Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 44 of 313
Found at i:14806371 original size:27 final size:27
Alignment explanation
Indices: 14806219--14806390 Score: 159
Period size: 27 Copynumber: 6.3 Consensus size: 27
14806209 TACTCCCGGG
* * *
14806219 TTGTAAAATTA-TCAAGATACCCATGAT
1 TTGTAAAATTACT-AAAATACCCCTAAT
* * *
14806246 TTGTAAAATTACCAAAATA-CCATCGAT
1 TTGTAAAATTACTAAAATACCCCT-AAT
* * **
14806273 TTGTAAAATTACTGAAATACCCCCAGG
1 TTGTAAAATTACTAAAATACCCCTAAT
*
14806300 TTGTAAAATTACCAAAATACCCCTAAT
1 TTGTAAAATTACTAAAATACCCCTAAT
* *
14806327 TTGTGAAATTACTAAAATACCCCAAAT
1 TTGTAAAATTACTAAAATACCCCTAAT
* * *
14806354 TTGTAAAATTATTGAAATACCCCTTGAT
1 TTGTAAAATTACTAAAATACCCC-TAAT
14806382 TTGTAAAAT
1 TTGTAAAAT
14806391 GACCGTAATA
Statistics
Matches: 119, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
26 4 0.03
27 102 0.86
28 13 0.11
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.32
Consensus pattern (27 bp):
TTGTAAAATTACTAAAATACCCCTAAT
Found at i:14806400 original size:28 final size:27
Alignment explanation
Indices: 14806384--14806471 Score: 149
Period size: 27 Copynumber: 3.3 Consensus size: 27
14806374 CCCTTGATTT
14806384 GTAAAATGACCGTAATACCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
* *
14806411 GTAAAATAACCGTAATATCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
*
14806438 GTAAAATGACCGTAATACCCCTGTATG
1 GTAAAATGACCGTAATACCCCTGTAGG
14806465 GTAAAAT
1 GTAAAAT
14806472 AACGATTATG
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.25
Consensus pattern (27 bp):
GTAAAATGACCGTAATACCCCTGTAGG
Found at i:14806952 original size:33 final size:33
Alignment explanation
Indices: 14806881--14806972 Score: 114
Period size: 33 Copynumber: 2.8 Consensus size: 33
14806871 GCCCACATCG
* * *
14806881 TTACTATATAGGGCTAAAGCCCAGACTGTTCTA
1 TTACTGTATAGGGCTAAGGCCCAGACTGTACTA
*
14806914 TTACTGTATATGGCTAAGGCCCAGACTGTACTGA
1 TTACTGTATAGGGCTAAGGCCCAGACTGTACT-A
* *
14806948 -TACTGGATAGGGCTCAGGCCCAGAC
1 TTACTGTATAGGGCTAAGGCCCAGAC
14806973 AGTTACTGCA
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
33 50 0.98
34 1 0.02
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (33 bp):
TTACTGTATAGGGCTAAGGCCCAGACTGTACTA
Found at i:14813945 original size:79 final size:80
Alignment explanation
Indices: 14813814--14813961 Score: 219
Period size: 79 Copynumber: 1.9 Consensus size: 80
14813804 TATTCGGATG
*** * *
14813814 ATAACCGGGCTAAGTCTTGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAG-CCCGAAGGCA
1 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGGCA
14813878 TTTGTGCGAGTTACT
66 TTTGTGCGAGTTACT
*
14813893 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAGTCCCGAAGGC
14813957 ATTTG
65 ATTTG
14813962 AGCAAGTAGC
Statistics
Matches: 61, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
78 2 0.03
79 45 0.74
80 14 0.23
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:14813983 original size:79 final size:79
Alignment explanation
Indices: 14813814--14813984 Score: 213
Period size: 79 Copynumber: 2.2 Consensus size: 79
14813804 TATTCGGATG
*** * *
14813814 ATAACCGGGCTAAGTCTTGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
* *
14813879 TTGTGCGAGTTACT
66 TTGAGCAAGTTACT
*
14813893 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGC
14813957 ATTTGAGCAAG-TAGCT
64 ATTTGAGCAAGTTA-CT
*
14813973 ATATCC-GGCTAA
1 ATAACCGGGCTAA
14813985 ATTCCGAAGG
Statistics
Matches: 80, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
78 2 0.03
79 53 0.66
80 25 0.31
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
TTGAGCAAGTTACT
Found at i:14813994 original size:39 final size:40
Alignment explanation
Indices: 14813814--14813961 Score: 219
Period size: 40 Copynumber: 3.7 Consensus size: 40
14813804 TATTCGGATG
** * *
14813814 ATAACCGGGCTAAGTCTTGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
14813854 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
14813893 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
14813933 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
14813962 AGCAAGTAGC
Statistics
Matches: 97, Mismatches: 8, Indels: 6
0.87 0.07 0.05
Matches are distributed among these distances:
39 33 0.34
40 64 0.66
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:14816806 original size:40 final size:40
Alignment explanation
Indices: 14816761--14816964 Score: 252
Period size: 40 Copynumber: 5.1 Consensus size: 40
14816751 CGGGATTTAA
* * * *
14816761 CCGGATATAGCT-ACTCGCTCGAATGTCTTCGGAACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGAACTTAGC
*
14816801 CCGGATATAGTAACTCGCACCAATGCCTTC-GAGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGA-ACTTAGC
*
14816841 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGAACTTAGC
* *
14816881 CCAGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGAACTTAGC
* * * *
14816921 CCGGA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGAACTTAGC
14816961 CCGG
1 CCGG
14816965 TTATCATCCA
Statistics
Matches: 149, Mismatches: 11, Indels: 8
0.89 0.07 0.05
Matches are distributed among these distances:
39 4 0.03
40 144 0.97
41 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGAACTTAGC
Found at i:14821113 original size:105 final size:106
Alignment explanation
Indices: 14820930--14821139 Score: 323
Period size: 105 Copynumber: 2.0 Consensus size: 106
14820920 TGAGCCCAAA
* * *
14820930 TGGCATCACTAAGGACTCGTAGTGACCATATCTCGTCCAGAAGGCAGTTTTAGGTATGTCCGAAT
1 TGGCATCACTAAGAACTCGTAGTGACCATATCTCATCCAGAAAGCAGTTTTAGGTATGTCCGAAT
*
14820995 CTCCAATTCGCAACTGATAATAGCCCGATCTCAAATCTATT
66 CTCCAATTCGCAACTGATAATAACCCGATCTCAAATCTATT
* * * * *
14821036 TGGCATCACTAAGAACTCGTAGTG-GCGTATCTCATTCTGAAAGCAGTTTTGGGTATGTCCGAAT
1 TGGCATCACTAAGAACTCGTAGTGACCATATCTCATCCAGAAAGCAGTTTTAGGTATGTCCGAAT
*
14821100 CTCGAATTCGCAACTGATAATAACCCGATCTCAAATCTAT
66 CTCCAATTCGCAACTGATAATAACCCGATCTCAAATCTAT
14821140 CTTTGAAAAC
Statistics
Matches: 94, Mismatches: 10, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
105 71 0.76
106 23 0.24
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (106 bp):
TGGCATCACTAAGAACTCGTAGTGACCATATCTCATCCAGAAAGCAGTTTTAGGTATGTCCGAAT
CTCCAATTCGCAACTGATAATAACCCGATCTCAAATCTATT
Found at i:14824665 original size:40 final size:40
Alignment explanation
Indices: 14824603--14824817 Score: 292
Period size: 40 Copynumber: 5.4 Consensus size: 40
14824593 AACCCAAGTA
* * * *
14824603 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
** *
14824642 CCTTCGGGACAGAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
14824682 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
14824722 CCTTCGGGACTTAGCCCGGATATAGTAACTCGAACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
14824762 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
14824802 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
14824818 TGGTTATCAT
Statistics
Matches: 159, Mismatches: 14, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 12 0.08
40 147 0.92
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:14830244 original size:56 final size:56
Alignment explanation
Indices: 14830177--14830288 Score: 206
Period size: 56 Copynumber: 2.0 Consensus size: 56
14830167 TCACCATGAT
14830177 TTATCAATATCAAACATTTTCTCAACCAAACATGGCCATATCATAAAATTATTTAC
1 TTATCAATATCAAACATTTTCTCAACCAAACATGGCCATATCATAAAATTATTTAC
* *
14830233 TTATCAGTATCAAACATTTTTTCAACCAAACATGGCCATATCATAAAATTATTTAC
1 TTATCAATATCAAACATTTTCTCAACCAAACATGGCCATATCATAAAATTATTTAC
14830289 ACAAAATAGT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.40, C:0.21, G:0.04, T:0.35
Consensus pattern (56 bp):
TTATCAATATCAAACATTTTCTCAACCAAACATGGCCATATCATAAAATTATTTAC
Found at i:14830904 original size:93 final size:93
Alignment explanation
Indices: 14830797--14830967 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
14830787 GCCCATAAGT
* *
14830797 GAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
14830862 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * *
14830890 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
14830955 CGAGTTCGGATGC
66 CGAGTTCGGATGC
14830968 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:14830964 original size:46 final size:46
Alignment explanation
Indices: 14830789--14830964 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
14830779 TGTAACCCGC
* * * * *
14830789 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* *
14830835 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* * *
14830885 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
14830928 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
14830965 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
44 1 0.01
45 2 0.02
46 63 0.58
47 29 0.27
48 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:14832471 original size:24 final size:24
Alignment explanation
Indices: 14832433--14832586 Score: 245
Period size: 24 Copynumber: 6.4 Consensus size: 24
14832423 CTAGAGGCCT
*
14832433 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
* *
14832458 AGCCATTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* *
14832482 AACCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
14832506 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
14832530 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
14832554 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
14832578 AGCCCTTTT
1 AGCCCTTTT
14832587 TCACTTCCTC
Statistics
Matches: 120, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
24 116 0.97
25 4 0.03
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:14832661 original size:20 final size:20
Alignment explanation
Indices: 14832636--14832702 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
14832626 TTATGAATAC
*
14832636 ATCATGTGCATACCATACAT
1 ATCATGTGCATATCATACAT
14832656 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
14832676 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
14832696 ACCATGT
1 ATCATGT
14832703 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:14839457 original size:27 final size:27
Alignment explanation
Indices: 14839427--14839511 Score: 109
Period size: 27 Copynumber: 3.2 Consensus size: 27
14839417 TCCCCAGTTT
*
14839427 GTAAAATGACCGTAATACCCTTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
* *
14839454 GTAAAATAACCGTAATGCCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
* * *
14839481 AT-AAATGATCGTAATACCCCTGTATG
1 GTAAAATGACCGTAATACCCCTGTAGG
14839507 GTAAA
1 GTAAA
14839512 TTTACGATGA
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
26 21 0.44
27 27 0.56
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
GTAAAATGACCGTAATACCCCTGTAGG
Found at i:14839493 original size:26 final size:25
Alignment explanation
Indices: 14839430--14839512 Score: 94
Period size: 26 Copynumber: 3.2 Consensus size: 25
14839420 CCAGTTTGTA
*
14839430 AAATGACCGTAATACCCTTGTAGGGT
1 AAATGACCGTAATACCCCTGTA-GGT
* *
14839456 AAAATAACCGTAATGCCCCTGTAGGAT
1 -AAATGACCGTAATACCCCTGTAGG-T
*
14839483 AAATGATCGTAATACCCCTGTATGGT
1 AAATGACCGTAATACCCCTGTA-GGT
14839509 AAAT
1 AAAT
14839513 TTACGATGAT
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
26 26 0.54
27 22 0.46
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (25 bp):
AAATGACCGTAATACCCCTGTAGGT
Found at i:14841157 original size:40 final size:40
Alignment explanation
Indices: 14841112--14841347 Score: 185
Period size: 40 Copynumber: 5.9 Consensus size: 40
14841102 CGAATACACG
* * * *
14841112 TCACCAGCATGATTACTCTTCGGGACCTAGCCCGGATATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * ** *
14841152 ACACCAGCACGAATGCTCTTTGGGGTTTAGCACGGATATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * * *
14841192 TCACTAGCACGAATGCTCTTTGGAACTTAGCCCGGATACA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * * *
14841232 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGAATTTA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * * *
14841272 GTAACTC-GCACCAATGC-CTTC-GGATCTTAGTCCGGATATGG
1 -TCAC-CAGCACGAATGCTCTTCGGGA-CTTAGCCCGGATAT-A
* *
14841313 TCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGA
1 TCAC-CAGCACGAATGCTCTTCGGGACTTAGCCCGGA
14841348 CATCATTCGA
Statistics
Matches: 156, Mismatches: 34, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
39 3 0.02
40 135 0.87
41 18 0.12
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
Found at i:14841719 original size:29 final size:29
Alignment explanation
Indices: 14841653--14841730 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
14841643 CTTAATAATC
*
14841653 AACCACGCACACTTAGTG-CATGTACTTTA
1 AACC-CGCACACTTAGTGCCATGCACTTTA
*
14841682 AACTCGCACACTTAGTGCCATGCA-TTTCA
1 AACCCGCACACTTAGTGCCATGCACTTT-A
*
14841711 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
14841731 ATCTCACAAC
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
28 16 0.37
29 27 0.63
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCACTTTA
Found at i:14841770 original size:43 final size:43
Alignment explanation
Indices: 14841712--14841814 Score: 179
Period size: 43 Copynumber: 2.4 Consensus size: 43
14841702 TGCATTTCAA
14841712 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
* *
14841755 TCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTCTT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
14841798 GCCCGCGCACTTAGTGC
1 GCCCGCACACTTAGTGC
14841815 TGAAAACCAA
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 56 1.00
ACGTcount: A:0.24, C:0.37, G:0.16, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:14843718 original size:37 final size:37
Alignment explanation
Indices: 14843668--14843746 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
14843658 TTATTACGAA
* * *
14843668 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
14843705 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
14843742 GTCTT
1 GTCTT
14843747 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:14843975 original size:47 final size:47
Alignment explanation
Indices: 14843864--14844321 Score: 880
Period size: 47 Copynumber: 9.7 Consensus size: 47
14843854 GCCCTTCGGG
*
14843864 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
14843914 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
14843961 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
14844008 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
14844055 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
14844102 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
14844149 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
14844196 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
14844243 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
14844290 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
14844322 ATACTATCAT
Statistics
Matches: 407, Mismatches: 1, Indels: 3
0.99 0.00 0.01
Matches are distributed among these distances:
47 369 0.91
49 34 0.08
50 4 0.01
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:14846831 original size:26 final size:27
Alignment explanation
Indices: 14846741--14846840 Score: 98
Period size: 27 Copynumber: 3.8 Consensus size: 27
14846731 ATGGAGGAAG
* * *
14846741 TACTGTAC-TGGTGACTATGTCACATT
1 TACTGTTCTTGGTGGCTATGCCACATT
* *
14846767 CACTGTTGC-TGGTGGCTATGCCACAAT
1 TACTGTT-CTTGGTGGCTATGCCACATT
* *
14846794 TACTGATATTGGTGGCT-TGCCACATT
1 TACTGTTCTTGGTGGCTATGCCACATT
*
14846820 TACTGTTCTTGGTAGCTATGC
1 TACTGTTCTTGGTGGCTATGC
14846841 TGCATTATTA
Statistics
Matches: 59, Mismatches: 12, Indels: 5
0.78 0.16 0.07
Matches are distributed among these distances:
26 27 0.46
27 32 0.54
ACGTcount: A:0.19, C:0.21, G:0.23, T:0.37
Consensus pattern (27 bp):
TACTGTTCTTGGTGGCTATGCCACATT
Found at i:14848280 original size:27 final size:27
Alignment explanation
Indices: 14848250--14848427 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
14848240 ATATTGAGTC
* *
14848250 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
14848277 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
14848304 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
14848332 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* * **
14848359 CGTACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
14848386 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
14848413 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
14848428 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:14860895 original size:31 final size:31
Alignment explanation
Indices: 14860815--14860897 Score: 141
Period size: 31 Copynumber: 2.7 Consensus size: 31
14860805 CAGTCTCGAT
*
14860815 ATAT-ACTGGGCCGAAGCCATTTCATAAATC
1 ATATCACTGGGCCGAAGCCTTTTCATAAATC
14860845 ATATCACTGGGCCGAAGCCTTTTCATAAATC
1 ATATCACTGGGCCGAAGCCTTTTCATAAATC
*
14860876 ATATCATTGGGCCGAAGCCTTT
1 ATATCACTGGGCCGAAGCCTTT
14860898 ACTGTAAACG
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
30 4 0.08
31 46 0.92
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (31 bp):
ATATCACTGGGCCGAAGCCTTTTCATAAATC
Found at i:14861192 original size:26 final size:26
Alignment explanation
Indices: 14861115--14861312 Score: 280
Period size: 26 Copynumber: 7.8 Consensus size: 26
14861105 CCTCTTTAAT
**
14861115 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
14861140 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
** **
14861165 AACTGGGGCATAAGTTCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
14861191 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
14861217 AACT--GG-ATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
**
14861240 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
14861266 AACTGGGGCATAAGCCTTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
14861292 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
14861313 GCACTTCCTC
Statistics
Matches: 153, Mismatches: 16, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
23 21 0.14
24 2 0.01
25 35 0.23
26 95 0.62
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:14861243 original size:75 final size:77
Alignment explanation
Indices: 14861115--14861312 Score: 305
Period size: 75 Copynumber: 2.6 Consensus size: 77
14861105 CCTCTTTAAT
**
14861115 AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCTTTTCAATAAACTGGGGCATAA
1 AACTGGGGCATAAGCCCTTTTCAATAAACT-GGGCATAAGCCCTTTTCAATAAACTGGGGCATAA
**
14861178 GTTCTTTTCGGTA
65 GCCCTTTTCGGTA
14861191 AACTGGGGCATAAGCCCTTTTCAATAAACT-GG-ATAAGCCCTTTTCAATAAACTGGGGCATAAG
1 AACTGGGGCATAAGCCCTTTTCAATAAACTGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAG
14861254 CCCTTTTCGGTA
66 CCCTTTTCGGTA
*
14861266 AACTGGGGCATAAGCCTTTTTCAATAAACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTTCAATAAACT-GGGCATAAGCCCTTTT
14861313 GCACTTCCTC
Statistics
Matches: 112, Mismatches: 5, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
74 1 0.01
75 70 0.62
76 10 0.09
77 19 0.17
78 12 0.11
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (77 bp):
AACTGGGGCATAAGCCCTTTTCAATAAACTGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAG
CCCTTTTCGGTA
Found at i:14861387 original size:20 final size:20
Alignment explanation
Indices: 14861362--14861448 Score: 131
Period size: 20 Copynumber: 4.3 Consensus size: 20
14861352 TTATGAATAC
*
14861362 ATCATGTACATTTCATACAT
1 ATCATGTGCATTTCATACAT
14861382 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
*
14861402 ATCATGTGCATTTTATACAT
1 ATCATGTGCATTTCATACAT
*
14861422 ATCATGTGCATATCATATCA-
1 ATCATGTGCATTTCATA-CAT
14861442 ATCATGT
1 ATCATGT
14861449 ATATCATATC
Statistics
Matches: 62, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
20 60 0.97
21 2 0.03
ACGTcount: A:0.32, C:0.18, G:0.09, T:0.40
Consensus pattern (20 bp):
ATCATGTGCATTTCATACAT
Found at i:14861512 original size:25 final size:25
Alignment explanation
Indices: 14861484--14861531 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
14861474 ATAATTAAAC
* * *
14861484 CCTAAGGGTATAATGGTCATTTTTA
1 CCTAAGGGCAAAATAGTCATTTTTA
14861509 CCTAAGGGCAAAATAGTCATTTT
1 CCTAAGGGCAAAATAGTCATTTT
14861532 CATACTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (25 bp):
CCTAAGGGCAAAATAGTCATTTTTA
Found at i:14862303 original size:27 final size:27
Alignment explanation
Indices: 14862250--14862609 Score: 256
Period size: 27 Copynumber: 13.3 Consensus size: 27
14862240 TTTCATCCTA
** * * *
14862250 CAAGGGTGCTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* ** *
14862277 CAAGGGTGTTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * *
14862304 CAATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTATAAA-C
* * *
14862333 CAAGGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
14862360 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
** * *
14862387 TGAGGGTATTTCGGTAATTTCATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
14862414 CAATGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
14862441 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
** ** *
14862468 TGAGGGTATTTCAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * *
14862495 CAGGGGTATTTTAGCAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTATAAAC
* ** *
14862521 CTAGGGTATTTTGGTAATTTTATTGAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
14862548 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
14862575 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
14862602 CGAGGGTA
1 CAAGGGTA
14862610 AAACAGTAAT
Statistics
Matches: 265, Mismatches: 63, Indels: 10
0.78 0.19 0.03
Matches are distributed among these distances:
26 19 0.07
27 218 0.82
28 15 0.06
29 13 0.05
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:14862422 original size:54 final size:54
Alignment explanation
Indices: 14862290--14862609 Score: 288
Period size: 54 Copynumber: 5.9 Consensus size: 54
14862280 GGGTGTTTCA
* * * * * *
14862290 GTAATTTTGTAAACCAATGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTTT
1 GTAATTTTATAAACCAAGGGTATTT-TGGTAA-TTTTACAAA-TCGAGGGTATTTTG
* * * * *
14862346 GTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCG
1 GTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTG
* * *
14862400 GTAATTTCATAAACCAATGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTG
1 GTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAATCGA-GGGTATTTTG
* ** ** * *
14862454 GTAATTTTACAAACTGAGGGTATTTCAGTAATTTTACAAA-CCAGGGGTATTTTA
1 GTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAATCGA-GGGTATTTTG
* * * ***
14862508 GCAATTTTACAAA-CTAGGGTATTTTGGTAATTTTATTGATCGAGGGTATTTTG
1 GTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTG
* * **
14862561 GTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 GTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAATCGAGGGTA
14862610 AAACAGTAAT
Statistics
Matches: 216, Mismatches: 44, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
53 39 0.18
54 143 0.66
55 9 0.04
56 25 0.12
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (54 bp):
GTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTG
Found at i:14862447 original size:81 final size:81
Alignment explanation
Indices: 14862333--14862595 Score: 350
Period size: 81 Copynumber: 3.3 Consensus size: 81
14862323 TTTAGAAAGT
* **
14862333 CAAGGGTATTTTTGTAATTTTGTAAA-TCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATT
1 CAAGGGTATTTTAGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATT
*
14862397 TCGGTAATTTCATAAAC
65 TCGGTAATTTTATAAAC
* * *
14862414 CAATGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTGAGGGTATTT
1 CAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTT
* *
14862479 CAGTAATTTTACAAAC
66 CGGTAATTTTATAAAC
* * *** *
14862495 CAGGGGTATTTTAGCAATTTTACAAACTA-GGGTATTTTGGTAATTTTATTGATCGAGGGTATTT
1 CAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTT
* *
14862559 TGGTAATTTTGTAAAC
66 CGGTAATTTTATAAAC
14862575 CAAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTAGTAATTTT
14862596 GTAAATCGAG
Statistics
Matches: 158, Mismatches: 23, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
80 61 0.39
81 96 0.61
82 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.42
Consensus pattern (81 bp):
CAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTT
CGGTAATTTTATAAAC
Found at i:14862617 original size:27 final size:27
Alignment explanation
Indices: 14862587--14862717 Score: 190
Period size: 27 Copynumber: 4.9 Consensus size: 27
14862577 AGGGTATTTT
*
14862587 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
14862614 AGTAATTCTGTAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
14862641 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
14862668 GGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
14862695 TGTAATTCTATAAATCGAGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
14862718 CTTTAGTAAT
Statistics
Matches: 92, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 92 1.00
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.30
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:14862662 original size:81 final size:81
Alignment explanation
Indices: 14862577--14862762 Score: 219
Period size: 81 Copynumber: 2.3 Consensus size: 81
14862567 TTGTAAACCA
* *
14862577 AGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATA
1 AGGGTATTTCAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATA
*
14862642 GTAATTCTATAAATCG
66 GTAATTCTACAAATCG
*** * * * ***
14862658 AGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACTGTAATTCTATAAATCGAGGGTACTTTA
1 AGGGTATTTCAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATA
* * *
14862723 GTAATTTTACAATTTG
66 GTAATTCTACAAATCG
* *
14862739 AGGGCATTTCAGTAATTTGGTAAA
1 AGGGTATTTCAGTAATTTTGTAAA
14862763 CTAAAGTATT
Statistics
Matches: 84, Mismatches: 21, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
81 84 1.00
ACGTcount: A:0.37, C:0.08, G:0.21, T:0.34
Consensus pattern (81 bp):
AGGGTATTTCAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATA
GTAATTCTACAAATCG
Found at i:14862726 original size:27 final size:27
Alignment explanation
Indices: 14862546--14862730 Score: 156
Period size: 27 Copynumber: 6.9 Consensus size: 27
14862536 AATTTTATTG
** *
14862546 ATCGAGGGTATTTTGGTAATTTTGTAA
1 ATCGAGGGTAAATTAGTAATTTTGTAA
* * **
14862573 ACCAAGGGTATTTTAGTAATTTTGTAA
1 ATCGAGGGTAAATTAGTAATTTTGTAA
** *
14862600 ATCGAGGGTAAAACAGTAATTCTGTAA
1 ATCGAGGGTAAATTAGTAATTTTGTAA
* * * *
14862627 ATCAAGGGTAAAATAGTAATTCTATAA
1 ATCGAGGGTAAATTAGTAATTTTGTAA
***
14862654 ATCGAGGGTAAAACGGTAATTTTGTAA
1 ATCGAGGGTAAATTAGTAATTTTGTAA
* * *
14862681 ATCGAGGGTAAAACT-GTAATTCTATAA
1 ATCGAGGGT-AAATTAGTAATTTTGTAA
**
14862708 ATCGAGGGTACTTTAGTAATTTT
1 ATCGAGGGTAAATTAGTAATTTT
14862731 ACAATTTGAG
Statistics
Matches: 130, Mismatches: 26, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
26 2 0.02
27 125 0.96
28 3 0.02
ACGTcount: A:0.36, C:0.08, G:0.21, T:0.35
Consensus pattern (27 bp):
ATCGAGGGTAAATTAGTAATTTTGTAA
Found at i:14862730 original size:54 final size:54
Alignment explanation
Indices: 14862561--14862717 Score: 217
Period size: 54 Copynumber: 2.9 Consensus size: 54
14862551 GGGTATTTTG
* *** * *
14862561 GTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
* *
14862615 GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
*
14862669 GTAATTTTGTAAATCGAGGGTAAAACT-GTAATTCTATAAATCGAGGGTA
1 GTAATTTTGTAAATCAAGGGTAAAA-TAGTAATTCTATAAATCGAGGGTA
14862718 CTTTAGTAAT
Statistics
Matches: 92, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
54 91 0.99
55 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.21, T:0.32
Consensus pattern (54 bp):
GTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
Found at i:14862849 original size:27 final size:27
Alignment explanation
Indices: 14862815--14862874 Score: 120
Period size: 27 Copynumber: 2.2 Consensus size: 27
14862805 AGCCTATTCT
14862815 TGGCCCAAATGGGCCCACACGCTCGTG
1 TGGCCCAAATGGGCCCACACGCTCGTG
14862842 TGGCCCAAATGGGCCCACACGCTCGTG
1 TGGCCCAAATGGGCCCACACGCTCGTG
14862869 TGGCCC
1 TGGCCC
14862875 TTTTAGCCCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.17, C:0.38, G:0.30, T:0.15
Consensus pattern (27 bp):
TGGCCCAAATGGGCCCACACGCTCGTG
Found at i:14870942 original size:46 final size:46
Alignment explanation
Indices: 14870892--14871017 Score: 218
Period size: 46 Copynumber: 2.7 Consensus size: 46
14870882 TGGTTGAGCA
*
14870892 TCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
14870938 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
14870984 -CCCAAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTA
14871018 GGGGCGGGTT
Statistics
Matches: 77, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
45 4 0.05
46 73 0.95
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:14871279 original size:19 final size:20
Alignment explanation
Indices: 14871242--14871279 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
14871232 ATAAGGTGGT
14871242 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
14871262 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
14871280 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:14872806 original size:30 final size:29
Alignment explanation
Indices: 14872752--14872815 Score: 92
Period size: 30 Copynumber: 2.2 Consensus size: 29
14872742 CAAGTAGCCG
*
14872752 AAGCTAGTTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTAAAACGCACACTTAGTGCCA
* *
14872781 AAGCTAGTTTAAAACGCATAGTTAGTGCCA
1 AAGCTAG-TTAAAACGCACACTTAGTGCCA
14872811 AAGCT
1 AAGCT
14872816 TCTGATTCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
29 7 0.23
30 24 0.77
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (29 bp):
AAGCTAGTTAAAACGCACACTTAGTGCCA
Found at i:14878284 original size:53 final size:52
Alignment explanation
Indices: 14878102--14878354 Score: 210
Period size: 55 Copynumber: 4.8 Consensus size: 52
14878092 TTAGGGTTAG
* * *
14878102 GGATACCATGTAAGACCATCCCAAGGCATGACAATTGGTAAGGTTTC-TAAGGGAA
1 GGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-G-TTCATAA-GGAA
* * *
14878157 GGATATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGAA
1 GGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGGAA
** * * *
14878211 AAAGTCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAA
1 GGA-TACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGG-AA
* * * *
14878265 GGATACCATGTAAGTCCATGTCGAGACATGGCAATGGTAAGTT--TCAA--AA
1 GGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCAT-AAGGAA
* * * * *
14878314 GGAGACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 GGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
14878355 GTACCCATGT
Statistics
Matches: 163, Mismatches: 29, Indels: 18
0.78 0.14 0.09
Matches are distributed among these distances:
49 37 0.23
51 1 0.01
52 4 0.02
53 41 0.25
54 16 0.10
55 64 0.39
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (52 bp):
GGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGAA
Found at i:14878306 original size:108 final size:110
Alignment explanation
Indices: 14878107--14878307 Score: 291
Period size: 108 Copynumber: 1.8 Consensus size: 110
14878097 GTTAGGGATA
* *
14878107 CCATGTAAGACCATCCCAAGGCATGACAATTGGTAAGGTTTCTAAGGGAAGGATATCATGTAAGA
1 CCATGTAAGACCATCCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
*
14878172 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGAAAAAGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGAAAAAGTC
* * *
14878217 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATCCCAAGGCATGACAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
* * *
14878279 TCCATGTCGAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
14878308 TCAAAAGGAG
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.57
109 7 0.09
110 25 0.31
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATCCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGAAAAAGTC
Found at i:14878568 original size:16 final size:16
Alignment explanation
Indices: 14878547--14878577 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14878537 ATAAATTTGA
14878547 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
14878563 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
14878578 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:14882853 original size:45 final size:45
Alignment explanation
Indices: 14882735--14882873 Score: 203
Period size: 44 Copynumber: 3.1 Consensus size: 45
14882725 ACGGTACTAA
*
14882735 TCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAAATGATAT
1 TCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGATAT
* * *
14882780 T-GGACCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAT-ACTGT
1 TCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGA-TAT
*
14882824 TCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATA-
1 TCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGATAT
14882868 TCGGGC
1 TCGGGC
14882874 TGTAAAATGC
Statistics
Matches: 83, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
43 1 0.01
44 44 0.53
45 37 0.45
46 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (45 bp):
TCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGATAT
Found at i:14883140 original size:10 final size:10
Alignment explanation
Indices: 14883125--14883155 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
14883115 TCGGTCAAGG
14883125 TGTGAAAGTA
1 TGTGAAAGTA
14883135 TGTGAAAGTA
1 TGTGAAAGTA
14883145 TGTGAAAGTA
1 TGTGAAAGTA
14883155 T
1 T
14883156 TTGATTTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.39, C:0.00, G:0.29, T:0.32
Consensus pattern (10 bp):
TGTGAAAGTA
Found at i:14885388 original size:54 final size:54
Alignment explanation
Indices: 14885329--14885487 Score: 192
Period size: 54 Copynumber: 2.9 Consensus size: 54
14885319 ATTATTAAAG
* *
14885329 TACCCTCGATTTACAGAGTTACCGTTTTACCCTTGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTTGATTTACAGAATTACCATTT
* * **
14885383 TACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTTGATTTACAGAATTACCATTT
* * * *** * *
14885437 TACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTACAAAATTACCA
1 TACCCTCGATTTACAGAATTACCATTTTACCCTTGATTTACAGAATTACCA
14885488 AAATACCATC
Statistics
Matches: 91, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 91 1.00
ACGTcount: A:0.31, C:0.21, G:0.09, T:0.39
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTTGATTTACAGAATTACCATTT
Found at i:14885459 original size:27 final size:27
Alignment explanation
Indices: 14885329--14885460 Score: 174
Period size: 27 Copynumber: 4.9 Consensus size: 27
14885319 ATTATTAAAG
* **
14885329 TACCCTCGATTTACAGAGTTACCGTTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
14885356 TACCCTTGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTATTT
*
14885383 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
14885410 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
14885437 TACCCTCGATTTATAAAATTACTA
1 TACCCTCGATTTACAGAATTACTA
14885461 AAATACCCTT
Statistics
Matches: 92, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 92 1.00
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTATTT
Found at i:14885467 original size:27 final size:27
Alignment explanation
Indices: 14885383--14885733 Score: 136
Period size: 27 Copynumber: 13.2 Consensus size: 27
14885373 ATTACCATTT
* ***
14885383 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACTAAAA
* * * ****
14885410 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACTAAAA
14885437 TACCCTCGATTTATAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* * * *
14885464 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
*
14885491 TACCATCGA-TTAGTAAAA-TAC-----
1 TACCCTCGATTTA-TAAAATTACTAAAA
* * *
14885512 --CCCT-GGTTTGTAAAATTACTGAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* * *
14885536 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* * *
14885563 TATCCCTAG-TTTGTAAAATTACCAAAAA
1 TA-CCCTCGATTTATAAAATTA-CTAAAA
* * * **
14885591 TACCACT-GGTTTGTGAAATTACCGAAA
1 TACC-CTCGATTTATAAAATTACTAAAA
* * *
14885618 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* * *
14885645 TACCC-CTGATTTACAAAGTTACAAAAA
1 TACCCTC-GATTTATAAAATTACTAAAA
* * *
14885672 TACCCTTGACTTTCTAAAAATTA-TGGAAA
1 TACCCTCGA-TTTAT-AAAATTACT-AAAA
* * * * *
14885701 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTATAAAATTACTAAAA
14885728 TACCCT
1 TACCCT
14885734 TGGTTTGTAG
Statistics
Matches: 251, Mismatches: 51, Indels: 44
0.73 0.15 0.13
Matches are distributed among these distances:
18 6 0.02
19 8 0.03
26 13 0.05
27 177 0.71
28 31 0.12
29 16 0.06
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACTAAAA
Found at i:14885484 original size:81 final size:81
Alignment explanation
Indices: 14885329--14885485 Score: 188
Period size: 81 Copynumber: 1.9 Consensus size: 81
14885319 ATTATTAAAG
* * * ***
14885329 TACCCTCGATTTACAGAGTTACCGTTTTACCCTTGATTTACAGAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATT
* *
14885394 TATAGAATTACTATTT
66 TACAAAATTACTATTT
* * * * * *
14885410 TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTATAAAATTACTAAAATACCCTTGGTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATT
14885475 TACAAAATTAC
66 TACAAAATTAC
14885486 CAAAATACCA
Statistics
Matches: 62, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
81 62 1.00
ACGTcount: A:0.31, C:0.21, G:0.09, T:0.39
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATT
TACAAAATTACTATTT
Found at i:14885510 original size:45 final size:45
Alignment explanation
Indices: 14885453--14885554 Score: 123
Period size: 45 Copynumber: 2.3 Consensus size: 45
14885443 CGATTTATAA
* *
14885453 AATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCATC
1 AATTAGTAAAATACCCCTGGTTTACAAAATTACCAAAATACCATC
* ** ** *
14885498 GATTAGTAAAATACCCCTGGTTTGTAAAATTACTGAAATACCCTC
1 AATTAGTAAAATACCCCTGGTTTACAAAATTACCAAAATACCATC
*
14885543 AATTTGTAAAAT
1 AATTAGTAAAAT
14885555 TACCAAAATA
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (45 bp):
AATTAGTAAAATACCCCTGGTTTACAAAATTACCAAAATACCATC
Found at i:14885613 original size:55 final size:53
Alignment explanation
Indices: 14885505--14885649 Score: 166
Period size: 55 Copynumber: 2.7 Consensus size: 53
14885495 ATCGATTAGT
* **
14885505 AAAATACCCCTGGTTTGTAAAATTACTGAAATACCCTCAATTTGTAAAATTACC
1 AAAATA-CCCTAGTTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACC
** *
14885559 AAAATATCCCTAGTTTGTAAAATTACCAAAAATACCACT-GGTTTGTGAAATTACC
1 AAAATA-CCCTAGTTTGTAAAATTACC-AAAATACC-CTCAATTTGTAAAATTACC
* *
14885614 GAAATACCCTCAATTTGTAAAATTACCAAAATACCC
1 AAAATACCCT-AGTTTGTAAAATTACCAAAATACCC
14885650 CTGATTTACA
Statistics
Matches: 79, Mismatches: 9, Indels: 7
0.83 0.09 0.07
Matches are distributed among these distances:
53 1 0.01
54 36 0.46
55 40 0.51
56 2 0.03
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.30
Consensus pattern (53 bp):
AAAATACCCTAGTTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACC
Found at i:14885642 original size:82 final size:81
Alignment explanation
Indices: 14885505--14885675 Score: 256
Period size: 82 Copynumber: 2.1 Consensus size: 81
14885495 ATCGATTAGT
* * *
14885505 AAAATACCCCTGGTTTGTAAAATTACTGAAATACCCTCAATTTGTAAAATTACCAAAATATCCCT
1 AAAATACCACTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT
*
14885570 AGTTTGTA-AAA-TTACCA
66 -GATT-TACAAAGTTA-CA
*
14885587 AAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT
1 AAAATACCACTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT
14885652 GATTTACAAAGTTACA
66 GATTTACAAAGTTACA
14885668 AAAATACC
1 AAAATACC
14885676 CTTGACTTTC
Statistics
Matches: 82, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
80 2 0.02
81 16 0.20
82 64 0.78
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (81 bp):
AAAATACCACTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT
GATTTACAAAGTTACA
Found at i:14885853 original size:27 final size:27
Alignment explanation
Indices: 14885793--14885858 Score: 105
Period size: 27 Copynumber: 2.4 Consensus size: 27
14885783 ACCCCTATTA
* *
14885793 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAGAGACCGTAAAGCCCCCGTAG
14885820 GGTAAAGAGACCGTAAAGCCCCCGTAG
1 GGTAAAGAGACCGTAAAGCCCCCGTAG
*
14885847 GGTAAAGTGACC
1 GGTAAAGAGACC
14885859 ATAATACCCC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.35, C:0.23, G:0.29, T:0.14
Consensus pattern (27 bp):
GGTAAAGAGACCGTAAAGCCCCCGTAG
Found at i:14886763 original size:52 final size:51
Alignment explanation
Indices: 14886685--14886807 Score: 212
Period size: 52 Copynumber: 2.4 Consensus size: 51
14886675 AGGAAGTGCA
*
14886685 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTACGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-CGCCCCAGTTTACCG
*
14886737 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTCGCCCCAGTTTACCG
14886788 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
14886808 ATTAAAGAGG
Statistics
Matches: 69, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
50 10 0.14
51 23 0.33
52 36 0.52
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTCGCCCCAGTTTACCG
Found at i:14886782 original size:25 final size:26
Alignment explanation
Indices: 14886685--14886807 Score: 178
Period size: 26 Copynumber: 4.8 Consensus size: 26
14886675 AGGAAGTGCA
**
14886685 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* *
14886711 AAAAGGGCTTACGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
14886737 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
14886763 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
14886788 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
14886808 ATTAAAGAGG
Statistics
Matches: 87, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
25 33 0.38
26 54 0.62
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:14887017 original size:42 final size:42
Alignment explanation
Indices: 14886952--14887043 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
14886942 TAGTCTCCCC
* ** * *
14886952 AAATAGGCTTGCATACATTCATTGGTATTTCATTTGATATTG
1 AAATAGGCTTGCATACATCCATTGACATTACATGTGATATTG
*
14886994 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATAGGCTTGCATACATCCATTGACATTACATGTGATATTG
14887036 AAATAGGC
1 AAATAGGC
14887044 CTAAGGGCCA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36
Consensus pattern (42 bp):
AAATAGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:14893573 original size:44 final size:44
Alignment explanation
Indices: 14893505--14893672 Score: 214
Period size: 44 Copynumber: 3.8 Consensus size: 44
14893495 TACGGTACTA
* * *
14893505 ATCGAGCCTTTGAGCTTAGCAGGCTATAATGCCGGTGAAATGAT
1 ATCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
* * **
14893549 ATCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATTCT
1 ATCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
*
14893593 ATTCGGGCCTTCGAGCCTAGCAAGCTATAATGCCGGTGAAATGAT
1 A-TCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
** *
14893638 ATTTGG-CTTCGAGCCTAGCAGGCGA-AATGCCGGTG
1 ATCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTG
14893673 GATGAATTTG
Statistics
Matches: 109, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
42 10 0.09
43 17 0.16
44 43 0.39
45 39 0.36
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (44 bp):
ATCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
Found at i:14893614 original size:45 final size:45
Alignment explanation
Indices: 14893510--14893672 Score: 217
Period size: 45 Copynumber: 3.7 Consensus size: 45
14893500 TACTAATCGA
* *
14893510 GCCTTTGAGCTTAGCAGGCTATAATGCCGGTGAAATGATA-TCGG
1 GCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATTCGG
* * **
14893554 GCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATTCTATTCGG
1 GCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATTCGG
* *
14893599 GCCTTCGAGCCTAGCAAGCTATAATGCCGGTGAAATGATATT-TG
1 GCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATTCGG
*
14893643 G-CTTCGAGCCTAGCAGGCGA-AATGCCGGTG
1 GCCTTCGAGCCTAGCAGGCTATAATGCCGGTG
14893673 GATGAATTTG
Statistics
Matches: 106, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
42 10 0.09
43 17 0.16
44 38 0.36
45 41 0.39
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.26
Consensus pattern (45 bp):
GCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATTCGG
Found at i:14895876 original size:15 final size:16
Alignment explanation
Indices: 14895844--14895876 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
14895834 GGCCCAGTCC
14895844 GTTACTGTATGCATTG
1 GTTACTGTATGCATTG
*
14895860 GTTACTGTTTG-ATTG
1 GTTACTGTATGCATTG
14895875 GT
1 GT
14895877 AGGGGATTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.15, C:0.09, G:0.27, T:0.48
Consensus pattern (16 bp):
GTTACTGTATGCATTG
Found at i:14897769 original size:27 final size:27
Alignment explanation
Indices: 14897739--14897935 Score: 245
Period size: 27 Copynumber: 7.3 Consensus size: 27
14897729 TACTGAAATG
** *
14897739 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* * * *
14897766 CCCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTACAAAATTACCATTTTA
*
14897793 CCCTCGATTTACAAAATTGCCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* * *
14897820 CCCTCAATTTATAGAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
14897847 CCCT-GATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
14897873 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* *
14897900 CCCTC-AGTTTAAAAAATTACCGTTTTA
1 CCCTCGA-TTTACAAAATTACCATTTTA
*
14897927 CCCTTGATT
1 CCCTCGATT
14897936 GTGAAATTAC
Statistics
Matches: 149, Mismatches: 18, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
26 24 0.16
27 124 0.83
28 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTACCATTTTA
Found at i:14897888 original size:80 final size:80
Alignment explanation
Indices: 14897739--14897935 Score: 277
Period size: 80 Copynumber: 2.4 Consensus size: 80
14897729 TACTGAAATG
* * * * *
14897739 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
1 CCCTCAATTTATAGAATTACCATTTTACCCT-GATTTACAAAATTACCATTTCACCCTCGATTTA
*
14897804 CAAAATTGCCATTTTA
65 CAAAATTACCATTTTA
*
14897820 CCCTCAATTTATAGAATTACCATTTTACCCTGATTTACAAAATTACCATTTTACCCTCGATTTAC
1 CCCTCAATTTATAGAATTACCATTTTACCCTGATTTACAAAATTACCATTTCACCCTCGATTTAC
14897885 AAAATTACCATTTTA
66 AAAATTACCATTTTA
* * * *
14897900 CCCTCAGTTTAAAAAATTACCGTTTTACCCTTGATT
1 CCCTCAATTTATAGAATTACCATTTTACCC-TGATT
14897936 GTGAAATTAC
Statistics
Matches: 104, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
80 70 0.67
81 34 0.33
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.39
Consensus pattern (80 bp):
CCCTCAATTTATAGAATTACCATTTTACCCTGATTTACAAAATTACCATTTCACCCTCGATTTAC
AAAATTACCATTTTA
Found at i:14898019 original size:27 final size:27
Alignment explanation
Indices: 14897967--14898088 Score: 149
Period size: 27 Copynumber: 4.6 Consensus size: 27
14897957 TGTAGGATAG
*
14897967 AATTACCAAAAT-CACCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
14897993 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* ** * *
14898020 AATGACCAAAATACCAATGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
14898047 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
14898074 AATTACCAAAATACC
1 AATTACCAAAATACC
14898089 TCTGATTTAC
Statistics
Matches: 79, Mismatches: 14, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
26 14 0.18
27 64 0.81
28 1 0.01
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:14898059 original size:54 final size:52
Alignment explanation
Indices: 14897934--14898089 Score: 172
Period size: 54 Copynumber: 2.9 Consensus size: 52
14897924 TTACCCTTGA
* ** *
14897934 TTGTGAAATTACTGAAATACCCCT-GTAGGATAGAATTACCAAAATCACCTAGT
1 TTGTGAAATTACCGAAATACCCCTAGTTTG-TAAAATTACCAAAAT-ACCTAGT
* * * *
14897987 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATGACCAAAATACCAATGGT
1 TTGTGAAATTACCGAAATACCCCTAGTTTGTAAAATTACCAAAATACC--TAGT
*
14898041 TTGTGAAATTACCGAAATA-CCCTCAATTTGTAAAATTACCAAAATACCT
1 TTGTGAAATTACCGAAATACCCCT-AGTTTGTAAAATTACCAAAATACCT
14898090 CTGATTTACA
Statistics
Matches: 87, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
52 4 0.05
53 38 0.44
54 45 0.52
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.29
Consensus pattern (52 bp):
TTGTGAAATTACCGAAATACCCCTAGTTTGTAAAATTACCAAAATACCTAGT
Found at i:14898096 original size:27 final size:27
Alignment explanation
Indices: 14897967--14898105 Score: 124
Period size: 27 Copynumber: 5.2 Consensus size: 27
14897957 TGTAGGATAG
*
14897967 AATTACCAAAATCACCT-AG-TTTGTAA
1 AATTACCAAAAT-ACCTCTGATTTGTAA
*
14897993 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCTCTGA-TTTGTAA
* ** * *
14898020 AATGACCAAAATACCAATGGTTTGTGA
1 AATTACCAAAATACCTCTGATTTGTAA
* *
14898047 AATTACCGAAATACC-CTCAATTTGTAA
1 AATTACCAAAATACCTCT-GATTTGTAA
**
14898074 AATTACCAAAATACCTCTGATTTACAA
1 AATTACCAAAATACCTCTGATTTGTAA
14898101 AATTA
1 AATTA
14898106 TAGAAATACC
Statistics
Matches: 90, Mismatches: 17, Indels: 11
0.76 0.14 0.09
Matches are distributed among these distances:
25 3 0.03
26 13 0.14
27 72 0.80
28 2 0.02
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCTCTGATTTGTAA
Found at i:14898104 original size:54 final size:53
Alignment explanation
Indices: 14897967--14898173 Score: 159
Period size: 54 Copynumber: 3.8 Consensus size: 53
14897957 TGTAGGATAG
* ** * *
14897967 AATTACCAAAATCACC-TAGTTTGTAAAATTACCAAAATACCC-CTAGTTTGTAA
1 AATTACCAAAAT-ACCTTGGTTTACAAAATTACCGAAATACCCTC-AATTTGTAA
* * ***
14898020 AATGACCAAAATACCAATGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACC-TTGGTTTACAAAATTACCGAAATACCCTCAATTTGTAA
* ** * * *
14898074 AATTACCAAAATACCTCTGATTTACAAAATTATAGAAATACCCTTGACTTTCTAAA
1 AATTACCAAAATACCT-TGGTTTACAAAATTACCGAAATACCC-TCAATTTGT-AA
* *
14898130 AATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATACCCT
1 AATTACCA-AAATACC-TTGGTTTACAAAATTACCGAAATACCCT
14898174 TGGTTTGTAG
Statistics
Matches: 126, Mismatches: 20, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
52 3 0.02
53 11 0.09
54 65 0.52
55 9 0.07
56 37 0.29
57 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (53 bp):
AATTACCAAAATACCTTGGTTTACAAAATTACCGAAATACCCTCAATTTGTAA
Found at i:14898112 original size:27 final size:27
Alignment explanation
Indices: 14898082--14898171 Score: 89
Period size: 27 Copynumber: 3.3 Consensus size: 27
14898072 AAAATTACCA
14898082 AAATACCTCTGATTTACAAAATTATAG
1 AAATACCTCTGATTTACAAAATTATAG
14898109 AAATACC-CTTGACTTT-CTAAAAATTATAG
1 AAATACCTC-TGA-TTTAC--AAAATTATAG
*
14898138 AAATACCAT-TGGTTTACAAAATTACT-G
1 AAATACC-TCTGATTTACAAAATTA-TAG
14898165 AAATACC
1 AAATACC
14898172 CTTGGTTTGT
Statistics
Matches: 54, Mismatches: 1, Indels: 16
0.76 0.01 0.23
Matches are distributed among these distances:
26 1 0.02
27 26 0.48
28 7 0.13
29 20 0.37
ACGTcount: A:0.43, C:0.17, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATACCTCTGATTTACAAAATTATAG
Found at i:14898176 original size:27 final size:27
Alignment explanation
Indices: 14898094--14898179 Score: 104
Period size: 27 Copynumber: 3.1 Consensus size: 27
14898084 ATACCTCTGA
*
14898094 TTTACAAAATTATAGAAATACCCTTGAC
1 TTTACAAAATTATAGAAATACCCTTG-G
*
14898122 TTT-CTAAAAATTATAGAAATACCATTGG
1 TTTAC--AAAATTATAGAAATACCCTTGG
14898150 TTTACAAAATTACT-GAAATACCCTTGG
1 TTTACAAAATTA-TAGAAATACCCTTGG
14898177 TTT
1 TTT
14898180 GTAGATTTAC
Statistics
Matches: 51, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
27 23 0.45
28 7 0.14
29 21 0.41
ACGTcount: A:0.40, C:0.15, G:0.09, T:0.36
Consensus pattern (27 bp):
TTTACAAAATTATAGAAATACCCTTGG
Found at i:14898324 original size:27 final size:27
Alignment explanation
Indices: 14898233--14898324 Score: 116
Period size: 27 Copynumber: 3.4 Consensus size: 27
14898223 ACCCCTATTA
* *
14898233 GGTAAAAAGACCGTAAAGCTCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
14898260 GGTAAAGA-GACCGTAAAGCCCCTGTAG
1 GGTAAA-ATGACCGTAAAGCCCCTGTAG
* *
14898287 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
14898314 GGTAAAATGAC
1 GGTAAAATGAC
14898325 GAATATGCCC
Statistics
Matches: 58, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
27 56 0.97
28 2 0.03
ACGTcount: A:0.35, C:0.20, G:0.26, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:14899155 original size:26 final size:26
Alignment explanation
Indices: 14899123--14899233 Score: 168
Period size: 26 Copynumber: 4.3 Consensus size: 26
14899113 TAGGAAGTGC
**
14899123 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
14899149 AACAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
14899175 AAAAGGGCTTATGACCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
14899201 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
14899227 AAAAGGG
1 AAAAGGG
14899234 AATAATTGAA
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:14899208 original size:52 final size:52
Alignment explanation
Indices: 14899123--14899338 Score: 269
Period size: 52 Copynumber: 4.4 Consensus size: 52
14899113 TAGGAAGTGC
*
14899123 AAAAGGGCTTATGCCCCAGTTTATTGAACAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
* ** **
14899175 AAAAGGGCTTATGACCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
* *
14899227 AAAAGGG---A------A--TAATTGAAAAGGGCTTATGCCCCCGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
14899268 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
14899319 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
14899339 ATTAAAGAGG
Statistics
Matches: 139, Mismatches: 14, Indels: 24
0.79 0.08 0.14
Matches are distributed among these distances:
41 33 0.24
43 1 0.01
44 1 0.01
49 1 0.01
50 11 0.08
51 24 0.17
52 68 0.49
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.26
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
Found at i:14899282 original size:67 final size:67
Alignment explanation
Indices: 14899174--14899300 Score: 236
Period size: 67 Copynumber: 1.9 Consensus size: 67
14899164 CCAGTTTACC
14899174 GAAAAGGGCTTATGACCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGAATAA
1 GAAAAGGGCTTATGACCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGAATAA
14899239 TT
66 TT
* *
14899241 GAAAAGGGCTTATGCCCCCGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTGAAAAGGG
1 GAAAAGGGCTTATGACCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTGAAAAGGG
14899301 CTTTGCCCCA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 58 1.00
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.24
Consensus pattern (67 bp):
GAAAAGGGCTTATGACCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGAATAA
TT
Found at i:14899307 original size:25 final size:26
Alignment explanation
Indices: 14899241--14899338 Score: 155
Period size: 26 Copynumber: 3.8 Consensus size: 26
14899231 GGGAATAATT
*
14899241 GAAAAGGGCTTATGCCCCCGTTTACC
1 GAAAAGGGCTTATGCCCCAGTTTACC
**
14899267 GAAAAGGGCTTATGCCCCAGTTTATT
1 GAAAAGGGCTTATGCCCCAGTTTACC
14899293 GAAAAGGGCTT-TGCCCCAGTTTACC
1 GAAAAGGGCTTATGCCCCAGTTTACC
14899318 GAAAAGGGCTT-TGCCCCAGTT
1 GAAAAGGGCTTATGCCCCAGTT
14899339 ATTAAAGAGG
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
25 33 0.49
26 34 0.51
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (26 bp):
GAAAAGGGCTTATGCCCCAGTTTACC
Found at i:14899318 original size:51 final size:51
Alignment explanation
Indices: 14899238--14899338 Score: 177
Period size: 51 Copynumber: 2.0 Consensus size: 51
14899228 AAAGGGAATA
*
14899238 ATTGAAAAGGGCTTATGCCCCCGTTTACCGAAAAGGGCTTATGCCCCAGTTT
1 ATTGAAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTT-TGCCCCAGTTT
14899290 ATTGAAAAGGGCTT-TGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTT
1 ATTGAAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTT
14899339 ATTAAAGAGG
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
50 10 0.21
51 24 0.50
52 14 0.29
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.27
Consensus pattern (51 bp):
ATTGAAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTT
Found at i:14899607 original size:31 final size:31
Alignment explanation
Indices: 14899556--14899634 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
14899546 CGTTTACAGT
* *
14899556 AAAGGCTTCGACCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
14899587 AAAGGATTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
14899618 AAAGGCTTCAGCCCAGT
1 AAAGGCTTCGGCCCAGT
14899635 AACCGTTAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:14904756 original size:30 final size:30
Alignment explanation
Indices: 14904722--14904779 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
14904712 CCGAGCCTAG
14904722 GGGCAAAAGTCTAAATATGCAAAAGTTTAA
1 GGGCAAAAGTCTAAATATGCAAAAGTTTAA
* * * *
14904752 GGGCAAAATTGTAATTTTGCAAAAGTTT
1 GGGCAAAAGTCTAAATATGCAAAAGTTT
14904780 GAGTTAAGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.29
Consensus pattern (30 bp):
GGGCAAAAGTCTAAATATGCAAAAGTTTAA
Found at i:14910685 original size:108 final size:110
Alignment explanation
Indices: 14910533--14910733 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
14910523 ATCCTTTTTA
* * *
14910533 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACTAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
14910596 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
14910641 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
*
14910706 TTCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
14910734 TATCCTTAAA
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.59
109 6 0.07
110 27 0.33
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:14910688 original size:55 final size:53
Alignment explanation
Indices: 14910486--14910740 Score: 220
Period size: 55 Copynumber: 4.8 Consensus size: 53
14910476 ACGCGGGTAC
* * * * *
14910486 CTTACCATTTCCATGACTTGTCATGGTCTTACGTGGTATCCTT---TT-TA-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACAT-GTATCCTTGCCTTATAGAA
* *
14910535 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACAT-GTATCCTTGCCTTATAGAA
* * * *
14910588 CTCACTAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACAT-GTATCC-TTGCCTTATAG-AA
* * * *
14910643 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGA-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATG-TATCCTTGCCTTATAGAA
* *
14910696 CCTTACCAATTTCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACAT-GTATCCTT
14910741 AAACCCTAAT
Statistics
Matches: 170, Mismatches: 23, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
49 39 0.23
52 4 0.02
53 46 0.27
54 9 0.05
55 69 0.41
56 3 0.02
ACGTcount: A:0.21, C:0.25, G:0.16, T:0.38
Consensus pattern (53 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGTATCCTTGCCTTATAGAA
Found at i:14917687 original size:23 final size:24
Alignment explanation
Indices: 14917647--14917691 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
14917637 TTTGCTCTTC
* *
14917647 TAGCATGAACTTGTCTTACCTTTT
1 TAGCATGAACTCGCCTTACCTTTT
14917671 TAGCAT-AACTCGCCTTACCTT
1 TAGCATGAACTCGCCTTACCTT
14917692 ACCTTACCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.22, C:0.27, G:0.11, T:0.40
Consensus pattern (24 bp):
TAGCATGAACTCGCCTTACCTTTT
Found at i:14917889 original size:53 final size:54
Alignment explanation
Indices: 14917760--14918014 Score: 256
Period size: 55 Copynumber: 4.8 Consensus size: 54
14917750 ACACGGGTAC
* * * * *
14917760 CTTACCATTTCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* *
14917809 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * *
14917862 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * * * * *
14917917 CTTATCAATGCCATGTCTTGACTTGGTCTTACATGATTTCCTTGCCTTA-AAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
*
14917970 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
14918015 AAACCCTAAT
Statistics
Matches: 170, Mismatches: 25, Indels: 16
0.81 0.12 0.08
Matches are distributed among these distances:
49 37 0.22
50 1 0.01
52 2 0.01
53 48 0.28
54 10 0.06
55 70 0.41
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.37
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:14917959 original size:108 final size:110
Alignment explanation
Indices: 14917807--14918007 Score: 316
Period size: 108 Copynumber: 1.8 Consensus size: 110
14917797 ATCCTTTTGA
* * **
14917807 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAA-CTCACCAA-
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAAAAACCTCACCAAT
14917870 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
66 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * * *
14917915 AACTTATCAATGCCATGTCTTGACTTGGTCTTACATGATTTCCTTGCCTTAAAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAAAAACCTCACCAAT
14917980 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
14918008 TATCCTTAAA
Statistics
Matches: 83, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
108 48 0.58
109 7 0.08
110 28 0.34
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAAAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:14919304 original size:11 final size:11
Alignment explanation
Indices: 14919288--14919315 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
14919278 GCTGAAGCCC
14919288 ATATCACAATA
1 ATATCACAATA
14919299 ATATCACAATA
1 ATATCACAATA
14919310 ATATCA
1 ATATCA
14919316 TACATGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.54, C:0.18, G:0.00, T:0.29
Consensus pattern (11 bp):
ATATCACAATA
Found at i:14919819 original size:27 final size:27
Alignment explanation
Indices: 14919789--14919863 Score: 96
Period size: 27 Copynumber: 2.8 Consensus size: 27
14919779 TACCTTATAG
* **
14919789 GGGTATGTGAGTCGTTTTACACTACAA
1 GGGTATGTCAGTAATTTTACACTACAA
*
14919816 GGGTATTTCAGTAATTTTACACTACAA
1 GGGTATGTCAGTAATTTTACACTACAA
* *
14919843 GGGTATTTCAATAATTTTACA
1 GGGTATGTCAGTAATTTTACA
14919864 AATCAGAGGT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.37
Consensus pattern (27 bp):
GGGTATGTCAGTAATTTTACACTACAA
Found at i:14919878 original size:27 final size:27
Alignment explanation
Indices: 14919815--14920183 Score: 399
Period size: 27 Copynumber: 13.7 Consensus size: 27
14919805 TTACACTACA
* *
14919815 AGGGTATTTCAGTAATTTTAC-ACTACA
1 AGGGTATTTCAGTAATTTTACAAAT-CG
*
14919842 AGGGTATTTCAATAATTTTACAAATC-
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
14919868 AGAGGTGTTTCGGTAATTTTACAAATCG
1 AG-GGTATTTCAGTAATTTTACAAATCG
* *
14919896 AGGGTATTTCGGTAATTTTACAAATTG
1 AGGGTATTTCAGTAATTTTACAAATCG
*
14919923 AGGGTATTTC-GATAATTTTACAAATTG
1 AGGGTATTTCAG-TAATTTTACAAATCG
14919950 AGGGTATTTCAGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * * *
14919977 AGAGTGTTTCAGTAATTTTAAAAATTG
1 AGGGTATTTCAGTAATTTTACAAATCG
* ** *
14920004 AGGGTGTTTTGGTAATTTTACAAATCA
1 AGGGTATTTCAGTAATTTTACAAATCG
* * * *
14920031 AGGGTGTTTCAATAATTTCATAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* **
14920058 GGGGTATTTTGGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
*
14920085 AGGGTATTTTAGT-ATTTT-CACAATCG
1 AGGGTATTTCAGTAATTTTACA-AATCG
*
14920111 AGGGTATTTCAGTAATTTTATAAATC-
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
14920137 AGGGGTATTTCGGTAATTTTACAAATCA
1 A-GGGTATTTCAGTAATTTTACAAATCG
*
14920165 AGGGTATTTTAGTAATTTT
1 AGGGTATTTCAGTAATTTT
14920184 TCTTTATTAT
Statistics
Matches: 293, Mismatches: 39, Indels: 20
0.83 0.11 0.06
Matches are distributed among these distances:
25 2 0.01
26 26 0.09
27 258 0.88
28 7 0.02
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAATCG
Found at i:14923706 original size:16 final size:16
Alignment explanation
Indices: 14923685--14923715 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14923675 AAAATGATAT
*
14923685 ATGTTTTCATAACATC
1 ATGTTTTCACAACATC
14923701 ATGTTTTCACAACAT
1 ATGTTTTCACAACAT
14923716 TGTTGAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.19, G:0.06, T:0.42
Consensus pattern (16 bp):
ATGTTTTCACAACATC
Found at i:14932277 original size:29 final size:29
Alignment explanation
Indices: 14932206--14932329 Score: 124
Period size: 29 Copynumber: 4.3 Consensus size: 29
14932196 AAATTCACAT
* * * *
14932206 ACATGTATATGGCCCACTAGACCC-AATT
1 ACATTTATATGGCCCATTAGGCCCAAATC
* * * *
14932234 ATATTCACATGGCCCATTAGGCCAAAATC
1 ACATTTATATGGCCCATTAGGCCCAAATC
*
14932263 ACATTTATATGGCCCTTTAGGCCCAAATC
1 ACATTTATATGGCCCATTAGGCCCAAATC
* * *
14932292 ACATTTATATGGCACATCAGGCCCAATTC
1 ACATTTATATGGCCCATTAGGCCCAAATC
*
14932321 AAATTTATA
1 ACATTTATA
14932330 GTCATGCTCA
Statistics
Matches: 77, Mismatches: 18, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
28 17 0.22
29 60 0.78
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.28
Consensus pattern (29 bp):
ACATTTATATGGCCCATTAGGCCCAAATC
Found at i:14932566 original size:16 final size:16
Alignment explanation
Indices: 14932545--14932583 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
14932535 TCAAACTTTC
*
14932545 AGCTTTTCGATATTTT
1 AGCTTTTCGACATTTT
14932561 AGCTTTTCGACATTTT
1 AGCTTTTCGACATTTT
*
14932577 GGCTTTT
1 AGCTTTT
14932584 ATCGATCTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.15, C:0.15, G:0.15, T:0.54
Consensus pattern (16 bp):
AGCTTTTCGACATTTT
Found at i:14936117 original size:27 final size:26
Alignment explanation
Indices: 14936069--14936128 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
14936059 GCGAGGCTGC
*
14936069 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
14936096 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
14936122 CAGATAT
1 CAGATAT
14936129 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:14936215 original size:27 final size:26
Alignment explanation
Indices: 14936167--14936218 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
14936157 GTGAGGCTGC
*
14936167 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
14936193 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
14936219 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:14936873 original size:27 final size:27
Alignment explanation
Indices: 14936843--14936934 Score: 121
Period size: 27 Copynumber: 3.4 Consensus size: 27
14936833 AGGGCAAAAT
* *
14936843 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATCTC
* *
14936870 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATCTC
*
14936897 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATCTC
**
14936924 AATAATTCTAC
1 GGTAATTCTAC
14936935 AACTTATCCA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATCTC
Found at i:14942446 original size:15 final size:15
Alignment explanation
Indices: 14942426--14942458 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
14942416 AATGAAACCC
14942426 ATAGGCCCATAGTAG
1 ATAGGCCCATAGTAG
14942441 ATAGGCCCATAGTAG
1 ATAGGCCCATAGTAG
14942456 ATA
1 ATA
14942459 TAGAACAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.21
Consensus pattern (15 bp):
ATAGGCCCATAGTAG
Found at i:14942643 original size:27 final size:26
Alignment explanation
Indices: 14942595--14942652 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 26
14942585 GTAAGGCTGC
*
14942595 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
14942622 CAGATATTGTGTCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
14942648 CAGAT
1 CAGAT
14942653 TTATATATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 6 0.22
27 21 0.78
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:14942743 original size:27 final size:26
Alignment explanation
Indices: 14942695--14942746 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
14942685 GCGAGGGTGC
*
14942695 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
14942721 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
14942747 GTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:14946362 original size:53 final size:53
Alignment explanation
Indices: 14946187--14946390 Score: 174
Period size: 53 Copynumber: 3.8 Consensus size: 53
14946177 AGGGTTTAAG
* * * * * * *
14946187 GATACCAAGTAAGACCATGCCAAGGCGTGGCATTGGTAAGTTTTACAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGCAAA
* * ** ** * * *
14946241 GAAATCATGTAAGACCATTTCAAGACATGGCTTTGATAAACTACGATAAGGCAAA
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGCAAA
* * * *
14946296 GATCCCATGTAAGACCATGCCAAGGCATGGCAATGTTAAGTTCATAAGGCAAC
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAA
* * *
14946349 GATACCATGTAAGACCATGTCAATACATGGAAATGGTAAGTT
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
14946391 TAAAAAGGAA
Statistics
Matches: 116, Mismatches: 32, Indels: 5
0.76 0.21 0.03
Matches are distributed among these distances:
53 45 0.39
54 33 0.28
55 38 0.33
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.23
Consensus pattern (53 bp):
GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAA
Found at i:14956801 original size:19 final size:21
Alignment explanation
Indices: 14956768--14956811 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
14956758 AAGTGATTAA
14956768 AAAACTAAGTAAAAT-AAAAT
1 AAAACTAAGTAAAATAAAAAT
*
14956788 AAAA-TAAGTTAAATAAAAAT
1 AAAACTAAGTAAAATAAAAAT
14956808 AAAA
1 AAAA
14956812 GTTCCAATGC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.73, C:0.02, G:0.05, T:0.20
Consensus pattern (21 bp):
AAAACTAAGTAAAATAAAAAT
Found at i:14964801 original size:161 final size:161
Alignment explanation
Indices: 14964536--14964856 Score: 624
Period size: 161 Copynumber: 2.0 Consensus size: 161
14964526 CATACAAAAC
14964536 ATTACTCATTAACCTACAAAAATTATATTCGGCCTTAGCACACAACTTGCTAGCCGATTCCTCCC
1 ATTACTCATTAACCTACAAAAATTATATTCGGCCTTAGCACACAACTTGCTAGCCGATTCCTCCC
14964601 CATCTAGCAACCAATGCACATATGTGCTCACTAAAAAATGCTAAAAAAAAAAAGAGATTCAAGAA
66 CATCTAGCAACCAATGCACATATGTGCTCACTAAAAAATGCTAAAAAAAAAAAGAGATTCAAGAA
14964666 TCATCAATCCACCATCACATGCATCATTAAT
131 TCATCAATCCACCATCACATGCATCATTAAT
*
14964697 ATTACTCATTAACCTACAAAAATTATATTCGGCCTTAGCACACAACTTGCTAGCCGATTCTTCCC
1 ATTACTCATTAACCTACAAAAATTATATTCGGCCTTAGCACACAACTTGCTAGCCGATTCCTCCC
*
14964762 CATCTAGCAACCAATGCACATATGTGCTCACTCAAAAATGCTAAAAAAAAAAAGAGATTCAAGAA
66 CATCTAGCAACCAATGCACATATGTGCTCACTAAAAAATGCTAAAAAAAAAAAGAGATTCAAGAA
14964827 TCATCAATCCACCATCACATGCATCATTAA
131 TCATCAATCCACCATCACATGCATCATTAA
14964857 CAAGCTTCAT
Statistics
Matches: 158, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
161 158 1.00
ACGTcount: A:0.40, C:0.26, G:0.09, T:0.25
Consensus pattern (161 bp):
ATTACTCATTAACCTACAAAAATTATATTCGGCCTTAGCACACAACTTGCTAGCCGATTCCTCCC
CATCTAGCAACCAATGCACATATGTGCTCACTAAAAAATGCTAAAAAAAAAAAGAGATTCAAGAA
TCATCAATCCACCATCACATGCATCATTAAT
Found at i:14968559 original size:20 final size:20
Alignment explanation
Indices: 14968534--14968575 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
14968524 ATACGCAAGG
14968534 TATGCTTCGCACCCTCTTCT
1 TATGCTTCGCACCCTCTTCT
14968554 TATGCTTCGCACCCTCTTCT
1 TATGCTTCGCACCCTCTTCT
14968574 TA
1 TA
14968576 CATATTTCTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.12, C:0.38, G:0.10, T:0.40
Consensus pattern (20 bp):
TATGCTTCGCACCCTCTTCT
Found at i:14971601 original size:49 final size:49
Alignment explanation
Indices: 14971541--14971778 Score: 266
Period size: 49 Copynumber: 4.8 Consensus size: 49
14971531 AGGCTATCTA
* * * *
14971541 GTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCAATTATCCA
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCG
* ** *
14971590 GTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTG
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACC-AATTATCCG
* * * * * *
14971640 ATACACGTAGTAGCCTACACTTAGTACTATGAC--GTGATCAAAGTTATCGG
1 GTACACATAGTAGCCTGCACTTAGTACTA-CACATGTGA-CCAA-TTATCCG
*
14971690 GTACGCATAGTAGCCTGCACTTAGTACTACACATAG-GACCAATTATCCG
1 GTACACATAGTAGCCTGCACTTAGTACTACACAT-GTGACCAATTATCCG
*
14971739 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACC
14971779 TCACAATAGA
Statistics
Matches: 157, Mismatches: 24, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
48 1 0.01
49 86 0.55
50 65 0.41
51 4 0.03
52 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCG
Found at i:14971724 original size:26 final size:26
Alignment explanation
Indices: 14971695--14971771 Score: 74
Period size: 26 Copynumber: 3.1 Consensus size: 26
14971685 ATCGGGTACG
14971695 CATAGTAGCCTGCACTTAGTACTACA
1 CATAGTAGCCTGCACTTAGTACTACA
* * *
14971721 CATAG--GAC--CAATTA-TCCGGTACA
1 CATAGTAGCCTGCACTTAGTAC--TACA
14971744 CATAGTAGCCTGCACTTAGTACTACA
1 CATAGTAGCCTGCACTTAGTACTACA
14971770 CA
1 CA
14971772 CGTGACCTCA
Statistics
Matches: 38, Mismatches: 6, Indels: 14
0.66 0.10 0.24
Matches are distributed among these distances:
21 2 0.05
22 5 0.13
23 9 0.24
24 2 0.05
25 2 0.05
26 11 0.29
27 5 0.13
28 2 0.05
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (26 bp):
CATAGTAGCCTGCACTTAGTACTACA
Found at i:14980707 original size:10 final size:10
Alignment explanation
Indices: 14980692--14980717 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
14980682 TTTCAGCTCA
14980692 TTATACTTAG
1 TTATACTTAG
14980702 TTATACTTAG
1 TTATACTTAG
14980712 TTATAC
1 TTATAC
14980718 CTTTGGTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.31, C:0.12, G:0.08, T:0.50
Consensus pattern (10 bp):
TTATACTTAG
Found at i:14982632 original size:35 final size:35
Alignment explanation
Indices: 14982579--14982654 Score: 134
Period size: 35 Copynumber: 2.2 Consensus size: 35
14982569 CTGAAATCAG
*
14982579 CAAGGGTAAGGCCATTGAAGGTTCCCAAAATTGAT
1 CAAGAGTAAGGCCATTGAAGGTTCCCAAAATTGAT
*
14982614 CAAGAGTAAGGCCGTTGAAGGTTCCCAAAATTGAT
1 CAAGAGTAAGGCCATTGAAGGTTCCCAAAATTGAT
14982649 CAAGAG
1 CAAGAG
14982655 ACATAATGTA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.36, C:0.17, G:0.26, T:0.21
Consensus pattern (35 bp):
CAAGAGTAAGGCCATTGAAGGTTCCCAAAATTGAT
Found at i:14985338 original size:30 final size:30
Alignment explanation
Indices: 14985304--14985364 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
14985294 TCCTTAACTC
14985304 AAACTTTAGAAAAATTACAATTTTTCCCCT
1 AAACTTTAGAAAAATTACAATTTTTCCCCT
* * * * *
14985334 AAACTTTTGCATATTTACACTTTTTCCCCT
1 AAACTTTAGAAAAATTACAATTTTTCCCCT
14985364 A
1 A
14985365 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.23, G:0.03, T:0.41
Consensus pattern (30 bp):
AAACTTTAGAAAAATTACAATTTTTCCCCT
Found at i:14991026 original size:50 final size:52
Alignment explanation
Indices: 14990916--14991035 Score: 181
Period size: 50 Copynumber: 2.3 Consensus size: 52
14990906 GTGAACAAAT
* *
14990916 GAGTTACTTAATGCATGAATTAATTTAATGATGCAAACTTTAACTAACATGG
1 GAGTTACATAATGCATGAATTAATTTAATGATGCAAACTTTAACTAACATGA
** *
14990968 GAGTTACATAATGCATGTCTTAATTT-ATGATGCAAAC-TTAACTTACATGA
1 GAGTTACATAATGCATGAATTAATTTAATGATGCAAACTTTAACTAACATGA
14991018 GAGTTACATAATGCATGA
1 GAGTTACATAATGCATGA
14991036 CTTTATTAAC
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
50 28 0.45
51 11 0.18
52 23 0.37
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.34
Consensus pattern (52 bp):
GAGTTACATAATGCATGAATTAATTTAATGATGCAAACTTTAACTAACATGA
Found at i:14991140 original size:39 final size:39
Alignment explanation
Indices: 14991060--14991140 Score: 108
Period size: 39 Copynumber: 2.1 Consensus size: 39
14991050 GAACACATAT
*** *
14991060 TAATGATGTTCAAACTATGACATAATTAAACACTCACAC
1 TAATGATGTTCAAACTATGACATAATTAAACAAAAAAAC
* *
14991099 TAATGATGTTCAAACTATGATATAATTAAAGAAAAAAAC
1 TAATGATGTTCAAACTATGACATAATTAAACAAAAAAAC
14991138 TAA
1 TAA
14991141 AATAACTAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.49, C:0.14, G:0.09, T:0.28
Consensus pattern (39 bp):
TAATGATGTTCAAACTATGACATAATTAAACAAAAAAAC
Found at i:14991147 original size:9 final size:9
Alignment explanation
Indices: 14991130--14991163 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
14991120 ATAATTAAAG
*
14991130 AAAAAAACT
1 AAAATAACT
14991139 AAAATAACT
1 AAAATAACT
*
14991148 AAAGTAACT
1 AAAATAACT
14991157 AAAATAA
1 AAAATAA
14991164 ATGAATCAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.71, C:0.09, G:0.03, T:0.18
Consensus pattern (9 bp):
AAAATAACT
Found at i:14991955 original size:6 final size:6
Alignment explanation
Indices: 14991944--14992227 Score: 262
Period size: 6 Copynumber: 46.8 Consensus size: 6
14991934 AACCAAAATG
* *
14991944 AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC AGTATT AGTAA-C
1 AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC
* * *
14991992 AGAATC AGAATC AAAATC AGAATC AGAATC AGAATC AGAATT AG-GTGAC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C
* * *
14992041 AGAATC AGAATC AGAGTC AGTAA-C AGAATC AGAATC AGAATC AGTATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC
* *
14992089 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * *
14992138 AGAGTC AGTAA-C AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
* *
14992186 AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAAT
14992228 GTGAATGCAA
Statistics
Matches: 227, Mismatches: 30, Indels: 42
0.76 0.10 0.14
Matches are distributed among these distances:
5 15 0.07
6 196 0.86
7 13 0.06
8 3 0.01
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:14992225 original size:85 final size:85
Alignment explanation
Indices: 14992040--14992199 Score: 143
Period size: 85 Copynumber: 1.9 Consensus size: 85
14992030 AATTAGGTGA
* * *
14992040 CAGAATCAGAATCAG-AGTCAGTAACAGAATCAGAATCAGAATCAGTATTA-GTAACAGAATCAG
1 CAGAATCAGAATCAGTA-TTAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAG
* * *
14992103 AATCAGAATCAG-AATTAG-GT
65 AATCAGAGTCAGTAA-CAGAAT
* * *
14992123 GACAGAATCAGAATCAG-AGTCAGTAACAGAATCAGAATCAGAATCAGTATTA-GTAACAGAATC
1 --CAGAATCAGAATCAGTA-TTAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGACAGAATC
*
14992186 AGAATCAGAATCAG
63 AGAATCAGAGTCAG
14992200 AATTAGGTGA
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 75 1.00
ACGTcount: A:0.46, C:0.15, G:0.19, T:0.19
Consensus pattern (85 bp):
CAGAATCAGAATCAGTATTAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAGA
ATCAGAGTCAGTAACAGAAT
Found at i:14992382 original size:27 final size:26
Alignment explanation
Indices: 14992345--14992410 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
14992335 AGCATGGCTG
*
14992345 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
14992371 CCAGATACAGATATTGTGCCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
14992398 CCAGAATCAGATA
1 CCAGAA-CAGATA
14992411 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.24, G:0.21, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:14992425 original size:27 final size:27
Alignment explanation
Indices: 14992369--14992426 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
14992359 GTGACAGAGT
* * *
14992369 CACCAGATACAGATATTGTGCCAGAGC
1 CACCAGATACAGATAATGTGCCAAACC
*
14992396 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGCCAAACC
14992423 CACC
1 CACC
14992427 TAACAGAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.36, C:0.29, G:0.19, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGCCAAACC
Found at i:14992631 original size:22 final size:22
Alignment explanation
Indices: 14992583--14992641 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
14992573 GTAAATACGT
*
14992583 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
14992605 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
14992627 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
14992642 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:14992810 original size:27 final size:26
Alignment explanation
Indices: 14992732--14992811 Score: 97
Period size: 27 Copynumber: 3.0 Consensus size: 26
14992722 ATCGGTCAAT
* * *
14992732 AGATATTGTGACAGAGTCACCAAATAC
1 AGATATTGTGGCAGAGCCACCAGA-AC
*
14992759 AGATATTGTGGCAGAGCCACTAGAAC
1 AGATATTGTGGCAGAGCCACCAGAAC
*
14992785 AGATATTTGTGGCATAGCCACCAGAAC
1 AGATA-TTGTGGCAGAGCCACCAGAAC
14992812 GCTTCCTCCG
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 7 0.15
27 39 0.85
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.21
Consensus pattern (26 bp):
AGATATTGTGGCAGAGCCACCAGAAC
Found at i:14993040 original size:27 final size:27
Alignment explanation
Indices: 14993010--14993205 Score: 212
Period size: 27 Copynumber: 7.3 Consensus size: 27
14993000 GGGGCAAAAT
* * *
14993010 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
14993037 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
14993064 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
14993091 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
14993118 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
14993145 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * * *
14993172 AGAAATTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
14993199 AGTAATT
1 GGTAATT
14993206 TCACAATCAA
Statistics
Matches: 146, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 146 1.00
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:14993067 original size:54 final size:54
Alignment explanation
Indices: 14993009--14993170 Score: 236
Period size: 54 Copynumber: 3.0 Consensus size: 54
14992999 AGGGGCAAAA
* *
14993009 TGGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
*
14993063 TGGT-ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTT
1 TGGTAATTT-TACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
* * * * *
14993117 TGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTT
1 TGGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
14993171 CAGAAATTCT
Statistics
Matches: 97, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
53 4 0.04
54 90 0.93
55 3 0.03
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (54 bp):
TGGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
Found at i:14993179 original size:54 final size:53
Alignment explanation
Indices: 14993026--14993205 Score: 236
Period size: 54 Copynumber: 3.3 Consensus size: 53
14993016 TTTACCCCAC
* * * *
14993026 AAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTTGGTATTTCTACCCTAC
1 AAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTA-CCTAT
14993080 AAGGGTATTTC-GATAATTCTACCCTACAGGGGTATTTTGGTAATTCTATCCTAT
1 AAGGGTATTTCAG-TAATTCTACCCTACAGGGGTATTTTGGTAATTCTA-CCTAT
* ** *
14993134 AAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAGAAATTCTACCTTAT
1 AAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACC-TAT
*
14993188 AGGGGTATTTCAGTAATT
1 AAGGGTATTTCAGTAATT
14993206 TCACAATCAA
Statistics
Matches: 114, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
53 3 0.03
54 110 0.96
55 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.37
Consensus pattern (53 bp):
AAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCTAT
Found at i:14993240 original size:27 final size:27
Alignment explanation
Indices: 14993210--14993538 Score: 394
Period size: 27 Copynumber: 12.2 Consensus size: 27
14993200 GTAATTTCAC
* * *
14993210 AATCAAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
14993237 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
14993264 AA-CTGAGGGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
** * * **
14993291 AATTAAGGGTAAAATGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
14993318 AATTGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
14993345 AATCGAGGGTAAAACAGCAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
14993372 AA-CTAAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
14993399 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
14993426 AA-CTGAGGGTAAAACGGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* **
14993453 AATCGAGGGTAAAACGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
14993480 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
14993507 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
14993534 AATCG
1 AATCG
14993539 GGAGTACTTT
Statistics
Matches: 257, Mismatches: 39, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
26 3 0.01
27 252 0.98
28 2 0.01
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:14993538 original size:81 final size:81
Alignment explanation
Indices: 14993210--14993537 Score: 446
Period size: 81 Copynumber: 4.0 Consensus size: 81
14993200 GTAATTTCAC
* *
14993210 AATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAACTGAGGGTA
1 AATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAACTGAGGGTA
*
14993275 AACCAGTAATTCTGTA
66 AAACAGTAATTCTGTA
* * * * * * *
14993291 AATTAAGGGTAAAATGGTAATTTTACAAATTGAGGGTAAAATGGTAATTCTGTAAA-TCGAGGGT
1 AATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAACT-GAGGGT
*
14993355 AAAACAGCAATTCTGTA
65 AAAACAGTAATTCTGTA
*
14993372 AA-CTAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAACTGAGGGT
1 AATC-AAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAACTGAGGGT
* *
14993436 AAAACGGTAATTCTATA
65 AAAACAGTAATTCTGTA
* * *
14993453 AATCGAGGGTAAAACGGTAATTTTAAAAATCGAGGGTAAAACGATAATTCTGTAAA-TCGAGGGT
1 AATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAACT-GAGGGT
*
14993517 AAAACGGTAATTCTGTA
65 AAAACAGTAATTCTGTA
14993534 AATC
1 AATC
14993538 GGGAGTACTT
Statistics
Matches: 217, Mismatches: 25, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
80 2 0.01
81 213 0.98
82 2 0.01
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (81 bp):
AATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAACTGAGGGTA
AAACAGTAATTCTGTA
Found at i:14996808 original size:37 final size:37
Alignment explanation
Indices: 14996758--14996836 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
14996748 TTATTACGAA
* *
14996758 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
* *
14996795 GTCTTACCTGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
14996832 GTCTT
1 GTCTT
14996837 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:14997033 original size:47 final size:47
Alignment explanation
Indices: 14996955--14997355 Score: 532
Period size: 47 Copynumber: 8.4 Consensus size: 47
14996945 CCCTTCGGGA
* * * * * * *
14996955 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
***
14997002 CCCGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14997049 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
14997098 CTTATCATACATATACACTTTCACCTTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14997145 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
14997194 CTTATCATACATATACACTTTCACCTTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14997241 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
14997290 CTTATCACACATATACACTTTCACCTTCATCACATCGGCCGTTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14997337 CTTATCACATATATACACT
1 CTTATCACATATATACACT
14997356 ATCTTGGCTG
Statistics
Matches: 309, Mismatches: 39, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
47 179 0.58
49 130 0.42
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:14997117 original size:96 final size:96
Alignment explanation
Indices: 14997012--14997351 Score: 635
Period size: 96 Copynumber: 3.5 Consensus size: 96
14997002 CCCGTCACAT
*
14997012 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACAT
1 ATATACACTTTCACCTTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACAT
14997077 TCATCACATCGGCTATTAGGCCTTATCATAC
66 TCATCACATCGGCTATTAGGCCTTATCATAC
*
14997108 ATATACACTTTCACCTTCATCGCATCGGCCATTAGGCCTTATCACATATATATACACTTTCACAT
1 ATATACACTTTCACCTTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACAT
14997173 TCATCACATCGGCTATTAGGCCTTATCATAC
66 TCATCACATCGGCTATTAGGCCTTATCATAC
*
14997204 ATATACACTTTCACCTTCATCGCATCGGCCATTAGGCCTTATCACATATATATACACTTTCACAT
1 ATATACACTTTCACCTTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACAT
*
14997269 TCATCACATCGGCTATTAGGCCTTATCACAC
66 TCATCACATCGGCTATTAGGCCTTATCATAC
*
14997300 ATATACACTTTCACCTTCATCACATCGGCCGTTAGGCCTTATCACATATATA
1 ATATACACTTTCACCTTCATCACATCGGCCATTAGGCCTTATCACATATATA
14997352 CACTATCTTG
Statistics
Matches: 239, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
96 239 1.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (96 bp):
ATATACACTTTCACCTTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACAT
TCATCACATCGGCTATTAGGCCTTATCATAC
Found at i:14998263 original size:66 final size:66
Alignment explanation
Indices: 14998157--14998287 Score: 244
Period size: 66 Copynumber: 2.0 Consensus size: 66
14998147 TAAGCTAAAC
*
14998157 CACCTCATAGTATACATATACACATTCGGCGAATTATAAAACAAATCAGCACTGATAACCGAATC
1 CACCTCATAGTATACATATACACATTCGGCGAATTATAAAACAAATCAGCACTCATAACCGAATC
14998222 A
66 A
*
14998223 CACCTCATAGTATACATATACACATTCGGCTAATTATAAAACAAATCAGCACTCATAACCGAATC
1 CACCTCATAGTATACATATACACATTCGGCGAATTATAAAACAAATCAGCACTCATAACCGAATC
14998288 TTTGACTAAA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.42, C:0.25, G:0.09, T:0.24
Consensus pattern (66 bp):
CACCTCATAGTATACATATACACATTCGGCGAATTATAAAACAAATCAGCACTCATAACCGAATC
A
Found at i:15000709 original size:40 final size:40
Alignment explanation
Indices: 15000652--15000834 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 40
15000642 CCAGCATGAT
* *
15000652 TGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
15000692 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
15000732 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAA
* *
15000773 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAA
*
15000813 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
15000835 CATCATTCGA
Statistics
Matches: 119, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
39 3 0.03
40 96 0.81
41 20 0.17
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:15001182 original size:29 final size:29
Alignment explanation
Indices: 15001143--15001221 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
15001133 CTTAATAATC
*
15001143 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
15001173 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
15001202 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
15001222 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Done.