Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 41 of 313
Found at i:13945399 original size:60 final size:60
Alignment explanation
Indices: 13945306--13945420 Score: 230
Period size: 60 Copynumber: 1.9 Consensus size: 60
13945296 ATCTTTGTTG
13945306 TTGATACGAACTCGTCTCGTGATGTTTTGAGTCGTATGTGTTGCCCAATCGTGAACCAAT
1 TTGATACGAACTCGTCTCGTGATGTTTTGAGTCGTATGTGTTGCCCAATCGTGAACCAAT
13945366 TTGATACGAACTCGTCTCGTGATGTTTTGAGTCGTATGTGTTGCCCAATCGTGAA
1 TTGATACGAACTCGTCTCGTGATGTTTTGAGTCGTATGTGTTGCCCAATCGTGAA
13945421 TTGAGTAAGG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 55 1.00
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.36
Consensus pattern (60 bp):
TTGATACGAACTCGTCTCGTGATGTTTTGAGTCGTATGTGTTGCCCAATCGTGAACCAAT
Found at i:13951020 original size:13 final size:12
Alignment explanation
Indices: 13951004--13951060 Score: 80
Period size: 12 Copynumber: 4.8 Consensus size: 12
13950994 AAAAAAACCG
13951004 AAAAAAAATTCA
1 AAAAAAAATTCA
13951016 AAAAAAAATTCGA
1 AAAAAAAATTC-A
*
13951029 AAAACAAATTC-
1 AAAAAAAATTCA
*
13951040 AAAAAAAATTGA
1 AAAAAAAATTCA
13951052 AAAAAAAAT
1 AAAAAAAAT
13951061 GATTTATGCA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
11 9 0.22
12 20 0.50
13 11 0.28
ACGTcount: A:0.74, C:0.07, G:0.04, T:0.16
Consensus pattern (12 bp):
AAAAAAAATTCA
Found at i:13951031 original size:36 final size:36
Alignment explanation
Indices: 13950991--13951060 Score: 97
Period size: 36 Copynumber: 1.9 Consensus size: 36
13950981 ATACAAGTTT
13950991 GAAAAA-AAAACCGAAAAAAAATTCAAAAAAAAATTC
1 GAAAAACAAAACC-AAAAAAAATTCAAAAAAAAATTC
** *
13951027 GAAAAACAAATTCAAAAAAAATTGAAAAAAAAAT
1 GAAAAACAAAACCAAAAAAAATTCAAAAAAAAAT
13951061 GATTTATGCA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
36 26 0.87
37 4 0.13
ACGTcount: A:0.73, C:0.09, G:0.06, T:0.13
Consensus pattern (36 bp):
GAAAAACAAAACCAAAAAAAATTCAAAAAAAAATTC
Found at i:13951056 original size:25 final size:24
Alignment explanation
Indices: 13950992--13951058 Score: 95
Period size: 24 Copynumber: 2.9 Consensus size: 24
13950982 TACAAGTTTG
*
13950992 AAAAAAAAA-CCGAAAAAAAATTC
1 AAAAAAAAATTCGAAAAAAAATTC
13951015 AAAAAAAAATTCGAAAAACAAATTC
1 AAAAAAAAATTCGAAAAA-AAATTC
13951040 -AAAAAAAATT-GAAAAAAAA
1 AAAAAAAAATTCGAAAAAAAA
13951059 ATGATTTATG
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
22 3 0.07
23 15 0.37
24 17 0.41
25 6 0.15
ACGTcount: A:0.75, C:0.09, G:0.04, T:0.12
Consensus pattern (24 bp):
AAAAAAAAATTCGAAAAAAAATTC
Found at i:13954162 original size:23 final size:22
Alignment explanation
Indices: 13954111--13954162 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
13954101 CCTCGTCTTT
*
13954111 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
13954133 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
13954156 TTCTTTT
1 TTCTTTT
13954163 TCAATTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:13956866 original size:15 final size:15
Alignment explanation
Indices: 13956846--13956875 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
13956836 TATAGACACG
13956846 GGCGTGTGTCTCAGC
1 GGCGTGTGTCTCAGC
13956861 GGCGTGTGTCTCAGC
1 GGCGTGTGTCTCAGC
13956876 CGTGTACGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.07, C:0.27, G:0.40, T:0.27
Consensus pattern (15 bp):
GGCGTGTGTCTCAGC
Found at i:13956879 original size:13 final size:14
Alignment explanation
Indices: 13956847--13956880 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
13956837 ATAGACACGG
13956847 GCGTGTGTCTCAGC
1 GCGTGTGTCTCAGC
13956861 GGCGTGTGTCTCAGC
1 -GCGTGTGTCTCAGC
13956876 -CGTGT
1 GCGTGT
13956881 ACGACACATG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.26
15 14 0.74
ACGTcount: A:0.06, C:0.26, G:0.38, T:0.29
Consensus pattern (14 bp):
GCGTGTGTCTCAGC
Found at i:13959455 original size:46 final size:46
Alignment explanation
Indices: 13959303--13959525 Score: 179
Period size: 46 Copynumber: 4.8 Consensus size: 46
13959293 CGGGCAAGTT
* *
13959303 GCCGATGCCATATTCCAGACATGGTCTTACACTGGCTATCATCACAGAG
1 GCCGATGCCATGTTCCAGACATGGTCTTACACTGGC-A-CATCTC-GAG
** * * *
13959352 GTTGATGCCATGTCCCAGACATGGTCTTACACTGACACATTTCGTA-
1 GCCGATGCCATGTTCCAGACATGGTCTTACACTGGCACATCTCG-AG
* * *
13959398 GCCGAT-ACATGTACCAGACAT-GTCTTACACTGGCTTACGTCTCGAG
1 GCCGATGCCATGTTCCAGACATGGTCTTACACTGGC--ACATCTCGAG
* * * * *
13959444 GCCGATG-CATGTTCCAAACAT-GTCTTACACTAGCACTTGTCTCAAT
1 GCCGATGCCATGTTCCAGACATGGTCTTACACTGGCAC--ATCTCGAG
*
13959490 GCCGATGCCATG-TCCTAGTCATGGTCTTACACTGGC
1 GCCGATGCCATGTTCC-AGACATGGTCTTACACTGGC
13959526 TCTCATAATG
Statistics
Matches: 142, Mismatches: 22, Indels: 21
0.77 0.12 0.11
Matches are distributed among these distances:
44 14 0.10
45 14 0.10
46 57 0.40
47 13 0.09
48 13 0.09
49 31 0.22
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (46 bp):
GCCGATGCCATGTTCCAGACATGGTCTTACACTGGCACATCTCGAG
Found at i:13967675 original size:44 final size:43
Alignment explanation
Indices: 13967536--13967689 Score: 143
Period size: 44 Copynumber: 3.6 Consensus size: 43
13967526 ATATACAACA
** * * * *
13967536 CCAATGTCCCAGATGTGGTCTTACATGTAATAA-AAAATCGTTG
1 CCAATGTCCCAGACATGGTCTTACACGTAA-AATAGATTCGATG
* * * *
13967579 CCACTATCCCAGACAGGGTCTTACACG--AAATCAGATACGATG
1 CCAATGTCCCAGACATGGTCTTACACGTAAAAT-AGATTCGATG
** *
13967621 CTGATGTCCCAGATATGGTCTTACACGTAAAATAGTATTCGATG
1 CCAATGTCCCAGACATGGTCTTACACGTAAAATAG-ATTCGATG
13967665 CCAATGTCCCAGACATGGTCTTACA
1 CCAATGTCCCAGACATGGTCTTACA
13967690 TGAATTCACA
Statistics
Matches: 86, Mismatches: 20, Indels: 9
0.75 0.17 0.08
Matches are distributed among these distances:
40 2 0.02
41 1 0.01
42 27 0.31
43 23 0.27
44 33 0.38
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (43 bp):
CCAATGTCCCAGACATGGTCTTACACGTAAAATAGATTCGATG
Found at i:13979900 original size:30 final size:30
Alignment explanation
Indices: 13979815--13979911 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 30
13979805 TAAACTAAAA
* * *
13979815 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCATGAGCTGAAGT
* * * * * *
13979845 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCATGAGCTGAAGT
13979875 TGAGCTAAGGTTTAGCTCATGAGCTGAA-T
1 TGAGCTAAGGTTTAGCTCATGAGCTGAAGT
13979904 ATGAGCTA
1 -TGAGCTA
13979912 GGAGTGAGCT
Statistics
Matches: 52, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
29 1 0.02
30 51 0.98
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCATGAGCTGAAGT
Found at i:13985586 original size:122 final size:120
Alignment explanation
Indices: 13985371--13985595 Score: 387
Period size: 122 Copynumber: 1.9 Consensus size: 120
13985361 GCAAAATAAC
* **
13985371 CATGAGAATGAGAATAGTAATGTCATGGGTATGAGGTTTTCCTAATCTCGATTTAACACGGAATG
1 CATGAGAATGAGAATAGTAATGTCATGGGAATGAGGTTTTCCTAATCTCGATTTAACACAAAATG
13985436 TATGATAACTAACCTAAGAATGCAAATTAAATGATAGACGTTGGCATGGCAATAG
66 TATGATAACTAACCTAAGAATGCAAATTAAATGATAGACGTTGGCATGGCAATAG
* *
13985491 CATGAGAATGAGCATAGTAATGTCATGGGAATGATGTTTTCCTAATAACTCGATTTAACACAAAA
1 CATGAGAATGAGAATAGTAATGTCATGGGAATGAGGTTTTCCTAAT--CTCGATTTAACACAAAA
13985556 TGTATGATAACTAACCTAAGAATGCAAATTAAATGATAGA
64 TGTATGATAACTAACCTAAGAATGCAAATTAAATGATAGA
13985596 ATAATAAGCA
Statistics
Matches: 98, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
120 43 0.44
122 55 0.56
ACGTcount: A:0.39, C:0.12, G:0.20, T:0.28
Consensus pattern (120 bp):
CATGAGAATGAGAATAGTAATGTCATGGGAATGAGGTTTTCCTAATCTCGATTTAACACAAAATG
TATGATAACTAACCTAAGAATGCAAATTAAATGATAGACGTTGGCATGGCAATAG
Found at i:14000876 original size:79 final size:80
Alignment explanation
Indices: 14000716--14000940 Score: 246
Period size: 79 Copynumber: 2.8 Consensus size: 80
14000706 TTGAATGATG
* * * * * * *
14000716 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGACTAAGTCTCGAAGGCATTTGTGCGAA-TTACTATAACCGGGCTAAG-TCCCGAAGGCAT
14000779 TTGTGCGAGATACTAAA
64 TTGTGCGAGATACTAAA
*
14000796 TCCGGACTAAGATC-CGAAGGCATTTGTGCGAGA-TACTA-ATTCCGGGCTAAG-CCCGAAGGCA
1 TCCGGACTAAG-TCTCGAAGGCATTTGTGCGA-ATTACTATA-ACCGGGCTAAGTCCCGAAGGCA
*
14000857 TTTGTGCGAGTTACTAAA
63 TTTGTGCGAGATACTAAA
** * *
14000875 TCCGGGTTAAGTCTCGAAGGCATTTGTGTGAATTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGACTAAGTCTCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
14000940 G
66 G
14000941 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 11, Indels: 18
0.81 0.07 0.12
Matches are distributed among these distances:
78 3 0.02
79 66 0.53
80 45 0.36
81 10 0.08
82 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGACTAAGTCTCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:14000911 original size:40 final size:40
Alignment explanation
Indices: 14000716--14000940 Score: 248
Period size: 40 Copynumber: 5.7 Consensus size: 40
14000706 TTGAATGATG
* * *
14000716 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAA
*
14000756 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
* *
14000796 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
*
14000836 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
14000875 TCCGGGTTAAGTCTCGAAGGCATTTGTGTGA-ATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTA-AA
*
14000916 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
14000941 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
39 35 0.21
40 115 0.71
41 12 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:14000932 original size:119 final size:120
Alignment explanation
Indices: 14000716--14000940 Score: 282
Period size: 119 Copynumber: 1.9 Consensus size: 120
14000706 TTGAATGATG
*
14000716 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
14000781 GTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
66 GTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
* * * **
14000836 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCTCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGATC-CGAAGGCAT
* * *
14000898 TTGTGTGA-ATTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTG
64 TTGTGCGAGA-TACTA-AATCCGGACTAAGAT-CCGAAGGCATTTG
14000941 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
118 4 0.04
119 67 0.74
120 20 0.22
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:14000972 original size:79 final size:78
Alignment explanation
Indices: 14000769--14000973 Score: 195
Period size: 79 Copynumber: 2.6 Consensus size: 78
14000759 GGACTAAGAT
** **
14000769 CCGAAGGCATTTGTGCGAGAT-ACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACT
1 CCGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAAG-TCCGAAGGCATTTGTGCGAGATACT
*
14000833 AATTCCGGGCTAAGC
64 AATACCGGGCTAAGC
** * *
14000848 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCTCGAAGGCATTTGTGTGA-ATTACT
1 CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTC-CGAAGGCATTTGTGCGAGA-TACT
*
14000912 -ATAACCGGGCTATGTC
64 AAT-ACCGGGCTAAG-C
* *
14000928 CCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTT-AAGTCCGAAGG
14000974 TACGTGATTT
Statistics
Matches: 109, Mismatches: 10, Indels: 14
0.82 0.08 0.11
Matches are distributed among these distances:
78 6 0.06
79 74 0.68
80 29 0.27
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (78 bp):
CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCGAAGGCATTTGTGCGAGATACTAA
TACCGGGCTAAGC
Found at i:14003374 original size:19 final size:21
Alignment explanation
Indices: 14003338--14003401 Score: 60
Period size: 20 Copynumber: 3.0 Consensus size: 21
14003328 AGAAAAGAAG
14003338 AAAAACAAAAAGATGAGTGAT
1 AAAAACAAAAAGATGAGTGAT
*
14003359 AAAAA-AAAGAGA-GAGTGATT
1 AAAAACAAAAAGATGAGTGA-T
* *
14003379 CAAAAGAAAAAGAAATGAGTGAT
1 AAAAACAAAAAG--ATGAGTGAT
14003402 GAGATTGAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
19 6 0.17
20 11 0.31
21 10 0.29
23 2 0.06
24 6 0.17
ACGTcount: A:0.61, C:0.03, G:0.22, T:0.14
Consensus pattern (21 bp):
AAAAACAAAAAGATGAGTGAT
Found at i:14003953 original size:40 final size:40
Alignment explanation
Indices: 14003895--14003974 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 40
14003885 GACGAGCTAA
* *
14003895 GTGGCGCGAGTTTATTTTCAAAAATCGACCTTAAGAGCGG
1 GTGGCGCAAGTCTATTTTCAAAAATCGACCTTAAGAGCGG
* * *
14003935 GTGGCGCAAGTCTGTTTTCAAAAATTGATCTTAAGAGCGG
1 GTGGCGCAAGTCTATTTTCAAAAATCGACCTTAAGAGCGG
14003975 TTATCACCAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (40 bp):
GTGGCGCAAGTCTATTTTCAAAAATCGACCTTAAGAGCGG
Found at i:14008348 original size:18 final size:20
Alignment explanation
Indices: 14008307--14008350 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
14008297 TGGGCTAAGG
14008307 ACACGGGCGTGTCCAGAGCC
1 ACACGGGCGTGTCCAGAGCC
*
14008327 ACACGGGCGTGT-GAGA-CC
1 ACACGGGCGTGTCCAGAGCC
14008345 ACACGG
1 ACACGG
14008351 CCTACCCACA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 8 0.35
19 3 0.13
20 12 0.52
ACGTcount: A:0.23, C:0.32, G:0.36, T:0.09
Consensus pattern (20 bp):
ACACGGGCGTGTCCAGAGCC
Found at i:14023707 original size:24 final size:24
Alignment explanation
Indices: 14023640--14023714 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
14023630 GCTATCTGGT
14023640 GCTCCCTGA-TAATAACTCTT-TGGA
1 GCTCCCTGATTAA-AACTCTTAT-GA
* * *
14023664 GTTACCTG-TT-AAGCTC-TATGA
1 GCTCCCTGATTAAAACTCTTATGA
14023685 GCTCCCTGATTAAAACTCTTATGA
1 GCTCCCTGATTAAAACTCTTATGA
14023709 GTCTCC
1 G-CTCC
14023715 TGTTTAGCCC
Statistics
Matches: 39, Mismatches: 6, Indels: 11
0.70 0.11 0.20
Matches are distributed among these distances:
21 9 0.23
22 7 0.18
23 6 0.15
24 13 0.33
25 4 0.10
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35
Consensus pattern (24 bp):
GCTCCCTGATTAAAACTCTTATGA
Found at i:14027891 original size:30 final size:30
Alignment explanation
Indices: 14027857--14027952 Score: 88
Period size: 30 Copynumber: 3.2 Consensus size: 30
14027847 TAAACTAAAA
14027857 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * * *
14027887 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
* *
14027917 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
14027947 TGAGCT
1 TGAGCT
14027953 CGGTTTAGCT
Statistics
Matches: 49, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
29 2 0.04
30 41 0.84
31 6 0.12
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:14029574 original size:25 final size:25
Alignment explanation
Indices: 14029546--14029593 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
14029536 CTATAACGTG
* * *
14029546 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATAACCATTATACCCCTAGGTA
14029571 AAAATAACCATTATACCCCTAGG
1 AAAATAACCATTATACCCCTAGG
14029594 GATATGTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.38, C:0.25, G:0.12, T:0.25
Consensus pattern (25 bp):
AAAATAACCATTATACCCCTAGGTA
Found at i:14029646 original size:10 final size:10
Alignment explanation
Indices: 14029633--14029671 Score: 60
Period size: 10 Copynumber: 3.8 Consensus size: 10
14029623 CTATTTTATA
14029633 CATGATATGC
1 CATGATATGC
14029643 CATGATATGC
1 CATGATATGC
14029653 ACATGATATGC
1 -CATGATATGC
*
14029664 CATTATAT
1 CATGATAT
14029672 ATTCATATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
10 17 0.63
11 10 0.37
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.33
Consensus pattern (10 bp):
CATGATATGC
Found at i:14029658 original size:21 final size:21
Alignment explanation
Indices: 14029632--14029671 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
14029622 ACTATTTTAT
14029632 ACATGATATGCCATGATATGC
1 ACATGATATGCCATGATATGC
*
14029653 ACATGATATGCCATTATAT
1 ACATGATATGCCATGATAT
14029672 ATTCATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (21 bp):
ACATGATATGCCATGATATGC
Found at i:14029751 original size:25 final size:25
Alignment explanation
Indices: 14029717--14029786 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
14029707 GAGGAAGTGC
*
14029717 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
14029742 AAAAGGGCTTTGCCCTAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
14029767 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
14029787 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:14029799 original size:24 final size:24
Alignment explanation
Indices: 14029716--14029799 Score: 107
Period size: 25 Copynumber: 3.4 Consensus size: 24
14029706 GGAGGAAGTG
*
14029716 CAAAAGGGCTTTGCCCCAGTTTAC
1 CAAAAGGGCTTTGCCCCAGTTTAT
*
14029740 CGAAAAGGGCTTTGCCCTAGTTTAT
1 C-AAAAGGGCTTTGCCCCAGTTTAT
14029765 CAAAAAGGGCTTTGCCCCAG-TTAT
1 C-AAAAGGGCTTTGCCCCAGTTTAT
*
14029789 TAAAAGAGGCT
1 CAAAAG-GGCT
14029800 AGGCCTCCAG
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
23 5 0.09
24 9 0.17
25 39 0.74
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.26
Consensus pattern (24 bp):
CAAAAGGGCTTTGCCCCAGTTTAT
Found at i:14033664 original size:16 final size:15
Alignment explanation
Indices: 14033640--14033670 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
14033630 AACTGTTTTA
14033640 TTACAAATTTCACTT
1 TTACAAATTTCACTT
14033655 TTACATAATTTCACTT
1 TTACA-AATTTCACTT
14033671 ACTCCATTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.32, C:0.19, G:0.00, T:0.48
Consensus pattern (15 bp):
TTACAAATTTCACTT
Found at i:14048277 original size:11 final size:11
Alignment explanation
Indices: 14048261--14048299 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
14048251 CATAAATCAC
14048261 TTTTTTTTATT
1 TTTTTTTTATT
*
14048272 TTTTTTTTGA-A
1 TTTTTTTT-ATT
14048283 TTTTTTTTATT
1 TTTTTTTTATT
14048294 TTTTTT
1 TTTTTT
14048300 AACTTGTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
10 1 0.04
11 22 0.92
12 1 0.04
ACGTcount: A:0.10, C:0.00, G:0.03, T:0.87
Consensus pattern (11 bp):
TTTTTTTTATT
Found at i:14050459 original size:13 final size:13
Alignment explanation
Indices: 14050441--14050467 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
14050431 GCTCGGCAGG
14050441 GACACGCTCATGT
1 GACACGCTCATGT
14050454 GACACGCTCATGT
1 GACACGCTCATGT
14050467 G
1 G
14050468 CTATTACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.22
Consensus pattern (13 bp):
GACACGCTCATGT
Found at i:14054110 original size:15 final size:15
Alignment explanation
Indices: 14054090--14054154 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
14054080 GTATCTTGGG
14054090 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
14054105 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
14054120 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
*
14054135 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
14054149 TTTCTT
1 TTTCTT
14054155 GTTATCTTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 12 0.28
15 27 0.63
16 4 0.09
ACGTcount: A:0.09, C:0.14, G:0.14, T:0.63
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:14054122 original size:30 final size:31
Alignment explanation
Indices: 14054086--14054154 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
14054076 TATCGTATCT
14054086 TGGGTTTCTT-TAT-TCTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCT-TGGATTTCTTTATTC
14054116 TGGGTTT-TTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCTTGGATTTCTTTATTC
*
14054146 -GGTTTTCTT
1 TGGGTTTCTT
14054155 GTTATCTTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 7 0.20
30 27 0.77
31 1 0.03
ACGTcount: A:0.09, C:0.13, G:0.17, T:0.61
Consensus pattern (31 bp):
TGGGTTTCTTCTATCTTGGATTTCTTTATTC
Found at i:14057871 original size:50 final size:50
Alignment explanation
Indices: 14057706--14057981 Score: 190
Period size: 51 Copynumber: 5.5 Consensus size: 50
14057696 CTGGTATGCA
* * * * * *
14057706 TAGTAACCTGCACTTAGTACTAGACATGCGAC-CAACAATC-GGTGCACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACATAACTATCTGGTACAAG
* * * * *
14057754 TAGTAGCCTACACTTAGTACTACACACGTGA-TTGAAGT-TCTCGGGTATGC-A-
1 TAGTAGCCTGCACTTAGTACTACACATGCGACAT-AACTATCT--GGTA--CAAG
*
14057805 TAGTAGCCTGCACTTAGTACTACACATGCGACATAACTATCTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACATAACTATCTGGTACAAG
* * * * * * * *
14057855 TAGTAGTCTGCACTTAGTACTACACACGTGA-TTGAAGTTGTCGGGTACGCA-
1 TAGTAGCCTGCACTTAGTACTACACATGCGACAT-AA-CTATCTGGTAC-AAG
* * * * *
14057906 TAGTAGCCTGTACTTGGTACTACATATTCGACCTAACTATCTGGTACAAG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACATAACTATCTGGTACAAG
*
14057956 TAGTAGCTTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
14057982 CGTGACCTAA
Statistics
Matches: 171, Mismatches: 41, Indels: 30
0.71 0.17 0.12
Matches are distributed among these distances:
48 29 0.17
49 4 0.02
50 64 0.37
51 68 0.40
52 5 0.03
53 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACATAACTATCTGGTACAAG
Found at i:14057899 original size:101 final size:99
Alignment explanation
Indices: 14057698--14057986 Score: 400
Period size: 101 Copynumber: 2.9 Consensus size: 99
14057688 GACGCTATCT
* * * * * *
14057698 GGTATGCATAGTAACCTGCACTTAGTACTAGACATGCGACCAACAATC-GGTGCACGTAGTAGCC
1 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACTAACTATCTGGTACAAGTAGTAG-C
*
14057762 TACACTTAGTACTACACACGTGATTGAAGTTCTCG
65 TGCACTTAGTACTACACACGTGATTGAAGTTCTCG
*
14057797 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACATAACTATCTGGTACATGTAGTAGT
1 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGAC-TAACTATCTGGTACAAGTAGTAG-
*
14057862 CTGCACTTAGTACTACACACGTGATTGAAGTTGTCG
64 CTGCACTTAGTACTACACACGTGATTGAAGTTCTCG
* * * * *
14057898 GGTACGCATAGTAGCCTGTACTTGGTACTACATATTCGACCTAACTATCTGGTACAAGTAGTAGC
1 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGA-CTAACTATCTGGTACAAGTAGTAGC
14057963 TTGCACTTAGTACTACACACGTGA
65 -TGCACTTAGTACTACACACGTGA
14057987 CCTAAAACCA
Statistics
Matches: 171, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
99 38 0.22
100 7 0.04
101 125 0.73
102 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (99 bp):
GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACTAACTATCTGGTACAAGTAGTAGCT
GCACTTAGTACTACACACGTGATTGAAGTTCTCG
Found at i:14057989 original size:50 final size:50
Alignment explanation
Indices: 14057706--14057991 Score: 203
Period size: 50 Copynumber: 5.7 Consensus size: 50
14057696 CTGGTATGCA
* * * * * * *
14057706 TAGTAACCTGCACTTAGTACTAGACATGCGACC-AACAATC-GGTGCACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGGTACAAG
* * *
14057754 TAGTAGCCTACACTTAGTACTACACACGTGA-TTGAAGT-TCTCGGGTATGC-A-
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT-AACTATCT--GGTA--CAAG
* * * *
14057805 TAGTAGCCTGCACTTAGTACTACACATGCGACATAACTATCTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGGTACAAG
* * * * * *
14057855 TAGTAGTCTGCACTTAGTACTACACACGTGA-TTGAAGTTGTCGGGTACGCA-
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT-AA-CTATCTGGTAC-AAG
* * * *
14057906 TAGTAGCCTGTACTTGGTACTACATA-TTCGACCTAACTATCTGGTACAAG
1 TAGTAGCCTGCACTTAGTACTACACACGT-GACCTAACTATCTGGTACAAG
*
14057956 TAGTAGCTTGCACTTAGTACTACACACGTGACCTAA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
14057992 AACCATTTAA
Statistics
Matches: 180, Mismatches: 40, Indels: 34
0.71 0.16 0.13
Matches are distributed among these distances:
48 29 0.16
49 4 0.02
50 72 0.40
51 69 0.38
52 5 0.03
53 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGGTACAAG
Found at i:14058009 original size:101 final size:101
Alignment explanation
Indices: 14057704--14058034 Score: 294
Period size: 101 Copynumber: 3.3 Consensus size: 101
14057694 ATCTGGTATG
* * * * * * * *
14057704 CATAGTAACCTGCACTTAGTACTAGACATGCGAC-CAACAATC-GGTGCACGTAGTAGCCTACAC
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACATAACTATCTGGTACAAGTAGTAGTCTGCAC
* *** ** **
14057767 TTAGTACTACACACGTGATTGAAGTTC-TCGGGTATG
66 TTAGTACTACACACGTGACT-AAAACCATCGGAAACA
*
14057803 CATAGTAGCCTGCACTTAGTACTACACATGCGACATAACTATCTGGTACATGTAGTAGTCTGCAC
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACATAACTATCTGGTACAAGTAGTAGTCTGCAC
* * **** ** *
14057868 TTAGTACTACACACGTGATTGAAGTTGTCGGGTACG
66 TTAGTACTACACACGTGACTAAAACCATCGGAAACA
* * * * *
14057904 CATAGTAGCCTGTACTTGGTACTACATATTCGACCTAACTATCTGGTACAAGTAGTAG-CTTGCA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACATAACTATCTGGTACAAGTAGTAGTC-TGCA
**
14057968 CTTAGTACTACACACGTGACCTAAAACCAT-TTAAACA
65 CTTAGTACTACACACGTGA-CTAAAACCATCGGAAACA
*
14058005 CATAGTAGCCTGCACATAGTACTACACATG
1 CATAGTAGCCTGCACTTAGTACTACACATG
14058035 TGTTCTCACA
Statistics
Matches: 192, Mismatches: 35, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
99 32 0.17
100 9 0.05
101 147 0.77
102 4 0.02
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (101 bp):
CATAGTAGCCTGCACTTAGTACTACACATGCGACATAACTATCTGGTACAAGTAGTAGTCTGCAC
TTAGTACTACACACGTGACTAAAACCATCGGAAACA
Found at i:14063493 original size:34 final size:33
Alignment explanation
Indices: 14063450--14063516 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 33
14063440 CGTATCAGTA
* *
14063450 ACAGTTCAGTTTCTGT-TAAGGCCTTAGCCCATT
1 ACAGTTCAGTATCAGTGT-AGGCCTTAGCCCATT
*
14063483 ACAGTATCAGTATCAGTGTGGGCCTTAGCCCATT
1 ACAGT-TCAGTATCAGTGTAGGCCTTAGCCCATT
14063517 TCAATAATAG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
33 5 0.17
34 23 0.79
35 1 0.03
ACGTcount: A:0.22, C:0.24, G:0.21, T:0.33
Consensus pattern (33 bp):
ACAGTTCAGTATCAGTGTAGGCCTTAGCCCATT
Found at i:14068032 original size:30 final size:30
Alignment explanation
Indices: 14067937--14068033 Score: 88
Period size: 30 Copynumber: 3.2 Consensus size: 30
14067927 AGCTCACTCC
*
14067937 TAGCTC-ACTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTT-AGCTCACGAGCTAAACCT
* * * * * *
14067967 TAGCTCAACTTCAGCTTAGGAGTTTAATCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
* * *
14067997 CAGCTCAACTTTAGCTCACAAGCTAAAGCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
14068027 TAGCTCA
1 TAGCTCA
14068034 TTTTAGTTTA
Statistics
Matches: 50, Mismatches: 16, Indels: 2
0.74 0.24 0.03
Matches are distributed among these distances:
30 46 0.92
31 4 0.08
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAACCT
Found at i:14072802 original size:260 final size:260
Alignment explanation
Indices: 14072336--14072805 Score: 922
Period size: 260 Copynumber: 1.8 Consensus size: 260
14072326 GTCTTGACAA
14072336 AGAAGTGAAACTTCCTGAATGATGAATGAATTCCTTGAACTGAAGTTTTGGAGAATAATCAGCGT
1 AGAAGTGAAACTTCCTGAATGATGAATGAATTCCTTGAACTGAAGTTTTGGAGAATAATCAGCGT
14072401 GAGAGTGGAGGAGGATACTCTGGTGGTGGTGGAGGTTCATTAGTCCATAAGTCCTACACCAAAAG
66 GAGAGTGGAGGAGGATACTCTGGTGGTGGTGGAGGTTCATTAGTCCATAAGTCCTACACCAAAAG
*
14072466 AATATTATATCTGGTGGTAGCTATGGTCGTGGTCGAGCAGGACATGGCAGTCCTGGAGAACCTTT
131 AATATTATATCTGGTGGTAGCTATGGTCGTGGTCGAGCAGGACATGGCAGTCCTAGAGAACCTTT
*
14072531 CCCGGTGGAGTTTTTCAAAGGTAGATATATTGAAAAAGATAGATTTATAACCATAAGATAGGAAG
196 CCCGATGGAGTTTTTCAAAGGTAGATATATTGAAAAAGATAGATTTATAACCATAAGATAGGAAG
14072596 AGAAGTGAAACTTCCTGAATGATGAATGAATTCCTTGAACTGAAGTTTTGGAGAATAATCAGCGT
1 AGAAGTGAAACTTCCTGAATGATGAATGAATTCCTTGAACTGAAGTTTTGGAGAATAATCAGCGT
14072661 GAGAGTGGAGGAGGATACTCTGGTGGTGGTGGAGGTTCATTAGTCCATAAGTCCTACACCAAAAG
66 GAGAGTGGAGGAGGATACTCTGGTGGTGGTGGAGGTTCATTAGTCCATAAGTCCTACACCAAAAG
14072726 AATATTATATCTGGTGGTAGCTATGGTCGTGGTCGAGCAGGACATGGCAGTCCTAGAGAACCTTT
131 AATATTATATCTGGTGGTAGCTATGGTCGTGGTCGAGCAGGACATGGCAGTCCTAGAGAACCTTT
14072791 CCCGATGGAGTTTTT
196 CCCGATGGAGTTTTT
14072806 AGTTCCTATG
Statistics
Matches: 208, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
260 208 1.00
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (260 bp):
AGAAGTGAAACTTCCTGAATGATGAATGAATTCCTTGAACTGAAGTTTTGGAGAATAATCAGCGT
GAGAGTGGAGGAGGATACTCTGGTGGTGGTGGAGGTTCATTAGTCCATAAGTCCTACACCAAAAG
AATATTATATCTGGTGGTAGCTATGGTCGTGGTCGAGCAGGACATGGCAGTCCTAGAGAACCTTT
CCCGATGGAGTTTTTCAAAGGTAGATATATTGAAAAAGATAGATTTATAACCATAAGATAGGAAG
Found at i:14074753 original size:20 final size:19
Alignment explanation
Indices: 14074730--14074794 Score: 51
Period size: 20 Copynumber: 3.3 Consensus size: 19
14074720 AAGCTCAAAC
14074730 GAGCTAAAGTAAGCTAAATT
1 GAGCTAAAGT-AGCTAAATT
14074750 GAGCTCAAACG-AGCTAAATT
1 GAGCT-AAA-GTAGCTAAATT
* * * *
14074770 AAGCTCATGTGAGCTAAATC
1 GAGCTAAAGT-AGCTAAATT
14074790 GAGCT
1 GAGCT
14074795 GGGAAAAACT
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 30 0.83
21 3 0.08
22 1 0.03
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (19 bp):
GAGCTAAAGTAGCTAAATT
Found at i:14076609 original size:33 final size:33
Alignment explanation
Indices: 14076571--14076633 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
14076561 GATTACTCAC
14076571 TTCACTCG-TTTCTTTT-ATAGACTCTCTTTCTTT
1 TTCACTCGATTTCTTTTCA-AG-CTCTCTTTCTTT
*
14076604 TTCACTTGATTTCTTTTCAAGCTCTCTTTC
1 TTCACTCGATTTCTTTTCAAGCTCTCTTTC
14076634 AATTTCTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
33 16 0.59
34 10 0.37
35 1 0.04
ACGTcount: A:0.13, C:0.25, G:0.06, T:0.56
Consensus pattern (33 bp):
TTCACTCGATTTCTTTTCAAGCTCTCTTTCTTT
Found at i:14076660 original size:21 final size:21
Alignment explanation
Indices: 14076631--14076686 Score: 51
Period size: 21 Copynumber: 2.7 Consensus size: 21
14076621 CAAGCTCTCT
*
14076631 TTCAATTTCTTTTTTCGCTTT-
1 TTCATTTTCTTTTTTC-CTTTC
* ** *
14076652 TTCTTTTTCAATTTTCTTTTC
1 TTCATTTTCTTTTTTCCTTTC
14076673 TTCATTTTCTTTTT
1 TTCATTTTCTTTTT
14076687 CTCTCACTTT
Statistics
Matches: 26, Mismatches: 8, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
20 3 0.12
21 23 0.88
ACGTcount: A:0.09, C:0.18, G:0.02, T:0.71
Consensus pattern (21 bp):
TTCATTTTCTTTTTTCCTTTC
Found at i:14076679 original size:14 final size:14
Alignment explanation
Indices: 14076630--14076686 Score: 57
Period size: 14 Copynumber: 4.1 Consensus size: 14
14076620 TCAAGCTCTC
14076630 TTTCAA-TTTCTTT
1 TTTCAATTTTCTTT
**
14076643 TTTCGCTTTT-TCTT
1 TTTCAATTTTCT-TT
14076657 TTTCAATTTTCTTT
1 TTTCAATTTTCTTT
14076671 TCTTC-ATTTTCTTT
1 T-TTCAATTTTCTTT
14076685 TT
1 TT
14076687 CTCTCACTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
13 6 0.17
14 26 0.72
15 4 0.11
ACGTcount: A:0.09, C:0.18, G:0.02, T:0.72
Consensus pattern (14 bp):
TTTCAATTTTCTTT
Found at i:14076746 original size:18 final size:18
Alignment explanation
Indices: 14076648--14076751 Score: 84
Period size: 18 Copynumber: 5.6 Consensus size: 18
14076638 TCTTTTTTCG
14076648 CTTTTTCTTTTTCAATTTT
1 CTTTTTCTTTTTC-ATTTT
* *
14076667 CTTTTCTTCATTTTCTTTTT
1 C-TTT-TTCTTTTTCATTTT
* **
14076687 CTCTCACTTTTTCGA-TTT
1 CTTTTTCTTTTTC-ATTTT
* *
14076705 CTTTTTCTTTTGCAATTT
1 CTTTTTCTTTTTCATTTT
*
14076723 CTTTTTCTTTTTCGTTTT
1 CTTTTTCTTTTTCATTTT
*
14076741 CTTTTTGTTTT
1 CTTTTTCTTTT
14076752 CTTTCAATTT
Statistics
Matches: 66, Mismatches: 15, Indels: 9
0.73 0.17 0.10
Matches are distributed among these distances:
17 1 0.02
18 46 0.70
19 3 0.05
20 8 0.12
21 8 0.12
ACGTcount: A:0.07, C:0.18, G:0.04, T:0.71
Consensus pattern (18 bp):
CTTTTTCTTTTTCATTTT
Found at i:14076768 original size:6 final size:6
Alignment explanation
Indices: 14076648--14076755 Score: 74
Period size: 6 Copynumber: 17.7 Consensus size: 6
14076638 TCTTTTTTCG
* * * **
14076648 CTTTTT CTTTTT CAATTTT CTTTTCTT CATTTT CTTTTT CTCTCA CTTTTT
1 CTTTTT CTTTTT C-TTTTT C-TTT-TT CTTTTT CTTTTT CTTTTT CTTTTT
** * ** *
14076699 CGATTT CTTTTT CTTTTG CAATTT CTTTTT CTTTTT CGTTTT CTTTTT
1 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT
*
14076747 -GTTTT CTTT
1 CTTTTT CTTT
14076756 CAATTTCTTT
Statistics
Matches: 74, Mismatches: 25, Indels: 6
0.70 0.24 0.06
Matches are distributed among these distances:
5 4 0.05
6 58 0.78
7 9 0.12
8 3 0.04
ACGTcount: A:0.06, C:0.19, G:0.04, T:0.71
Consensus pattern (6 bp):
CTTTTT
Found at i:14077948 original size:9 final size:9
Alignment explanation
Indices: 14077934--14077963 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
14077924 TTCCAACAAA
14077934 ATTTTTTTT
1 ATTTTTTTT
14077943 ATTTTTTTT
1 ATTTTTTTT
14077952 GATTTTTTTT
1 -ATTTTTTTT
14077962 AT
1 AT
14077964 GTTACGAACC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.13, C:0.00, G:0.03, T:0.83
Consensus pattern (9 bp):
ATTTTTTTT
Found at i:14082932 original size:49 final size:49
Alignment explanation
Indices: 14082860--14083096 Score: 278
Period size: 49 Copynumber: 4.8 Consensus size: 49
14082850 TGAGGGCACG
* *
14082860 TGTGTAGTACTAAGTGCAGGCTACTATATGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCACA
* ** * *
14082909 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTTGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-TT-GGTCACA
* * * ** *
14082960 TGTGTAGTAATAAGTGCAGGCTACTACGTGTATCAGATGGTTTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT-AATTGGTCACA
* * *
14083010 TGTGTAGTACTAAGTGCA-GCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCACA
* *
14083058 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
14083097 GCTTCGGGTA
Statistics
Matches: 157, Mismatches: 27, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
48 25 0.16
49 69 0.44
50 25 0.16
51 38 0.24
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCACA
Found at i:14083032 original size:100 final size:98
Alignment explanation
Indices: 14082856--14083083 Score: 287
Period size: 100 Copynumber: 2.3 Consensus size: 98
14082846 ATTGTGAGGG
* *
14082856 CACGTGTGTAGTACTAAGTGCAGGCTACTATATGTACCAGATAATTGGTCGCATGTGTAGTACTA
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCACATGTGTAGTACTA
* **
14082921 AGTGCAGGCTACTATGCGTACTTGATAACTTCGAT
66 AGTGCAGGCTACTACGCGTACCGGATAA-TT-GAT
* * * ** *
14082956 CACGTGTGTAGTAATAAGTGCAGGCTACTACGTGTATCAGATGGTTTGGTCACGTGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGAT-AATTGGTCACATGTGTAGTACT
* *
14083021 AAGTGCA-GCTACTACGTGTACCGGATAATTGGT
65 AAGTGCAGGCTACTACGCGTACCGGATAATTGAT
* *
14083054 CGCATGTGTAGTACTAAGTGCAGGCTACTA
1 CACGTGTGTAGTACTAAGTGCAGGCTACTA
14083084 TGCGTACTAG
Statistics
Matches: 111, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
98 29 0.26
99 2 0.02
100 55 0.50
101 25 0.23
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (98 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCACATGTGTAGTACTA
AGTGCAGGCTACTACGCGTACCGGATAATTGAT
Found at i:14085820 original size:15 final size:16
Alignment explanation
Indices: 14085802--14085835 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
14085792 TCTCGTACCA
14085802 TGGATTTCTTTA-TCT
1 TGGATTTCTTTATTCT
14085817 TGGATTTCTTTATTCT
1 TGGATTTCTTTATTCT
14085833 TGG
1 TGG
14085836 CTTCTCTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.12, C:0.12, G:0.18, T:0.59
Consensus pattern (16 bp):
TGGATTTCTTTATTCT
Found at i:14088665 original size:49 final size:50
Alignment explanation
Indices: 14088585--14088817 Score: 308
Period size: 49 Copynumber: 4.7 Consensus size: 50
14088575 AGCTATTGTG
*
14088585 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
14088635 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * * **
14088685 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
14088735 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
14088785 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
14088818 TGCGTACTAG
Statistics
Matches: 159, Mismatches: 22, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
49 73 0.46
50 47 0.30
51 39 0.25
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:14090356 original size:44 final size:44
Alignment explanation
Indices: 14090301--14090393 Score: 177
Period size: 44 Copynumber: 2.1 Consensus size: 44
14090291 TAATGGTGAT
*
14090301 TACTCAAAACTTACCTCGGATATTTTGAACAGTTGTGGATAGGC
1 TACTTAAAACTTACCTCGGATATTTTGAACAGTTGTGGATAGGC
14090345 TACTTAAAACTTACCTCGGATATTTTGAACAGTTGTGGATAGGC
1 TACTTAAAACTTACCTCGGATATTTTGAACAGTTGTGGATAGGC
14090389 TACTT
1 TACTT
14090394 GATTGCTTTC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 48 1.00
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.34
Consensus pattern (44 bp):
TACTTAAAACTTACCTCGGATATTTTGAACAGTTGTGGATAGGC
Found at i:14094117 original size:64 final size:63
Alignment explanation
Indices: 14094012--14094219 Score: 193
Period size: 67 Copynumber: 3.2 Consensus size: 63
14094002 CATCATGTGT
14094012 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTACAAG--A-TA--ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
14094077 TAG
61 TAG
** * * * * * *
14094080 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACAAGATA-ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGT
14094145 AG
62 AG
** * * * *
14094147 ACAAGAGAGCTACAAGATAAACTAGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-G
1 ACAAGAGAGCTACAAGATAATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
14094209 TACAAGAGAGC
1 -ACAAGAGAGC
14094220 CGAACTATAT
Statistics
Matches: 114, Mismatches: 22, Indels: 13
0.77 0.15 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.17
64 21 0.18
65 10 0.09
66 20 0.18
67 29 0.25
68 14 0.12
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.22
Consensus pattern (63 bp):
ACAAGAGAGCTACAAGATAATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
Found at i:14096440 original size:16 final size:15
Alignment explanation
Indices: 14096414--14096443 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
14096404 ATATGATCTA
14096414 GCTTTAAATATGAAC
1 GCTTTAAATATGAAC
14096429 GCTTTGAAATATGAA
1 GCTTT-AAATATGAA
14096444 TAAAATTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.33
Consensus pattern (15 bp):
GCTTTAAATATGAAC
Found at i:14102164 original size:46 final size:46
Alignment explanation
Indices: 14101998--14102173 Score: 162
Period size: 46 Copynumber: 3.8 Consensus size: 46
14101988 TGTAACCCGC
* * * *
14101998 CCATAAGTGAACTCGAACTCAACTCAACGAGCTT-GGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTTGCAT
* * ** * *
14102044 CCATGAGTGAAATTAGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* * *
14102094 -C-TCA-CGAACTCGGACTCAATTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
14102137 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
14102174 TGCCCAGATA
Statistics
Matches: 101, Mismatches: 21, Indels: 16
0.73 0.15 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 4 0.04
46 56 0.55
47 25 0.25
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:14102165 original size:93 final size:93
Alignment explanation
Indices: 14102006--14102177 Score: 247
Period size: 93 Copynumber: 1.8 Consensus size: 93
14101996 GCCCATAAGT
* * * *
14102006 GAACTCGAACTCAACTCAACGAGCTTGGGCGTTCGCATCCATGAGTGAAATTAGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTTGGACATTCGCATCCATAAGTGAAATCAGACTCAACTCAA
14102071 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * * *
14102099 GAACTCGGACTCAATTCAACGAG-TTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGAACTCAACTCAACGAGCTT-GGACATTCGCATCCATAAGTGAAATCAGACTCAACTCA
14102163 ACGAGTTCGGATGCC
65 ACGAGTTCGGATGCC
14102178 CAGATATCCC
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
92 2 0.03
93 67 0.97
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTTGGACATTCGCATCCATAAGTGAAATCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:14102192 original size:46 final size:46
Alignment explanation
Indices: 14102059--14102192 Score: 107
Period size: 46 Copynumber: 2.9 Consensus size: 46
14102049 AGTGAAATTA
* * * *
14102059 GACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA-CGAACTCG
1 GACTCAACTCAACGAGTTCGGATGCCCAG--ATATCCCAGTGAACTCG
* ** *
14102106 GACTCAATTCAACGAGTTCGGA----CATTTGCATCCATAAGTGAACTCG
1 GACTCAACTCAACGAGTTCGGATGCCCAGAT--ATCC--CAGTGAACTCG
14102152 GACTCAACTCAACGAGTTCGGATGCCCAGATATCCCAGTGA
1 GACTCAACTCAACGAGTTCGGATGCCCAGATATCCCAGTGA
14102193 CATGTCACCT
Statistics
Matches: 66, Mismatches: 12, Indels: 19
0.68 0.12 0.20
Matches are distributed among these distances:
43 4 0.06
45 1 0.02
46 33 0.50
47 21 0.32
48 4 0.06
50 3 0.05
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
GACTCAACTCAACGAGTTCGGATGCCCAGATATCCCAGTGAACTCG
Found at i:14105210 original size:43 final size:43
Alignment explanation
Indices: 14105162--14105266 Score: 147
Period size: 43 Copynumber: 2.4 Consensus size: 43
14105152 TCACACCAAG
* *
14105162 GGTCTTACACGAAATCATAATACGATGCCAATGTCCCAAACAT
1 GGTCTTACACGTAATCATAATACAATGCCAATGTCCCAAACAT
* * * *
14105205 GGTCTTCCACGTCATCTTAATACAATGCCAATGTCCCAGACAT
1 GGTCTTACACGTAATCATAATACAATGCCAATGTCCCAAACAT
*
14105248 GGTCTTACATGTAATCATA
1 GGTCTTACACGTAATCATA
14105267 TCTAGATAAC
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 52 1.00
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (43 bp):
GGTCTTACACGTAATCATAATACAATGCCAATGTCCCAAACAT
Found at i:14107032 original size:81 final size:82
Alignment explanation
Indices: 14106936--14107113 Score: 236
Period size: 81 Copynumber: 2.2 Consensus size: 82
14106926 AATACTCGAT
* * *
14106936 ATCTCGCACACTAAGTGTCGTACATAG-CTGAAGCTATCTC-AAATCACACACTAAGTGCTATAT
1 ATCTCGCACACTAAGTGCCATACATAGTC-GAAGCTATCTCGAAATCACACACTAAGTGCCATAT
14106999 ATAGCTAAAGCTATCTCG
65 ATAGCTAAAGCTATCTCG
* ** * *
14107017 ATCTCGCACACTAAGTGCCATATATAGTCGAAGCTATCTCGATCTCTCACACTAAGTGCCATGTA
1 ATCTCGCACACTAAGTGCCATACATAGTCGAAGCTATCTCGAAATCACACACTAAGTGCCATATA
*
14107082 TAGCTAAAGCTATGTCG
66 TAGCTAAAGCTATCTCG
*
14107099 A-ATCGCACACTAAGT
1 ATCTCGCACACTAAGT
14107114 ACCACATATA
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
81 48 0.56
82 37 0.44
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (82 bp):
ATCTCGCACACTAAGTGCCATACATAGTCGAAGCTATCTCGAAATCACACACTAAGTGCCATATA
TAGCTAAAGCTATCTCG
Found at i:14107040 original size:41 final size:41
Alignment explanation
Indices: 14106936--14107123 Score: 211
Period size: 41 Copynumber: 4.6 Consensus size: 41
14106926 AATACTCGAT
* * * *
14106936 ATCTCGCACACTAAGTGTCGTACATAGCTGAAGCTATCTC-
1 ATCTCGCACACTAAGTGCCATATATAGCTAAAGCTATCTCG
** * *
14106976 AAATCACACACTAAGTGCTATATATAGCTAAAGCTATCTCG
1 ATCTCGCACACTAAGTGCCATATATAGCTAAAGCTATCTCG
*
14107017 ATCTCGCACACTAAGTGCCATATATAG-TCGAAGCTATCTCG
1 ATCTCGCACACTAAGTGCCATATATAGCT-AAAGCTATCTCG
* * *
14107058 ATCTCTCACACTAAGTGCCATGTATAGCTAAAGCTATGTCG
1 ATCTCGCACACTAAGTGCCATATATAGCTAAAGCTATCTCG
* * *
14107099 A-ATCGCACACTAAGTACCACATATA
1 ATCTCGCACACTAAGTGCCATATATA
14107124 ATTGATTTGT
Statistics
Matches: 123, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
40 52 0.42
41 70 0.57
42 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.27
Consensus pattern (41 bp):
ATCTCGCACACTAAGTGCCATATATAGCTAAAGCTATCTCG
Found at i:14109371 original size:94 final size:94
Alignment explanation
Indices: 14109258--14109433 Score: 289
Period size: 94 Copynumber: 1.9 Consensus size: 94
14109248 GATAAAAAGG
* * * * * *
14109258 GGATTTGATATGTTTCTTATCAAATAAGTAAATAGAATTTAATTATTATTTAAAATAGTTTTAGA
1 GGATTTGATATATTGCTTATCAAATAAGGAAATACAATTTAATTACTATTTAAAAGAGTTTTAGA
14109323 TAAATAATAATTAAAATTCAAAATCAAAA
66 TAAATAATAATTAAAATTCAAAATCAAAA
*
14109352 GGATTTGATATATTGCTTATCAAATAAGGAAATACAATTTAATTACTATTTACAAGAGTTTTAGA
1 GGATTTGATATATTGCTTATCAAATAAGGAAATACAATTTAATTACTATTTAAAAGAGTTTTAGA
14109417 TAAATAATAATTAAAAT
66 TAAATAATAATTAAAAT
14109434 AGAATTTAAT
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
94 75 1.00
ACGTcount: A:0.47, C:0.05, G:0.10, T:0.39
Consensus pattern (94 bp):
GGATTTGATATATTGCTTATCAAATAAGGAAATACAATTTAATTACTATTTAAAAGAGTTTTAGA
TAAATAATAATTAAAATTCAAAATCAAAA
Found at i:14111688 original size:58 final size:57
Alignment explanation
Indices: 14111541--14111689 Score: 156
Period size: 57 Copynumber: 2.6 Consensus size: 57
14111531 CATATAATAC
* * * *
14111541 GATTACCAGTCCAGGCTAAATCCTTTATATAACATATGCTCAGAGGGGCTCGATTAG
1 GATTACCAGTCCAGGCTAAATCCTTTTTATAACATATGCTCAGAGGGACTAGATCAG
* ** * * * * *
14111598 GATTACCAGTCCAGGCTAAACCCTAATCATAACGTATGCTCGAGAGGTATTATATCAG
1 GATTACCAGTCCAGGCTAAATCCTTTTTATAACATATGCTC-AGAGGGACTAGATCAG
*
14111656 GATTACCCGTCC-GAGCTAAATCCTTTTTATAACA
1 GATTACCAGTCCAG-GCTAAATCCTTTTTATAACA
14111690 AGGTCAATGG
Statistics
Matches: 72, Mismatches: 18, Indels: 3
0.77 0.19 0.03
Matches are distributed among these distances:
57 36 0.50
58 36 0.50
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (57 bp):
GATTACCAGTCCAGGCTAAATCCTTTTTATAACATATGCTCAGAGGGACTAGATCAG
Found at i:14112263 original size:20 final size:21
Alignment explanation
Indices: 14112221--14112266 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
14112211 AGCACATGTA
* *
14112221 TTCATTAAATTTTTAGAATTT
1 TTCATCAAATTTTTAGAACTT
*
14112242 TTCATCAAA-TTTTATAACTT
1 TTCATCAAATTTTTAGAACTT
14112262 TTCAT
1 TTCAT
14112267 TTTAGTCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 14 0.64
21 8 0.36
ACGTcount: A:0.33, C:0.11, G:0.02, T:0.54
Consensus pattern (21 bp):
TTCATCAAATTTTTAGAACTT
Found at i:14114173 original size:6 final size:6
Alignment explanation
Indices: 14114155--14114269 Score: 103
Period size: 6 Copynumber: 18.7 Consensus size: 6
14114145 AAGAAACATT
*
14114155 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
14114204 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
14114255 A-CAGA ATCAGA ATCA
1 ATCAGA ATCAGA ATCA
14114270 AAATGTGAAT
Statistics
Matches: 90, Mismatches: 8, Indels: 22
0.75 0.07 0.18
Matches are distributed among these distances:
5 6 0.07
6 71 0.79
7 10 0.11
8 3 0.03
ACGTcount: A:0.47, C:0.17, G:0.18, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:14114202 original size:31 final size:31
Alignment explanation
Indices: 14114139--14114269 Score: 185
Period size: 31 Copynumber: 4.3 Consensus size: 31
14114129 TAACCCATTA
* * *
14114139 CAGAATAAGAAACATTATCA-G-AACTAGAAT
1 CAGAATCAGAATCAGTATCAGGTAAC-AGAAT
* *
14114169 CAGAATCAGAATCAGAATCAGGTGACAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAAT
14114200 CAGAATCAGAATCAGTATCAGGTAACAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAAT
*
14114231 CAAAATCAGAATCAGTATCAGGTAACAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAAT
14114262 CAGAATCA
1 CAGAATCA
14114270 AAATGTGAAT
Statistics
Matches: 90, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
30 16 0.18
31 72 0.80
32 2 0.02
ACGTcount: A:0.48, C:0.16, G:0.18, T:0.18
Consensus pattern (31 bp):
CAGAATCAGAATCAGTATCAGGTAACAGAAT
Found at i:14114228 original size:25 final size:25
Alignment explanation
Indices: 14114175--14114269 Score: 88
Period size: 25 Copynumber: 3.6 Consensus size: 25
14114165 GAATCAGAAT
14114175 CAGAATCAGAATCAGGTGA-CA-G-AA
1 CAGAATCAGAATCA-GT-ATCAGGTAA
14114199 TCAGAATCAGAATCAGTATCAGGTAA
1 -CAGAATCAGAATCAGTATCAGGTAA
14114225 CAGAATCAAAATCAGAATCAGTATCAGGTAA
1 CAG------AATCAGAATCAGTATCAGGTAA
14114256 CAGAATCAGAATCA
1 CAGAATCAGAATCA
14114270 AAATGTGAAT
Statistics
Matches: 61, Mismatches: 0, Indels: 18
0.77 0.00 0.23
Matches are distributed among these distances:
23 1 0.02
24 4 0.07
25 29 0.48
26 2 0.03
31 25 0.41
ACGTcount: A:0.46, C:0.17, G:0.19, T:0.18
Consensus pattern (25 bp):
CAGAATCAGAATCAGTATCAGGTAA
Found at i:14114230 original size:19 final size:19
Alignment explanation
Indices: 14114206--14114269 Score: 61
Period size: 19 Copynumber: 3.7 Consensus size: 19
14114196 GAATCAGAAT
14114206 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
*
14114225 CAGAATCA--A--A---AT
1 CAGAATCAGTATCAGGTAA
14114237 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
*
14114256 CAGAATCAGAATCA
1 CAGAATCAGTATCA
14114270 AAATGTGAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 14
0.67 0.06 0.27
Matches are distributed among these distances:
12 9 0.26
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
19 22 0.63
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (19 bp):
CAGAATCAGTATCAGGTAA
Found at i:14114472 original size:26 final size:27
Alignment explanation
Indices: 14114409--14114482 Score: 96
Period size: 26 Copynumber: 2.8 Consensus size: 27
14114399 TGCTCAGTAT
* * *
14114409 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGAAA
14114436 CAGATATTGTGGCAGAGCCACCA-AAA
1 CAGATATTGTGGCAGAGCCACCAGAAA
* *
14114462 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
14114483 TTAACAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 21 0.50
27 21 0.50
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.18
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGAAA
Found at i:14114669 original size:22 final size:22
Alignment explanation
Indices: 14114641--14114705 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
14114631 GCAAATACGT
*
14114641 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
14114663 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
14114685 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
14114706 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:14115164 original size:27 final size:27
Alignment explanation
Indices: 14115146--14115345 Score: 125
Period size: 27 Copynumber: 7.7 Consensus size: 27
14115136 ATTTTACCGC
14115146 ACAAGGGTATCTCGATAATTCTACCCT
1 ACAAGGGTATCTCGATAATTCTACCCT
* * *
14115173 ACAGGGGTATTTCGGTAA-T-T---CT
1 ACAAGGGTATCTCGATAATTCTACCCT
* * *
14115195 --AA-GGTATCTCGGTAATTCCATCCT
1 ACAAGGGTATCTCGATAATTCTACCCT
* * *
14115219 AC-AGGGTATTTTGGTAATTCTACCCT
1 ACAAGGGTATCTCGATAATTCTACCCT
* * *
14115245 ACAGGGGTATTTCGGTAATTCTACCCT
1 ACAAGGGTATCTCGATAATTCTACCCT
* *
14115272 A-AAGGGGTATTTCGGTAATTCTACCCT
1 ACAA-GGGTATCTCGATAATTCTACCCT
* *
14115299 ACAGGGGTAT-TCCGGTAATTCTACCCT
1 ACAAGGGTATCT-CGATAATTCTACCCT
* * * *
14115326 ATAGGGGTATTTCGGTAATT
1 ACAAGGGTATCTCGATAATT
14115346 TCACAAATTA
Statistics
Matches: 145, Mismatches: 15, Indels: 26
0.78 0.08 0.14
Matches are distributed among these distances:
19 12 0.08
20 2 0.01
22 2 0.01
24 2 0.01
25 2 0.01
26 23 0.16
27 100 0.69
28 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.34
Consensus pattern (27 bp):
ACAAGGGTATCTCGATAATTCTACCCT
Found at i:14115190 original size:54 final size:54
Alignment explanation
Indices: 14115132--14115346 Score: 236
Period size: 54 Copynumber: 4.1 Consensus size: 54
14115122 GGGGCAAAAT
*
14115132 GGTAATTTTACCGC-ACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACC-CTACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTC
* * *
14115186 GGTAA--TT---CT--AA-GGTATCTCGGTAATTCCATCCTACA-GGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTC
* * * *
14115231 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTAAAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTC
* * *
14115285 GGTAATTCTACCCTACAGGGGTAT-TCCGGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATCT-CGGTAATTCTACCCTACAGGGGTATTTC
14115339 GGTAATTT
1 GGTAATTT
14115347 CACAAATTAG
Statistics
Matches: 137, Mismatches: 13, Indels: 22
0.80 0.08 0.13
Matches are distributed among these distances:
45 13 0.09
46 22 0.16
47 3 0.02
48 1 0.01
50 2 0.01
52 3 0.02
53 22 0.16
54 71 0.52
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.34
Consensus pattern (54 bp):
GGTAATTTTACCCTACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTC
Found at i:14115266 original size:72 final size:76
Alignment explanation
Indices: 14115161--14115345 Score: 243
Period size: 81 Copynumber: 2.4 Consensus size: 76
14115151 GGTATCTCGA
*
14115161 TAATTCTACCCTACAGGGGTATTTCGGTAATT-CT-AA-GGTATCTCGGTAATTCCATCCTACA-
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCCTAAAGGGTATCTCGGTAATTCCACCCTACAG
**
14115222 GGGTATTTTGG
66 GGGTATTCCGG
* *
14115233 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTAAAGGGGTATTTCGGTAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGGTAA-T-T--CCTAAA-GGGTATCTCGGTAATTCCACCC
14115298 TACAGGGGTATTCCGG
61 TACAGGGGTATTCCGG
*
14115314 TAATTCTACCCTATAGGGGTATTTCGGTAATT
1 TAATTCTACCCTACAGGGGTATTTCGGTAATT
14115346 TCACAAATTA
Statistics
Matches: 98, Mismatches: 6, Indels: 11
0.85 0.05 0.10
Matches are distributed among these distances:
72 30 0.31
73 1 0.01
74 1 0.01
77 2 0.02
78 2 0.02
79 1 0.01
80 23 0.23
81 38 0.39
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (76 bp):
TAATTCTACCCTACAGGGGTATTTCGGTAATTCCTAAAGGGTATCTCGGTAATTCCACCCTACAG
GGGTATTCCGG
Found at i:14115357 original size:27 final size:27
Alignment explanation
Indices: 14115327--14115514 Score: 207
Period size: 27 Copynumber: 7.0 Consensus size: 27
14115317 TTCTACCCTA
* * * *
14115327 TAGGGGTATTTCGGTAATTTCACAAAT
1 TAGGGGTATTTTGGTAATTTTATAAAC
*
14115354 TAGGGGTATTTTTGTAATTTTATAAAC
1 TAGGGGTATTTTGGTAATTTTATAAAC
14115381 TAGGGGTATTTTGGTAATTTTATAAAC
1 TAGGGGTATTTTGGTAATTTTATAAAC
* * *
14115408 CAAGGGTATTTTAGTAATTTTATAAAC
1 TAGGGGTATTTTGGTAATTTTATAAAC
* **
14115435 CAGGGGTATTTTGGTAATTTTATTGA-
1 TAGGGGTATTTTGGTAATTTTATAAAC
* * *
14115461 TCGAGGGTATTTGGGTAATTTTGTAAAC
1 TAG-GGGTATTTTGGTAATTTTATAAAC
* * *
14115489 CAAGGGTATTTTAGTAATTTTATAAA
1 TAGGGGTATTTTGGTAATTTTATAAA
14115515 TCGAGGGTAA
Statistics
Matches: 134, Mismatches: 25, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
26 1 0.01
27 133 0.99
ACGTcount: A:0.30, C:0.06, G:0.21, T:0.43
Consensus pattern (27 bp):
TAGGGGTATTTTGGTAATTTTATAAAC
Found at i:14115372 original size:81 final size:80
Alignment explanation
Indices: 14115197--14115364 Score: 223
Period size: 81 Copynumber: 2.1 Consensus size: 80
14115187 GTAATTCTAA
* * **
14115197 GGTATCTCGGTAATTCCATCCTACAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGTA
1 GGTATTTCGGTAATTCCACCCTACAGGGTATTCCGGTAATTCTACCCTACAGGGGTATTTCGGTA
* *
14115262 ATTCTACCCTAAAGG
66 ATTCTACACAAAAGG
* *
14115277 GGTATTTCGGTAATTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTATAGGGGTATTTCGGT
1 GGTATTTCGGTAATTCCACCCTACA-GGGTATTCCGGTAATTCTACCCTACAGGGGTATTTCGGT
14115342 AATT-T-CACAAATTAGG
65 AATTCTACACAAA--AGG
14115358 GGTATTT
1 GGTATTT
14115365 TTGTAATTTT
Statistics
Matches: 77, Mismatches: 8, Indels: 5
0.86 0.09 0.06
Matches are distributed among these distances:
79 4 0.05
80 23 0.30
81 50 0.65
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (80 bp):
GGTATTTCGGTAATTCCACCCTACAGGGTATTCCGGTAATTCTACCCTACAGGGGTATTTCGGTA
ATTCTACACAAAAGG
Found at i:14115386 original size:81 final size:81
Alignment explanation
Indices: 14115197--14115399 Score: 209
Period size: 81 Copynumber: 2.5 Consensus size: 81
14115187 GTAATTCTAA
* * *
14115197 GGTATCTCGGTAATTCCATCC-TACA-GGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGG
1 GGTATTTCGGTAATTCTA-CCAAACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGG
* *
14115260 TAATTCTACCCTAAAGG
65 TAATTCTACACAAAAGG
** ** *
14115277 GGTATTTCGGTAATTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTATAGGGGTATTTCGGT
1 GGTATTTCGGTAATTCTACCAAACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGT
14115342 AATT-T-CACAAATTAGG
66 AATTCTACACAAA--AGG
** * *
14115358 GGTATTTTTGTAATTTTA-TAAACTAGGGGTATTTTGGTAATT
1 GGTATTTCGGTAATTCTACCAAAC-AGGGGTATTTTGGTAATT
14115400 TTATAAACCA
Statistics
Matches: 103, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
79 6 0.06
80 23 0.22
81 74 0.72
ACGTcount: A:0.25, C:0.16, G:0.22, T:0.37
Consensus pattern (81 bp):
GGTATTTCGGTAATTCTACCAAACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGT
AATTCTACACAAAAGG
Found at i:14115415 original size:81 final size:81
Alignment explanation
Indices: 14115330--14115508 Score: 234
Period size: 81 Copynumber: 2.2 Consensus size: 81
14115320 TACCCTATAG
** ** * *
14115330 GGGTATTTCGGTAATTTCACAAATTAGGGGTATTTTTGTAATTTTATAAACTAG-GGGTATTTTG
1 GGGTATTTTAGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTATAAA-TAGAGGGTATTTGG
14115394 GTAATTTTATAAACCAA
65 GTAATTTTATAAACCAA
* * ** *
14115411 GGGTATTTTAGTAATTTTATAAACCAGGGGTATTTTGGTAATTTTATTGATCGAGGGTATTTGGG
1 GGGTATTTTAGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTATAAATAGAGGGTATTTGGG
*
14115476 TAATTTTGTAAACCAA
66 TAATTTTATAAACCAA
14115492 GGGTATTTTAGTAATTT
1 GGGTATTTTAGTAATTT
14115509 TATAAATCGA
Statistics
Matches: 85, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
80 2 0.02
81 83 0.98
ACGTcount: A:0.29, C:0.06, G:0.22, T:0.43
Consensus pattern (81 bp):
GGGTATTTTAGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTATAAATAGAGGGTATTTGGG
TAATTTTATAAACCAA
Found at i:14115509 original size:54 final size:54
Alignment explanation
Indices: 14115328--14115523 Score: 241
Period size: 54 Copynumber: 3.6 Consensus size: 54
14115318 TCTACCCTAT
* * * * * *
14115328 AGGGGTATTTCGGTAATTTCACAAAT-TAGGGGTATTTTTGTAATTTTATAAACT
1 AGGGGTATTTTGGTAATTTTATAAATCGA-GGGTATTTTAGTAATTTTATAAACC
* *
14115382 AGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTATAAACC
1 AGGGGTATTTTGGTAATTTTATAAATCGAGGGTATTTTAGTAATTTTATAAACC
** ** *
14115436 AGGGGTATTTTGGTAATTTTATTGATCGAGGGTATTTGGGTAATTTTGTAAACC
1 AGGGGTATTTTGGTAATTTTATAAATCGAGGGTATTTTAGTAATTTTATAAACC
* *
14115490 AAGGGTATTTTAGTAATTTTATAAATCGAGGGTA
1 AGGGGTATTTTGGTAATTTTATAAATCGAGGGTA
14115524 AAATGGTAAT
Statistics
Matches: 123, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
54 122 0.99
55 1 0.01
ACGTcount: A:0.30, C:0.06, G:0.22, T:0.41
Consensus pattern (54 bp):
AGGGGTATTTTGGTAATTTTATAAATCGAGGGTATTTTAGTAATTTTATAAACC
Found at i:14115521 original size:27 final size:27
Alignment explanation
Indices: 14115330--14115662 Score: 197
Period size: 27 Copynumber: 12.6 Consensus size: 27
14115320 TACCCTATAG
* * * *
14115330 GGGTATTTCGGTAATTTCACAAAT-TA
1 GGGTATTTTGGTAATTTTATAAATCGA
* *
14115356 GGGGTATTTTTGTAATTTTATAAA-CTA
1 -GGGTATTTTGGTAATTTTATAAATCGA
* *
14115383 GGGGTATTTTGGTAATTTTATAAACCAA
1 -GGGTATTTTGGTAATTTTATAAATCGA
* *
14115411 GGGTATTTTAGTAATTTTATAAA-CCA
1 GGGTATTTTGGTAATTTTATAAATCGA
**
14115437 GGGGTATTTTGGTAATTTTATTGATCGA
1 -GGGTATTTTGGTAATTTTATAAATCGA
* * * *
14115465 GGGTATTTGGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAATCGA
*
14115492 GGGTATTTTAGTAATTTTATAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
*** * *
14115519 GGGTAAAATGGTAATTCTGTAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
*** *
14115546 GGGTAAAATGCG-AA--TTCT--ATC--
1 GGGTATTTTG-GTAATTTTATAAATCGA
* *** *
14115567 --TTATTTCAATAATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
* *
14115592 GGATATTTGGGTAATTTTATAAATCG-
1 GGGTATTTTGGTAATTTTATAAATCGA
* * *
14115618 GGGTTACTTTGGTAATTTTACAAGTCGA
1 GGG-TATTTTGGTAATTTTATAAATCGA
*
14115646 GGGTATTTTAGTAATTT
1 GGGTATTTTGGTAATTT
14115663 GGTAAACTAA
Statistics
Matches: 238, Mismatches: 52, Indels: 32
0.74 0.16 0.10
Matches are distributed among these distances:
19 4 0.02
21 2 0.01
23 6 0.03
25 2 0.01
26 4 0.02
27 212 0.89
28 8 0.03
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAATCGA
Found at i:14115523 original size:81 final size:81
Alignment explanation
Indices: 14115355--14115514 Score: 250
Period size: 81 Copynumber: 2.0 Consensus size: 81
14115345 TTCACAAATT
* * *
14115355 AGGGGTATTTTTGTAATTTTATAAACTAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTT
1 AGGGGTATTTTGGTAATTTTATAAACGAGGGGTATTTGGGTAATTTTATAAACCAAGGGTATTTT
14115420 AGTAATTTTATAAACC
66 AGTAATTTTATAAACC
* * *
14115436 AGGGGTATTTTGGTAATTTTATTGATCGA-GGGTATTTGGGTAATTTTGTAAACCAAGGGTATTT
1 AGGGGTATTTTGGTAATTTTA-TAAACGAGGGGTATTTGGGTAATTTTATAAACCAAGGGTATTT
14115500 TAGTAATTTTATAAA
65 TAGTAATTTTATAAA
14115515 TCGAGGGTAA
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
81 68 0.94
82 4 0.06
ACGTcount: A:0.31, C:0.05, G:0.21, T:0.43
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTATAAACGAGGGGTATTTGGGTAATTTTATAAACCAAGGGTATTTT
AGTAATTTTATAAACC
Found at i:14115531 original size:81 final size:81
Alignment explanation
Indices: 14115384--14115534 Score: 232
Period size: 81 Copynumber: 1.9 Consensus size: 81
14115374 TATAAACTAG
* ***
14115384 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTATAAACCAGGGGTATTTTGG
1 GGGTATTTGGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTATAAACCAGGGGTAAAATGG
14115449 TAATTTTATTGATCGA
66 TAATTTTATTGATCGA
* *
14115465 GGGTATTTGGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTATAAATC-GAGGGTAAAATG
1 GGGTATTTGGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTATAAACCAG-GGGTAAAATG
14115529 GTAATT
65 GTAATT
14115535 CTGTAAATCG
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
80 1 0.02
81 62 0.98
ACGTcount: A:0.31, C:0.05, G:0.23, T:0.41
Consensus pattern (81 bp):
GGGTATTTGGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTATAAACCAGGGGTAAAATGG
TAATTTTATTGATCGA
Found at i:14115545 original size:81 final size:81
Alignment explanation
Indices: 14115367--14115550 Score: 228
Period size: 81 Copynumber: 2.3 Consensus size: 81
14115357 GGGTATTTTT
* * *
14115367 GTAATTTTATAAA-CTAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTAT
1 GTAATTCTATAAATCGA-GGGTATTTGGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTAT
***
14115431 AAACCAGGGGTATTTTG
65 AAACCAGGGGTAAAATG
* ** *
14115448 GTAATTTTATTGATCGAGGGTATTTGGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTATA
1 GTAATTCTATAAATCGAGGGTATTTGGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTATA
*
14115513 AATC-GAGGGTAAAATG
66 AACCAG-GGGTAAAATG
*
14115529 GTAATTCTGTAAATCGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
14115551 AAATGCGAAT
Statistics
Matches: 88, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
80 1 0.01
81 85 0.97
82 2 0.02
ACGTcount: A:0.32, C:0.06, G:0.22, T:0.40
Consensus pattern (81 bp):
GTAATTCTATAAATCGAGGGTATTTGGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTATA
AACCAGGGGTAAAATG
Found at i:14119609 original size:28 final size:29
Alignment explanation
Indices: 14119561--14119651 Score: 89
Period size: 29 Copynumber: 3.2 Consensus size: 29
14119551 GGTGTTACAT
* * * *
14119561 ACATGCATATGGCCCACTAGGTCC-AATT
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
14119589 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
14119618 ACATTCATATGGTCCATCTA-GCCCGAATC
1 ACATTCATATGGCCCAT-TAGGCCCAAATC
14119647 A-ATTC
1 ACATTC
14119652 CAAGCCATGT
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
28 24 0.45
29 27 0.51
30 2 0.04
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.27
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:14121118 original size:49 final size:49
Alignment explanation
Indices: 14120909--14121950 Score: 1945
Period size: 49 Copynumber: 21.4 Consensus size: 49
14120899 TATCACAGTT
* * * * *
14120909 ATACACTTCCAC-TTCCATCCCATTGACCATTCGGCCTTAT--CATATAT
1 ATACACTTTCACATT-CATCACATTGGCCATTTGGCCTTATCACATATAC
* *
14120956 ATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
1 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
*
14121003 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
1 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
14121050 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
14121099 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
14121148 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
14121197 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
14121246 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
14121295 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
14121344 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
14121393 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
14121442 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
14121491 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
14121540 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
14121589 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
14121638 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
14121687 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
14121736 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
14121785 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
14121834 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
*
14121883 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
14121932 ATACACTTTCACATTCATC
1 ATACACTTTCACATTCATC
14121951 GTAACAAAAT
Statistics
Matches: 982, Mismatches: 8, Indels: 8
0.98 0.01 0.01
Matches are distributed among these distances:
47 124 0.13
48 2 0.00
49 856 0.87
ACGTcount: A:0.28, C:0.29, G:0.08, T:0.34
Consensus pattern (49 bp):
ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
Found at i:14126697 original size:27 final size:27
Alignment explanation
Indices: 14126676--14126727 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
14126666 TTTGCTATGT
*
14126676 TTGGCACACTATATCACTTTGCCATTA
1 TTGGCAAACTATATCACTTTGCCATTA
*
14126703 TTGGCAAACTTTATCACTTTGCCAT
1 TTGGCAAACTATATCACTTTGCCAT
14126728 AGTTCAACTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.12, T:0.38
Consensus pattern (27 bp):
TTGGCAAACTATATCACTTTGCCATTA
Found at i:14126863 original size:31 final size:31
Alignment explanation
Indices: 14126825--14126964 Score: 126
Period size: 31 Copynumber: 4.5 Consensus size: 31
14126815 TTGTAGCCAA
*
14126825 AGCTACCACTATTCACT-ACTCAGGTACCTAG
1 AGCTACCACTTTTCACTGA-TCAGGTACCTAG
* * * *
14126856 AGCTACCATTTTTCACTAATCAAGTAGCCGA-
1 AGCTACCACTTTTCACTGATCAGGTA-CCTAG
* * *
14126887 AGCTACTACTTTTCACTGATTAGGTAGCT-G
1 AGCTACCACTTTTCACTGATCAGGTACCTAG
* *
14126917 AAGCTACCACTTTTCACTGATCAGGTA-GTTG
1 -AGCTACCACTTTTCACTGATCAGGTACCTAG
14126948 AAGCTACCACTTTTCAC
1 -AGCTACCACTTTTCAC
14126965 ATTGTACACA
Statistics
Matches: 90, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
30 2 0.02
31 84 0.93
32 4 0.04
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (31 bp):
AGCTACCACTTTTCACTGATCAGGTACCTAG
Found at i:14126892 original size:62 final size:62
Alignment explanation
Indices: 14126817--14126964 Score: 174
Period size: 62 Copynumber: 2.4 Consensus size: 62
14126807 CTTGTCACTT
* * *
14126817 GTAGCCAAAGCTACCACTATTCACT-ACTCAGGTACCT-AGAGCTACCATTTTTCACTAATCAA
1 GTAGCCGAAGCTACCACTTTTCACTGA-TCAGGTACCTGA-AGCTACCACTTTTCACTAATCAA
* * * * *
14126879 GTAGCCGAAGCTACTACTTTTCACTGATTAGGTAGCTGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAGGTACCTGAAGCTACCACTTTTCACTAATCAA
**
14126941 GTAGTTGAAGCTACCACTTTTCAC
1 GTAGCCGAAGCTACCACTTTTCAC
14126965 ATTGTACACA
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
62 71 0.97
63 2 0.03
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (62 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAGGTACCTGAAGCTACCACTTTTCACTAATCAA
Found at i:14127005 original size:32 final size:30
Alignment explanation
Indices: 14126957--14127069 Score: 93
Period size: 33 Copynumber: 3.5 Consensus size: 30
14126947 GAAGCTACCA
*
14126957 CTTTTCACATTGTACACACAAGGCATACATTTC
1 CTTTTCA-AGTGTACACACAAGG--TACATTTC
**
14126990 CTTTTCAAGTGTACACACAAAGTGTATGTTTC
1 CTTTTCAAGTGTACACAC-AAG-GTACATTTC
14127022 CTCTTT-AAGTTGTACACACACAGTGTACATTTC
1 CT-TTTCAAG-TGTACACACA-AG-GTACATTTC
*
14127055 CTTTTCCAATTGTAC
1 CTTTT-CAAGTGTAC
14127070 CTTTTAGGTA
Statistics
Matches: 67, Mismatches: 6, Indels: 14
0.77 0.07 0.16
Matches are distributed among these distances:
32 25 0.37
33 39 0.58
34 3 0.04
ACGTcount: A:0.27, C:0.24, G:0.12, T:0.37
Consensus pattern (30 bp):
CTTTTCAAGTGTACACACAAGGTACATTTC
Found at i:14127041 original size:33 final size:32
Alignment explanation
Indices: 14126986--14127069 Score: 98
Period size: 33 Copynumber: 2.6 Consensus size: 32
14126976 AAGGCATACA
14126986 TTTCCTTTTCAAGTGTACACACAAAGTGTATG
1 TTTCCTTTTCAAGTGTACACACAAAGTGTATG
* **
14127018 TTTCCTCTTT-AAGTTGTACACACACAGTGTACA
1 TTTCCT-TTTCAAG-TGTACACACAAAGTGTATG
*
14127051 TTTCCTTTTCCAATTGTAC
1 TTTCCTTTT-CAAGTGTAC
14127070 CTTTTAGGTA
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
32 12 0.27
33 30 0.68
34 2 0.05
ACGTcount: A:0.25, C:0.23, G:0.12, T:0.40
Consensus pattern (32 bp):
TTTCCTTTTCAAGTGTACACACAAAGTGTATG
Found at i:14128826 original size:31 final size:30
Alignment explanation
Indices: 14128759--14128835 Score: 73
Period size: 31 Copynumber: 2.5 Consensus size: 30
14128749 AAATAATAAT
*
14128759 AAAAATAATAAATATCTCATTAAAAAATTA
1 AAAAATAATAAATATCTAATTAAAAAATTA
** * *
14128789 ATAAAATAATATTTATCTAATTAATTAATTTA
1 A-AAAATAATAAATATCTAATTAA-AAAATTA
* *
14128821 AAAAATCATCAATAT
1 AAAAATAATAAATAT
14128836 AATCATTACA
Statistics
Matches: 36, Mismatches: 9, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
30 1 0.03
31 29 0.81
32 6 0.17
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.36
Consensus pattern (30 bp):
AAAAATAATAAATATCTAATTAAAAAATTA
Found at i:14132352 original size:28 final size:29
Alignment explanation
Indices: 14132315--14132385 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 29
14132305 AAGTCTACAT
* * *
14132315 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCAATAGGCCCAAATA
*
14132343 TCATTCATATGGCCCAATAGGCCCAAATA
1 ACATTCATATGGCCCAATAGGCCCAAATA
14132372 ACATTCATATGGCC
1 ACATTCATATGGCC
14132386 TATCCGGCCC
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
28 21 0.57
29 16 0.43
ACGTcount: A:0.31, C:0.31, G:0.15, T:0.23
Consensus pattern (29 bp):
ACATTCATATGGCCCAATAGGCCCAAATA
Found at i:14132501 original size:9 final size:9
Alignment explanation
Indices: 14132487--14132511 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
14132477 GACTTGTCAG
14132487 GCCCATTTA
1 GCCCATTTA
14132496 GCCCATTTA
1 GCCCATTTA
14132505 GCCCATT
1 GCCCATT
14132512 CCAGCCCAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.36, G:0.12, T:0.32
Consensus pattern (9 bp):
GCCCATTTA
Found at i:14135542 original size:47 final size:47
Alignment explanation
Indices: 14135484--14136395 Score: 1725
Period size: 47 Copynumber: 19.4 Consensus size: 47
14135474 CAGCCAAGAC
*
14135484 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
14135531 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
14135578 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
14135625 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
14135672 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
14135719 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
14135766 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
14135813 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
14135860 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
14135907 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
14135954 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
14136001 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
14136048 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
14136095 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
14136142 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
14136189 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
14136236 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
14136283 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * * *
14136330 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGACGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
14136377 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
14136396 TCCCGAAGGG
Statistics
Matches: 852, Mismatches: 13, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 852 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:14136570 original size:37 final size:37
Alignment explanation
Indices: 14136514--14136592 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
14136504 CCGAGCTCTA
* *
14136514 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
14136551 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
14136588 AAGAC
1 AAGAC
14136593 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:14144632 original size:25 final size:25
Alignment explanation
Indices: 14144604--14144655 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
14144594 GAGGTCGTTG
14144604 TACAGCAGGGTTTGCTCTCAGGTAC
1 TACAGCAGGGTTTGCTCTCAGGTAC
*
14144629 TACAGTAGGGTTTGCTCTCAGGTAC
1 TACAGCAGGGTTTGCTCTCAGGTAC
14144654 TA
1 TA
14144656 TGTAAACCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (25 bp):
TACAGCAGGGTTTGCTCTCAGGTAC
Found at i:14147067 original size:20 final size:20
Alignment explanation
Indices: 14147038--14147082 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
14147028 AGCACATGTA
* *
14147038 TTCATAAAATTTTATAATTT
1 TTCATAAAATTTTACAACTT
*
14147058 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
14147078 TTCAT
1 TTCAT
14147083 TTTAGTCCCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.00, T:0.51
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:14147392 original size:21 final size:21
Alignment explanation
Indices: 14147366--14147407 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
14147356 GGTTTAAGAT
14147366 CACATAAAATAAGATGATTTC
1 CACATAAAATAAGATGATTTC
14147387 CACATAAAATAAGATGATTTC
1 CACATAAAATAAGATGATTTC
14147408 TTTTATCATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.14, G:0.10, T:0.29
Consensus pattern (21 bp):
CACATAAAATAAGATGATTTC
Found at i:14153273 original size:19 final size:19
Alignment explanation
Indices: 14153237--14153275 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
14153227 TTTTCATCAT
* *
14153237 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
14153256 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
14153275 A
1 A
14153276 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:14153787 original size:28 final size:29
Alignment explanation
Indices: 14153739--14153801 Score: 94
Period size: 28 Copynumber: 2.2 Consensus size: 29
14153729 GTGATAGAGT
*
14153739 CACCAGATACAGATATTTTGTGGCAGT-GC
1 CACCAGATACAGATAATTTGTGGCA-TAGC
14153768 CACCAGA-ACAGATAATTTGTGGCATAGC
1 CACCAGATACAGATAATTTGTGGCATAGC
14153796 CACCAG
1 CACCAG
14153802 GACGCTTCCT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
27 1 0.03
28 24 0.75
29 7 0.22
ACGTcount: A:0.32, C:0.24, G:0.22, T:0.22
Consensus pattern (29 bp):
CACCAGATACAGATAATTTGTGGCATAGC
Found at i:14153954 original size:28 final size:28
Alignment explanation
Indices: 14153907--14153967 Score: 95
Period size: 28 Copynumber: 2.2 Consensus size: 28
14153897 AAATTAACCC
*
14153907 TAGGGGTATAAAGGTCATTTAGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
* *
14153935 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
14153963 TAGGG
1 TAGGG
14153968 ATATTCTAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTAGCATACA
Found at i:14161107 original size:19 final size:19
Alignment explanation
Indices: 14161083--14161121 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
14161073 TTTTCATCAT
*
14161083 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAATAATAAA
* *
14161102 AGTAAAGCAAAATCATAAA
1 AGTAAAACAAAATAATAAA
14161121 A
1 A
14161122 ATAATCAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.69, C:0.05, G:0.08, T:0.18
Consensus pattern (19 bp):
AGTAAAACAAAATAATAAA
Found at i:14161800 original size:28 final size:28
Alignment explanation
Indices: 14161753--14161817 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
14161743 AAATTAACCC
*
14161753 TAGGGGTATAAAGGTCATTTAGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
* *
14161781 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
14161809 TAGGGGTAT
1 TAGGGGTAT
14161818 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTAGCATACA
Found at i:14164371 original size:79 final size:81
Alignment explanation
Indices: 14164231--14164415 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
14164221 TTGAATGATG
*
14164231 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
*
14164295 TGTGTGAGATACTA-A
66 TGTGCGAGATACTATA
* * * * **
14164310 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCTGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
14164372 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
14164390 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
14164416 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 33 0.37
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:14164422 original size:40 final size:40
Alignment explanation
Indices: 14164231--14164415 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
14164221 TTGAATGATG
* * * *
14164231 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
14164271 TCCGGACTAAGAT-CCGAAGGCATTTGTGTGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
14164311 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
14164350 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
14164391 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
14164416 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 33 0.27
40 81 0.66
41 9 0.07
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:14164437 original size:79 final size:79
Alignment explanation
Indices: 14164284--14164448 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
14164274 GGACTAAGAT
* * **
14164284 CCGAAGGCATTTGTGTGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
* *
14164349 ATCTGGGTTAAGTC
66 ATCTCGGTTAAATC
* *
14164363 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
14164426 TATATC-CGGTTAAATT
63 TAAATCTCGGTTAAATC
14164442 CCGAAGG
1 CCGAAGG
14164449 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCTCGGTTAAATC
Found at i:14174786 original size:26 final size:24
Alignment explanation
Indices: 14174756--14174805 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
14174746 TAAATAAAAA
*
14174756 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
14174782 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
14174806 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:14174833 original size:33 final size:35
Alignment explanation
Indices: 14174795--14174860 Score: 91
Period size: 33 Copynumber: 1.9 Consensus size: 35
14174785 TAAAAACATA
*
14174795 AAAACAAATATTAAAACAA-ATA-AAATTAATACT
1 AAAACAAATATTAAAACAATACACAAATTAATACT
* *
14174828 AAAACAATTCTTAAAACAATACACAAATTAATA
1 AAAACAAATATTAAAACAATACACAAATTAATA
14174861 ATATAATAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 17 0.61
34 2 0.07
35 9 0.32
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (35 bp):
AAAACAAATATTAAAACAATACACAAATTAATACT
Found at i:14174911 original size:15 final size:16
Alignment explanation
Indices: 14174881--14174913 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
14174871 AAATGGTTAT
14174881 ATTAAAAATTTAAAATA
1 ATTAAAAA-TTAAAATA
14174898 ATTAAAAA-TAAAATA
1 ATTAAAAATTAAAATA
14174913 A
1 A
14174914 AAAATATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
ATTAAAAATTAAAATA
Found at i:14178527 original size:28 final size:28
Alignment explanation
Indices: 14178474--14178539 Score: 89
Period size: 28 Copynumber: 2.4 Consensus size: 28
14178464 GCATATGATA
*
14178474 CTGATTCTG-TAATGGGCTTAGACCCAC
1 CTGATTCTGTTAATGGGCTAAGACCCAC
* *
14178501 CTGATTCTGTTATTGGGCTAAGGCCCAC
1 CTGATTCTGTTAATGGGCTAAGACCCAC
*
14178529 CTGATACTGTT
1 CTGATTCTGTT
14178540 TCTGGGATGG
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 9 0.26
28 25 0.74
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.33
Consensus pattern (28 bp):
CTGATTCTGTTAATGGGCTAAGACCCAC
Found at i:14179536 original size:23 final size:23
Alignment explanation
Indices: 14179510--14179566 Score: 87
Period size: 23 Copynumber: 2.5 Consensus size: 23
14179500 TTAAATTTTG
* *
14179510 AATAATTAGAATTATTTAGTGAT
1 AATATTTAGAATTATTTAATGAT
*
14179533 AATATTTAGGATTATTTAATGAT
1 AATATTTAGAATTATTTAATGAT
14179556 AATATTTAGAA
1 AATATTTAGAA
14179567 AAAATCTAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (23 bp):
AATATTTAGAATTATTTAATGAT
Found at i:14179540 original size:13 final size:13
Alignment explanation
Indices: 14179522--14179564 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
14179512 TAATTAGAAT
14179522 TATTTAGTGATAA
1 TATTTAGTGATAA
14179535 TATTTAG-GAT--
1 TATTTAGTGATAA
*
14179545 TATTTAATGATAA
1 TATTTAGTGATAA
14179558 TATTTAG
1 TATTTAG
14179565 AAAAAATCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
10 6 0.24
11 3 0.12
12 3 0.12
13 13 0.52
ACGTcount: A:0.37, C:0.00, G:0.14, T:0.49
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:14180166 original size:13 final size:13
Alignment explanation
Indices: 14180148--14180204 Score: 50
Period size: 12 Copynumber: 4.6 Consensus size: 13
14180138 TTTCTGACAA
14180148 TTCTTTTCTCTTC
1 TTCTTTTCTCTTC
*
14180161 TTCTTTTCTCCTC
1 TTCTTTTCTCTTC
*
14180174 -TCTTTATCT-AT-
1 TTCTTT-TCTCTTC
*
14180185 TTCTTAT-TCTTC
1 TTCTTTTCTCTTC
14180197 TTCTTTTC
1 TTCTTTTC
14180205 CTCTATAGCC
Statistics
Matches: 34, Mismatches: 5, Indels: 10
0.69 0.10 0.20
Matches are distributed among these distances:
10 1 0.03
11 2 0.06
12 16 0.47
13 15 0.44
ACGTcount: A:0.05, C:0.28, G:0.00, T:0.67
Consensus pattern (13 bp):
TTCTTTTCTCTTC
Found at i:14180175 original size:18 final size:18
Alignment explanation
Indices: 14180154--14180204 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
14180144 ACAATTCTTT
*
14180154 TCTCTTCTTCTTTTCTCC
1 TCTCTTCTTCTTTTCTCA
*
14180172 TCTCTT-TATCTATTTCTTA
1 TCTCTTCT-TCT-TTTCTCA
14180191 T-TCTTCTTCTTTTC
1 TCTCTTCTTCTTTTC
14180205 CTCTATAGCC
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
17 5 0.18
18 16 0.57
19 7 0.25
ACGTcount: A:0.06, C:0.29, G:0.00, T:0.65
Consensus pattern (18 bp):
TCTCTTCTTCTTTTCTCA
Found at i:14181471 original size:28 final size:28
Alignment explanation
Indices: 14181431--14181543 Score: 147
Period size: 28 Copynumber: 4.1 Consensus size: 28
14181421 GGAGGAAGCG
*
14181431 TTCTAGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
*
14181459 TTCTGGTGGCTCTGTCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * *
14181487 TTCTGGTGGCCCTGCCACAATTATTTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * *
14181515 ATCTGGTGACTCTGTCAC-AATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
14181542 TT
1 TT
14181544 TGTCAGCCAT
Statistics
Matches: 72, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
27 8 0.11
28 64 0.89
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.39
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:14181522 original size:56 final size:55
Alignment explanation
Indices: 14181431--14181543 Score: 163
Period size: 56 Copynumber: 2.0 Consensus size: 55
14181421 GGAGGAAGCG
* * *
14181431 TTCTAGTGGCTCTGCCACAAATATCTGTTTCTGGTGGCTCTGTCACAAATATCTGT
1 TTCTAGTGGCCCTGCCACAAATATCTGTATCTGGTGACTCTGTCAC-AATATCTGT
* * *
14181487 TTCTGGTGGCCCTGCCACAATTATTTGTATCTGGTGACTCTGTCACAATATCTGT
1 TTCTAGTGGCCCTGCCACAAATATCTGTATCTGGTGACTCTGTCACAATATCTGT
14181542 TT
1 TT
14181544 TGTCAGCCAT
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
55 11 0.22
56 40 0.78
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.39
Consensus pattern (55 bp):
TTCTAGTGGCCCTGCCACAAATATCTGTATCTGGTGACTCTGTCACAATATCTGT
Found at i:14184132 original size:94 final size:94
Alignment explanation
Indices: 14183968--14184208 Score: 419
Period size: 94 Copynumber: 2.6 Consensus size: 94
14183958 CATTTTAGGC
14183968 AGTGCCAATGTTAACTCATTATAATAAGGCAATTTACTTAATTCAAATAGCATATAAAACCTGCA
1 AGTGCCAATGTTAACTCATTATAATAAGGCAATTTACTTAATTCAAATAGCATATAAAACCTGCA
14184033 CACAAAGTGACATTTAATTCCACACACAT
66 CACAAAGTGACATTTAATTCCACACACAT
* **
14184062 AGTGCCAATGTTAACTCGTTATAATAAGGCAATTTACTTAATTCAAATAGCATATAAAATTTGCA
1 AGTGCCAATGTTAACTCATTATAATAAGGCAATTTACTTAATTCAAATAGCATATAAAACCTGCA
* *
14184127 TACAAAGTGACATTTAATTCCGCACACAT
66 CACAAAGTGACATTTAATTCCACACACAT
* *
14184156 AGTGCCAATGTTAACTCATTATAATATGGCAACTTACTTAATTCAAATAGCAT
1 AGTGCCAATGTTAACTCATTATAATAAGGCAATTTACTTAATTCAAATAGCAT
14184209 CTACGGTCAC
Statistics
Matches: 139, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
94 139 1.00
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.31
Consensus pattern (94 bp):
AGTGCCAATGTTAACTCATTATAATAAGGCAATTTACTTAATTCAAATAGCATATAAAACCTGCA
CACAAAGTGACATTTAATTCCACACACAT
Found at i:14191490 original size:94 final size:94
Alignment explanation
Indices: 14191367--14191642 Score: 471
Period size: 94 Copynumber: 2.9 Consensus size: 94
14191357 GCATAGATCC
* * *
14191367 GCACACATAGTGCCATTTAATTCCGCACACATAGTGCCAGTGTTAACTCATTATAATAAGGCAAT
1 GCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAAGGCAAT
*
14191432 TTACTTAATTCAAATATCATATAAAATCT
66 TTACTTAATTCAAATAGCATATAAAATCT
*
14191461 GCACACAAAGTGACATTTAATTCCACACACATAGTGCCAATGTTAACTCATTATAATAAGGCAAT
1 GCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAAGGCAAT
14191526 TTACTTAATTCAAATAGCATATAAAATCT
66 TTACTTAATTCAAATAGCATATAAAATCT
* * *
14191555 GCACACAAAGTGACATTTAATTCCGCACACAGAGTGCCAATGTTAACTCATTATAATATGGCAAC
1 GCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAAGGCAAT
*
14191620 TTACATAATTCAAATAGCATATA
66 TTACTTAATTCAAATAGCATATA
14191643 CGGTCACCTT
Statistics
Matches: 172, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
94 172 1.00
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (94 bp):
GCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAAGGCAAT
TTACTTAATTCAAATAGCATATAAAATCT
Found at i:14193645 original size:27 final size:27
Alignment explanation
Indices: 14193628--14193751 Score: 167
Period size: 27 Copynumber: 4.6 Consensus size: 27
14193618 ATATTAAGTC
* *
14193628 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAAAT
*
14193655 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTATATAATCAAAT
* *
14193682 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTATATAATCAAA-T
* * *
14193710 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTATATAATCAAAT
14193737 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
14193752 GCACAATTTA
Statistics
Matches: 91, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
27 65 0.71
28 26 0.29
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAAAT
Found at i:14193720 original size:55 final size:54
Alignment explanation
Indices: 14193628--14193751 Score: 194
Period size: 55 Copynumber: 2.3 Consensus size: 54
14193618 ATATTAAGTC
* *
14193628 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAAT
* * *
14193682 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCTACATAATCAAAT
14193737 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
14193752 GCACAATTTA
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
54 20 0.31
55 44 0.69
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAAT
Found at i:14206409 original size:50 final size:50
Alignment explanation
Indices: 14206290--14206583 Score: 277
Period size: 50 Copynumber: 5.8 Consensus size: 50
14206280 AACCGAAGCT
* * * *
14206290 ATCTGGTACACATAGTAGCTTGCGCTTAGTACTACACATGCGA-CTAACA
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACC
* *
14206339 ATCTGGTATACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACC
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACC
* * * * * **
14206389 ATCTGATACACGTAGCAGCCTGCACTTAGTACTACACACGTGA-TTGAAGTT
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT-AA-CC
* * * * ** *
14206440 GTCGGGTACGCATAGTAGCCTGCAGTTAGTACTACACATACGACCTAACT
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACC
* * *
14206490 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTTAAAACC
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT--AACC
*** * * *
14206542 ATCTTAAACATATAGTAGCCTGCACATAATACTACACATGTG
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTG
14206584 TTCTCACAAT
Statistics
Matches: 196, Mismatches: 43, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
49 39 0.20
50 84 0.43
51 35 0.18
52 38 0.19
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (50 bp):
ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACC
Found at i:14206476 original size:101 final size:101
Alignment explanation
Indices: 14206351--14206532 Score: 310
Period size: 101 Copynumber: 1.8 Consensus size: 101
14206341 CTGGTATACG
**
14206351 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACACGTAGCAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATACGACCTAACCATCTGATACACGTAGCAGCCTGCACTT
14206416 AGTACTACACACGTGATTGAAGTTGTCGGGTACGCA
66 AGTACTACACACGTGATTGAAGTTGTCGGGTACGCA
* * * *
14206452 TAGTAGCCTGCAGTTAGTACTACACATACGACCTAACTATCTGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATACGACCTAACCATCTGATACACGTAGCAGCCTGCACTT
14206517 AGTACTACACACGTGA
66 AGTACTACACACGTGA
14206533 CTTAAAACCA
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
101 75 1.00
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACATACGACCTAACCATCTGATACACGTAGCAGCCTGCACTT
AGTACTACACACGTGATTGAAGTTGTCGGGTACGCA
Found at i:14206533 original size:151 final size:151
Alignment explanation
Indices: 14206294--14206579 Score: 405
Period size: 151 Copynumber: 1.9 Consensus size: 151
14206284 GAAGCTATCT
* * *
14206294 GGTACACATAGTAGCTTGCGCTTAGTACTACACATGCGACTAACAATCTGGTATACGTAGTAGCC
1 GGTACACATAGTAGCCTGCGCTTAGTACTACACATACGACTAACAATCTGGTACACGTAGTAGCC
* * * * *
14206359 TGCACTTAGTACTACACATGTGACCT-AACCATCTGATACACGTAGCAGCCTGCACTTAGTACTA
66 TGCACTTAGTACTACACACGTGACCTAAACCATCTGAAACACATAGCAGCCTGCACATAATACTA
14206423 CACACGTGATTGAAGTTGTCG
131 CACACGTGATTGAAGTTGTCG
* *
14206444 GGTACGCATAGTAGCCTGCAG-TTAGTACTACACATACGACCTAACTATCTGGTACACGTAGTAG
1 GGTACACATAGTAGCCTGC-GCTTAGTACTACACATACGA-CTAACAATCTGGTACACGTAGTAG
* * * *
14206508 CCTGCACTTAGTACTACACACGTGACTTAAAACCATCTTAAACATATAGTAGCCTGCACATAATA
64 CCTGCACTTAGTACTACACACGTGACCT-AAACCATCTGAAACACATAGCAGCCTGCACATAATA
14206573 CTACACA
128 CTACACA
14206580 TGTGTTCTCA
Statistics
Matches: 118, Mismatches: 14, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
150 34 0.29
151 49 0.42
153 35 0.30
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (151 bp):
GGTACACATAGTAGCCTGCGCTTAGTACTACACATACGACTAACAATCTGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGTGACCTAAACCATCTGAAACACATAGCAGCCTGCACATAATACTA
CACACGTGATTGAAGTTGTCG
Found at i:14208067 original size:34 final size:34
Alignment explanation
Indices: 14207995--14208067 Score: 85
Period size: 34 Copynumber: 2.1 Consensus size: 34
14207985 CTGTACTGTT
* * * * *
14207995 ACTGTTACTGTAATGGGCTAAGTCCCACACTAAT
1 ACTGATACTATAATGGGCTAAGTCCCAAACGAAA
14208029 ACTGATACTATAATGGGCTAAGGT-CCAAACGAAA
1 ACTGATACTATAATGGGCTAA-GTCCCAAACGAAA
14208063 ACTGA
1 ACTGA
14208068 ACTGTTACTG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
34 31 0.94
35 2 0.06
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.25
Consensus pattern (34 bp):
ACTGATACTATAATGGGCTAAGTCCCAAACGAAA
Found at i:14211527 original size:46 final size:45
Alignment explanation
Indices: 14211460--14211634 Score: 172
Period size: 46 Copynumber: 3.8 Consensus size: 45
14211450 TGTAACCCGC
14211460 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
* * * *
14211506 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGCAT
* *** * * * *
14211552 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCAGACATTCACAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
* *
14211599 CCATAAGTAAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
14211635 ATGCCCAAAT
Statistics
Matches: 102, Mismatches: 22, Indels: 10
0.76 0.16 0.07
Matches are distributed among these distances:
45 1 0.01
46 67 0.66
47 32 0.31
48 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGCAT
Done.