Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 47 of 313
Found at i:15724437 original size:25 final size:26
Alignment explanation
Indices: 15724366--15724474 Score: 156
Period size: 26 Copynumber: 4.3 Consensus size: 26
15724356 GAGGAAGTGC
*
15724366 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
15724392 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
15724418 AAAAGGGCTT-TGCCCCAGTTTA-TC
1 AAAAGGGCTTATGCCCCAGTTTATTG
15724442 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
15724465 AAAAGAGGCT
1 AAAAG-GGCT
15724475 AGGCCTCCAG
Statistics
Matches: 79, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
23 8 0.10
24 24 0.30
25 12 0.15
26 35 0.44
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:15724723 original size:31 final size:31
Alignment explanation
Indices: 15724685--15724775 Score: 85
Period size: 38 Copynumber: 2.7 Consensus size: 31
15724675 CCATTAAACG
15724685 AAAGGCTTCGGCCCAGTAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTAATATGAAACATGA
** *
15724716 AAAGGCTTCAACCCAGTGTTATGAAATATGAAATATGA
1 AAAGGCTTCGGCCCA--G---T--AATATGAAACATGA
15724754 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTAATATG
15724776 TTGAGATTAG
Statistics
Matches: 48, Mismatches: 5, Indels: 15
0.71 0.07 0.22
Matches are distributed among these distances:
30 5 0.10
31 13 0.27
33 2 0.04
36 2 0.04
38 26 0.54
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAACATGA
Found at i:15725734 original size:27 final size:27
Alignment explanation
Indices: 15725659--15725735 Score: 102
Period size: 27 Copynumber: 2.9 Consensus size: 27
15725649 GCAAAACAAT
* * * *
15725659 CATTTTACCCTACAGGGGTATGTCAGT
1 CATTTTACACTACAAGGGTATTTCAGG
15725686 CATTTTACACTACAAGGGTATTTC-GG
1 CATTTTACACTACAAGGGTATTTCAGG
15725712 CAATTTTACACTACAAGGGTATTT
1 C-ATTTTACACTACAAGGGTATTT
15725736 TGATAATTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 2 0.04
27 43 0.96
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.35
Consensus pattern (27 bp):
CATTTTACACTACAAGGGTATTTCAGG
Found at i:15725743 original size:27 final size:27
Alignment explanation
Indices: 15725660--15725745 Score: 93
Period size: 27 Copynumber: 3.2 Consensus size: 27
15725650 CAAAACAATC
* * * *
15725660 ATTTTACCCTACAGGGGTATGTCAGTC-
1 ATTTTACACTACAAGGGTATTTC-GACA
*
15725687 ATTTTACACTACAAGGGTATTTCGGCA
1 ATTTTACACTACAAGGGTATTTCGACA
* *
15725714 ATTTTACACTACAAGGGTATTTTGATA
1 ATTTTACACTACAAGGGTATTTCGACA
15725741 ATTTT
1 ATTTT
15725746 TTAAATTAGG
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
26 2 0.04
27 49 0.96
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.38
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTCGACA
Found at i:15725778 original size:27 final size:27
Alignment explanation
Indices: 15725700--15726227 Score: 575
Period size: 27 Copynumber: 19.7 Consensus size: 27
15725690 TTACACTACA
* * *
15725700 AGGGTATTTCGGCAATTTTAC-ACTACA
1 AGGGTATTTCGGTAATTTTACAAAT-CG
* * ** *
15725727 AGGGTATTTTGATAATTTTTTAAAT-T
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
15725753 AGGAGTGTTTTGGTAATTTTACAAATCG
1 AGG-GTATTTCGGTAATTTTACAAATCG
15725781 AGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
*
15725808 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* ** * **
15725835 AGGCTATTTCAATAAATTTACAAATTA
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
15725862 AGGGTGTTTAGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
15725889 AAGGTGTTTCGGTAATTTCACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * * * *
15725916 AGGGTGTTTCGATAATTTCATAAATCA
1 AGGGTATTTCGGTAATTTTACAAATCG
**
15725943 AGGGTATTTCAATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
15725970 AGGGTATTTCAGTAATTTCAC-AATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
*
15725996 AGGGTATTTTGGTAATTTTACAAATC-
1 AGGGTATTTCGGTAATTTTACAAATCG
*
15726022 AGGGGTATTTTGGTAATTTTACAAATCG
1 A-GGGTATTTCGGTAATTTTACAAATCG
* *
15726050 AGGGTATTTCAGTAATTTCAC-AATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
*
15726076 AGGGTATTTTGGTAATTTTACAAATC-
1 AGGGTATTTCGGTAATTTTACAAATCG
*
15726102 AGGGGTATTTTGGTAATTTTACAAATCG
1 A-GGGTATTTCGGTAATTTTACAAATCG
* *
15726130 AGGGTATTTCAGTAATTTCAC-AATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
*
15726156 AGGGTATTTCAGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
15726183 AGGGCATTTCAGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
**
15726210 AGGGTATTTTAGTAATTT
1 AGGGTATTTCGGTAATTT
15726228 CTCTTTATTA
Statistics
Matches: 433, Mismatches: 58, Indels: 20
0.85 0.11 0.04
Matches are distributed among these distances:
26 76 0.18
27 350 0.81
28 7 0.02
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATCG
Found at i:15726029 original size:80 final size:80
Alignment explanation
Indices: 15725764--15726228 Score: 605
Period size: 80 Copynumber: 5.8 Consensus size: 80
15725754 GGAGTGTTTT
* *
15725764 GGTAATTTTACAAATC-GAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTC-GATAATTTT
1 GGTAATTTTACAAATCAG-GGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAG-TAATTTC
*
15725827 ACAAATCGAGGCTATTTC
64 AC-AATCGAGGGTATTTC
** * * * * * * *
15725845 AATAAATTTACAAATTAAGGGTGTTT-AGGTAATTTTACAAATCGAAGGTGTTTCGGTAATTTCA
1 GGTAATTTTACAAATCAGGGGTATTTCA-GTAATTTTACAAATCGAGGGTATTTCAGTAATTTCA
*
15725909 CAAATCGAGGGTGTTTC
65 C-AATCGAGGGTATTTC
* * * * *
15725926 GATAATTTCATAAATCAAGGGTATTTCAATAATTTTACAAATCGAGGGTATTTCAGTAATTTCAC
1 GGTAATTTTACAAATCAGGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTCAC
*
15725991 AATCGAGGGTATTTT
66 AATCGAGGGTATTTC
**
15726006 GGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTCAC
1 GGTAATTTTACAAATCAGGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTCAC
*
15726071 AATCGAGGGTATTTT
66 AATCGAGGGTATTTC
**
15726086 GGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTCAC
1 GGTAATTTTACAAATCAGGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTCAC
15726151 AATCGAGGGTATTTC
66 AATCGAGGGTATTTC
* * *
15726166 AGTAATTTTACAAATC-GAGGGCATTTCAGTAATTTTACAAATCGAGGGTATTTTAGTAATTTC
1 GGTAATTTTACAAATCAG-GGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTC
15726229 TCTTTATTAT
Statistics
Matches: 342, Mismatches: 37, Indels: 11
0.88 0.09 0.03
Matches are distributed among these distances:
79 1 0.00
80 221 0.65
81 118 0.35
82 2 0.01
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.37
Consensus pattern (80 bp):
GGTAATTTTACAAATCAGGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTCAC
AATCGAGGGTATTTC
Found at i:15729214 original size:49 final size:49
Alignment explanation
Indices: 15729141--15729374 Score: 281
Period size: 49 Copynumber: 4.7 Consensus size: 49
15729131 CAAAGCTATG
* * *
15729141 TGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAATTATC
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATC
* * **
15729190 CGGTACACGTAGTAGCCTGCACTTAGTACTACACACT-TGACCTAACCATC
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACA-TGCGACC-AATTATC
* * * * *
15729240 TGATACACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTATC
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATC
* * * *
15729291 GGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCAATTATC
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATC
15729340 TGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACA
15729375 CGTGACCCCA
Statistics
Matches: 153, Mismatches: 27, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
49 71 0.46
50 46 0.30
51 36 0.24
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
TGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATC
Found at i:15729373 original size:100 final size:99
Alignment explanation
Indices: 15729141--15729381 Score: 315
Period size: 100 Copynumber: 2.4 Consensus size: 99
15729131 CAAAGCTATG
* * * * *
15729141 TGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGC
1 TGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGC
*
15729206 CTGCACTTAGTACTACACACTTGACCTAACCATC
66 CTGCACTTAGTACTACACACTCGACCTAACCATC
* * * *
15729240 TGATACACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTA
1 TGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACACATAGTA
* **
15729305 GCTTGCACTTAGTACTACACA-TGCGACC-AATTATC
64 GCCTGCACTTAGTACTACACACT-CGACCTAACCATC
*
15729340 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACC
15729382 CCAAAATAGA
Statistics
Matches: 123, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
99 36 0.29
100 47 0.38
101 40 0.33
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (99 bp):
TGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGC
CTGCACTTAGTACTACACACTCGACCTAACCATC
Found at i:15731650 original size:11 final size:11
Alignment explanation
Indices: 15731634--15731661 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
15731624 GCCAAAGCCC
15731634 ATATCACAATA
1 ATATCACAATA
15731645 ATATCACAATA
1 ATATCACAATA
15731656 ATATCA
1 ATATCA
15731662 TACATGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.54, C:0.18, G:0.00, T:0.29
Consensus pattern (11 bp):
ATATCACAATA
Found at i:15732259 original size:81 final size:82
Alignment explanation
Indices: 15732168--15732447 Score: 376
Period size: 81 Copynumber: 3.5 Consensus size: 82
15732158 TACAAGGTTA
*
15732168 TTTCGATAATTTTACAAATCG-GGGATGTTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAAT
1 TTTCGATAATTTCACAAATCGAGGG-TGTTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAAT
* *
15732232 TTTACAAATCGAGGGTGT
65 TTTACAAATCGGGGGTAT
* *
15732250 TTTCG-TAATTTCACAAATTGAGGGTGTTT-AGGTAATTTTACAAATCGAGGGTGTTTCAGTAAT
1 TTTCGATAATTTCACAAATCGAGGGTGTTTCA-GTAATTTTACAAATCGAGGGTATTTCAGTAAT
15732313 TTTACAAATCGGGGGTAT
65 TTTACAAATCGGGGGTAT
* * *
15732331 TTT-GGTAATTTCAC-AATCGAGGGTATTTCAGTAATTTCAC-AATCGAGGGTATTTCAGTAATT
1 TTTCGATAATTTCACAAATCGAGGGTGTTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATT
15732393 TTACAAATCGGGGGTAT
66 TTACAAATCGGGGGTAT
* ** * *
15732410 TTT-GATAATTTTACAAATTAAGGGTATTTTAGTAATTT
1 TTTCGATAATTTCACAAATCGAGGGTGTTTCAGTAATTT
15732448 CTCTTTATTA
Statistics
Matches: 179, Mismatches: 14, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
79 50 0.28
80 43 0.24
81 78 0.44
82 8 0.04
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (82 bp):
TTTCGATAATTTCACAAATCGAGGGTGTTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATT
TTACAAATCGGGGGTAT
Found at i:15732355 original size:26 final size:27
Alignment explanation
Indices: 15732166--15732447 Score: 326
Period size: 27 Copynumber: 10.5 Consensus size: 27
15732156 ACTACAAGGT
15732166 TATTTC-GATAATTTTACAAATCG-GGG
1 TATTTCAG-TAATTTTACAAATCGAGGG
*
15732192 ATGTTTCAGTAATTTTACAAATCGAGGG
1 -TATTTCAGTAATTTTACAAATCGAGGG
15732220 TATTTCAGTAATTTTACAAATCGAGGG
1 TATTTCAGTAATTTTACAAATCGAGGG
* * *
15732247 TGTTTTC-GTAATTTCACAAATTGAGGG
1 T-ATTTCAGTAATTTTACAAATCGAGGG
*
15732274 TGTTT-AGGTAATTTTACAAATCGAGGG
1 TATTTCA-GTAATTTTACAAATCGAGGG
* *
15732301 TGTTTCAGTAATTTTACAAATCGGGGG
1 TATTTCAGTAATTTTACAAATCGAGGG
** *
15732328 TATTTTGGTAATTTCAC-AATCGAGGG
1 TATTTCAGTAATTTTACAAATCGAGGG
*
15732354 TATTTCAGTAATTTCAC-AATCGAGGG
1 TATTTCAGTAATTTTACAAATCGAGGG
*
15732380 TATTTCAGTAATTTTACAAATCGGGGG
1 TATTTCAGTAATTTTACAAATCGAGGG
* **
15732407 TATTT-TGATAATTTTACAAATTAAGGG
1 TATTTCAG-TAATTTTACAAATCGAGGG
*
15732434 TATTTTAGTAATTT
1 TATTTCAGTAATTT
15732448 CTCTTTATTA
Statistics
Matches: 223, Mismatches: 23, Indels: 18
0.84 0.09 0.07
Matches are distributed among these distances:
26 52 0.23
27 161 0.72
28 10 0.04
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
TATTTCAGTAATTTTACAAATCGAGGG
Found at i:15736575 original size:18 final size:19
Alignment explanation
Indices: 15736511--15736603 Score: 77
Period size: 19 Copynumber: 4.9 Consensus size: 19
15736501 CTTATAAGGA
* *
15736511 AAATCATAAAATATTATA-
1 AAATTATAAAAAATTATAT
*
15736529 AATATTATAAAAACTTATAT
1 AA-ATTATAAAAAATTATAT
*
15736549 AAAAT-TAAAAAATTA-AT
1 AAATTATAAAAAATTATAT
15736566 AAATTATAAAAAAATTATA-
1 AAATTAT-AAAAAATTATAT
* *
15736585 AGAATAATAAAAAAATATA
1 A-AATTATAAAAAATTATA
15736604 AAACATATTA
Statistics
Matches: 61, Mismatches: 8, Indels: 11
0.76 0.10 0.14
Matches are distributed among these distances:
17 6 0.10
18 12 0.20
19 35 0.57
20 8 0.13
ACGTcount: A:0.66, C:0.02, G:0.01, T:0.31
Consensus pattern (19 bp):
AAATTATAAAAAATTATAT
Found at i:15736669 original size:8 final size:9
Alignment explanation
Indices: 15736443--15736682 Score: 92
Period size: 10 Copynumber: 24.8 Consensus size: 9
15736433 CAATTTTCTA
15736443 ATAAAAATT
1 ATAAAAATT
15736452 ATTAAAAATTT
1 A-TAAAAA-TT
*
15736463 ATATAAAGTT
1 ATA-AAAATT
**
15736473 ATAAATTTT
1 ATAAAAATT
15736482 ATACAAAAAACTT
1 AT---AAAAA-TT
*
15736495 ATAAAACTT
1 ATAAAAATT
*
15736504 ATAAGGAAAATC
1 AT-A--AAAATT
15736516 ATAAAATATT
1 ATAAAA-ATT
*
15736526 ATAAATATT
1 ATAAAAATT
15736535 ATAAAAACTT
1 ATAAAAA-TT
15736545 ATATAAAATT
1 ATA-AAAATT
15736555 A-AAAAATT
1 ATAAAAATT
*
15736563 A-ATAAATT
1 ATAAAAATT
15736571 ATAAAAAAATT
1 AT--AAAAATT
* *
15736582 ATAAGAATA
1 ATAAAAATT
*
15736591 ATAAAAAAAT
1 AT-AAAAATT
15736601 ATAAAACA-T
1 ATAAAA-ATT
15736610 ATTAAAAATAT
1 A-TAAAAAT-T
*
15736621 TTAAAAATTT
1 ATAAAAA-TT
*
15736631 ATACAAACTT
1 ATA-AAAATT
* ** **
15736641 GTATTAGCT
1 ATAAAAATT
15736650 ATAAAAATT
1 ATAAAAATT
15736659 ATAAAAA-T
1 ATAAAAATT
* *
15736667 ATAATAGTT
1 ATAAAAATT
15736676 ATAAAAA
1 ATAAAAA
15736683 GTCATGTATT
Statistics
Matches: 172, Mismatches: 35, Indels: 48
0.67 0.14 0.19
Matches are distributed among these distances:
8 20 0.12
9 57 0.33
10 58 0.34
11 24 0.14
12 9 0.05
13 4 0.02
ACGTcount: A:0.60, C:0.04, G:0.03, T:0.33
Consensus pattern (9 bp):
ATAAAAATT
Found at i:15736791 original size:10 final size:10
Alignment explanation
Indices: 15736778--15736918 Score: 92
Period size: 10 Copynumber: 14.3 Consensus size: 10
15736768 TTTTAAGAAA
*
15736778 TTTTATATTT
1 TTTTATAATT
15736788 TTTTATAATT
1 TTTTATAATT
15736798 TTTTATAA-T
1 TTTTATAATT
*
15736807 TATTATAATT
1 TTTTATAATT
*
15736817 TTTTAGAATT
1 TTTTATAATT
* *
15736827 TATAATAATT
1 TTTTATAATT
*
15736837 TTTTATAAGT
1 TTTTATAATT
**
15736847 TTAAATAATT
1 TTTTATAATT
*
15736857 TTTAAT-ATT
1 TTTTATAATT
* * *
15736866 TTATGTAAGAT
1 TTTTATAA-TT
* *
15736877 TTTTGTAATA
1 TTTTATAATT
*
15736887 TTTTATGA--
1 TTTTATAATT
*
15736895 TTTTATAATC
1 TTTTATAATT
15736905 TTTTATATATT
1 TTTTATA-ATT
15736916 TTT
1 TTT
15736919 ATTAGACAAA
Statistics
Matches: 100, Mismatches: 25, Indels: 11
0.74 0.18 0.08
Matches are distributed among these distances:
8 7 0.07
9 14 0.14
10 66 0.66
11 13 0.13
ACGTcount: A:0.33, C:0.01, G:0.04, T:0.62
Consensus pattern (10 bp):
TTTTATAATT
Found at i:15736800 original size:29 final size:29
Alignment explanation
Indices: 15736750--15736836 Score: 70
Period size: 29 Copynumber: 3.0 Consensus size: 29
15736740 TTTTAATTAA
**
15736750 ATTATAATTTTTATAG-GCTTTTAAGAAATT
1 ATTATAATTTTT-TAGAATTTTTAA-AAATT
* * * *
15736780 -TTATATTTTTTTATAATTTTTTATAATT
1 ATTATAATTTTTTAGAATTTTTAAAAATT
* *
15736808 ATTATAATTTTTTAGAATTTATAATAATT
1 ATTATAATTTTTTAGAATTTTTAAAAATT
15736837 TTTTATAAGT
Statistics
Matches: 45, Mismatches: 10, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
28 6 0.13
29 39 0.87
ACGTcount: A:0.36, C:0.01, G:0.05, T:0.59
Consensus pattern (29 bp):
ATTATAATTTTTTAGAATTTTTAAAAATT
Found at i:15737173 original size:16 final size:16
Alignment explanation
Indices: 15737152--15737203 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
15737142 TTTGGTTCGC
15737152 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
15737168 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
15737184 TGTAATGGAATAGAGG
1 TGTATTGGATTAGAGG
15737200 TGTA
1 TGTA
15737204 ATAGCAAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.29, C:0.00, G:0.37, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:15737250 original size:45 final size:44
Alignment explanation
Indices: 15737184--15737278 Score: 129
Period size: 45 Copynumber: 2.1 Consensus size: 44
15737174 GGATTAGAGG
*
15737184 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGTGTAATAGCAAAAC-ACTGTTTGGTTGAA
* **
15737229 TGTAATGGAATAGA-GTCGTAATAGTAAAACTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGT-GTAATAGCAAAACACTGTTTGGTTGAA
15737273 TGTAAT
1 TGTAAT
15737279 AGAGGTGTAA
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
44 20 0.44
45 25 0.56
ACGTcount: A:0.35, C:0.05, G:0.26, T:0.34
Consensus pattern (44 bp):
TGTAATGGAATAGAGGTGTAATAGCAAAACACTGTTTGGTTGAA
Found at i:15737448 original size:9 final size:9
Alignment explanation
Indices: 15737434--15737469 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
15737424 ACATAATTAT
15737434 TATTAAATA
1 TATTAAATA
15737443 TATTAAATA
1 TATTAAATA
15737452 TATT--ATA
1 TATTAAATA
15737459 -ATTAAATA
1 TATTAAATA
15737467 TAT
1 TAT
15737470 AATTTAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
6 3 0.12
7 3 0.12
8 3 0.12
9 15 0.62
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (9 bp):
TATTAAATA
Found at i:15737456 original size:24 final size:25
Alignment explanation
Indices: 15737405--15737469 Score: 78
Period size: 24 Copynumber: 2.6 Consensus size: 25
15737395 TCAAAAATAA
*
15737405 ATAATTTAATCATATTTAAACATAATT
1 ATAATTAAAT-ATA-TTAAACATAATT
* *
15737432 ATTATTAAATATATTAAATAT-ATT
1 ATAATTAAATATATTAAACATAATT
15737456 ATAATTAAATATAT
1 ATAATTAAATATAT
15737470 AATTTAATAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
24 16 0.47
25 7 0.21
26 3 0.09
27 8 0.24
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (25 bp):
ATAATTAAATATATTAAACATAATT
Found at i:15737651 original size:47 final size:46
Alignment explanation
Indices: 15737600--15737760 Score: 140
Period size: 47 Copynumber: 3.6 Consensus size: 46
15737590 GATTTAATAA
15737600 AATTTAAAATAATTATAACTAATAAATTATCTTATATGAATTTGTAT
1 AATTTAAAATAATTATAA-TAATAAATTATCTTATATGAATTTGTAT
* * * * *
15737647 AATTTAAAATAATTATTATTACATATAAT-TTA-AT-AA---GATAT
1 AATTTAAAATAATTATAATAATAAATTATCTTATATGAATTTG-TAT
* * * *
15737688 AATTTCATAA-AATTATTGATAATAAATTTTCTTATATGAATTTATAT
1 AATTT-AAAATAATTA-TAATAATAAATTATCTTATATGAATTTGTAT
15737735 AATTTAAAATAATT-TATATAATAAAT
1 AATTTAAAATAATTATA-ATAATAAAT
15737761 CTATTGTATA
Statistics
Matches: 88, Mismatches: 15, Indels: 23
0.70 0.12 0.18
Matches are distributed among these distances:
40 1 0.01
41 13 0.15
42 11 0.12
43 5 0.06
44 4 0.05
45 6 0.07
46 19 0.22
47 29 0.33
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.45
Consensus pattern (46 bp):
AATTTAAAATAATTATAATAATAAATTATCTTATATGAATTTGTAT
Found at i:15746568 original size:38 final size:38
Alignment explanation
Indices: 15746525--15746623 Score: 117
Period size: 38 Copynumber: 2.6 Consensus size: 38
15746515 GAAATCCTTG
** *
15746525 TTATAATTATTGTAATTGTAATTTGCGATCGAATATTA
1 TTATAATTATTGTAATTGTAATTTGCGATAAAAAATTA
* ** *
15746563 TTATAATTATTGTAATTGTATTTTTTGGTAAAAAATTA
1 TTATAATTATTGTAATTGTAATTTGCGATAAAAAATTA
* *
15746601 TTATAATTATGGTAATTATAATT
1 TTATAATTATTGTAATTGTAATT
15746624 ATTATATTCA
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 51 1.00
ACGTcount: A:0.36, C:0.02, G:0.11, T:0.51
Consensus pattern (38 bp):
TTATAATTATTGTAATTGTAATTTGCGATAAAAAATTA
Found at i:15748919 original size:15 final size:16
Alignment explanation
Indices: 15748890--15748923 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
15748880 TCAAAAATTG
*
15748890 AATCAAAATCGGTGAT
1 AATCAAAATCAGTGAT
15748906 AATC-AAATCAGTGAT
1 AATCAAAATCAGTGAT
15748921 AAT
1 AAT
15748924 GTATAAATCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.47, C:0.12, G:0.15, T:0.26
Consensus pattern (16 bp):
AATCAAAATCAGTGAT
Found at i:15753676 original size:56 final size:56
Alignment explanation
Indices: 15753615--15753748 Score: 214
Period size: 56 Copynumber: 2.4 Consensus size: 56
15753605 GACCATGGCA
** *
15753615 TCGATATATGTGTTTGAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATT
1 TCGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
*
15753671 TCGATATATGTGTGCAAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
1 TCGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
* *
15753727 CCGGTATATGTGTGCGAGTAAG
1 TCGATATATGTGTGCGAGTAAG
15753749 GCCTTGTTTG
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 71 1.00
ACGTcount: A:0.27, C:0.13, G:0.25, T:0.35
Consensus pattern (56 bp):
TCGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
Found at i:15758773 original size:26 final size:26
Alignment explanation
Indices: 15758744--15758803 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
15758734 TCCCTTTGAA
* * *
15758744 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
15758770 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
*
15758798 CCATTC
1 TCATTC
15758804 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:15758789 original size:28 final size:28
Alignment explanation
Indices: 15758758--15758829 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
15758748 TCGATATTTT
*
15758758 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
15758786 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
15758814 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
15758830 CTTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:15764019 original size:80 final size:80
Alignment explanation
Indices: 15763934--15764254 Score: 624
Period size: 80 Copynumber: 4.0 Consensus size: 80
15763924 TGATTAGAAG
*
15763934 ATTCTCCTGTATATTCGGTTTTAATTTCATTAGTAGCTATATTTTCAGTTTGATTACCAAAAATC
1 ATTCTCTTGTATATTCGGTTTTAATTTCATTAGTAGCTATATTTTCAGTTTGATTACCAAAAATC
15763999 CTAGTTGTATTTTCA
66 CTAGTTGTATTTTCA
15764014 ATTCTCTTGTATATTCGGTTTTAATTTCATTAGTAGCTATATTTTCAGTTTGATTACCAAAAATC
1 ATTCTCTTGTATATTCGGTTTTAATTTCATTAGTAGCTATATTTTCAGTTTGATTACCAAAAATC
15764079 CTAGTTGTATTTTCA
66 CTAGTTGTATTTTCA
15764094 ATTCTCTTGTATATTCGGTTTTAATTTCATTAGTAGCTATATTTTCAGTTTGATTACCAAAAATC
1 ATTCTCTTGTATATTCGGTTTTAATTTCATTAGTAGCTATATTTTCAGTTTGATTACCAAAAATC
15764159 CTAGTTGTATTTTCA
66 CTAGTTGTATTTTCA
15764174 ATTCTCTTGTATATTCGGTTTTAATTTCATTAGTAGCTATATTTTCAGTTTGATTACCAAAAATC
1 ATTCTCTTGTATATTCGGTTTTAATTTCATTAGTAGCTATATTTTCAGTTTGATTACCAAAAATC
*
15764239 CTAGTTGCATTTTCA
66 CTAGTTGTATTTTCA
15764254 A
1 A
15764255 CTGTCTCAAA
Statistics
Matches: 239, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 239 1.00
ACGTcount: A:0.26, C:0.14, G:0.11, T:0.48
Consensus pattern (80 bp):
ATTCTCTTGTATATTCGGTTTTAATTTCATTAGTAGCTATATTTTCAGTTTGATTACCAAAAATC
CTAGTTGTATTTTCA
Found at i:15772194 original size:98 final size:98
Alignment explanation
Indices: 15772025--15772217 Score: 307
Period size: 98 Copynumber: 2.0 Consensus size: 98
15772015 ACAGGGCATA
* *
15772025 ATGCCTTGGCTGTGGTCGAAACTGACTTAGGTCACACAACTAACCACACGCCCGTGTGTCTAGCC
1 ATGCCTTGGCCGTGGTCGAAACTGACTTAGGTCACACAACTAACCACACGCCCGTATGTCTAGCC
*
15772090 CGTGTACCATTCGAAA-TAGCCACACTCGCCCGT
66 CGTGTACCATTC-AAATTAGCCACACACGCCCGT
* * * *
15772123 ATGCCTTGGCCGTGGTCGAAACTGACTTGGGTCACACAGCTAACTACACGCCTGTATGTCTAGCC
1 ATGCCTTGGCCGTGGTCGAAACTGACTTAGGTCACACAACTAACCACACGCCCGTATGTCTAGCC
15772188 CGTGTACCATTCAAATTAGCCACACACGCC
66 CGTGTACCATTCAAATTAGCCACACACGCC
15772218 GTGTGCCAAG
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
97 3 0.03
98 84 0.97
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (98 bp):
ATGCCTTGGCCGTGGTCGAAACTGACTTAGGTCACACAACTAACCACACGCCCGTATGTCTAGCC
CGTGTACCATTCAAATTAGCCACACACGCCCGT
Found at i:15773785 original size:43 final size:42
Alignment explanation
Indices: 15773724--15773832 Score: 123
Period size: 42 Copynumber: 2.6 Consensus size: 42
15773714 AATGTCAGCA
*
15773724 TCCCAGAC-GTGGTCTTACATGTAATCAAATACCGATG-CCACTG
1 TCCCAGACAG-GGTCTTACACGTAATCAAATA-CGATGTCCA-TG
** * *
15773767 TCCCAGACAGGGTCTTACACAAAATCATATACGATGTCGATG
1 TCCCAGACAGGGTCTTACACGTAATCAAATACGATGTCCATG
*
15773809 TCCCAGACATGGTCTTACACGTAA
1 TCCCAGACAGGGTCTTACACGTAA
15773833 ATCACAAATC
Statistics
Matches: 56, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
42 28 0.50
43 27 0.48
44 1 0.02
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (42 bp):
TCCCAGACAGGGTCTTACACGTAATCAAATACGATGTCCATG
Found at i:15774460 original size:16 final size:16
Alignment explanation
Indices: 15774439--15774480 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
15774429 CATTTTGACC
15774439 CCTCAATTTACAAATT
1 CCTCAATTTACAAATT
15774455 CCTCAATTTACAAATT
1 CCTCAATTTACAAATT
* *
15774471 TCTTAATTTA
1 CCTCAATTTA
15774481 GTCCTTAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.43
Consensus pattern (16 bp):
CCTCAATTTACAAATT
Found at i:15778853 original size:27 final size:26
Alignment explanation
Indices: 15778822--15778999 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 26
15778812 TAAATTGTAC
15778822 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
15778849 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
15778875 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
15778903 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
15778931 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* * *
15778958 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
15778985 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
15779000 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.01
27 100 0.79
28 25 0.20
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:15778938 original size:82 final size:81
Alignment explanation
Indices: 15778823--15778978 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
15778813 AAATTGTACA
* * *
15778823 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
15778887 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
15778904 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
15778969 TGCGAGTTGA
65 TGCGAATTGA
15778979 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:15778990 original size:82 final size:81
Alignment explanation
Indices: 15778819--15778999 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
15778809 GATTAAATTG
* * *
15778819 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
15778884 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
15778900 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
15778964 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
15778982 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
15779000 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 20 0.24
82 63 0.76
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:15787403 original size:22 final size:22
Alignment explanation
Indices: 15787362--15787403 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
15787352 TGGAGCAGGA
* **
15787362 ATATCGATACCTTATTAAAAAT
1 ATATCAATACCTTAAGAAAAAT
15787384 ATATCAATACCTTAAGAAAA
1 ATATCAATACCTTAAGAAAA
15787404 GTATCGATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.50, C:0.14, G:0.05, T:0.31
Consensus pattern (22 bp):
ATATCAATACCTTAAGAAAAAT
Found at i:15787413 original size:20 final size:21
Alignment explanation
Indices: 15787362--15787414 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 21
15787352 TGGAGCAGGA
15787362 ATATCGATACCTTATTAAAAAT
1 ATATCGATACCTTA-TAAAAAT
*
15787384 ATATCAATACCTTA-AGAAAA-
1 ATATCGATACCTTATA-AAAAT
*
15787404 GTATCGATACC
1 ATATCGATACC
15787415 AGATAGACAC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 10 0.37
21 4 0.15
22 13 0.48
ACGTcount: A:0.45, C:0.17, G:0.08, T:0.30
Consensus pattern (21 bp):
ATATCGATACCTTATAAAAAT
Found at i:15791525 original size:46 final size:46
Alignment explanation
Indices: 15791458--15791630 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
15791448 TAGATGAGCA
*
15791458 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
15791504 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
15791551 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
15791597 CCCGATCTCGTTGAGTTGAGTCCGAGTTCGCTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
15791631 AGGGCGGGTT
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 59 0.57
47 28 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:15791614 original size:93 final size:93
Alignment explanation
Indices: 15791455--15791626 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
15791445 ATTTAGATGA
* * *
15791455 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
15791520 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
15791548 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCGAACGCCCGATCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
15791613 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
15791627 CTTAAGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:15796515 original size:46 final size:46
Alignment explanation
Indices: 15796462--15796637 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
15796452 AGGTTGAGCA
15796462 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATG
* * * * *
15796508 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAA--ATG
* *
15796553 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCTAATG
1 --TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATG
* * *
15796601 -CCTGAGCTCGTTGAGTTCAGTCTGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGG
15796638 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 15, Indels: 16
0.78 0.11 0.12
Matches are distributed among these distances:
43 6 0.06
45 6 0.06
46 58 0.54
47 28 0.26
48 4 0.04
50 5 0.05
ACGTcount: A:0.21, C:0.19, G:0.28, T:0.32
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATG
Found at i:15796628 original size:93 final size:93
Alignment explanation
Indices: 15796459--15796630 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
15796449 GGAAGGTTGA
*
15796459 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCAAATGTCCGAACTCGTTGAGT
*
15796524 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TCAGTCCGAGTTCGTGAGATGTAACTAG
* *
15796552 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCTAATG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCAAATGTCC-GAACTCGTTGAG
*
15796616 TTCAGTCTGAGTTCG
65 TTCAGTCCGAGTTCG
15796631 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.31
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCAAATGTCCGAACTCGTTGAGT
TCAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:15799767 original size:92 final size:92
Alignment explanation
Indices: 15799610--15799793 Score: 368
Period size: 92 Copynumber: 2.0 Consensus size: 92
15799600 ATGCATTATT
15799610 GAATGGATTAGGATGTGTGTTGATTCAAGAGGGCATAAAAATATACTAAAAATGAAATTTTTTAT
1 GAATGGATTAGGATGTGTGTTGATTCAAGAGGGCATAAAAATATACTAAAAATGAAATTTTTTAT
15799675 GTTGGATTCGTGGTCTTGAGACCAATG
66 GTTGGATTCGTGGTCTTGAGACCAATG
15799702 GAATGGATTAGGATGTGTGTTGATTCAAGAGGGCATAAAAATATACTAAAAATGAAATTTTTTAT
1 GAATGGATTAGGATGTGTGTTGATTCAAGAGGGCATAAAAATATACTAAAAATGAAATTTTTTAT
15799767 GTTGGATTCGTGGTCTTGAGACCAATG
66 GTTGGATTCGTGGTCTTGAGACCAATG
15799794 TTCCAACTAG
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
92 92 1.00
ACGTcount: A:0.34, C:0.08, G:0.25, T:0.34
Consensus pattern (92 bp):
GAATGGATTAGGATGTGTGTTGATTCAAGAGGGCATAAAAATATACTAAAAATGAAATTTTTTAT
GTTGGATTCGTGGTCTTGAGACCAATG
Found at i:15804679 original size:86 final size:86
Alignment explanation
Indices: 15804578--15804749 Score: 317
Period size: 86 Copynumber: 2.0 Consensus size: 86
15804568 GAATGATTTA
* * *
15804578 TGAATGCATGATGATTGTATTTATTATTAGTAGGTAATATCATAGAAATGCATATTTGATGGTAA
1 TGAATGCATGATGATTGCATTTATTATTAGCAAGTAATATCATAGAAATGCATATTTGATGGTAA
15804643 CATGTGAAAACGTCTCGGTTG
66 CATGTGAAAACGTCTCGGTTG
15804664 TGAATGCATGATGATTGCATTTATTATTAGCAAGTAATATCATAGAAATGCATATTTGATGGTAA
1 TGAATGCATGATGATTGCATTTATTATTAGCAAGTAATATCATAGAAATGCATATTTGATGGTAA
15804729 CATGTGAAAACGTCTCGGTTG
66 CATGTGAAAACGTCTCGGTTG
15804750 AGGTCGATAA
Statistics
Matches: 83, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
86 83 1.00
ACGTcount: A:0.33, C:0.09, G:0.22, T:0.36
Consensus pattern (86 bp):
TGAATGCATGATGATTGCATTTATTATTAGCAAGTAATATCATAGAAATGCATATTTGATGGTAA
CATGTGAAAACGTCTCGGTTG
Found at i:15805827 original size:27 final size:26
Alignment explanation
Indices: 15805797--15805866 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 26
15805787 CATTGACTTG
15805797 TAAAATTACCAAAGTACCCCCGATTTA
1 TAAAATTACCAAA-TACCCCCGATTTA
* * *
15805824 TAAAATTACCCAAATATCCTCGATTTG
1 TAAAATTA-CCAAATACCCCCGATTTA
15805851 TAAAATTACCGAAATA
1 TAAAATTACC-AAATA
15805867 AGATAGAATT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
26 2 0.05
27 31 0.82
28 5 0.13
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (26 bp):
TAAAATTACCAAATACCCCCGATTTA
Found at i:15805901 original size:27 final size:27
Alignment explanation
Indices: 15805871--15805959 Score: 151
Period size: 27 Copynumber: 3.3 Consensus size: 27
15805861 GAAATAAGAT
15805871 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* *
15805898 AGAATTACCATTTTACCCTTGATTTCC
1 AGAATTACCATTTTACCCTCGATTTAC
15805925 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*
15805952 AAAATTAC
1 AGAATTAC
15805960 TGAAATACCC
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCGATTTAC
Found at i:15805968 original size:27 final size:27
Alignment explanation
Indices: 15805884--15806050 Score: 138
Period size: 27 Copynumber: 6.2 Consensus size: 27
15805874 ATTACCATTT
* ***
15805884 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * * ***
15805911 TACCCTTGATTTCCAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAA
**
15805938 TACCCTCGATTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* *
15805965 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
** *
15805992 TACCCTCGATCAATAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* **
15806019 TACCC-CTGGTTTGTAAAATTACCAAAA
1 TACCCTC-GATTTACAAAATTACCAAAA
15806046 TACCC
1 TACCC
15806051 CTTATTTGTG
Statistics
Matches: 116, Mismatches: 23, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
26 1 0.01
27 115 0.99
ACGTcount: A:0.37, C:0.25, G:0.07, T:0.31
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCAAAA
Found at i:15805969 original size:54 final size:54
Alignment explanation
Indices: 15805871--15806023 Score: 164
Period size: 54 Copynumber: 2.8 Consensus size: 54
15805861 GAAATAAGAT
* ** *
15805871 AGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTTGATTTCC
1 AGAATTACCATTTTACCCTCGATTTACAAAATTACCATAATACCCTTGATTTAC
* *
15805925 AGAATTACCATTTTACCCTCGATTTACAAAATTACTGA-AATACCCTTGGTTTAC
1 AGAATTACCATTTTACCCTCGATTTACAAAATTAC-CATAATACCCTTGATTTAC
* *** ** * *
15805979 AAAATTACCAAAATACCCTCGATCAATAAAATTACCAAAATACCC
1 AGAATTACCATTTTACCCTCGATTTACAAAATTACCATAATACCC
15806024 CTGGTTTGTA
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
53 1 0.01
54 81 0.98
55 1 0.01
ACGTcount: A:0.37, C:0.25, G:0.07, T:0.32
Consensus pattern (54 bp):
AGAATTACCATTTTACCCTCGATTTACAAAATTACCATAATACCCTTGATTTAC
Found at i:15806051 original size:27 final size:27
Alignment explanation
Indices: 15805940--15806079 Score: 129
Period size: 27 Copynumber: 5.1 Consensus size: 27
15805930 TACCATTTTA
* **
15805940 CCCTCGATTTACAAAATTACTGAAATAC
1 CCCT-GATTTATAAAATTACCAAAATAC
* * *
15805968 CCTTGGTTTACAAAATTACCAAAATA-
1 CCCTGATTTATAAAATTACCAAAATAC
**
15805994 CCCTCGATCAATAAAATTACCAAAATAC
1 CCCT-GATTTATAAAATTACCAAAATAC
* *
15806022 CCCTGGTTTGTAAAATTACCAAAATAC
1 CCCTGATTTATAAAATTACCAAAATAC
* * * *
15806049 CCCTTATTTGTGAAATTACCGAAATAC
1 CCCTGATTTATAAAATTACCAAAATAC
15806076 CCCT
1 CCCT
15806080 ATAGGGTAGA
Statistics
Matches: 93, Mismatches: 17, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
26 3 0.03
27 83 0.89
28 7 0.08
ACGTcount: A:0.39, C:0.25, G:0.08, T:0.29
Consensus pattern (27 bp):
CCCTGATTTATAAAATTACCAAAATAC
Found at i:15806079 original size:54 final size:54
Alignment explanation
Indices: 15805938--15806050 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
15805928 ATTACCATTT
** * * *
15805938 TACCCTCGATTTACAAAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATCAATAAAATTACCGAAATACCCCTGGTTTACAAAATTACCAAAA
* **
15805992 TACCCTCGATCAATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAA
1 TACCCTCGATCAATAAAATTACCGAAATACCCCTGGTTTACAAAATTACCAAAA
15806046 TACCC
1 TACCC
15806051 CTTATTTGTG
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.41, C:0.25, G:0.07, T:0.27
Consensus pattern (54 bp):
TACCCTCGATCAATAAAATTACCGAAATACCCCTGGTTTACAAAATTACCAAAA
Found at i:15806092 original size:27 final size:27
Alignment explanation
Indices: 15806062--15806203 Score: 187
Period size: 27 Copynumber: 5.3 Consensus size: 27
15806052 TTATTTGTGA
*
15806062 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTATAGGGTAG
*
15806089 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTATAGGGTAG
*
15806116 AATTACTGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCTTATAGGGTAG
* *
15806143 AATTACCGAAATACCCGTGTAGGGTAG
1 AATTACCGAAATACCCTTATAGGGTAG
* * * *
15806170 AATTA-CTAAGATACCCTTGTGGGGTAA
1 AATTACCGAA-ATACCCTTATAGGGTAG
15806197 AATTACC
1 AATTACC
15806204 ATTTTGCCCT
Statistics
Matches: 102, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
26 3 0.03
27 98 0.96
28 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCTTATAGGGTAG
Found at i:15806093 original size:81 final size:82
Alignment explanation
Indices: 15806008--15806204 Score: 206
Period size: 81 Copynumber: 2.4 Consensus size: 82
15805998 CGATCAATAA
** **
15806008 AATTACCAAAATACCCCTGGT-TTGTAAAATTACCAAAATACCCCTTAT-TTGT-GAAATTACCG
1 AATTACCAAAATACCCCTGGTAGGGTAAAATTACCAAAATA-CCCTTATAGGGTAG-AATTACCG
15806070 AAATACCCCTATAGGGTAG
64 AAATACCCCTATAGGGTAG
* * * **
15806089 AATTACCGAAATA-CCCTTGTAGGGTAGAATTACTGAAATACCCTTATAGGGTAGAATTACCGAA
1 AATTACCAAAATACCCCTGGTAGGGTAAAATTACCAAAATACCCTTATAGGGTAGAATTACCGAA
* *
15806153 ATACCCGTGTAGGGTAG
66 ATACCCCTATAGGGTAG
* * * *
15806170 AATTACTAAGATA-CCCTTGTGGGGTAAAATTACCA
1 AATTACCAAAATACCCCTGGTAGGGTAAAATTACCA
15806205 TTTTGCCCTT
Statistics
Matches: 95, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
80 13 0.14
81 81 0.85
82 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.27
Consensus pattern (82 bp):
AATTACCAAAATACCCCTGGTAGGGTAAAATTACCAAAATACCCTTATAGGGTAGAATTACCGAA
ATACCCCTATAGGGTAG
Found at i:15806176 original size:54 final size:54
Alignment explanation
Indices: 15806062--15806203 Score: 214
Period size: 54 Copynumber: 2.6 Consensus size: 54
15806052 TTATTTGTGA
* * *
15806062 AATTACCGAAATACCCCTATAGGGTAGAATTACCGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCTTATAGGGTAGAATTACCGAAATACCCGTGTAGGGTAG
15806116 AATTACTGAAATACCCTTATAGGGTAGAATTACCGAAATACCCGTGTAGGGTAG
1 AATTACTGAAATACCCTTATAGGGTAGAATTACCGAAATACCCGTGTAGGGTAG
* * *
15806170 AATTACT-AAGATACCCTTGTGGGGTAAAATTACC
1 AATTACTGAA-ATACCCTTATAGGGTAGAATTACC
15806204 ATTTTGCCCT
Statistics
Matches: 81, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 2 0.02
54 79 0.98
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.26
Consensus pattern (54 bp):
AATTACTGAAATACCCTTATAGGGTAGAATTACCGAAATACCCGTGTAGGGTAG
Found at i:15806595 original size:6 final size:6
Alignment explanation
Indices: 15806586--15806667 Score: 71
Period size: 6 Copynumber: 13.3 Consensus size: 6
15806576 TTGCATTCAC
* *
15806586 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTTTG ATTCTG ATTCT-
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
15806634 ATCACCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
15806668 AATGTTTCTT
Statistics
Matches: 62, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
5 5 0.08
6 48 0.77
7 6 0.10
8 3 0.05
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:15806617 original size:25 final size:25
Alignment explanation
Indices: 15806589--15806659 Score: 85
Period size: 25 Copynumber: 2.8 Consensus size: 25
15806579 CATTCACATT
15806589 CTGATTCTGATTCTG-TTACCTGAT-A-
1 CTGATTCTGATTCTGATT--CT-ATCAC
*
15806614 CTGATTTTGATTCTGATTCTATCAC
1 CTGATTCTGATTCTGATTCTATCAC
15806639 CTGATTCTGATTCTGATTCTA
1 CTGATTCTGATTCTGATTCTA
15806660 GTTCTGATAA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
23 2 0.05
24 3 0.07
25 34 0.83
26 2 0.05
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.46
Consensus pattern (25 bp):
CTGATTCTGATTCTGATTCTATCAC
Found at i:15806628 original size:31 final size:31
Alignment explanation
Indices: 15806586--15806658 Score: 110
Period size: 31 Copynumber: 2.4 Consensus size: 31
15806576 TTGCATTCAC
* *
15806586 ATTCTGATTCTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTATCACCTGATACTG
* *
15806617 ATTTTGATTCTGATTCTATCACCTGATTCTG
1 ATTCTGATTCTGATTCTATCACCTGATACTG
15806648 ATTCTGATTCT
1 ATTCTGATTCT
15806659 AGTTCTGATA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTATCACCTGATACTG
Found at i:15808648 original size:27 final size:27
Alignment explanation
Indices: 15808617--15808867 Score: 115
Period size: 27 Copynumber: 9.6 Consensus size: 27
15808607 TTAGTTTACC
* * *
15808617 AAATTACTAAAATACCCTTGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
15808644 AAATTACCAAAGTACCCCCGATTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
15808671 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* ** *
15808698 AAATTGCTGAAATA----AGA----TA
1 AAATTACCAAAATACCCTCGATTTGTA
* *** *
15808717 GAATTACCATTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
** *** **
15808744 TTATTACCATTTTACCCTCGATTTAAA
1 AAATTACCAAAATACCCTCGATTTGTA
** * * **
15808771 AAATTACTGAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
* ***
15808798 AAATTACCAAAATACCCTTGATCAATA
1 AAATTACCAAAATACCCTCGATTTGTA
*
15808825 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
15808852 AAATTACCAAAATACC
1 AAATTACCAAAATACC
15808868 TCCATTTTAC
Statistics
Matches: 168, Mismatches: 47, Indels: 18
0.72 0.20 0.08
Matches are distributed among these distances:
19 9 0.05
23 4 0.02
27 155 0.92
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:15808804 original size:54 final size:54
Alignment explanation
Indices: 15808756--15808867 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
15808746 ATTACCATTT
* ** *
15808756 TACCCTCGATTTAA-AAAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGA-TCAATAAAATTACCAAAATACCCCTGGTTTACAAAATTACCAAAA
* **
15808810 TACCCTTGATCAATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAA
1 TACCCTCGATCAATAAAATTACCAAAATACCCCTGGTTTACAAAATTACCAAAA
15808864 TACC
1 TACC
15808868 TCCATTTTAC
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
53 3 0.06
54 47 0.94
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.29
Consensus pattern (54 bp):
TACCCTCGATCAATAAAATTACCAAAATACCCCTGGTTTACAAAATTACCAAAA
Found at i:15808907 original size:27 final size:27
Alignment explanation
Indices: 15808869--15808923 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
15808859 CAAAATACCT
* *
15808869 CCATTTTACCCTCGATTTATAGAATTA
1 CCATTTTACCCTCGATTTAAAAAATTA
15808896 CCATTTTACCCTCGATTTAAAAAATTA
1 CCATTTTACCCTCGATTTAAAAAATTA
15808923 C
1 C
15808924 TGAAATACCC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.33, C:0.24, G:0.05, T:0.38
Consensus pattern (27 bp):
CCATTTTACCCTCGATTTAAAAAATTA
Found at i:15808932 original size:27 final size:27
Alignment explanation
Indices: 15808875--15809013 Score: 118
Period size: 27 Copynumber: 5.1 Consensus size: 27
15808865 ACCTCCATTT
* * * ***
15808875 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTTGATTTAAAAAATTACCAAAA
* **
15808902 TACCCTCGATTTAAAAAATTACTGAAA
1 TACCCTTGATTTAAAAAATTACCAAAA
* *
15808929 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGATTTAAAAAATTACCAAAA
*
15808956 TACCCTTGA-TCAATAAAATTACCAAAA
1 TACCCTTGATTTAA-AAAATTACCAAAA
* * **
15808983 TACCCCTGGTTTGTAAAATTACCAAAA
1 TACCCTTGATTTAAAAAATTACCAAAA
15809010 TACC
1 TACC
15809014 TCTAATTTGT
Statistics
Matches: 90, Mismatches: 20, Indels: 4
0.79 0.18 0.04
Matches are distributed among these distances:
26 2 0.02
27 87 0.97
28 1 0.01
ACGTcount: A:0.40, C:0.22, G:0.07, T:0.31
Consensus pattern (27 bp):
TACCCTTGATTTAAAAAATTACCAAAA
Found at i:15808940 original size:146 final size:146
Alignment explanation
Indices: 15808723--15809015 Score: 568
Period size: 146 Copynumber: 2.0 Consensus size: 146
15808713 GATAGAATTA
**
15808723 CCATTTTACCCTCGATTTATATTATTACCATTTTACCCTCGATTTAAAAAATTACTGAAATACCC
1 CCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTAAAAAATTACTGAAATACCC
15808788 TTGGTTTACAAAATTACCAAAATACCCTTGATCAATAAAATTACCAAAATACCCCTGGTTTGTAA
66 TTGGTTTACAAAATTACCAAAATACCCTTGATCAATAAAATTACCAAAATACCCCTGGTTTGTAA
15808853 AATTACCAAAATACCT
131 AATTACCAAAATACCT
15808869 CCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTAAAAAATTACTGAAATACCC
1 CCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTAAAAAATTACTGAAATACCC
15808934 TTGGTTTACAAAATTACCAAAATACCCTTGATCAATAAAATTACCAAAATACCCCTGGTTTGTAA
66 TTGGTTTACAAAATTACCAAAATACCCTTGATCAATAAAATTACCAAAATACCCCTGGTTTGTAA
15808999 AATTACCAAAATACCT
131 AATTACCAAAATACCT
15809015 C
1 C
15809016 TAATTTGTGA
Statistics
Matches: 145, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
146 145 1.00
ACGTcount: A:0.38, C:0.23, G:0.06, T:0.33
Consensus pattern (146 bp):
CCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTAAAAAATTACTGAAATACCC
TTGGTTTACAAAATTACCAAAATACCCTTGATCAATAAAATTACCAAAATACCCCTGGTTTGTAA
AATTACCAAAATACCT
Found at i:15808949 original size:54 final size:54
Alignment explanation
Indices: 15808902--15809013 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
15808892 ATTACCATTT
* ** *
15808902 TACCCTCGATTTAA-AAAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGA-TCAATAAAATTACCAAAATACCCCTGGTTTACAAAATTACCAAAA
* **
15808956 TACCCTTGATCAATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAA
1 TACCCTCGATCAATAAAATTACCAAAATACCCCTGGTTTACAAAATTACCAAAA
15809010 TACC
1 TACC
15809014 TCTAATTTGT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
53 3 0.06
54 47 0.94
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.29
Consensus pattern (54 bp):
TACCCTCGATCAATAAAATTACCAAAATACCCCTGGTTTACAAAATTACCAAAA
Found at i:15808973 original size:119 final size:119
Alignment explanation
Indices: 15808750--15808986 Score: 287
Period size: 119 Copynumber: 2.0 Consensus size: 119
15808740 TATATTATTA
* * * *
15808750 CCATTTTACCCTCGATTTAAAAAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAATACCC
1 CCATTTTACCCTCGATTTAAAAAATTACTCAAATACCCTCGATTTAAAAAATTACCAAAATACCC
* * ***
15808815 TTGATCAATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCT
66 TTGATCAACAAAATTACCAAAATACCCCTGATCAATAAAATTACCAAAATACCT
* * ** **
15808869 CCATTTTACCCTCGATTTATAGAATTAC-CATTTTACCCTCGATTTAAAAAATTACTGAAATACC
1 CCATTTTACCCTCGATTTAAAAAATTACTCA-AATACCCTCGATTTAAAAAATTACCAAAATACC
* ** *
15808933 CTTGGTTTACAAAATTACCAAAATACCCTTGATCAATAAAATTACCAAAATACC
65 CTTGATCAACAAAATTACCAAAATACCCCTGATCAATAAAATTACCAAAATACC
15808987 CCTGGTTTGT
Statistics
Matches: 98, Mismatches: 19, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
118 1 0.01
119 97 0.99
ACGTcount: A:0.40, C:0.23, G:0.06, T:0.31
Consensus pattern (119 bp):
CCATTTTACCCTCGATTTAAAAAATTACTCAAATACCCTCGATTTAAAAAATTACCAAAATACCC
TTGATCAACAAAATTACCAAAATACCCCTGATCAATAAAATTACCAAAATACCT
Found at i:15809022 original size:27 final size:26
Alignment explanation
Indices: 15808969--15809041 Score: 83
Period size: 27 Copynumber: 2.7 Consensus size: 26
15808959 CCTTGATCAA
*
15808969 TAAAATTACCAAAATACCCCTGGTTTG
1 TAAAATTACCAAAATA-CCCTGATTTG
*
15808996 TAAAATTACCAAAATACCTCTAATTTG
1 TAAAATTACCAAAATACC-CTGATTTG
* * *
15809023 TGAAATTATCGAAATACCC
1 TAAAATTACCAAAATACCC
15809042 CTGTAAGGTA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
26 3 0.08
27 37 0.93
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (26 bp):
TAAAATTACCAAAATACCCTGATTTG
Found at i:15809029 original size:54 final size:54
Alignment explanation
Indices: 15808916--15809044 Score: 143
Period size: 54 Copynumber: 2.4 Consensus size: 54
15808906 CTCGATTTAA
* * *
15808916 AAAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAATACCCTTGATCAAT
1 AAAATTACCGAAATACCCCTGGTTTACAAAATTACCAAAATACCCTTAATCAAT
* ** ***
15808970 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATA-CCTCTAATTTGT
1 AAAATTACCGAAATACCCCTGGTTTACAAAATTACCAAAATACCCT-TAATCAAT
* *
15809024 GAAATTATCGAAATACCCCTG
1 AAAATTACCGAAATACCCCTG
15809045 TAAGGTAGAA
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
53 3 0.05
54 59 0.95
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (54 bp):
AAAATTACCGAAATACCCCTGGTTTACAAAATTACCAAAATACCCTTAATCAAT
Found at i:15809056 original size:27 final size:27
Alignment explanation
Indices: 15809026--15809167 Score: 178
Period size: 27 Copynumber: 5.3 Consensus size: 27
15809016 TAATTTGTGA
* *
15809026 AATTATCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCTTGTAAGGTAG
* *
15809053 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAAGGTAG
* *
15809080 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAAGGTAG
*
15809107 AATTACCGAAATACCCCTGT-AGGATAG
1 AATTACCGAAATACCCTTGTAAGG-TAG
* * *
15809134 AATTACCGAGATACCCTTGTGAGGTAA
1 AATTACCGAAATACCCTTGTAAGGTAG
15809161 AATTACC
1 AATTACC
15809168 ATTTTGCCCC
Statistics
Matches: 103, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
26 2 0.02
27 98 0.95
28 3 0.03
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAAGGTAG
Found at i:15809581 original size:6 final size:6
Alignment explanation
Indices: 15809550--15809637 Score: 74
Period size: 6 Copynumber: 14.3 Consensus size: 6
15809540 TTGCATTCAC
* *
15809550 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
15809599 -TCACCTG ATTCTG ATTTTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
15809638 AATGTTTCTT
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 4 0.06
6 53 0.80
7 7 0.11
8 2 0.03
ACGTcount: A:0.18, C:0.17, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:15809585 original size:31 final size:31
Alignment explanation
Indices: 15809550--15809628 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
15809540 TTGCATTCAC
* *
15809550 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
*
15809581 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
*
15809612 ATTTTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
15809629 AGTTCTGATA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTG
Found at i:15809637 original size:18 final size:18
Alignment explanation
Indices: 15809550--15809637 Score: 74
Period size: 19 Copynumber: 4.8 Consensus size: 18
15809540 TTGCATTCAC
*
15809550 ATTCTGATTTTGATTCTG
1 ATTCTGATTCTGATTCTG
*
15809568 -TTACCTGATACTGATTCTG
1 ATT--CTGATTCTGATTCTG
*
15809587 ATTCTGATTCTG-TCACCTG
1 ATTCTGATTCTGAT--TCTG
*
15809606 ATTCTGATTTTGATTCTG
1 ATTCTGATTCTGATTCTG
15809624 ATTCT-AGTTCTGAT
1 ATTCTGA-TTCTGAT
15809638 AATGTTTCTT
Statistics
Matches: 56, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
17 4 0.07
18 22 0.39
19 27 0.48
20 3 0.05
ACGTcount: A:0.18, C:0.17, G:0.16, T:0.49
Consensus pattern (18 bp):
ATTCTGATTCTGATTCTG
Found at i:15816767 original size:24 final size:24
Alignment explanation
Indices: 15816716--15816880 Score: 215
Period size: 24 Copynumber: 6.8 Consensus size: 24
15816706 ACTTTATCAT
*
15816716 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
15816741 ATAACTGGGGAAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
15816765 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
15816789 ATAACTGGGGCATAAGCCCTTTTTTA
1 ATAACTGGGGCATAAGCCC--TTTTA
* * *
15816815 ATAACTAGGGTATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
15816839 ATAACTAGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
15816863 ATAACTGGGGCATAAGCC
1 ATAACTGGGGCATAAGCC
15816881 AAAAATCCAA
Statistics
Matches: 124, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
24 91 0.73
25 12 0.10
26 21 0.17
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:15816817 original size:74 final size:74
Alignment explanation
Indices: 15816736--15816880 Score: 236
Period size: 74 Copynumber: 2.0 Consensus size: 74
15816726 GCCTAGCCTC
* * *
15816736 TTTTAATAACTGGGGAAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCA
1 TTTTAATAACTAGGGAAAAAGCCCTTTTAATAACTAGGGCATAAGCCCTTTTAATAACTGGGGCA
15816801 TAAGCCCTT
66 TAAGCCCTT
* * *
15816810 TTTTAATAACTAGGGTATAAGCCCTTTTGATAACTAGGGCATAAGCCCTTTTAATAACTGGGGCA
1 TTTTAATAACTAGGGAAAAAGCCCTTTTAATAACTAGGGCATAAGCCCTTTTAATAACTGGGGCA
15816875 TAAGCC
66 TAAGCC
15816881 AAAAATCCAA
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
74 65 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (74 bp):
TTTTAATAACTAGGGAAAAAGCCCTTTTAATAACTAGGGCATAAGCCCTTTTAATAACTGGGGCA
TAAGCCCTT
Found at i:15816936 original size:20 final size:20
Alignment explanation
Indices: 15816911--15816977 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
15816901 TTATGAATAC
15816911 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
15816931 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
15816951 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
15816971 ACCATGT
1 ATCATGT
15816978 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:15816942 original size:11 final size:11
Alignment explanation
Indices: 15816911--15816966 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
15816901 TTATGAATAC
15816911 ATCATGTGCAT
1 ATCATGTGCAT
*
15816922 ATCA--TACAT
1 ATCATGTGCAT
15816931 ATCATGTGCAT
1 ATCATGTGCAT
*
15816942 ATCA--TACAT
1 ATCATGTGCAT
*
15816951 GTCATGTGCAT
1 ATCATGTGCAT
15816962 ATCAT
1 ATCAT
15816967 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:15817138 original size:20 final size:20
Alignment explanation
Indices: 15817113--15817179 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
15817103 TTATGAATAC
15817113 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
15817133 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
15817153 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
15817173 ACCATGT
1 ATCATGT
15817180 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:15817144 original size:11 final size:11
Alignment explanation
Indices: 15817113--15817168 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
15817103 TTATGAATAC
15817113 ATCATGTGCAT
1 ATCATGTGCAT
*
15817124 ATCA--TACAT
1 ATCATGTGCAT
15817133 ATCATGTGCAT
1 ATCATGTGCAT
*
15817144 ATCA--TACAT
1 ATCATGTGCAT
*
15817153 GTCATGTGCAT
1 ATCATGTGCAT
15817164 ATCAT
1 ATCAT
15817169 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:15832966 original size:25 final size:25
Alignment explanation
Indices: 15832932--15832981 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
15832922 GAGGGATTGA
15832932 AAGCAATTGGGAAAGGAAACATCGG
1 AAGCAATTGGGAAAGGAAACATCGG
15832957 AAGCAATTGGGAAAGGAAACATCGG
1 AAGCAATTGGGAAAGGAAACATCGG
15832982 TTACTGAGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.12, G:0.32, T:0.12
Consensus pattern (25 bp):
AAGCAATTGGGAAAGGAAACATCGG
Found at i:15841011 original size:40 final size:40
Alignment explanation
Indices: 15840934--15841111 Score: 263
Period size: 40 Copynumber: 4.5 Consensus size: 40
15840924 AGACCAAGTA
* * *
15840934 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCACTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
15840973 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
15841013 CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
15841053 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
15841093 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
15841112 TTACCATTCG
Statistics
Matches: 129, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
39 15 0.12
40 114 0.88
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:15845935 original size:48 final size:46
Alignment explanation
Indices: 15845873--15846041 Score: 180
Period size: 48 Copynumber: 3.6 Consensus size: 46
15845863 TGATATGTGT
*
15845873 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATTTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGATA--TAA
* * *
15845921 GCCAGTGTAAGACATGTCTGGGACATGCATC-GACATTGAGACGA-AA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAG-CATCGAGA-TATAA
* * *
15845967 GCTAGTGTAAGACATGTCTGGGTCATGCATCAGCTTCGCGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGATAT--AA
* * *
15846015 GCTAGTGTAAAACCTGTCTAGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
15846042 ATGTCAGCTT
Statistics
Matches: 101, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
45 1 0.01
46 36 0.36
47 2 0.02
48 61 0.60
49 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.25
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGATATAA
Found at i:15846740 original size:18 final size:18
Alignment explanation
Indices: 15846713--15846750 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
15846703 AAGATAGTCT
*
15846713 TTCATGGATGTAGAATTG
1 TTCATAGATGTAGAATTG
*
15846731 TTCATAGATGTGGAATTG
1 TTCATAGATGTAGAATTG
15846749 TT
1 TT
15846751 GGCATGGCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.26, C:0.05, G:0.26, T:0.42
Consensus pattern (18 bp):
TTCATAGATGTAGAATTG
Found at i:15851572 original size:43 final size:42
Alignment explanation
Indices: 15851525--15851672 Score: 144
Period size: 40 Copynumber: 3.5 Consensus size: 42
15851515 TGTTCTCGTG
* * *
15851525 TAAGACCACATCTGGGACGTTGGTATCTATATGTGATTACGTA
1 TAAGACCACGTTTGGGACGTTGGCATC-ATATGTGATTACGTA
* * * *
15851568 TAAGACCATG-TTGGGACATTGGCATCATATTTGATT-CGTG
1 TAAGACCACGTTTGGGACGTTGGCATCATATGTGATTACGTA
* *
15851608 TAAGACC-TGTTTGGGACAG-TGGCATCGATATGTGA-TAGCATA
1 TAAGACCACGTTTGGGAC-GTTGGCATC-ATATGTGATTA-CGTA
15851650 TAAGACCACGTTTGGGACGTTGG
1 TAAGACCACGTTTGGGACGTTGG
15851673 TATTGTACAG
Statistics
Matches: 86, Mismatches: 12, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
39 2 0.02
40 25 0.29
41 16 0.19
42 23 0.27
43 20 0.23
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (42 bp):
TAAGACCACGTTTGGGACGTTGGCATCATATGTGATTACGTA
Found at i:15854291 original size:24 final size:24
Alignment explanation
Indices: 15854264--15854350 Score: 93
Period size: 24 Copynumber: 3.6 Consensus size: 24
15854254 AGAAATTTCA
*
15854264 GCACTATGTGTGCGAGGTTATGCG
1 GCACTATGTGTGCGAGGATATGCG
* ** **
15854288 GCACTATGTGTGCAAAAACTATATG
1 GCACTATGTGTGCGAGGA-TATGCG
* *
15854313 GCAGTATGTGTGCGAGGAAATGCG
1 GCACTATGTGTGCGAGGATATGCG
15854337 GCACTATGTGTGCG
1 GCACTATGTGTGCG
15854351 GACCTTTAAA
Statistics
Matches: 48, Mismatches: 14, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
24 30 0.62
25 18 0.38
ACGTcount: A:0.24, C:0.16, G:0.33, T:0.26
Consensus pattern (24 bp):
GCACTATGTGTGCGAGGATATGCG
Found at i:15859413 original size:27 final size:27
Alignment explanation
Indices: 15859201--15859531 Score: 414
Period size: 27 Copynumber: 12.3 Consensus size: 27
15859191 CCAAAGTACT
15859201 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
15859228 CTCGATTTACAGAATTACTGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* ** * *
15859255 TTCGATTTTTAAAATTATCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
15859282 CTCAATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* **
15859309 CTCAATTTACAGAATTACTATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
15859336 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
**
15859363 CTC-AGTTTACAGAATTACTATTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
*
15859390 CTTGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
** *
15859417 CTCGATTTGTAAAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* * *
15859444 CTTGATTTACAGAATTACTGGTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
15859471 CTC-AGTTTACAAAATTATCGTTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
**
15859498 CTCGATTTACAGAATTACTATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
15859525 CTTGATT
1 CTCGATT
15859532 GTGAAATTAT
Statistics
Matches: 257, Mismatches: 43, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
26 2 0.01
27 253 0.98
28 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
CTCGATTTACAGAATTACCGTTTTACC
Found at i:15859566 original size:27 final size:27
Alignment explanation
Indices: 15859543--15859731 Score: 243
Period size: 27 Copynumber: 7.0 Consensus size: 27
15859533 TGAAATTATT
* *
15859543 GAAACACCCCTGTAGGGTAGAATTTCC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
15859570 GAAATACCCCTATAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
15859597 GAAATACCCTTATAGGATAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
15859624 AAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
15859651 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
15859678 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
15859705 GAGATACCCTTGTGGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
15859732 ATTTTGCCCC
Statistics
Matches: 140, Mismatches: 22, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 140 1.00
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:15859967 original size:27 final size:26
Alignment explanation
Indices: 15859929--15860012 Score: 96
Period size: 27 Copynumber: 3.2 Consensus size: 26
15859919 ACGAAGGAAG
15859929 TGTTCTGGTGGCTATGCCACAAATATC
1 TGTTCTGGTGGCTATGCCAC-AATATC
*
15859956 TGTTCTGGTGGCTCTGCCACAATATC
1 TGTTCTGGTGGCTATGCCACAATATC
* * * * *
15859982 TGTATTTGATGACTCTGTCACAATATC
1 TGT-TCTGGTGGCTATGCCACAATATC
15860009 TGTT
1 TGTT
15860013 GACTGATCGA
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.20, C:0.21, G:0.20, T:0.38
Consensus pattern (26 bp):
TGTTCTGGTGGCTATGCCACAATATC
Found at i:15860128 original size:22 final size:22
Alignment explanation
Indices: 15860103--15860158 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
15860093 GTTATTAATA
15860103 GCTTTGTGCCAACCTAAATATG
1 GCTTTGTGCCAACCTAAATATG
* * * *
15860125 GCTTTGTGCCATCTTGACTATG
1 GCTTTGTGCCAACCTAAATATG
*
15860147 GCTTCGTGCCAA
1 GCTTTGTGCCAA
15860159 ACGTATTTAC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (22 bp):
GCTTTGTGCCAACCTAAATATG
Found at i:15860345 original size:27 final size:27
Alignment explanation
Indices: 15860323--15860396 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
15860313 TAGGTGGGTT
*
15860323 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
15860350 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* **
15860377 TGTCATGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
15860397 CAGCCATGCT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
26 5 0.12
27 35 0.85
28 1 0.02
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.38
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:15860523 original size:6 final size:6
Alignment explanation
Indices: 15860514--15860633 Score: 81
Period size: 6 Copynumber: 19.8 Consensus size: 6
15860504 TTGCATTCAC
* * *
15860514 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG -TTACTA ATAT-TG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATT-CTG AT-TCTG
* *
15860563 ATTCTG ATTCTG ATTCTG -TTACTA ATAT-TG ATTCGG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG
*
15860611 -TTACTA ATTCTG ATTCTG ATTCT
1 ATT-CTG ATTCTG ATTCTG ATTCT
15860634 CATTTTGGTT
Statistics
Matches: 89, Mismatches: 12, Indels: 26
0.70 0.09 0.20
Matches are distributed among these distances:
5 9 0.10
6 71 0.80
7 6 0.07
8 3 0.03
ACGTcount: A:0.22, C:0.16, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:15860544 original size:19 final size:18
Alignment explanation
Indices: 15860520--15860568 Score: 64
Period size: 19 Copynumber: 2.7 Consensus size: 18
15860510 TCACATTCTG
15860520 ATTCTGATTCTGTCACGTA
1 ATTCTGATTCTGTCAC-TA
*
15860539 ATTCTGATTCTGTTACTA
1 ATTCTGATTCTGTCACTA
15860557 ATAT-TGATTCTG
1 AT-TCTGATTCTG
15860569 ATTCTGATTC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 12 0.43
19 16 0.57
ACGTcount: A:0.22, C:0.16, G:0.14, T:0.47
Consensus pattern (18 bp):
ATTCTGATTCTGTCACTA
Found at i:15860574 original size:30 final size:30
Alignment explanation
Indices: 15860539--15860633 Score: 165
Period size: 30 Copynumber: 3.2 Consensus size: 30
15860529 CTGTCACGTA
15860539 ATTCTGATTCTGTTACTAATATTGATTCTG
1 ATTCTGATTCTGTTACTAATATTGATTCTG
*
15860569 ATTCTGATTCTGTTACTAATATTGATTCGG
1 ATTCTGATTCTGTTACTAATATTGATTCTG
15860599 ATTCTGATTCTGTTACTAAT-TCTGATTCTG
1 ATTCTGATTCTGTTACTAATAT-TGATTCTG
15860629 ATTCT
1 ATTCT
15860634 CATTTTGGTT
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
29 1 0.02
30 61 0.98
ACGTcount: A:0.22, C:0.15, G:0.14, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGTTACTAATATTGATTCTG
Found at i:15860620 original size:24 final size:25
Alignment explanation
Indices: 15860514--15860633 Score: 102
Period size: 24 Copynumber: 4.7 Consensus size: 25
15860504 TTGCATTCAC
* *
15860514 ATTCTGATTCTGATTCTGTCACGTA
1 ATTCTGATTCTGATTCTGTTACATA
** * *
15860539 ATTCTGATTCTG-TTACTAATA-TTG
1 ATTCTGATTCTGATT-CTGTTACATA
15860563 ATTCTGATTCTGATTCTGTTACTAATA
1 ATTCTGATTCTGATTCTGTTAC--ATA
*
15860590 TTGATTCGGATTCTGATTCTGTTAC-TA
1 ---ATTCTGATTCTGATTCTGTTACATA
15860617 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
15860634 CATTTTGGTT
Statistics
Matches: 76, Mismatches: 11, Indels: 17
0.73 0.11 0.16
Matches are distributed among these distances:
24 35 0.46
25 17 0.22
27 3 0.04
30 21 0.28
ACGTcount: A:0.22, C:0.16, G:0.14, T:0.48
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTTACATA
Found at i:15863254 original size:38 final size:38
Alignment explanation
Indices: 15863211--15863285 Score: 141
Period size: 38 Copynumber: 2.0 Consensus size: 38
15863201 TTCTCATTTT
15863211 TGTCTCCCCTTTTGCCAAAACTAAACAAGAAATTGAAA
1 TGTCTCCCCTTTTGCCAAAACTAAACAAGAAATTGAAA
*
15863249 TGTCTCCCCTTTTGCCGAAACTAAACAAGAAATTGAA
1 TGTCTCCCCTTTTGCCAAAACTAAACAAGAAATTGAA
15863286 GAAAGAACAC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.37, C:0.24, G:0.12, T:0.27
Consensus pattern (38 bp):
TGTCTCCCCTTTTGCCAAAACTAAACAAGAAATTGAAA
Found at i:15872653 original size:36 final size:36
Alignment explanation
Indices: 15872606--15873026 Score: 842
Period size: 36 Copynumber: 11.7 Consensus size: 36
15872596 GATTTGGCAA
15872606 ATGTTTATATAAATGTTAATACATGAAGTCCACTTC
1 ATGTTTATATAAATGTTAATACATGAAGTCCACTTC
15872642 ATGTTTATATAAATGTTAATACATGAAGTCCACTTC
1 ATGTTTATATAAATGTTAATACATGAAGTCCACTTC
15872678 ATGTTTATATAAATGTTAATACATGAAGTCCACTTC
1 ATGTTTATATAAATGTTAATACATGAAGTCCACTTC
15872714 ATGTTTATATAAATGTTAATACATGAAGTCCACTTC
1 ATGTTTATATAAATGTTAATACATGAAGTCCACTTC
15872750 ATGTTTATATAAATGTTAATACATGAAGTCCACTTC
1 ATGTTTATATAAATGTTAATACATGAAGTCCACTTC
15872786 ATGTTTATATAAATGTTAATACATGAAGTCCACTTC
1 ATGTTTATATAAATGTTAATACATGAAGTCCACTTC
15872822 ATGTTTATATAAATGTTAATACATGAAGTCCACTTC
1 ATGTTTATATAAATGTTAATACATGAAGTCCACTTC
15872858 ATGTTTATATAAATGTTAATACATGAAGTCCACTTC
1 ATGTTTATATAAATGTTAATACATGAAGTCCACTTC
15872894 ATGTTTATATAAATGTTAATACATGAAGTCCACTTC
1 ATGTTTATATAAATGTTAATACATGAAGTCCACTTC
15872930 ATGTTTATATAAATGTTAATACATGAAGTCCACTTC
1 ATGTTTATATAAATGTTAATACATGAAGTCCACTTC
15872966 ATGTTTATATAAATGTTAATACATGAAGTCCACTTC
1 ATGTTTATATAAATGTTAATACATGAAGTCCACTTC
15873002 ATGTTTATATAAATGTTAATACATG
1 ATGTTTATATAAATGTTAATACATG
15873027 TGATGAATGG
Statistics
Matches: 385, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 385 1.00
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.39
Consensus pattern (36 bp):
ATGTTTATATAAATGTTAATACATGAAGTCCACTTC
Found at i:15879470 original size:40 final size:39
Alignment explanation
Indices: 15879279--15879457 Score: 175
Period size: 40 Copynumber: 4.5 Consensus size: 39
15879269 TTGAATGATG
* * * *
15879279 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCT-AGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
15879319 TCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCT-AG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
15879359 TCCGGGCTAGGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
15879398 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCT-AGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
15879439 -CCGGGCTATGTCCCGAAGG
1 TCCGGGCTA-GTCCCGAAGG
15879458 TGTTTGAACG
Statistics
Matches: 116, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
39 34 0.29
40 72 0.62
41 10 0.09
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:15879485 original size:79 final size:79
Alignment explanation
Indices: 15879334--15879496 Score: 179
Period size: 79 Copynumber: 2.1 Consensus size: 79
15879324 ACTAAGATCT
* * **
15879334 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAGGCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 GAAGGCAATTGTGCGAGATACTAATACCGGGCTAGGCCCGAAGGCATTTGAACGAGTTACTAAAT
*
15879399 CCGGGTTAAGTCCC
66 CCGGGTTAAATCCC
* * **
15879413 GAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGTGTTTGAACGAG-TAGCTA
1 GAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTA-GGCCCGAAGGCATTTGAACGAGTTA-CTA
* *
15879476 TATCC-GGTTAAATTCC
63 AATCCGGGTTAAATCCC
15879492 GAAGG
1 GAAGG
15879497 TACGTGATTT
Statistics
Matches: 70, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
78 2 0.03
79 44 0.63
80 24 0.34
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.26
Consensus pattern (79 bp):
GAAGGCAATTGTGCGAGATACTAATACCGGGCTAGGCCCGAAGGCATTTGAACGAGTTACTAAAT
CCGGGTTAAATCCC
Found at i:15910948 original size:144 final size:144
Alignment explanation
Indices: 15910688--15910975 Score: 558
Period size: 144 Copynumber: 2.0 Consensus size: 144
15910678 TCAGCATCTG
15910688 CCTTTAAGGTAGACTTTACCTATTTCATGGTTTCCATGATTCAACCAGCCCTTTTTGCATAAATA
1 CCTTTAAGGTAGACTTTACCTATTTCATGGTTTCCATGATTCAACCAGCCCTTTTTGCATAAATA
*
15910753 GCACAATTTATGAAAGTGATTAACCATTCCCATGGCCAATCCTTGTCAAGCATATCCACACCAAA
66 GCACAATTTATGAAAGTGATTAACCATCCCCATGGCCAATCCTTGTCAAGCATATCCACACCAAA
15910818 TGATTATAACAATA
131 TGATTATAACAATA
*
15910832 CCTTTAAGGTAGACTTTACCTATTTCATGGTTTCCATGATTCAACTAGCCCTTTTTGCATAAATA
1 CCTTTAAGGTAGACTTTACCTATTTCATGGTTTCCATGATTCAACCAGCCCTTTTTGCATAAATA
15910897 GCACAATTTATGAAAGTGATTAACCATCCCCATGGCCAATCCTTGTCAAGCATATCCACACCAAA
66 GCACAATTTATGAAAGTGATTAACCATCCCCATGGCCAATCCTTGTCAAGCATATCCACACCAAA
15910962 TGATTATAACAATA
131 TGATTATAACAATA
15910976 TACTCAAACA
Statistics
Matches: 142, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
144 142 1.00
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.32
Consensus pattern (144 bp):
CCTTTAAGGTAGACTTTACCTATTTCATGGTTTCCATGATTCAACCAGCCCTTTTTGCATAAATA
GCACAATTTATGAAAGTGATTAACCATCCCCATGGCCAATCCTTGTCAAGCATATCCACACCAAA
TGATTATAACAATA
Found at i:15911652 original size:79 final size:81
Alignment explanation
Indices: 15911550--15911733 Score: 222
Period size: 79 Copynumber: 2.3 Consensus size: 81
15911540 GCTCCTCGTT
* *
15911550 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAACC
*
15911612 CGGAT-TTAGTAAC-TCGCA
63 CGGATATT-GTAACTTAGCA
**
15911630 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
*
15911694 ATATTGTCACTTAGCA
66 ATATTGTAACTTAGCA
15911710 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
15911734 CATCATTCAA
Statistics
Matches: 92, Mismatches: 6, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
78 14 0.15
79 56 0.61
80 22 0.24
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATTGTAACTTAGCA
Found at i:15911667 original size:39 final size:41
Alignment explanation
Indices: 15911550--15911733 Score: 199
Period size: 40 Copynumber: 4.6 Consensus size: 41
15911540 GCTCCTCGTT
* *
15911550 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAATCTCGCA
* *
15911590 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAA-CTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
15911630 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
* * *
15911669 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAATC-TCGCA
15911710 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
15911734 CATCATTCAA
Statistics
Matches: 128, Mismatches: 7, Indels: 19
0.83 0.05 0.12
Matches are distributed among these distances:
38 3 0.02
39 48 0.38
40 66 0.52
41 11 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
Found at i:15922751 original size:57 final size:57
Alignment explanation
Indices: 15922687--15922800 Score: 210
Period size: 57 Copynumber: 2.0 Consensus size: 57
15922677 AAAGGGGGGG
* *
15922687 CTTTGATAGTGTGGGTGACTTCGACTTCAAAATCCCGAGTCCGATAGCTGGAGAACC
1 CTTTGATAGTGTGGGCGACTTCGACTTCAAAATCCCGAGTCAGATAGCTGGAGAACC
15922744 CTTTGATAGTGTGGGCGACTTCGACTTCAAAATCCCGAGTCAGATAGCTGGAGAACC
1 CTTTGATAGTGTGGGCGACTTCGACTTCAAAATCCCGAGTCAGATAGCTGGAGAACC
15922801 AAAATCTATA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 55 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (57 bp):
CTTTGATAGTGTGGGCGACTTCGACTTCAAAATCCCGAGTCAGATAGCTGGAGAACC
Found at i:15923219 original size:40 final size:40
Alignment explanation
Indices: 15923182--15923446 Score: 358
Period size: 40 Copynumber: 6.7 Consensus size: 40
15923172 GCTACTCGTT
* *
15923182 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
15923222 CAAATGTCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
15923262 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
15923302 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
15923342 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
15923381 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
15923422 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
15923447 CATCATTCAA
Statistics
Matches: 205, Mismatches: 15, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
38 2 0.01
39 33 0.16
40 157 0.77
41 13 0.06
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:15923437 original size:119 final size:121
Alignment explanation
Indices: 15923182--15923446 Score: 369
Period size: 119 Copynumber: 2.2 Consensus size: 121
15923172 GCTACTCGTT
* *
15923182 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGTCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* * *
15923246 GATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 GAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCA
* *
15923302 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* ** * *
15923365 GAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
66 GAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAGTAAC-TAGCA
15923422 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
15923447 CATCATTCAA
Statistics
Matches: 129, Mismatches: 13, Indels: 7
0.87 0.09 0.05
Matches are distributed among these distances:
118 3 0.02
119 68 0.53
120 56 0.43
121 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (121 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
GAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCA
Found at i:15923532 original size:23 final size:23
Alignment explanation
Indices: 15923495--15923540 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
15923485 TGGCACATTC
*
15923495 GTATTTCGTTCTCGTTAGCAAAA
1 GTATTTCATTCTCGTTAGCAAAA
*
15923518 GTATTTCATTTTCGTTAGCAAAA
1 GTATTTCATTCTCGTTAGCAAAA
15923541 CTCGAACACA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.41
Consensus pattern (23 bp):
GTATTTCATTCTCGTTAGCAAAA
Found at i:15924506 original size:69 final size:69
Alignment explanation
Indices: 15924420--15924557 Score: 267
Period size: 69 Copynumber: 2.0 Consensus size: 69
15924410 CCGAATGCTC
15924420 CTTCTACACCATTTACCTTCACAAAGCATGAATTTCATCATCCAACTTACAAGCTTACAATCTCA
1 CTTCTACACCATTTACCTTCACAAAGCATGAATTTCATCATCCAACTTACAAGCTTACAATCTCA
15924485 TGAA
66 TGAA
*
15924489 CTTCTACACCATTTACCTTCCCAAAGCATGAATTTCATCATCCAACTTACAAGCTTACAATCTCA
1 CTTCTACACCATTTACCTTCACAAAGCATGAATTTCATCATCCAACTTACAAGCTTACAATCTCA
15924554 TGAA
66 TGAA
15924558 GTTTAACCTC
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 68 1.00
ACGTcount: A:0.34, C:0.30, G:0.06, T:0.30
Consensus pattern (69 bp):
CTTCTACACCATTTACCTTCACAAAGCATGAATTTCATCATCCAACTTACAAGCTTACAATCTCA
TGAA
Found at i:15926523 original size:91 final size:91
Alignment explanation
Indices: 15926368--15926549 Score: 346
Period size: 91 Copynumber: 2.0 Consensus size: 91
15926358 AGAAGTCATT
15926368 CCATATATGTATAGATTCCAATCTGAGTCTAGTTTCTATAGAAACAAACGACATCAGTATTGAAG
1 CCATATATGTATAGATTCCAATCTGAGTCTAGTTTCTATAGAAACAAACGACATCAGTATTGAAG
15926433 CCCTGTATAGGGAGATATCCAAGTCG
66 CCCTGTATAGGGAGATATCCAAGTCG
**
15926459 CCATATATGTATAGATTCCTCTCTGAGTCTAGTTTCTATAGAAACAAACGACATCAGTATTGAAG
1 CCATATATGTATAGATTCCAATCTGAGTCTAGTTTCTATAGAAACAAACGACATCAGTATTGAAG
15926524 CCCTGTATAGGGAGATATCCAAGTCG
66 CCCTGTATAGGGAGATATCCAAGTCG
15926550 TAATGTGCAA
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
91 89 1.00
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (91 bp):
CCATATATGTATAGATTCCAATCTGAGTCTAGTTTCTATAGAAACAAACGACATCAGTATTGAAG
CCCTGTATAGGGAGATATCCAAGTCG
Found at i:15931795 original size:27 final size:27
Alignment explanation
Indices: 15931713--15931804 Score: 103
Period size: 27 Copynumber: 3.4 Consensus size: 27
15931703 TGGATAAGTT
** * *
15931713 GTAGAATTACTAAAATACCCCTATAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
15931740 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * *
15931767 GTAGAATTACTGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
15931794 GTAAAATTACC
1 GTAGAATTACC
15931805 ATTTTGCCCC
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:15932501 original size:27 final size:26
Alignment explanation
Indices: 15932457--15932508 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
15932447 CTCGCTGCAA
*
15932457 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
15932484 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
15932509 GCAGCCTCAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:15943447 original size:44 final size:44
Alignment explanation
Indices: 15943394--15943899 Score: 726
Period size: 44 Copynumber: 11.5 Consensus size: 44
15943384 GCTCTTTGTA
*
15943394 AATATAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCC
1 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCC
* * *
15943438 AATACAGAGATGCCAAATCTACGACCTTCGATCTGCTCTCCGCC
1 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCC
* * * *
15943482 AATACAGAGATGTCGATTCTGCTATCTTTGATCT-CTTCTCCGCC
1 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGC-TCTCCGCC
* *
15943526 AATACAGAGATTCCAAATCTACTATCTTCGATCTGCTCTCCGCC
1 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCC
* * *
15943570 AATACAGAGATGCCAAATCTACGATCTTCAATCTGCTCTCCGCC
1 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCC
* * * * *
15943614 AATACAGAGATGCCAAATTTGCTATTTTCGACCCGTTCTCCGCC
1 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCC
*
15943658 AATACAGAGATGCCAAATCTGCTATCTTCGATCTACTCTCCGCC
1 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCC
* * *
15943702 AATACAGAGATGCCAAATCTGCGACCTTCGATCTACTCTCCGCC
1 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCC
* *
15943746 AATACAGAGATGCCAATTCTGCTATCTTCGATCTGTTCTCCGCC
1 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCC
* * *
15943790 AATACAGAGATGTCAAGTCTGCTATCTTCGATCTGCTCTCTGCC
1 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCC
* * *
15943834 AATACCGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCC
1 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCC
15943878 AATACAGAGATGCCAAATCTGC
1 AATACAGAGATGCCAAATCTGC
15943900 AGGATTTACC
Statistics
Matches: 409, Mismatches: 51, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
43 1 0.00
44 407 1.00
45 1 0.00
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.28
Consensus pattern (44 bp):
AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCC
Found at i:15947091 original size:46 final size:46
Alignment explanation
Indices: 15947041--15947216 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
15947031 TGGTTGAGCA
15947041 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
15947087 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
15947132 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
15947180 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
15947217 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:15947197 original size:93 final size:93
Alignment explanation
Indices: 15947038--15947209 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
15947028 GGATGGTTGA
* *
15947038 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
15947103 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
15947131 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
15947196 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
15947210 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:15954588 original size:46 final size:46
Alignment explanation
Indices: 15954538--15954713 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
15954528 TGGTTGAGCA
15954538 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
15954584 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
15954629 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
15954677 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
15954714 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 61 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:15954694 original size:93 final size:93
Alignment explanation
Indices: 15954535--15954706 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
15954525 GGATGGTTGA
*
15954535 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
15954600 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
15954628 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
15954692 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
15954707 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:15967138 original size:13 final size:13
Alignment explanation
Indices: 15967120--15967151 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
15967110 AAGATTATAC
15967120 AATAAAGGGTGGG
1 AATAAAGGGTGGG
15967133 AATAAAGGGTGGG
1 AATAAAGGGTGGG
15967146 AATAAA
1 AATAAA
15967152 TTTAAGAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.38, T:0.16
Consensus pattern (13 bp):
AATAAAGGGTGGG
Found at i:15980678 original size:48 final size:50
Alignment explanation
Indices: 15980626--15980749 Score: 152
Period size: 48 Copynumber: 2.6 Consensus size: 50
15980616 GATAGCCAGT
* * *
15980626 GTAAGACCATGTCTGGGACGTGGCATCG-GCGT-TGAGACGAGGGCTAG-C
1 GTAAGACCATGTCTGGGACATGGCATCGCACGTAT-AGACGAGAGCTAGTC
*
15980674 GTAAGA-CATGTCTGGGACAT-GCATCAGCACGTATATACGAGAGCTAGTC
1 GTAAGACCATGTCTGGGACATGGCATC-GCACGTATAGACGAGAGCTAGTC
15980723 -TAAGACCATGTCTGGGACATGGCATCG
1 GTAAGACCATGTCTGGGACATGGCATCG
15980750 ACCTCGAAGA
Statistics
Matches: 66, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
46 5 0.08
47 14 0.21
48 25 0.38
49 17 0.26
50 5 0.08
ACGTcount: A:0.26, C:0.21, G:0.32, T:0.21
Consensus pattern (50 bp):
GTAAGACCATGTCTGGGACATGGCATCGCACGTATAGACGAGAGCTAGTC
Found at i:15986094 original size:13 final size:13
Alignment explanation
Indices: 15986052--15986100 Score: 52
Period size: 13 Copynumber: 3.9 Consensus size: 13
15986042 ATGTTTTCTC
15986052 GCACACATA--GT
1 GCACACATAGTGT
15986063 GC-CACATAGCT-T
1 GCACACATAG-TGT
15986075 CGCACACATAGTGT
1 -GCACACATAGTGT
15986089 GCACACATAGTG
1 GCACACATAGTG
15986101 CAATGTTTTC
Statistics
Matches: 32, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
10 6 0.19
11 2 0.06
12 1 0.03
13 15 0.47
14 8 0.25
ACGTcount: A:0.31, C:0.29, G:0.20, T:0.20
Consensus pattern (13 bp):
GCACACATAGTGT
Found at i:15986123 original size:61 final size:61
Alignment explanation
Indices: 15986028--15986148 Score: 224
Period size: 61 Copynumber: 2.0 Consensus size: 61
15986018 TTACTTATTC
* *
15986028 GCACACATGGTGCAATGTTTTCTCGCACACATAGTGCCACATAGCTTCGCACACATAGTGT
1 GCACACATAGTGCAATGTTTTCTCGCACACATAGTGCCACATAGCTCCGCACACATAGTGT
15986089 GCACACATAGTGCAATGTTTTCTCGCACACATAGTGCCACATAGCTCCGCACACATAGTG
1 GCACACATAGTGCAATGTTTTCTCGCACACATAGTGCCACATAGCTCCGCACACATAGTG
15986149 CTGTATTTTC
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 58 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (61 bp):
GCACACATAGTGCAATGTTTTCTCGCACACATAGTGCCACATAGCTCCGCACACATAGTGT
Found at i:15989561 original size:44 final size:41
Alignment explanation
Indices: 15989487--15989628 Score: 115
Period size: 42 Copynumber: 3.3 Consensus size: 41
15989477 CGATATGTGT
* * * * *
15989487 TTTCCTGTAAGACCACGTCTAGGACGTTGGCATCGATCTGA
1 TTTCATGTAAGACTATGTCTGGGACATTGGCATCGATCTGA
*
15989528 GGTTTACATGTAAGACTATGTCTGGGACATTGGCATCGTATTTGA
1 --TTT-CATGTAAGACTATGTCTGGGACATTGGCATCG-ATCTGA
* * * *
15989573 TTTCGTGTAAGACCT-TGTCTGGGATAGTGGCATCGATATTTGA
1 TTTCATGTAAGA-CTATGTCTGGGACATTGGCATCG--ATCTGA
*
15989616 TTACATGTAAGAC
1 TTTCATGTAAGAC
15989629 CACATCTGGG
Statistics
Matches: 84, Mismatches: 11, Indels: 9
0.81 0.11 0.09
Matches are distributed among these distances:
42 27 0.32
43 25 0.30
44 27 0.32
45 5 0.06
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (41 bp):
TTTCATGTAAGACTATGTCTGGGACATTGGCATCGATCTGA
Found at i:15989592 original size:42 final size:42
Alignment explanation
Indices: 15989487--15989629 Score: 137
Period size: 43 Copynumber: 3.3 Consensus size: 42
15989477 CGATATGTGT
* ** * * *
15989487 TTTCCTGTAAGACCACGTCTAGGACGTTGGCATCG-ATCTGA
1 TTTCATGTAAGACCTTGTCTGGGACATTGGCATCGTATTTGA
15989528 GGTTTACATGTAAGA-CTATGTCTGGGACATTGGCATCGTATTTGA
1 --TTT-CATGTAAGACCT-TGTCTGGGACATTGGCATCGTATTTGA
* * *
15989573 TTTCGTGTAAGACCTTGTCTGGGATAGTGGCATCGATATTTGA
1 TTTCATGTAAGACCTTGTCTGGGACATTGGCATCG-TATTTGA
*
15989616 TTACATGTAAGACC
1 TTTCATGTAAGACC
15989630 ACATCTGGGA
Statistics
Matches: 84, Mismatches: 11, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
42 26 0.31
43 28 0.33
44 25 0.30
45 5 0.06
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (42 bp):
TTTCATGTAAGACCTTGTCTGGGACATTGGCATCGTATTTGA
Found at i:15989627 original size:43 final size:43
Alignment explanation
Indices: 15989531--15989629 Score: 139
Period size: 42 Copynumber: 2.3 Consensus size: 43
15989521 GATCTGAGGT
*
15989531 TTACATGTAAGA-CTATGTCTGGGACATTGGCATCGTATTTGA
1 TTACATGTAAGACCTATGTCTGGGACAGTGGCATCGTATTTGA
* * *
15989573 TTTCGTGTAAGACCT-TGTCTGGGATAGTGGCATCGATATTTGA
1 TTACATGTAAGACCTATGTCTGGGACAGTGGCATCG-TATTTGA
15989616 TTACATGTAAGACC
1 TTACATGTAAGACC
15989630 ACATCTGGGA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
42 28 0.57
43 21 0.43
ACGTcount: A:0.25, C:0.15, G:0.24, T:0.35
Consensus pattern (43 bp):
TTACATGTAAGACCTATGTCTGGGACAGTGGCATCGTATTTGA
Found at i:15989637 original size:43 final size:42
Alignment explanation
Indices: 15989531--15989648 Score: 139
Period size: 43 Copynumber: 2.8 Consensus size: 42
15989521 GATCTGAGGT
* * *
15989531 TTACATGTAAGACTATGTCTGGGACATTGGCATCGTATTTGA
1 TTACATGTAAGACCATGTCTGGGATAGTGGCATCGTATTTGA
* * *
15989573 TTTCGTGTAAGACCTTGTCTGGGATAGTGGCATCGATATTTGA
1 TTACATGTAAGACCATGTCTGGGATAGTGGCATCG-TATTTGA
**
15989616 TTACATGTAAGACCACATCTGGGAT-GTTGGCAT
1 TTACATGTAAGACCATGTCTGGGATAG-TGGCAT
15989649 TGTACGAGTT
Statistics
Matches: 63, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
42 30 0.48
43 33 0.52
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (42 bp):
TTACATGTAAGACCATGTCTGGGATAGTGGCATCGTATTTGA
Found at i:15999545 original size:27 final size:28
Alignment explanation
Indices: 15999464--15999558 Score: 129
Period size: 27 Copynumber: 3.4 Consensus size: 28
15999454 GAGATTGGCG
* * * *
15999464 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
15999493 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
15999521 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
15999548 CTGAGTGTGCG
1 CTAAGTGTGCG
15999559 GACTTAATAT
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.39
28 22 0.36
29 15 0.25
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:15999569 original size:27 final size:27
Alignment explanation
Indices: 15999489--15999571 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
15999479 TAAATTGTAC
* *
15999489 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
15999517 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
15999544 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
15999571 A
1 A
15999572 CTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:16001422 original size:12 final size:12
Alignment explanation
Indices: 16001405--16001430 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
16001395 ACAAATTATG
16001405 TTCGGTATCATT
1 TTCGGTATCATT
16001417 TTCGGTATCATT
1 TTCGGTATCATT
16001429 TT
1 TT
16001431 GTTCGTGATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.15, G:0.15, T:0.54
Consensus pattern (12 bp):
TTCGGTATCATT
Found at i:16011939 original size:23 final size:22
Alignment explanation
Indices: 16011897--16011978 Score: 75
Period size: 23 Copynumber: 3.7 Consensus size: 22
16011887 ATTTTTTATA
16011897 ATTTTTAAATATTTTATATTTT
1 ATTTTTAAATATTTTATATTTT
*
16011919 ATTTTCTAAATGA-TTTCTA--TT
1 ATTTT-TAAAT-ATTTTATATTTT
16011940 ATTTTT-AATATTTTAATATTTT
1 ATTTTTAAATATTTT-ATATTTT
16011962 CATTTTTATAAT-TTTTA
1 -ATTTTTA-AATATTTTA
16011979 AAAATTATAT
Statistics
Matches: 49, Mismatches: 2, Indels: 17
0.72 0.03 0.25
Matches are distributed among these distances:
18 1 0.02
19 6 0.12
20 3 0.06
21 7 0.14
22 7 0.14
23 17 0.35
24 5 0.10
25 3 0.06
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (22 bp):
ATTTTTAAATATTTTATATTTT
Found at i:16011979 original size:32 final size:31
Alignment explanation
Indices: 16011958--16012025 Score: 91
Period size: 32 Copynumber: 2.2 Consensus size: 31
16011948 TATTTTAATA
*
16011958 TTTTCATTTTTATAATTTTTAAAAATTATAT
1 TTTTAATTTTTATAATTTTTAAAAATTATAT
** *
16011989 TTTTAATTTTTTATAATTTTTCTAAATTCTAT
1 TTTTAA-TTTTTATAATTTTTAAAAATTATAT
16012021 TTTTA
1 TTTTA
16012026 TAGTTTTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
31 5 0.16
32 27 0.84
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (31 bp):
TTTTAATTTTTATAATTTTTAAAAATTATAT
Found at i:16012000 original size:23 final size:23
Alignment explanation
Indices: 16011939--16012001 Score: 65
Period size: 23 Copynumber: 2.7 Consensus size: 23
16011929 TGATTTCTAT
* * *
16011939 TATTTTTAATATTTT-AATATTT
1 TATTTTTAATTTTTTAAAAATTA
*
16011961 TCATTTTTATAATTTTTAAAAATTA
1 T-ATTTTTA-ATTTTTTAAAAATTA
16011986 TATTTTTAATTTTTTA
1 TATTTTTAATTTTTTA
16012002 TAATTTTTCT
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
22 1 0.03
23 14 0.42
24 12 0.36
25 6 0.18
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (23 bp):
TATTTTTAATTTTTTAAAAATTA
Done.