Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 35 of 313
Found at i:11803452 original size:31 final size:31
Alignment explanation
Indices: 11803392--11803453 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
11803382 GATCTTTGAG
** *
11803392 ATTGTGCATAGATTACGGACAACTGAACAAT
1 ATTGTGCATAGATTACAAACAACTAAACAAT
*
11803423 ATTGTGCATAGATTACAAACAGCTAAACAAT
1 ATTGTGCATAGATTACAAACAACTAAACAAT
11803454 GTCACAATCA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.42, C:0.16, G:0.16, T:0.26
Consensus pattern (31 bp):
ATTGTGCATAGATTACAAACAACTAAACAAT
Found at i:11806898 original size:93 final size:92
Alignment explanation
Indices: 11806739--11806920 Score: 244
Period size: 93 Copynumber: 2.0 Consensus size: 92
11806729 GTGTATGCTA
* * * * *
11806739 GTGTAAGACCTGTCTGGGACATGGCATCGGCCTCAAGATATGCAAGCTAGTGTAAGACCTATCTG
1 GTGTAAAACCTATCTGGGACATGGCATCGGACACAAGATATGCAAGCCAGTGTAAGACCTATCTG
*
11806804 GGACATGGCATCGGCTTGAGGTGTGTCT
66 GGACATGGCATCGACTT-AGGTGTGTCT
*
11806832 GTGTAAAACCTATCTGGGACATGGCATC-GACAC-AGATGA-GCTAGAGCCAGTGTAAGACCTGT
1 GTGTAAAACCTATCTGGGACATGGCATCGGACACAAGAT-ATGC-A-AGCCAGTGTAAGACCTAT
11806894 CTGGGACATGGCATCGACTTAGGTGTG
63 CTGGGACATGGCATCGACTTAGGTGTG
11806921 AGAGCCAGTG
Statistics
Matches: 79, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
91 6 0.08
92 12 0.15
93 61 0.77
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.24
Consensus pattern (92 bp):
GTGTAAAACCTATCTGGGACATGGCATCGGACACAAGATATGCAAGCCAGTGTAAGACCTATCTG
GGACATGGCATCGACTTAGGTGTGTCT
Found at i:11806910 original size:49 final size:48
Alignment explanation
Indices: 11806738--11806960 Score: 172
Period size: 49 Copynumber: 4.7 Consensus size: 48
11806728 TGTGTATGCT
* * *
11806738 AGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCAAGAT-ATGCA-AGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATC-GACAC-AGATGA-GCAGAGCC
* * * ** * *
11806787 AGTGTAAGACCTATCTGGGACATGGCATCG--GC--TTGAGGTGTGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACACAGATGAGCAGAGCC
* * *
11806831 TGTGTAAAACCTATCTGGGACATGGCATCGACACAGATGAGCTAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACACAGATGAGC-AGAGCC
** * *
11806880 AGTGTAAGACCTGTCTGGGACATGGCATCGACTTAGGTGTG-AGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACACAGATGAGCAGAGCC
* * *
11806927 AGTGTAAGACCATGTTTGGAACATGGCTTCGACA
1 AGTGTAAGACC-TGTCTGGGACATGGCATCGACA
11806961 TCGTACCCTA
Statistics
Matches: 139, Mismatches: 27, Indels: 17
0.76 0.15 0.09
Matches are distributed among these distances:
43 2 0.01
44 30 0.22
46 2 0.01
47 17 0.12
48 23 0.17
49 65 0.47
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACACAGATGAGCAGAGCC
Found at i:11809839 original size:64 final size:64
Alignment explanation
Indices: 11809758--11809941 Score: 187
Period size: 67 Copynumber: 2.8 Consensus size: 64
11809748 AAACACTATG
* *
11809758 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
11809822 ATGTAGCTAGGTCGCATGCGTGGCT-CCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 ATGTAGCTAGGTCGCATGGGT-GATACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
11809886 TAA
62 TAA
* * * *
11809889 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAG-ACAAGAGAGC
11809942 CGAACTCTAT
Statistics
Matches: 98, Mismatches: 15, Indels: 15
0.77 0.12 0.12
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 23 0.23
65 4 0.04
66 18 0.18
67 33 0.34
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:11813166 original size:30 final size:30
Alignment explanation
Indices: 11813132--11813192 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
11813122 TCGTTAACTC
11813132 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
11813162 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
11813192 A
1 A
11813193 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:11816729 original size:39 final size:39
Alignment explanation
Indices: 11816634--11816973 Score: 440
Period size: 39 Copynumber: 8.6 Consensus size: 39
11816624 TTGAATGATG
*
11816634 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
11816672 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
*
11816713 TCCAGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
11816752 TTCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
11816791 TCCGGGCTAAGCCCGAAGGTATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
11816830 TCCAGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
11816869 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
11816908 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
11816947 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
11816974 AATGAGGAGC
Statistics
Matches: 270, Mismatches: 24, Indels: 13
0.88 0.08 0.04
Matches are distributed among these distances:
39 201 0.74
40 57 0.21
41 11 0.04
42 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:11816995 original size:79 final size:79
Alignment explanation
Indices: 11816686--11817006 Score: 332
Period size: 78 Copynumber: 4.1 Consensus size: 79
11816676 GGACTAAGAT
* * **
11816686 CCGAAGGCATTTGTGCGAGATACTAATTCCAGGCTAAGCCCGAAGGCATTTGTGCGAGAT-ACTA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAG-TGACTA
* * *
11816750 ATTTCGGGCTAAG-C
65 AATCCGGGTTAAGTC
* * ** *
11816764 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGTATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
* * *
11816829 TTCCAGGCTAAG-C
66 ATCCGGGTTAAGTC
* ** *
11816842 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
11816907 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
11816921 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAATGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* * *
11816983 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAGTC
11817000 CCGAAGG
1 CCGAAGG
11817007 TACGTGATTT
Statistics
Matches: 220, Mismatches: 17, Indels: 11
0.89 0.07 0.04
Matches are distributed among these distances:
77 1 0.00
78 148 0.67
79 47 0.21
80 24 0.11
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAGTC
Found at i:11822270 original size:15 final size:14
Alignment explanation
Indices: 11822226--11822270 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
11822216 ATCCTGGGAT
11822226 ATTAA-AACAAG-A
1 ATTAAGAACAAGTA
11822238 ATTAAGAACACA-TA
1 ATTAAGAACA-AGTA
11822252 ATTAAGAACAAGTTA
1 ATTAAGAACAAG-TA
11822267 ATTA
1 ATTA
11822271 TTTATCATAC
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
12 5 0.18
13 5 0.18
14 12 0.43
15 6 0.21
ACGTcount: A:0.58, C:0.09, G:0.09, T:0.24
Consensus pattern (14 bp):
ATTAAGAACAAGTA
Found at i:11826741 original size:16 final size:16
Alignment explanation
Indices: 11826722--11826752 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
11826712 CTTCTTCACT
11826722 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
11826738 TACTTACTTACTTAA
1 TACTCACTTACTTAA
11826753 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:11826758 original size:20 final size:20
Alignment explanation
Indices: 11826719--11826758 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
11826709 AAACTTCTTC
* *
11826719 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
11826739 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
11826759 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:11827018 original size:49 final size:52
Alignment explanation
Indices: 11826942--11827090 Score: 187
Period size: 49 Copynumber: 2.9 Consensus size: 52
11826932 ATAAGCGAGT
* **
11826942 ACCTTACCATTGCCATGACTTGTCATGGTCTTATGTGGTATCCTT-TT-GAA
1 ACCTTACCATTGCCATGACTTGACATGGTCTTACATGGTATCCTTCTTAGAA
* *
11826992 A-CTTACCATTGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAA
1 ACCTTACCATTGCCATGACTTGACATGGTCTTACATGGTATCCTT--CTTAGAA
* *
11827045 ACCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 ACCTTACC-ATTGCCATGACTTGACATGGTCTTACATGGTATCCTT
11827091 AAACCCTAAT
Statistics
Matches: 85, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
49 38 0.45
50 1 0.01
52 2 0.02
53 4 0.05
54 6 0.07
55 34 0.40
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.37
Consensus pattern (52 bp):
ACCTTACCATTGCCATGACTTGACATGGTCTTACATGGTATCCTTCTTAGAA
Found at i:11827219 original size:134 final size:134
Alignment explanation
Indices: 11827031--11827297 Score: 516
Period size: 134 Copynumber: 2.0 Consensus size: 134
11827021 TTACATGATA
11827031 TCCTTGCCTTAGAAACCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTTAAACC
1 TCCTTGCCTTAGAAACCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTTAAACC
11827096 CTAATGTCATGACATTTGTATCCTACACATTCCTAATGTTCAATCGGGACTTTCTGAAATTACTT
66 CTAATGTCATGACATTTGTATCCTACACATTCCTAATGTTCAATCGGGACTTTCTGAAATTACTT
11827161 CTCT
131 CTCT
* *
11827165 TCCTTTCCTTAGAAACCTTACCAATTTCCATGCCTTGGCATGGTCTTACATGGTATCCTTAAACC
1 TCCTTGCCTTAGAAACCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTTAAACC
11827230 CTAATGTCATGACATTTGTATCCTACACATTCCTAATGTTCAATCGGGACTTTCTGAAATTACTT
66 CTAATGTCATGACATTTGTATCCTACACATTCCTAATGTTCAATCGGGACTTTCTGAAATTACTT
11827295 CTC
131 CTC
11827298 CATCAATTCA
Statistics
Matches: 131, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
134 131 1.00
ACGTcount: A:0.25, C:0.26, G:0.13, T:0.36
Consensus pattern (134 bp):
TCCTTGCCTTAGAAACCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTTAAACC
CTAATGTCATGACATTTGTATCCTACACATTCCTAATGTTCAATCGGGACTTTCTGAAATTACTT
CTCT
Found at i:11834271 original size:16 final size:16
Alignment explanation
Indices: 11834252--11834282 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
11834242 CTTCTTCACT
11834252 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
11834268 TACTTACTTACTTAA
1 TACTCACTTACTTAA
11834283 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:11834288 original size:20 final size:20
Alignment explanation
Indices: 11834249--11834288 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
11834239 AAACTTCTTC
* *
11834249 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
11834269 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
11834289 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:11834548 original size:49 final size:52
Alignment explanation
Indices: 11834475--11834620 Score: 181
Period size: 49 Copynumber: 2.8 Consensus size: 52
11834465 AGCGGGTACT
* * *
11834475 TTACCATTTCCATGACTTGTCATGGTCTTACGTGGTATCCTT-TT-GAAA-C
1 TTACCATTGCCATGACTTGACATGGTCTTACATGGTATCCTTCTTAGAAACC
* *
11834524 TTACCATTGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACC
1 TTACCATTGCCATGACTTGACATGGTCTTACATGGTATCCTT--CTTAGAAACC
* *
11834578 TTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 TTACC-ATTGCCATGACTTGACATGGTCTTACATGGTATCCTT
11834621 AAACCCTAAT
Statistics
Matches: 83, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
49 37 0.45
52 2 0.02
53 4 0.05
54 6 0.07
55 34 0.41
ACGTcount: A:0.21, C:0.25, G:0.16, T:0.38
Consensus pattern (52 bp):
TTACCATTGCCATGACTTGACATGGTCTTACATGGTATCCTTCTTAGAAACC
Found at i:11848019 original size:27 final size:27
Alignment explanation
Indices: 11847961--11848050 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
11847951 AGGAAGCGTC
11847961 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
11847989 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
11848016 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
11848045 CTGGTG
1 CTGGTG
11848051 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:11848069 original size:55 final size:56
Alignment explanation
Indices: 11847961--11848075 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
11847951 AGGAAGCGTC
* *
11847961 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
11848016 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
11848072 CTGG
1 CTGG
11848076 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:11848538 original size:19 final size:19
Alignment explanation
Indices: 11848514--11848552 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
11848504 TTTTAATTAT
* *
11848514 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
11848533 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
11848552 T
1 T
11848553 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:11849960 original size:49 final size:49
Alignment explanation
Indices: 11849890--11850068 Score: 225
Period size: 49 Copynumber: 3.7 Consensus size: 49
11849880 CATCAAAGTC
* * *
11849890 GATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGCC
1 GATGTCATGTCCCAGATAGGTCTTACACTGACTTTCATATATCGAGGCT
* * *
11849939 GATGTCTTGTCCCAGATAGGTCTTACACTAACATTCATATATCGAGGCT
1 GATGTCATGTCCCAGATAGGTCTTACACTGACTTTCATATATCGAGGCT
* * * ** *
11849988 GATGTCATGTCCCAGATAGATCTTACACTGGCTCTCACCTATCG-GTGTT
1 GATGTCATGTCCCAGATAGGTCTTACACTGACTTTCATATATCGAG-GCT
*
11850037 GATGCCATGTCCCAGATAGGTCTTACACTGAC
1 GATGTCATGTCCCAGATAGGTCTTACACTGAC
11850069 ACACAACAAG
Statistics
Matches: 111, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
48 1 0.01
49 110 0.99
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (49 bp):
GATGTCATGTCCCAGATAGGTCTTACACTGACTTTCATATATCGAGGCT
Found at i:11853123 original size:27 final size:27
Alignment explanation
Indices: 11853092--11853242 Score: 176
Period size: 27 Copynumber: 5.6 Consensus size: 27
11853082 TAAATTGTAC
*
11853092 AGCACTAAGTGTGGGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
11853119 TGCACTAAGTGTGCGAATTGACCATGC
1 AGCACTAAGTGTGCGATTTGACTATGT
*
11853146 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * *
11853174 GGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
11853201 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
11853228 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
11853243 GACTCAATAT
Statistics
Matches: 107, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
27 83 0.78
28 24 0.22
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:11853179 original size:55 final size:55
Alignment explanation
Indices: 11853091--11853242 Score: 182
Period size: 55 Copynumber: 2.8 Consensus size: 55
11853081 TTAAATTGTA
* * *
11853091 CAGCACTAAGTGTGGGA-TTTGACTATGTTGCACTAAGTGTGCGAATTGACCATG
1 CAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTGACCACG
* * * **
11853145 CGGCACTAAGTGTGCGAGTTTGACTATGTGGCACTAAGTGTGCGATTTGATTACG
1 CAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTGACCACG
* * * *
11853200 TAGCACTAAGTGTGCGAG-TTGATTATATAGCACTGAGTGTGCG
1 CAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCG
11853243 GACTCAATAT
Statistics
Matches: 84, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
54 36 0.43
55 48 0.57
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.30
Consensus pattern (55 bp):
CAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTGACCACG
Found at i:11855830 original size:85 final size:85
Alignment explanation
Indices: 11855683--11855856 Score: 341
Period size: 85 Copynumber: 2.1 Consensus size: 85
11855673 ACTTCGGTAG
11855683 CTAG-TGTAGGGAATAATCGTCACGAGAAACCTGAATGTCCCCAATGTGGAAGACGACACCTAGG
1 CTAGCTGTAGGGAATAATCGTCACGAGAAACCTGAATGTCCCCAATGTGGAAGACGACACCTAGG
11855747 TGAATGTTGGGGCAAGTCTA
66 TGAATGTTGGGGCAAGTCTA
11855767 CTAGCTGTAGGGAATAATCGTCACGAGAAACCTGAATGTCCCCAATGTGGAAGACGACACCTAGG
1 CTAGCTGTAGGGAATAATCGTCACGAGAAACCTGAATGTCCCCAATGTGGAAGACGACACCTAGG
11855832 TGAATGTTGGGGCAAGTCTA
66 TGAATGTTGGGGCAAGTCTA
11855852 CTAGC
1 CTAGC
11855857 AGGGCCTGTT
Statistics
Matches: 89, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
84 4 0.04
85 85 0.96
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.21
Consensus pattern (85 bp):
CTAGCTGTAGGGAATAATCGTCACGAGAAACCTGAATGTCCCCAATGTGGAAGACGACACCTAGG
TGAATGTTGGGGCAAGTCTA
Found at i:11862691 original size:17 final size:17
Alignment explanation
Indices: 11862669--11862701 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
11862659 TCAATTCAAT
11862669 CATTTATCGGGATTTAA
1 CATTTATCGGGATTTAA
*
11862686 CATTTATCGGGCTTTA
1 CATTTATCGGGATTTA
11862702 TTAGATATGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.15, G:0.18, T:0.42
Consensus pattern (17 bp):
CATTTATCGGGATTTAA
Found at i:11865607 original size:40 final size:40
Alignment explanation
Indices: 11865563--11865827 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
11865553 TACCGGATAT
* * * ** *
11865563 AAACAGGGGAATGTAAGTGCATTCAGGAATACCGAAGTAC
1 AAACAGGGGCATGTATGTGCAATCAGGGGTACCAAAGTAC
*
11865603 AAACAGGGGCATGTATGTGCAATCAGGGGTACCGAAGTAC
1 AAACAGGGGCATGTATGTGCAATCAGGGGTACCAAAGTAC
* * * *
11865643 AAACAGGGGCACGTATGTGCAATCAAGGGCACCGAAGTAC
1 AAACAGGGGCATGTATGTGCAATCAGGGGTACCAAAGTAC
* * * *
11865683 AAATAGGAGCACGTATGTACAATC-GGGGATACCAAAGTAC
1 AAACAGGGGCATGTATGTGCAATCAGGGG-TACCAAAGTAC
*
11865723 AAACAAGGGCATGTATGTGCAATCAGGGGTACCAAAGTAC
1 AAACAGGGGCATGTATGTGCAATCAGGGGTACCAAAGTAC
* * *
11865763 AAACAAGGGCATGTATGTGCAATCAAGGGTACCAAAGTAT
1 AAACAGGGGCATGTATGTGCAATCAGGGGTACCAAAGTAC
**
11865803 AAACAGGGGCACATATGTGCAATCA
1 AAACAGGGGCATGTATGTGCAATCA
11865828 CTAATAATTA
Statistics
Matches: 199, Mismatches: 24, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
39 3 0.02
40 192 0.96
41 4 0.02
ACGTcount: A:0.38, C:0.18, G:0.28, T:0.17
Consensus pattern (40 bp):
AAACAGGGGCATGTATGTGCAATCAGGGGTACCAAAGTAC
Found at i:11865631 original size:20 final size:20
Alignment explanation
Indices: 11865606--11865674 Score: 68
Period size: 20 Copynumber: 3.5 Consensus size: 20
11865596 GAAGTACAAA
*
11865606 CAGGGGCATGTATGTGCAAT
1 CAGGGGCACGTATGTGCAAT
* * * *
11865626 CAGGGGTACCG-AAGTACAAA
1 CAGGGGCA-CGTATGTGCAAT
11865646 CAGGGGCACGTATGTGCAAT
1 CAGGGGCACGTATGTGCAAT
*
11865666 CAAGGGCAC
1 CAGGGGCAC
11865675 CGAAGTACAA
Statistics
Matches: 37, Mismatches: 10, Indels: 4
0.73 0.20 0.08
Matches are distributed among these distances:
19 2 0.05
20 34 0.92
21 1 0.03
ACGTcount: A:0.30, C:0.20, G:0.33, T:0.16
Consensus pattern (20 bp):
CAGGGGCACGTATGTGCAAT
Found at i:11865791 original size:20 final size:20
Alignment explanation
Indices: 11865726--11865791 Score: 60
Period size: 20 Copynumber: 3.3 Consensus size: 20
11865716 AAAGTACAAA
11865726 CAAGGGCATGTATGTGCAAT
1 CAAGGGCATGTATGTGCAAT
* * *** * * *
11865746 CAGGGGTACCAAAGTACAAA
1 CAAGGGCATGTATGTGCAAT
11865766 CAAGGGCATGTATGTGCAAT
1 CAAGGGCATGTATGTGCAAT
11865786 CAAGGG
1 CAAGGG
11865792 TACCAAAGTA
Statistics
Matches: 30, Mismatches: 16, Indels: 0
0.65 0.35 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.35, C:0.17, G:0.30, T:0.18
Consensus pattern (20 bp):
CAAGGGCATGTATGTGCAAT
Found at i:11865820 original size:120 final size:120
Alignment explanation
Indices: 11865591--11865826 Score: 364
Period size: 120 Copynumber: 2.0 Consensus size: 120
11865581 GCATTCAGGA
* * * *
11865591 ATACCGAAGTACAAACAGGGGCATGTATGTGCAATCAGGGGTACCGAAGTACAAACAGGGGCACG
1 ATACCAAAGTACAAACAAGGGCATGTATGTGCAATCAGGGGTACCAAAGTACAAACAAGGGCACG
* * *
11865656 TATGTGCAATCAAGGGCACCGAAGTACAAATAGGAGCACGTATGTACAATCGGGG
66 TATGTGCAATCAAGGGCACCAAAGTACAAACAGGAGCACATATGTACAATCGGGG
*
11865711 ATACCAAAGTACAAACAAGGGCATGTATGTGCAATCAGGGGTACCAAAGTACAAACAAGGGCATG
1 ATACCAAAGTACAAACAAGGGCATGTATGTGCAATCAGGGGTACCAAAGTACAAACAAGGGCACG
* * * *
11865776 TATGTGCAATCAAGGGTACCAAAGTATAAACAGGGGCACATATGTGCAATC
66 TATGTGCAATCAAGGGCACCAAAGTACAAACAGGAGCACATATGTACAATC
11865827 ACTAATAATT
Statistics
Matches: 104, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
120 104 1.00
ACGTcount: A:0.37, C:0.19, G:0.27, T:0.17
Consensus pattern (120 bp):
ATACCAAAGTACAAACAAGGGCATGTATGTGCAATCAGGGGTACCAAAGTACAAACAAGGGCACG
TATGTGCAATCAAGGGCACCAAAGTACAAACAGGAGCACATATGTACAATCGGGG
Found at i:11872609 original size:17 final size:17
Alignment explanation
Indices: 11872587--11872619 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
11872577 TCAATTCAAT
11872587 CATTTATCGGGATTTAA
1 CATTTATCGGGATTTAA
*
11872604 CATTTATCGGGCTTTA
1 CATTTATCGGGATTTA
11872620 TCCGATATGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.15, G:0.18, T:0.42
Consensus pattern (17 bp):
CATTTATCGGGATTTAA
Found at i:11873521 original size:36 final size:37
Alignment explanation
Indices: 11873481--11873554 Score: 123
Period size: 38 Copynumber: 2.0 Consensus size: 37
11873471 TGAATTGAAG
*
11873481 AAAGAAAAC-AAAAAAAAGGTGTTCATTCTTGAACAT
1 AAAGAAAACAAAAAAAAAAGTGTTCATTCTTGAACAT
11873517 AAAGAAAACAAAAAAAAAAAGTGTTCATTCTTGAACAT
1 AAAGAAAAC-AAAAAAAAAAGTGTTCATTCTTGAACAT
11873555 CTTTGGCCAA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
36 9 0.26
38 26 0.74
ACGTcount: A:0.55, C:0.11, G:0.12, T:0.22
Consensus pattern (37 bp):
AAAGAAAACAAAAAAAAAAGTGTTCATTCTTGAACAT
Found at i:11875031 original size:40 final size:40
Alignment explanation
Indices: 11874926--11875108 Score: 221
Period size: 39 Copynumber: 4.6 Consensus size: 40
11874916 GGATTGATAC
* *
11874926 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATA
* * *
11874966 CCGAGCTAAG-CCTGAAGGCATTTGTGCGAGTTACT-ATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-A
* *
11875005 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATA
* *
11875045 CCGAGC-AAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-A
* *
11875084 CCAGGCTAAGTCCCGAAGACATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
11875109 AGCTAGTAGC
Statistics
Matches: 121, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
38 4 0.03
39 62 0.51
40 53 0.44
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATA
Found at i:11875062 original size:79 final size:79
Alignment explanation
Indices: 11874926--11875115 Score: 328
Period size: 79 Copynumber: 2.4 Consensus size: 79
11874916 GGATTGATAC
*
11874926 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGAGCTAAGCCTGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGAGCTAAGCCCGAAGGCATTTGT
11874991 GCGAGTTACTATAA
66 GCGAGTTACTATAA
11875005 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGAGC-AAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGAGCTAAG-CCCGAAGGCATTTG
11875069 TGCGAGTTACTATAA
65 TGCGAGTTACTATAA
* * *
11875084 CCAGGCTAAGTCCCGAAGACATTTGAGCTAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT
11875116 AGCTGTATCC
Statistics
Matches: 106, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
78 3 0.03
79 103 0.97
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGAGCTAAGCCCGAAGGCATTTGT
GCGAGTTACTATAA
Found at i:11875139 original size:79 final size:80
Alignment explanation
Indices: 11874929--11875141 Score: 294
Period size: 79 Copynumber: 2.7 Consensus size: 80
11874919 TTGATACCCG
* *
11874929 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGAGCTAAGC-CTGAAGGCATTTGTGC
1 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGAGCTAAACTCCGAAGGCATTTGTGC
*
11874993 GAGTTACTATAACCG
66 GAGTTACTATAACCA
*
11875008 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGAGC--AAGTCCCGAAGGCATTTGTG
1 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGAGCTAAACT-CCGAAGGCATTTGTG
11875071 CGAGTTACTATAACCA
65 CGAGTTACTATAACCA
* * *
11875087 GGCTAAGTCCCGAAGACATTTGAGCTAGT-AGCT-GTATCCG-GCTAAACTCCGAAGG
1 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGA-CTAAT-TCCGAGCTAAACTCCGAAGG
11875142 TACTTGGTTT
Statistics
Matches: 120, Mismatches: 8, Indels: 12
0.86 0.06 0.09
Matches are distributed among these distances:
77 1 0.01
78 4 0.03
79 112 0.93
80 3 0.03
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGAGCTAAACTCCGAAGGCATTTGTGC
GAGTTACTATAACCA
Found at i:11879894 original size:14 final size:16
Alignment explanation
Indices: 11879864--11879896 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
11879854 TTTTCTTTAT
11879864 TTTATTATTTATCATC
1 TTTATTATTTATCATC
11879880 TTTATT-TTT-TCATC
1 TTTATTATTTATCATC
11879894 TTT
1 TTT
11879897 CCAATTTTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.47
15 3 0.18
16 6 0.35
ACGTcount: A:0.18, C:0.12, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTATTATTTATCATC
Found at i:11882540 original size:50 final size:49
Alignment explanation
Indices: 11882418--11882593 Score: 203
Period size: 50 Copynumber: 3.5 Consensus size: 49
11882408 TGAGGTCGCA
* * * *
11882418 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT-GATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC--AGACTGTAGGTCACG
**
11882469 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGA-TGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GT-AGGTCACG
* * * *
11882519 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGACTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
11882568 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
11882594 TGCTACCAGA
Statistics
Matches: 108, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
47 1 0.01
48 4 0.04
49 30 0.28
50 42 0.39
51 31 0.29
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
Found at i:11882623 original size:101 final size:99
Alignment explanation
Indices: 11882418--11882604 Score: 218
Period size: 99 Copynumber: 1.9 Consensus size: 99
11882408 TGAGGTCGCA
* *
11882418 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCC-AAAACTGTGATCACATGTGTAGTACTAAG
** * *
11882483 TGCAGGCTACTACGTGTATTAGATGGTGAGGTCACG
65 TGCAGGCTACTAC-TGTACCAGATGCTGAGGTCAAG
* * * * *
11882519 TGTGTAGTACTAAGTGTAGGCTACTACGTGTA-CC-AGACTGTTGGTCGCATGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCAAAACTG-TGATCACATGTGTAGTACTAAG
11882582 TGCAGGCTACTA-TGCTACCAGAT
65 TGCAGGCTACTACTG-TACCAGAT
11882605 AGCTTCGGCT
Statistics
Matches: 75, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
97 2 0.03
98 11 0.15
99 31 0.41
100 2 0.03
101 29 0.39
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (99 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCAAAACTGTGATCACATGTGTAGTACTAAGT
GCAGGCTACTACTGTACCAGATGCTGAGGTCAAG
Found at i:11885126 original size:30 final size:30
Alignment explanation
Indices: 11885092--11885151 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
11885082 CTTTAATACG
11885092 AACTTTGGCAA-AATTACA-TTTTTGCCCCTA
1 AACTTTGG-AATAATTACACTTTTT-CCCCTA
*
11885122 AACTTTTGAATAATTACACTTTTTCCCCTA
1 AACTTTGGAATAATTACACTTTTTCCCCTA
11885152 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
29 2 0.07
30 20 0.74
31 5 0.19
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (30 bp):
AACTTTGGAATAATTACACTTTTTCCCCTA
Found at i:11892535 original size:30 final size:29
Alignment explanation
Indices: 11892501--11892558 Score: 80
Period size: 30 Copynumber: 2.0 Consensus size: 29
11892491 CTTTAATACG
*
11892501 AACTTTGGAAAAATTACATTTTTGCCCCTT
1 AACTTTGGAAAAATTACACTTTT-CCCCTT
* *
11892531 AACTTTTGAATAATTACACTTTTCCCCT
1 AACTTTGGAAAAATTACACTTTTCCCCT
11892559 AGGCTCGGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 5 0.20
30 20 0.80
ACGTcount: A:0.29, C:0.22, G:0.07, T:0.41
Consensus pattern (29 bp):
AACTTTGGAAAAATTACACTTTTCCCCTT
Found at i:11893859 original size:40 final size:40
Alignment explanation
Indices: 11893812--11894069 Score: 356
Period size: 40 Copynumber: 6.5 Consensus size: 40
11893802 GTATAAATAG
* * * ** * *
11893812 GGGCACGTAAGTGCATTTAGGAATACCGAAGTACAAAGAG
1 GGGCACGTATGTGCAATCAGGGGTACCGAAGTACAAACAA
* *
11893852 GGGCACGTATGTGCAATCAGGGGTACCAAAGTACAAATAA
1 GGGCACGTATGTGCAATCAGGGGTACCGAAGTACAAACAA
* * *
11893892 GGGCACGTATGTGCAATTAGGGGTACCGAAGTACAAATAG
1 GGGCACGTATGTGCAATCAGGGGTACCGAAGTACAAACAA
*
11893932 GGGCACGTATGTGCAATCAGGGGTA-CAAAGTACAAACAA
1 GGGCACGTATGTGCAATCAGGGGTACCGAAGTACAAACAA
*
11893971 GGGCACGTAAGTGCAATCAGGGGTACCGAAGTACAAACAA
1 GGGCACGTATGTGCAATCAGGGGTACCGAAGTACAAACAA
* * *
11894011 GGGCACGTATGTGCAATCAAGGGTACCAAAGTATAAACAA
1 GGGCACGTATGTGCAATCAGGGGTACCGAAGTACAAACAA
11894051 GGGCACGTATGTGCAATCA
1 GGGCACGTATGTGCAATCA
11894070 CCAATAATTA
Statistics
Matches: 196, Mismatches: 21, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
39 35 0.18
40 161 0.82
ACGTcount: A:0.36, C:0.17, G:0.29, T:0.17
Consensus pattern (40 bp):
GGGCACGTATGTGCAATCAGGGGTACCGAAGTACAAACAA
Found at i:11893934 original size:20 final size:19
Alignment explanation
Indices: 11893838--11894007 Score: 67
Period size: 20 Copynumber: 8.6 Consensus size: 19
11893828 TTAGGAATAC
* *
11893838 CGAAGTACAAAGAGGGGCA
1 CGAAGTACAAATAGGGGTA
* *
11893857 CGTATGTGC-AATCAGGGGTA
1 CG-AAGTACAAAT-AGGGGTA
* * *
11893877 CCAAAGTACAAATAAGGGCA
1 -CGAAGTACAAATAGGGGTA
* * *
11893897 CGTATGTGCAATTAGGGGTA
1 CG-AAGTACAAATAGGGGTA
*
11893917 CCGAAGTACAAATAGGGGCA
1 -CGAAGTACAAATAGGGGTA
* *
11893937 CGTATGTGC-AATCAGGGGTA
1 CG-AAGTACAAAT-AGGGGTA
* * * *
11893957 CAAAGTACAAACAAGGGCA
1 CGAAGTACAAATAGGGGTA
*
11893976 CGTAAGTGC-AATCAGGGGTA
1 CG-AAGTACAAAT-AGGGGTA
11893996 CCGAAGTACAAA
1 -CGAAGTACAAA
11894008 CAAGGGCACG
Statistics
Matches: 104, Mismatches: 34, Indels: 24
0.64 0.21 0.15
Matches are distributed among these distances:
19 22 0.21
20 72 0.69
21 10 0.10
ACGTcount: A:0.37, C:0.17, G:0.30, T:0.16
Consensus pattern (19 bp):
CGAAGTACAAATAGGGGTA
Found at i:11893939 original size:80 final size:80
Alignment explanation
Indices: 11893812--11894067 Score: 397
Period size: 80 Copynumber: 3.2 Consensus size: 80
11893802 GTATAAATAG
* ** *
11893812 GGGCACGTAAGTGCATTTAGGAATACCGAAGTACAAAGAGGGGCACGTATGTGCAATCAGGGGTA
1 GGGCACGTAAGTGCAATTAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTA
*
11893877 CCAAAGTACAAATAA
66 CCAAAGTACAAACAA
* *
11893892 GGGCACGTATGTGCAATTAGGGGTACCGAAGTACAAATAGGGGCACGTATGTGCAATCAGGGGTA
1 GGGCACGTAAGTGCAATTAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTA
11893957 -CAAAGTACAAACAA
66 CCAAAGTACAAACAA
* * *
11893971 GGGCACGTAAGTGCAATCAGGGGTACCGAAGTACAAACAAGGGCACGTATGTGCAATCAAGGGTA
1 GGGCACGTAAGTGCAATTAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTA
*
11894036 CCAAAGTATAAACAA
66 CCAAAGTACAAACAA
*
11894051 GGGCACGTATGTGCAAT
1 GGGCACGTAAGTGCAAT
11894068 CACCAATAAT
Statistics
Matches: 162, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
79 73 0.45
80 89 0.55
ACGTcount: A:0.36, C:0.17, G:0.29, T:0.17
Consensus pattern (80 bp):
GGGCACGTAAGTGCAATTAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTA
CCAAAGTACAAACAA
Found at i:11894007 original size:119 final size:120
Alignment explanation
Indices: 11893806--11894069 Score: 368
Period size: 119 Copynumber: 2.2 Consensus size: 120
11893796 TACCGGGTAT
* * * * * * *
11893806 AAATAGGGGCACGTAAGTGCATTTAGGAATACCGAAGTACAAAGAGGGGCACGTATGTGCAATCA
1 AAATAGGGGCACGTATGTGCAATCAGGAATACCAAAGTACAAACAAGGGCACGTAAGTGCAATCA
* * * *
11893871 GGGGTACCAAAGTACAAATAAGGGCACGTATGTGCAATTAGGGGTACCGAAGTAC
66 GGGGTACCAAAGTACAAACAAGGGCACGTATGTGCAATCAAGGGTACCAAAGTAC
**
11893926 AAATAGGGGCACGTATGTGCAATCAGGGGTA-CAAAGTACAAACAAGGGCACGTAAGTGCAATCA
1 AAATAGGGGCACGTATGTGCAATCAGGAATACCAAAGTACAAACAAGGGCACGTAAGTGCAATCA
* *
11893990 GGGGTACCGAAGTACAAACAAGGGCACGTATGTGCAATCAAGGGTACCAAAGTAT
66 GGGGTACCAAAGTACAAACAAGGGCACGTATGTGCAATCAAGGGTACCAAAGTAC
* *
11894045 AAACAAGGGCACGTATGTGCAATCA
1 AAATAGGGGCACGTATGTGCAATCA
11894070 CCAATAATTA
Statistics
Matches: 127, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
119 101 0.80
120 26 0.20
ACGTcount: A:0.37, C:0.17, G:0.29, T:0.17
Consensus pattern (120 bp):
AAATAGGGGCACGTATGTGCAATCAGGAATACCAAAGTACAAACAAGGGCACGTAAGTGCAATCA
GGGGTACCAAAGTACAAACAAGGGCACGTATGTGCAATCAAGGGTACCAAAGTAC
Found at i:11895783 original size:36 final size:36
Alignment explanation
Indices: 11895701--11895783 Score: 112
Period size: 36 Copynumber: 2.3 Consensus size: 36
11895691 CATATTATAA
11895701 TCACTATCACATGGCATGAATAACATAACCACATAT
1 TCACTATCACATGGCATGAATAACATAACCACATAT
* * * **
11895737 TTACTATCACATGGCATGCATAACATACCCATGTAT
1 TCACTATCACATGGCATGAATAACATAACCACATAT
*
11895773 TCACTTTCACA
1 TCACTATCACA
11895784 ACAATCATCA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.36, C:0.27, G:0.08, T:0.29
Consensus pattern (36 bp):
TCACTATCACATGGCATGAATAACATAACCACATAT
Found at i:11896320 original size:37 final size:37
Alignment explanation
Indices: 11896279--11896352 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
11896269 ATGACTAATT
*
11896279 CCCAACCTTTAAACTACACAAAATTATTCAGTTCATG
1 CCCAACCTTTAAACTACACAAAATTACTCAGTTCATG
11896316 CCCAACCTTTAAACTACACAAAATTACTCAGTTCATG
1 CCCAACCTTTAAACTACACAAAATTACTCAGTTCATG
11896353 GTATTGACAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.38, C:0.28, G:0.05, T:0.28
Consensus pattern (37 bp):
CCCAACCTTTAAACTACACAAAATTACTCAGTTCATG
Found at i:11896785 original size:28 final size:28
Alignment explanation
Indices: 11896745--11896802 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
11896735 AGATTTATGG
*
11896745 TTCAAAGGATGTTGGAAATCAAGAGGAA
1 TTCAAAGGATGTTGGAAATCAAGAGAAA
11896773 TTCAAAGGATGTTGGAAATCAAGAGAAA
1 TTCAAAGGATGTTGGAAATCAAGAGAAA
11896801 TT
1 TT
11896803 AGGATTTGGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.43, C:0.07, G:0.26, T:0.24
Consensus pattern (28 bp):
TTCAAAGGATGTTGGAAATCAAGAGAAA
Found at i:11899988 original size:20 final size:20
Alignment explanation
Indices: 11899955--11900029 Score: 102
Period size: 20 Copynumber: 3.9 Consensus size: 20
11899945 ATACGTGGGA
11899955 TATGATAT--ACATGAT-TG
1 TATGATATGCACATGATATG
*
11899972 ATATGTTATGCACATGATATG
1 -TATGATATGCACATGATATG
11899993 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
*
11900013 TATGAAATGCACATGAT
1 TATGATATGCACATGAT
11900030 GTATTCATAA
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
18 7 0.14
20 42 0.82
21 2 0.04
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.36
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:11900157 original size:52 final size:51
Alignment explanation
Indices: 11900079--11900208 Score: 203
Period size: 52 Copynumber: 2.6 Consensus size: 51
11900069 GAGGAAGTGC
*
11900079 AAAAGGGCTTATGCCCTAGTTTATTGAAAACGGCTTATGCCCCAATTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAACGGCTT-TGCCCCAATTTACCG
* *
11900131 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAACGGCTTTGCCCCAATTTACCG
11900182 AAAAGGGCTT-TGCCCCAG-TTATT-AAAA
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAA
11900209 GAGGCTAGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
48 4 0.05
49 5 0.07
50 8 0.11
51 24 0.32
52 34 0.45
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAACGGCTTTGCCCCAATTTACCG
Found at i:11900176 original size:25 final size:26
Alignment explanation
Indices: 11900079--11900214 Score: 172
Period size: 26 Copynumber: 5.3 Consensus size: 26
11900069 GAGGAAGTGC
*
11900079 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* * **
11900105 AAAACGGCTTATGCCCCAATTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
11900131 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
11900157 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
11900182 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
11900205 AAAAGAGGCT
1 AAAAG-GGCT
11900215 AGGCCTCCAG
Statistics
Matches: 96, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
23 5 0.05
24 7 0.07
25 31 0.32
26 53 0.55
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:11902524 original size:53 final size:53
Alignment explanation
Indices: 11902421--11902524 Score: 136
Period size: 53 Copynumber: 2.0 Consensus size: 53
11902411 TTCCTTTTTA
* * * *
11902421 AACTTACCATTGCTATGTCTTGACATAGTCTTACGTGGTATCCTTCCCTTATG
1 AACTCACCATTGCTATGCCTTGACATAGTCTTACATGGGATCCTTCCCTTATG
* * * *
11902474 AACTCACCATTGCTATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTA
1 AACTCACCATTGCTATGCCTTGACATAGTCTTACATGGGATCCTTCCCTTA
11902525 CCGTAGTTTA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
53 43 1.00
ACGTcount: A:0.20, C:0.25, G:0.17, T:0.38
Consensus pattern (53 bp):
AACTCACCATTGCTATGCCTTGACATAGTCTTACATGGGATCCTTCCCTTATG
Found at i:11909805 original size:53 final size:53
Alignment explanation
Indices: 11909721--11909825 Score: 131
Period size: 53 Copynumber: 2.0 Consensus size: 53
11909711 TTCCTTTTTA
* * * * *
11909721 AACTTACCATTGCTATGTCTTGACATAGTCTTACATGGTATCCTTGCCTTATG
1 AACTCACCATTGCCATGCCTTGACATAGTCTTACATGGGATCCTTACCTTATG
* *
11909774 AACTCACCATTGCCATGCCTT-AGCATGGTCTTACATGGGATCTTTACCTTAT
1 AACTCACCATTGCCATGCCTTGA-CATAGTCTTACATGGGATCCTTACCTTAT
11909826 CGTAGTTTAT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
52 1 0.02
53 43 0.98
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.37
Consensus pattern (53 bp):
AACTCACCATTGCCATGCCTTGACATAGTCTTACATGGGATCCTTACCTTATG
Found at i:11921422 original size:51 final size:51
Alignment explanation
Indices: 11921351--11921489 Score: 145
Period size: 51 Copynumber: 2.7 Consensus size: 51
11921341 CGCATGTATA
* * * *** *
11921351 GTACTAGGTGTAGGCTACTATGTGTGCTAGATAGCTTCGATCACATGTGTG
1 GTACTAAGTGAAGGCCACTATGTGTAAAAGATAGCTTCGATCACAAGTGTG
* * *
11921402 GTACTAAGTGCAGGCCACTATGTGTAAAAGATAGCTTGGGTCACAAGTGTG
1 GTACTAAGTGAAGGCCACTATGTGTAAAAGATAGCTTCGATCACAAGTGTG
* * *
11921453 GTACTATGTGAAGGCCACTTTGTG-AAGAAGGTAGCTT
1 GTACTAAGTGAAGGCCACTATGTGTAA-AAGATAGCTT
11921490 TGACTACAAC
Statistics
Matches: 74, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
50 2 0.03
51 72 0.97
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (51 bp):
GTACTAAGTGAAGGCCACTATGTGTAAAAGATAGCTTCGATCACAAGTGTG
Found at i:11926898 original size:27 final size:26
Alignment explanation
Indices: 11926850--11926901 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
11926840 GCGAGGCTAC
*
11926850 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
11926876 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
11926902 TTGCGCGAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:11928711 original size:28 final size:28
Alignment explanation
Indices: 11928671--11928738 Score: 91
Period size: 28 Copynumber: 2.4 Consensus size: 28
11928661 GCAATCAAAT
11928671 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* * *
11928699 ATGGCATTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
**
11928727 ATGAAACTTAGT
1 ATGGCACTTAGT
11928739 TTGCAAAATA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.34, C:0.09, G:0.26, T:0.31
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAGA
Found at i:11928749 original size:28 final size:28
Alignment explanation
Indices: 11928676--11928749 Score: 76
Period size: 28 Copynumber: 2.6 Consensus size: 28
11928666 CAAATATGGC
* * **
11928676 ACTTAGTGTACGAAATATTGAGAATGGC
1 ACTTAGTGTGCAAAATATTGAGAATGAA
* * *
11928704 ATTTAGTGTGCGAGATATTGAGAATGAA
1 ACTTAGTGTGCAAAATATTGAGAATGAA
*
11928732 ACTTAGTTTGCAAAATAT
1 ACTTAGTGTGCAAAATAT
11928750 CGAATGATTT
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.36, C:0.08, G:0.23, T:0.32
Consensus pattern (28 bp):
ACTTAGTGTGCAAAATATTGAGAATGAA
Found at i:11940650 original size:56 final size:56
Alignment explanation
Indices: 11940564--11940672 Score: 200
Period size: 56 Copynumber: 1.9 Consensus size: 56
11940554 GACCGAATGG
11940564 TACCCATATCTATACAAGCCCATATACATTTTAGTCCCTCAAATTATTATTTTTGT
1 TACCCATATCTATACAAGCCCATATACATTTTAGTCCCTCAAATTATTATTTTTGT
* *
11940620 TACCCATATCTATACAATCCCATATACATTTTAGTCCCTCATATTATTATTTT
1 TACCCATATCTATACAAGCCCATATACATTTTAGTCCCTCAAATTATTATTTT
11940673 CGCAATTTAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 51 1.00
ACGTcount: A:0.30, C:0.24, G:0.04, T:0.42
Consensus pattern (56 bp):
TACCCATATCTATACAAGCCCATATACATTTTAGTCCCTCAAATTATTATTTTTGT
Found at i:11944980 original size:50 final size:49
Alignment explanation
Indices: 11944862--11945087 Score: 258
Period size: 50 Copynumber: 4.5 Consensus size: 49
11944852 CTTATACGCA
* *
11944862 TAGTAGCCTGCACTTAGTACTACACATGCGA-TCAACAATCCGTTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACTCAAC-ATCTGATACACG
* *
11944911 TAGTAGCCTGCACTTAGTACTACACATGTGACCTCATCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-CTCAACATCTGATACACG
* * * * * *
11944961 TAGTAGCCTGCACTTAGTACTACACACGTGATTGAAGTCAT-TGAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGACTCAA--CATCTGA-TACACG
* *
11945012 TAGTAGCCTGCACTTAGTACTACACATGCGACTTAACAGTATGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACTCAACA-TCTGATACACG
* *
11945062 TAGTAGCCTACACATAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
11945088 CGTGTATTCA
Statistics
Matches: 152, Mismatches: 18, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
49 34 0.22
50 72 0.47
51 46 0.30
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACTCAACATCTGATACACG
Found at i:11952390 original size:26 final size:26
Alignment explanation
Indices: 11952361--11952443 Score: 68
Period size: 26 Copynumber: 3.3 Consensus size: 26
11952351 AGCTATCTTA
*
11952361 TACACATAGTAGCCTGCACTTAGTAC
1 TACACATAGTAGCCTACACTTAGTAC
* *
11952387 TACACAT-GT-GACTTA-AC--AGTATGA
1 TACACATAGTAG-CCTACACTTAGTA--C
*
11952411 TACACGTAGTAGCCTACACTTAGTAC
1 TACACATAGTAGCCTACACTTAGTAC
11952437 TACACAT
1 TACACAT
11952444 GTGTATTCAC
Statistics
Matches: 42, Mismatches: 7, Indels: 16
0.65 0.11 0.25
Matches are distributed among these distances:
22 4 0.10
24 9 0.21
25 9 0.21
26 16 0.38
28 4 0.10
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (26 bp):
TACACATAGTAGCCTACACTTAGTAC
Found at i:11953308 original size:216 final size:216
Alignment explanation
Indices: 11952934--11953988 Score: 2033
Period size: 216 Copynumber: 4.9 Consensus size: 216
11952924 AGTTGTCACA
* *
11952934 GCTTATCTCACAAGGTCTGTAACACAAGTCTCAAATGTTCAGCATGTTGGGTTTCATCAAGGGAA
1 GCTTATCTCGCAAGATCTGTAACACAAGTCTCAAATGTTCAGCATGTTGGGTTTCATCAAGGGAA
11952999 TAGATCAAAATGTCATCTATAAACACAACCACAAACTGGTCCAGATACGGTCTGAAGATTCGATT
66 TAGATCAAAATGTCATCTATAAACACAACCACAAACTGGTCCAGATACGGTCTGAAGATTCGATT
11953064 CATCAAATCCATGAAAATAGCAGGTGCATTAGTGAGTCCAAAAGGCATAACCAAAAACTCACATT
131 CATCAAATCCATGAAAATAGCAGGTGCATTAGTGAGTCCAAAAGGCATAACCAAAAACTCACATT
11953129 TACTGAATTTCGAATACAACT
196 TACTGAATTTCGAATACAACT
11953150 GCTTATCTCGCAAGATCTGTAACACAAGTCTCAAATGTTCAGCATGTTGGGTTTCATCAAGGGAA
1 GCTTATCTCGCAAGATCTGTAACACAAGTCTCAAATGTTCAGCATGTTGGGTTTCATCAAGGGAA
11953215 TAGATCAAAATGTCATCTATAAACACAACCACAAACTGGTCCAGATACGGTCTGAAGATTCGATT
66 TAGATCAAAATGTCATCTATAAACACAACCACAAACTGGTCCAGATACGGTCTGAAGATTCGATT
11953280 CATCAAATCCATGAAAATAGCAGGTGCATTAGTGAGTCCAAAAGGCATAACCAAAAACTCACATT
131 CATCAAATCCATGAAAATAGCAGGTGCATTAGTGAGTCCAAAAGGCATAACCAAAAACTCACATT
11953345 TACTGAATTTCGAATACAACT
196 TACTGAATTTCGAATACAACT
11953366 GCTTATCTCGCAAGATCTGTAACACAAGTCTCAAATGTTCAGCATGTTGGGTTTCATCAAGGGAA
1 GCTTATCTCGCAAGATCTGTAACACAAGTCTCAAATGTTCAGCATGTTGGGTTTCATCAAGGGAA
11953431 TAGATCAAAATGTCATCTATAAACACAACCACAAACTGGTCCAGATACGGTCTGAAGATTCGATT
66 TAGATCAAAATGTCATCTATAAACACAACCACAAACTGGTCCAGATACGGTCTGAAGATTCGATT
11953496 CATCAAATCCATGAAAATAGCAGGTGCATTAGTGAGTCCAAAAGGCATAACCAAAAACTCACATT
131 CATCAAATCCATGAAAATAGCAGGTGCATTAGTGAGTCCAAAAGGCATAACCAAAAACTCACATT
11953561 TACTGAATTTCGAATACAACT
196 TACTGAATTTCGAATACAACT
11953582 GCTTATCTCGCAAGATCTGTAACACAAGTCTCAAATGTTCAGCATGTTGGGTTTCATCAAGGGAA
1 GCTTATCTCGCAAGATCTGTAACACAAGTCTCAAATGTTCAGCATGTTGGGTTTCATCAAGGGAA
11953647 TAGATCAAAATGTCATCTATAAACACAACCACAAACTGGTCCAGATACGGTCTGAAGATTCGATT
66 TAGATCAAAATGTCATCTATAAACACAACCACAAACTGGTCCAGATACGGTCTGAAGATTCGATT
11953712 CATCAAATCCATGAAAATAGCAGGTGCATTAGTGAGTCCAAAAGGCATAACCAAAAACTCACATT
131 CATCAAATCCATGAAAATAGCAGGTGCATTAGTGAGTCCAAAAGGCATAACCAAAAACTCACATT
11953777 TACTGAATTTCGAATACAACT
196 TACTGAATTTCGAATACAACT
11953798 GCTTATCTCGCAAGATCTGTAACACAAGTCTCAAATGTTCAGCATGTTGGGTTTCATCAAGGGAA
1 GCTTATCTCGCAAGATCTGTAACACAAGTCTCAAATGTTCAGCATGTTGGGTTTCATCAAGGGAA
*
11953863 TAGATCAAAATGTCATCTATAAACACAACCACAAACCGGTCCAGATACGGTCTGAAGA-TCTGAT
66 TAGATCAAAATGTCATCTATAAACACAACCACAAACTGGTCCAGATACGGTCTGAAGATTC-GAT
* *
11953927 TCATGAAATCCATGAAAATAGCAGGTGCAATAGTGAGTCCGAAAA-GCATAACCAAAAACTCA
130 TCATCAAATCCATGAAAATAGCAGGTGCATTAGTGAGTCC-AAAAGGCATAACCAAAAACTCA
11953989 TAATGTCCAT
Statistics
Matches: 832, Mismatches: 5, Indels: 4
0.99 0.01 0.00
Matches are distributed among these distances:
215 2 0.00
216 826 0.99
217 4 0.00
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (216 bp):
GCTTATCTCGCAAGATCTGTAACACAAGTCTCAAATGTTCAGCATGTTGGGTTTCATCAAGGGAA
TAGATCAAAATGTCATCTATAAACACAACCACAAACTGGTCCAGATACGGTCTGAAGATTCGATT
CATCAAATCCATGAAAATAGCAGGTGCATTAGTGAGTCCAAAAGGCATAACCAAAAACTCACATT
TACTGAATTTCGAATACAACT
Found at i:11958386 original size:71 final size:71
Alignment explanation
Indices: 11958270--11958482 Score: 390
Period size: 71 Copynumber: 3.0 Consensus size: 71
11958260 CATACACAAC
11958270 TTATAACATACATAAATTAGCTTACTTACCTTATTTCTATAGAAAACGGATTATTACATACTTGA
1 TTATAACATACATAAATTAGCTTACTTACCTTATTTCTATAGAAAACGGATTATTACATACTTGA
11958335 TCTTTT
66 TCTTTT
11958341 TTATAACATACATAAATTAGCTTACTTACCTTATTTCTATAGAAAACGGATTATTACATACTTGA
1 TTATAACATACATAAATTAGCTTACTTACCTTATTTCTATAGAAAACGGATTATTACATACTTGA
11958406 TCTTTT
66 TCTTTT
* * * *
11958412 TTATAACATACATAAATTAGCTTACTTACCTTATTTCCATAGATAACAGATTATTACATACCTGA
1 TTATAACATACATAAATTAGCTTACTTACCTTATTTCTATAGAAAACGGATTATTACATACTTGA
11958477 TCTTTT
66 TCTTTT
11958483 AGCTCATATT
Statistics
Matches: 138, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 138 1.00
ACGTcount: A:0.35, C:0.16, G:0.07, T:0.42
Consensus pattern (71 bp):
TTATAACATACATAAATTAGCTTACTTACCTTATTTCTATAGAAAACGGATTATTACATACTTGA
TCTTTT
Found at i:11959858 original size:13 final size:13
Alignment explanation
Indices: 11959840--11959864 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11959830 GATATAAATT
11959840 CACAAAAAATAAA
1 CACAAAAAATAAA
11959853 CACAAAAAATAA
1 CACAAAAAATAA
11959865 TTTTTAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.76, C:0.16, G:0.00, T:0.08
Consensus pattern (13 bp):
CACAAAAAATAAA
Found at i:11963169 original size:50 final size:51
Alignment explanation
Indices: 11963064--11963208 Score: 139
Period size: 50 Copynumber: 2.8 Consensus size: 51
11963054 TGTGTTTAAA
* * * * * ** **
11963064 ATGGCTTTCGGTCACGTGTATAGTACTAAATGTAGGCTACTACGTGTACTTG
1 ATGGC-TTAGGTCACATGTGTAGTACTAAGTGTAGGCTACTATGCATACCCG
*
11963116 ATGG-TTAGGTCACATGTGTAGTGCTAAGTGTAGGCTACTATGCATACCCG
1 ATGGCTTAGGTCACATGTGTAGTACTAAGTGTAGGCTACTATGCATACCCG
* * * * *
11963166 ATGGCTTCGATCACATGTGTGGTACTAAGTGCAGGCCACTATG
1 ATGGCTTAGGTCACATGTGTAGTACTAAGTGTAGGCTACTATG
11963209 TGTAAAAGAT
Statistics
Matches: 76, Mismatches: 16, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
50 40 0.53
51 32 0.42
52 4 0.05
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (51 bp):
ATGGCTTAGGTCACATGTGTAGTACTAAGTGTAGGCTACTATGCATACCCG
Found at i:11966824 original size:46 final size:45
Alignment explanation
Indices: 11966656--11966825 Score: 173
Period size: 46 Copynumber: 3.7 Consensus size: 45
11966646 AGCATCCAAA
* * *
11966656 CTCGTTGACTTGAGTCCGAGTTCACTTATAGATGCGAATGTCTGAA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-CTGAG
* *** * *
11966702 CTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTAACTAG-GCAT-CTGAG
1 CTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATGCTGAG
*
11966749 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-CTGAG
*
11966795 CTCGTTGATTTGAGTCCGAGTTCACTTATGG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
11966826 GCGGGTTACA
Statistics
Matches: 100, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 1 0.01
46 59 0.59
47 29 0.29
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.28, T:0.32
Consensus pattern (45 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCTGAG
Found at i:11969791 original size:15 final size:15
Alignment explanation
Indices: 11969771--11969826 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
11969761 GTATCTTGGG
11969771 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
11969786 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
11969801 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
11969816 TTTCTTTATTC
1 TTTCTTTATTC
11969827 GGTTTCCTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 2 0.05
15 33 0.89
16 2 0.05
ACGTcount: A:0.12, C:0.16, G:0.11, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:11972279 original size:46 final size:46
Alignment explanation
Indices: 11972223--11972396 Score: 158
Period size: 46 Copynumber: 3.8 Consensus size: 46
11972213 TGGTTGAGCA
*
11972223 TCCGAACTCGTTTAGTTGAGTCCGAGTTCACTTATAGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAATG
* * * * * *
11972269 TCTGAACTCGTTGAGTTGAATCTGAGTT--C-GAGAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAA-T--G
* * *
11972314 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAATG
* * *
11972362 CCCGAGCTCGTTGATTTGAGTCCGAGTTCACTTAT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT
11972397 GGGCGGGTTA
Statistics
Matches: 101, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
42 2 0.02
43 7 0.07
44 1 0.01
45 1 0.01
46 57 0.56
47 24 0.24
48 1 0.01
49 1 0.01
50 5 0.05
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAATG
Found at i:11972389 original size:93 final size:93
Alignment explanation
Indices: 11972220--11972390 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 93
11972210 GGATGGTTGA
* * * *
11972220 GCATCCGAACTCGTTTAGTTGAGTCCGAGTTCACTTATAGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAGT
*
11972285 TGAATCTGAGTTCGAGAGATGTAACTAG
66 TGAATCCGAGTTCGAGAGATGTAACTAG
* * * *
11972313 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGATT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAGT
*
11972378 TGAGTCCGAGTTC
66 TGAATCCGAGTTC
11972391 ACTTATGGGC
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAGT
TGAATCCGAGTTCGAGAGATGTAACTAG
Found at i:11975698 original size:18 final size:19
Alignment explanation
Indices: 11975675--11975712 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
11975665 TATTGTTGTT
11975675 TTTTTTCTCATTT-ATTTA
1 TTTTTTCTCATTTAATTTA
* *
11975693 TTTTTTGTTATTTAATTTA
1 TTTTTTCTCATTTAATTTA
11975712 T
1 T
11975713 CTCTTTAATC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.18, C:0.05, G:0.03, T:0.74
Consensus pattern (19 bp):
TTTTTTCTCATTTAATTTA
Found at i:11979401 original size:176 final size:175
Alignment explanation
Indices: 11979155--11979502 Score: 678
Period size: 176 Copynumber: 2.0 Consensus size: 175
11979145 AAAATATGAA
11979155 ATTAAAGCTTATTGAGCTAGTTTTTCACAGAAGAAACGATGTAAGCAATGGATTTGTAAATTATG
1 ATTAAAGCTTATTGAGCTAGTTTTTCACAGAAGAAACGATGTAAGCAATGGATTTGTAAATTATG
11979220 AGATATAATGAATTTTGTGAGACAATGTTAGAATGAATTCGGGTTCCTCTGTTTTGACTTTGGAA
66 AGATATAATGAATTTTGTGAGACAATGTTAGAATGAATTCGGGTTCCTCTGTTTTGACTTTGGAA
*
11979285 AATCACCAAAAATTGGAGAAAATTAATTAGAGTCTCAAATTTTTT
131 AATCACCAAAAATTGGAGAAAATAAATTAGAGTCTCAAATTTTTT
11979330 ATTAAAGCTTATTGAGTCTAGTTTTTCACAGAAGAAACGATGTAAGCAATGGATTTGTAAATTAT
1 ATTAAAGCTTATTGAG-CTAGTTTTTCACAGAAGAAACGATGTAAGCAATGGATTTGTAAATTAT
11979395 GAGATATAATGAATTTTGTGAGACAATGTTAGAATGAATTCGGGTTCCTCTGTTTTGACTTTGGA
65 GAGATATAATGAATTTTGTGAGACAATGTTAGAATGAATTCGGGTTCCTCTGTTTTGACTTTGGA
11979460 AAATCACCAAAAATTGGAGAAAATAAATTAGAGTCTCAAATTT
130 AAATCACCAAAAATTGGAGAAAATAAATTAGAGTCTCAAATTT
11979503 ATATACTTAG
Statistics
Matches: 171, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
175 16 0.09
176 155 0.91
ACGTcount: A:0.36, C:0.10, G:0.19, T:0.35
Consensus pattern (175 bp):
ATTAAAGCTTATTGAGCTAGTTTTTCACAGAAGAAACGATGTAAGCAATGGATTTGTAAATTATG
AGATATAATGAATTTTGTGAGACAATGTTAGAATGAATTCGGGTTCCTCTGTTTTGACTTTGGAA
AATCACCAAAAATTGGAGAAAATAAATTAGAGTCTCAAATTTTTT
Found at i:11997936 original size:37 final size:37
Alignment explanation
Indices: 11997877--11998096 Score: 327
Period size: 37 Copynumber: 5.9 Consensus size: 37
11997867 AGCTCAGATG
* * *
11997877 AAATCTCCACACGAAGTTATCGGGTCTTACCTGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
11997914 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA-A
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
11997950 TATATTTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 -AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
11997988 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA-A
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
11998024 TATATTTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 -AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
11998062 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
11998097 ATATATTTCC
Statistics
Matches: 165, Mismatches: 14, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
36 2 0.01
37 161 0.98
38 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:11997975 original size:74 final size:74
Alignment explanation
Indices: 11997882--11998107 Score: 416
Period size: 74 Copynumber: 3.1 Consensus size: 74
11997872 AGATGAAATC
* * * *
11997882 TCCACACGAAGTTATCGGGTCTTACCTGGACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 TCCACACGTAGTCATCGGGTCTTACCCGGACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
11997947 GAATATATT
66 GAATATATT
11997956 TCCACACGTAGTCATCGGGTCTTACCCGGACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 TCCACACGTAGTCATCGGGTCTTACCCGGACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
11998021 GAATATATT
66 GAATATATT
11998030 TCCACACGTAGTCATCGGGTCTTACCCGGACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 TCCACACGTAGTCATCGGGTCTTACCCGGACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
11998095 GAATATATT
66 GAATATATT
11998104 TCCA
1 TCCA
11998108 AGTTTCATGT
Statistics
Matches: 148, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
74 148 1.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (74 bp):
TCCACACGTAGTCATCGGGTCTTACCCGGACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
GAATATATT
Found at i:11998295 original size:48 final size:48
Alignment explanation
Indices: 11998237--11998578 Score: 544
Period size: 48 Copynumber: 7.1 Consensus size: 48
11998227 ATATACACAC
* * * *
11998237 ATCTCCTACATATTTCACACTAGCCCTTCGGCTTTACCACATATACGT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
11998285 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
11998333 ATCTCATATATATATTTCACATTAGCCATTTGACTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
11998383 ATCCCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
11998431 AT-TCCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCT-CATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
11998479 ATCAT-ATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATC-TCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
11998527 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
11998575 ATCT
1 ATCT
11998579 TTATCTTGTG
Statistics
Matches: 274, Mismatches: 14, Indels: 12
0.91 0.05 0.04
Matches are distributed among these distances:
47 1 0.00
48 229 0.84
50 44 0.16
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:12008622 original size:94 final size:94
Alignment explanation
Indices: 12008424--12008646 Score: 238
Period size: 94 Copynumber: 2.4 Consensus size: 94
12008414 GGGTTATTGT
* *
12008424 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGATAGCCAGTGTAGGACCATG
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGATAGCCAGTGTAAGACCATG
* * ** *
12008489 TCTGGGACATGGCATTGGCATAGAGACGA
66 TCTAGGACACGGCATCAGCACAGAGACGA
* * * *
12008518 GTGCTAGTGTAAGACATGTCTAGGACATGCATCGG-C-TATGA-GAT-GTTTCAGTGTAAGACCA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGATAG--CCAGTGTAAGACCA
* *
12008579 TGTCTAGGACACGGCATCAGCACAGATATACTA
64 TGTCTAGGACACGGCATCAGCACAG--AGACGA
*
12008612 GAGCTTGTGTAAGACCATGTCTGGGACATGTCATC
1 GAGCTAGTGTAAGA-CATGTCTGGGACATG-CATC
12008647 AGCATCTTAC
Statistics
Matches: 107, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
90 1 0.01
91 3 0.03
92 35 0.33
93 1 0.01
94 49 0.46
95 14 0.13
96 4 0.04
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (94 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGATAGCCAGTGTAAGACCATG
TCTAGGACACGGCATCAGCACAGAGACGA
Found at i:12010201 original size:48 final size:47
Alignment explanation
Indices: 12010140--12010460 Score: 204
Period size: 46 Copynumber: 6.8 Consensus size: 47
12010130 CAGCCACATT
*
12010140 ATGAGAGCAAGTGTAAGACCATGTCTGGGACATGGCATCGAGATTGAG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCG-GATTGAG
* * *
12010188 ACGAGAGCTAGTGTAAGA--ATGTCTGGGACAT-GCATCGGCCTTAAG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-ATTGAG
* * *
12010233 ATGTA-AGTTAGTGTAAGA-CATGTCTGGGACAT-GCATTGGCTGTGAG
1 ATG-AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGAT-TGAG
* * * *
12010279 ATG-TA-TTAGTGTAAGACCATGTCTTGGACATGGCATTGGCACATAT-AG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG---AT-TGAG
* * * ** *
12010327 A-G-GTG-TCAGTGTAGGACCATATCTGGGACATGGCATCGGCACGGAT
1 ATGAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGG-ATTGAG
* *
12010373 ATGTGAGAGCTAGTGTAAGACTATGTTTGGGACATGGCATC-GACTT--G
1 A--TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGA-TTGAG
* * *
12010420 ATGGATGAGCCAGTGTAAAACCATGCCTGGGACATGGCATC
1 AT-GA-GAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
12010461 AGCATTATAC
Statistics
Matches: 219, Mismatches: 33, Indels: 43
0.74 0.11 0.15
Matches are distributed among these distances:
44 12 0.05
45 41 0.19
46 52 0.24
47 33 0.15
48 48 0.22
49 4 0.02
50 28 0.13
51 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.25
Consensus pattern (47 bp):
ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGATTGAG
Found at i:12010256 original size:46 final size:45
Alignment explanation
Indices: 12010100--12010310 Score: 180
Period size: 46 Copynumber: 4.6 Consensus size: 45
12010090 TTATTTGTAT
* * * *
12010100 GCTAGTGTAAGACATGTCTAGGACATGCATCAGC-CACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTTA-A-GATGAGA
* * * *
12010146 GCAAGTGTAAGACCATGTCTGGGACATGGCATCGAGATTGAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCG-GCTTAAGATGAGA
12010194 GCTAGTGTAAGA-ATGTCTGGGACATGCATCGGCCTTAAGATGTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-CTTAAGATG-AGA
* * * *
12010239 GTTAGTGTAAGACATGTCTGGGACATGCATTGGCTGTGAGATG-TA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCT-TAAGATGAGA
* *
12010284 -TTAGTGTAAGACCATGTCTTGGACATG
1 GCTAGTGTAAGA-CATGTCTGGGACATG
12010311 GCATTGGCAC
Statistics
Matches: 139, Mismatches: 16, Indels: 21
0.79 0.09 0.12
Matches are distributed among these distances:
44 12 0.09
45 41 0.29
46 50 0.36
47 13 0.09
48 21 0.15
49 2 0.01
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTTAAGATGAGA
Found at i:12010318 original size:46 final size:44
Alignment explanation
Indices: 12010149--12010310 Score: 175
Period size: 45 Copynumber: 3.5 Consensus size: 44
12010139 TATGAGAGCA
* * * *
12010149 AGTGTAAGACCATGTCTGGGACATGGCATCGAGATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG-GCTTGAGATG-TAGTT
*
12010197 AGTGTAAGA-ATGTCTGGGACATGCATCGGCCTTAAGATGTAAGTT
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CTTGAGATGT-AGTT
*
12010242 AGTGTAAGACATGTCTGGGACATGCATTGGCTGTGAGATGTA-TT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCT-TGAGATGTAGTT
*
12010286 AGTGTAAGACCATGTCTTGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
12010311 GCATTGGCAC
Statistics
Matches: 101, Mismatches: 8, Indels: 13
0.83 0.07 0.11
Matches are distributed among these distances:
44 12 0.12
45 41 0.41
46 39 0.39
48 9 0.09
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.27
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTTGAGATGTAGTT
Found at i:12012315 original size:41 final size:41
Alignment explanation
Indices: 12012104--12013105 Score: 1738
Period size: 41 Copynumber: 24.5 Consensus size: 41
12012094 CTACTCGCTC
* * * *
12012104 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACT--CGCACC
1 AATGCCTTCGGGACTTAGCCC-GAAACTAGTCACTAGCGCA-A
* *
12012144 AATGCCTTCGGGACTTAGCCCGTATA-TAGTAACT--CGCACA
1 AATGCCTTCGGGACTTAGCCCG-AAACTAGTCACTAGCGCA-A
* *
12012184 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACT-G-GCACA
1 AATGCCTTCGGGACTTAGCCC-GAAACTAGTCACTAGCGCA-A
* * ** * *
12012224 AATGCCTTCAGGACTTAGCCCGGATGTAATAACT--CGCACA
1 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCA-A
12012264 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
1 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
12012305 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
1 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
12012346 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
1 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
12012387 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
1 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
12012428 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
1 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
12012469 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
1 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
12012510 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
1 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
12012551 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
1 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
12012592 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
1 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
12012633 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
1 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
12012674 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
1 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
12012715 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
1 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
12012756 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
1 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
12012797 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
1 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
12012838 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
1 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
12012879 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
1 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
12012920 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
1 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
12012961 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
1 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
12013002 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
1 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
12013043 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
1 AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
12013084 AATGCCTTCGGGACTTAGCCCG
1 AATGCCTTCGGGACTTAGCCCG
12013106 GTTATCATCC
Statistics
Matches: 942, Mismatches: 13, Indels: 13
0.97 0.01 0.01
Matches are distributed among these distances:
39 2 0.00
40 133 0.14
41 803 0.85
42 4 0.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (41 bp):
AATGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGCAA
Found at i:12013808 original size:65 final size:65
Alignment explanation
Indices: 12013727--12014304 Score: 1156
Period size: 65 Copynumber: 8.9 Consensus size: 65
12013717 CCATCTCATG
12013727 TGGCCGAATATGCATGTCTATGTTGAGGCCAATTATATACTTAATACCACACATAAATATATAAT
1 TGGCCGAATATGCATGTCTATGTTGAGGCCAATTATATACTTAATACCACACATAAATATATAAT
12013792 TGGCCGAATATGCATGTCTATGTTGAGGCCAATTATATACTTAATACCACACATAAATATATAAT
1 TGGCCGAATATGCATGTCTATGTTGAGGCCAATTATATACTTAATACCACACATAAATATATAAT
12013857 TGGCCGAATATGCATGTCTATGTTGAGGCCAATTATATACTTAATACCACACATAAATATATAAT
1 TGGCCGAATATGCATGTCTATGTTGAGGCCAATTATATACTTAATACCACACATAAATATATAAT
12013922 TGGCCGAATATGCATGTCTATGTTGAGGCCAATTATATACTTAATACCACACATAAATATATAAT
1 TGGCCGAATATGCATGTCTATGTTGAGGCCAATTATATACTTAATACCACACATAAATATATAAT
12013987 TGGCCGAATATGCATGTCTATGTTGAGGCCAATTATATACTTAATACCACACATAAATATATAAT
1 TGGCCGAATATGCATGTCTATGTTGAGGCCAATTATATACTTAATACCACACATAAATATATAAT
12014052 TGGCCGAATATGCATGTCTATGTTGAGGCCAATTATATACTTAATACCACACATAAATATATAAT
1 TGGCCGAATATGCATGTCTATGTTGAGGCCAATTATATACTTAATACCACACATAAATATATAAT
12014117 TGGCCGAATATGCATGTCTATGTTGAGGCCAATTATATACTTAATACCACACATAAATATATAAT
1 TGGCCGAATATGCATGTCTATGTTGAGGCCAATTATATACTTAATACCACACATAAATATATAAT
12014182 TGGCCGAATATGCATGTCTATGTTGAGGCCAATTATATACTTAATACCACACATAAATATATAAT
1 TGGCCGAATATGCATGTCTATGTTGAGGCCAATTATATACTTAATACCACACATAAATATATAAT
12014247 TGGCCGAATATGCATGTCTATGTTGAGGCCAATTATATACTTAATACCACACATAAAT
1 TGGCCGAATATGCATGTCTATGTTGAGGCCAATTATATACTTAATACCACACATAAAT
12014305 GGCATACATT
Statistics
Matches: 513, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 513 1.00
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.32
Consensus pattern (65 bp):
TGGCCGAATATGCATGTCTATGTTGAGGCCAATTATATACTTAATACCACACATAAATATATAAT
Found at i:12015006 original size:242 final size:242
Alignment explanation
Indices: 12014581--12015063 Score: 957
Period size: 242 Copynumber: 2.0 Consensus size: 242
12014571 ACTTCACAAG
12014581 AATAAATCATTAACCAAATATAAACATATATCCAAAACACAAATCTTACCTACCATGTAATAAGC
1 AATAAATCATTAACCAAATATAAACATATATCCAAAACACAAATCTTACCTACCATGTAATAAGC
12014646 ATAAATCATACTCATGGATATACCATGGCCGATACCTCCAACAACACCAAATAAAAATATACTTC
66 ATAAATCATACTCATGGATATACCATGGCCGATACCTCCAACAACACCAAATAAAAATATACTTC
12014711 ATGGATCTAAGGTAGAACCAAGAAAGGAACTCATAGATATCAAGAAGTAAGCAAACTACCATTGT
131 ATGGATCTAAGGTAGAACCAAGAAAGGAACTCATAGATATCAAGAAGTAAGCAAACTACCATTGT
12014776 TCATCTAGATTTAGCATAAAACACAACCATCACCCTTATTAATCTCC
196 TCATCTAGATTTAGCATAAAACACAACCATCACCCTTATTAATCTCC
12014823 AATAAATCATTAACCAAATATAAACATATATCCAAAACACAAATCTTACCTACCATGTAATAAGC
1 AATAAATCATTAACCAAATATAAACATATATCCAAAACACAAATCTTACCTACCATGTAATAAGC
12014888 ATAAATCATACTCATGGATATACCATGGCCGATACCTCCAACAACACCAAATAAAAATATACTTC
66 ATAAATCATACTCATGGATATACCATGGCCGATACCTCCAACAACACCAAATAAAAATATACTTC
12014953 ATGGATCTAAGGTAGAACCAAGAAAGGAACTCATAGATATCAAGAAGTAAGCAAACTACCATTGT
131 ATGGATCTAAGGTAGAACCAAGAAAGGAACTCATAGATATCAAGAAGTAAGCAAACTACCATTGT
*
12015018 TCATCTAGATTTAGCATAAAACACAACCATCACCCTTATTATTCTC
196 TCATCTAGATTTAGCATAAAACACAACCATCACCCTTATTAATCTC
12015064 TATAGCCGAA
Statistics
Matches: 240, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
242 240 1.00
ACGTcount: A:0.44, C:0.23, G:0.09, T:0.24
Consensus pattern (242 bp):
AATAAATCATTAACCAAATATAAACATATATCCAAAACACAAATCTTACCTACCATGTAATAAGC
ATAAATCATACTCATGGATATACCATGGCCGATACCTCCAACAACACCAAATAAAAATATACTTC
ATGGATCTAAGGTAGAACCAAGAAAGGAACTCATAGATATCAAGAAGTAAGCAAACTACCATTGT
TCATCTAGATTTAGCATAAAACACAACCATCACCCTTATTAATCTCC
Found at i:12019004 original size:132 final size:134
Alignment explanation
Indices: 12018601--12019117 Score: 543
Period size: 132 Copynumber: 3.9 Consensus size: 134
12018591 TAGAAAACAC
* * * *
12018601 GAGTGAAATTCCGAAGAGATATTCGATTATTTTGAACAAATGGGAGATTGCAACCCAGCACGATA
1 GAGTGAAATTCCGAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATA
* * * * * **
12018666 GGGCACTATTCCCCGAATTGCCGAACACCGAACAT-TT-CTTTCGTTTTAAAGGGTTTTTAGAAA
66 GGGCACGATTCCGCGAATTGCCAAACATCGAACATCTTACCTTCGTTTTAAAGAATTTTTA-AAA
*
12018729 -ACGT
130 GACAT
* * * * * *
12018733 GAGTGAAATTCCGAAGGAATCTTCGATTATTTTGAACAAATGAAAAAGTGCAACCCCGCACGATA
1 GAGTGAAATTCCGAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATA
** * * * * *
12018798 GGATACGATT-CTCGTATTGCCAAACATCGAACATC--ACCTTTGTTTTAAAGGATTTTTAGAAG
66 GGGCACGATTCCGCGAATTGCCAAACATCGAACATCTTACCTTCGTTTTAAAGAATTTTTAAAAG
12018860 ACAT
131 ACAT
** * * *
12018864 GAGTGAAATTTTGAAGGGATATTCGATTATCTTGAACAAACGAGAAATTGCAACCTAGCACGTTA
1 GAGTGAAATTCCGAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATA
* * * **
12018929 GGGCATGATTCCGTGAATTGCCAAATATC-AA-ATCTTACCTTCGCCTTAAAGAATTTTTAAAAG
66 GGGCACGATTCCGCGAATTGCCAAACATCGAACATCTTACCTTCGTTTTAAAGAATTTTTAAAAG
12018992 ACAT
131 ACAT
* ** * * *
12018996 GGGTGAAATTTTGAAGGGATATTCGATCATTTTGAGA-AAACGAGAAATTGCAACCCAACACGTT
1 GAGTGAAATTCCGAAGGGATATTCGATTATTTTGA-ACAAACGAGAAATTGCAACCCAGCACGAT
* * *
12019060 AGGGCACAATTCCGCGAATTGCCAAATATC-AA-ATCTTGCCTTCGTTTTAAAGAATTTT
65 AGGGCACGATTCCGCGAATTGCCAAACATCGAACATCTTACCTTCGTTTTAAAGAATTTT
12019118 GAAATGAATA
Statistics
Matches: 324, Mismatches: 54, Indels: 14
0.83 0.14 0.04
Matches are distributed among these distances:
130 5 0.02
131 105 0.32
132 213 0.66
133 1 0.00
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (134 bp):
GAGTGAAATTCCGAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATA
GGGCACGATTCCGCGAATTGCCAAACATCGAACATCTTACCTTCGTTTTAAAGAATTTTTAAAAG
ACAT
Found at i:12019479 original size:14 final size:14
Alignment explanation
Indices: 12019460--12019489 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
12019450 AACACGACAC
12019460 AAAAATAATGGACT
1 AAAAATAATGGACT
*
12019474 AAAAATGATGGACT
1 AAAAATAATGGACT
12019488 AA
1 AA
12019490 CAATCAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.57, C:0.07, G:0.17, T:0.20
Consensus pattern (14 bp):
AAAAATAATGGACT
Found at i:12023306 original size:20 final size:20
Alignment explanation
Indices: 12023273--12023316 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
12023263 AGCACACGTA
* *
12023273 TTCATAAAAATTTAGAATTT
1 TTCATAAAAATTTACAACTT
* *
12023293 TTCATCAAACTTTACAACTT
1 TTCATAAAAATTTACAACTT
12023313 TTCA
1 TTCA
12023317 GTTTCATCCC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.39, C:0.16, G:0.02, T:0.43
Consensus pattern (20 bp):
TTCATAAAAATTTACAACTT
Found at i:12023412 original size:21 final size:21
Alignment explanation
Indices: 12023366--12023413 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 21
12023356 GTAAAAAGTT
*
12023366 ATTTATCTATCAAAAATCTTTC
1 ATTT-TCTATCAAAAATCTTTA
*
12023388 ATTTTCTATCATAAAT-TTCTA
1 ATTTTCTATCAAAAATCTT-TA
12023409 ATTTT
1 ATTTT
12023414 TAGCATATAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 2 0.09
21 17 0.74
22 4 0.17
ACGTcount: A:0.33, C:0.15, G:0.00, T:0.52
Consensus pattern (21 bp):
ATTTTCTATCAAAAATCTTTA
Found at i:12024917 original size:7 final size:8
Alignment explanation
Indices: 12024893--12024932 Score: 73
Period size: 8 Copynumber: 5.1 Consensus size: 8
12024883 AAAATTTTAT
12024893 TGTAAAAG
1 TGTAAAAG
12024901 TGTAAAAG
1 TGTAAAAG
12024909 TGT-AAAG
1 TGTAAAAG
12024916 TGTAAAAG
1 TGTAAAAG
12024924 TGTAAAAG
1 TGTAAAAG
12024932 T
1 T
12024933 TGCCTGCTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
7 7 0.23
8 24 0.77
ACGTcount: A:0.47, C:0.00, G:0.25, T:0.28
Consensus pattern (8 bp):
TGTAAAAG
Found at i:12024917 original size:15 final size:15
Alignment explanation
Indices: 12024897--12024929 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
12024887 TTTTATTGTA
12024897 AAAGTGTAAAAGTGT
1 AAAGTGTAAAAGTGT
12024912 AAAGTGTAAAAGTGT
1 AAAGTGTAAAAGTGT
12024927 AAA
1 AAA
12024930 AGTTGCCTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (15 bp):
AAAGTGTAAAAGTGT
Found at i:12026312 original size:40 final size:34
Alignment explanation
Indices: 12026272--12026340 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
12026262 CCAAGTATAT
12026272 GAATATGAAGTTTGTATTGGTATTTGGTTCTAAG
1 GAATATGAAGTTTGTATTGGTATTTGGTTCTAAG
*
12026306 GAATATGAAGTTTGTGTTGGTATTTGGTTCTAAG
1 GAATATGAAGTTTGTATTGGTATTTGGTTCTAAG
12026340 G
1 G
12026341 TATAAGTAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.25, C:0.03, G:0.29, T:0.43
Consensus pattern (34 bp):
GAATATGAAGTTTGTATTGGTATTTGGTTCTAAG
Found at i:12031310 original size:68 final size:69
Alignment explanation
Indices: 12031190--12031330 Score: 248
Period size: 68 Copynumber: 2.1 Consensus size: 69
12031180 CTTAATTTTC
*
12031190 ATAGTATTTCATGCATTCTGGTAAGTAATAAAGAATTGTTTGATATAGCATTATTGAGTTGATTG
1 ATAGTATTTCATGCATTCTGGTAAGTAATAAAGAAATGTTTGATATAGCATTATTGAGTTGATTG
12031255 CATG
66 CATG
* *
12031259 ATAG-ATTTCATGCATTCTGGTAAGTAATAAAGAAATGTTTGTTATATCATTATTGAGTTGATTG
1 ATAGTATTTCATGCATTCTGGTAAGTAATAAAGAAATGTTTGATATAGCATTATTGAGTTGATTG
12031323 CATG
66 CATG
12031327 ATAG
1 ATAG
12031331 CTAATTTAGT
Statistics
Matches: 69, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
68 65 0.94
69 4 0.06
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.40
Consensus pattern (69 bp):
ATAGTATTTCATGCATTCTGGTAAGTAATAAAGAAATGTTTGATATAGCATTATTGAGTTGATTG
CATG
Found at i:12050144 original size:45 final size:45
Alignment explanation
Indices: 12049967--12050144 Score: 177
Period size: 45 Copynumber: 4.0 Consensus size: 45
12049957 ATGCTATCTC
* * * * *
12049967 ATATCGATGCCACTGTCCCAGACAGGGTCTTGCTCG-AATC-TA-
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACTCGAAAACACAT
* * * *
12050009 ATA-CGATGTCAATGTCCCAGACATGGTCTTACAT-GTAACCACAC
1 ATATCGATGCCAATGTCCCAGACATGGTCTTAC-TCGAAAACACAT
* * *
12050053 ATATCGATGCCAACGTCCCAGACATGGTCTTACACGAAAACGCAT
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACTCGAAAACACAT
** *
12050098 ATATCGATGCCAATGTCCCAGATGTGGTCTTACTCGAAAATACAT
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACTCGAAAACACAT
12050143 AT
1 AT
12050145 CAAAATCCTA
Statistics
Matches: 111, Mismatches: 19, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
41 26 0.23
42 7 0.06
43 1 0.01
44 3 0.03
45 74 0.67
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (45 bp):
ATATCGATGCCAATGTCCCAGACATGGTCTTACTCGAAAACACAT
Found at i:12057015 original size:40 final size:40
Alignment explanation
Indices: 12056960--12057123 Score: 213
Period size: 40 Copynumber: 4.1 Consensus size: 40
12056950 CGGGATTTAT
* *
12056960 CCGGATATAACAACTCGCACAAATGCCTTCAGGTCTTAGC
1 CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
12057000 CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
* * * * *
12057040 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACATAGC
1 CCGGATAT-AGCAACTCGCACAAATGCCTTCGGGTCTTAGC
* * * *
12057080 CCGGATATAGCAACTCACACGAATGCCTTCGGATCTTAGT
1 CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
12057120 CCGG
1 CCGG
12057124 TTATCATTCG
Statistics
Matches: 106, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 102 0.96
41 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
Found at i:12064789 original size:25 final size:25
Alignment explanation
Indices: 12064753--12064808 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 25
12064743 TTTCTCCTAA
12064753 ATTTTAATTTTATTCAATTATCTAAT
1 ATTTTAATTTTATTCAATTAT-TAAT
* *
12064779 TTTTTAA-TTTATTGAATTATTAAT
1 ATTTTAATTTTATTCAATTATTAAT
12064803 ATTTTA
1 ATTTTA
12064809 TATTAATAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 9 0.33
25 12 0.44
26 6 0.22
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.61
Consensus pattern (25 bp):
ATTTTAATTTTATTCAATTATTAAT
Found at i:12073534 original size:49 final size:49
Alignment explanation
Indices: 12073356--12073535 Score: 177
Period size: 49 Copynumber: 3.7 Consensus size: 49
12073346 TATGTAGCTA
* * * * * *
12073356 GGTCACATGTGTAGTACTAAGTGCAAGCTACTATGCGCACCTGATAACT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGAGTACCAGATAATT
* * * *
12073405 --ACGATCAGGTGT-GTACTAAGTGCAGGCTACTACGAGTATCAGATAGTT
1 GGTC-A-CATGTGTAGTACTAAGTGCAGGCTACTACGAGTACCAGATAATT
* * * *
12073453 AGGTCACGTGTGTAGTACTAAGTGCAGACTACTACGTGTACCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGAGTACCAGATAATT
*
12073503 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
12073536 TGCATACTAG
Statistics
Matches: 104, Mismatches: 21, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
47 1 0.01
48 29 0.28
49 41 0.39
50 32 0.31
51 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGAGTACCAGATAATT
Found at i:12078671 original size:49 final size:47
Alignment explanation
Indices: 12078519--12078694 Score: 307
Period size: 47 Copynumber: 3.7 Consensus size: 47
12078509 ATGATAGTAT
12078519 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
12078566 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
12078613 GGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
12078662 GGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
12078695 CCCGAAGGGC
Statistics
Matches: 123, Mismatches: 3, Indels: 3
0.95 0.02 0.02
Matches are distributed among these distances:
47 79 0.64
49 40 0.33
50 4 0.03
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.30
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:12078687 original size:96 final size:95
Alignment explanation
Indices: 12078519--12078694 Score: 309
Period size: 96 Copynumber: 1.8 Consensus size: 95
12078509 ATGATAGTAT
12078519 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
12078584 ATGAATGTGA-AAGTGTATATATGTGATAA
66 ATGAATGTGATAAGTGTATATATGTGATAA
* *
12078613 GGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATG
12078678 TGATGAATGTGATAAGT
64 TGATGAATGTGATAAGT
12078695 CCCGAAGGGC
Statistics
Matches: 77, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
94 32 0.42
96 41 0.53
97 4 0.05
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.30
Consensus pattern (95 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
ATGAATGTGATAAGTGTATATATGTGATAA
Found at i:12078868 original size:37 final size:37
Alignment explanation
Indices: 12078812--12078890 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
12078802 CCGAGCTCTG
* * * *
12078812 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
* *
12078849 AAGACCCGATAACTTCGTGTGGAGATTATGTCTAGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
12078886 AAGAC
1 AAGAC
12078891 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
Found at i:12081253 original size:18 final size:19
Alignment explanation
Indices: 12081220--12081255 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
12081210 TTAAATTTAG
*
12081220 TAAATTAATTGAATTATGT
1 TAAATTAAATGAATTATGT
12081239 TAAATTAAATG-ATTATG
1 TAAATTAAATGAATTATG
12081256 GTTCCAAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (19 bp):
TAAATTAAATGAATTATGT
Found at i:12083525 original size:27 final size:27
Alignment explanation
Indices: 12083485--12083596 Score: 129
Period size: 27 Copynumber: 4.1 Consensus size: 27
12083475 AGGAAGCATC
*
12083485 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
12083512 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
12083539 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * * *
12083567 CCGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
12083593 CTGG
1 CTGG
12083597 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 7 0.10
27 49 0.67
28 17 0.23
ACGTcount: A:0.15, C:0.25, G:0.23, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:12083591 original size:54 final size:54
Alignment explanation
Indices: 12083485--12083596 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
12083475 AGGAAGCATC
* * *
12083485 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCCGGTGACTCTGCCACATATATCTGTT
* * *
12083539 CTGGTGGCTCTGCCACGATTATCTGTATCCGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCCGGTGACTCTGCCACATATATCTGTT
12083593 CTGG
1 CTGG
12083597 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.15, C:0.25, G:0.23, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCCGGTGACTCTGCCACATATATCTGTT
Found at i:12094271 original size:29 final size:29
Alignment explanation
Indices: 12094236--12094309 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
12094226 GTTGTGAGAT
* *
12094236 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
12094265 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
12094294 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
12094310 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:12094894 original size:40 final size:40
Alignment explanation
Indices: 12094620--12094880 Score: 287
Period size: 40 Copynumber: 6.5 Consensus size: 40
12094610 TCGAATGATG
* *
12094620 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATA
* * * * *
12094660 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCGTGCTAGTGA-TATA
*
12094700 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* *
12094740 TCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
12094780 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* * ** * * *
12094820 TTCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
12094860 TCCGGGCTAGGTCCCGAAGAG
1 TCCGGGCTAAGTCCCGAAGAG
12094881 TAATCATGAT
Statistics
Matches: 185, Mismatches: 32, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
39 1 0.01
40 165 0.89
41 19 0.10
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
Found at i:12101021 original size:27 final size:27
Alignment explanation
Indices: 12100981--12101092 Score: 138
Period size: 27 Copynumber: 4.1 Consensus size: 27
12100971 AGGAAGCGTC
*
12100981 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
12101008 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
12101035 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
12101063 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
12101089 CTGG
1 CTGG
12101093 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 8 0.11
27 49 0.65
28 18 0.24
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:12101087 original size:54 final size:54
Alignment explanation
Indices: 12100981--12101092 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
12100971 AGGAAGCGTC
* *
12100981 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
12101035 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
12101089 CTGG
1 CTGG
12101093 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:12107569 original size:79 final size:82
Alignment explanation
Indices: 12107458--12107642 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
12107448 GCTACTCGTT
* * *
12107458 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
12107521 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* * **
12107538 CAAATACCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
12107601 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
12107618 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
12107643 CATCATTCAA
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.60
80 33 0.37
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:12107642 original size:40 final size:40
Alignment explanation
Indices: 12107439--12107642 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
12107429 CGGAATTTAA
** *
12107439 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
12107479 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
12107519 CCGGATTTAGTAACTCGCACAAATACCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
12107558 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
12107598 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
12107638 CCGGA
1 CCGGA
12107643 CATCATTCAA
Statistics
Matches: 137, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 91 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:12115011 original size:79 final size:82
Alignment explanation
Indices: 12114900--12115084 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
12114890 GCTACTCGTT
* * *
12114900 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
12114963 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
12114980 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
12115043 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
12115060 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
12115085 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:12115084 original size:40 final size:40
Alignment explanation
Indices: 12114881--12115084 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
12114871 CGGAATTTAA
** *
12114881 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
12114921 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
12114961 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
12115000 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
12115040 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
12115080 CCGGA
1 CCGGA
12115085 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:12116682 original size:43 final size:43
Alignment explanation
Indices: 12116621--12116705 Score: 152
Period size: 43 Copynumber: 2.0 Consensus size: 43
12116611 AAACATTTCG
*
12116621 GTGACTCGGTTTAGCGGTCCCAAAACCACTTCCCGACTAGGGA
1 GTGACTCGGATTAGCGGTCCCAAAACCACTTCCCGACTAGGGA
*
12116664 GTGACTCGGATTAGCGGTCCCGAAACCACTTCCCGACTAGGG
1 GTGACTCGGATTAGCGGTCCCAAAACCACTTCCCGACTAGGG
12116706 TCAATTTTGG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (43 bp):
GTGACTCGGATTAGCGGTCCCAAAACCACTTCCCGACTAGGGA
Found at i:12136204 original size:39 final size:40
Alignment explanation
Indices: 12136133--12136276 Score: 156
Period size: 39 Copynumber: 3.6 Consensus size: 40
12136123 GCTCCTCGTT
* *
12136133 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
*
12136173 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
12136212 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCA
12136253 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
12136277 CATCATTCAA
Statistics
Matches: 90, Mismatches: 8, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
38 2 0.02
39 47 0.52
40 33 0.37
41 8 0.09
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:12149985 original size:29 final size:29
Alignment explanation
Indices: 12149944--12150014 Score: 115
Period size: 29 Copynumber: 2.4 Consensus size: 29
12149934 CACTAGGCCT
* *
12149944 AATCACATTTATATGGCCTATTAGGCCCA
1 AATCACATTTATATGGCCCATCAGGCCCA
12149973 AATCACATTTATATGGCCCATCAGGCCCA
1 AATCACATTTATATGGCCCATCAGGCCCA
*
12150002 ATTCACATTTATA
1 AATCACATTTATA
12150015 GTCATGCTCA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.32, C:0.25, G:0.11, T:0.31
Consensus pattern (29 bp):
AATCACATTTATATGGCCCATCAGGCCCA
Found at i:12153757 original size:28 final size:29
Alignment explanation
Indices: 12153674--12153769 Score: 131
Period size: 29 Copynumber: 3.3 Consensus size: 29
12153664 GAAAGCATGT
*
12153674 ATATGAATGTGATTTGGGCCTAATGGGTC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
**
12153703 GCATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
12153732 ATATGAATGAGA-TTGGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
12153760 ATATGCATGT
1 ATATGAATGT
12153770 ATGTAGACTT
Statistics
Matches: 58, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
28 23 0.40
29 35 0.60
ACGTcount: A:0.24, C:0.14, G:0.32, T:0.30
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:12161674 original size:25 final size:25
Alignment explanation
Indices: 12161640--12161705 Score: 105
Period size: 25 Copynumber: 2.6 Consensus size: 25
12161630 GAGGAAGTGC
*
12161640 AAAAGGGCTTTGCCCCAGTTTATCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
12161665 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
* *
12161690 AAAAAGGCTTTACCCC
1 AAAAGGGCTTTGCCCC
12161706 GATTATTAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:12161711 original size:24 final size:25
Alignment explanation
Indices: 12161640--12161722 Score: 96
Period size: 25 Copynumber: 3.4 Consensus size: 25
12161630 GAGGAAGTGC
* *
12161640 AAAAGGGCTTTGCCCCAGTTTATCG
1 AAAAAGGCTTTGCCCCAGTTTATCA
*
12161665 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAAGGCTTTGCCCCAGTTTATCA
* * *
12161690 AAAAAGGCTTTACCCC-GATTATTA
1 AAAAAGGCTTTGCCCCAGTTTATCA
*
12161714 AAAGAGGCT
1 AAAAAGGCT
12161723 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
24 14 0.27
25 38 0.73
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (25 bp):
AAAAAGGCTTTGCCCCAGTTTATCA
Found at i:12168987 original size:20 final size:21
Alignment explanation
Indices: 12168948--12168995 Score: 71
Period size: 20 Copynumber: 2.3 Consensus size: 21
12168938 ATTTTGATAT
*
12168948 ACATGATTTGATATGATATGC
1 ACATGATATGATATGATATGC
*
12168969 ACATGATAT-ATATGTTATGC
1 ACATGATATGATATGATATGC
12168989 ACATGAT
1 ACATGAT
12168996 GTATTCATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 17 0.68
21 8 0.32
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.38
Consensus pattern (21 bp):
ACATGATATGATATGATATGC
Found at i:12169144 original size:24 final size:25
Alignment explanation
Indices: 12169042--12169137 Score: 158
Period size: 25 Copynumber: 3.9 Consensus size: 25
12169032 GGAGGAAGTG
12169042 CAAAAA-GGCTTTGCCCCAGTTTAC
1 CAAAAAGGGCTTTGCCCCAGTTTAC
* *
12169066 CGAAAAGGGCTTTGCCCTAGTTTAC
1 CAAAAAGGGCTTTGCCCCAGTTTAC
*
12169091 CAAAAAGGGCTTTGCCCCAGTTTAT
1 CAAAAAGGGCTTTGCCCCAGTTTAC
12169116 CAAAAAGGGCTTTGCCCCAGTT
1 CAAAAAGGGCTTTGCCCCAGTT
12169138 ATTAAAAGAG
Statistics
Matches: 66, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
24 5 0.08
25 61 0.92
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (25 bp):
CAAAAAGGGCTTTGCCCCAGTTTAC
Found at i:12169150 original size:24 final size:24
Alignment explanation
Indices: 12169042--12169150 Score: 130
Period size: 25 Copynumber: 4.4 Consensus size: 24
12169032 GGAGGAAGTG
*
12169042 CAAAAAGGCTTTGCCCCAGTTTAC
1 CAAAAAGGCTTTGCCCCAGTTTAT
* * *
12169066 CGAAAAGGGCTTTGCCCTAGTTTAC
1 C-AAAAAGGCTTTGCCCCAGTTTAT
12169091 CAAAAAGGGCTTTGCCCCAGTTTAT
1 CAAAAA-GGCTTTGCCCCAGTTTAT
12169116 CAAAAAGGGCTTTGCCCCAG-TTAT
1 CAAAAA-GGCTTTGCCCCAGTTTAT
*
12169140 TAAAAGAGGCT
1 CAAAA-AGGCT
12169151 AGGCCTCCAG
Statistics
Matches: 76, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
24 17 0.22
25 59 0.78
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (24 bp):
CAAAAAGGCTTTGCCCCAGTTTAT
Found at i:12169161 original size:50 final size:50
Alignment explanation
Indices: 12169054--12169162 Score: 123
Period size: 50 Copynumber: 2.2 Consensus size: 50
12169044 AAAAGGCTTT
* * **
12169054 GCCCCAGTTTACCGAAAAGGGCTTTGCCCTAGTTTACCAAAAAGGGCTTT
1 GCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTACCAAAAAGGGCTAG
* **
12169104 GCCCCAGTTTATCAAAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAG
1 GCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTACCAAAAAG-GGCTAG
12169153 GCCTCCAGTT
1 GCC-CCAGTT
12169163 ATATGATAAA
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
48 5 0.10
49 10 0.20
50 35 0.70
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.26
Consensus pattern (50 bp):
GCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTACCAAAAAGGGCTAG
Found at i:12169419 original size:30 final size:32
Alignment explanation
Indices: 12169383--12169447 Score: 98
Period size: 31 Copynumber: 2.1 Consensus size: 32
12169373 TGATATGAGT
12169383 TGTGAATTAT-AAAAGGCTTCAGCCCAGTA-A
1 TGTGAATTATGAAAAGGCTTCAGCCCAGTATA
* *
12169413 TGTGAATTATGAAGAGGCTTCGGCCCAGTATA
1 TGTGAATTATGAAAAGGCTTCAGCCCAGTATA
12169445 TGT
1 TGT
12169448 TGAAATTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
30 10 0.32
31 17 0.55
32 4 0.13
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (32 bp):
TGTGAATTATGAAAAGGCTTCAGCCCAGTATA
Found at i:12199645 original size:118 final size:118
Alignment explanation
Indices: 12199437--12199675 Score: 460
Period size: 118 Copynumber: 2.0 Consensus size: 118
12199427 AAACATGCAA
12199437 TGCAGTGCACCCACCCCAATAATCCATCCACTACACACCAACTCCATCCCCCAGTACACACCATG
1 TGCAGTGCACCCACCCCAATAATCCATCCACTACACACCAACTCCATCCCCCAGTACACACCATG
12199502 TGGGGATATAAATATCGACCCACCCATCCGATACACTCCAATGGTAGCCCGAT
66 TGGGGATATAAATATCGACCCACCCATCCGATACACTCCAATGGTAGCCCGAT
12199555 TGCAGTGCACCCACCCCAATAATCCATCCACTACACACCAACTCCATCCCCCAGTACACACCATG
1 TGCAGTGCACCCACCCCAATAATCCATCCACTACACACCAACTCCATCCCCCAGTACACACCATG
* *
12199620 TGGGGATATAAATATCGACCCACCCATCCGATACACTCCAATGGTATCCCGGT
66 TGGGGATATAAATATCGACCCACCCATCCGATACACTCCAATGGTAGCCCGAT
12199673 TGC
1 TGC
12199676 GGAACTACCT
Statistics
Matches: 119, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
118 119 1.00
ACGTcount: A:0.30, C:0.39, G:0.13, T:0.18
Consensus pattern (118 bp):
TGCAGTGCACCCACCCCAATAATCCATCCACTACACACCAACTCCATCCCCCAGTACACACCATG
TGGGGATATAAATATCGACCCACCCATCCGATACACTCCAATGGTAGCCCGAT
Found at i:12200252 original size:29 final size:29
Alignment explanation
Indices: 12200187--12200329 Score: 121
Period size: 29 Copynumber: 5.0 Consensus size: 29
12200177 TACATACACG
* *
12200187 CATATGGCTCA-CTAGGCCCAA-TCTCATT
1 CATATGGCCCATC-AGGCCCAATTCACATT
* * * *
12200215 TATATGGCCTATCTGGCCCAATTCACGTT
1 CATATGGCCCATCAGGCCCAATTCACATT
12200244 CATATGGCCCATCAGGCCCAATTCACATT
1 CATATGGCCCATCAGGCCCAATTCACATT
* * * * *
12200273 CATATAGCCCATTAAGCCTAA-TCTCATT
1 CATATGGCCCATCAGGCCCAATTCACATT
* * * *
12200301 TATATTGCCCATCTGGCCCAAATCACATT
1 CATATGGCCCATCAGGCCCAATTCACATT
12200330 ATGTTTATGC
Statistics
Matches: 90, Mismatches: 22, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
28 36 0.40
29 54 0.60
ACGTcount: A:0.27, C:0.31, G:0.13, T:0.30
Consensus pattern (29 bp):
CATATGGCCCATCAGGCCCAATTCACATT
Found at i:12204852 original size:29 final size:29
Alignment explanation
Indices: 12204781--12204928 Score: 149
Period size: 29 Copynumber: 5.2 Consensus size: 29
12204771 ACCCCTACAT
*
12204781 ACATGCATATGGCCCA-CTAGGCCCAA-TC
1 ACATTCATATGGCCCATC-AGGCCCAATTC
* * * *
12204809 TCATTTATATGGCCCATCCGGCCCAATTT
1 ACATTCATATGGCCCATCAGGCCCAATTC
*
12204838 ACGTTCATATGGCCCATCAGGCCCAATTC
1 ACATTCATATGGCCCATCAGGCCCAATTC
*
12204867 ACATTCATATGGCCCATTAGGCCCAA-TC
1 ACATTCATATGGCCCATCAGGCCCAATTC
* * * * * *
12204895 TCATTTATATAGCCTATCTGGCCCAAATC
1 ACATTCATATGGCCCATCAGGCCCAATTC
12204924 ACATT
1 ACATT
12204929 ATGTTCATGC
Statistics
Matches: 98, Mismatches: 19, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
28 42 0.43
29 56 0.57
ACGTcount: A:0.26, C:0.32, G:0.14, T:0.28
Consensus pattern (29 bp):
ACATTCATATGGCCCATCAGGCCCAATTC
Found at i:12205017 original size:9 final size:9
Alignment explanation
Indices: 12205003--12205041 Score: 60
Period size: 9 Copynumber: 4.3 Consensus size: 9
12204993 GGGCCCACCA
12205003 GCCCATTTG
1 GCCCATTTG
*
12205012 GCCCATTTA
1 GCCCATTTG
*
12205021 GCCCATTCG
1 GCCCATTTG
12205030 GCCCATTTG
1 GCCCATTTG
12205039 GCC
1 GCC
12205042 TATTCACAGC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.13, C:0.38, G:0.21, T:0.28
Consensus pattern (9 bp):
GCCCATTTG
Found at i:12214823 original size:40 final size:40
Alignment explanation
Indices: 12214765--12215022 Score: 315
Period size: 40 Copynumber: 6.5 Consensus size: 40
12214755 TGGATGATAA
*
12214765 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-TAT
* * * *
12214805 CCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAT
* ** * *
12214845 CCCGGCTAAGTTTCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAT
* *
12214885 CTGGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAT
**
12214925 CCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAT
* * *
12214965 CCGGGCTAAGACTCGAAGGCATTTGTGCGAGTTG-CTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTATAT
*
12215005 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
12215023 TACTTGGGTT
Statistics
Matches: 187, Mismatches: 29, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
39 14 0.07
40 171 0.91
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAT
Found at i:12214981 original size:120 final size:119
Alignment explanation
Indices: 12214766--12215022 Score: 354
Period size: 120 Copynumber: 2.2 Consensus size: 119
12214756 GGATGATAAC
**
12214766 CGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCAGGCTAAGTCCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCAGGCTAAGTCCCGAAGGCATTCAT
* **
12214831 GCGAGTTACCATATCCCGGCTAAGTTTCGAAGGCATTTGTGCAAGTTACTATAT
66 GCGAGTGACCATATCCCGGCTAAGACTCGAAGGCATTTGTGCAAGTTACTATAT
* * *
12214885 CTGGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACTA-TATCCGGGCTAAGTCCCGAAGGCATTC
1 C-GGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-TCCAGGCTAAGTCCCGAAGGCATTC
* * * * *
12214949 ATGCTAGTGACTATATCCGGGCTAAGACTCGAAGGCATTTGTGCGAGTTGCTATAT
64 ATGCGAGTGACCATATCCCGGCTAAGACTCGAAGGCATTTGTGCAAGTTACTATAT
* *
12215005 CCGGCTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
12215023 TACTTGGGTT
Statistics
Matches: 120, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
119 16 0.13
120 104 0.87
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (119 bp):
CGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCAGGCTAAGTCCCGAAGGCATTCAT
GCGAGTGACCATATCCCGGCTAAGACTCGAAGGCATTTGTGCAAGTTACTATAT
Found at i:12220975 original size:28 final size:27
Alignment explanation
Indices: 12220895--12220981 Score: 113
Period size: 27 Copynumber: 3.2 Consensus size: 27
12220885 CAGCATGGCT
* *
12220895 ACCAG-AACAGATATTGTGATAGAGTC
1 ACCAGAAACAGATATTGTGGTAGAGCC
*
12220921 ACCAGATACAGATATTGTGGTAGAGCC
1 ACCAGAAACAGATATTGTGGTAGAGCC
* *
12220948 ACCAGAAACAGATATTTGTGGCATAGCC
1 ACCAGAAACAGATA-TTGTGGTAGAGCC
12220976 ACCAGA
1 ACCAGA
12220982 CCGCTTCCTC
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
26 5 0.09
27 31 0.58
28 17 0.32
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.21
Consensus pattern (27 bp):
ACCAGAAACAGATATTGTGGTAGAGCC
Done.