Period size: 48 Copynumber: 2.0 Consensus size: 48
95897382 CATGCCCCGT
* *
95897392 GAGCTACGAAGAGGTCATAACAGAGCACGAGCATCGTCCGTGTCAAGA
1 GAGCAACGAAGAGGCCATAACAGAGCACGAGCATCGTCCGTGTCAAGA
*
95897440 GAGCAACGAAGAGGCCATAACAGATCACGAGCATCGTCCGTGTCAAGA
1 GAGCAACGAAGAGGCCATAACAGAGCACGAGCATCGTCCGTGTCAAGA
95897488 GA
1 GA
95897490 CAAAATGCAT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.35, C:0.23, G:0.29, T:0.13
Consensus pattern (48 bp):
GAGCAACGAAGAGGCCATAACAGAGCACGAGCATCGTCCGTGTCAAGA
Found at i:95898260 original size:76 final size:77
Alignment explanation
Indices: 95898131--95898283 Score: 211
Period size: 76 Copynumber: 2.0 Consensus size: 77
95898121 GTGTGGTCGC
* * *
95898131 CGACTTGGGATGCACAAGGCATCCCTAAACGTGACGGGGGCAAAACGGCAAGCCAAGCTCGAGCC
1 CGACTTGGAAGGCACAAGGCATCCCTAAACATGACGGGGGCAAAACGGCAAGCCAAGCTCGAGCC
95898196 CATAGCAATGCA
66 CATAGCAATGCA
* * ** *
95898208 CGACTTGGAAGGCACAAGGCGT-CCTTAACATGACGGGGG-AGAATGGGCAAGCCAAGCTCTAGC
1 CGACTTGGAAGGCACAAGGCATCCCTAAACATGACGGGGGCA-AAACGGCAAGCCAAGCTCGAGC
95898271 CCATAGCAATGCA
65 CCATAGCAATGCA
95898284 TAACCCACCC
Statistics
Matches: 67, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
75 1 0.01
76 47 0.70
77 19 0.28
ACGTcount: A:0.31, C:0.27, G:0.29, T:0.13
Consensus pattern (77 bp):
CGACTTGGAAGGCACAAGGCATCCCTAAACATGACGGGGGCAAAACGGCAAGCCAAGCTCGAGCC
CATAGCAATGCA
Done.