Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 43 of 313
Found at i:14523790 original size:19 final size:19
Alignment explanation
Indices: 14523766--14523812 Score: 76
Period size: 19 Copynumber: 2.4 Consensus size: 19
14523756 ATCACTTCAC
14523766 TTTTTTTTATAACTTCGTA
1 TTTTTTTTATAACTTCGTA
*
14523785 TTTTTTTTATAATTTCGTA
1 TTTTTTTTATAACTTCGTA
14523804 TTTCTTTTT
1 TTT-TTTTT
14523813 TTTTATAACT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 21 0.81
20 5 0.19
ACGTcount: A:0.17, C:0.09, G:0.04, T:0.70
Consensus pattern (19 bp):
TTTTTTTTATAACTTCGTA
Found at i:14530880 original size:46 final size:46
Alignment explanation
Indices: 14530814--14530983 Score: 202
Period size: 46 Copynumber: 3.7 Consensus size: 46
14530804 TATCTCGACG
14530814 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTTAATA
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTTAATA
* * * *
14530860 CCGATGCATGTCCCAAACATGTCTTACACAAGCTTTCGTCTTAATG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTTAATA
* * * * *
14530906 CTGATGCATGTCCCAGATATGTCTTACACTAGGTCT--T-ATAATGTGG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTTAA--T-A
*
14530952 CCGATGCATGTCCTAGACATGTCTTACACTAG
1 CCGATGCATGTCCCAGACATGTCTTACACTAG
14530984 TACACATATC
Statistics
Matches: 107, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 1 0.01
46 102 0.95
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (46 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTTAATA
Found at i:14532243 original size:22 final size:21
Alignment explanation
Indices: 14532213--14532253 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
14532203 ATCATTTATA
*
14532213 ATTCATACAATCACATAACAC
1 ATTCATACAAGCACATAACAC
*
14532234 ATTCAATACAAGCATATAAC
1 ATTC-ATACAAGCACATAAC
14532254 TATACACAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.49, C:0.24, G:0.02, T:0.24
Consensus pattern (21 bp):
ATTCATACAAGCACATAACAC
Found at i:14532403 original size:21 final size:22
Alignment explanation
Indices: 14532378--14532426 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
14532368 TAAATAAATG
*
14532378 AATTTAATCA-TCAATTTAATTC
1 AATTTAAT-ATTCAATTGAATTC
*
14532400 -ATTTCATATTCAATTGAATTC
1 AATTTAATATTCAATTGAATTC
14532421 AATTTA
1 AATTTA
14532427 CACCCTAGGA
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
20 1 0.05
21 17 0.77
22 4 0.18
ACGTcount: A:0.39, C:0.12, G:0.02, T:0.47
Consensus pattern (22 bp):
AATTTAATATTCAATTGAATTC
Found at i:14534766 original size:24 final size:24
Alignment explanation
Indices: 14534742--14534827 Score: 82
Period size: 24 Copynumber: 3.6 Consensus size: 24
14534732 GGTAACACAG
* *
14534742 AATAAGCCACAAAGGCATTTACAG
1 AATATGCCACAAAGGCATTTACAA
* ** *
14534766 AATACGCCAGTAGGGCATTTACAA
1 AATATGCCACAAAGGCATTTACAA
* * **
14534790 AATATGTCATAAAGGTGTTTACAA
1 AATATGCCACAAAGGCATTTACAA
14534814 AATATGCCACAAAG
1 AATATGCCACAAAG
14534828 ACATCATAGA
Statistics
Matches: 48, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.43, C:0.17, G:0.17, T:0.22
Consensus pattern (24 bp):
AATATGCCACAAAGGCATTTACAA
Found at i:14542133 original size:42 final size:42
Alignment explanation
Indices: 14542053--14542133 Score: 101
Period size: 42 Copynumber: 1.9 Consensus size: 42
14542043 GTGTAGGTTT
*
14542053 CACACGGCCGAGACACACGCCCATGTTCTAGGCCGTGTAGCA
1 CACACGGCCGAGACACACACCCATGTTCTAGGCCGTGTAGCA
** * *
14542095 CACACGGTTGAGACACACACCCGTG-TCTATGCCTGTGTA
1 CACACGGCCGAGACACACACCCATGTTCTAGGCC-GTGTA
14542134 CTCAATTTTG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
41 7 0.21
42 26 0.79
ACGTcount: A:0.23, C:0.33, G:0.25, T:0.19
Consensus pattern (42 bp):
CACACGGCCGAGACACACACCCATGTTCTAGGCCGTGTAGCA
Found at i:14544151 original size:38 final size:38
Alignment explanation
Indices: 14544108--14544180 Score: 128
Period size: 38 Copynumber: 1.9 Consensus size: 38
14544098 AAATTAACAT
*
14544108 GTATAACCTTGGCATATCCACTTAGCACCACGTTACAC
1 GTATAACCGTGGCATATCCACTTAGCACCACGTTACAC
*
14544146 GTATAACCGTGGTATATCCACTTAGCACCACGTTA
1 GTATAACCGTGGCATATCCACTTAGCACCACGTTA
14544181 ATGAATCAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (38 bp):
GTATAACCGTGGCATATCCACTTAGCACCACGTTACAC
Found at i:14544259 original size:48 final size:47
Alignment explanation
Indices: 14544153--14544282 Score: 172
Period size: 48 Copynumber: 2.7 Consensus size: 47
14544143 CACGTATAAC
*
14544153 CGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATGTAA
1 CGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATGTAA
* * * * *
14544199 CTGTGGCATATCCATTTACCACCACGTTACATGTATCAGTATGTGTAA
1 C-GTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATGTAA
*
14544247 TCGTGGTATATCCACTTAGCACCACGTTACACGTAT
1 -CGTGGTATATCCACTTAGCACCACGTTACATGTAT
14544283 AACCATGATA
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
46 1 0.01
47 24 0.34
48 45 0.63
49 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (47 bp):
CGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATGTAA
Found at i:14549421 original size:93 final size:93
Alignment explanation
Indices: 14549308--14549479 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
14549298 GCCCATAAGT
* * * * * *
14549308 GAACTCGGACTCAACTCAACGATCTTGGGCATTCACGTCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGCACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
14549373 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* *
14549401 GAACTCGCACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGCACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
14549466 CGAGCTCGGATGCC
66 CGAGCTCGGATGCC
14549480 CAAATATCCT
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.20
Consensus pattern (93 bp):
GAACTCGCACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:14549468 original size:46 final size:46
Alignment explanation
Indices: 14549300--14549475 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
14549290 TGTAACTCGC
* * * * *
14549300 CCATAAGTGAACTCGGACTCAACTCAACGATCTTGGGCATTCACGT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCACAT
14549346 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C--GTTCACAT
* * * *
14549396 -C-TCA-CGAACTCGCACTCAACTCAACGAGCTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCACAT
*
14549439 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
14549476 TGCCCAAATA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 2 0.02
45 2 0.02
46 61 0.56
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.31, G:0.19, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCACAT
Found at i:14549910 original size:30 final size:30
Alignment explanation
Indices: 14549876--14549933 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
14549866 CCCAAGAACG
*
14549876 AACTTTGACAAAATTAC-CATTTTGCCCCTA
1 AACTTTCACAAAATTACAC-TTTTGCCCCTA
* *
14549906 AACTTTCACATATTTACACTTTTGCCCC
1 AACTTTCACAAAATTACACTTTTGCCCC
14549934 AAAGCTCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 23 0.96
31 1 0.04
ACGTcount: A:0.29, C:0.29, G:0.05, T:0.36
Consensus pattern (30 bp):
AACTTTCACAAAATTACACTTTTGCCCCTA
Found at i:14551430 original size:14 final size:15
Alignment explanation
Indices: 14551413--14551442 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
14551403 AAAATGCAAG
14551413 AAGGAGG-AGAAAAA
1 AAGGAGGAAGAAAAA
14551427 AAGGAGGAAGAAAAA
1 AAGGAGGAAGAAAAA
14551442 A
1 A
14551443 CATCGTGTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (15 bp):
AAGGAGGAAGAAAAA
Found at i:14564176 original size:6 final size:6
Alignment explanation
Indices: 14564158--14564239 Score: 62
Period size: 6 Copynumber: 13.3 Consensus size: 6
14564148 AAGAAACATT
* *
14564158 ATCAGA A-CTAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
* *
14564207 ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
14564240 GTGAATGCAA
Statistics
Matches: 60, Mismatches: 8, Indels: 16
0.71 0.10 0.19
Matches are distributed among these distances:
5 4 0.07
6 48 0.80
7 6 0.10
8 2 0.03
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:14564202 original size:31 final size:31
Alignment explanation
Indices: 14564167--14564239 Score: 110
Period size: 31 Copynumber: 2.4 Consensus size: 31
14564157 TATCAGAACT
* *
14564167 AGAATCAGAATCAGAATTAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
*
14564198 AGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
*
14564229 AAAATCAGAAT
1 AGAATCAGAAT
14564240 GTGAATGCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTAACAGAATC
Found at i:14564424 original size:27 final size:26
Alignment explanation
Indices: 14564376--14564477 Score: 114
Period size: 27 Copynumber: 3.8 Consensus size: 26
14564366 GCTCAGTTAT
* *
14564376 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
*
14564403 CAGATATTGTGGCGGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
* *
14564429 CAAATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
14564457 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
14564478 TTAACAGAAT
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 6 0.09
27 51 0.80
28 7 0.11
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:14564664 original size:22 final size:21
Alignment explanation
Indices: 14564636--14564700 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 21
14564626 GCAAATATGT
*
14564636 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCAT-ATCAGG
* *
14564658 TTGGCACAGAGCCATATGTAGG
1 TTGGCACAAAGCCATAT-CAGG
*
14564680 TTGACACAAAGCCATGATCAG
1 TTGGCACAAAGCCAT-ATCAG
14564701 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.32, C:0.23, G:0.25, T:0.20
Consensus pattern (21 bp):
TTGGCACAAAGCCATATCAGG
Found at i:14565184 original size:27 final size:27
Alignment explanation
Indices: 14565127--14565348 Score: 284
Period size: 27 Copynumber: 8.3 Consensus size: 27
14565117 GGGGCAAAAT
* * * *
14565127 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
14565153 GGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
14565180 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
14565207 GATAATTCTATCCTATAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
14565234 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
14565261 GGTAATTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
14565288 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
14565315 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
14565342 GATAATT
1 GGTAATT
14565349 TTGTAAATCG
Statistics
Matches: 169, Mismatches: 26, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
26 14 0.08
27 155 0.92
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:14565362 original size:27 final size:27
Alignment explanation
Indices: 14565332--14565565 Score: 138
Period size: 27 Copynumber: 8.7 Consensus size: 27
14565322 CTACCCTACA
**
14565332 AGGGTATTTCGATAATTTTGTAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*** * ** *
14565359 AGGGTAAAACGATAATTCTGTAAATCA
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
14565386 AAGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCGATAATTTTACAAATCG
* **
14565413 AGGGTATTTCAATAATTTTACAGGTCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
14565440 AGGGTATTTC-AGTAATTTCACAAATC-
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * *
14565466 AGGGGTATTTTGGTAATTTTACAAA-CT
1 A-GGGTATTTCGATAATTTTACAAATCG
* * *
14565493 AGGGTATTTTGATAAGTTTACAAA-CC
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
14565519 AGGGGTATTTTGGTAATTTTACAAA-CT
1 A-GGGTATTTCGATAATTTTACAAATCG
* *
14565546 AGGGGTATTTTGGTAATTTT
1 A-GGGTATTTCGATAATTTT
14565566 GTAAACCAAT
Statistics
Matches: 169, Mismatches: 31, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
26 29 0.17
27 140 0.83
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:14565613 original size:81 final size:80
Alignment explanation
Indices: 14565388--14565672 Score: 297
Period size: 81 Copynumber: 3.5 Consensus size: 80
14565378 GTAAATCAAA
* ** * ** *** **
14565388 GGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAATAATTTTACAGGTC-GAGGGTATTTCAG
1 GGTATTTTGGTAATTTTACAAACCAAGGGTATTT-TGTAATTTTACAAACCAG-GGGTATTTTGG
*
14565452 TAATTTCACAAA-TCAGG
64 TAATTTTACAAACT-AGG
* *
14565469 GGTATTTTGGTAATTTTACAAA-CTAGGGTATTTTGATAAGTTTACAAACCAGGGGTATTTTGGT
1 GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTG-TAATTTTACAAACCAGGGGTATTTTGGT
14565533 AATTTTACAAACTAGG
65 AATTTTACAAACTAGG
** *
14565549 GGTATTTTGGTAATTTTGTAAACCAATGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGT
1 GGTATTTTGGTAATTTTACAAACCAAGGGTATTTT-GTAATTTTACAAACCAGGGGTATTTTGGT
* * *
14565614 GATTTTATAAACTAAG
65 AATTTTACAAACTAGG
* *
14565630 GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 GGTATTTTGGTAATTTTACAAACCAAGGGTATTTT-GTAATTT
14565673 GGTAAACTAA
Statistics
Matches: 173, Mismatches: 26, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
80 63 0.36
81 109 0.63
82 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (80 bp):
GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGTAATTTTACAAACCAGGGGTATTTTGGTA
ATTTTACAAACTAGG
Found at i:14565679 original size:27 final size:27
Alignment explanation
Indices: 14565441--14565672 Score: 295
Period size: 27 Copynumber: 8.6 Consensus size: 27
14565431 TACAGGTCGA
** * *
14565441 GGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
14565468 GGGTATTTTGGTAATTTTACAAACTA-
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
14565494 GGGTATTTTGATAAGTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
14565521 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
14565548 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
14565575 TGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * * *
14565602 GGGTATTTTGGTGATTTTATAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
14565629 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
14565656 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
14565673 GGTAAACTAA
Statistics
Matches: 172, Mismatches: 32, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
26 23 0.13
27 149 0.87
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:14565682 original size:54 final size:54
Alignment explanation
Indices: 14565388--14565672 Score: 295
Period size: 54 Copynumber: 5.3 Consensus size: 54
14565378 GTAAATCAAA
* * ** * * * ***
14565388 GGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAATAATTTTACAGGTC-GAG
1 GGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG-G
** * * * * * *
14565442 GGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACTA-G
1 GGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGG
* * * * * *
14565495 GGTATTTTGATAAGTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGG
* *
14565549 GGTATTTTGGTAATTTTGTAAACCAATGGTATTTTAGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGG
* *
14565603 GGTATTTTGGTGATTTTATAAACTAAGGGTATTTTAGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGG
14565657 GGTATTTTGGTAATTT
1 GGTATTTTGGTAATTT
14565673 GGTAAACTAA
Statistics
Matches: 196, Mismatches: 33, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
53 47 0.24
54 149 0.76
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (54 bp):
GGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGG
Found at i:14569028 original size:67 final size:64
Alignment explanation
Indices: 14568888--14569136 Score: 234
Period size: 68 Copynumber: 3.8 Consensus size: 64
14568878 AGTTCGGCTT
* * * * *
14568888 TCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGCTA-ATTTATCTCGTAGCTC
1 TCTTGT-CTACATGGTGTACACATAGAACCACCCATGTGACCTAGCTACATATATTTCGTAGCTC
* * *
14568951 TCTTGTCTACATGGTGTCCTTCACCTAGAACCACGCATGTGACCTAGCTACATATATTTCGTAGC
1 TCTTGTCTACATGGTG---TACACATAGAACCACCCATGTGACCTAGCTACATATATTTCGTAGC
14569016 TC
63 TC
* * *
14569018 TCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATCATAATGTCTCGTAG
1 TCTTGTCTACATGGTGTACACATAGAACCACCCATGTGACCTAGCTACAT-AT-AT-T-TCGTAG
14569083 CTC
62 CTC
** * * * **
14569086 TCTTGTAC-ACATAATGTGCACTTAGCACCATACATGTGACCTAGCTACATA
1 TCTTGT-CTACATGGTGTACACATAGAACCACCCATGTGACCTAGCTACATA
14569137 CCATCTGTAT
Statistics
Matches: 154, Mismatches: 22, Indels: 16
0.80 0.11 0.08
Matches are distributed among these distances:
62 1 0.01
63 14 0.09
64 28 0.18
65 2 0.01
66 28 0.18
67 32 0.21
68 48 0.31
69 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.31
Consensus pattern (64 bp):
TCTTGTCTACATGGTGTACACATAGAACCACCCATGTGACCTAGCTACATATATTTCGTAGCTC
Found at i:14569578 original size:28 final size:28
Alignment explanation
Indices: 14569538--14569593 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
14569528 AAATTACAAT
14569538 ATTATTGCAGTATTATTATCATACCAAC
1 ATTATTGCAGTATTATTATCATACCAAC
*
14569566 ATTATTTCAGTATTATTATCATACCAAC
1 ATTATTGCAGTATTATTATCATACCAAC
14569594 TTACCTCAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.36, C:0.18, G:0.05, T:0.41
Consensus pattern (28 bp):
ATTATTGCAGTATTATTATCATACCAAC
Found at i:14572610 original size:46 final size:46
Alignment explanation
Indices: 14572557--14572732 Score: 155
Period size: 46 Copynumber: 3.8 Consensus size: 46
14572547 TATTTGGGCA
*
14572557 TTCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
** * * *
14572603 TTCGAACTAATTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * * *
14572648 CATCCGAGCACGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-C
1 --TTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
14572695 ATCTAAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TTCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
14572733 GCGGGTTACA
Statistics
Matches: 100, Mismatches: 20, Indels: 20
0.71 0.14 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 56 0.56
47 24 0.24
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (46 bp):
TTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:14575693 original size:15 final size:15
Alignment explanation
Indices: 14575655--14575697 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
14575645 GTATCTTGGG
*
14575655 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
* *
14575670 TCTCATTATTCTGGA
1 TTTCTTTATTCTGGA
14575685 TTTCTTTATTCTG
1 TTTCTTTATTCTG
14575698 TGTTTTCTCT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.14, C:0.19, G:0.12, T:0.56
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:14575711 original size:97 final size:97
Alignment explanation
Indices: 14575594--14575800 Score: 346
Period size: 97 Copynumber: 2.2 Consensus size: 97
14575584 ATTATCGGGG
* * **
14575594 TATTCTGTGTTTTCTCTATGAGTTTGGTTTTTGATTCTCTGGCATAGTATCGTATCTTGGGTTTC
1 TATTCTGTGTTTTCTCTATGAGTTTGGTTTTCGATTCTCCGGCATAGTATCGTATCTTAAGTTTC
14575659 TTTATCCTGGATCTCATTATTCTGGATTTCTT
66 TTTATCCTGGATCTCATTATTCTGGATTTCTT
14575691 TATTCTGTGTTTTCTCTATGAGTTTGGTTTTCGATTCTCCGGCATAGTATCGTATCTTAAGTTTC
1 TATTCTGTGTTTTCTCTATGAGTTTGGTTTTCGATTCTCCGGCATAGTATCGTATCTTAAGTTTC
* *
14575756 TTTATCCTGGATCTCTTTATTTTGGATTTCTT
66 TTTATCCTGGATCTCATTATTCTGGATTTCTT
14575788 TATTC-G-GTTTTCT
1 TATTCTGTGTTTTCT
14575801 TGTTATCTTT
Statistics
Matches: 104, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
95 7 0.07
96 1 0.01
97 96 0.92
ACGTcount: A:0.14, C:0.16, G:0.17, T:0.53
Consensus pattern (97 bp):
TATTCTGTGTTTTCTCTATGAGTTTGGTTTTCGATTCTCCGGCATAGTATCGTATCTTAAGTTTC
TTTATCCTGGATCTCATTATTCTGGATTTCTT
Found at i:14575791 original size:15 final size:15
Alignment explanation
Indices: 14575752--14575801 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 15
14575742 GTATCTTAAG
*
14575752 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
* *
14575767 TCTCTTTATTTTGGA
1 TTTCTTTATTCTGGA
*
14575782 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
14575796 TTTCTT
1 TTTCTT
14575802 GTTATCTTTG
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
14 8 0.28
15 21 0.72
ACGTcount: A:0.10, C:0.16, G:0.12, T:0.62
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:14578245 original size:46 final size:46
Alignment explanation
Indices: 14578192--14578367 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
14578182 TATTTGGGCA
* *
14578192 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
14578238 TCCGAACTCATTGAGTTGAGTCCGAGTT--C--GTGCGATGTAACTAGGCA
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATG-GATGCAA--A--CG
* * *
14578285 TCCGAGCTCATTGAGTTGAGTCCGAGCTCACTTATGGATGCGAACG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
14578331 TCCGAGCTCGTTGAGTTCAGTCCGAGTTCGCTTATGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
14578368 GCGGGCTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 6 0.06
44 1 0.01
45 1 0.01
46 61 0.58
47 26 0.25
48 1 0.01
49 1 0.01
50 5 0.05
51 2 0.02
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:14578347 original size:93 final size:93
Alignment explanation
Indices: 14578188--14578360 Score: 274
Period size: 93 Copynumber: 1.9 Consensus size: 93
14578178 ACGATATTTG
* * *
14578188 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCATTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGCTCACTTATGGATGCAAACGTCCGAACTCATTGAG
*
14578253 TTGAGTCCGAGTTCGTGCGATGTAACTA
66 TTCAGTCCGAGTTCGTGCGATGTAACTA
* * * *
14578281 GGCATCCGAGCTCATTGAGTTGAGTCCGAGCTCACTTATGGATGCGAACGTCCGAGCTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGCTCACTTATGGATGCAAACGTCCGAACTCATTGAG
14578346 TTCAGTCCGAGTTCG
66 TTCAGTCCGAGTTCG
14578361 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGCTCACTTATGGATGCAAACGTCCGAACTCATTGAG
TTCAGTCCGAGTTCGTGCGATGTAACTA
Found at i:14581227 original size:16 final size:16
Alignment explanation
Indices: 14581202--14581233 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
14581192 GCACGAGAGC
*
14581202 TACCTTAGTAGCTAGT
1 TACCTCAGTAGCTAGT
14581218 TACCTCAGTAGCTAGT
1 TACCTCAGTAGCTAGT
14581234 GTGGGTAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (16 bp):
TACCTCAGTAGCTAGT
Found at i:14586066 original size:14 final size:15
Alignment explanation
Indices: 14586027--14586068 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
14586017 AATTAAATGC
14586027 AAATTATATATGCTG
1 AAATTATATATGCTG
* *
14586042 AAATGAAATATG-TG
1 AAATTATATATGCTG
*
14586056 AATTTATATATGC
1 AAATTATATATGC
14586069 AATTGCTGAA
Statistics
Matches: 21, Mismatches: 5, Indels: 2
0.75 0.18 0.07
Matches are distributed among these distances:
14 11 0.52
15 10 0.48
ACGTcount: A:0.43, C:0.05, G:0.14, T:0.38
Consensus pattern (15 bp):
AAATTATATATGCTG
Found at i:14588984 original size:15 final size:15
Alignment explanation
Indices: 14588964--14588993 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
14588954 CACGGCCCAC
14588964 AATACCAGTATTAGG
1 AATACCAGTATTAGG
14588979 AATACCAGTATTAGG
1 AATACCAGTATTAGG
14588994 CCCAGTGACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.13, G:0.20, T:0.27
Consensus pattern (15 bp):
AATACCAGTATTAGG
Found at i:14593342 original size:43 final size:43
Alignment explanation
Indices: 14593292--14593378 Score: 108
Period size: 43 Copynumber: 2.0 Consensus size: 43
14593282 ATTTGTGTTT
**
14593292 TCGATATGTGTTTACGA-GTAAGACC-CAGTCTGGGACAG-TGGCA
1 TCGATATGTGGCTAC-ATGTAAGACCAC-GTCTGGGAC-GTTGGCA
14593335 TCGATATGTGGCTACATGTAAGACCACGTCTGGGACGTTGGCA
1 TCGATATGTGGCTACATGTAAGACCACGTCTGGGACGTTGGCA
14593378 T
1 T
14593379 TGTACAATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
42 2 0.05
43 36 0.92
44 1 0.03
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (43 bp):
TCGATATGTGGCTACATGTAAGACCACGTCTGGGACGTTGGCA
Found at i:14599315 original size:28 final size:29
Alignment explanation
Indices: 14599279--14599335 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
14599269 ATTAAACAAC
*
14599279 AATTAGACA-ACTTAAATGACACTAACTA
1 AATTAGACATACTTAAATGAAACTAACTA
* * *
14599307 AATTGGACATATTTAATTGAAACTAACTA
1 AATTAGACATACTTAAATGAAACTAACTA
14599336 GCATATTAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 8 0.33
29 16 0.67
ACGTcount: A:0.47, C:0.14, G:0.09, T:0.30
Consensus pattern (29 bp):
AATTAGACATACTTAAATGAAACTAACTA
Found at i:14602123 original size:68 final size:67
Alignment explanation
Indices: 14602051--14602200 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
14602041 CATCATGTGT
* * * *
14602051 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
14602113 ATGTAG
62 ATGTAG
** * *
14602119 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
14602184 AG
66 AG
14602186 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
14602201 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:14602156 original size:64 final size:64
Alignment explanation
Indices: 14602075--14602258 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
14602065 AGACATTATG
* *
14602075 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
14602139 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
14602204 AA
63 AA
* * * *
14602206 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
14602259 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:14605080 original size:7 final size:7
Alignment explanation
Indices: 14605068--14605118 Score: 59
Period size: 7 Copynumber: 7.1 Consensus size: 7
14605058 TCCCTAAATC
14605068 ATTTGAA
1 ATTTGAA
14605075 ATTTGAA
1 ATTTGAA
14605082 ATTTGAA
1 ATTTGAA
14605089 ATTTG-A
1 ATTTGAA
* *
14605095 ATGATGATT
1 AT-TTGA-A
14605104 ATTTGAA
1 ATTTGAA
14605111 ATTTGAA
1 ATTTGAA
14605118 A
1 A
14605119 ATGTGTGTGA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
6 3 0.08
7 29 0.78
8 3 0.08
9 2 0.05
ACGTcount: A:0.41, C:0.00, G:0.16, T:0.43
Consensus pattern (7 bp):
ATTTGAA
Found at i:14607243 original size:27 final size:26
Alignment explanation
Indices: 14607204--14607285 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
14607194 TGGTTGCCAA
*
14607204 AACAGATATTGTGACAGAGTCACCAG
1 AACAGATATTGTGACAGAGCCACCAG
*
14607230 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGACAGAGCCACCAG
*
14607257 AACAGATATTTGTGGCATG-GCCACCAG
1 AACAGATA-TTGTGACA-GAGCCACCAG
14607284 AA
1 AA
14607286 TGCTTCCTAC
Statistics
Matches: 51, Mismatches: 2, Indels: 5
0.88 0.03 0.09
Matches are distributed among these distances:
26 8 0.16
27 42 0.82
28 1 0.02
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (26 bp):
AACAGATATTGTGACAGAGCCACCAG
Found at i:14608254 original size:37 final size:37
Alignment explanation
Indices: 14608213--14608288 Score: 134
Period size: 37 Copynumber: 2.1 Consensus size: 37
14608203 CCTATACCAC
14608213 AGGTATGAAGGTTTCAGATTTTTAAAGAAAAAGGGAA
1 AGGTATGAAGGTTTCAGATTTTTAAAGAAAAAGGGAA
* *
14608250 AGGTATGAAGGTTTCAGCTTTTTAAAGAAAAATGGAA
1 AGGTATGAAGGTTTCAGATTTTTAAAGAAAAAGGGAA
14608287 AG
1 AG
14608289 AGGTTCGGCT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.42, C:0.04, G:0.26, T:0.28
Consensus pattern (37 bp):
AGGTATGAAGGTTTCAGATTTTTAAAGAAAAAGGGAA
Found at i:14617080 original size:70 final size:70
Alignment explanation
Indices: 14616963--14617097 Score: 225
Period size: 70 Copynumber: 1.9 Consensus size: 70
14616953 TAGCACATAA
* * * *
14616963 CACCATGATTTTGTCCTAATTTGGACAGCCAATAATTTACAGTATTACAGCAGCATATTAATTAG
1 CACCATAAATTTGTCCTAATTTGGACAGCCAATAATTTACAGCATTACAGCAGCAAATTAATTAG
14617028 CTAAG
66 CTAAG
*
14617033 CACCATAAATTTGTCCTAATTTGGACAGCCAATAATTTACAGCATTACAGTAGCAAATTAATTAG
1 CACCATAAATTTGTCCTAATTTGGACAGCCAATAATTTACAGCATTACAGCAGCAAATTAATTAG
14617098 TAATAAACTA
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
70 60 1.00
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.32
Consensus pattern (70 bp):
CACCATAAATTTGTCCTAATTTGGACAGCCAATAATTTACAGCATTACAGCAGCAAATTAATTAG
CTAAG
Found at i:14622826 original size:43 final size:43
Alignment explanation
Indices: 14622776--14622932 Score: 215
Period size: 43 Copynumber: 3.6 Consensus size: 43
14622766 CCAGCATTTC
**
14622776 GCCTGCTAGGCTTGAAGCCCGATATCATTTCACCGGTATTATA
1 GCCTGCTAGGCCCGAAGCCCGATATCATTTCACCGGTATTATA
* * * * *
14622819 GCCTGCTAGGCTCGAGGCTCGATATTATCTCACCGGTATTATA
1 GCCTGCTAGGCCCGAAGCCCGATATCATTTCACCGGTATTATA
* * *
14622862 GCCTGCTAGGCCCGAAGCCAGATATAATTTCACCGGGATTATA
1 GCCTGCTAGGCCCGAAGCCCGATATCATTTCACCGGTATTATA
14622905 GCCTGCTAGGCCCGAAGCCCGTATATCA
1 GCCTGCTAGGCCCGAAGCCCG-ATATCA
14622933 CATTTCGATA
Statistics
Matches: 99, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
43 94 0.95
44 5 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (43 bp):
GCCTGCTAGGCCCGAAGCCCGATATCATTTCACCGGTATTATA
Found at i:14626351 original size:68 final size:65
Alignment explanation
Indices: 14626279--14626428 Score: 167
Period size: 64 Copynumber: 2.2 Consensus size: 65
14626269 CATCATGTGT
** * *
14626279 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGT-GTACACCAT
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCATGATACCATGTAGGACACCAT
14626343 GTAG
62 GTAG
** * *
14626347 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCATGGTTCCATGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCATGATACCATGT--AGGACACCATGT
14626412 AG
64 AG
14626414 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
14626429 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 26 0.37
65 3 0.04
66 2 0.03
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.22
Consensus pattern (65 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCATGATACCATGTAGGACACCATGTAG
Found at i:14626384 original size:64 final size:64
Alignment explanation
Indices: 14626303--14626474 Score: 195
Period size: 67 Copynumber: 2.7 Consensus size: 64
14626293 AGACATTATG
* * *
14626303 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
** * * *
14626367 ATGTAGCTAGGTCGCATGCATGGTTCCATGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGT---GTACACCATGTAGACAAGAGAGCTACGAGAT
14626432 AA
63 AA
* * *
14626434 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGT
14626475 GTACAAGGGA
Statistics
Matches: 88, Mismatches: 16, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
63 9 0.10
64 26 0.30
66 20 0.23
67 31 0.35
68 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:14629105 original size:27 final size:26
Alignment explanation
Indices: 14629068--14629153 Score: 93
Period size: 27 Copynumber: 3.2 Consensus size: 26
14629058 AGCATGGTTG
*
14629068 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
* *
14629094 CCAGATACAGATATTGTGGCGGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
* *
14629121 ACAGAACAGATATTTGTGGCATG-GCCA
1 CCAGAACAGATA-TTGTGACA-GAGCCA
14629148 CCAGAA
1 CCAGAA
14629154 TGCTTCCTCC
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
26 12 0.24
27 38 0.75
28 1 0.02
ACGTcount: A:0.35, C:0.21, G:0.26, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:14632357 original size:43 final size:43
Alignment explanation
Indices: 14632288--14632379 Score: 109
Period size: 43 Copynumber: 2.1 Consensus size: 43
14632278 AGTAAGTCCA
* **
14632288 TGGCATCGATTTGTGTTTACGAGTAAGACC-CAGTCTGGGACAG-
1 TGGCATCGATATGTGGCTACGAGTAAGACCAC-GTCTGGGAC-GT
14632331 TGGCATCGATATGTGGCTAC-ATGTAAGACCACGTCTGGGACGT
1 TGGCATCGATATGTGGCTACGA-GTAAGACCACGTCTGGGACGT
14632374 TGGCAT
1 TGGCAT
14632380 TGTACGATAT
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
42 2 0.05
43 40 0.93
44 1 0.02
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.27
Consensus pattern (43 bp):
TGGCATCGATATGTGGCTACGAGTAAGACCACGTCTGGGACGT
Found at i:14638814 original size:28 final size:29
Alignment explanation
Indices: 14638778--14638832 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 29
14638768 ATTAAACAAC
*
14638778 AATTAGACA-ACTTAAATGACACTAACCA
1 AATTAGACATACTTAAATGAAACTAACCA
* * *
14638806 AATTGGACATATTTAATTGAAACTAAC
1 AATTAGACATACTTAAATGAAACTAAC
14638833 TAGCATATTA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
28 8 0.36
29 14 0.64
ACGTcount: A:0.47, C:0.16, G:0.09, T:0.27
Consensus pattern (29 bp):
AATTAGACATACTTAAATGAAACTAACCA
Found at i:14639024 original size:30 final size:31
Alignment explanation
Indices: 14638966--14639025 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
14638956 ATTGTAAAAG
* *
14638966 AAATAAGCTGGAAATAAGCTAAATTGAGCTC
1 AAATAAGCTGGAAACAAGCTAAAGTGAGCTC
*
14638997 AAATAAGCT-GAAACAAGCTCAAGTGAGCT
1 AAATAAGCTGGAAACAAGCTAAAGTGAGCT
14639026 GATTGGAGCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 17 0.65
31 9 0.35
ACGTcount: A:0.45, C:0.15, G:0.20, T:0.20
Consensus pattern (31 bp):
AAATAAGCTGGAAACAAGCTAAAGTGAGCTC
Found at i:14642067 original size:15 final size:15
Alignment explanation
Indices: 14642034--14642118 Score: 54
Period size: 15 Copynumber: 5.7 Consensus size: 15
14642024 TTTCTATTTT
*
14642034 CTTTTTCTTGT-TCA
1 CTTTTTCTTTTCTCA
14642048 TCTTTTTCTTTTCTCA
1 -CTTTTTCTTTTCTCA
*
14642064 C--TTTCTTTTCTCT
1 CTTTTTCTTTTCTCA
* *
14642077 CTCTTTTGCTATTCT-G
1 CT-TTTT-CTTTTCTCA
*
14642093 TTTTTTCTTTTTCTCA
1 CTTTTTC-TTTTCTCA
14642109 C-TTTTCTTTT
1 CTTTTTCTTTT
14642119 TTTTTTCACA
Statistics
Matches: 55, Mismatches: 8, Indels: 15
0.71 0.10 0.19
Matches are distributed among these distances:
13 12 0.22
14 5 0.09
15 25 0.45
16 7 0.13
17 6 0.11
ACGTcount: A:0.05, C:0.24, G:0.04, T:0.68
Consensus pattern (15 bp):
CTTTTTCTTTTCTCA
Found at i:14642118 original size:21 final size:21
Alignment explanation
Indices: 14642094--14642148 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
14642084 GCTATTCTGT
14642094 TTTTTCTTTTTCTCACTT-TTC
1 TTTTTCTTTTTCTCA-TTATTC
*
14642115 TTTTT-TTTTTCACATTCATTC
1 TTTTTCTTTTTCTCATT-ATTC
14642136 -TTTTCTTTTTCTC
1 TTTTTCTTTTTCTC
14642149 TCAATTGATT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
19 2 0.07
20 12 0.41
21 15 0.52
ACGTcount: A:0.07, C:0.22, G:0.00, T:0.71
Consensus pattern (21 bp):
TTTTTCTTTTTCTCATTATTC
Found at i:14644511 original size:28 final size:29
Alignment explanation
Indices: 14644475--14644531 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
14644465 ATTAAACAAC
*
14644475 AATTAGACA-ACTTAAATGACACTAACTA
1 AATTAGACATACTTAAATGAAACTAACTA
* * *
14644503 AATTGGACATATTTAATTGAAACTAACTA
1 AATTAGACATACTTAAATGAAACTAACTA
14644532 GCATATTAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 8 0.33
29 16 0.67
ACGTcount: A:0.47, C:0.14, G:0.09, T:0.30
Consensus pattern (29 bp):
AATTAGACATACTTAAATGAAACTAACTA
Found at i:14647155 original size:50 final size:49
Alignment explanation
Indices: 14647033--14647208 Score: 154
Period size: 50 Copynumber: 3.5 Consensus size: 49
14647023 TGAGGTCGCA
* *** ** * *
14647033 TGTGTAGTACTAAGAGCAGGCTACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACAGGATAA--TAGGTCACG
* * * * *
14647084 TGTGTAGTATTAAGCGTAGGCTACTACGTGTACAGGATGGATAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACAGGAT-AATAGGTCACG
* * * * *
14647134 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGACGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACAGGATAATAGGTCACG
*
14647183 TGTGTAGTACTAAGTGCATGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
14647209 TGAGTACCAG
Statistics
Matches: 103, Mismatches: 21, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
49 31 0.30
50 40 0.39
51 31 0.30
52 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACATGTACAGGATAATAGGTCACG
Found at i:14647197 original size:49 final size:49
Alignment explanation
Indices: 14647031--14647222 Score: 177
Period size: 49 Copynumber: 3.9 Consensus size: 49
14647021 TTTGAGGTCG
* * * * *
14647031 CATGTGTAGTACTAAGAGCAGGCTACTATGCGTACCCGATAACTTCGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TTGGA-CA
* * * * * * * *
14647082 CGTGTGTAGTATTAAGCGTAGGCTACTACGTGTACAGGATGGATAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGAT-AATTGGACA
* * *
14647132 CGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGACG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGACA
* * * *
14647181 CATGTGTAGTACTAAGTGCATGCTACTATGAGTACCAGATAA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA
14647223 CCTTGTCCAC
Statistics
Matches: 113, Mismatches: 27, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
49 41 0.36
50 37 0.33
51 34 0.30
52 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (49 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGACA
Found at i:14647280 original size:52 final size:52
Alignment explanation
Indices: 14647223--14647326 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
14647213 TACCAGATAA
*
14647223 CCTTGTCCACAAGTGTGAAAATATGTGCAGGCGACTGAGTATCAGTTATTAT
1 CCTTGTCCACAAGTGTGAAAATATGTGCAGGCAACTGAGTATCAGTTATTAT
14647275 CCTTGTCCACAAGTGTGAAAATATGTGCAGGCAACTGAGTATCAGTTATTAT
1 CCTTGTCCACAAGTGTGAAAATATGTGCAGGCAACTGAGTATCAGTTATTAT
14647327 TCCGAAGGGT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (52 bp):
CCTTGTCCACAAGTGTGAAAATATGTGCAGGCAACTGAGTATCAGTTATTAT
Found at i:14651555 original size:163 final size:163
Alignment explanation
Indices: 14651285--14651934 Score: 1237
Period size: 163 Copynumber: 4.0 Consensus size: 163
14651275 TTGAGATCCG
* * * *
14651285 GGTTTTATGTCATGATATCATGGAAAACTAAGAAGCCTTTGAAAATTTAAAAACAATTGGAAGTT
1 GGTTTTATGTCATGATATCATGGGAAACTGAGAAGCCTCTGAAAATTTAAAAACAATTGGGAGTT
14651350 GAGTCCGTAAGCTTTCAAATCATATGAGAAATTAAAGAGATGTATTGGAGGCACCACCTGAGCGA
66 GAGTCCGTAAGCTTTCAAATCATATGAGAAATTAAAGAGATGTATTGGAGGCACCACCTGAGCGA
14651415 AGGTACTTTGGTATCAAGTATGAGATTGAGGCA
131 AGGTACTTTGGTATCAAGTATGAGATTGAGGCA
14651448 GGTTTTATGTCATGATATCATGGGAAACTGAGAAGCCTCTGAAAATTTAAAAACAATTGGGAGTT
1 GGTTTTATGTCATGATATCATGGGAAACTGAGAAGCCTCTGAAAATTTAAAAACAATTGGGAGTT
14651513 GAGTCCGTAAGCTTTCAAATCATATGAGAAATTAAAGAGATGTATTGGAGGCACCACCTGAGCGA
66 GAGTCCGTAAGCTTTCAAATCATATGAGAAATTAAAGAGATGTATTGGAGGCACCACCTGAGCGA
*
14651578 AGGTACTTTGGTATCAAGTATGAGATTGAGGAA
131 AGGTACTTTGGTATCAAGTATGAGATTGAGGCA
*
14651611 GGTTTTATGTCATGATATCATGGGAAACTGAGAAGCCTTTGAAAATTTAAAAACAATTGGGAGTT
1 GGTTTTATGTCATGATATCATGGGAAACTGAGAAGCCTCTGAAAATTTAAAAACAATTGGGAGTT
14651676 GAGTCCGTAAGCTTTCAAATCATATGAGAAATTAAAGAGATGTATTGGAGGCACCACCTGAGCGA
66 GAGTCCGTAAGCTTTCAAATCATATGAGAAATTAAAGAGATGTATTGGAGGCACCACCTGAGCGA
14651741 AGGTACTTTGGTATCAAGTATGAGATTGAGGCA
131 AGGTACTTTGGTATCAAGTATGAGATTGAGGCA
14651774 GGTTTTATGTCATGATATCATGGGAAACTGAGAAGCCTCTGAAAATTTAAAAACAATTGGGAGTT
1 GGTTTTATGTCATGATATCATGGGAAACTGAGAAGCCTCTGAAAATTTAAAAACAATTGGGAGTT
*
14651839 GAGTCCGTAAGCTTTCAAATCATATGAGAAATTAAAGAGATGTATTGGAGGCACCACCTGAGCTA
66 GAGTCCGTAAGCTTTCAAATCATATGAGAAATTAAAGAGATGTATTGGAGGCACCACCTGAGCGA
14651904 AGGTACTTTGGTATCAAGTATGAGATTGAGG
131 AGGTACTTTGGTATCAAGTATGAGATTGAGG
14651935 AATCTAAGTA
Statistics
Matches: 478, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
163 478 1.00
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.28
Consensus pattern (163 bp):
GGTTTTATGTCATGATATCATGGGAAACTGAGAAGCCTCTGAAAATTTAAAAACAATTGGGAGTT
GAGTCCGTAAGCTTTCAAATCATATGAGAAATTAAAGAGATGTATTGGAGGCACCACCTGAGCGA
AGGTACTTTGGTATCAAGTATGAGATTGAGGCA
Found at i:14653191 original size:27 final size:27
Alignment explanation
Indices: 14653150--14653203 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
14653140 GAAAATGTGA
* *
14653150 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
14653177 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
14653204 GGTTGTACCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:14653561 original size:50 final size:49
Alignment explanation
Indices: 14653437--14653625 Score: 198
Period size: 50 Copynumber: 3.8 Consensus size: 49
14653427 TGAGGTCGCA
* ** * * *
14653437 TGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAA-TT-GGTCACG
**
14653488 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATT-GGTCACG
* * * * * *
14653538 TGTGTAGTACTACGTGCAAGCTACTACGTGTATCGGGTAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTCACG
* * *
14653587 TGTGTAGTACTAAGTACAGGCTACTACGAGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATA
14653626 GCCTTGTCCA
Statistics
Matches: 114, Mismatches: 24, Indels: 2
0.81 0.17 0.01
Matches are distributed among these distances:
49 37 0.32
50 44 0.39
51 33 0.29
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTCACG
Found at i:14657771 original size:60 final size:59
Alignment explanation
Indices: 14657658--14657787 Score: 156
Period size: 60 Copynumber: 2.2 Consensus size: 59
14657648 AACTGGGACT
* *
14657658 TAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATATTGGGCC
1 TAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAG-ATCAGAGTATATTGGGCC
* * *
14657718 TAGCCCATATCAGTATCAATCTGGGCCGTAGCCTTATTACA-AGTC-GAGATATATTGGGCC
1 TAGCCCATATCAATATCAATCTGGGCCATAGCC-CATTACAGA-TCAGAG-TATATTGGGCC
*
14657778 TTGCCCATAT
1 TAGCCCATAT
14657788 TAACATAGTT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
59 4 0.07
60 52 0.85
61 5 0.08
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (59 bp):
TAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGATCAGAGTATATTGGGCC
Found at i:14662084 original size:60 final size:60
Alignment explanation
Indices: 14662011--14662147 Score: 154
Period size: 60 Copynumber: 2.3 Consensus size: 60
14662001 TAGTGTTAAC
* *
14662011 TGGGCCTTAGCCCATATCAATATTAATCTAGGCCA-TAGCCC-CTTACAATATC-AGAGTATAT
1 TGGGCC-TAGCCCATATCAATATCAATCT-GGCCAGTAGCCCTATTACAA-ATCGAGA-TATAT
* * *
14662072 TGGGCCTAGCCCATATCAGTATCAATCTGGGCAGTAGCCCTATTACAAGTCGAGATATAT
1 TGGGCCTAGCCCATATCAATATCAATCTGGCCAGTAGCCCTATTACAAATCGAGATATAT
* *
14662132 TGGGCCTTGCCTATAT
1 TGGGCCTAGCCCATAT
14662148 TAACATAGTT
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
59 4 0.06
60 47 0.71
61 15 0.23
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (60 bp):
TGGGCCTAGCCCATATCAATATCAATCTGGCCAGTAGCCCTATTACAAATCGAGATATAT
Found at i:14665412 original size:37 final size:37
Alignment explanation
Indices: 14665359--14665461 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
14665349 CGAATAGTCC
* *
14665359 CCACACGTAGTTATCGGGTCTTACCCGGGCAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
14665396 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
14665433 CCATACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
14665462 ATATATTTCC
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:14665665 original size:50 final size:50
Alignment explanation
Indices: 14665611--14665799 Score: 319
Period size: 50 Copynumber: 3.8 Consensus size: 50
14665601 CATCTCCTAC
*
14665611 ATATTTCACGCTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
14665661 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
* *
14665711 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATAC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
* *
14665759 ATATTTCACATTAGCCATTCGGCTTTACTACATATACATAT
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATAT
14665800 ATATTTATCT
Statistics
Matches: 135, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
48 43 0.32
50 92 0.68
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (50 bp):
ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
Found at i:14665726 original size:100 final size:98
Alignment explanation
Indices: 14665611--14665799 Score: 315
Period size: 98 Copynumber: 1.9 Consensus size: 98
14665601 CATCTCCTAC
* *
14665611 ATATTTCACGCTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACACTAGC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACACTAGC
14665676 CATTCGGCTTTACCACATATACATATCTCATATAT
64 CATTCGGCTTTACCACATATACATATCTCATATAT
* *
14665711 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
*
14665776 TTCGGCTTTACTACATATACATAT
66 TTCGGCTTTACCACATATACATAT
14665800 ATATTTATCT
Statistics
Matches: 84, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
98 42 0.50
100 42 0.50
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (98 bp):
ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
TTCGGCTTTACCACATATACATATCTCATATAT
Found at i:14669190 original size:40 final size:40
Alignment explanation
Indices: 14669146--14669934 Score: 1533
Period size: 40 Copynumber: 19.7 Consensus size: 40
14669136 CGAGCATGAT
* * *
14669146 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACCCCAGCACAAA
14669186 TGCTCTTCGGGACTTAGCCCGGATATAACCCCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACCCCAGCACAAA
14669226 TGCTCTTCGGGACTTAGCCCGGATATAACCCCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACCCCAGCACAAA
14669266 TGCTCTTCGGGACTTAGCCCGGATATAACCCCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACCCCAGCACAAA
14669306 TGCTCTTCGGGACTTAGCCCGGATATAACCCCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACCCCAGCACAAA
14669346 TGCTCTTCGGGACTTAGCCCGGATATAACCCCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACCCCAGCACAAA
14669386 TGCTCTTCGGGACTTAGCCCGGATATAACCCCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACCCCAGCACAAA
14669426 TGCTCTTCGGGACTTAGCCCGGATATAACCCCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACCCCAGCACAAA
14669466 TGCTCTTCGGGACTTAGCCCGGATATAACCCCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACCCCAGCACAAA
14669506 TGCTCTTCGGGACTTAGCCCGGATATAACCCCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACCCCAGCACAAA
14669546 TGCTCTTCGGGACTTAGCCCGGATATAACCCCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACCCCAGCACAAA
14669586 TGCTCTTCGGGACTTAGCCCGGATATAACCCCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACCCCAGCACAAA
14669626 TGCTCTTCGGGACTTAGCCCGGATATAACCCCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACCCCAGCACAAA
14669666 TGCTCTTCGGGACTTAGCCCGGATATAACCCCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACCCCAGCACAAA
14669706 TGCTCTTCGGGACTTAGCCCGGATATAACCCCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACCCCAGCACAAA
14669746 TGCTCTTCGGGACTTAGCCCGGATATAACCCCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACCCCAGCACAAA
14669786 TGCTCTTCGGGACTTAGCCCGGATATAACCCCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACCCCAGCACAAA
14669826 TGCTCTTCGGGACTTAGCCCGGATATAACCCCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACCCCAGCACAAA
* *
14669866 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACCCCAGCACAAA
14669906 TGCTCTTCGGGACTTAGCCCGGATATAAC
1 TGCTCTTCGGGACTTAGCCCGGATATAAC
14669935 TCTCAATTCT
Statistics
Matches: 744, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 744 1.00
ACGTcount: A:0.27, C:0.32, G:0.20, T:0.20
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATAACCCCAGCACAAA
Found at i:14670120 original size:37 final size:37
Alignment explanation
Indices: 14670079--14670152 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
14670069 TAGTCGTAAC
*
14670079 ACTCTTTGAAAATTGCATCACTTATACCCTTATAATT
1 ACTCTTTCAAAATTGCATCACTTATACCCTTATAATT
14670116 ACTCTTTCAAAATTGCATCACTTATACCCTTATAATT
1 ACTCTTTCAAAATTGCATCACTTATACCCTTATAATT
14670153 CAATCCAAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.32, C:0.23, G:0.04, T:0.41
Consensus pattern (37 bp):
ACTCTTTCAAAATTGCATCACTTATACCCTTATAATT
Found at i:14671296 original size:36 final size:37
Alignment explanation
Indices: 14671244--14671345 Score: 161
Period size: 37 Copynumber: 2.8 Consensus size: 37
14671234 CGAATAGTCC
*
14671244 CCACACATAGTTATCGGGTCTTACCCGG-CAAAATCT
1 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
* *
14671280 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
*
14671317 CAACACGTAGTTATCGGGTCTTACCCGGA
1 CCACACGTAGTTATCGGGTCTTACCCGGA
14671346 ATATATTTCC
Statistics
Matches: 60, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
36 26 0.43
37 34 0.57
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (37 bp):
CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
Found at i:14671544 original size:48 final size:48
Alignment explanation
Indices: 14671486--14672451 Score: 1833
Period size: 48 Copynumber: 20.0 Consensus size: 48
14671476 ATATACACAC
* **
14671486 ATCTCCTACATATTTCACGCTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
14671534 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
14671582 ATCTCATATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
14671632 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
14671682 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
14671730 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
14671778 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
14671826 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
14671874 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
14671922 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
14671970 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
14672018 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
14672066 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
14672114 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
14672162 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
14672210 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
14672258 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
14672306 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
14672354 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
14672402 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
14672450 AT
1 AT
14672452 ATATTTATCT
Statistics
Matches: 911, Mismatches: 5, Indels: 4
0.99 0.01 0.00
Matches are distributed among these distances:
48 815 0.89
50 96 0.11
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:14675931 original size:40 final size:40
Alignment explanation
Indices: 14675874--14676914 Score: 1886
Period size: 40 Copynumber: 26.1 Consensus size: 40
14675864 CGAATACACG
* * * * *
14675874 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
* * * * ** * *
14675914 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
* * *
14675954 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
*
14675994 TCACCAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
14676034 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
14676074 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
14676114 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
14676154 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
14676194 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
14676234 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
14676274 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
14676314 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
14676354 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
14676394 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
14676434 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
14676474 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
14676514 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
14676554 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
14676594 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
14676634 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
14676674 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
14676714 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
14676754 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
14676794 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
* *
14676834 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCAGATACA
1 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
* *
14676874 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT-CA
1 TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
14676913 TC
1 TC
14676915 GTCGAGACCT
Statistics
Matches: 978, Mismatches: 23, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
39 4 0.00
40 974 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
TCACTAGCATGAATGCACTTCGGGACTTAGCCCGGATACA
Found at i:14677037 original size:38 final size:38
Alignment explanation
Indices: 14676968--14677042 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
14676958 GAATTTTAAT
*
14676968 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
* *
14677006 CCGGACATAATCTCT-TCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTGT-ACATAGCCAGCGGGTCTTTA
14677043 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
Found at i:14683559 original size:237 final size:237
Alignment explanation
Indices: 14683144--14683618 Score: 950
Period size: 237 Copynumber: 2.0 Consensus size: 237
14683134 ATTCTAGTCG
14683144 TTCCAAATATCCAAGCCCTCAATTAGTAGCCTTTAATCCACGCTATAGGAAAAGAGTGCCTTTCG
1 TTCCAAATATCCAAGCCCTCAATTAGTAGCCTTTAATCCACGCTATAGGAAAAGAGTGCCTTTCG
14683209 GCATAGTAATTCTTTTTAAATTCCAATTCCATAATTTGCTCCTTGATTTGGCCAAATTCGAAGTT
66 GCATAGTAATTCTTTTTAAATTCCAATTCCATAATTTGCTCCTTGATTTGGCCAAATTCGAAGTT
14683274 TGAATTTCATTCAAACTCCCAACCGATCAGCAGCCTTATCCACCTGCTTGCATCGCTTCATCATG
131 TGAATTTCATTCAAACTCCCAACCGATCAGCAGCCTTATCCACCTGCTTGCATCGCTTCATCATG
14683339 CTGCCAAGAGTCCTGGTCAGACCCCAATTCCTTCCCCACGCA
196 CTGCCAAGAGTCCTGGTCAGACCCCAATTCCTTCCCCACGCA
14683381 TTCCAAATATCCAAGCCCTCAATTAGTAGCCTTTAATCCACGCTATAGGAAAAGAGTGCCTTTCG
1 TTCCAAATATCCAAGCCCTCAATTAGTAGCCTTTAATCCACGCTATAGGAAAAGAGTGCCTTTCG
14683446 GCATAGTAATTCTTTTTAAATTCCAATTCCATAATTTGCTCCTTGATTTGGCCAAATTCGAAGTT
66 GCATAGTAATTCTTTTTAAATTCCAATTCCATAATTTGCTCCTTGATTTGGCCAAATTCGAAGTT
14683511 TGAATTTCATTCAAACTCCCAACCGATCAGCAGCCTTATCCACCTGCTTGCATCGCTTCATCATG
131 TGAATTTCATTCAAACTCCCAACCGATCAGCAGCCTTATCCACCTGCTTGCATCGCTTCATCATG
14683576 CTGCCAAGAGTCCTGGTCAGACCCCAATTCCTTCCCCACGCA
196 CTGCCAAGAGTCCTGGTCAGACCCCAATTCCTTCCCCACGCA
14683618 T
1 T
14683619 GCAGCAAAAA
Statistics
Matches: 238, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
237 238 1.00
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.31
Consensus pattern (237 bp):
TTCCAAATATCCAAGCCCTCAATTAGTAGCCTTTAATCCACGCTATAGGAAAAGAGTGCCTTTCG
GCATAGTAATTCTTTTTAAATTCCAATTCCATAATTTGCTCCTTGATTTGGCCAAATTCGAAGTT
TGAATTTCATTCAAACTCCCAACCGATCAGCAGCCTTATCCACCTGCTTGCATCGCTTCATCATG
CTGCCAAGAGTCCTGGTCAGACCCCAATTCCTTCCCCACGCA
Found at i:14695074 original size:27 final size:27
Alignment explanation
Indices: 14695039--14695217 Score: 184
Period size: 27 Copynumber: 6.6 Consensus size: 27
14695029 TTAAATTGTA
14695039 TAGCACTAAGTGTGCGATATGACTATG
1 TAGCACTAAGTGTGCGATATGACTATG
* * *
14695066 TTGCACTAAGTGTGCGAAATGAATATG
1 TAGCACTAAGTGTGCGATATGACTATG
*
14695093 -ATGCACTAAGTGTGCGA-ATTGACCATG
1 TA-GCACTAAGTGTGCGATA-TGACTATG
** *
14695120 CGGCACTAAGTGTGCGAGTTTGACTATG
1 TAGCACTAAGTGTGCGA-TATGACTATG
* * *
14695148 TAGCACTAAGTGTGCGATTTGATTACG
1 TAGCACTAAGTGTGCGATATGACTATG
* *
14695175 TAGCACTAAGTGTGCGAGT-TGATTATA
1 TAGCACTAAGTGTGCGA-TATGACTATG
*
14695202 TAGCACTGAGTGTGCG
1 TAGCACTAAGTGTGCG
14695218 GGCTCAATAT
Statistics
Matches: 130, Mismatches: 16, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
26 1 0.01
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
TAGCACTAAGTGTGCGATATGACTATG
Found at i:14695155 original size:82 final size:81
Alignment explanation
Indices: 14695041--14695196 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
14695031 AAATTGTATA
* *
14695041 GCACTAAGTGTGCGATATGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
14695105 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
14695122 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
14695187 TGCGAGTTGA
65 TGCGAATTGA
14695197 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:14695208 original size:82 final size:81
Alignment explanation
Indices: 14695037--14695217 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
14695027 GATTAAATTG
* *
14695037 TATAGCACTAAGTGTGCGATATGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TATAGCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
14695102 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
*** * ** *
14695118 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TATAGCACTAAGTGTGCGA-TATGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
14695182 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
*
14695200 TATAGCACTGAGTGTGCG
1 TATAGCACTAAGTGTGCG
14695218 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 17 0.21
82 65 0.79
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TATAGCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:14703037 original size:28 final size:27
Alignment explanation
Indices: 14702980--14703131 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
14702970 TAAATTGTGC
*
14702980 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
14703007 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
14703035 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
14703062 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
14703090 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
14703117 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
14703132 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:14703045 original size:55 final size:55
Alignment explanation
Indices: 14702980--14703131 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
14702970 TAAATTGTGC
*
14702980 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
14703035 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
14703090 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
14703132 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:14708043 original size:27 final size:27
Alignment explanation
Indices: 14708012--14708189 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
14708002 TAAATTGTAC
14708012 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
14708039 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
14708065 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
14708093 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
14708121 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
14708148 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
14708175 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
14708190 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:14708126 original size:82 final size:81
Alignment explanation
Indices: 14708013--14708168 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
14708003 AAATTGTACA
* *
14708013 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
14708077 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
14708094 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
14708159 TGCGAGTTGA
65 TGCGAATTGA
14708169 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:14708180 original size:82 final size:81
Alignment explanation
Indices: 14708009--14708189 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
14707999 GATTAAATTG
* *
14708009 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
14708074 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
14708090 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
14708154 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
14708172 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
14708190 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:14710765 original size:25 final size:25
Alignment explanation
Indices: 14710736--14710783 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
14710726 TTATAATATG
* * *
14710736 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
14710761 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
14710784 GTTTAAATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:14710848 original size:20 final size:20
Alignment explanation
Indices: 14710819--14710865 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
14710809 ATTTTGATAA
*
14710819 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
14710839 ACATGATATGTATGCTATGC
1 ACATGATATGTATGATATGC
14710859 ACATGAT
1 ACATGAT
14710866 GTATTCATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:14710973 original size:24 final size:24
Alignment explanation
Indices: 14710914--14711034 Score: 165
Period size: 24 Copynumber: 5.0 Consensus size: 24
14710904 GGAGGAAGTG
14710914 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
14710938 GATAAAGGGCTTATGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
14710963 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
14710987 TAAAAAGGCTT-TGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
* *
14711010 TGAAAGAGGC-TAGGCCTCCAGTTAT
1 TAAAAG-GGCTTATGCC-CCAGTTAT
14711035 ATGAAAAAGC
Statistics
Matches: 87, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
23 17 0.20
24 39 0.45
25 31 0.36
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:14710986 original size:49 final size:47
Alignment explanation
Indices: 14710914--14711043 Score: 163
Period size: 49 Copynumber: 2.7 Consensus size: 47
14710904 GGAGGAAGTG
*
14710914 TAAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTATGA-AAAAGGCTT-TGCCCCAGTTAT
*
14710963 TAAAAGGGCTTATGCCCCAGTTATTAAAAAGGCTTTGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTATGAAAAAGGCTTTGCCCCAGTTAT
* *
14711010 TGAAAGAGGC-TAGGCCTCCAGTTATATGAAAAAG
1 TAAAAG-GGCTTATGCC-CCAG-T-TATGAAAAAG
14711044 CAGCTATGCT
Statistics
Matches: 72, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
47 22 0.31
48 15 0.21
49 26 0.36
50 9 0.12
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (47 bp):
TAAAAGGGCTTATGCCCCAGTTATGAAAAAGGCTTTGCCCCAGTTAT
Found at i:14711282 original size:31 final size:31
Alignment explanation
Indices: 14711228--14711288 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
14711218 CGTTTACAGT
* *
14711228 AAAGGCTTTGGCCCAGTAATATGAGATATGG
1 AAAGGCTTCGGCCCAGTAATATGAAATATGG
**
14711259 AAAGGCTTCGGCCCAGTGTTATGAAATATG
1 AAAGGCTTCGGCCCAGTAATATGAAATATG
14711289 AAATATGAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGG
Found at i:14719487 original size:60 final size:59
Alignment explanation
Indices: 14719363--14719499 Score: 152
Period size: 60 Copynumber: 2.3 Consensus size: 59
14719353 CAGAGTTAAC
* *
14719363 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATAT
1 TGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAG-ATCAGAGTATAT
* * * *
14719424 TGGGCCTAGCCCATATCAGTGTCAATCTGGGCCGTAGCCCTATTACA-AGTC-GAGATATGT
1 TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCC-ATTACAGA-TCAGAG-TATAT
*
14719484 TGGGCCTTGCCCATAT
1 TGGGCCTAGCCCATAT
14719500 TAACACAGTT
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
59 4 0.06
60 51 0.77
61 11 0.17
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (59 bp):
TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGATCAGAGTATAT
Found at i:14719517 original size:20 final size:20
Alignment explanation
Indices: 14719492--14719537 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
14719482 GTTGGGCCTT
14719492 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
14719512 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
14719531 GCCCATA
1 GCCCATA
14719538 ACAAAACTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:14721929 original size:18 final size:19
Alignment explanation
Indices: 14721906--14721942 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
14721896 AGGCCTCTTG
*
14721906 GGTA-TTTATTTTTAATTT
1 GGTATTTTACTTTTAATTT
14721924 GGTATTTTACTTTTAATTT
1 GGTATTTTACTTTTAATTT
14721943 TTGGATTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.22, C:0.03, G:0.11, T:0.65
Consensus pattern (19 bp):
GGTATTTTACTTTTAATTT
Found at i:14734682 original size:27 final size:26
Alignment explanation
Indices: 14734625--14734739 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 26
14734615 CAGCGTTGCT
* * *
14734625 ACCAGAACAGATAATCTGACAGAGTC
1 ACCAGAACAGATAATGTGGCAGAGCC
*
14734651 ACCAGAACAGATACTTGTGGCAGAGCC
1 ACCAGAACAGATA-ATGTGGCAGAGCC
*
14734678 ACCAGAATAGATATATGTGGCAGAGCC
1 ACCAGAACAGATA-ATGTGGCAGAGCC
* *
14734705 ACCAGATCAGATAAATGTGGCATAGCC
1 ACCAGAACAGAT-AATGTGGCAGAGCC
14734732 ACCAGAAC
1 ACCAGAAC
14734740 GCTTCCTCCA
Statistics
Matches: 76, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
26 13 0.17
27 62 0.82
28 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (26 bp):
ACCAGAACAGATAATGTGGCAGAGCC
Found at i:14736173 original size:24 final size:24
Alignment explanation
Indices: 14736138--14736237 Score: 146
Period size: 24 Copynumber: 4.2 Consensus size: 24
14736128 CCAAAACTGT
* *
14736138 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
* *
14736162 TCTCCCTTATCAGCTCCTAAACCC
1 TCTCCCTTATCAACTCCTAAATCC
*
14736186 TATCCCTTATCAACTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
14736210 TATCCCTTATCAACTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
14736234 TCTC
1 TCTC
14736238 TTGACAGACT
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 70 1.00
ACGTcount: A:0.25, C:0.41, G:0.02, T:0.32
Consensus pattern (24 bp):
TCTCCCTTATCAACTCCTAAATCC
Found at i:14741058 original size:23 final size:23
Alignment explanation
Indices: 14741018--14741098 Score: 92
Period size: 23 Copynumber: 3.4 Consensus size: 23
14741008 CAACTCATAT
* *
14741018 GAGCTTACTG-TTCAGCTCGATA
1 GAGCTTACCGTTTCAGCTCAATA
14741040 GAGCTTACCGTTTCAGCTCAATA
1 GAGCTTACCGTTTCAGCTCAATA
* *
14741063 GAGCTTACTGTTCATCAGCTCAAGA
1 GAGCTTACCGTT--TCAGCTCAATA
14741088 GGAGCTTACCG
1 -GAGCTTACCG
14741099 ATCATGGCTC
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
22 9 0.18
23 22 0.44
25 10 0.20
26 9 0.18
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (23 bp):
GAGCTTACCGTTTCAGCTCAATA
Found at i:14741102 original size:23 final size:23
Alignment explanation
Indices: 14741005--14741116 Score: 86
Period size: 23 Copynumber: 4.7 Consensus size: 23
14740995 CTTACCGATA
* *
14741005 TATCAACTC-ATATGAGCTTACTG
1 TATCAGCTCAATA-GAGCTTACCG
*
14741028 T-TCAGCTCGATAGAGCTTACCG
1 TATCAGCTCAATAGAGCTTACCG
* *
14741050 TTTCAGCTCAATAGAGCTTACTG
1 TATCAGCTCAATAGAGCTTACCG
*
14741073 TTCATCAGCTCAAGAGGAGCTTACCG
1 -T-ATCAGCTCAATA-GAGCTTACCG
*
14741099 -ATCATGGCTCAAAAGAGC
1 TATCA--GCTCAATAGAGC
14741117 ATAAATGATA
Statistics
Matches: 74, Mismatches: 8, Indels: 13
0.78 0.08 0.14
Matches are distributed among these distances:
22 16 0.22
23 27 0.36
24 5 0.07
25 17 0.23
26 9 0.12
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.28
Consensus pattern (23 bp):
TATCAGCTCAATAGAGCTTACCG
Found at i:14741297 original size:20 final size:20
Alignment explanation
Indices: 14741242--14741285 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
14741232 ATAAGACATG
*
14741242 TGTTTATATGGATGAATTAC
1 TGTTGATATGGATGAATTAC
14741262 TGTTGATATGGATGAATTAC
1 TGTTGATATGGATGAATTAC
14741282 TGTT
1 TGTT
14741286 ATTACTGATG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.27, C:0.05, G:0.23, T:0.45
Consensus pattern (20 bp):
TGTTGATATGGATGAATTAC
Found at i:14748300 original size:46 final size:47
Alignment explanation
Indices: 14748191--14748308 Score: 145
Period size: 46 Copynumber: 2.5 Consensus size: 47
14748181 TCTCAACATT
*
14748191 GATGCATGTCCCAGA-ATGTCTTACACTGGCTTAAATATCACATGGCC
1 GATGCATGTTCCAGACATGTCTTACACTGGCTTAAATAT-ACATGGCC
* **
14748238 GATGCATG-TCCTAGACATGTCTTACACTGGCTCT-CATAT-TGTGGCC
1 GATGCATGTTCC-AGACATGTCTTACACTGGCT-TAAATATACATGGCC
14748284 GATGCATGTTCCAGACATGTCTTAC
1 GATGCATGTTCCAGACATGTCTTAC
14748309 GCTAGCACAC
Statistics
Matches: 63, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
46 28 0.44
47 14 0.22
48 20 0.32
49 1 0.02
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (47 bp):
GATGCATGTTCCAGACATGTCTTACACTGGCTTAAATATACATGGCC
Found at i:14750948 original size:42 final size:42
Alignment explanation
Indices: 14750876--14750985 Score: 132
Period size: 42 Copynumber: 2.6 Consensus size: 42
14750866 TCGTTTCAAT
* * *
14750876 GCCATATCCCTGATATGGTCTTACATGAAAT-ATCATATCGAC
1 GCCATATCCCTGATATGGTCTTATACGAAATCA-CATACCGAC
* * * *
14750918 GCCATGTTCCTGACATGGTCTTATACGAAATCACATACCGAG
1 GCCATATCCCTGATATGGTCTTATACGAAATCACATACCGAC
*
14750960 GCCATATCCCAGATATGGTCTTATAC
1 GCCATATCCCTGATATGGTCTTATAC
14750986 AGAATCTTAA
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
42 55 0.98
43 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (42 bp):
GCCATATCCCTGATATGGTCTTATACGAAATCACATACCGAC
Found at i:14754046 original size:28 final size:28
Alignment explanation
Indices: 14753983--14754304 Score: 547
Period size: 28 Copynumber: 11.5 Consensus size: 28
14753973 ATATTAAGTC
*
14753983 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
14754010 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
14754038 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
14754066 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
14754094 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
14754122 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
14754150 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
14754178 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
14754206 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
14754234 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * * *
14754262 CGCGCACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
*
14754291 CGTACACTTAGTGC
1 CGCACACTTAGTGC
14754305 CAATCTCATG
Statistics
Matches: 281, Mismatches: 12, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
27 21 0.07
28 243 0.86
29 17 0.06
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:14758817 original size:46 final size:45
Alignment explanation
Indices: 14758749--14758919 Score: 164
Period size: 46 Copynumber: 3.7 Consensus size: 45
14758739 TCGCGAGGCT
* * * *
14758749 GATGCATGTCCCAAATAAGTCTTACACTAGCTCTCGTCTCAACGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCT-AACGCC
* *
14758795 GATGCATGTCCCAGACATGTCTTACACTAGCT-TAAATATCTTAAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCT---CATC-TAACGCC
* * * * ***
14758843 AATGCATGTCCTAGACATATCTTACACTAGCTCTCATATTGTGTCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTAACG-CC
14758889 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
14758920 ACACGTATCA
Statistics
Matches: 102, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
45 3 0.03
46 61 0.60
48 36 0.35
49 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.29
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTAACGCC
Found at i:14758826 original size:94 final size:94
Alignment explanation
Indices: 14758705--14758919 Score: 211
Period size: 94 Copynumber: 2.3 Consensus size: 94
14758695 AAGCTAACGT
* * * * *** * **
14758705 CATGTCCCAGATAGGTTTTACAGTAGCTTGTCCATCGCGAGGCTGATGCATGTCCCA-A-ATAAG
1 CATGTCCCAGACATGTCTTACACTAGCTTAAACATCGCAAGGCCAATGCATGTCCCAGACAT-A-
* *
14758768 TCTTACACTAGCTCTCGTCTCAACG-CCGATG
64 TCTTACACTAGCTCTCATAT-AACGTCCGATG
* ** *
14758799 CATGTCCCAGACATGTCTTACACTAGCTTAAATATCTTAAGGCCAATGCATGTCCTAGACATATC
1 CATGTCCCAGACATGTCTTACACTAGCTTAAACATCGCAAGGCCAATGCATGTCCCAGACATATC
***
14758864 TTACACTAGCTCTCATATTGTGTCCGATG
66 TTACACTAGCTCTCATATAACGTCCGATG
14758893 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
14758920 ACACGTATCA
Statistics
Matches: 99, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
93 1 0.01
94 94 0.95
95 2 0.02
96 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (94 bp):
CATGTCCCAGACATGTCTTACACTAGCTTAAACATCGCAAGGCCAATGCATGTCCCAGACATATC
TTACACTAGCTCTCATATAACGTCCGATG
Found at i:14758859 original size:48 final size:46
Alignment explanation
Indices: 14758796--14758919 Score: 153
Period size: 48 Copynumber: 2.7 Consensus size: 46
14758786 CTCAACGCCG
14758796 ATGCATGTCCCAGACATGTCTTACACTAGCT-TAAATATCT-TAAGGCCA
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCT-AATAT-TGT--GGCCA
* * * * *
14758844 ATGCATGTCCTAGACATATCTTACACTAGCTCTCATATTGTGTCCG
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCTAATATTGTGGCCA
14758890 ATGCATGTCCCAGACATGTCTTACACTAGC
1 ATGCATGTCCCAGACATGTCTTACACTAGC
14758920 ACACGTATCA
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
46 31 0.46
47 1 0.01
48 34 0.51
49 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCTCTAATATTGTGGCCA
Found at i:14761306 original size:42 final size:44
Alignment explanation
Indices: 14761241--14761354 Score: 126
Period size: 45 Copynumber: 2.6 Consensus size: 44
14761231 ACCGACATTC
* * ** *
14761241 AGCCTGCTAGGTTTAAAAACCCGAAT-TCAT-TCACCGGCATT-T
1 AGCCTGCTAGGCTCAAAGGCCCGAATAT-ATCTCACCAGCATTAT
*
14761283 TGCCTGCTAGGCTCAAAGGCCCGAATAATATCTCACCAGCATTAT
1 AGCCTGCTAGGCTCAAAGGCCCGAAT-ATATCTCACCAGCATTAT
*
14761328 AACCTGCTAGGCTCAAAGGCCCGAATA
1 AGCCTGCTAGGCTCAAAGGCCCGAATA
14761355 GTACAGCACA
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
42 21 0.35
43 2 0.03
44 12 0.20
45 25 0.42
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (44 bp):
AGCCTGCTAGGCTCAAAGGCCCGAATATATCTCACCAGCATTAT
Found at i:14763547 original size:108 final size:108
Alignment explanation
Indices: 14763358--14763573 Score: 414
Period size: 108 Copynumber: 2.0 Consensus size: 108
14763348 TTTGTGCATT
*
14763358 TTACCCACAGTACAAGATACGCAAAATTTAACAGCAACCAAAATCAGGCGACATCCTTAATCTTT
1 TTACCCACAGTACAAGATACACAAAATTTAACAGCAACCAAAATCAGGCGACATCCTTAATCTTT
14763423 TTCTCTTCAAAAATCTTCCATAGCCGAATACTCATATCACTAC
66 TTCTCTTCAAAAATCTTCCATAGCCGAATACTCATATCACTAC
14763466 TTACCCACAGTACAAGATACACAAAATTTAACAGCAACCAAAATCAGGCGACATCCTTAATCTTT
1 TTACCCACAGTACAAGATACACAAAATTTAACAGCAACCAAAATCAGGCGACATCCTTAATCTTT
*
14763531 TTCTCTTCAAAAATCTTCCATAGCTGAATACTCATATCACTAC
66 TTCTCTTCAAAAATCTTCCATAGCCGAATACTCATATCACTAC
14763574 CAAAATCAAA
Statistics
Matches: 106, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
108 106 1.00
ACGTcount: A:0.38, C:0.27, G:0.08, T:0.27
Consensus pattern (108 bp):
TTACCCACAGTACAAGATACACAAAATTTAACAGCAACCAAAATCAGGCGACATCCTTAATCTTT
TTCTCTTCAAAAATCTTCCATAGCCGAATACTCATATCACTAC
Found at i:14767291 original size:157 final size:157
Alignment explanation
Indices: 14767005--14767320 Score: 623
Period size: 157 Copynumber: 2.0 Consensus size: 157
14766995 AATATATATA
14767005 TGCATGTACGTATGTGATGATGAAAGTGTTGAATGAAAAGAAAAGAGGTGAGATGTATTGAGTTG
1 TGCATGTACGTATGTGATGATGAAAGTGTTGAATGAAAAGAAAAGAGGTGAGATGTATTGAGTTG
14767070 TTGATCTCGGCACTAAATGTGCGAGTATAAACATTTATGACCATGAGATTGGCGCTACGTGTGCG
66 TTGATCTCGGCACTAAATGTGCGAGTATAAACATTTATGACCATGAGATTGGCGCTACGTGTGCG
*
14767135 GGTTTAAATTGTGCAGCACTAAGTGTG
131 GGGTTAAATTGTGCAGCACTAAGTGTG
14767162 TGCATGTACGTATGTGATGATGAAAGTGTTGAATGAAAAGAAAAGAGGTGAGATGTATTGAGTTG
1 TGCATGTACGTATGTGATGATGAAAGTGTTGAATGAAAAGAAAAGAGGTGAGATGTATTGAGTTG
14767227 TTGATCTCGGCACTAAATGTGCGAGTATAAACATTTATGACCATGAGATTGGCGCTACGTGTGCG
66 TTGATCTCGGCACTAAATGTGCGAGTATAAACATTTATGACCATGAGATTGGCGCTACGTGTGCG
14767292 GGGTTAAATTGTGCAGCACTAAGTGTG
131 GGGTTAAATTGTGCAGCACTAAGTGTG
14767319 TG
1 TG
14767321 AATTGACTAT
Statistics
Matches: 158, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
157 158 1.00
ACGTcount: A:0.30, C:0.11, G:0.30, T:0.30
Consensus pattern (157 bp):
TGCATGTACGTATGTGATGATGAAAGTGTTGAATGAAAAGAAAAGAGGTGAGATGTATTGAGTTG
TTGATCTCGGCACTAAATGTGCGAGTATAAACATTTATGACCATGAGATTGGCGCTACGTGTGCG
GGGTTAAATTGTGCAGCACTAAGTGTG
Found at i:14767363 original size:28 final size:27
Alignment explanation
Indices: 14767306--14767402 Score: 140
Period size: 27 Copynumber: 3.6 Consensus size: 27
14767296 TAAATTGTGC
* * *
14767306 AGCACTAAGTGTGTGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
14767333 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGATTATGT
*
14767361 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATGT
*
14767388 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
14767403 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 38 0.59
28 26 0.41
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.32
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATGT
Found at i:14767413 original size:27 final size:27
Alignment explanation
Indices: 14767306--14767415 Score: 105
Period size: 27 Copynumber: 4.0 Consensus size: 27
14767296 TAAATTGTGC
* * * *
14767306 AGCACTAAGTGTGTGAATTGACTATGT
1 AGCACTAAGTGTGCGACTTGAATATAT
* * *
14767333 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
14767361 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
14767388 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
14767415 A
1 A
14767416 TTCTTGAATC
Statistics
Matches: 73, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
27 44 0.60
28 29 0.40
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:14773444 original size:39 final size:39
Alignment explanation
Indices: 14773399--14773478 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
14773389 ACCCAATACA
14773399 AATTATACATGCAAACTTATTATAAACTTTATCTAAACC
1 AATTATACATGCAAACTTATTATAAACTTTATCTAAACC
14773438 AATTATACATGCAAACTTATTATAAACTTTATCTAAACC
1 AATTATACATGCAAACTTATTATAAACTTTATCTAAACC
14773477 AA
1 AA
14773479 CTTACTTATT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.45, C:0.17, G:0.03, T:0.35
Consensus pattern (39 bp):
AATTATACATGCAAACTTATTATAAACTTTATCTAAACC
Found at i:14777468 original size:21 final size:20
Alignment explanation
Indices: 14777440--14777478 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
14777430 CAAAACTTGT
*
14777440 ATAACTATTATCAAACATTC
1 ATAACTATCATCAAACATTC
14777460 ATAATCTATCATCAAACAT
1 ATAA-CTATCATCAAACAT
14777479 CAAAATAATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:14777878 original size:16 final size:17
Alignment explanation
Indices: 14777857--14777891 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
14777847 ACCTTCACTT
14777857 TAAAAACC-ATAGCTAA
1 TAAAAACCTATAGCTAA
*
14777873 TAAAAACCTTTAGCTAA
1 TAAAAACCTATAGCTAA
14777890 TA
1 TA
14777892 GAACTAAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.51, C:0.17, G:0.06, T:0.26
Consensus pattern (17 bp):
TAAAAACCTATAGCTAA
Found at i:14782317 original size:53 final size:47
Alignment explanation
Indices: 14782251--14782376 Score: 171
Period size: 47 Copynumber: 2.6 Consensus size: 47
14782241 GCGAATGTCT
*
14782251 GAACTCATTGAGTTGAGTCCGAGTTCGAGTTCGAGACATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTC--G-T-GA-A-ATGTAACTAGGCATCC
* *
14782304 GAGCTCGTTGAGTTGAGTCTGAGTTCGTGAAATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCC
14782351 GAACTCGTTGAGTTGAGTCCGAGTTC
1 GAACTCGTTGAGTTGAGTCCGAGTTC
14782377 ACTTATGGGC
Statistics
Matches: 68, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
47 40 0.59
48 1 0.01
49 2 0.03
50 1 0.01
51 1 0.01
53 23 0.34
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.29
Consensus pattern (47 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCC
Found at i:14784758 original size:41 final size:40
Alignment explanation
Indices: 14784713--14784830 Score: 123
Period size: 41 Copynumber: 2.9 Consensus size: 40
14784703 TTATAATCTT
*
14784713 ACACACTAAGTGCCTTTCATAGCCGAAGCTATCTCAACCTC
1 ACACACTAAGTGCCTTTCATAGCTGAAGCTATCTCAA-CTC
* * *
14784754 ACACACTAAGTGCCATACATAGCTGAAGGTAT-TCCAACTC
1 ACACACTAAGTGCCTTTCATAGCTGAAGCTATCT-CAACTC
** * *
14784794 GTACACTAACTGCCATAT-ATAGCTGAAGCTATCTCAA
1 ACACACTAAGTGCC-TTTCATAGCTGAAGCTATCTCAA
14784831 AATGCACACA
Statistics
Matches: 63, Mismatches: 11, Indels: 7
0.78 0.14 0.09
Matches are distributed among these distances:
40 31 0.49
41 32 0.51
ACGTcount: A:0.33, C:0.29, G:0.14, T:0.25
Consensus pattern (40 bp):
ACACACTAAGTGCCTTTCATAGCTGAAGCTATCTCAACTC
Found at i:14788166 original size:48 final size:48
Alignment explanation
Indices: 14788110--14788282 Score: 199
Period size: 48 Copynumber: 3.6 Consensus size: 48
14788100 CTAAGTGCTC
* * *
14788110 ATATCATGGCCCAAAGCCAACTCAATA-TATCTCGCACTT-GAAGTCCCG
1 ATATCATGGCCCGAAGCCAAATCAA-AGTAACTCGCA-TTCGAAGTCCCG
***
14788158 ATATCATGGCCCGAAGCCAAATCAAAGTAACTCGCATTCGAAGTGTTG
1 ATATCATGGCCCGAAGCCAAATCAAAGTAACTCGCATTCGAAGTCCCG
* * * **
14788206 ATATCATGGACCGAAGCCAAATCAAAGTAACTCAC-TCCCGAAGAGCCG
1 ATATCATGGCCCGAAGCCAAATCAAAGTAACTCGCAT-TCGAAGTCCCG
14788254 ATATCATGGCCCGAAGCCAAATCAAAGTA
1 ATATCATGGCCCGAAGCCAAATCAAAGTA
14788283 TTTCCTAATG
Statistics
Matches: 109, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
47 4 0.04
48 105 0.96
ACGTcount: A:0.35, C:0.27, G:0.18, T:0.20
Consensus pattern (48 bp):
ATATCATGGCCCGAAGCCAAATCAAAGTAACTCGCATTCGAAGTCCCG
Found at i:14788917 original size:17 final size:17
Alignment explanation
Indices: 14788891--14788926 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
14788881 ATTCAAGATC
*
14788891 TTTAATAGTTTTGTAAA
1 TTTAACAGTTTTGTAAA
14788908 TTTAACAGTTTTGTAAA
1 TTTAACAGTTTTGTAAA
14788925 TT
1 TT
14788927 AGTCCCTCGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.33, C:0.03, G:0.11, T:0.53
Consensus pattern (17 bp):
TTTAACAGTTTTGTAAA
Found at i:14790825 original size:21 final size:21
Alignment explanation
Indices: 14790799--14790864 Score: 114
Period size: 21 Copynumber: 3.1 Consensus size: 21
14790789 TAGGCCATGT
14790799 GCCACACACGGCATTAGACAC
1 GCCACACACGGCATTAGACAC
*
14790820 GCCACACACGGCATTAGACAT
1 GCCACACACGGCATTAGACAC
*
14790841 GCCACACACGGCATTAAACAC
1 GCCACACACGGCATTAGACAC
14790862 GCC
1 GCC
14790865 TATGTGTCTT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.33, C:0.38, G:0.18, T:0.11
Consensus pattern (21 bp):
GCCACACACGGCATTAGACAC
Found at i:14797909 original size:18 final size:19
Alignment explanation
Indices: 14797871--14797913 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
14797861 AACAATTAAT
14797871 AATTAATATATGCATATTA
1 AATTAATATATGCATATTA
* *
14797890 AATTATTATTTGCA-ATTA
1 AATTAATATATGCATATTA
14797908 AATTAA
1 AATTAA
14797914 AAATAAAAGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.44
Consensus pattern (19 bp):
AATTAATATATGCATATTA
Found at i:14800445 original size:19 final size:19
Alignment explanation
Indices: 14800421--14800458 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
14800411 TGGGCCTCGA
14800421 TGGGCCAAAATAGG-TCGTG
1 TGGGCC-AAATAGGCTCGTG
*
14800440 TGGGCCCAATAGGCTCGTG
1 TGGGCCAAATAGGCTCGTG
14800459 GACTCATACG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.21, C:0.21, G:0.37, T:0.21
Consensus pattern (19 bp):
TGGGCCAAATAGGCTCGTG
Found at i:14800746 original size:26 final size:27
Alignment explanation
Indices: 14800676--14800860 Score: 160
Period size: 27 Copynumber: 7.0 Consensus size: 27
14800666 TAAGACCTTG
* * *
14800676 ATTTGTAAAATTACCAAAATACCCTTG
1 ATTTGTAAAATTACCGAAATACCCCTA
* * *
14800703 AGTTATAAAATTACCGAAATACCTCT-
1 ATTTGTAAAATTACCGAAATACCCCTA
* * *
14800729 ATTTGTTAAATTATCGAAATACACCTA
1 ATTTGTAAAATTACCGAAATACCCCTA
** *
14800756 GGTTGTAAAATTACCAAAATACCCCTA
1 ATTTGTAAAATTACCGAAATACCCCTA
* ** *
14800783 ATTTGTGAAATTAATGAAATACCCCTG
1 ATTTGTAAAATTACCGAAATACCCCTA
* **
14800810 ATTTGTAAAATTA-CAAAATACCCCCG
1 ATTTGTAAAATTACCGAAATACCCCTA
* *
14800836 ATTTGT-AAATGACCGTAATACCCCT
1 ATTTGTAAAATTACCGAAATACCCCT
14800861 GTAGGGTAAA
Statistics
Matches: 124, Mismatches: 32, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
25 5 0.04
26 45 0.36
27 74 0.60
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.31
Consensus pattern (27 bp):
ATTTGTAAAATTACCGAAATACCCCTA
Found at i:14800765 original size:53 final size:53
Alignment explanation
Indices: 14800676--14800844 Score: 175
Period size: 53 Copynumber: 3.2 Consensus size: 53
14800666 TAAGACCTTG
* * * * *
14800676 ATTTGTAAAATTACCAAAATACCCTTGAGTTATAAAATTACCGAAATACCTCT-
1 ATTTGTAAAATTATCGAAATACCC-TGAGTTGTAAAATTACCAAAATACCCCTA
*
14800729 ATTTGTTAAATTATCGAAATACACCT-AGGTTGTAAAATTACCAAAATACCCCTA
1 ATTTGTAAAATTATCGAAATAC-CCTGA-GTTGTAAAATTACCAAAATACCCCTA
* * **
14800783 ATTTGTGAAATTAAT-GAAATACCCCTGATTTGTAAAATTA-CAAAATACCCCCG
1 ATTTGTAAAATT-ATCGAAATA-CCCTGAGTTGTAAAATTACCAAAATACCCCTA
14800836 ATTTGTAAA
1 ATTTGTAAA
14800845 TGACCGTAAT
Statistics
Matches: 99, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
52 1 0.01
53 61 0.62
54 33 0.33
55 4 0.04
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (53 bp):
ATTTGTAAAATTATCGAAATACCCTGAGTTGTAAAATTACCAAAATACCCCTA
Found at i:14800829 original size:80 final size:80
Alignment explanation
Indices: 14800678--14800830 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
14800668 AGACCTTGAT
* * * * *
14800678 TTGTAAAATTACCAAAATACCCTTGAGTTATAAAATTACCGAAATACCTCTATTTGTTAAATTAT
1 TTGTAAAATTACCAAAATACCCCTAAGTTATAAAATTAACGAAATACCCCTATTTGTAAAATTAT
*
14800743 CGAAATACACCTAGG
66 CAAAATACACCTAGG
* * * *
14800758 TTGTAAAATTACCAAAATACCCCTAATTTGTGAAATTAATGAAATACCCCTGATTTGTAAAATTA
1 TTGTAAAATTACCAAAATACCCCTAAGTTATAAAATTAACGAAATACCCCT-ATTTGTAAAATTA
14800823 -CAAAATAC
65 TCAAAATAC
14800831 CCCCGATTTG
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
80 50 0.81
81 12 0.19
ACGTcount: A:0.42, C:0.17, G:0.09, T:0.32
Consensus pattern (80 bp):
TTGTAAAATTACCAAAATACCCCTAAGTTATAAAATTAACGAAATACCCCTATTTGTAAAATTAT
CAAAATACACCTAGG
Found at i:14800956 original size:27 final size:27
Alignment explanation
Indices: 14800842--14800944 Score: 161
Period size: 27 Copynumber: 3.8 Consensus size: 27
14800832 CCCGATTTGT
14800842 AAATGACCGTAATACCCCTGTAGGGTA
1 AAATGACCGTAATACCCCTGTAGGGTA
* *
14800869 AAATGACCGTAATGCCTCTGTAGGGTA
1 AAATGACCGTAATACCCCTGTAGGGTA
* * *
14800896 AACTGACCATAATACCCCTATAGGGTA
1 AAATGACCGTAATACCCCTGTAGGGTA
14800923 AAATGACCGTAATACCCCTGTA
1 AAATGACCGTAATACCCCTGTA
14800945 TTGCAAAATG
Statistics
Matches: 66, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 66 1.00
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.23
Consensus pattern (27 bp):
AAATGACCGTAATACCCCTGTAGGGTA
Found at i:14801152 original size:27 final size:27
Alignment explanation
Indices: 14801090--14801173 Score: 77
Period size: 27 Copynumber: 3.2 Consensus size: 27
14801080 ATGGAAGAAG
* *
14801090 TACTG-TACTGGTGACTATGTCAC-AT
1 TACTGATACTGGTGGCTATGCCACAAT
14801115 TCACT-ATTACTGGTGGCTATGCCACAAT
1 T-ACTGA-TACTGGTGGCTATGCCACAAT
* * *
14801143 TACTGATACTGGTAGCT-TGCAACATT
1 TACTGATACTGGTGGCTATGCCACAAT
14801169 TACTG
1 TACTG
14801174 TTTCTGGCAG
Statistics
Matches: 49, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.02
26 15 0.31
27 29 0.59
28 4 0.08
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
TACTGATACTGGTGGCTATGCCACAAT
Found at i:14801180 original size:26 final size:27
Alignment explanation
Indices: 14801122--14801189 Score: 75
Period size: 26 Copynumber: 2.6 Consensus size: 27
14801112 CATTCACTAT
* *
14801122 TACTGGTGGCTATGCCACAATTACTGA
1 TACTGGTAGCTATGCAACAATTACTGA
* *
14801149 TACTGGTAGCT-TGCAACATTTACTGT
1 TACTGGTAGCTATGCAACAATTACTGA
* *
14801175 TTCTGGCAGCTATGC
1 TACTGGTAGCTATGC
14801190 TGTATTATTA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
26 21 0.62
27 13 0.38
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.34
Consensus pattern (27 bp):
TACTGGTAGCTATGCAACAATTACTGA
Found at i:14801432 original size:33 final size:33
Alignment explanation
Indices: 14801358--14801449 Score: 123
Period size: 33 Copynumber: 2.8 Consensus size: 33
14801348 TTAGGCCCAC
*
14801358 ACTGTTACTGTATAGGGCTAAAG-CCAGACTAT
1 ACTGTTACTGTATAGGGCTAAGGCCCAGACTAT
* *
14801390 TCTGTTACTGTATAGGGCTAAGGCCCAGACTGT
1 ACTGTTACTGTATAGGGCTAAGGCCCAGACTAT
* * *
14801423 ACTGATACTGGATAGGGCTCAGGCCCA
1 ACTGTTACTGTATAGGGCTAAGGCCCA
14801450 CACAATTACT
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
32 21 0.40
33 31 0.60
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (33 bp):
ACTGTTACTGTATAGGGCTAAGGCCCAGACTAT
Found at i:14806224 original size:27 final size:26
Alignment explanation
Indices: 14806184--14806364 Score: 146
Period size: 27 Copynumber: 6.7 Consensus size: 26
14806174 GATCGTTAAG
* *
14806184 ACCCCGATTTGTAAAATTACCGAAAT
1 ACCCCGAGTTGTAAAATTACCAAAAT
* * *
14806210 ACTCCCGGGTTGTAAAATTATCAAGAT
1 AC-CCCGAGTTGTAAAATTACCAAAAT
* *
14806237 ACCCATGATTTGTAAAATTACCAAAAT
1 ACCC-CGAGTTGTAAAATTACCAAAAT
* * **
14806264 ACCATCGATTTGTAAAATTACTGAAAT
1 ACC-CCGAGTTGTAAAATTACCAAAAT
*
14806291 ACCCCCAGGTTGTAAAATTACCAAAAT
1 ACCCCGA-GTTGTAAAATTACCAAAAT
* * * *
14806318 ACCCCTAATTTGTGAAATTACTAAAAT
1 ACCCC-GAGTTGTAAAATTACCAAAAT
* *
14806345 ACCCCAAATTTGTAAAATTA
1 ACCCC-GAGTTGTAAAATTA
14806365 TTGAAATACC
Statistics
Matches: 125, Mismatches: 25, Indels: 9
0.79 0.16 0.06
Matches are distributed among these distances:
26 6 0.05
27 118 0.94
28 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.29
Consensus pattern (26 bp):
ACCCCGAGTTGTAAAATTACCAAAAT
Found at i:14806277 original size:54 final size:53
Alignment explanation
Indices: 14806184--14806364 Score: 181
Period size: 54 Copynumber: 3.4 Consensus size: 53
14806174 GATCGTTAAG
* *
14806184 ACCCC-GATTTGTAAAATTACCGAAATACTCCCGGGTTGTAAAATTA-TCAAGAT
1 ACCCCAGATTTGTAAAATTACCAAAATAC-CCCGAGTTGTAAAATTACTCAA-AT
* * *
14806237 A-CCCATGATTTGTAAAATTACCAAAATACCATCGATTTGTAAAATTACTGAAAT
1 ACCCCA-GATTTGTAAAATTACCAAAATACC-CCGAGTTGTAAAATTACTCAAAT
* * * * *
14806291 ACCCCCAG-GTTGTAAAATTACCAAAATACCCCTAATTTGTGAAATTACTAAAAT
1 A-CCCCAGATTTGTAAAATTACCAAAATACCCC-GAGTTGTAAAATTACTCAAAT
*
14806345 ACCCCAAATTTGTAAAATTA
1 ACCCCAGATTTGTAAAATTA
14806365 TTGAAATACC
Statistics
Matches: 108, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
52 3 0.03
53 8 0.07
54 89 0.82
55 4 0.04
56 4 0.04
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.29
Consensus pattern (53 bp):
ACCCCAGATTTGTAAAATTACCAAAATACCCCGAGTTGTAAAATTACTCAAAT
Found at i:14806329 original size:81 final size:80
Alignment explanation
Indices: 14806184--14806376 Score: 260
Period size: 81 Copynumber: 2.4 Consensus size: 80
14806174 GATCGTTAAG
* * * * * *
14806184 ACCCCGATTTGTAAAATTACCGAAATACTCCCGGGTTGTAAAATTATCAAGATACCCATGATTTG
1 ACCCCGATTTGTAAAATTACTGAAATACCCCCAGGTTGTAAAATTACCAAAATACCCATAATTTG
14806249 TAAAATTACCAAAAT
66 TAAAATTACCAAAAT
* *
14806264 ACCATCGATTTGTAAAATTACTGAAATACCCCCAGGTTGTAAAATTACCAAAATACCCCTAATTT
1 ACC-CCGATTTGTAAAATTACTGAAATACCCCCAGGTTGTAAAATTACCAAAATACCCATAATTT
* *
14806329 GTGAAATTACTAAAAT
65 GTAAAATTACCAAAAT
* *
14806345 ACCCCAAATTTGTAAAATTATTGAAATACCCC
1 ACCCC-GATTTGTAAAATTACTGAAATACCCC
14806377 TTGATTTGTA
Statistics
Matches: 98, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
80 4 0.04
81 94 0.96
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (80 bp):
ACCCCGATTTGTAAAATTACTGAAATACCCCCAGGTTGTAAAATTACCAAAATACCCATAATTTG
TAAAATTACCAAAAT
Done.