Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 46 of 313
Found at i:15290842 original size:5 final size:5
Alignment explanation
Indices: 15290832--15290857 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
15290822 TTTAAATTTG
15290832 AAAAT AAAAT AAAAT AAAAT AAAAT A
1 AAAAT AAAAT AAAAT AAAAT AAAAT A
15290858 CAAACCAAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:15298084 original size:3 final size:3
Alignment explanation
Indices: 15298076--15298111 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
15298066 TTGACCAATG
15298076 TAT TAT TAT TAT TAT TAT TAT TAT TAT T-T TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
15298112 CACCATTCAT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:15310776 original size:35 final size:37
Alignment explanation
Indices: 15310710--15310781 Score: 103
Period size: 35 Copynumber: 2.0 Consensus size: 37
15310700 CATGTGGAGC
* * *
15310710 TAGGTGTTGGTCTTTTTTGATGACTTGTGTTTGTTTT
1 TAGGTGTTGGTCTTTTCTGATAACTTGTGTTTATTTT
15310747 TAGGTGTTGG-CTTTTCT-ATAACTTGTGTTTATTTT
1 TAGGTGTTGGTCTTTTCTGATAACTTGTGTTTATTTT
15310782 ATTTTATTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
35 16 0.50
36 6 0.19
37 10 0.31
ACGTcount: A:0.11, C:0.07, G:0.24, T:0.58
Consensus pattern (37 bp):
TAGGTGTTGGTCTTTTCTGATAACTTGTGTTTATTTT
Found at i:15313722 original size:27 final size:27
Alignment explanation
Indices: 15313684--15313750 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
15313674 TTATTCCGAT
* * *
15313684 GGGACGTTAAACACGAGGTAG-CTCAAG
1 GGGACATTAAACACGAGATAGTCT-AAC
15313711 GGGACATTAAACACGAGATAGTCTAAC
1 GGGACATTAAACACGAGATAGTCTAAC
*
15313738 GGGACACTAAACA
1 GGGACATTAAACA
15313751 TGGGGTAGTT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 33 0.94
28 2 0.06
ACGTcount: A:0.39, C:0.19, G:0.27, T:0.15
Consensus pattern (27 bp):
GGGACATTAAACACGAGATAGTCTAAC
Found at i:15316215 original size:39 final size:39
Alignment explanation
Indices: 15316172--15316258 Score: 165
Period size: 39 Copynumber: 2.2 Consensus size: 39
15316162 CCGGCAATTA
15316172 GCCTGCTAGGTATAAACCTGAACTTATCACCGGCACGAG
1 GCCTGCTAGGTATAAACCTGAACTTATCACCGGCACGAG
*
15316211 GCCTGCTAGGTATAAACCTGAATTTATCACCGGCACGAG
1 GCCTGCTAGGTATAAACCTGAACTTATCACCGGCACGAG
15316250 GCCTGCTAG
1 GCCTGCTAG
15316259 ACATTAAGTC
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 47 1.00
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (39 bp):
GCCTGCTAGGTATAAACCTGAACTTATCACCGGCACGAG
Found at i:15320062 original size:26 final size:27
Alignment explanation
Indices: 15320032--15320083 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
15320022 ATATTTTTTT
*
15320032 TATTTCCCA-AAATAAACTTCTCAATG
1 TATTTCCAATAAATAAACTTCTCAATG
*
15320058 TATTTCCAATTAAATAATCTTCTCAA
1 TATTTCCAA-TAAATAAACTTCTCAA
15320084 CTTAATTCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 8 0.36
28 14 0.64
ACGTcount: A:0.38, C:0.21, G:0.02, T:0.38
Consensus pattern (27 bp):
TATTTCCAATAAATAAACTTCTCAATG
Found at i:15320096 original size:28 final size:28
Alignment explanation
Indices: 15320041--15320096 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
15320031 TTATTTCCCA
*
15320041 AAATAAACTTCTCAATGTATTTCCAATT
1 AAATAAACTTCTCAATGTAATTCCAATT
* *
15320069 AAATAATCTTCTCAACT-TAATTCTAATT
1 AAATAAACTTCTCAA-TGTAATTCCAATT
15320097 TTGTTAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 23 0.96
29 1 0.04
ACGTcount: A:0.39, C:0.18, G:0.02, T:0.41
Consensus pattern (28 bp):
AAATAAACTTCTCAATGTAATTCCAATT
Found at i:15320342 original size:57 final size:57
Alignment explanation
Indices: 15320242--15320418 Score: 239
Period size: 57 Copynumber: 3.1 Consensus size: 57
15320232 TTTTTTAGGT
* * *
15320242 CATTTTCATTTTCGTTTTGGAGAAAACCAC-ATCCATTTTCAAATGTTTCTATTTCTC
1 CATTATCATTTTCATTTTGGAGAAAACCACAAT-CATTTCCAAATGTTTCTATTTCTC
* * *
15320299 TATTATCATTTTCATTTTGGAGAAAACCACAATCGTTTCCAAATGATTCTATTTCTC
1 CATTATCATTTTCATTTTGGAGAAAACCACAATCATTTCCAAATGTTTCTATTTCTC
* * *
15320356 CATTTTCATTTTCATTTTGGACAAAACCACAATTATTTCCAAATGATTTCTCATTTCTC
1 CATTATCATTTTCATTTTGGAGAAAACCACAATCATTTCCAAATG-TTTCT-ATTTCTC
15320415 CATT
1 CATT
15320419 TTTACCATAT
Statistics
Matches: 105, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
57 88 0.84
58 6 0.06
59 11 0.10
ACGTcount: A:0.28, C:0.21, G:0.07, T:0.44
Consensus pattern (57 bp):
CATTATCATTTTCATTTTGGAGAAAACCACAATCATTTCCAAATGTTTCTATTTCTC
Found at i:15321822 original size:18 final size:18
Alignment explanation
Indices: 15321801--15321838 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
15321791 CAAAATTTAC
15321801 ATTTGCATT-TGTATCTGA
1 ATTTG-ATTATGTATCTGA
*
15321819 ATTTGATTATGTGTCTGA
1 ATTTGATTATGTATCTGA
15321837 AT
1 AT
15321839 CTAAATATGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 3 0.17
18 15 0.83
ACGTcount: A:0.24, C:0.08, G:0.18, T:0.50
Consensus pattern (18 bp):
ATTTGATTATGTATCTGA
Found at i:15323807 original size:18 final size:19
Alignment explanation
Indices: 15323786--15323829 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
15323776 CTAATTTAAT
*
15323786 TAAAAAA-TTATATTTTTA
1 TAAAAAAGTTATATTATTA
15323804 TAAAATAAGTTATATTATTA
1 TAAAA-AAGTTATATTATTA
15323824 TAAAAA
1 TAAAAA
15323830 TAATTTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 5 0.22
19 3 0.13
20 15 0.65
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (19 bp):
TAAAAAAGTTATATTATTA
Found at i:15344281 original size:112 final size:112
Alignment explanation
Indices: 15344084--15344314 Score: 444
Period size: 112 Copynumber: 2.1 Consensus size: 112
15344074 AAGAAGAACT
*
15344084 CATGAACATCAAGATAGAAGCAAAGTACCAAGAACTTACCTTCAATTTTTCCCCCTCCTAGTGAC
1 CATGAACATCAAGATAGAAGCAAAGTACCAAGAACTTACCTTCAATTTTTCCCCCTCCTAATGAC
15344149 CGAATATTCAAGGGTTTCCTCCCCTATTTGCTCTCTCTCAAATTCGA
66 CGAATATTCAAGGGTTTCCTCCCCTATTTGCTCTCTCTCAAATTCGA
15344196 CATGAACATCAAGATAGAAGCAAAGTACCAAGAACTTACCTTCAATTTTTCCCCCTCCTAATGAC
1 CATGAACATCAAGATAGAAGCAAAGTACCAAGAACTTACCTTCAATTTTTCCCCCTCCTAATGAC
15344261 CGAATATTCAAGGGTTTCCTCCCCTATTTGCTCTCTCTCAAATTCGA
66 CGAATATTCAAGGGTTTCCTCCCCTATTTGCTCTCTCTCAAATTCGA
15344308 CTATGAA
1 C-ATGAA
15344315 GAACAAAGAA
Statistics
Matches: 117, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
112 112 0.96
113 5 0.04
ACGTcount: A:0.30, C:0.28, G:0.12, T:0.29
Consensus pattern (112 bp):
CATGAACATCAAGATAGAAGCAAAGTACCAAGAACTTACCTTCAATTTTTCCCCCTCCTAATGAC
CGAATATTCAAGGGTTTCCTCCCCTATTTGCTCTCTCTCAAATTCGA
Found at i:15344499 original size:32 final size:32
Alignment explanation
Indices: 15344457--15344521 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
15344447 AATGTTTATC
15344457 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
*
15344489 ATGCCTATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
15344521 A
1 A
15344522 AATGCATACA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.38, C:0.23, G:0.06, T:0.32
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:15344541 original size:32 final size:32
Alignment explanation
Indices: 15344463--15344542 Score: 92
Period size: 32 Copynumber: 2.5 Consensus size: 32
15344453 TATCATGCCC
* *
15344463 ATCATCCATTAACTATTAAAATGCTAATGCCT
1 ATCATCCATCAACTATTAAAATGCTAATGCAT
*
15344495 ATCATCCATTAACTATTAAAATGCTAAAATGCAT
1 ATCATCCATCAACTATTAAAATGCT--AATGCAT
*
15344529 A-CAT-TATCAACTAT
1 ATCATCCATCAACTAT
15344543 CCATCACCTT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
32 33 0.77
33 3 0.07
34 7 0.16
ACGTcount: A:0.41, C:0.20, G:0.05, T:0.34
Consensus pattern (32 bp):
ATCATCCATCAACTATTAAAATGCTAATGCAT
Found at i:15350995 original size:25 final size:27
Alignment explanation
Indices: 15350958--15351010 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
15350948 TCAAACATGC
15350958 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
15350984 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
15351010 A
1 A
15351011 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:15351060 original size:28 final size:27
Alignment explanation
Indices: 15351019--15351071 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
15351009 TAAAACTGTA
15351019 AATTTTCTACTTTTAAAGGTATTTCAGT
1 AATTTTCTACTTTT-AAGGTATTTCAGT
*
15351047 AATTTATCTA-TTTTAAGGTTTTTCA
1 AATTT-TCTACTTTTAAGGTATTTCA
15351072 TGTATATTCC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 10 0.43
28 9 0.39
29 4 0.17
ACGTcount: A:0.28, C:0.09, G:0.09, T:0.53
Consensus pattern (27 bp):
AATTTTCTACTTTTAAGGTATTTCAGT
Found at i:15377891 original size:28 final size:26
Alignment explanation
Indices: 15377828--15377900 Score: 78
Period size: 28 Copynumber: 2.7 Consensus size: 26
15377818 ATTTTATTAG
15377828 TAATAA-ATTTTTAATTAAATATTTAA
1 TAATAATA-TTTTAATTAAATATTTAA
*
15377854 TAATAATATTTTAATTGATAATTTTTAA
1 TAATAATATTTTAATT-A-AATATTTAA
*
15377882 -AATTATTATTTTAATTAAA
1 TAA-TAATATTTTAATTAAA
15377901 AATAAAATTA
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
26 16 0.39
27 5 0.12
28 20 0.49
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (26 bp):
TAATAATATTTTAATTAAATATTTAA
Found at i:15381762 original size:46 final size:44
Alignment explanation
Indices: 15381703--15381817 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
15381693 ACAGGACAGA
* *
15381703 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
15381749 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
15381793 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
15381818 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:15381798 original size:44 final size:45
Alignment explanation
Indices: 15381703--15381836 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
15381693 ACAGGACAGA
* *
15381703 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
15381749 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
15381793 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
15381837 CAGGGTATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:15387462 original size:15 final size:15
Alignment explanation
Indices: 15387440--15387477 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
15387430 TTTCAAATGA
15387440 TTTT-ATTTCTCCAT
1 TTTTCATTTCTCCAT
*
15387454 TTTTCATTT-TTCAT
1 TTTTCATTTCTCCAT
15387468 TTTTCATTTC
1 TTTTCATTTC
15387478 GGAGAAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 17 0.81
15 4 0.19
ACGTcount: A:0.13, C:0.18, G:0.00, T:0.68
Consensus pattern (15 bp):
TTTTCATTTCTCCAT
Found at i:15387470 original size:6 final size:7
Alignment explanation
Indices: 15387451--15387476 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
15387441 TTTATTTCTC
15387451 CATTTTT
1 CATTTTT
15387458 CATTTTT
1 CATTTTT
15387465 CATTTTT
1 CATTTTT
15387472 CATTT
1 CATTT
15387477 CGGAGAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.69
Consensus pattern (7 bp):
CATTTTT
Found at i:15388290 original size:23 final size:23
Alignment explanation
Indices: 15388262--15388308 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
15388252 TATTTATATC
15388262 ATATATTGATTAAATGAAATAAAAA
1 ATATA-TGATTAAAT-AAATAAAAA
*
15388287 ATATATTATTAAATAAATAAAA
1 ATATATGATTAAATAAATAAAA
15388309 TAATTAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 8 0.38
24 8 0.38
25 5 0.24
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (23 bp):
ATATATGATTAAATAAATAAAAA
Found at i:15396004 original size:61 final size:61
Alignment explanation
Indices: 15395909--15396032 Score: 230
Period size: 61 Copynumber: 2.0 Consensus size: 61
15395899 TGTTACATTT
*
15395909 TTACTTCCTAACCTCCTATCTATTACTTAATTATAGATCTAGACATCTAATTTTAGCTCAA
1 TTACTTCCGAACCTCCTATCTATTACTTAATTATAGATCTAGACATCTAATTTTAGCTCAA
*
15395970 TTACTTCCGAACCTCCTATCTATTACTTAATTATAGATCTAGACGTCTAATTTTAGCTCAA
1 TTACTTCCGAACCTCCTATCTATTACTTAATTATAGATCTAGACATCTAATTTTAGCTCAA
15396031 TT
1 TT
15396033 TCATTAATTA
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.30, C:0.23, G:0.06, T:0.41
Consensus pattern (61 bp):
TTACTTCCGAACCTCCTATCTATTACTTAATTATAGATCTAGACATCTAATTTTAGCTCAA
Found at i:15402334 original size:27 final size:27
Alignment explanation
Indices: 15402303--15402480 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
15402293 TAAATTGTAC
15402303 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
15402330 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
15402356 ATGCACTAAGTGTGCGAATTAACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
15402384 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
15402412 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
15402439 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
15402466 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
15402481 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 105 0.83
28 22 0.17
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:15402417 original size:82 final size:81
Alignment explanation
Indices: 15402304--15402454 Score: 232
Period size: 82 Copynumber: 1.9 Consensus size: 81
15402294 AAATTGTACA
* *
15402304 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
15402368 TGCGAATTAACCATGCG
65 TGCGAATTAACCATGCG
** *
15402385 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
15402450 TGCGA
65 TGCGA
15402455 GTTGATTATA
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.24
82 47 0.75
83 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTAACCATGCG
Found at i:15405046 original size:15 final size:16
Alignment explanation
Indices: 15405026--15405055 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
15405016 GAAAATTGCC
15405026 AAAATGGG-CTAAATA
1 AAAATGGGACTAAATA
15405041 AAAATGGGACTAAAT
1 AAAATGGGACTAAAT
15405056 TGGAATATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.53, C:0.07, G:0.20, T:0.20
Consensus pattern (16 bp):
AAAATGGGACTAAATA
Found at i:15407961 original size:25 final size:25
Alignment explanation
Indices: 15407933--15408011 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
15407923 CTAATGGCCG
15407933 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
15407958 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
15407980 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
15408005 ATGTGAT
1 ATGTGAT
15408012 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:15407983 original size:47 final size:47
Alignment explanation
Indices: 15407917--15408530 Score: 978
Period size: 47 Copynumber: 13.1 Consensus size: 47
15407907 GAAATGATAG
15407917 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
15407964 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * *
15408011 TAAGGCCTAATAGCCGACGTGATGAATGTGAATGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
15408058 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
15408105 TAAGGCCAAATGGTCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
15408152 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
15408199 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
15408246 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
15408293 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAGATAGGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
15408340 TAAGGCCTAATAGCCGATGAGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
15408387 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
15408434 TAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * *
15408480 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
15408527 TAAG
1 TAAG
15408531 TCCCGAAGGG
Statistics
Matches: 533, Mismatches: 33, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
46 40 0.08
47 493 0.92
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:15417347 original size:21 final size:21
Alignment explanation
Indices: 15417323--15417364 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
15417313 TCATCAGATC
*
15417323 TACACCTTGAGGCATCGGGGG
1 TACACCTTGAGGAATCGGGGG
**
15417344 TACAGGTTGAGGAATCGGGGG
1 TACACCTTGAGGAATCGGGGG
15417365 AGGTGGGGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.17, G:0.43, T:0.19
Consensus pattern (21 bp):
TACACCTTGAGGAATCGGGGG
Found at i:15418730 original size:49 final size:50
Alignment explanation
Indices: 15418605--15418763 Score: 200
Period size: 49 Copynumber: 3.2 Consensus size: 50
15418595 CTAGTACGCA
* *
15418605 TAGTAGCCTGCACATAGTACTACACA--TGCAAACAATTATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGC-AACAATTATCCGGTACACG
*
15418654 TAGTAGCCTGCACTTAGTACTACACACGTGC-ACAATTATTCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGCAACAATTATCCGGTACACG
* ** * *
15418703 TAGTAGCCTGCACTTAGTACTACACACGTG-ACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGCAAC-AATTATCCGGTACACG
15418753 TAGTAGCCTGC
1 TAGTAGCCTGC
15418764 GGAACTTATG
Statistics
Matches: 97, Mismatches: 9, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
49 72 0.74
50 22 0.23
51 3 0.03
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGCAACAATTATCCGGTACACG
Found at i:15420742 original size:21 final size:21
Alignment explanation
Indices: 15420716--15420759 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
15420706 ATAAGGGGAT
*
15420716 CCATAAATTGAGTTAATGCAA
1 CCATAAATCGAGTTAATGCAA
15420737 CCATAAATCGAGTTAATGCAA
1 CCATAAATCGAGTTAATGCAA
15420758 CC
1 CC
15420760 CTAGAGTGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.41, C:0.20, G:0.14, T:0.25
Consensus pattern (21 bp):
CCATAAATCGAGTTAATGCAA
Found at i:15430167 original size:33 final size:33
Alignment explanation
Indices: 15430125--15430190 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
15430115 TCGGCACCAA
15430125 CATGGAGGGAATTGGCTGAGTTTTGGCTTATTT
1 CATGGAGGGAATTGGCTGAGTTTTGGCTTATTT
15430158 CATGGAGGGAATTGGCTGAGTTTTGGCTTATTT
1 CATGGAGGGAATTGGCTGAGTTTTGGCTTATTT
15430191 TGTAACACCC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.18, C:0.09, G:0.33, T:0.39
Consensus pattern (33 bp):
CATGGAGGGAATTGGCTGAGTTTTGGCTTATTT
Found at i:15431626 original size:79 final size:77
Alignment explanation
Indices: 15431528--15431746 Score: 233
Period size: 80 Copynumber: 2.8 Consensus size: 77
15431518 TCGTTCAAGT
* * *
15431528 GCCTTCGGGACATAGCCCGGTTATAGTAACTCATACAATGCCTTCGGGACTTAACCCGGAATTAG
1 GCCTTCGGGACTTAGCCCGG-TATAGTAACTCACACAA-GCCTTCGGGACTTAACCCGGAATTAA
*
15431593 TATCTCGCACAAAG
64 TAACTCGCACAAAG
* * * *
15431607 GCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATTA
1 GCCTTCGGGACTTAGCCCGGTA-TAGTAACTCACAC-AA-GCCTTCGGGACTTAACCCGGAATTA
*
15431672 ATAACTCGCACAAAT
63 ATAACTCGCACAAAG
* * * * *
15431687 GCCTTC-GGATCTTAGTCCGGATATTGTCACTTAGCACAAGCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGA-CTTAGCCCGG-TATAGTAACTCA-CACAAGCCTTCGGGACTTAACCCGGA
15431747 CAGCATTCAA
Statistics
Matches: 116, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
78 1 0.01
79 51 0.44
80 60 0.52
81 4 0.03
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (77 bp):
GCCTTCGGGACTTAGCCCGGTATAGTAACTCACACAAGCCTTCGGGACTTAACCCGGAATTAATA
ACTCGCACAAAG
Found at i:15431707 original size:40 final size:40
Alignment explanation
Indices: 15431567--15431694 Score: 229
Period size: 40 Copynumber: 3.2 Consensus size: 40
15431557 CTCATACAAT
15431567 GCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAG
1 GCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAG
15431607 GCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAG
1 GCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAG
* * *
15431647 GCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAAT
1 GCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAG
15431687 GCCTTCGG
1 GCCTTCGG
15431695 ATCTTAGTCC
Statistics
Matches: 85, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 85 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
GCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAG
Found at i:15443987 original size:52 final size:51
Alignment explanation
Indices: 15443872--15444048 Score: 243
Period size: 51 Copynumber: 3.5 Consensus size: 51
15443862 ACTAGTGACT
* *
15443872 CAAGTGTGGTACTGTGTGAAGGCCACTTTGAGAAG-AGATAGC-TTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCA
*
15443921 CAAGTGCGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGCTTTGGTCA
* * *
15443973 CAAGTGTGGTACTATGTGAAGGCCACTTTTTGAAGAAGGTAGCTTT-GACTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTC-A
* *
15444024 CAAGGGTGGTACTATGTGCAGGCCA
1 CAAGTGTGGTACTATGTGAAGGCCA
15444049 TTGGGTATCC
Statistics
Matches: 115, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
49 32 0.28
50 2 0.02
51 41 0.36
52 40 0.35
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (51 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCA
Found at i:15446869 original size:47 final size:47
Alignment explanation
Indices: 15446798--15447013 Score: 196
Period size: 47 Copynumber: 4.6 Consensus size: 47
15446788 GGTAAGGTGC
15446798 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCAT-ATCTCAAGT
1 CGATGCCATGTCCCAGACA-GGTCTTACACTAGCTCATCATCTCAAGT
**
15446845 CGATGCCATGTCCCAGACAGGGTCTTACACT-GACT-ATCATCTTGTAG-
1 CGATGCCATGTCCCAGACA-GGTCTTACACTAG-CTCATCATC-TCAAGT
* * * ** *
15446892 CTGATG-CATGTCCCAGACATGTCTTACACTGGCTTA-CGCCTCGAGGT
1 C-GATGCCATGTCCCAGACAGGTCTTACACTAGCTCATCATCTC-AAGT
* * * *
15446939 CGATG-CATCTCCCAGACATGTCTTACACTAGCTC-TCGTCTCAATGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTAGCTCATCATCTCAA-GT
15446985 CGATGCCATGTCCCAGACATGGTCTTACA
1 CGATGCCATGTCCCAGACA-GGTCTTACA
15447014 TTGGCTCTCA
Statistics
Matches: 140, Mismatches: 17, Indels: 23
0.78 0.09 0.13
Matches are distributed among these distances:
45 2 0.01
46 59 0.42
47 64 0.46
48 15 0.11
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTAGCTCATCATCTCAAGT
Found at i:15446944 original size:46 final size:47
Alignment explanation
Indices: 15446798--15447061 Score: 195
Period size: 47 Copynumber: 5.6 Consensus size: 47
15446788 GGTAAGGTGC
* * * *
15446798 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTC-AAGT
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCGAGGT
* * * *
15446845 CGATGCCATGTCCCAGACAGGGTCTTACACTGAC-TATCATCTTGTAGCT
1 CGATGCCATGTCCCAGACA-TGTCTTACACTGGCTTA-CATCTCG-AGGT
**
15446894 -GATG-CATGTCCCAGACATGTCTTACACTGGCTTACGCCTCGAGGT
1 CGATGCCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGT
* * * * * *
15446939 CGATG-CATCTCCCAGACATGTCTTACACTAGCTCT-CGTCTCAATGC
1 CGATGCCATGTCCCAGACATGTCTTACACTGGCT-TACATCTCGAGGT
* * * *
15446985 CGATGCCATGTCCCAGACATGGTCTTACATTGGCTCT-CATAAT-GTGGC
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-CTCGAGGT
* *
15447033 CGATG-CATGTCTCAGACATGTATTACACT
1 CGATGCCATGTCCCAGACATGTCTTACACT
15447062 AGCTCACACA
Statistics
Matches: 176, Mismatches: 31, Indels: 21
0.77 0.14 0.09
Matches are distributed among these distances:
45 3 0.02
46 67 0.38
47 76 0.43
48 27 0.15
49 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGT
Found at i:15447060 original size:140 final size:141
Alignment explanation
Indices: 15446798--15447061 Score: 372
Period size: 140 Copynumber: 1.9 Consensus size: 141
15446788 GGTAAGGTGC
* *
15446798 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAAGTCGATGCCATGTCCCAGAC
1 CGATGCCATCTCCCAGACATGGTCTTACACTAGCTCATATCTCAAGCCGATGCCATGTCCCAGAC
** * *
15446863 AGGGTCTTACACTGACTATCATCTTGTAGCTGATGCATGTCCCAGACATGTCTTACACTGGCTTA
66 AGGGTCTTACACTGACTATCATAATGTAGCCGATGCATGTCCCAGACATGTATTACACTGGCTTA
15446928 CGCCTCGAGGT
131 CGCCTCGAGGT
*
15446939 CGATG-CATCTCCCAGACAT-GTCTTACACTAGCTC-TCGTCTCAATGCCGATGCCATGTCCCAG
1 CGATGCCATCTCCCAGACATGGTCTTACACTAGCTCAT-ATCTCAA-GCCGATGCCATGTCCCAG
* * * * * *
15447001 ACATGGTCTTACATTGGCTCTCATAATGTGGCCGATGCATGTCTCAGACATGTATTACACT
64 ACAGGGTCTTACACTGACTATCATAATGTAGCCGATGCATGTCCCAGACATGTATTACACT
15447062 AGCTCACACA
Statistics
Matches: 108, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
138 1 0.01
139 21 0.19
140 81 0.75
141 5 0.05
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (141 bp):
CGATGCCATCTCCCAGACATGGTCTTACACTAGCTCATATCTCAAGCCGATGCCATGTCCCAGAC
AGGGTCTTACACTGACTATCATAATGTAGCCGATGCATGTCCCAGACATGTATTACACTGGCTTA
CGCCTCGAGGT
Found at i:15449573 original size:18 final size:18
Alignment explanation
Indices: 15449550--15449617 Score: 84
Period size: 18 Copynumber: 3.8 Consensus size: 18
15449540 CCTGGCCCAT
*
15449550 TGCAGTAACAGTAAATAA
1 TGCAGTAACAGTAAATAG
*
15449568 TGCAGTAACAGT-AACAG
1 TGCAGTAACAGTAAATAG
* * *
15449585 TGTAGTAATAGTAAATGG
1 TGCAGTAACAGTAAATAG
15449603 TGCAGTAACAGTAAA
1 TGCAGTAACAGTAAA
15449618 CAGTATGCAA
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
17 13 0.32
18 28 0.68
ACGTcount: A:0.44, C:0.10, G:0.22, T:0.24
Consensus pattern (18 bp):
TGCAGTAACAGTAAATAG
Found at i:15449592 original size:35 final size:36
Alignment explanation
Indices: 15449553--15449621 Score: 104
Period size: 35 Copynumber: 1.9 Consensus size: 36
15449543 GGCCCATTGC
15449553 AGTAACAGTAAATAATGCAGTAACAGT-AACAGTGT
1 AGTAACAGTAAATAATGCAGTAACAGTAAACAGTGT
* **
15449588 AGTAATAGTAAATGGTGCAGTAACAGTAAACAGT
1 AGTAACAGTAAATAATGCAGTAACAGTAAACAGT
15449622 ATGCAAGTCC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
35 24 0.80
36 6 0.20
ACGTcount: A:0.45, C:0.10, G:0.22, T:0.23
Consensus pattern (36 bp):
AGTAACAGTAAATAATGCAGTAACAGTAAACAGTGT
Found at i:15450081 original size:27 final size:27
Alignment explanation
Indices: 15449934--15450073 Score: 165
Period size: 27 Copynumber: 5.2 Consensus size: 27
15449924 ACATACATCA
* * *
15449934 CATAGGGGTAAAATAGTCATCTTACCAT
1 CATAAGGGCAAAATAGTCATTTTACC-T
* **
15449962 -AAAAGGGCAAACCAGTCATTTTACCT
1 CATAAGGGCAAAATAGTCATTTTACCT
* * *
15449988 CATAAGGGCAAAACAATTATTTTACCT
1 CATAAGGGCAAAATAGTCATTTTACCT
15450015 CATAAGGGCAAAATAGTCATTTTACCT
1 CATAAGGGCAAAATAGTCATTTTACCT
* *
15450042 TATAAGGGCAAAATAGTCATTTTACCC
1 CATAAGGGCAAAATAGTCATTTTACCT
15450069 CATAA
1 CATAA
15450074 ATGTAAAACA
Statistics
Matches: 95, Mismatches: 16, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
26 1 0.01
27 94 0.99
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (27 bp):
CATAAGGGCAAAATAGTCATTTTACCT
Found at i:15450082 original size:81 final size:81
Alignment explanation
Indices: 15449934--15450085 Score: 205
Period size: 81 Copynumber: 1.9 Consensus size: 81
15449924 ACATACATCA
* * * * *
15449934 CATAGGGGTAAAATAGTCATCTTACCATAAAAGGGCAAACCAGTCATTTTACCTCATAAGGGCAA
1 CATAAGGGCAAAATAGTCATCTTACCATAAAAGGGCAAAACAGTCATTTTACCCCATAAAGGCAA
15449999 AACAATTATTTTACCT
66 AACAATTATTTTACCT
* * * * * *
15450015 CATAAGGGCAAAATAGTCATTTTACCTTATAAGGGCAAAATAGTCATTTTACCCCATAAATGTAA
1 CATAAGGGCAAAATAGTCATCTTACCATAAAAGGGCAAAACAGTCATTTTACCCCATAAAGGCAA
15450080 AACAAT
66 AACAAT
15450086 AACTCCACAG
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 60 1.00
ACGTcount: A:0.40, C:0.18, G:0.14, T:0.28
Consensus pattern (81 bp):
CATAAGGGCAAAATAGTCATCTTACCATAAAAGGGCAAAACAGTCATTTTACCCCATAAAGGCAA
AACAATTATTTTACCT
Found at i:15451728 original size:40 final size:40
Alignment explanation
Indices: 15451655--15452518 Score: 1572
Period size: 40 Copynumber: 21.6 Consensus size: 40
15451645 ACCCAAGTAT
* * **
15451655 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGC
* *
15451694 CTTCGGGTCTTAGCCCGGATATAGTCAC-TAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTA-CACAAATGC
* * * *
15451734 CATCGGGACTTAGCCC-AAGTATAGCAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGA-TATAGTAACT--T-ACACAAATGC
15451777 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGC
15451817 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGC
15451857 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGC
15451897 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGC
15451937 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGC
15451977 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGC
15452017 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGC
15452057 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGC
15452097 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGC
15452137 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGC
15452177 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGC
15452217 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGC
15452257 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGC
15452297 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGC
15452337 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGC
15452377 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGC
15452417 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGC
15452457 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGC
15452497 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
15452519 CATCCGAATA
Statistics
Matches: 801, Mismatches: 16, Indels: 15
0.96 0.02 0.02
Matches are distributed among these distances:
39 12 0.01
40 753 0.94
41 1 0.00
43 34 0.04
44 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGC
Found at i:15457154 original size:47 final size:47
Alignment explanation
Indices: 15457079--15458139 Score: 1890
Period size: 47 Copynumber: 22.5 Consensus size: 47
15457069 TTCGGGACTT
* * * * * *
15457079 ATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGG-CTC
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
*
15457125 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
1 -ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
15457173 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
15457220 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
15457267 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
15457314 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
15457361 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
15457408 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
15457455 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
15457502 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
15457549 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
15457596 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
15457643 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
15457690 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
15457737 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
15457784 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
15457831 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
*
15457878 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
* * *
15457925 ATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTT
1 ATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
* *
15457974 TTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
* * *
15458021 ATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTT
1 ATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
* *
15458070 TTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
* *
15458117 ATCACATATATATACATTCACAT
1 ATCACATATATACACTTTCACAT
15458140 CACAATTATC
Statistics
Matches: 986, Mismatches: 23, Indels: 10
0.97 0.02 0.01
Matches are distributed among these distances:
47 895 0.91
48 3 0.00
49 88 0.09
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.31
Consensus pattern (47 bp):
ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
Found at i:15464864 original size:63 final size:63
Alignment explanation
Indices: 15464765--15464897 Score: 239
Period size: 63 Copynumber: 2.1 Consensus size: 63
15464755 TAAAGCATGA
15464765 CTTCTAATTATTTCTGGTTAATTTATGGTAAATTTCCAAAGTCAGAACAGGGGATCCAGTAAC
1 CTTCTAATTATTTCTGGTTAATTTATGGTAAATTTCCAAAGTCAGAACAGGGGATCCAGTAAC
* *
15464828 CTTCTAATTATTTCTGGTTAATTTATGGTAAATTTCCGAAGTCAGAGCAGGGGATCCAGTAAC
1 CTTCTAATTATTTCTGGTTAATTTATGGTAAATTTCCAAAGTCAGAACAGGGGATCCAGTAAC
15464891 CGTTCTA
1 C-TTCTA
15464898 GCCCTATTTC
Statistics
Matches: 67, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
63 62 0.93
64 5 0.07
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (63 bp):
CTTCTAATTATTTCTGGTTAATTTATGGTAAATTTCCAAAGTCAGAACAGGGGATCCAGTAAC
Found at i:15465858 original size:40 final size:40
Alignment explanation
Indices: 15465784--15466003 Score: 241
Period size: 40 Copynumber: 5.5 Consensus size: 40
15465774 AAGTATCTTG
* *
15465784 GGGATTTAG-CCGGATATAG-CAACTCGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTC
* * **
15465823 GAGTCTTAGCCCGGATATAGTCACTAGCATGAATGCCTTC
1 GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
* *
15465863 GGGACTTAGCCCAGATATAGTCACTAGCACGAATGCCTTC
1 GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
*
15465903 GGGACTTAG-CCTGAGTATAG-CAACTACTCGCACAAATGCCTTC
1 GGGACTTAGCCCGGA-TATAGTC-ACTA---GCACAAATGCCTTC
* * *
15465946 GGGACTTAGCCCGAATATAGTAACTTGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
*
15465986 GGGACTTGGCCCGGATAT
1 GGGACTTAGCCCGGATAT
15466004 CATCCGAATA
Statistics
Matches: 154, Mismatches: 18, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
39 11 0.07
40 109 0.71
41 1 0.01
43 30 0.19
44 3 0.02
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
Found at i:15472185 original size:59 final size:54
Alignment explanation
Indices: 15472081--15472213 Score: 130
Period size: 59 Copynumber: 2.4 Consensus size: 54
15472071 TAGGATCTGA
* *
15472081 ATTTAGCCTGGACTGGTAATTCAGATCTAATCTCATTTGAGTATATGTTATCGTAGGGG
1 ATTTAGCCTGGACTGGTAATTCAGATCTAATCTCATATGAGTATA--TTA-CG--GAGG
*
15472140 ATTTAGCCTGGGCTGGTAATTCCA-A-C-AATACTC-TATGAGTTTATATTACGGAGG
1 ATTTAGCCTGGACTGGTAATT-CAGATCTAAT-CTCATATGAG--TATATTACGGAGG
15472194 ATTTAGCCTGGACTGGTAAT
1 ATTTAGCCTGGACTGGTAAT
15472214 CCCGCCGTAA
Statistics
Matches: 66, Mismatches: 4, Indels: 13
0.80 0.05 0.16
Matches are distributed among these distances:
54 22 0.33
56 2 0.03
57 11 0.17
58 4 0.06
59 25 0.38
60 2 0.03
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.35
Consensus pattern (54 bp):
ATTTAGCCTGGACTGGTAATTCAGATCTAATCTCATATGAGTATATTACGGAGG
Found at i:15472210 original size:54 final size:58
Alignment explanation
Indices: 15472081--15472213 Score: 152
Period size: 54 Copynumber: 2.3 Consensus size: 58
15472071 TAGGATCTGA
* * *
15472081 ATTTAGCCTGGACTGGTAATTCAGATCTAATCTCATTTGAGTATATGTTATCGTAGGGG
1 ATTTAGCCTGGACTGGTAATTCAGATCTAATCTCATATGAGTATATATTATCG-AGAGG
* *
15472140 ATTTAGCCTGGGCTGGTAATTCCA-A-C-AATACTC-TATGAGTTTATATTA-CG-GAGG
1 ATTTAGCCTGGACTGGTAATT-CAGATCTAAT-CTCATATGAGTATATATTATCGAGAGG
15472194 ATTTAGCCTGGACTGGTAAT
1 ATTTAGCCTGGACTGGTAAT
15472214 CCCGCCGTAA
Statistics
Matches: 66, Mismatches: 6, Indels: 9
0.81 0.07 0.11
Matches are distributed among these distances:
54 22 0.33
56 2 0.03
57 15 0.23
58 4 0.06
59 21 0.32
60 2 0.03
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.35
Consensus pattern (58 bp):
ATTTAGCCTGGACTGGTAATTCAGATCTAATCTCATATGAGTATATATTATCGAGAGG
Found at i:15477436 original size:24 final size:25
Alignment explanation
Indices: 15477382--15477445 Score: 80
Period size: 24 Copynumber: 2.6 Consensus size: 25
15477372 GAAAATTTCA
15477382 AGCACTATGTGTGCG-GTTTAGTAT
1 AGCACTATGTGTGCGAGTTTAGTAT
* *
15477406 GGAACTATGTGTGCGAGCTTTA-T-T
1 AGCACTATGTGTGCGAG-TTTAGTAT
15477430 AGCACTATGTGTGCGA
1 AGCACTATGTGTGCGA
15477446 ATTCGGTTGA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
24 28 0.82
25 2 0.06
26 4 0.12
ACGTcount: A:0.22, C:0.14, G:0.30, T:0.34
Consensus pattern (25 bp):
AGCACTATGTGTGCGAGTTTAGTAT
Found at i:15479307 original size:89 final size:89
Alignment explanation
Indices: 15479151--15479333 Score: 348
Period size: 89 Copynumber: 2.1 Consensus size: 89
15479141 GACGGAGTTT
* *
15479151 CGAAAAAAGTATATTAGTCAATGGTTCATCGATCAAAAGCGTAAAGAATTTTTAGAGCTTAAACA
1 CGAACAAAGTATATTAGTCAACGGTTCATCGATCAAAAGCGTAAAGAATTTTTAGAGCTTAAACA
15479216 AGGCTGTTTGACAGTATCCGAATA
66 AGGCTGTTTGACAGTATCCGAATA
15479240 CGAACAAAGTATATTAGTCAACGGTTCATCGATCAAAAGCGTAAAGAATTTTTAGAGCTTAAACA
1 CGAACAAAGTATATTAGTCAACGGTTCATCGATCAAAAGCGTAAAGAATTTTTAGAGCTTAAACA
15479305 AGGCTGTTTGACAGTATCCGAATA
66 AGGCTGTTTGACAGTATCCGAATA
15479329 CGAAC
1 CGAAC
15479334 GTGAGTTTGT
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
89 92 1.00
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (89 bp):
CGAACAAAGTATATTAGTCAACGGTTCATCGATCAAAAGCGTAAAGAATTTTTAGAGCTTAAACA
AGGCTGTTTGACAGTATCCGAATA
Found at i:15481035 original size:118 final size:118
Alignment explanation
Indices: 15480827--15481061 Score: 452
Period size: 118 Copynumber: 2.0 Consensus size: 118
15480817 ATTGATGATT
15480827 TGTTTGATCAGTTAAAGGGAGCATCAGTATTTTCAAAGATAGATTTGAGATCGAGTTATTATCAG
1 TGTTTGATCAGTTAAAGGGAGCATCAGTATTTTCAAAGATAGATTTGAGATCGAGTTATTATCAG
*
15480892 TTGTGAGTTCGAGACTCAGACATACCCAAAACTGCTTTTAGAACGAGATACGA
66 TTGCGAGTTCGAGACTCAGACATACCCAAAACTGCTTTTAGAACGAGATACGA
*
15480945 TGTTTGATCAGTTAAAGGGAGCATCAGTATTTTCGAAGATAGATTTGAGATCGAGTTATTATCAG
1 TGTTTGATCAGTTAAAGGGAGCATCAGTATTTTCAAAGATAGATTTGAGATCGAGTTATTATCAG
15481010 TTGCGAGTTCGAGACTCAGACATACCCAAAACTGCTTTTAGAACGAGATACG
66 TTGCGAGTTCGAGACTCAGACATACCCAAAACTGCTTTTAGAACGAGATACG
15481062 GTCACTATGA
Statistics
Matches: 115, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
118 115 1.00
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (118 bp):
TGTTTGATCAGTTAAAGGGAGCATCAGTATTTTCAAAGATAGATTTGAGATCGAGTTATTATCAG
TTGCGAGTTCGAGACTCAGACATACCCAAAACTGCTTTTAGAACGAGATACGA
Found at i:15483346 original size:94 final size:94
Alignment explanation
Indices: 15483181--15483437 Score: 487
Period size: 94 Copynumber: 2.7 Consensus size: 94
15483171 CATACCGATT
15483181 TTTTATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGT
1 TTTTATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGT
* *
15483246 GTGGAATTAAATGTCACTTTGTGTGCAGA
66 GCGGAATTAAATGTCACTTTGTGTGCAAA
*
15483275 TTTTATATGCTATTTGAATTAAGTAAATTTCCTTATTATAATGAGTTAACATTGGCACTATGTGT
1 TTTTATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGT
15483340 GCGGAATTAAATGTCACTTTGTGTGCAAA
66 GCGGAATTAAATGTCACTTTGTGTGCAAA
15483369 TTTTATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGT
1 TTTTATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGT
15483434 GCGG
66 GCGG
15483438 TGGGGAGCTT
Statistics
Matches: 159, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
94 159 1.00
ACGTcount: A:0.30, C:0.10, G:0.18, T:0.42
Consensus pattern (94 bp):
TTTTATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGT
GCGGAATTAAATGTCACTTTGTGTGCAAA
Found at i:15485278 original size:94 final size:94
Alignment explanation
Indices: 15485117--15485586 Score: 904
Period size: 94 Copynumber: 5.0 Consensus size: 94
15485107 AATGTGACCG
* *
15485117 TATATGCTATTTGAATTAAGTAAGTTGCCATATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
15485182 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
15485211 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
15485276 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
15485305 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
15485370 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
15485399 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
15485464 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
15485493 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
* *
15485558 GAATTAAATGGCACTATGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
15485587 GAATGTCGAT
Statistics
Matches: 372, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 372 1.00
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.40
Consensus pattern (94 bp):
TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
GAATTAAATGTCACTTTGTGTGCAGATTT
Found at i:15485647 original size:24 final size:24
Alignment explanation
Indices: 15485615--15485678 Score: 85
Period size: 24 Copynumber: 2.7 Consensus size: 24
15485605 GAAAATTTCA
* *
15485615 GGCACTATGTGTGCG-GTTTAGTAT
1 GGCACTATGTGTGCGAGCTTAAT-T
15485639 GGCACTATGTGTGCGAGCTTAATT
1 GGCACTATGTGTGCGAGCTTAATT
*
15485663 AGCACTATGTGTGCGA
1 GGCACTATGTGTGCGA
15485679 ATTTGGTTGA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 31 0.86
25 5 0.14
ACGTcount: A:0.20, C:0.16, G:0.31, T:0.33
Consensus pattern (24 bp):
GGCACTATGTGTGCGAGCTTAATT
Found at i:15487102 original size:55 final size:55
Alignment explanation
Indices: 15487033--15487139 Score: 205
Period size: 55 Copynumber: 1.9 Consensus size: 55
15487023 TGAACCATTC
15487033 ACTAGTACATATCTCAAGCATAACAACAAGATATACCATTTGAACTAAGTAATTT
1 ACTAGTACATATCTCAAGCATAACAACAAGATATACCATTTGAACTAAGTAATTT
*
15487088 ACTAGTACATATCTCAAGCATAACAAGAAGATATACCATTTGAACTAAGTAA
1 ACTAGTACATATCTCAAGCATAACAACAAGATATACCATTTGAACTAAGTAA
15487140 CAACCATTTC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 51 1.00
ACGTcount: A:0.45, C:0.18, G:0.10, T:0.27
Consensus pattern (55 bp):
ACTAGTACATATCTCAAGCATAACAACAAGATATACCATTTGAACTAAGTAATTT
Found at i:15487362 original size:17 final size:18
Alignment explanation
Indices: 15487335--15487371 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
15487325 CCTTAAAATG
15487335 GATTTTAAAAATA-AATTA
1 GATTTTAAAAA-AGAATTA
15487353 GATTTT-AAAAAGAATTA
1 GATTTTAAAAAAGAATTA
15487370 GA
1 GA
15487372 AAAGAAAGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 1 0.06
17 11 0.61
18 6 0.33
ACGTcount: A:0.54, C:0.00, G:0.11, T:0.35
Consensus pattern (18 bp):
GATTTTAAAAAAGAATTA
Found at i:15489949 original size:126 final size:126
Alignment explanation
Indices: 15489779--15490031 Score: 443
Period size: 126 Copynumber: 2.0 Consensus size: 126
15489769 AGGGGCTAAA
*
15489779 ATACAATAAAGTGCTTTGGAAAACATACATATCTAAGATTTAAATGCCTACTTTTGTAAATCAAA
1 ATACAATAAAGTGCTTTGGAAAACATACATATCTAAAATTTAAATGCCTACTTTTGTAAATCAAA
*
15489844 GCATAATTTTTTAACACTTTTATTTTGAGATTTTTCATTCTTTCAATGTGGTCCCTAAAAC
66 GCATAATGTTTTAACACTTTTATTTTGAGATTTTTCATTCTTTCAATGTGGTCCCTAAAAC
* *
15489905 ATACAATAAAGTGCTTTGGAAAACATACATATCTAAAATTTAAATGTCTACTTTTGTAAATCAAT
1 ATACAATAAAGTGCTTTGGAAAACATACATATCTAAAATTTAAATGCCTACTTTTGTAAATCAAA
* * *
15489970 GGATAATGTTTTAATACTTTTATTTTGAGATTTTTCATTCTTTCAATGTGGTCCTTAAAAC
66 GCATAATGTTTTAACACTTTTATTTTGAGATTTTTCATTCTTTCAATGTGGTCCCTAAAAC
15490031 A
1 A
15490032 CTTGTTTTTA
Statistics
Matches: 120, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
126 120 1.00
ACGTcount: A:0.35, C:0.13, G:0.11, T:0.41
Consensus pattern (126 bp):
ATACAATAAAGTGCTTTGGAAAACATACATATCTAAAATTTAAATGCCTACTTTTGTAAATCAAA
GCATAATGTTTTAACACTTTTATTTTGAGATTTTTCATTCTTTCAATGTGGTCCCTAAAAC
Found at i:15495830 original size:36 final size:36
Alignment explanation
Indices: 15495790--15495862 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
15495780 GCATTATATA
15495790 TGATATTTATGTTATCGAATTGTTGGTTGGTAAGTT
1 TGATATTTATGTTATCGAATTGTTGGTTGGTAAGTT
* *
15495826 TGATATTTATGTTATTGAATTTTTGGTTGGTAAGTT
1 TGATATTTATGTTATCGAATTGTTGGTTGGTAAGTT
15495862 T
1 T
15495863 ACTTATTTAG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.22, C:0.01, G:0.23, T:0.53
Consensus pattern (36 bp):
TGATATTTATGTTATCGAATTGTTGGTTGGTAAGTT
Found at i:15500654 original size:20 final size:19
Alignment explanation
Indices: 15500621--15500661 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
15500611 GTCCCCTGTA
*
15500621 TTTTCAAAAATTTCCTAAG
1 TTTTCAAAAATTTCCCAAG
*
15500640 TTTTCTAAAAGTTTCCCAAG
1 TTTTC-AAAAATTTCCCAAG
15500660 TT
1 TT
15500662 ATCAGCTTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.32, C:0.17, G:0.07, T:0.44
Consensus pattern (19 bp):
TTTTCAAAAATTTCCCAAG
Found at i:15506513 original size:20 final size:20
Alignment explanation
Indices: 15506488--15506532 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
15506478 CACCAAAGAA
15506488 GTTCTGAGATGATTTCAATC
1 GTTCTGAGATGATTTCAATC
15506508 GTTCTGAGATGATTTCAATC
1 GTTCTGAGATGATTTCAATC
*
15506528 ATTCT
1 GTTCT
15506533 AGAGCCACTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.24, C:0.16, G:0.18, T:0.42
Consensus pattern (20 bp):
GTTCTGAGATGATTTCAATC
Found at i:15520345 original size:9 final size:9
Alignment explanation
Indices: 15520328--15520402 Score: 141
Period size: 9 Copynumber: 8.3 Consensus size: 9
15520318 TGGACTCCGA
15520328 ATGCCTAGT
1 ATGCCTAGT
*
15520337 ATACCTAGT
1 ATGCCTAGT
15520346 ATGCCTAGT
1 ATGCCTAGT
15520355 ATGCCTAGT
1 ATGCCTAGT
15520364 ATGCCTAGT
1 ATGCCTAGT
15520373 ATGCCTAGT
1 ATGCCTAGT
15520382 ATGCCTAGT
1 ATGCCTAGT
15520391 ATGCCTAGT
1 ATGCCTAGT
15520400 ATG
1 ATG
15520403 ACAGGATTGC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
9 64 1.00
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.33
Consensus pattern (9 bp):
ATGCCTAGT
Found at i:15527265 original size:14 final size:14
Alignment explanation
Indices: 15527246--15527275 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
15527236 TTTATCTCAT
15527246 TTGTAGGTATAAGG
1 TTGTAGGTATAAGG
15527260 TTGTAGGTATAAGG
1 TTGTAGGTATAAGG
15527274 TT
1 TT
15527276 AAGCATTGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.33, T:0.40
Consensus pattern (14 bp):
TTGTAGGTATAAGG
Found at i:15528565 original size:37 final size:37
Alignment explanation
Indices: 15528515--15528593 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
15528505 TTATTACGAA
* * *
15528515 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
15528552 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
15528589 GTCTT
1 GTCTT
15528594 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:15528790 original size:47 final size:47
Alignment explanation
Indices: 15528712--15532884 Score: 8195
Period size: 47 Copynumber: 88.7 Consensus size: 47
15528702 CCCTTCGGGA
* * * * * *
15528712 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
15528759 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15528806 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15528853 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15528900 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15528947 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15528994 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15529041 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15529088 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15529135 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15529182 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15529229 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15529276 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15529323 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15529370 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15529417 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15529464 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15529511 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15529558 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15529605 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15529652 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15529699 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15529746 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15529793 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15529840 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15529887 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15529934 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15529981 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15530028 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15530075 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15530122 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15530169 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15530216 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15530263 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15530310 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15530357 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15530404 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15530451 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15530498 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
15530545 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15530594 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15530641 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15530688 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15530735 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15530782 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15530829 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15530876 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15530923 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15530970 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15531017 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15531064 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15531111 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15531158 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15531205 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15531252 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15531299 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15531346 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15531393 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15531440 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15531487 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15531534 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15531581 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15531628 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15531675 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15531722 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15531769 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15531816 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15531863 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15531910 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15531957 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15532004 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15532051 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15532098 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15532145 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15532192 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15532239 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15532286 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15532333 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15532380 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15532427 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15532474 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15532521 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15532568 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15532615 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15532662 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15532709 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15532756 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15532803 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
15532850 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
15532885 AGAATCCTAA
Statistics
Matches: 4106, Mismatches: 17, Indels: 6
0.99 0.00 0.00
Matches are distributed among these distances:
46 1 0.00
47 4060 0.99
49 45 0.01
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:15551978 original size:30 final size:30
Alignment explanation
Indices: 15551942--15552003 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
15551932 GCTAAAAGCT
15551942 TCTAGAACTCAAGTTTTGCAACTTATTCAA
1 TCTAGAACTCAAGTTTTGCAACTTATTCAA
15551972 TCTAGAACTCAAGTTTTGCAACTTATTCAA
1 TCTAGAACTCAAGTTTTGCAACTTATTCAA
15552002 TC
1 TC
15552004 ATAAAATAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.32, C:0.21, G:0.10, T:0.37
Consensus pattern (30 bp):
TCTAGAACTCAAGTTTTGCAACTTATTCAA
Found at i:15554863 original size:13 final size:13
Alignment explanation
Indices: 15554845--15554892 Score: 53
Period size: 13 Copynumber: 3.5 Consensus size: 13
15554835 GACACACGGG
15554845 CGTGTGTCTAGGC
1 CGTGTGTCTAGGC
*
15554858 CGTGTGTGACACAGG-
1 CGTGTGT--C-TAGGC
15554873 CGTGTGTCTAGGC
1 CGTGTGTCTAGGC
15554886 CGTGTGT
1 CGTGTGT
15554893 GACACACGGC
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
12 3 0.10
13 15 0.52
15 8 0.28
16 3 0.10
ACGTcount: A:0.10, C:0.21, G:0.40, T:0.29
Consensus pattern (13 bp):
CGTGTGTCTAGGC
Found at i:15554877 original size:28 final size:28
Alignment explanation
Indices: 15554838--15554898 Score: 113
Period size: 28 Copynumber: 2.2 Consensus size: 28
15554828 ATGGTTAGAC
*
15554838 ACACGGGCGTGTGTCTAGGCCGTGTGTG
1 ACACAGGCGTGTGTCTAGGCCGTGTGTG
15554866 ACACAGGCGTGTGTCTAGGCCGTGTGTG
1 ACACAGGCGTGTGTCTAGGCCGTGTGTG
15554894 ACACA
1 ACACA
15554899 CGGCTCCCTC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.16, C:0.23, G:0.38, T:0.23
Consensus pattern (28 bp):
ACACAGGCGTGTGTCTAGGCCGTGTGTG
Found at i:15558826 original size:21 final size:21
Alignment explanation
Indices: 15558802--15558846 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
15558792 TGAGATAAGT
15558802 AAATTTTAGTGAAGAAAGGTC
1 AAATTTTAGTGAAGAAAGGTC
15558823 AAATTTTAGTGAAGAAAGGTC
1 AAATTTTAGTGAAGAAAGGTC
15558844 AAA
1 AAA
15558847 GCTGTTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.47, C:0.04, G:0.22, T:0.27
Consensus pattern (21 bp):
AAATTTTAGTGAAGAAAGGTC
Found at i:15563424 original size:100 final size:101
Alignment explanation
Indices: 15563289--15563481 Score: 280
Period size: 100 Copynumber: 1.9 Consensus size: 101
15563279 TTAATAATGT
* * * *
15563289 CATAACTCAGTTATGGTCTTATCATCAGAACGCCATAGCATAGTTATGGTCTTACATGTATACAC
1 CATAACTCAGTTATGGTCTTATCATCAAAACGCCATAGCACAGCTATGGTCTTACATATATACAC
15563354 TACCATGGTCAAACCATGGTATTACATCCATAGTTC
66 TACCATGGTCAAACCATGGTATTACATCCATAGTTC
* * *
15563390 CATAACT-AGTTATGGTTTTATCATCAAAATGCCATAGCCCAGCTATGGTCTTACATATATACAC
1 CATAACTCAGTTATGGTCTTATCATCAAAACGCCATAGCACAGCTATGGTCTTACATATATACAC
* ** *
15563454 TGCCATGGTCCCACCATGGTCTTACATC
66 TACCATGGTCAAACCATGGTATTACATC
15563482 TAAATCATTG
Statistics
Matches: 81, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
100 74 0.91
101 7 0.09
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.32
Consensus pattern (101 bp):
CATAACTCAGTTATGGTCTTATCATCAAAACGCCATAGCACAGCTATGGTCTTACATATATACAC
TACCATGGTCAAACCATGGTATTACATCCATAGTTC
Found at i:15563459 original size:35 final size:35
Alignment explanation
Indices: 15563419--15563499 Score: 92
Period size: 35 Copynumber: 2.3 Consensus size: 35
15563409 ATCATCAAAA
* *
15563419 TGCCATAGCCCAGCTATGGTCTTACATATATA-CAC
1 TGCCATAGCCCA-CCATGGTCTTACATATAAATCAC
* * *
15563454 TGCCATGGTCCCACCATGGTCTTACATCTAAATCAT
1 TGCCATAG-CCCACCATGGTCTTACATATAAATCAC
15563490 TGCCATAGCC
1 TGCCATAGCC
15563500 TCACTACAGT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
35 25 0.66
36 13 0.34
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.28
Consensus pattern (35 bp):
TGCCATAGCCCACCATGGTCTTACATATAAATCAC
Found at i:15571575 original size:25 final size:24
Alignment explanation
Indices: 15571538--15571610 Score: 83
Period size: 25 Copynumber: 2.9 Consensus size: 24
15571528 CATGTAAGAG
15571538 AATTCTCTAGAAAGCCTTTGTGGCA
1 AATTCTCT-GAAAGCCTTTGTGGCA
* *
15571563 AATTCTCTCGAAAGCCTTTATGGCT
1 AATTCTCT-GAAAGCCTTTGTGGCA
* *
15571588 AATACTCTGTAAGGCCTTTGTGG
1 AATTCTCTG-AAAGCCTTTGTGG
15571611 TGAACTCTCT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
24 1 0.02
25 40 0.98
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (24 bp):
AATTCTCTGAAAGCCTTTGTGGCA
Found at i:15573760 original size:40 final size:40
Alignment explanation
Indices: 15573642--15573826 Score: 223
Period size: 40 Copynumber: 4.7 Consensus size: 40
15573632 TTCTAGCACC
** * * * *
15573642 AGCCTGCGGGAATTTAAACCCGG-TATA-ATACCAGCTCGT
1 AGCCTGCGGGTCTTTAAGCCCGGATA-ACATTCCAGCACGA
* *
15573681 AGCCTGCGGGTCTCT-AGCCTGGATAACATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCACGA
* * *
15573720 AGCCTGCGGGTTTTTAAGCCCGGATAACATTCTAGGACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCACGA
*
15573760 AGCCTGTGGGTCTTTAAGCCCGGATAACATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCACGA
*
15573800 AGCCTGTGGGTCTTTAAGCCCGGATAA
1 AGCCTGCGGGTCTTTAAGCCCGGATAA
15573827 TACCTCAAGT
Statistics
Matches: 126, Mismatches: 17, Indels: 5
0.85 0.11 0.03
Matches are distributed among these distances:
38 6 0.05
39 36 0.29
40 84 0.67
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.23
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCACGA
Found at i:15594193 original size:40 final size:40
Alignment explanation
Indices: 15594127--15594232 Score: 151
Period size: 40 Copynumber: 2.7 Consensus size: 40
15594117 ACCAGCTCGT
* * *
15594127 AGCCTGCGGGTCTCT-AGCCCGGATAACATTCCAGCACGA
1 AGCCTGCAGGTCTTTAAGCCCGGATAACATTCCAACACGA
* *
15594166 AGCCTGCTGGTTTTTAAGCCCGGATAACATTCCAACACGA
1 AGCCTGCAGGTCTTTAAGCCCGGATAACATTCCAACACGA
*
15594206 AGCCTGCAGGTCTTTAAGCCTGGATAA
1 AGCCTGCAGGTCTTTAAGCCCGGATAA
15594233 AACCTCAAGT
Statistics
Matches: 59, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
39 12 0.20
40 47 0.80
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
AGCCTGCAGGTCTTTAAGCCCGGATAACATTCCAACACGA
Found at i:15600163 original size:22 final size:23
Alignment explanation
Indices: 15600124--15600166 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
15600114 GAGATCCTAC
*
15600124 CCATCCATCCTCTACACTCCACT
1 CCATCCAACCTCTACACTCCACT
15600147 CCATCCAACC-CTACACTCCA
1 CCATCCAACCTCTACACTCCA
15600167 TGTAGGGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.26, C:0.53, G:0.00, T:0.21
Consensus pattern (23 bp):
CCATCCAACCTCTACACTCCACT
Found at i:15602554 original size:49 final size:47
Alignment explanation
Indices: 15602345--15602656 Score: 180
Period size: 49 Copynumber: 6.6 Consensus size: 47
15602335 TATGTGTGCT
* * * * *
15602345 AGTGTAAGACATGTCTGGGACAT-GCATCGACATTGA-GATGAGACCC
1 AGTGTAAGACCTGTCTGAGACATGGCATCGAC-CTGATAATGAGAGCC
* * * *
15602391 AGTGTAAGACATGTCTCAGACAT-GCATCGGCCTCAAGAT-ATGCA-AGCT
1 AGTGTAAGACCTGTCTGAGACATGGCATCGACCT---GATAATG-AGAGCC
* * * * *
15602439 AGTGTAAGACCTGT-TTAGGACATGGCATCGGCTTGAT-AT--GTGTC
1 AGTGTAAGACCTGTCTGA-GACATGGCATCGACCTGATAATGAGAGCC
15602483 AGTGTAAGACCTGTCT-AGGACATGGCATCGACACTGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGA-GACATGGCATCGAC-CTGATA-ATGAGAGCC
** * * * **
15602532 AGTGTAAGACCCATCTGAGACATGGCATTGGCCTTGATATATGAAAGTT
1 AGTGTAAGACCTGTCTGAGACATGGCATCGACC-TGATA-ATGAGAGCC
* * * *
15602581 AGTATAAGACCTGTCTGGGACATGGCATCGACTTAGAT-ATGTGAGCC
1 AGTGTAAGACCTGTCTGAGACATGGCATCGACCT-GATAATGAGAGCC
*
15602628 AGTGTAAGACCATGTTTG-GAACATGGCAT
1 AGTGTAAGACC-TGTCTGAG-ACATGGCAT
15602657 TGGCATCGTA
Statistics
Matches: 210, Mismatches: 37, Indels: 36
0.74 0.13 0.13
Matches are distributed among these distances:
44 30 0.14
45 6 0.03
46 33 0.16
47 20 0.10
48 41 0.20
49 79 0.38
50 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCTGTCTGAGACATGGCATCGACCTGATAATGAGAGCC
Found at i:15602604 original size:142 final size:139
Alignment explanation
Indices: 15602332--15602656 Score: 366
Period size: 142 Copynumber: 2.3 Consensus size: 139
15602322 TAACATTTGG
* * *
15602332 TGATATGTGTGCTAGTGTAAGACATGTCTGGGACAT-GCATCGACATTGAGATGAGACCCAGTGT
1 TGATATGTGT-C-AGTGTAAGACCTGTCTAGGACATGGCATCGACACTGAGATGAGACCCAGTGT
** * * *
15602396 AAGACATGTCTCAGACATGCATCGGCCTCAAGATATGCAAGCTAGTGTAAGACCTGTTTAGGACA
64 AAGACACATCTCAGACATGCATCGGCCTCAAGATATGAAAGCTAGTATAAGACCTGTCTAGGACA
*
15602461 TGGCATCGGCT
129 TGGCATCGACT
*
15602472 TGATATGTGTCAGTGTAAGACCTGTCTAGGACATGGCATCGACACTGATAGATGAGAGCCAGTGT
1 TGATATGTGTCAGTGTAAGACCTGTCTAGGACATGGCATCGACACTG--AGATGAGACCCAGTGT
* * * ** * * *
15602537 AAGACCCATCTGAGACATGGCATTGGCCTTGATATATGAAAGTTAGTATAAGACCTGTCTGGGAC
64 AAGACACATCTCAGACAT-GCATCGGCCTCAAGATATGAAAGCTAGTATAAGACCTGTCTAGGAC
15602602 ATGGCATCGACT
128 ATGGCATCGACT
* *
15602614 TAGATATGTGAGCCAGTGTAAGACCATGT-TTGGAACATGGCAT
1 T-GATATGT--GTCAGTGTAAGACC-TGTCTAGG-ACATGGCAT
15602657 TGGCATCGTA
Statistics
Matches: 156, Mismatches: 20, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
138 21 0.13
139 12 0.08
140 10 0.06
141 29 0.19
142 49 0.31
143 7 0.04
145 16 0.10
146 12 0.08
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (139 bp):
TGATATGTGTCAGTGTAAGACCTGTCTAGGACATGGCATCGACACTGAGATGAGACCCAGTGTAA
GACACATCTCAGACATGCATCGGCCTCAAGATATGAAAGCTAGTATAAGACCTGTCTAGGACATG
GCATCGACT
Found at i:15604731 original size:75 final size:75
Alignment explanation
Indices: 15604608--15604757 Score: 275
Period size: 75 Copynumber: 2.0 Consensus size: 75
15604598 TAAATTTGTT
*
15604608 TGAATTAGCTCAAGAGCATAGAGGGGCAAACTCGGATAGGGGAAAAGAGAAAGTAATCGAATAGC
1 TGAATTAGCTCAAGAGCATAGAGGGGCAAAATCGGATAGGGGAAAAGAGAAAGTAATCGAATAGC
15604673 CGTTGTAATC
66 CGTTGTAATC
15604683 TGAATTAGCTCAAGAGCATAGAGGGGCAAAAT-GAGATAGGGGAAAAGAGAAAGTAATCGAATAG
1 TGAATTAGCTCAAGAGCATAGAGGGGCAAAATCG-GATAGGGGAAAAGAGAAAGTAATCGAATAG
15604747 CCGTTGTAATC
65 CCGTTGTAATC
15604758 GTTCGACGAT
Statistics
Matches: 73, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
74 1 0.01
75 72 0.99
ACGTcount: A:0.40, C:0.12, G:0.29, T:0.19
Consensus pattern (75 bp):
TGAATTAGCTCAAGAGCATAGAGGGGCAAAATCGGATAGGGGAAAAGAGAAAGTAATCGAATAGC
CGTTGTAATC
Found at i:15605157 original size:38 final size:38
Alignment explanation
Indices: 15605113--15605252 Score: 190
Period size: 38 Copynumber: 3.7 Consensus size: 38
15605103 GCTTAAAGGT
*
15605113 CTGCAGGCTTCATGCTAGTATTATATCTGGGTTAAATC
1 CTGCAGGCTTCATGCTAGTATTATATCCGGGTTAAATC
* * *
15605151 CCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATC
1 CTGCAGGCTTCATGCTAGTATTATATCCGGGTTAAATC
* **
15605189 CTGCAGGTTTTGTGCTAGTATTATATCCGGGTTAAATC
1 CTGCAGGCTTCATGCTAGTATTATATCCGGGTTAAATC
* * *
15605227 CTGCATGCTTAATGCTGGTATTATAT
1 CTGCAGGCTTCATGCTAGTATTATAT
15605253 TCGAGCTTAA
Statistics
Matches: 89, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 89 1.00
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.37
Consensus pattern (38 bp):
CTGCAGGCTTCATGCTAGTATTATATCCGGGTTAAATC
Found at i:15605209 original size:76 final size:78
Alignment explanation
Indices: 15605125--15605282 Score: 230
Period size: 76 Copynumber: 2.1 Consensus size: 78
15605115 GCAGGCTTCA
* ** *
15605125 TGCTAGTATTATATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCG-GGTTAAA-T
1 TGCTAGTATTATATCCGGGTTAAATCCCGCAGGCTTAATGCTGGTATTATATCCGAGCTTAAAGT
*
15605188 CCTGCAGGTTTTG
66 CCCGCAGGTTTTG
* * *
15605201 TGCTAGTATTATATCCGGGTTAAATCCTGCATGCTTAATGCTGGTATTATATTCGAGCTTAAAGT
1 TGCTAGTATTATATCCGGGTTAAATCCCGCAGGCTTAATGCTGGTATTATATCCGAGCTTAAAGT
15605266 CCCGCAGGTTTTG
66 CCCGCAGGTTTTG
15605279 TGCT
1 TGCT
15605283 GGTGACTGGA
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
76 49 0.68
77 6 0.08
78 17 0.24
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.37
Consensus pattern (78 bp):
TGCTAGTATTATATCCGGGTTAAATCCCGCAGGCTTAATGCTGGTATTATATCCGAGCTTAAAGT
CCCGCAGGTTTTG
Found at i:15611636 original size:14 final size:14
Alignment explanation
Indices: 15611617--15611644 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
15611607 GTCCGCAGGC
15611617 TTCGTGCTGGTATT
1 TTCGTGCTGGTATT
15611631 TTCGTGCTGGTATT
1 TTCGTGCTGGTATT
15611645 ATATCCAGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.07, C:0.14, G:0.29, T:0.50
Consensus pattern (14 bp):
TTCGTGCTGGTATT
Found at i:15611685 original size:38 final size:38
Alignment explanation
Indices: 15611634--15611757 Score: 158
Period size: 38 Copynumber: 3.2 Consensus size: 38
15611624 TGGTATTTTC
* *
15611634 GTGCTGGTATTATATCCAGGTTAAATCCTGCAGGCTTT
1 GTGCTAGTATTATATCCAGGTTAAATCCCGCAGGCTTT
* *
15611672 GTGCTAGTATTATATCCGGGTTAAATCCCGCAGGCTTA
1 GTGCTAGTATTATATCCAGGTTAAATCCCGCAGGCTTT
* * * *
15611710 GTGCTGGTATTATATTCGAGCTTAAAGTCCCGCAGGTTTT
1 GTGCTAGTATTATA-TCCAGGTTAAA-TCCCGCAGGCTTT
15611750 GTGCTAGT
1 GTGCTAGT
15611758 GACTGGATTC
Statistics
Matches: 73, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
38 47 0.64
39 8 0.11
40 18 0.25
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (38 bp):
GTGCTAGTATTATATCCAGGTTAAATCCCGCAGGCTTT
Found at i:15616855 original size:21 final size:21
Alignment explanation
Indices: 15616831--15616886 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
15616821 AAAATAGGGC
15616831 ACACGCCCGTGTGGAAGGGTA
1 ACACGCCCGTGTGGAAGGGTA
*
15616852 ACACGCCCGTGTAGAAGGGTA
1 ACACGCCCGTGTGGAAGGGTA
* *
15616873 ACACGTCCGCGTGG
1 ACACGCCCGTGTGG
15616887 TCTTTATGAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.23, C:0.27, G:0.36, T:0.14
Consensus pattern (21 bp):
ACACGCCCGTGTGGAAGGGTA
Found at i:15618164 original size:49 final size:50
Alignment explanation
Indices: 15618064--15618173 Score: 152
Period size: 49 Copynumber: 2.2 Consensus size: 50
15618054 AGATGCTGAC
* * *
15618064 GCCATGTCCCAGACATGGTCTTACACTGGCTTTCATATAGCGAGGTTGAT
1 GCCATGTCCCAGACATGGTCTTACAATGGCTCTCATATAGCGAGGTCGAT
* *
15618114 GCCATGTCCCAGACA-GGTCTTACAATGGCTCTCATCTATC-AGTGTCGAT
1 GCCATGTCCCAGACATGGTCTTACAATGGCTCTCATATAGCGAG-GTCGAT
15618163 GCCATGTCCCA
1 GCCATGTCCCA
15618174 AAAAAGTGTT
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
48 2 0.04
49 37 0.69
50 15 0.28
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACAATGGCTCTCATATAGCGAGGTCGAT
Found at i:15618317 original size:46 final size:46
Alignment explanation
Indices: 15618209--15618375 Score: 151
Period size: 46 Copynumber: 3.6 Consensus size: 46
15618199 AAGCTGACGA
* * * * *
15618209 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCGCGA-GGTCGATG
1 CATGTCCCAGACATGTCTTACACTAGC-TCT-CAT-GCTATGGCCGATG
*
15618257 CATGTCCCAGACATGTCTTACACTAGCTCTCGT-CTAAAT-GCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATGCT--ATGGCCGATG
* * * * * **
15618303 CATGTCCCAAACATGTCTCATACTGGCTCTCATGCTCTGGTTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATGCTATGGCCGATG
15618349 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
15618376 GCACATATCA
Statistics
Matches: 96, Mismatches: 18, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 64 0.67
47 4 0.04
48 26 0.27
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATGCTATGGCCGATG
Found at i:15625689 original size:46 final size:47
Alignment explanation
Indices: 15625583--15625709 Score: 220
Period size: 46 Copynumber: 2.7 Consensus size: 47
15625573 GTGCTAATAA
15625583 TACCTTGATTTGGCTACGGGCCATGATATAGGTATTTTGAGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGATATAGGTATTTTGAGAGGAGT
* *
15625630 TACCTTAATTTGGCTACAGGCCATGATATAGGTATTTT-AGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGATATAGGTATTTTGAGAGGAGT
*
15625676 TACCTTGATTTGGCTACGGGCCATGGTATAGGTA
1 TACCTTGATTTGGCTACGGGCCATGATATAGGTA
15625710 ATCCGGGATA
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
46 39 0.52
47 36 0.48
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGATATAGGTATTTTGAGAGGAGT
Found at i:15628453 original size:40 final size:40
Alignment explanation
Indices: 15628398--15628474 Score: 127
Period size: 40 Copynumber: 1.9 Consensus size: 40
15628388 CACCCCCTCC
15628398 AGGCTTTTAGCAACCACCATACCAGCAAGAGAAAAACTCT
1 AGGCTTTTAGCAACCACCATACCAGCAAGAGAAAAACTCT
* * *
15628438 AGGCTTTTAGCAACCACCATACTAGTAGGAGAAAAAC
1 AGGCTTTTAGCAACCACCATACCAGCAAGAGAAAAAC
15628475 CTGAACCTTG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.40, C:0.25, G:0.17, T:0.18
Consensus pattern (40 bp):
AGGCTTTTAGCAACCACCATACCAGCAAGAGAAAAACTCT
Found at i:15634547 original size:43 final size:41
Alignment explanation
Indices: 15634462--15634581 Score: 100
Period size: 43 Copynumber: 2.9 Consensus size: 41
15634452 GTCTGAGACA
* *
15634462 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATT
1 TCGTATAAGACCATGTCTGGGACACAGGCCTCGATT-AGATT
* *
15634504 TATGTATAAGACCATGTCTGGGACATC-GGCTTCGTACTT-GATT
1 T-CGTATAAGACCATGTCTGGGACA-CAGGCCTCG-A-TTAGATT
* * * * *
15634547 TCGTGTAAGACCCTATCTGGGACAGAGGCATCGAT
1 TCGTATAAGACCATGTCTGGGACACAGGCCTCGAT
15634582 ATTAAATTAC
Statistics
Matches: 63, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
40 1 0.02
41 1 0.02
42 26 0.41
43 31 0.49
44 2 0.03
45 2 0.03
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (41 bp):
TCGTATAAGACCATGTCTGGGACACAGGCCTCGATTAGATT
Found at i:15636654 original size:51 final size:51
Alignment explanation
Indices: 15636555--15636687 Score: 149
Period size: 51 Copynumber: 2.6 Consensus size: 51
15636545 CCATCAAATC
* * *
15636555 TCTAAGAATATAATATCATATCTTCTAAGATTACATATCTTAGATAAGATA
1 TCTAAGATTATAATATCATATCTTATAAGATTACATATCATAGATAAGATA
* ** * * * ** *
15636606 TGTAATCTTATAAAATAATATCTTATAAGATTCCATATCATATCTAAGATC
1 TCTAAGATTATAATATCATATCTTATAAGATTACATATCATAGATAAGATA
*
15636657 TCTAAGATTATAATATCATATCTTTTAAGAT
1 TCTAAGATTATAATATCATATCTTATAAGAT
15636688 CATGTTTCCA
Statistics
Matches: 64, Mismatches: 18, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
51 64 1.00
ACGTcount: A:0.41, C:0.12, G:0.07, T:0.40
Consensus pattern (51 bp):
TCTAAGATTATAATATCATATCTTATAAGATTACATATCATAGATAAGATA
Found at i:15641923 original size:35 final size:34
Alignment explanation
Indices: 15641876--15642079 Score: 201
Period size: 35 Copynumber: 5.8 Consensus size: 34
15641866 TCATATGGCT
* *
15641876 GAATATATAAGTTCAATATATCATCACATGTAACC
1 GAATATACAAGTTCAATATAAC-TCACATGTAACC
* * * * * * *
15641911 TAATGTTCAAGTTCAATAAAACATCTCATATGACC
1 GAATATACAAGTTCAATATAAC-TCACATGTAACC
* * **
15641946 AAATATACAAATTCAATATAATCTCATGTGTAACC
1 GAATATACAAGTTCAATATAA-CTCACATGTAACC
*
15641981 GAATATACAAGTTCAATATAAGCTCACATGTAATC
1 GAATATACAAGTTCAATATAA-CTCACATGTAACC
* * *
15642016 GAATAAACAAGTTCAATATAACCTCACATGCAGCC
1 GAATATACAAGTTCAATATAA-CTCACATGTAACC
15642051 GAATATACAAGTTCAATATAACCTCACAT
1 GAATATACAAGTTCAATATAA-CTCACAT
15642080 ATACTTACCT
Statistics
Matches: 137, Mismatches: 31, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
35 136 0.99
36 1 0.01
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.28
Consensus pattern (34 bp):
GAATATACAAGTTCAATATAACTCACATGTAACC
Found at i:15641997 original size:105 final size:105
Alignment explanation
Indices: 15641876--15642076 Score: 246
Period size: 105 Copynumber: 1.9 Consensus size: 105
15641866 TCATATGGCT
* * * *** *
15641876 GAATATATAAGTTCAATAT-ATCATCACATGTAACCTAATGTTCAAGTTCAATAAAACATCTCAT
1 GAATATACAAGTTCAATATAAGC-TCACATGTAACCGAATAAACAAGTTCAATAAAAC--CTCAC
*
15641940 ATG-A-CCAAATATACAAATTCAATATAATCTCATGTGTAACC
63 ATGCAGCCAAATATACAAATTCAATATAACCTCATGTGTAACC
* *
15641981 GAATATACAAGTTCAATATAAGCTCACATGTAATCGAATAAACAAGTTCAATATAACCTCACATG
1 GAATATACAAGTTCAATATAAGCTCACATGTAACCGAATAAACAAGTTCAATAAAACCTCACATG
* *
15642046 CAGCCGAATATACAAGTTCAATATAACCTCA
66 CAGCCAAATATACAAATTCAATATAACCTCA
15642077 CATATACTTA
Statistics
Matches: 81, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
103 7 0.09
104 1 0.01
105 71 0.88
106 2 0.02
ACGTcount: A:0.43, C:0.19, G:0.09, T:0.28
Consensus pattern (105 bp):
GAATATACAAGTTCAATATAAGCTCACATGTAACCGAATAAACAAGTTCAATAAAACCTCACATG
CAGCCAAATATACAAATTCAATATAACCTCATGTGTAACC
Found at i:15646450 original size:35 final size:35
Alignment explanation
Indices: 15646410--15646479 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
15646400 GTGCGAGTAA
15646410 GACCATGGCATCGTGATATAATTCTGATATGTGTT
1 GACCATGGCATCGTGATATAATTCTGATATGTGTT
* *
15646445 GACCATGGCATCGTTATATGATTCTGATATGTGTT
1 GACCATGGCATCGTGATATAATTCTGATATGTGTT
15646480 TACAAGTAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.24, C:0.14, G:0.23, T:0.39
Consensus pattern (35 bp):
GACCATGGCATCGTGATATAATTCTGATATGTGTT
Found at i:15652897 original size:25 final size:25
Alignment explanation
Indices: 15652860--15652909 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
15652850 AATCTAAATC
*
15652860 ACTCTTTCTGACTGACCGTCGGTTT
1 ACTCTTTCCGACTGACCGTCGGTTT
*
15652885 ACTCTTTCCGACTGACCGTTGGTTT
1 ACTCTTTCCGACTGACCGTCGGTTT
15652910 GCTAGTGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.12, C:0.28, G:0.20, T:0.40
Consensus pattern (25 bp):
ACTCTTTCCGACTGACCGTCGGTTT
Found at i:15660324 original size:26 final size:26
Alignment explanation
Indices: 15660297--15660554 Score: 141
Period size: 26 Copynumber: 10.0 Consensus size: 26
15660287 TCAACCTTAT
*
15660297 AGACTTCCCAATTAGATTGTCCTAAT
1 AGACTTCCCAATTAGATTGTCCTAAC
* **
15660323 AGACTTCCCAAATAGATTGTCCGGAC
1 AGACTTCCCAATTAGATTGTCCTAAC
* **
15660349 GGACTTCCTC-ATTAGATTGTCCTGGC
1 AGACTTCC-CAATTAGATTGTCCTAAC
* *
15660375 AGACTTTCCAATTAGATTGTCCTGAC
1 AGACTTCCCAATTAGATTGTCCTAAC
* ** * ***
15660401 AGAC-T-CCACATTATATAATCTTTGT
1 AGACTTCCCA-ATTAGATTGTCCTAAC
* * * *
15660426 AGACTTCTCAATTGGATTGTCTTGAC
1 AGACTTCCCAATTAGATTGTCCTAAC
* ** *
15660452 AAGA-GT-CCACATTAGATCATCCTAGC
1 -AGACTTCCCA-ATTAGATTGTCCTAAC
* *
15660478 AGACTTCCTAATTAGATTGTCCTAAT
1 AGACTTCCCAATTAGATTGTCCTAAC
* * **
15660504 GGGCTT-CCACATTAGATTGTCCCGAC
1 AGACTTCCCA-ATTAGATTGTCCTAAC
* *
15660530 GGACTTTCCAATTAGATTGTCCTAA
1 AGACTTCCCAATTAGATTGTCCTAA
15660555 TGGACTTTCA
Statistics
Matches: 172, Mismatches: 49, Indels: 22
0.71 0.20 0.09
Matches are distributed among these distances:
24 3 0.02
25 22 0.13
26 136 0.79
27 11 0.06
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.33
Consensus pattern (26 bp):
AGACTTCCCAATTAGATTGTCCTAAC
Found at i:15660484 original size:52 final size:51
Alignment explanation
Indices: 15660323--15660500 Score: 162
Period size: 52 Copynumber: 3.5 Consensus size: 51
15660313 TTGTCCTAAT
* * * * * ** *
15660323 AGACTTCCCAAATAGATTGTCCGGACGGACTTCCTCATTAGATTGTCCTGGC
1 AGACTTCTCAATTAGATTGTCCTGACAGAC-TCCACATTAGATAATCCTAGC
* * * *
15660375 AGACTT-TCCAATTAGATTGTCCTGACAGACTCCACATTATATAATCTTTGT
1 AGACTTCT-CAATTAGATTGTCCTGACAGACTCCACATTAGATAATCCTAGC
* * * *
15660426 AGACTTCTCAATTGGATTGTCTTGACAAGAGTCCACATTAGATCATCCTAGC
1 AGACTTCTCAATTAGATTGTCCTGAC-AGACTCCACATTAGATAATCCTAGC
15660478 AGACTTC-CTAATTAGATTGTCCT
1 AGACTTCTC-AATTAGATTGTCCT
15660501 AATGGGCTTC
Statistics
Matches: 101, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
51 37 0.37
52 64 0.63
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.33
Consensus pattern (51 bp):
AGACTTCTCAATTAGATTGTCCTGACAGACTCCACATTAGATAATCCTAGC
Found at i:15660513 original size:52 final size:52
Alignment explanation
Indices: 15660457--15660568 Score: 138
Period size: 52 Copynumber: 2.2 Consensus size: 52
15660447 TTGACAAGAG
*
15660457 TCCACATTAGATCATCCTAG-CAGAC-TTCCTAATTAGATTGTCCTAATGGGCT
1 TCCACATTAGATCATCC-AGACAGACTTTCC-AATTAGATTGTCCTAATGGACT
** * *
15660509 TCCACATTAGATTGTCCCGACGGACTTTCCAATTAGATTGTCCTAATGGACT
1 TCCACATTAGATCATCCAGACAGACTTTCCAATTAGATTGTCCTAATGGACT
*
15660561 TTCACATT
1 TCCACATT
15660569 TACGGTAATG
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
51 1 0.02
52 47 0.90
53 4 0.08
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.34
Consensus pattern (52 bp):
TCCACATTAGATCATCCAGACAGACTTTCCAATTAGATTGTCCTAATGGACT
Found at i:15660559 original size:26 final size:26
Alignment explanation
Indices: 15660482--15660563 Score: 103
Period size: 26 Copynumber: 3.1 Consensus size: 26
15660472 CCTAGCAGAC
*
15660482 TTCCTAATTAGATTGTCCTAATGGGC-
1 TTCC-AATTAGATTGTCCTAATGGACT
** *
15660508 TTCCACATTAGATTGTCCCGACGGACT
1 TTCCA-ATTAGATTGTCCTAATGGACT
15660535 TTCCAATTAGATTGTCCTAATGGACT
1 TTCCAATTAGATTGTCCTAATGGACT
15660561 TTC
1 TTC
15660564 ACATTTACGG
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
25 1 0.02
26 41 0.87
27 5 0.11
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (26 bp):
TTCCAATTAGATTGTCCTAATGGACT
Found at i:15664145 original size:42 final size:42
Alignment explanation
Indices: 15663975--15664146 Score: 130
Period size: 42 Copynumber: 4.0 Consensus size: 42
15663965 GATAAGATAC
15663975 CGTATAAGACCATATCTGGGATATGGCATCAGCATCA-GTATGAGTTAT
1 CGTATAAGACCATATCTGGGATATGGCATC-G-AT-ATG-A-GA-TT-T
* * * ** * **
15664023 CATGTGAGACCATATCTGGGATACAGCATTGATACAAGATTT
1 CGTATAAGACCATATCTGGGATATGGCATCGATATGAGATTT
* ** * * * *
15664065 CGTGTAAGACCACGTCTGGAACATGGCATCGAAATGAGAATT
1 CGTATAAGACCATATCTGGGATATGGCATCGATATGAGATTT
*
15664107 CGTATAAGACCATATCTGGGATATGGCATCGATGTGAGAT
1 CGTATAAGACCATATCTGGGATATGGCATCGATATGAGAT
15664147 CCCATGTAAG
Statistics
Matches: 95, Mismatches: 28, Indels: 8
0.73 0.21 0.06
Matches are distributed among these distances:
42 62 0.65
43 2 0.02
44 2 0.02
45 2 0.02
46 2 0.02
47 1 0.01
48 24 0.25
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (42 bp):
CGTATAAGACCATATCTGGGATATGGCATCGATATGAGATTT
Found at i:15664348 original size:41 final size:41
Alignment explanation
Indices: 15664303--15664380 Score: 147
Period size: 41 Copynumber: 1.9 Consensus size: 41
15664293 GGATGTACGC
15664303 CAAGCTTATAGTTACTGAGATTATGAAAAAATAAGGCACGG
1 CAAGCTTATAGTTACTGAGATTATGAAAAAATAAGGCACGG
*
15664344 CAAGCTTATAGTTACTGAGATTATGAAACAATAAGGC
1 CAAGCTTATAGTTACTGAGATTATGAAAAAATAAGGC
15664381 TTCGGTAAGA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.41, C:0.13, G:0.21, T:0.26
Consensus pattern (41 bp):
CAAGCTTATAGTTACTGAGATTATGAAAAAATAAGGCACGG
Found at i:15666684 original size:20 final size:20
Alignment explanation
Indices: 15666646--15666684 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
15666636 TTCCAGATTC
** *
15666646 AGATTCAGATATTAGATATT
1 AGATTCAGATAGCAAATATT
15666666 AGATTCAGATAGCAAATAT
1 AGATTCAGATAGCAAATAT
15666685 GCCCAAAATC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.44, C:0.08, G:0.15, T:0.33
Consensus pattern (20 bp):
AGATTCAGATAGCAAATATT
Found at i:15673666 original size:3 final size:3
Alignment explanation
Indices: 15673645--15673697 Score: 83
Period size: 3 Copynumber: 18.0 Consensus size: 3
15673635 TTATCTCAAT
15673645 TAA TAGA TAA -AA T-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
15673689 TAA TAA TAA
1 TAA TAA TAA
15673698 GTAAATACCT
Statistics
Matches: 47, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
2 4 0.09
3 40 0.85
4 3 0.06
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:15689198 original size:20 final size:20
Alignment explanation
Indices: 15689163--15689219 Score: 82
Period size: 20 Copynumber: 2.9 Consensus size: 20
15689153 GAATAGGGGC
*
15689163 ACATGCCTGT-TGGCCT-GA
1 ACATGCCCGTGTGGCCTGGA
15689181 GACATGCCCGTGTGGCCTGGA
1 -ACATGCCCGTGTGGCCTGGA
15689202 ACATGCCCGTGTGGCCTG
1 ACATGCCCGTGTGGCCTG
15689220 TCGTGGACAA
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
19 9 0.26
20 24 0.69
21 2 0.06
ACGTcount: A:0.14, C:0.30, G:0.33, T:0.23
Consensus pattern (20 bp):
ACATGCCCGTGTGGCCTGGA
Found at i:15690604 original size:47 final size:47
Alignment explanation
Indices: 15690541--15690746 Score: 286
Period size: 47 Copynumber: 4.4 Consensus size: 47
15690531 CCCTTCGGGA
* * *
15690541 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
* *
15690588 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
* * * * *
15690635 CTTATCTCATATATACACTTTCACATTCATCACGTTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
* * *
15690682 CTTATCTCATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
*
15690729 CTTATCACATATACACAC
1 CTTATCACATATATACAC
15690747 CTTGTACATC
Statistics
Matches: 142, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 142 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
Found at i:15693090 original size:37 final size:39
Alignment explanation
Indices: 15692994--15693090 Score: 110
Period size: 40 Copynumber: 2.5 Consensus size: 39
15692984 CACACCAGAA
15692994 TGGCGACCAACGCCTCATCGGATAGTTCGAAGCAAATAAG
1 TGGCGACCAACGCCTCATCGGATAGTTCGAAGC-AATAAG
* * * *
15693034 TGACGACCAATGTCTCATCGGCTAAG-TCGAAGC-A-AAG
1 TGGCGACCAACGCCTCATCGGAT-AGTTCGAAGCAATAAG
*
15693071 TGGCGACCAACGCCCCATCG
1 TGGCGACCAACGCCTCATCG
15693091 AATCTATCTG
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
37 19 0.40
38 1 0.02
40 26 0.54
41 2 0.04
ACGTcount: A:0.30, C:0.29, G:0.25, T:0.16
Consensus pattern (39 bp):
TGGCGACCAACGCCTCATCGGATAGTTCGAAGCAATAAG
Found at i:15695649 original size:28 final size:26
Alignment explanation
Indices: 15695599--15695713 Score: 113
Period size: 28 Copynumber: 4.2 Consensus size: 26
15695589 AGCATGGCTG
* *
15695599 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
15695625 CCAGATACATATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
15695653 CCAGAACAGATATATATGTGGCATAGCCA
1 CCAGAACAG--ATA-ATGTGGCAGAGCCA
* *
15695682 CCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATAA--TGTGGCAGAGCCA
15695710 CCAG
1 CCAG
15695714 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 12
0.81 0.06 0.13
Matches are distributed among these distances:
26 6 0.08
27 14 0.18
28 32 0.42
29 22 0.29
30 2 0.03
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:15695686 original size:57 final size:54
Alignment explanation
Indices: 15695599--15695713 Score: 133
Period size: 57 Copynumber: 2.1 Consensus size: 54
15695589 AGCATGGCTG
* *
15695599 CCAGAACAGATAATGTGACAGAGTCACCAGATACATATAA-TCGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGAT-CAGATAATTCGTGGCAGAGCCA
* * * *
15695653 CCAGAACAGATATATATGTGGCATAGCCACCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAG--ATA-ATGTGACAGAGCCACCAGATCAGATAATTCGTGGCAGAGCCA
15695710 CCAG
1 CCAG
15695714 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 9 0.18
56 9 0.18
57 33 0.65
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.19
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATCAGATAATTCGTGGCAGAGCCA
Found at i:15697158 original size:24 final size:24
Alignment explanation
Indices: 15697131--15697201 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
15697121 CTAGATTTCC
**
15697131 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
15697155 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
15697179 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
15697202 CTCCTGACAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.25, C:0.38, G:0.01, T:0.35
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:15697729 original size:12 final size:12
Alignment explanation
Indices: 15697712--15697742 Score: 55
Period size: 11 Copynumber: 2.7 Consensus size: 12
15697702 CTAAAGTCAA
15697712 AATATTTATTTT
1 AATATTTATTTT
15697724 AATA-TTATTTT
1 AATATTTATTTT
15697735 AATATTTA
1 AATATTTA
15697743 CAGCATGATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 11 0.61
12 7 0.39
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (12 bp):
AATATTTATTTT
Found at i:15699040 original size:13 final size:13
Alignment explanation
Indices: 15699022--15699050 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
15699012 ACCATATCTA
15699022 GGGCATAGTCAAT
1 GGGCATAGTCAAT
15699035 GGGCATAGTCAAT
1 GGGCATAGTCAAT
15699048 GGG
1 GGG
15699051 ACAAGCTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.14, G:0.38, T:0.21
Consensus pattern (13 bp):
GGGCATAGTCAAT
Found at i:15707122 original size:3 final size:3
Alignment explanation
Indices: 15707114--15707142 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
15707104 ATTTTGATGT
15707114 GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
15707143 GAGTTTATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:15707734 original size:42 final size:42
Alignment explanation
Indices: 15707674--15707836 Score: 191
Period size: 42 Copynumber: 3.9 Consensus size: 42
15707664 TAGGGTTACT
* * *
15707674 GAGACTATGTGTAAGACCATATTTGGGATATGGCATCAATAC
1 GAGACTACGTGTAAGACCATATCTGGGATATGGCATCGATAC
* * * *
15707716 AAGACTACGTCTAAGACCATATATGGGATATGGCATCGATAT
1 GAGACTACGTGTAAGACCATATCTGGGATATGGCATCGATAC
** * *
15707758 GAGACTTTGTGTAAGACCATAGCTGGGCTATTGGCATCGATAC
1 GAGACTACGTGTAAGACCATATCTGGGATA-TGGCATCGATAC
* * *
15707801 GAGATTACATGTAAGACCATATCTGCGATATGGCAT
1 GAGACTACGTGTAAGACCATATCTGGGATATGGCAT
15707837 TGGTACGGTA
Statistics
Matches: 99, Mismatches: 21, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
42 65 0.66
43 34 0.34
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.28
Consensus pattern (42 bp):
GAGACTACGTGTAAGACCATATCTGGGATATGGCATCGATAC
Found at i:15707831 original size:85 final size:84
Alignment explanation
Indices: 15707673--15707836 Score: 220
Period size: 85 Copynumber: 1.9 Consensus size: 84
15707663 TTAGGGTTAC
** *
15707673 TGAGACTATGTGTAAGACCATATTTGGGATATGGCATCAATACAAGACTACGTCTAAGACCATAT
1 TGAGACTATGTGTAAGACCATAGCTGGGATATGGCATCAATACAAGACTACATCTAAGACCATAT
*
15707738 ATGGGATATGGCATCGATA
66 ATGCGATATGGCATCGATA
* * * * * *
15707757 TGAGACTTTGTGTAAGACCATAGCTGGGCTATTGGCATCGATACGAGATTACATGTAAGACCATA
1 TGAGACTATGTGTAAGACCATAGCTGGGATA-TGGCATCAATACAAGACTACATCTAAGACCATA
*
15707822 TCTGCGATATGGCAT
65 TATGCGATATGGCAT
15707837 TGGTACGGTA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
84 27 0.40
85 41 0.60
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (84 bp):
TGAGACTATGTGTAAGACCATAGCTGGGATATGGCATCAATACAAGACTACATCTAAGACCATAT
ATGCGATATGGCATCGATA
Found at i:15707854 original size:85 final size:84
Alignment explanation
Indices: 15707674--15707855 Score: 195
Period size: 85 Copynumber: 2.2 Consensus size: 84
15707664 TAGGGTTACT
* ** *
15707674 GAGACTATGTGTAAGACCATATTTGGGATATGGCATCAATACAAGACTACGTCTAAGACCATATA
1 GAGACCATGTGTAAGACCATAGCTGGGATATGGCATCAATACAAGACTACATCTAAGACCATATA
* *
15707739 TGGGATATGGCATCGATAT
66 TGCGATATGGCATCGATAC
** * * * * *
15707758 GAGACTTTGTGTAAGACCATAGCTGGGCTATTGGCATCGATACGAGATTACATGTAAGACCATAT
1 GAGACCATGTGTAAGACCATAGCTGGGATA-TGGCATCAATACAAGACTACATCTAAGACCATAT
* * *
15707823 CTGCGATATGGCATTGGTAC
65 ATGCGATATGGCATCGATAC
15707843 G-GTACCATGTGTA
1 GAG-ACCATGTGTA
15707856 TGGGACCCCC
Statistics
Matches: 80, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
84 27 0.34
85 53 0.66
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (84 bp):
GAGACCATGTGTAAGACCATAGCTGGGATATGGCATCAATACAAGACTACATCTAAGACCATATA
TGCGATATGGCATCGATAC
Found at i:15712772 original size:34 final size:34
Alignment explanation
Indices: 15712729--15712796 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
15712719 AGAGACTAAC
15712729 ACTGAAATTAGATTAGGGTTTATTTTTCATTTTT
1 ACTGAAATTAGATTAGGGTTTATTTTTCATTTTT
15712763 ACTGAAATTAGATTAGGGTTTATTTTTCATTTTT
1 ACTGAAATTAGATTAGGGTTTATTTTTCATTTTT
15712797 CATTTTAATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.26, C:0.06, G:0.15, T:0.53
Consensus pattern (34 bp):
ACTGAAATTAGATTAGGGTTTATTTTTCATTTTT
Found at i:15716046 original size:20 final size:20
Alignment explanation
Indices: 15716021--15716087 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
15716011 GATATGATAT
*
15716021 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
*
15716041 ACATGATATGTATGATATGC
1 ACATGATATGTATGAAATGC
15716061 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
15716081 ACATGAT
1 ACATGAT
15716088 GTAATCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:15716071 original size:40 final size:38
Alignment explanation
Indices: 15716013--15716087 Score: 123
Period size: 40 Copynumber: 1.9 Consensus size: 38
15716003 ATACGTGGGA
15716013 TATGATATACATGATATGTATAAAATGCACATGATATG
1 TATGATATACATGATATGTATAAAATGCACATGATATG
*
15716051 TATGATATGCACATGATATGTATGAAATGCACATGAT
1 TATGATAT--ACATGATATGTATAAAATGCACATGAT
15716088 GTAATCATAA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
38 8 0.24
40 26 0.76
ACGTcount: A:0.40, C:0.09, G:0.17, T:0.33
Consensus pattern (38 bp):
TATGATATACATGATATGTATAAAATGCACATGATATG
Found at i:15716166 original size:26 final size:26
Alignment explanation
Indices: 15716137--15716297 Score: 197
Period size: 26 Copynumber: 6.3 Consensus size: 26
15716127 GAGGAAGTGC
*
15716137 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
15716163 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
15716189 CAAAGGGCTTATGCCCAAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
15716215 AAAAGGGTTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* * *
15716241 AAAAGTG-TTTTGCCCCAGTTTA-TC
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
15716265 AAAAGGGCTT-CGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
15716288 AAAAGAGGCT
1 AAAAG-GGCT
15716298 AGGCCTCTAG
Statistics
Matches: 120, Mismatches: 12, Indels: 8
0.86 0.09 0.06
Matches are distributed among these distances:
23 8 0.07
24 19 0.16
25 15 0.12
26 78 0.65
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:15723638 original size:34 final size:34
Alignment explanation
Indices: 15723591--15723659 Score: 111
Period size: 34 Copynumber: 2.0 Consensus size: 34
15723581 TAGGAGAAAT
15723591 CGTGTAGGAGATCTCATCGAGGAATATCGCAAAA
1 CGTGTAGGAGATCTCATCGAGGAATATCGCAAAA
* * *
15723625 CGTGTAGGGGATCTCGTTGAGGAATATCGCAAAA
1 CGTGTAGGAGATCTCATCGAGGAATATCGCAAAA
15723659 C
1 C
15723660 AAGTGTGTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (34 bp):
CGTGTAGGAGATCTCATCGAGGAATATCGCAAAA
Found at i:15724235 original size:9 final size:10
Alignment explanation
Indices: 15724223--15724299 Score: 54
Period size: 9 Copynumber: 7.8 Consensus size: 10
15724213 TACGTGGGAT
15724223 ATGATAT-AC
1 ATGATATGAC
*
15724232 ATGAT-TGAT
1 ATGATATGAC
15724241 ATGATATGCAC
1 ATGATATG-AC
*
15724252 ATGATATG-T
1 ATGATATGAC
* *
15724261 ATAAAATGCAC
1 ATGATATG-AC
*
15724272 ATGATATG-T
1 ATGATATGAC
15724281 ATGATATGCAC
1 ATGATATG-AC
15724292 ATGATATG
1 ATGATATG
15724300 TATGAAATGC
Statistics
Matches: 51, Mismatches: 10, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
8 1 0.02
9 25 0.49
10 2 0.04
11 23 0.45
ACGTcount: A:0.39, C:0.09, G:0.18, T:0.34
Consensus pattern (10 bp):
ATGATATGAC
Found at i:15724255 original size:20 final size:20
Alignment explanation
Indices: 15724222--15724316 Score: 133
Period size: 20 Copynumber: 4.8 Consensus size: 20
15724212 ATACGTGGGA
15724222 TATGATAT--ACATGAT-TG
1 TATGATATGCACATGATATG
15724239 ATATGATATGCACATGATATG
1 -TATGATATGCACATGATATG
* *
15724260 TATAAAATGCACATGATATG
1 TATGATATGCACATGATATG
15724280 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
*
15724300 TATGAAATGCACATGAT
1 TATGATATGCACATGAT
15724317 GTAATCATAA
Statistics
Matches: 69, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
18 8 0.12
20 59 0.86
21 2 0.03
ACGTcount: A:0.39, C:0.09, G:0.18, T:0.34
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:15724257 original size:11 final size:11
Alignment explanation
Indices: 15724241--15724316 Score: 56
Period size: 11 Copynumber: 7.5 Consensus size: 11
15724231 CATGATTGAT
15724241 ATGATATGCAC
1 ATGATATGCAC
*
15724252 ATGATATG--T
1 ATGATATGCAC
* *
15724261 ATAAAATGCAC
1 ATGATATGCAC
*
15724272 ATGATATG--T
1 ATGATATGCAC
15724281 ATGATATGCAC
1 ATGATATGCAC
*
15724292 ATGATATG--T
1 ATGATATGCAC
*
15724301 ATGAAATGCAC
1 ATGATATGCAC
15724312 ATGAT
1 ATGAT
15724317 GTAATCATAA
Statistics
Matches: 47, Mismatches: 12, Indels: 12
0.66 0.17 0.17
Matches are distributed among these distances:
9 21 0.45
11 26 0.55
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:15724274 original size:40 final size:40
Alignment explanation
Indices: 15724230--15724316 Score: 149
Period size: 40 Copynumber: 2.2 Consensus size: 40
15724220 GATATGATAT
15724230 ACATGAT-TGATATGATATGCACATGATATGTATAAAATGC
1 ACATGATATG-TATGATATGCACATGATATGTATAAAATGC
*
15724270 ACATGATATGTATGATATGCACATGATATGTATGAAATGC
1 ACATGATATGTATGATATGCACATGATATGTATAAAATGC
15724310 ACATGAT
1 ACATGAT
15724317 GTAATCATAA
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
40 43 0.96
41 2 0.04
ACGTcount: A:0.39, C:0.10, G:0.18, T:0.32
Consensus pattern (40 bp):
ACATGATATGTATGATATGCACATGATATGTATAAAATGC
Done.