Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 69 of 313
Found at i:23434023 original size:29 final size:30
Alignment explanation
Indices: 23433967--23434030 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 30
23433957 GAGTTGGATT
* *
23433967 TAAATTTTGAAATATGAAAAGTAAATGAAC
1 TAAATTTTGAAAAATGAAAAATAAATGAAC
* *
23433997 TAAATTTTTAAAAAT-AAAAATACATGAAC
1 TAAATTTTGAAAAATGAAAAATAAATGAAC
23434026 TAAAT
1 TAAAT
23434031 CCTAAGTTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 17 0.57
30 13 0.43
ACGTcount: A:0.56, C:0.05, G:0.08, T:0.31
Consensus pattern (30 bp):
TAAATTTTGAAAAATGAAAAATAAATGAAC
Found at i:23435848 original size:16 final size:16
Alignment explanation
Indices: 23435827--23435859 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
23435817 ACAATTAGGG
23435827 TTAAAAAAATATTTTT
1 TTAAAAAAATATTTTT
23435843 TTAAAAAAATATTTTT
1 TTAAAAAAATATTTTT
23435859 T
1 T
23435860 GGGTGTTGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TTAAAAAAATATTTTT
Found at i:23436553 original size:30 final size:30
Alignment explanation
Indices: 23436517--23436579 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
23436507 ATTTATTTTA
23436517 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
*
23436547 TTGTTAATTTTGTTATTATTTTAGAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
23436577 TTG
1 TTG
23436580 CTTGTTAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.27, C:0.03, G:0.13, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:23436728 original size:12 final size:12
Alignment explanation
Indices: 23436705--23436739 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
23436695 ATGTATTTTT
23436705 AAAATT-ATATA
1 AAAATTAATATA
23436716 AAAATTAATATA
1 AAAATTAATATA
23436728 AAAATTAATATA
1 AAAATTAATATA
23436740 GGCAGGCCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 6 0.26
12 17 0.74
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:23438937 original size:18 final size:20
Alignment explanation
Indices: 23438895--23438931 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
23438885 ATATTTTATG
*
23438895 ATTA-TTTAATTAGATATAT
1 ATTATTTTAATGAGATATAT
23438914 ATTATTTTAATGAGATAT
1 ATTATTTTAATGAGATAT
23438932 TTTATTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (20 bp):
ATTATTTTAATGAGATATAT
Found at i:23441143 original size:46 final size:46
Alignment explanation
Indices: 23441091--23441411 Score: 408
Period size: 46 Copynumber: 7.0 Consensus size: 46
23441081 AGTGTGCTCT
*
23441091 CTGATATGAAATGTGTAAGACAATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
23441137 CTGATATGAAATGTGTAAGACCATGGTTGAAAAATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
23441183 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
23441229 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** *** *
23441275 ATGACGGGAAATAAATAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * **
23441321 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * ** * * * *
23441367 ATGACAAAAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGA-TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
23441412 TCATGTCAAA
Statistics
Matches: 246, Mismatches: 28, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
46 213 0.87
47 33 0.13
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:23443868 original size:3 final size:3
Alignment explanation
Indices: 23443860--23443962 Score: 55
Period size: 3 Copynumber: 33.0 Consensus size: 3
23443850 TTGGACATTT
* * * *
23443860 TTA TTA TTA TT- TTA ATA ATA TTA TTA CTGTA TTTA TTA TTG TTG TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -T-TA -TTA TTA TTA TTA TTA
* * * * * *
23443907 CTA TTT TTA TTA TTA TTA CATA TTA TTA TTC TTC TTA TTAA TTT TTA
1 TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TT-A TTA TTA
*
23443954 ATA TTA TTA
1 TTA TTA TTA
23443963 CCCGTATTAA
Statistics
Matches: 78, Mismatches: 17, Indels: 10
0.74 0.16 0.10
Matches are distributed among these distances:
2 2 0.03
3 65 0.83
4 8 0.10
5 3 0.04
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:23444138 original size:26 final size:26
Alignment explanation
Indices: 23444109--23444158 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
23444099 TATTACTATT
*
23444109 TTTTTATTATAATTATTAACATATCA
1 TTTTTATTATAATCATTAACATATCA
* *
23444135 TTTTTATTTTTATCATTAACATAT
1 TTTTTATTATAATCATTAACATAT
23444159 TATCATGCTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.34, C:0.08, G:0.00, T:0.58
Consensus pattern (26 bp):
TTTTTATTATAATCATTAACATATCA
Found at i:23444231 original size:20 final size:19
Alignment explanation
Indices: 23444192--23444232 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
23444182 TACTATTTTC
*
23444192 TACTTTATTACTGTATTAT
1 TACTTTATTACTGTACTAT
*
23444211 TACTATTATTACTGTCCTAT
1 TACT-TTATTACTGTACTAT
23444231 TA
1 TA
23444233 TCAAACTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.27, C:0.15, G:0.05, T:0.54
Consensus pattern (19 bp):
TACTTTATTACTGTACTAT
Found at i:23444282 original size:8 final size:8
Alignment explanation
Indices: 23444271--23444309 Score: 60
Period size: 8 Copynumber: 4.8 Consensus size: 8
23444261 TATTATATTA
23444271 TATTTTTT
1 TATTTTTT
23444279 TATTTTTT
1 TATTTTTT
23444287 TATTTTTT
1 TATTTTTT
*
23444295 TATTCATTT
1 TATT-TTTT
23444304 TATTTT
1 TATTTT
23444310 CATTTTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
8 21 0.75
9 7 0.25
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (8 bp):
TATTTTTT
Found at i:23444295 original size:11 final size:11
Alignment explanation
Indices: 23444281--23444319 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
23444271 TATTTTTTTA
23444281 TTTTTTT-ATT
1 TTTTTTTCATT
23444291 TTTTTATTCATT
1 TTTTT-TTCATT
*
23444303 TTATTTTCATT
1 TTTTTTTCATT
23444314 TTTTTT
1 TTTTTT
23444320 ACAAATTTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
10 5 0.20
11 13 0.52
12 7 0.28
ACGTcount: A:0.13, C:0.05, G:0.00, T:0.82
Consensus pattern (11 bp):
TTTTTTTCATT
Found at i:23456464 original size:46 final size:46
Alignment explanation
Indices: 23456411--23456544 Score: 196
Period size: 46 Copynumber: 2.9 Consensus size: 46
23456401 CATGAAATTA
* *
23456411 CAGATCCTATACCCCTGAGACGCAGTGGGATGGATTGAAGAAAATG
1 CAGATCCTATACCCCTGAAACGCAGTGGGATGGATTAAAGAAAATG
* * *
23456457 CAGATCCTATGCCCCTGAAACGCAGTAGGATGGGTTAAAGAAAATG
1 CAGATCCTATACCCCTGAAACGCAGTGGGATGGATTAAAGAAAATG
* * *
23456503 TAGATCCTATACCCCTGAAATGCAGTGGGATAGATTAAAGAA
1 CAGATCCTATACCCCTGAAACGCAGTGGGATGGATTAAAGAA
23456545 GATTATAGAT
Statistics
Matches: 77, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.21
Consensus pattern (46 bp):
CAGATCCTATACCCCTGAAACGCAGTGGGATGGATTAAAGAAAATG
Found at i:23457471 original size:20 final size:20
Alignment explanation
Indices: 23457442--23457480 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
23457432 CACCACACAC
23457442 GTCCGCCTCCACGTCGCCAA
1 GTCCGCCTCCACGTCGCCAA
*
23457462 GTCCGTCTCCACGTCGCCA
1 GTCCGCCTCCACGTCGCCA
23457481 TACCTGCGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.13, C:0.49, G:0.21, T:0.18
Consensus pattern (20 bp):
GTCCGCCTCCACGTCGCCAA
Found at i:23461715 original size:114 final size:114
Alignment explanation
Indices: 23461573--23461805 Score: 448
Period size: 114 Copynumber: 2.0 Consensus size: 114
23461563 TAGAGTTAAT
* *
23461573 ATTTTTAAACTTTTTATGATTTTATAAATAAAATTTATTGTTTGAAATTAAACTGCAATTGAAAC
1 ATTTATAAAATTTTTATGATTTTATAAATAAAATTTATTGTTTGAAATTAAACTGCAATTGAAAC
23461638 AAACAATTTTCAAACCACTTTTTATACAATAAATATTATCTATATTATA
66 AAACAATTTTCAAACCACTTTTTATACAATAAATATTATCTATATTATA
23461687 ATTTATAAAATTTTTATGATTTTATAAATAAAATTTATTGTTTGAAATTAAACTGCAATTGAAAC
1 ATTTATAAAATTTTTATGATTTTATAAATAAAATTTATTGTTTGAAATTAAACTGCAATTGAAAC
23461752 AAACAATTTTCAAACCACTTTTTATACAATAAATATTATCTATATTATA
66 AAACAATTTTCAAACCACTTTTTATACAATAAATATTATCTATATTATA
23461801 ATTTA
1 ATTTA
23461806 GACTTATTTT
Statistics
Matches: 117, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
114 117 1.00
ACGTcount: A:0.43, C:0.09, G:0.04, T:0.44
Consensus pattern (114 bp):
ATTTATAAAATTTTTATGATTTTATAAATAAAATTTATTGTTTGAAATTAAACTGCAATTGAAAC
AAACAATTTTCAAACCACTTTTTATACAATAAATATTATCTATATTATA
Found at i:23465039 original size:3 final size:3
Alignment explanation
Indices: 23465031--23465057 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
23465021 AAATTGAAAA
23465031 AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG
23465058 CGTGATTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:23473617 original size:66 final size:66
Alignment explanation
Indices: 23473487--23473619 Score: 196
Period size: 66 Copynumber: 2.0 Consensus size: 66
23473477 GTGTACTCAT
* * * *
23473487 ACAAAATGTTCGGGTTCCCATATTAGTGTACTCATACGCCCAAGTACCACCAGAGACCCTAAATA
1 ACAAAATGTACGAGTTCCCATATTAGTGTACTCATACACCCAAGTACCACCAGAGACCCCAAATA
23473552 C
66 C
* *
23473553 ACAAAATGTACGAGTTCCCATATTAGTGTACTCATACACTCAAGTACCACTAGAG-CCTCCAAAT
1 ACAAAATGTACGAGTTCCCATATTAGTGTACTCATACACCCAAGTACCACCAGAGACC-CCAAAT
23473617 AC
65 AC
23473619 A
1 A
23473620 TATGTATTTG
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
65 2 0.03
66 58 0.97
ACGTcount: A:0.35, C:0.28, G:0.14, T:0.23
Consensus pattern (66 bp):
ACAAAATGTACGAGTTCCCATATTAGTGTACTCATACACCCAAGTACCACCAGAGACCCCAAATA
C
Found at i:23473707 original size:35 final size:35
Alignment explanation
Indices: 23473651--23473718 Score: 91
Period size: 35 Copynumber: 1.9 Consensus size: 35
23473641 GGTACTTGGG
* *
23473651 TGTATGAGTACACTAATATGGGAACTCGTACATTC
1 TGTATGAGTACACTAACATGGGAACTCGAACATTC
* * *
23473686 TGTATGAGTATACTAGCATGGGTACTCGAACAT
1 TGTATGAGTACACTAACATGGGAACTCGAACAT
23473719 ATGCCTCTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 28 1.00
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (35 bp):
TGTATGAGTACACTAACATGGGAACTCGAACATTC
Found at i:23475871 original size:2 final size:2
Alignment explanation
Indices: 23475864--23475890 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
23475854 AATTTTCTTT
23475864 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
23475891 CAAGTTATCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:23476074 original size:13 final size:13
Alignment explanation
Indices: 23476056--23476080 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23476046 AATATCAATT
23476056 TATATATATATAA
1 TATATATATATAA
23476069 TATATATATATA
1 TATATATATATA
23476081 TATCATGCGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TATATATATATAA
Found at i:23484141 original size:6 final size:6
Alignment explanation
Indices: 23484117--23484161 Score: 54
Period size: 6 Copynumber: 7.2 Consensus size: 6
23484107 CAACCAACCA
* *
23484117 TATATG TATGTATG CATATG TATATG TATATG TATATG TCTATG T
1 TATATG TA--TATG TATATG TATATG TATATG TATATG TATATG T
23484162 GTTGAACTTG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
6 29 0.85
8 5 0.15
ACGTcount: A:0.29, C:0.04, G:0.18, T:0.49
Consensus pattern (6 bp):
TATATG
Found at i:23491707 original size:9 final size:9
Alignment explanation
Indices: 23491693--23491726 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
23491683 GTTACTCAAA
23491693 GAAATTTTT
1 GAAATTTTT
23491702 GAAATTTTT
1 GAAATTTTT
*
23491711 AAAAATTTTT
1 -GAAATTTTT
23491721 GAAATT
1 GAAATT
23491727 CTTATTGTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
9 14 0.64
10 8 0.36
ACGTcount: A:0.41, C:0.00, G:0.09, T:0.50
Consensus pattern (9 bp):
GAAATTTTT
Found at i:23492277 original size:110 final size:109
Alignment explanation
Indices: 23492073--23492278 Score: 272
Period size: 110 Copynumber: 1.9 Consensus size: 109
23492063 ATATTATTAT
* * * *
23492073 TATAATATTAATAACCCTTTAAAATAAGATATTTTAGTAACTTTACAATTGAGTTGGTGTTGAGT
1 TATAATATTAATAACCCTTTAAAATAAGATATTTTAGTAACTTTACAACTGAGTTGGGGTCGAAT
* * * *
23492138 TGGCTCGTGACACCAACTTAGTAAGCCATTTTATTTATAAAATA
66 TGACTCATGACACCAACTCAATAAGCCATTTTATTTATAAAATA
* * *
23492182 TATAATATTTATTACCCTTTAAAATAAGGGTATTTTAGTAA-TTTCACAACTGAGTTGGGGTCGA
1 TATAATATTAATAACCCTTTAAAATAA-GATATTTTAGTAACTTT-ACAACTGAGTTGGGGTCGA
23492246 ATTGACTCATGACACCAACTCAATCAA-CCATTT
64 ATTGACTCATGACACCAACTCAAT-AAGCCATTT
23492279 ATATATAGTA
Statistics
Matches: 83, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
109 28 0.34
110 53 0.64
111 2 0.02
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.37
Consensus pattern (109 bp):
TATAATATTAATAACCCTTTAAAATAAGATATTTTAGTAACTTTACAACTGAGTTGGGGTCGAAT
TGACTCATGACACCAACTCAATAAGCCATTTTATTTATAAAATA
Found at i:23492951 original size:22 final size:20
Alignment explanation
Indices: 23492925--23492984 Score: 68
Period size: 22 Copynumber: 2.9 Consensus size: 20
23492915 AGATTTCTGC
23492925 ATTTCGACACTTAAAATTTTA
1 ATTTC-ACACTTAAAATTTTA
*
23492946 AGTTTCAACACTTAAATTTTTA
1 A-TTTC-ACACTTAAAATTTTA
*
23492968 ACTTCACAC-TAAAATTT
1 ATTTCACACTTAAAATTT
23492985 CAGAATTTCC
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
19 7 0.21
20 4 0.12
21 4 0.12
22 19 0.56
ACGTcount: A:0.38, C:0.17, G:0.03, T:0.42
Consensus pattern (20 bp):
ATTTCACACTTAAAATTTTA
Found at i:23492982 original size:20 final size:22
Alignment explanation
Indices: 23492931--23492984 Score: 60
Period size: 20 Copynumber: 2.5 Consensus size: 22
23492921 CTGCATTTCG
*
23492931 ACACTTAAAA-TTTTAAGTTTCA
1 ACAC-TAAAATTTTTAAGCTTCA
*
23492953 ACACTTAAATTTTTAA-CTTC-
1 ACACTAAAATTTTTAAGCTTCA
23492973 ACACTAAAATTT
1 ACACTAAAATTT
23492985 CAGAATTTCC
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
20 11 0.39
21 7 0.25
22 10 0.36
ACGTcount: A:0.41, C:0.17, G:0.02, T:0.41
Consensus pattern (22 bp):
ACACTAAAATTTTTAAGCTTCA
Found at i:23493421 original size:37 final size:37
Alignment explanation
Indices: 23493164--23493405 Score: 297
Period size: 37 Copynumber: 6.5 Consensus size: 37
23493154 CCATCGTATA
23493164 TTGAAACATGAGGACAAGTCCAGCGGATTGTCATAAC
1 TTGAAACATGAGGACAAGTCCAGCGGATTGTCATAAC
* * * * *
23493201 TTGAAGCATGATGATAAGTCCAGCGGACTGCCATAAC
1 TTGAAACATGAGGACAAGTCCAGCGGATTGTCATAAC
*
23493238 TTGAAACATGAGGACAAGTCCAGCGGAATGTCATAAC
1 TTGAAACATGAGGACAAGTCCAGCGGATTGTCATAAC
* *
23493275 TTGAAACGTGAGGACAAGTCCAGCGGAATGTCATAAC
1 TTGAAACATGAGGACAAGTCCAGCGGATTGTCATAAC
** * * *
23493312 TTGAAACGAT-AGGTTAAGTTCAACGGGTTGTCATAAC
1 TTGAAAC-ATGAGGACAAGTCCAGCGGATTGTCATAAC
* * ***
23493349 TTGAAACATAAGGAAAAGTCCAGAAAATTGTCATAAC
1 TTGAAACATGAGGACAAGTCCAGCGGATTGTCATAAC
*
23493386 TTGAAACATGACGACAAGTC
1 TTGAAACATGAGGACAAGTC
23493406 TAGCAGACTA
Statistics
Matches: 174, Mismatches: 29, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
36 2 0.01
37 171 0.98
38 1 0.01
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.22
Consensus pattern (37 bp):
TTGAAACATGAGGACAAGTCCAGCGGATTGTCATAAC
Found at i:23495644 original size:16 final size:18
Alignment explanation
Indices: 23495617--23495650 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
23495607 AGAAATTAAT
23495617 TTAAATTAA-TTTCTCAA
1 TTAAATTAATTTTCTCAA
23495634 TTAAA-TAATTTTCTCAA
1 TTAAATTAATTTTCTCAA
23495651 CTTGGTTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.19
17 13 0.81
ACGTcount: A:0.41, C:0.12, G:0.00, T:0.47
Consensus pattern (18 bp):
TTAAATTAATTTTCTCAA
Found at i:23496606 original size:15 final size:15
Alignment explanation
Indices: 23496586--23496616 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
23496576 ATAAAACATG
*
23496586 CCAATTCAACTTAAT
1 CCAATTCAACCTAAT
23496601 CCAATTCAACCTAAT
1 CCAATTCAACCTAAT
23496616 C
1 C
23496617 AACCATGCCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.32, G:0.00, T:0.29
Consensus pattern (15 bp):
CCAATTCAACCTAAT
Found at i:23498513 original size:44 final size:44
Alignment explanation
Indices: 23498458--23498559 Score: 116
Period size: 44 Copynumber: 2.3 Consensus size: 44
23498448 GATCTTTAAG
** * *
23498458 CACATGTATGAATATGCTATGATTATGAAG-TTCTTTTATGAATT
1 CACATGTATGAATACACTATGATTATAAAGTTTCTTCTATGAA-T
* * *
23498502 CACATGAATGAATCCACTATGCTTATAAAGTTTCTTCTATGAAT
1 CACATGTATGAATACACTATGATTATAAAGTTTCTTCTATGAAT
23498546 CTACATGTATGAAT
1 C-ACATGTATGAAT
23498560 CTACTTTATC
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
44 26 0.54
45 22 0.46
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (44 bp):
CACATGTATGAATACACTATGATTATAAAGTTTCTTCTATGAAT
Found at i:23498578 original size:45 final size:45
Alignment explanation
Indices: 23498459--23498816 Score: 148
Period size: 45 Copynumber: 8.0 Consensus size: 45
23498449 ATCTTTAAGC
* * * *
23498459 ACATGTATGAATATGCTATGAT-TATGAAG-TTCTTTTATGAAT-T
1 ACATGTATGAATCTACT-TTATCTATGAAGTTTCTTCTATGAATCT
* * *
23498502 CACATGAATGAATCCAC--TATGCTTATAAAGTTTCTTCTATGAATCT
1 -ACATGTATGAATCTACTTTAT-C-TATGAAGTTTCTTCTATGAATCT
* * *
23498548 ACATGTATGAATCTACTTTATCTATGAAGTTCCTTCTGT-AAGTTT
1 ACATGTATGAATCTACTTTATCTATGAAGTTTCTTCTATGAA-TCT
* * ** * *
23498593 CCATGTATGAGT-TTGTCATATCTATGAA-TCATCTTCTATGAAT-T
1 ACATGTATGAATCTACT-TTATCTATGAAGT-TTCTTCTATGAATCT
* * * * * * *
23498637 -CGTATGTTTGAATTTGCTTTATCTATGAAGTTCCTTCTGTAAATTT
1 AC--ATGTATGAATCTACTTTATCTATGAAGTTTCTTCTATGAATCT
* * * * ** * * *
23498683 GCATGTATGAGTTTGCCATATCTATGAA-TCATCTTCTTTGAATCC
1 ACATGTATGAATCTACTTTATCTATGAAGT-TTCTTCTATGAATCT
* * * * * *
23498728 GCATGTTTGAATCTACTTTATCTATGAAGTTCCTTTTGTGAATTT
1 ACATGTATGAATCTACTTTATCTATGAAGTTTCTTCTATGAATCT
* * *
23498773 ACATGTATGAGTTCGAC-ATATCTATG-AGTTATCTTCTATGAATC
1 ACATGTATGA-ATCTACTTTATCTATGAAGTT-TCTTCTATGAATC
23498817 CGCATATATA
Statistics
Matches: 232, Mismatches: 61, Indels: 41
0.69 0.18 0.12
Matches are distributed among these distances:
41 2 0.01
43 1 0.00
44 29 0.12
45 183 0.79
46 13 0.06
47 4 0.02
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.43
Consensus pattern (45 bp):
ACATGTATGAATCTACTTTATCTATGAAGTTTCTTCTATGAATCT
Found at i:23498657 original size:90 final size:89
Alignment explanation
Indices: 23498534--23498821 Score: 405
Period size: 90 Copynumber: 3.2 Consensus size: 89
23498524 TTATAAAGTT
** * *
23498534 TCTTCTATGAATCTACATGTATGAATCTACTTTATCTATGAAGTTCCTTCTGTAAGTTTCCATGT
1 TCTTCTATGAATCCGCATGTTTGAATCTACTTTATCTATGAAGTTCCTTCTGTAA-TTTACATGT
*
23498599 ATGAGTTTGTCATATCTATGAATCA
65 ATGAGTTTGACATATCTATGAATCA
* * * * *
23498624 TCTTCTATGAATTCGTATGTTTGAATTTGCTTTATCTATGAAGTTCCTTCTGTAAATTTGCATGT
1 TCTTCTATGAATCCGCATGTTTGAATCTACTTTATCTATGAAGTTCCTTCTGT-AATTTACATGT
*
23498689 ATGAGTTTGCCATATCTATGAATCA
65 ATGAGTTTGACATATCTATGAATCA
* *
23498714 TCTTCTTTGAATCCGCATGTTTGAATCTACTTTATCTATGAAGTTCCTTTTGTGAATTTACATGT
1 TCTTCTATGAATCCGCATGTTTGAATCTACTTTATCTATGAAGTTCCTTCTGT-AATTTACATGT
* * *
23498779 ATGAGTTCGACATATCTATGAGTTA
65 ATGAGTTTGACATATCTATGAATCA
23498804 TCTTCTATGAATCCGCAT
1 TCTTCTATGAATCCGCAT
23498822 ATATAAGTTT
Statistics
Matches: 175, Mismatches: 22, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
90 173 0.99
91 2 0.01
ACGTcount: A:0.25, C:0.16, G:0.15, T:0.44
Consensus pattern (89 bp):
TCTTCTATGAATCCGCATGTTTGAATCTACTTTATCTATGAAGTTCCTTCTGTAATTTACATGTA
TGAGTTTGACATATCTATGAATCA
Found at i:23513526 original size:23 final size:23
Alignment explanation
Indices: 23513496--23513544 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
23513486 AAATGGTATG
23513496 TTATGTTTAAAGTTTATACAAGC
1 TTATGTTTAAAGTTTATACAAGC
23513519 TTATGTTTAAAGTTTATACAAGC
1 TTATGTTTAAAGTTTATACAAGC
23513542 TTA
1 TTA
23513545 CTAAGCATTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.35, C:0.08, G:0.12, T:0.45
Consensus pattern (23 bp):
TTATGTTTAAAGTTTATACAAGC
Found at i:23514128 original size:37 final size:37
Alignment explanation
Indices: 23514082--23514155 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
23514072 TTTGGAAATG
* *
23514082 GTTAAATATGGTATGTTTTTCCTTAATGGACTAGATT
1 GTTAAATATGGTATGTTTTTCCTGAATAGACTAGATT
23514119 GTTAAATATGGTATGTTTTTCCTGAATAGACTAGATT
1 GTTAAATATGGTATGTTTTTCCTGAATAGACTAGATT
23514156 TATATGCACA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.28, C:0.08, G:0.19, T:0.45
Consensus pattern (37 bp):
GTTAAATATGGTATGTTTTTCCTGAATAGACTAGATT
Found at i:23516057 original size:23 final size:24
Alignment explanation
Indices: 23516024--23516069 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
23516014 GCATCACATT
*
23516024 TCATATACCAAAATCAAACCATAA
1 TCATATACCAAAACCAAACCATAA
*
23516048 TCATA-ACCAAAACCAAGCCATA
1 TCATATACCAAAACCAAACCATA
23516070 TCACATGGCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.52, C:0.28, G:0.02, T:0.17
Consensus pattern (24 bp):
TCATATACCAAAACCAAACCATAA
Found at i:23516644 original size:43 final size:44
Alignment explanation
Indices: 23516596--23516767 Score: 160
Period size: 43 Copynumber: 4.0 Consensus size: 44
23516586 AGGTCGTACA
* *
23516596 ATGCCAACGTCCCAG-TCGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGATCGTGGTCTTACACGAAATCAAATATCG
* * *
23516639 ATGCC-ACTATCCCAGATAG-GGTCTTACATGAAATCAAATA-CG
1 ATGCCAAC-GTCCCAGATCGTGGTCTTACACGAAATCAAATATCG
* ** * * *
23516681 ATGCCGATTTCCCAGA-CATGGTCTTACACATAAATCATAA-GTCG
1 ATGCCAACGTCCCAGATCGTGGTCTTACAC-GAAATCA-AATATCG
*
23516725 ATGCCAACGTCCCAGAT-GTGGTCTTACACGAAATCACATATCG
1 ATGCCAACGTCCCAGATCGTGGTCTTACACGAAATCAAATATCG
23516768 GATCCTGTGT
Statistics
Matches: 103, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 26 0.25
43 47 0.46
44 30 0.29
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (44 bp):
ATGCCAACGTCCCAGATCGTGGTCTTACACGAAATCAAATATCG
Found at i:23516738 original size:44 final size:42
Alignment explanation
Indices: 23516596--23516753 Score: 117
Period size: 44 Copynumber: 3.7 Consensus size: 42
23516586 AGGTCGTACA
* * **
23516596 ATGCCAACGTCCCAGTCGTGGTCTTACATGT-AATCAAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACATAAATC-AA-ATCG
* * *
23516639 ATGCC-ACTATCCCAGATAGGGTCTT--ACATGAAATCAAATACG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACAT-AAATCAAAT-CG
* **
23516681 ATGCCGATTTCCCAGACATGGTCTTACACATAAATCATAAGTCG
1 ATGCCAACGTCCCAGACATGGTCTTACACATAAATCA-AA-TCG
**
23516725 ATGCCAACGTCCCAGATGTGGTCTTACAC
1 ATGCCAACGTCCCAGACATGGTCTTACAC
23516754 GAAATCACAT
Statistics
Matches: 90, Mismatches: 16, Indels: 17
0.73 0.13 0.14
Matches are distributed among these distances:
41 4 0.04
42 25 0.28
43 28 0.31
44 32 0.36
45 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACATGGTCTTACACATAAATCAAATCG
Found at i:23517857 original size:13 final size:13
Alignment explanation
Indices: 23517839--23517863 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23517829 ACAAACGATA
23517839 AAATTTTCACACG
1 AAATTTTCACACG
23517852 AAATTTTCACAC
1 AAATTTTCACAC
23517864 ATACTAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:23518327 original size:22 final size:22
Alignment explanation
Indices: 23518299--23518344 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
23518289 ATTGAGCTCG
23518299 TTCCATCTTTTAATTTATGCAC
1 TTCCATCTTTTAATTTATGCAC
23518321 TTCCATCTTTTAATTTATGCAC
1 TTCCATCTTTTAATTTATGCAC
23518343 TT
1 TT
23518345 TAGTTGCTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.22, C:0.22, G:0.04, T:0.52
Consensus pattern (22 bp):
TTCCATCTTTTAATTTATGCAC
Found at i:23522998 original size:29 final size:31
Alignment explanation
Indices: 23522946--23523007 Score: 101
Period size: 29 Copynumber: 2.1 Consensus size: 31
23522936 TTTCAATAGG
*
23522946 AAAGTAATTCTCTCTCAATAGAAATTGACAA
1 AAAGTAATTCTCTCTCAATAGAAACTGACAA
23522977 AAAGTAA-T-TCTCTCAATAGAAACTGACAA
1 AAAGTAATTCTCTCTCAATAGAAACTGACAA
23523006 AA
1 AA
23523008 TAACAATATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 22 0.73
30 1 0.03
31 7 0.23
ACGTcount: A:0.48, C:0.16, G:0.10, T:0.26
Consensus pattern (31 bp):
AAAGTAATTCTCTCTCAATAGAAACTGACAA
Found at i:23523019 original size:29 final size:29
Alignment explanation
Indices: 23522958--23523021 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
23522948 AGTAATTCTC
* ** *
23522958 TCTCAATAGAAATTGACAAAAAGTAATTC
1 TCTCAATAGAAACTGACAAAAAACAATTA
23522987 TCTCAATAGAAACTGACAAAATAACAA-TA
1 TCTCAATAGAAACTGACAAAA-AACAATTA
23523016 TCTCAA
1 TCTCAA
23523022 ACTTGTATGA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 27 0.90
30 3 0.10
ACGTcount: A:0.50, C:0.17, G:0.08, T:0.25
Consensus pattern (29 bp):
TCTCAATAGAAACTGACAAAAAACAATTA
Found at i:23525109 original size:20 final size:20
Alignment explanation
Indices: 23525056--23525119 Score: 76
Period size: 20 Copynumber: 3.2 Consensus size: 20
23525046 TAAAAAATAG
* *
23525056 TAAT-TTGTAAGAGATTCAA
1 TAATCTTGTAAGATATTTAA
*
23525075 TAATCATTTTAAGATATTTAA
1 TAATC-TTGTAAGATATTTAA
*
23525096 TAATCTTGTAAGATATTTAG
1 TAATCTTGTAAGATATTTAA
23525116 TAAT
1 TAAT
23525120 TTAAAAAGTT
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
19 4 0.11
20 17 0.45
21 17 0.45
ACGTcount: A:0.41, C:0.05, G:0.11, T:0.44
Consensus pattern (20 bp):
TAATCTTGTAAGATATTTAA
Found at i:23525299 original size:20 final size:19
Alignment explanation
Indices: 23525233--23525356 Score: 65
Period size: 20 Copynumber: 6.3 Consensus size: 19
23525223 CAATAATATT
*
23525233 TTAAGTACTTTTGTAAGAAA
1 TTAAGTAATTTT-TAAGAAA
**
23525253 CTTAA-TAAGAGTTTAAGAAA
1 -TTAAGTAA-TTTTTAAGAAA
*
23525273 CTT-AGTACTTTTATAAGAAA
1 -TTAAGTAATTTT-TAAGAAA
* *
23525293 TTAAGTAATGTTTAAGAGA
1 TTAAGTAATTTTTAAGAAA
** *
23525312 TTGTGTAATTGTTTAAGAGAT
1 TTAAGTAATT-TTTAAGA-AA
*
23525333 TTAA-TAGTTTTGTAAGAAA
1 TTAAGTAATTTT-TAAGAAA
23525352 TTAAG
1 TTAAG
23525357 AACTTTTGAA
Statistics
Matches: 77, Mismatches: 18, Indels: 17
0.69 0.16 0.15
Matches are distributed among these distances:
19 25 0.32
20 44 0.57
21 8 0.10
ACGTcount: A:0.40, C:0.03, G:0.17, T:0.40
Consensus pattern (19 bp):
TTAAGTAATTTTTAAGAAA
Found at i:23527116 original size:21 final size:21
Alignment explanation
Indices: 23527071--23527116 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
23527061 TAAGGAATTC
* *
23527071 AGTAATTGTTTAATAGATCTT
1 AGTAATTGCTTAAGAGATCTT
23527092 -GTAATTTGCTTAAGAGAT-TT
1 AGTAA-TTGCTTAAGAGATCTT
23527112 AGTAA
1 AGTAA
23527117 CTCTATTAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.35, C:0.04, G:0.17, T:0.43
Consensus pattern (21 bp):
AGTAATTGCTTAAGAGATCTT
Found at i:23529857 original size:4 final size:4
Alignment explanation
Indices: 23529848--23529887 Score: 71
Period size: 4 Copynumber: 10.0 Consensus size: 4
23529838 TGTGTGCAGA
*
23529848 ACAT ACAT ACAT ACAT ACAT ACAT AAAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
23529888 CTACAATCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 34 1.00
ACGTcount: A:0.53, C:0.23, G:0.00, T:0.25
Consensus pattern (4 bp):
ACAT
Found at i:23537021 original size:9 final size:9
Alignment explanation
Indices: 23537001--23537032 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
23536991 CGATATCAAC
23537001 AAAAATAA-
1 AAAAATAAT
23537009 AAAAATAAT
1 AAAAATAAT
23537018 AAAAATAAT
1 AAAAATAAT
23537027 AAAAAT
1 AAAAAT
23537033 TATTTTAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 8 0.35
9 15 0.65
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAAAATAAT
Found at i:23537750 original size:61 final size:60
Alignment explanation
Indices: 23537652--23537800 Score: 194
Period size: 61 Copynumber: 2.5 Consensus size: 60
23537642 TTAGTCAGCC
* ** * * *
23537652 GGTGACCAAGAAAGACAAAATTAA-ATAGTTGGTTGACCATATTGTAACTTTTTATAGTT-
1 GGTGACCAAAAAAGA-AAAAAAAACATAGTTGGATGACCATATTGTAACTTTTCATAATTA
*
23537711 GAGTGACCAAAAAAGAAAAAGAAAACATAGTTGGATGACCATTTTGTAACTTTTCATAATTA
1 G-GTGACCAAAAAAGAAAAA-AAAACATAGTTGGATGACCATATTGTAACTTTTCATAATTA
23537773 GGTGACCAAAAAAGAAAAAAAAACATAG
1 GGTGACCAAAAAAGAAAAAAAAACATAG
23537801 GTGACTACTA
Statistics
Matches: 79, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
59 5 0.06
60 24 0.30
61 49 0.62
62 1 0.01
ACGTcount: A:0.46, C:0.11, G:0.17, T:0.26
Consensus pattern (60 bp):
GGTGACCAAAAAAGAAAAAAAAACATAGTTGGATGACCATATTGTAACTTTTCATAATTA
Found at i:23538860 original size:22 final size:22
Alignment explanation
Indices: 23538835--23538881 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
23538825 TTCAAGTTGA
* *
23538835 CGTTGCGATGTAGGGAGTTTCT
1 CGTTGCGACGTAAGGAGTTTCT
23538857 CGTTGCGACGTAAGGAGTTTCT
1 CGTTGCGACGTAAGGAGTTTCT
23538879 CGT
1 CGT
23538882 CACGACATGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.15, C:0.17, G:0.34, T:0.34
Consensus pattern (22 bp):
CGTTGCGACGTAAGGAGTTTCT
Found at i:23540710 original size:13 final size:13
Alignment explanation
Indices: 23540692--23540717 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
23540682 CGAAATCATA
23540692 ATTATAATAATTT
1 ATTATAATAATTT
23540705 ATTATAATAATTT
1 ATTATAATAATTT
23540718 CGATAAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
ATTATAATAATTT
Found at i:23540855 original size:17 final size:17
Alignment explanation
Indices: 23540835--23540868 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
23540825 TTTAACTGTC
23540835 AAATTAAATTAATTCAA
1 AAATTAAATTAATTCAA
*
23540852 AAATTAATTTAATTCAA
1 AAATTAAATTAATTCAA
23540869 GTGACATTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (17 bp):
AAATTAAATTAATTCAA
Found at i:23547474 original size:22 final size:21
Alignment explanation
Indices: 23547444--23547490 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
23547434 TACAAATTAA
23547444 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
23547466 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
23547487 ATCT
1 ATCT
23547491 ATGATTGCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:23547498 original size:19 final size:19
Alignment explanation
Indices: 23547461--23547522 Score: 88
Period size: 19 Copynumber: 3.2 Consensus size: 19
23547451 AGATTACAAG
23547461 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
*
23547482 ATCATATCTATGATTGCAT
1 ATCATATCTAAGATTGCAT
*
23547501 ATCATATCTAAGATTGTAT
1 ATCATATCTAAGATTGCAT
23547520 ATC
1 ATC
23547523 CTTAAAGATT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
19 29 0.76
20 1 0.03
21 8 0.21
ACGTcount: A:0.34, C:0.16, G:0.10, T:0.40
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:23548256 original size:132 final size:132
Alignment explanation
Indices: 23548100--23549205 Score: 1899
Period size: 132 Copynumber: 8.4 Consensus size: 132
23548090 ATGGAGATGC
* * *
23548100 CAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAAGGATGCCAATTTTGCTATCTTCAACTT
1 CAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTT
*
23548165 GTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCCCTGTAAGCACAGGAGT
66 GTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAGT
23548230 GT
131 GT
* **
23548232 TAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTATTATCTTCAACTT
1 CAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTT
*
23548297 GTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTTGATCTGCTTCGCTGTAAGCACAGGAGT
66 GTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAGT
23548362 GT
131 GT
* **
23548364 CAGATTTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTATTATCTTCAACTT
1 CAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTT
*
23548429 GTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTTGATCTGCTTCGCTGTAAGCACAGGAGT
66 GTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAGT
23548494 GT
131 GT
*
23548496 CAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGTTATCTTCAACTT
1 CAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTT
* *
23548561 GTTCCCTATAAAGACAGGGATGCCATGCTGAAATCTTCAATCTGCTTCGCTGTAAGCACAGGAGT
66 GTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAGT
23548626 GT
131 GT
* * *
23548628 CAGATCTGCTATCTTCGATCTGAT-CCTATAAACACAAGGATGTCAAATCTGCTATCTTCAACTT
1 CAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTT
* *
23548692 GTTCCCTATAAACACAGGGATGCTATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAGT
66 GTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAGT
23548757 GT
131 GT
*
23548759 CAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAATTT
1 CAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTT
* * *
23548824 GTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTACTTCGTTGTAAGCATAGGAGT
66 GTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAGT
23548889 GT
131 GT
*
23548891 CAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAATTCTGCTATCTTCAACTT
1 CAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTT
* *
23548956 GTTCCCTATAAACACAGGGATGCCATCCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGCAGT
66 GTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAGT
23549021 GT
131 GT
* *
23549023 TAGATCTGCTATCTTTGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTT
1 CAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTT
* * * *
23549088 GTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGTTTCACTGTAAGTATAGGAGT
66 GTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAGT
23549153 GT
131 GT
*
23549155 CAGATCTGCTATCTTCAATCTGTTCCCTATAAACACAGGGATGCCAAATCT
1 CAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCT
23549206 TGTTTCTCTG
Statistics
Matches: 922, Mismatches: 51, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
131 123 0.13
132 799 0.87
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (132 bp):
CAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTT
GTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAGT
GT
Found at i:23549066 original size:527 final size:528
Alignment explanation
Indices: 23548100--23549205 Score: 1917
Period size: 527 Copynumber: 2.1 Consensus size: 528
23548090 ATGGAGATGC
* *
23548100 CAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAAGGATGCCAATTTTGCTATCTTCAACTT
1 CAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAAGGATGCCAAATCTGCTATCTTCAACTT
*
23548165 GTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCCCTGTAAGCACAGGAGT
66 GTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAGT
* *
23548230 GTTAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTATTATCTTCAAC
131 GTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTATCTTCAAC
* *
23548295 TTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTTGATCTGCTTCGCTGTAAGCACAGGA
196 TTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTACTTCGCTGTAAGCACAGGA
* *
23548360 GTGTCAGATTTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTATTATCTTCA
261 GTGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTATCTTCA
* *
23548425 ACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTTGATCTGCTTCGCTGTAAGCACAG
326 ACTTGTTCCCTATAAACACAGGGATGCCATCCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAG
* *
23548490 GAGTGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGTTATCTT
391 CAGTGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTT
* *
23548555 CAACTTGTTCCCTATAAAGACAGGGATGCCATGCTGAAATCTTCAATCTGCTTCGCTGTAAGCAC
456 CAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCAATCTGCTTCACTGTAAGCAC
23548620 AGGAGTGT
521 AGGAGTGT
* *
23548628 CAGATCTGCTATCTTCGATCTGAT-CCTATAAACACAAGGATGTCAAATCTGCTATCTTCAACTT
1 CAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAAGGATGCCAAATCTGCTATCTTCAACTT
*
23548692 GTTCCCTATAAACACAGGGATGCTATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAGT
66 GTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAGT
* *
23548757 GTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAAT
131 GTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTATCTTCAAC
* *
23548822 TTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTACTTCGTTGTAAGCATAGGA
196 TTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTACTTCGCTGTAAGCACAGGA
* *
23548887 GTGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAATTCTGCTATCTTCA
261 GTGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTATCTTCA
23548952 ACTTGTTCCCTATAAACACAGGGATGCCATCCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAG
326 ACTTGTTCCCTATAAACACAGGGATGCCATCCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAG
* *
23549017 CAGTGTTAGATCTGCTATCTTTGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTT
391 CAGTGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTT
* * * *
23549082 CAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGTTTCACTGTAAGTAT
456 CAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCAATCTGCTTCACTGTAAGCAC
23549147 AGGAGTGT
521 AGGAGTGT
* *
23549155 CAGATCTGCTATCTTCAATCTGTTCCCTATAAACACAGGGATGCCAAATCT
1 CAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAAGGATGCCAAATCT
23549206 TGTTTCTCTG
Statistics
Matches: 543, Mismatches: 34, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
527 496 0.91
528 47 0.09
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (528 bp):
CAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAAGGATGCCAAATCTGCTATCTTCAACTT
GTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAGT
GTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTATCTTCAAC
TTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTACTTCGCTGTAAGCACAGGA
GTGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTATCTTCA
ACTTGTTCCCTATAAACACAGGGATGCCATCCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAG
CAGTGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTT
CAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCAATCTGCTTCACTGTAAGCAC
AGGAGTGT
Found at i:23549166 original size:88 final size:88
Alignment explanation
Indices: 23548095--23549200 Score: 735
Period size: 88 Copynumber: 12.6 Consensus size: 88
23548085 TCGAAATGGA
* * ** *
23548095 GATGCCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAAGGATGCCAATTTTGCTATCTTC
1 GATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCC-ATGCTGATATCTTC
*
23548160 -AACT-TGTTCCCTATAAACACAGG
65 GATCTGT-TTCCCTATAAACACAGG
* ** * * ** *
23548183 GATG-C-CATGCTGAAATCTTCGATCTGCTTCCCTGTAAGCACA-GGAGTGTTA-GATCTGCTAT
1 GATGTCAGAT-CTGCTATCTTCGATCTG-TTCCCTATAAACACAGGGA-TGCCATG--CTGATAT
23548244 CTTCGATCTG-TTCCCTATAAACACAGG
61 CTTCGATCTGTTTCCCTATAAACACAGG
* * ** * * *
23548271 GATGCCAAATCTATTATCTTC-AACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTT
1 GATGTCAGATCTGCTATCTTCGATC-TGTTCCCTATAAACACAGGGATGCCATGCTGATATCTTC
* * * *
23548335 GATCTGCTTCGCTGTAAGCACA-G
65 GATCTGTTTCCCTATAAACACAGG
*
23548358 GAGTGTCAGATTTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAAT-CT-ATTATC
1 GA-TGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCC--ATGCTGA-TATC
*
23548421 TTC-AACT-TGTTCCCTATAAACACAGG
62 TTCGATCTGT-TTCCCTATAAACACAGG
* ** * * * * * *
23548447 GATG-C-CATGCTGAAATCTTTGATCTGCTTCGCTGTAAGCACA-GGAGTGTCA-GATCTGCTAT
1 GATGTCAGAT-CTGCTATCTTCGATCTG-TTCCCTATAAACACAGGGA-TGCCATG--CTGATAT
23548508 CTTCGATCTG-TTCCCTATAAACACAGG
61 CTTCGATCTGTTTCCCTATAAACACAGG
* * * * * *
23548535 GATGCCAAATCTGTTATCTTC-AACTTGTTCCCTATAAAGACAGGGATGCCATGCTGAAATCTTC
1 GATGTCAGATCTGCTATCTTCGATC-TGTTCCCTATAAACACAGGGATGCCATGCTGATATCTTC
* * * * *
23548599 AATCTGCTTCGCTGTAAGCACA-G
65 GATCTGTTTCCCTATAAACACAGG
* * * *
23548622 GAGTGTCAGATCTGCTATCTTCGATCTGAT-CCTATAAACACAAGGATGTCAAAT-CTGCTATCT
1 GA-TGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATG-C-CATGCTGATATCT
*
23548685 TC-AACT-TGTTCCCTATAAACACAGG
63 TCGATCTGT-TTCCCTATAAACACAGG
* ** * * * * *
23548710 GATG-C-TATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACA-GGAGTGTCA-GATCTGCTAT
1 GATGTCAGAT-CTGCTATCTTCGATCTG-TTCCCTATAAACACAGGGA-TGCCATG--CTGATAT
23548771 CTTCGATCTG-TTCCCTATAAACACAGG
61 CTTCGATCTGTTTCCCTATAAACACAGG
* * * * *
23548798 GATGCCAAATCTGCTATCTTCAATTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCG
1 GATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCATGCTGATATCTTCG
** ** * * *
23548863 ATCTACTTCGTTGTAAGCATA-G
66 ATCTGTTTCCCTATAAACACAGG
* *
23548885 GAGTGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAATTCTGCTATCTT
1 GA-TGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCC-ATGCTGATATCTT
*
23548950 C-AACT-TGTTCCCTATAAACACAGG
64 CGATCTGT-TTCCCTATAAACACAGG
* ** * * * * *
23548974 GATG-C-CATCCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGCAGTGTTAG--AT-CTGCTA
1 GATGTCAGAT-CTGCTATCTTCGATCTG-TTCCCTATAA--ACA-CAGGGAT-GCCATGCTGATA
*
23549034 TCTTTGATCTG-TTCCCTATAAACACAGG
60 TCTTCGATCTGTTTCCCTATAAACACAGG
* * * *
23549062 GATGCCAAATCTGCTATCTTC-AACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTC
1 GATGTCAGATCTGCTATCTTCGATC-TGTTCCCTATAAACACAGGGATGCCATGCTGATATCTTC
* * ** *
23549126 GATCTGTTTCACTGTAAGTATA-G
65 GATCTGTTTCCCTATAAACACAGG
*
23549149 GAGTGTCAGATCTGCTATCTTCAATCTGTTCCCTATAAACACAGGGATGCCA
1 GA-TGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCA
23549201 AATCTTGTTT
Statistics
Matches: 793, Mismatches: 149, Indels: 152
0.72 0.14 0.14
Matches are distributed among these distances:
84 1 0.00
85 7 0.01
86 29 0.04
87 158 0.20
88 473 0.60
89 106 0.13
90 13 0.02
91 5 0.01
92 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.31
Consensus pattern (88 bp):
GATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCATGCTGATATCTTCG
ATCTGTTTCCCTATAAACACAGG
Found at i:23555628 original size:19 final size:19
Alignment explanation
Indices: 23555593--23555762 Score: 262
Period size: 19 Copynumber: 9.2 Consensus size: 19
23555583 AGATTACAAG
23555593 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
*
23555614 ATCATATATAAGATTGCAT
1 ATCATATCTAAGATTGCAT
23555633 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
23555650 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
23555669 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
23555686 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
23555705 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
23555722 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
*
23555741 ATCATATCTAAGATTGTAT
1 ATCATATCTAAGATTGCAT
23555760 ATC
1 ATC
23555763 CTTAAGGATT
Statistics
Matches: 140, Mismatches: 3, Indels: 14
0.89 0.02 0.09
Matches are distributed among these distances:
17 51 0.36
19 81 0.58
20 1 0.01
21 7 0.05
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:23555662 original size:36 final size:36
Alignment explanation
Indices: 23555593--23555759 Score: 289
Period size: 36 Copynumber: 4.5 Consensus size: 36
23555583 AGATTACAAG
*
23555593 ATCATATCTTCAAGATTGCATATCATATATAAGATTGCAT
1 ATCATATC-T-AAGATTG--TATCATATCTAAGATTGCAT
23555633 ATCATATCTAAGATTGTATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGTATCATATCTAAGATTGCAT
23555669 ATCATATCTAAGATTGTATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGTATCATATCTAAGATTGCAT
23555705 ATCATATCTAAGATTGTATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGTATCATATCTAAGATTGCAT
23555741 ATCATATCTAAGATTGTAT
1 ATCATATCTAAGATTGTAT
23555760 ATCCTTAAGG
Statistics
Matches: 126, Mismatches: 1, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
36 110 0.87
38 7 0.06
39 1 0.01
40 8 0.06
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.39
Consensus pattern (36 bp):
ATCATATCTAAGATTGTATCATATCTAAGATTGCAT
Found at i:23556437 original size:130 final size:130
Alignment explanation
Indices: 23556261--23556594 Score: 462
Period size: 131 Copynumber: 2.6 Consensus size: 130
23556251 ACTCATTCAA
* *
23556261 AAAATTTTTAAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAAT-TTGCCCTATCGTGCT
1 AAAATTTTTAAAACGAAGGCAATGTTCGATGTTTGGAAATTCGGGGAATCGTGCCCTATCGTGCT
* * *
23556325 GGGTTGCAATTTTCTGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTCTTTC
66 GGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTCTTTC
* *
23556390 AAAATCTTTTAAAACGAAGGTAATGTTCGATGTTTGGAAATTTGGGGAATCGTGCCCTATCGTGC
1 AAAAT-TTTTAAAACGAAGGCAATGTTCGATGTTTGGAAATTCGGGGAATCGTGCCCTATCGTGC
* *
23556455 TGGGTTGCAATTTCCCGTTTGTTTAAAATAATCGAATATCCCTTTAGAATTTCACTCATGT-TCT
65 TGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTCTTT
23556519 C
130 C
* * * * * * *
23556520 TAAA-TTCTAAAA-TAAGGCAATGTTCAATGTCTAGAAATTCGAGGAATCGTGCCCTA-CTGTGC
1 AAAATTTTTAAAACGAAGGCAATGTTCGATGTTTGGAAATTCGGGGAATCGTGCCCTATC-GTGC
*
23556582 TGGGTTTCAATTT
65 TGGGTTGCAATTT
23556595 TTTCGTTGGA
Statistics
Matches: 183, Mismatches: 19, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
126 1 0.01
127 53 0.29
128 7 0.04
129 5 0.03
130 47 0.26
131 70 0.38
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (130 bp):
AAAATTTTTAAAACGAAGGCAATGTTCGATGTTTGGAAATTCGGGGAATCGTGCCCTATCGTGCT
GGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTCTTTC
Found at i:23568222 original size:88 final size:89
Alignment explanation
Indices: 23568050--23568437 Score: 379
Period size: 88 Copynumber: 4.4 Consensus size: 89
23568040 GTGAATTCAC
* * * * * *
23568050 AGATCTTGTCTTCCTGAAGTTGCAGTGGAACAGATCAAGGACAGCAAGCCTTAACCTCCTTAGTA
1 AGATCTTGTCTCCCTAAAGTTGCAGTGGAACAAATCAAAGACAGCAAGCCTTAACCCCCTAAGTA
** *
23568115 GTAGGGTAACAGGCCGAAGATTAT
66 GTAGGGTAACAGGCTAAAAATTAT
*
23568139 AGATCTTGTCTCCCTAAAGTTGCAGTGGAACAGATCAAAGA-AGCAAGCCTTAACCCCCTAAGTA
1 AGATCTTGTCTCCCTAAAGTTGCAGTGGAACAAATCAAAGACAGCAAGCCTTAACCCCCTAAGTA
** * * **
23568203 GTAGGGTAACAAACTGAAGATTGC
66 GTAGGGTAACAGGCTAAAAATTAT
* * * * ** *
23568227 AGATCTTGTCTCCCTAAA-ATGACAGTGGAGCAAATCGAAGATAGTGAGCCTTAACCCCTTAAGT
1 AGATCTTGTCTCCCTAAAGTTG-CAGTGGAACAAATCAAAGACAGCAAGCCTTAACCCCCTAAGT
23568291 AGTAGGGTAACAGGCTAAAAATTAT
65 AGTAGGGTAACAGGCTAAAAATTAT
* * ** * * * * ** * **
23568316 AGATATTGTCT-CCTTAAGCAGTAGTGGAGCAAATCGAAGACGGTGAGCCTTAACCCTCTAAACA
1 AGATCTTGTCTCCCTAAAGTTGCAGTGGAACAAATCAAAGACAGCAAGCCTTAACCCCCTAAGTA
*
23568380 GTAGGGTAACAGGCTAAAAATTGT
66 GTAGGGTAACAGGCTAAAAATTAT
* *
23568404 -GAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAAA
1 AGA-TCTTGTCTCCCTAAAGTTGCAGTGGAACAAA
23568438 CTAAAGTTAG
Statistics
Matches: 253, Mismatches: 41, Indels: 10
0.83 0.13 0.03
Matches are distributed among these distances:
87 4 0.02
88 144 0.57
89 105 0.42
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.24
Consensus pattern (89 bp):
AGATCTTGTCTCCCTAAAGTTGCAGTGGAACAAATCAAAGACAGCAAGCCTTAACCCCCTAAGTA
GTAGGGTAACAGGCTAAAAATTAT
Found at i:23568418 original size:177 final size:177
Alignment explanation
Indices: 23568096--23568437 Score: 404
Period size: 177 Copynumber: 1.9 Consensus size: 177
23568086 AAGGACAGCA
* * * **
23568096 AGCCTTAACCTCCTTAGTAGTAGGGTAACAGGCCGAAGATTATAGATCTTGTCTCCCTAAAGTTG
1 AGCCTTAACCTCCTTAGTAGTAGGGTAACAGGCCAAAAATTATAGATATTGTCTCCCTAAAGCAG
* ** * *
23568161 CAGTGGAACAGATCAAAGAAGCAAGCCTTAACCCCCTAAGTAGTAGGGTAACAAACTGAAGATTG
66 CAGTGGAACAAATCAAAGAAGCAAGCCTTAACCCCCTAAACAGTAGGGTAACAAACTAAAAATTG
*
23568226 CAGATCTTGTCTCCCTAAA-ATGACAGTGGAGCAAATCGAAGATAGTG
131 CAGATCTTATCTCCCTAAAGATG-CAGTGGAGCAAATCGAAGATAGTG
* *
23568273 AGCCTTAACC-CCTTAAGTAGTAGGGTAACAGGCTAAAAATTATAGATATTGTCT-CCTTAAGCA
1 AGCCTTAACCTCCTT-AGTAGTAGGGTAACAGGCCAAAAATTATAGATATTGTCTCCCTAAAGCA
* * * * ** * **
23568336 GTAGTGGAGCAAATCGAAGACGGTGAGCCTTAACCCTCTAAACAGTAGGGTAACAGGCTAAAAAT
65 GCAGTGGAACAAATCAAAGA-AGCAAGCCTTAACCCCCTAAACAGTAGGGTAACAAACTAAAAAT
* *
23568401 TG-TGAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAAA
129 TGCAGA-TCTTATCTCCCTAAAGATGCAGTGGAGCAAA
23568438 CTAAAGTTAG
Statistics
Matches: 137, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
176 28 0.20
177 107 0.78
178 2 0.01
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.24
Consensus pattern (177 bp):
AGCCTTAACCTCCTTAGTAGTAGGGTAACAGGCCAAAAATTATAGATATTGTCTCCCTAAAGCAG
CAGTGGAACAAATCAAAGAAGCAAGCCTTAACCCCCTAAACAGTAGGGTAACAAACTAAAAATTG
CAGATCTTATCTCCCTAAAGATGCAGTGGAGCAAATCGAAGATAGTG
Found at i:23569291 original size:18 final size:16
Alignment explanation
Indices: 23569253--23569285 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
23569243 AACACAGAGG
*
23569253 ATAG-AAAAAAAAGTA
1 ATAGAAAAAAAAAGCA
23569268 ATAGAAAAAAAAAGCA
1 ATAGAAAAAAAAAGCA
23569284 AT
1 AT
23569286 CAAGAATAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.73, C:0.03, G:0.12, T:0.12
Consensus pattern (16 bp):
ATAGAAAAAAAAAGCA
Found at i:23571369 original size:131 final size:132
Alignment explanation
Indices: 23571205--23571465 Score: 416
Period size: 131 Copynumber: 2.0 Consensus size: 132
23571195 TAATTATTCA
* *
23571205 TTCAAAAACTCTTTAAAACGAAGGCAATGTTCGATGTTTGGCAATTTGGAGAATCATGCCCTATC
1 TTCAAAAACTCTTTAAAACAAAGGCAATGTTCGAAGTTTGGCAATTTGGAGAATCATGCCCTATC
** * * * *
23571270 GTGCTGGGTTGCAATTTTTCGTTTGTTCAAAATAATCGAATTTTCTTTTGGAATTTCACTCATGT
66 GTGCTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGT
23571335 GT
131 GT
* * *
23571337 TTCAAAATCT-TTTAAAACAAAGGTAATGTTCGAAGTTTGGCAATTTGGGGAATCATGCCCTATC
1 TTCAAAAACTCTTTAAAACAAAGGCAATGTTCGAAGTTTGGCAATTTGGAGAATCATGCCCTATC
23571401 GTGCTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGT
66 GTGCTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGT
23571466 TCTCTAAATT
Statistics
Matches: 118, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
131 109 0.92
132 9 0.08
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (132 bp):
TTCAAAAACTCTTTAAAACAAAGGCAATGTTCGAAGTTTGGCAATTTGGAGAATCATGCCCTATC
GTGCTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGT
GT
Found at i:23575473 original size:18 final size:17
Alignment explanation
Indices: 23575444--23575479 Score: 63
Period size: 18 Copynumber: 2.1 Consensus size: 17
23575434 TCACATTCTT
23575444 TCAATCTTAATTTATCA
1 TCAATCTTAATTTATCA
23575461 TCAATCATTAATTTATCA
1 TCAATC-TTAATTTATCA
23575479 T
1 T
23575480 ATAACACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.36, C:0.17, G:0.00, T:0.47
Consensus pattern (17 bp):
TCAATCTTAATTTATCA
Found at i:23577414 original size:15 final size:15
Alignment explanation
Indices: 23577383--23577413 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
23577373 TTCAAAGATC
23577383 AAGAAAGAGAAGAAA
1 AAGAAAGAGAAGAAA
23577398 AAGAAAGA-AAGAAA
1 AAGAAAGAGAAGAAA
23577412 AA
1 AA
23577414 AAGTAGAGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (15 bp):
AAGAAAGAGAAGAAA
Found at i:23584845 original size:40 final size:39
Alignment explanation
Indices: 23584800--23584900 Score: 113
Period size: 34 Copynumber: 2.7 Consensus size: 39
23584790 GTAACGGTTT
23584800 GGGCCTTAGCCCATCTCAGTACAGTATGAAATATGCAGTA
1 GGGCCTTAGCCCATCTCAGTACAGTAT-AAATATGCAGTA
* * *
23584840 GGGCCTTAGCCC-T-TC---ACAGTATCAGTATGCATTA
1 GGGCCTTAGCCCATCTCAGTACAGTATAAATATGCAGTA
*
23584874 GGGCCTTAGCCCATCACAGTATCAGTA
1 GGGCCTTAGCCCATCTCAGTA-CAGTA
23584901 GCAGCCATAC
Statistics
Matches: 51, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
34 21 0.41
35 8 0.16
36 1 0.02
38 2 0.04
39 2 0.04
40 17 0.33
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
GGGCCTTAGCCCATCTCAGTACAGTATAAATATGCAGTA
Found at i:23584876 original size:34 final size:34
Alignment explanation
Indices: 23584831--23584904 Score: 123
Period size: 34 Copynumber: 2.2 Consensus size: 34
23584821 CAGTATGAAA
*
23584831 TATGCAGTAGGGCCTTAGCCCTTCACAGTATCAG
1 TATGCAGTAGGGCCTTAGCCCATCACAGTATCAG
*
23584865 TATGCATTAGGGCCTTAGCCCATCACAGTATCAG
1 TATGCAGTAGGGCCTTAGCCCATCACAGTATCAG
23584899 TA-GCAG
1 TATGCAG
23584905 CCATACAGTA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
33 3 0.08
34 34 0.92
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (34 bp):
TATGCAGTAGGGCCTTAGCCCATCACAGTATCAG
Found at i:23589199 original size:42 final size:42
Alignment explanation
Indices: 23589140--23589225 Score: 172
Period size: 42 Copynumber: 2.0 Consensus size: 42
23589130 CTCACATCAC
23589140 ATATATTGATATCCATTATATGATTACGTGCTATGTTATTAA
1 ATATATTGATATCCATTATATGATTACGTGCTATGTTATTAA
23589182 ATATATTGATATCCATTATATGATTACGTGCTATGTTATTAA
1 ATATATTGATATCCATTATATGATTACGTGCTATGTTATTAA
23589224 AT
1 AT
23589226 GGATGTCTTT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.34, C:0.09, G:0.12, T:0.45
Consensus pattern (42 bp):
ATATATTGATATCCATTATATGATTACGTGCTATGTTATTAA
Found at i:23590484 original size:7 final size:7
Alignment explanation
Indices: 23590472--23590501 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
23590462 AAAAACTATT
23590472 ATAAAAA
1 ATAAAAA
*
23590479 ATAAAAC
1 ATAAAAA
23590486 ATAAAAA
1 ATAAAAA
23590493 ATAAAAA
1 ATAAAAA
23590500 AT
1 AT
23590502 TGATTATGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (7 bp):
ATAAAAA
Found at i:23594175 original size:74 final size:73
Alignment explanation
Indices: 23594088--23594226 Score: 224
Period size: 74 Copynumber: 1.9 Consensus size: 73
23594078 CATTATTTTC
* *
23594088 TTACCAAATTAATATATAGATACTACTTTATATTAGTTTACCAAATTAAACTAAAAATATTACCA
1 TTACCAAATTAATATATAGATACTAATTTATATTAGTTTACCAAATCAAACTAAAAAT-TTACCA
23594153 AATATATTT
65 AATATATTT
* * *
23594162 TTACCAAATTAATATTTGGATACTAATTTATATTAGTTTATCAAATCAAACTAAAAATTTACCAA
1 TTACCAAATTAATATATAGATACTAATTTATATTAGTTTACCAAATCAAACTAAAAATTTACCAA
23594227 TTTTAATGAA
Statistics
Matches: 60, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
73 7 0.12
74 53 0.88
ACGTcount: A:0.45, C:0.12, G:0.04, T:0.39
Consensus pattern (73 bp):
TTACCAAATTAATATATAGATACTAATTTATATTAGTTTACCAAATCAAACTAAAAATTTACCAA
ATATATTT
Found at i:23595083 original size:21 final size:21
Alignment explanation
Indices: 23595059--23595107 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
23595049 TATATTTAAT
23595059 ATTTATATATATTT-AATATAA
1 ATTTATAT-TATTTGAATATAA
* * *
23595080 ATTTTTATTTTTTGAATATAT
1 ATTTATATTATTTGAATATAA
23595101 ATTTATA
1 ATTTATA
23595108 AGATTTTGGA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 4 0.17
21 19 0.83
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (21 bp):
ATTTATATTATTTGAATATAA
Found at i:23595555 original size:41 final size:41
Alignment explanation
Indices: 23595497--23595640 Score: 200
Period size: 41 Copynumber: 3.5 Consensus size: 41
23595487 CCTTGAAATC
* * *
23595497 TAAGTAAATATCCATATCATGTTTGCCTTGAAGACAAAGCT
1 TAAGTAAATATCCATATCATGCTCGCCTTGAAGGCAAAGCT
**
23595538 TAAGTAAATA-CCTATATCATGCTCGCCTTGAAGGTGAAGCT
1 TAAGTAAATATCC-ATATCATGCTCGCCTTGAAGGCAAAGCT
* *
23595579 TAAGTAAATATCCATATCATACTCACCTTGAAGGCAAAGCT
1 TAAGTAAATATCCATATCATGCTCGCCTTGAAGGCAAAGCT
*
23595620 TAAGTAAATATTCATATCATG
1 TAAGTAAATATCCATATCATG
23595641 TAACACTCTA
Statistics
Matches: 90, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
40 2 0.02
41 86 0.96
42 2 0.02
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.31
Consensus pattern (41 bp):
TAAGTAAATATCCATATCATGCTCGCCTTGAAGGCAAAGCT
Found at i:23598532 original size:20 final size:21
Alignment explanation
Indices: 23598494--23598533 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
23598484 TAAGAACAAG
23598494 TTAAATAACATAGACTAACTA
1 TTAAATAACATAGACTAACTA
23598515 TTAAA-AACA-AGACATAACT
1 TTAAATAACATAGAC-TAACT
23598534 GAGCAACTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.22
20 9 0.50
21 5 0.28
ACGTcount: A:0.55, C:0.15, G:0.05, T:0.25
Consensus pattern (21 bp):
TTAAATAACATAGACTAACTA
Found at i:23601757 original size:55 final size:54
Alignment explanation
Indices: 23601616--23601758 Score: 169
Period size: 55 Copynumber: 2.6 Consensus size: 54
23601606 ATGTATGCCC
* * *
23601616 ACGCCCGTGTTAGTTTAACAGGTTCGACCACGGGTGCTAGACACGGGCCTGTTGC
1 ACGCCCGTGTT-GTTTAACAGGTTCGACCACGGGTGCTAGACACGGGCATGTCGA
* * * * *
23601671 ACGCCCGTGTTGATTTGATAGATTCAACCACGGGTTCTAGACACGGGCATGTCGA
1 ACGCCCGTGTTG-TTTAACAGGTTCGACCACGGGTGCTAGACACGGGCATGTCGA
* *
23601726 ACGCCTGTGTTGTTTTAACAGGTTCGCCCACGG
1 ACGCCCGTGTTG-TTTAACAGGTTCGACCACGG
23601759 CCATGTCGCA
Statistics
Matches: 72, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
54 1 0.01
55 71 0.99
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.26
Consensus pattern (54 bp):
ACGCCCGTGTTGTTTAACAGGTTCGACCACGGGTGCTAGACACGGGCATGTCGA
Found at i:23610083 original size:43 final size:43
Alignment explanation
Indices: 23610033--23610135 Score: 188
Period size: 43 Copynumber: 2.4 Consensus size: 43
23610023 TTGGTTTTCA
*
23610033 GCACTAAGTGAGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
23610076 GGACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
23610119 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
23610136 TTGAAATGCA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.23, C:0.15, G:0.37, T:0.25
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:23610152 original size:29 final size:29
Alignment explanation
Indices: 23610117--23610190 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
23610107 GTTGTGAGAT
* *
23610117 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
23610146 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
23610175 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
23610191 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:23610626 original size:40 final size:40
Alignment explanation
Indices: 23610582--23610738 Score: 242
Period size: 40 Copynumber: 3.9 Consensus size: 40
23610572 GAGTTACTAA
*
23610582 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
23610622 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
23610662 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * * *
23610702 ATCCGTGCTAAATCCCAAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
23610739 CGTGTATTTG
Statistics
Matches: 108, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 108 1.00
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:23610640 original size:80 final size:80
Alignment explanation
Indices: 23610503--23610732 Score: 234
Period size: 80 Copynumber: 2.9 Consensus size: 80
23610493 TCGAATGATG
** * * *
23610503 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAG-GC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGCGA-TATATCCGGGCTAAG-TCCCGAAGAGC
** *
23610564 ATTGGTGCGAGTTACTAAA
63 ATTCATGCGAGTGA-TAAA
*
23610583 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTATCCGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATATATCCGGGCTAAGTCCCGAAGAGCATT
* **
23610648 CATGCTAGTGATGTA
66 CATGCGAGTGATAAA
* * * * * *
23610663 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAATCCCAAAGAGCAAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATATATCCGGGCTAAGTCCCGAAGAGCATT
23610728 CATGC
66 CATGC
23610733 TGGTGACGTG
Statistics
Matches: 127, Mismatches: 19, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
79 1 0.01
80 102 0.80
81 18 0.14
82 6 0.05
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATATATCCGGGCTAAGTCCCGAAGAGCATT
CATGCGAGTGATAAA
Found at i:23610723 original size:120 final size:120
Alignment explanation
Indices: 23610503--23610733 Score: 281
Period size: 120 Copynumber: 1.9 Consensus size: 120
23610493 TCGAATGATG
** *
23610503 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTG
1 TCCGGGCTAAGTCCCGAAGGCTTCATGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTC
* * * *
23610568 GTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
66 GTGCGAGTGACTAAATCCGGGCTAAATCCCAAAGAGCAATCATGCTAGCGATGTA
** *
23610623 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TGTATCCGGGCTAAG-TCCCGAAGAGC
1 TCCGGGCTAAGTCCCGAAG-GC-TTCATGCTAAGTGACCATATCCGGACTAAGAT-CCGAAG-GC
* * *
23610685 ATTCGTGCTAGTGA-TATATCCGTGCTAAATCCCAAAGAGCAATCATGCT
62 ATTCGTGCGAGTGACTAAATCCGGGCTAAATCCCAAAGAGCAATCATGCT
23610734 GGTGACGTGT
Statistics
Matches: 94, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
119 1 0.01
120 67 0.71
121 20 0.21
122 6 0.06
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTCATGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTGACTAAATCCGGGCTAAATCCCAAAGAGCAATCATGCTAGCGATGTA
Found at i:23611456 original size:30 final size:31
Alignment explanation
Indices: 23611422--23611523 Score: 122
Period size: 30 Copynumber: 3.4 Consensus size: 31
23611412 AAAAAAATAA
*
23611422 AAATTGCATTTTGACCCCTAAACTTTTC-CT
1 AAATTTCATTTTGACCCCTAAACTTTTCTCT
* *
23611452 AAATTTCATTTTGACCCTTAAAC-TTTCTTT
1 AAATTTCATTTTGACCCCTAAACTTTTCTCT
* *
23611482 AAATTTCACTTAGACCCCTAAAC-TTTCAT-T
1 AAATTTCATTTTGACCCCTAAACTTTTC-TCT
23611512 AAATTTCATTTT
1 AAATTTCATTTT
23611524 AATACTAAAT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
29 4 0.06
30 57 0.92
31 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.04, T:0.44
Consensus pattern (31 bp):
AAATTTCATTTTGACCCCTAAACTTTTCTCT
Found at i:23614611 original size:73 final size:74
Alignment explanation
Indices: 23614525--23614666 Score: 250
Period size: 73 Copynumber: 1.9 Consensus size: 74
23614515 TGCTCAAACA
* *
23614525 TATATAAGCCATTTTCGCATGGGTATCCAAAAATTATACAA-TCCAAAGGGTCCATGACCCACAA
1 TATATAAGCCATTTTCGCATGGCTATCCAAAAATTATACAAGTCCAAAGGGTCCACGACCCACAA
23614589 CAAAAAGGG
66 CAAAAAGGG
*
23614598 TATATAAGCCATTTTCGCATGGCTATCCAAAATTTATACAAGTCCAAAGGGTCCACGACCCACAA
1 TATATAAGCCATTTTCGCATGGCTATCCAAAAATTATACAAGTCCAAAGGGTCCACGACCCACAA
23614663 CAAA
66 CAAA
23614667 CGGGTAGTCC
Statistics
Matches: 65, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
73 39 0.60
74 26 0.40
ACGTcount: A:0.39, C:0.24, G:0.15, T:0.23
Consensus pattern (74 bp):
TATATAAGCCATTTTCGCATGGCTATCCAAAAATTATACAAGTCCAAAGGGTCCACGACCCACAA
CAAAAAGGG
Found at i:23627869 original size:30 final size:30
Alignment explanation
Indices: 23627833--23627889 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
23627823 CATTGTTTCT
**
23627833 AATTAACCTTTTAAGATTGTGGGCTGTTAC
1 AATTAACCTTTTAAGATCATGGGCTGTTAC
23627863 AATTAACCTTTTAAGATCATGGGCTGT
1 AATTAACCTTTTAAGATCATGGGCTGT
23627890 GATGCAACCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.39
Consensus pattern (30 bp):
AATTAACCTTTTAAGATCATGGGCTGTTAC
Found at i:23632930 original size:7 final size:7
Alignment explanation
Indices: 23632920--23632945 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
23632910 ATAAATCACA
23632920 AATAAAG
1 AATAAAG
23632927 AATAAAG
1 AATAAAG
23632934 AATAAAG
1 AATAAAG
23632941 AATAA
1 AATAA
23632946 TTTAGTAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.73, C:0.00, G:0.12, T:0.15
Consensus pattern (7 bp):
AATAAAG
Found at i:23636680 original size:135 final size:134
Alignment explanation
Indices: 23636481--23636742 Score: 452
Period size: 135 Copynumber: 1.9 Consensus size: 134
23636471 TTTGAGTGTA
23636481 CAAATATATAGCTTCTTTTGAGAAGATAGAAGAAGCAATATGGCTTCAGAAGTTCCTTACGGGTC
1 CAAATATATAGCTTCTTTTGAGAAGATAGAAGAAGCAATATGGCTTCAGAAGTTCCTTACGGGTC
* * * *
23636546 TCATAGTCGTTCCTTATGTGGAAAAAAGTTATCACACTGTATTGTGATAATAGTGCGGCAAAAGT
66 TCAAAGTCATTCCTTATATGGAAAAAAGTTATCACACTGTATTGTGATAA-AGTGCGACAAAAGT
23636611 TATCT
130 TATCT
* * *
23636616 CAAATATATAGCTTCTTTTGAGAAGATAGAAGAAGTAATATGGCTTCAGAAGTTTCTTATGGGTC
1 CAAATATATAGCTTCTTTTGAGAAGATAGAAGAAGCAATATGGCTTCAGAAGTTCCTTACGGGTC
23636681 TCAAAGTCATTCCTTATATGGAAAAAAGTTATCACACTGTATTGTGATAAAGTGCGACAAAA
66 TCAAAGTCATTCCTTATATGGAAAAAAGTTATCACACTGTATTGTGATAAAGTGCGACAAAA
23636743 TCTAACACCA
Statistics
Matches: 120, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
134 11 0.09
135 109 0.91
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.32
Consensus pattern (134 bp):
CAAATATATAGCTTCTTTTGAGAAGATAGAAGAAGCAATATGGCTTCAGAAGTTCCTTACGGGTC
TCAAAGTCATTCCTTATATGGAAAAAAGTTATCACACTGTATTGTGATAAAGTGCGACAAAAGTT
ATCT
Found at i:23638107 original size:22 final size:22
Alignment explanation
Indices: 23638082--23638155 Score: 85
Period size: 22 Copynumber: 3.4 Consensus size: 22
23638072 GGACATGTCA
*
23638082 CCACTGATTTACAGATAAGCTG
1 CCACTGATTTACAGATAAACTG
* * * *
23638104 CCACTAATTTGCAAATAAACTA
1 CCACTGATTTACAGATAAACTG
* *
23638126 CCACTGAATTATAGATAAACTG
1 CCACTGATTTACAGATAAACTG
23638148 CCACTGAT
1 CCACTGAT
23638156 AACACTGATG
Statistics
Matches: 40, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
22 40 1.00
ACGTcount: A:0.38, C:0.23, G:0.12, T:0.27
Consensus pattern (22 bp):
CCACTGATTTACAGATAAACTG
Found at i:23641481 original size:20 final size:21
Alignment explanation
Indices: 23641431--23641472 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
23641421 CCTTTCAAAT
23641431 TTTC-TTA-TTTTCATTTGCA
1 TTTCATTACTTTTCATTTGCA
23641450 TTTCATTACTTTTCA-TTGCA
1 TTTCATTACTTTTCATTTGCA
23641470 TTT
1 TTT
23641473 ACTTTCTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.19
20 11 0.52
21 6 0.29
ACGTcount: A:0.17, C:0.17, G:0.05, T:0.62
Consensus pattern (21 bp):
TTTCATTACTTTTCATTTGCA
Found at i:23647790 original size:27 final size:27
Alignment explanation
Indices: 23647759--23647860 Score: 132
Period size: 27 Copynumber: 3.8 Consensus size: 27
23647749 CCCAAAATAA
* * *
23647759 GTAAAATAATTGAAATACCCCTATAGG
1 GTAAAATGACTGAAATACCCCCATAGG
* *
23647786 GTAAAATGACCGAAATACCCCCATATG
1 GTAAAATGACTGAAATACCCCCATAGG
*
23647813 TTAAAATGACTGAAATACCCCCATAGG
1 GTAAAATGACTGAAATACCCCCATAGG
**
23647840 GTAAAATGACTGTTATACCCC
1 GTAAAATGACTGAAATACCCC
23647861 TAGGAGATGA
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 64 1.00
ACGTcount: A:0.40, C:0.22, G:0.15, T:0.24
Consensus pattern (27 bp):
GTAAAATGACTGAAATACCCCCATAGG
Found at i:23649255 original size:24 final size:24
Alignment explanation
Indices: 23649206--23649255 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
23649196 GATAAGGTTG
* * *
23649206 GAAGACTCTATTCATGAGGTCTAT
1 GAAGACTCTACTCATGAAGTCGAT
23649230 GAAGACTCTACTCATGATAG-CGAT
1 GAAGACTCTACTCATGA-AGTCGAT
23649254 GA
1 GA
23649256 GAAAGGAGGA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 21 0.95
25 1 0.05
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (24 bp):
GAAGACTCTACTCATGAAGTCGAT
Found at i:23654479 original size:51 final size:51
Alignment explanation
Indices: 23654403--23654586 Score: 176
Period size: 51 Copynumber: 3.6 Consensus size: 51
23654393 TATAAACACG
* *
23654403 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATC-GATA-GATAATGGTTACA
1 TGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGA-AGGAT-ATGGTTACA
* * *
23654454 TGTGTAGTAATATGTGCAGGCTACTATGTGTACCGGAAGGCTTTGGTTACA
1 TGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGAAGGATATGGTTACA
* * * * * * * * * *
23654505 TGTGTAGTACCATGTGTAGGCTACTACGTGAACCGAAAAG-TTTGATCACG
1 TGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGAAGGATATGGTTACA
* *
23654555 TGTGTAGTACTATGTGAAGGCTACTACGTGTA
1 TGTGTAGTACTATGTGCAGGCTACTATGTGTA
23654587 TCGAATGATA
Statistics
Matches: 113, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
50 36 0.32
51 73 0.65
52 4 0.04
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.32
Consensus pattern (51 bp):
TGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGAAGGATATGGTTACA
Found at i:23656848 original size:13 final size:13
Alignment explanation
Indices: 23656830--23656858 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
23656820 GATATCTTAG
23656830 TGAAATGACTTCT
1 TGAAATGACTTCT
23656843 TGAAATGACTTCT
1 TGAAATGACTTCT
23656856 TGA
1 TGA
23656859 CTAATTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38
Consensus pattern (13 bp):
TGAAATGACTTCT
Found at i:23657925 original size:6 final size:6
Alignment explanation
Indices: 23657916--23657951 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
23657906 CACCGATCTT
* *
23657916 CCCTTT CCCTTT CCCTTC CCCTTC CCCTTC CCCTTC
1 CCCTTC CCCTTC CCCTTC CCCTTC CCCTTC CCCTTC
23657952 GCTTGACACC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.00, C:0.61, G:0.00, T:0.39
Consensus pattern (6 bp):
CCCTTC
Found at i:23657935 original size:17 final size:17
Alignment explanation
Indices: 23657913--23657947 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
23657903 AGACACCGAT
* *
23657913 CTTCCCTTTCCCTTTCC
1 CTTCCCCTTCCCCTTCC
23657930 CTTCCCCTTCCCCTTCC
1 CTTCCCCTTCCCCTTCC
23657947 C
1 C
23657948 CTTCGCTTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.00, C:0.60, G:0.00, T:0.40
Consensus pattern (17 bp):
CTTCCCCTTCCCCTTCC
Found at i:23660226 original size:22 final size:24
Alignment explanation
Indices: 23660176--23660226 Score: 56
Period size: 24 Copynumber: 2.2 Consensus size: 24
23660166 TTGCAATGCT
23660176 TTTATATTTTAATAATTGAGTATTA
1 TTTATATTTTAAT-ATTGAGTATTA
23660201 -TTATATATTTAAT-TTGA-T-TTA
1 TTTATAT-TTTAATATTGAGTATTA
23660222 TTTAT
1 TTTAT
23660227 TTATAAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
21 3 0.12
22 5 0.21
23 4 0.17
24 6 0.25
25 6 0.25
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (24 bp):
TTTATATTTTAATATTGAGTATTA
Found at i:23660376 original size:14 final size:15
Alignment explanation
Indices: 23660354--23660430 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
23660344 CAATCAAACA
23660354 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
23660368 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
23660383 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
23660403 CCAG-AAATCATTTT
1 CCAGAAAATCATTTT
* *
23660417 ACGGAAAA-CATTTT
1 CCAGAAAATCATTTT
23660431 ACTGGCAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 22 0.44
15 14 0.28
16 1 0.02
18 1 0.02
19 3 0.06
20 9 0.18
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.32
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:23660395 original size:20 final size:20
Alignment explanation
Indices: 23660370--23660409 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
23660360 AATATTTTCC
*
23660370 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
23660390 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
23660410 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:23660415 original size:34 final size:35
Alignment explanation
Indices: 23660358--23660424 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
23660348 CAAACACCAG
*
23660358 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
23660393 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
23660425 CATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:23660431 original size:14 final size:14
Alignment explanation
Indices: 23660393--23660432 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
23660383 ACAGAAAAGT
*
23660393 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
23660407 AAATCATTTTACGG
1 AAAACATTTTACAG
23660421 AAAACATTTTAC
1 AAAACATTTTAC
23660433 TGGCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:23662589 original size:16 final size:14
Alignment explanation
Indices: 23662555--23662597 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
23662545 AATTAAGTAT
23662555 TAAATTTTTATTAC
1 TAAATTTTTATTAC
*
23662569 TAAATTTTGTATGTGC
1 TAAATTTT-TAT-TAC
*
23662585 TAAATTTATATTA
1 TAAATTTTTATTA
23662598 GAAAATTGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
14 9 0.38
15 6 0.25
16 9 0.38
ACGTcount: A:0.35, C:0.05, G:0.07, T:0.53
Consensus pattern (14 bp):
TAAATTTTTATTAC
Found at i:23666304 original size:5 final size:5
Alignment explanation
Indices: 23666296--23666344 Score: 62
Period size: 5 Copynumber: 9.8 Consensus size: 5
23666286 AGAAAGTAAT
* * * *
23666296 GGTAG GGTAA GGTAG GGTAG GGTAG GATAG GATAG GGTAG GGTTG GGTA
1 GGTAG GGTAG GGTAG GGTAG GGTAG GGTAG GGTAG GGTAG GGTAG GGTA
23666345 AAAAGTCAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
5 38 1.00
ACGTcount: A:0.24, C:0.00, G:0.53, T:0.22
Consensus pattern (5 bp):
GGTAG
Found at i:23672353 original size:31 final size:31
Alignment explanation
Indices: 23672273--23672353 Score: 90
Period size: 31 Copynumber: 2.6 Consensus size: 31
23672263 TGTCATCCCG
* * * * *
23672273 GATTGCCCAAGGACGATGACATGCCACCCTA
1 GATTGCCCGATGACGATGGCATACCACCCCA
* * *
23672304 GTTTGCCCGGTGACGATGGCTTACCACCCCA
1 GATTGCCCGATGACGATGGCATACCACCCCA
23672335 GATTGCCCGATGACGATGG
1 GATTGCCCGATGACGATGG
23672354 TTTATCAATT
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (31 bp):
GATTGCCCGATGACGATGGCATACCACCCCA
Found at i:23673198 original size:32 final size:32
Alignment explanation
Indices: 23673149--23673212 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 32
23673139 AATTTAATCC
* *
23673149 ATTTAATGTAAAAAAACATTATAA-AACAATA
1 ATTTAATATAAAAAAACAATATAATAACAATA
23673180 ATTTAACTATAAAAAAACAATATAATAACAATA
1 ATTTAA-TATAAAAAAACAATATAATAACAATA
23673213 TATCATTAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 6 0.21
32 16 0.55
33 7 0.24
ACGTcount: A:0.62, C:0.08, G:0.02, T:0.28
Consensus pattern (32 bp):
ATTTAATATAAAAAAACAATATAATAACAATA
Found at i:23688275 original size:40 final size:40
Alignment explanation
Indices: 23688231--23688494 Score: 360
Period size: 40 Copynumber: 6.7 Consensus size: 40
23688221 GCTCCTCGTT
* *
23688231 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
23688271 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
23688311 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
23688351 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
23688391 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
23688430 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCA
23688471 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
23688495 CATCATTCAA
Statistics
Matches: 206, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
38 2 0.01
39 49 0.24
40 146 0.71
41 9 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:23696764 original size:45 final size:44
Alignment explanation
Indices: 23696700--23696871 Score: 236
Period size: 45 Copynumber: 3.8 Consensus size: 44
23696690 TACTGAGTAT
*
23696700 CATTGATTATAAAGGTGGTTGCTATGTGTTGATTCCACCTGGTAC
1 CATTGATTATAAAGGTGGTTGCTATATGTTGATTCCACC-GGTAC
*
23696745 CATTGATTATAAAGGTGGTTGCTATGTGTTGATTCCACCGGGTAC
1 CATTGATTATAAAGGTGGTTGCTATATGTTGATTCCACC-GGTAC
* * * *
23696790 CATTGATTATAAAGGTGGTTGCTATATGTTGACTGCACCGGAAAT
1 CATTGATTATAAAGGTGGTTGCTATATGTTGATTCCACCGG-TAC
** *
23696835 CATTGAAAATAAATGTGGTTGCTATATGTTGATTCCA
1 CATTGATTATAAAGGTGGTTGCTATATGTTGATTCCA
23696872 ACGAATATAA
Statistics
Matches: 115, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
44 2 0.02
45 113 0.98
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.36
Consensus pattern (44 bp):
CATTGATTATAAAGGTGGTTGCTATATGTTGATTCCACCGGTAC
Found at i:23696885 original size:45 final size:46
Alignment explanation
Indices: 23696700--23696897 Score: 235
Period size: 45 Copynumber: 4.4 Consensus size: 46
23696690 TACTGAGTAT
*
23696700 CATTGATTATAAAGGTGGTTGCTATGTGTTGATTCCACCTGG--TAC
1 CATTGATTATAAAGGTGGTTGCTATATGTTGATTCCACC-GGAATAC
* *
23696745 CATTGATTATAAAGGTGGTTGCTATGTGTTGATTCCACCGG-GTAC
1 CATTGATTATAAAGGTGGTTGCTATATGTTGATTCCACCGGAATAC
* * *
23696790 CATTGATTATAAAGGTGGTTGCTATATGTTGACTGCACCGGAA-AT
1 CATTGATTATAAAGGTGGTTGCTATATGTTGATTCCACCGGAATAC
** * * *
23696835 CATTGAAAATAAATGTGGTTGCTATATGTTGATTCCAAC-GAATAT
1 CATTGATTATAAAGGTGGTTGCTATATGTTGATTCCACCGGAATAC
* *
23696880 AATTGATTATAAGGGTGG
1 CATTGATTATAAAGGTGG
23696898 CAATGTGCTG
Statistics
Matches: 134, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
44 5 0.04
45 129 0.96
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35
Consensus pattern (46 bp):
CATTGATTATAAAGGTGGTTGCTATATGTTGATTCCACCGGAATAC
Found at i:23698143 original size:88 final size:88
Alignment explanation
Indices: 23697994--23698164 Score: 342
Period size: 88 Copynumber: 1.9 Consensus size: 88
23697984 CTCATTCATG
23697994 CTTATAATGCTTATGTTATATGTTTATTTGACTGGCATATTTGGTATACATGCTTAGGCTTTGGC
1 CTTATAATGCTTATGTTATATGTTTATTTGACTGGCATATTTGGTATACATGCTTAGGCTTTGGC
23698059 CAAGTTGTGGCGGGATTACCATA
66 CAAGTTGTGGCGGGATTACCATA
23698082 CTTATAATGCTTATGTTATATGTTTATTTGACTGGCATATTTGGTATACATGCTTAGGCTTTGGC
1 CTTATAATGCTTATGTTATATGTTTATTTGACTGGCATATTTGGTATACATGCTTAGGCTTTGGC
23698147 CAAGTTGTGGCGGGATTA
66 CAAGTTGTGGCGGGATTA
23698165 TGCCATATTA
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
88 83 1.00
ACGTcount: A:0.22, C:0.13, G:0.23, T:0.42
Consensus pattern (88 bp):
CTTATAATGCTTATGTTATATGTTTATTTGACTGGCATATTTGGTATACATGCTTAGGCTTTGGC
CAAGTTGTGGCGGGATTACCATA
Found at i:23702177 original size:45 final size:45
Alignment explanation
Indices: 23702113--23702198 Score: 127
Period size: 45 Copynumber: 1.9 Consensus size: 45
23702103 TGTACTGAGT
** * *
23702113 ATCATTGATTATAAAGGTGGTTGCTATGTGTTGACTCCACCGGAA
1 ATCATTGAAAATAAAGGTGGTTGCTATATGCTGACTCCACCGGAA
*
23702158 ATCATTGAAAATAAAGGTGGTTGCTATATGCTGATTCCACC
1 ATCATTGAAAATAAAGGTGGTTGCTATATGCTGACTCCACC
23702199 AAATATAATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (45 bp):
ATCATTGAAAATAAAGGTGGTTGCTATATGCTGACTCCACCGGAA
Found at i:23702210 original size:45 final size:45
Alignment explanation
Indices: 23702123--23702210 Score: 115
Period size: 45 Copynumber: 2.0 Consensus size: 45
23702113 ATCATTGATT
* * * *
23702123 ATAAAGGTGGTTGCTATGTGTTGACTCCACCGGAAATCATTGAAA
1 ATAAAGGTGGTTGCTATATGCTGACTCCACCGAAAATAATTGAAA
*
23702168 ATAAAGGTGGTTGCTATATGCTGATTCCACC-AAATATAATTGA
1 ATAAAGGTGGTTGCTATATGCTGACTCCACCGAAA-ATAATTGA
23702211 TTATAAGGAT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
44 2 0.05
45 35 0.95
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.31
Consensus pattern (45 bp):
ATAAAGGTGGTTGCTATATGCTGACTCCACCGAAAATAATTGAAA
Found at i:23705528 original size:26 final size:24
Alignment explanation
Indices: 23705499--23705575 Score: 82
Period size: 26 Copynumber: 3.0 Consensus size: 24
23705489 ACGAATTTTC
*
23705499 TCAAATTTTTACCAGGGGTAAAATTG
1 TCAAAATTTTA-C-GGGGTAAAATTG
*
23705525 TCAAAATTTTATCGGGAGTAAAATCG
1 TCAAAATTTTA-CGGG-GTAAAATTG
*
23705551 TAAAAATTTTACTGGGGTAAAATTG
1 TCAAAATTTTAC-GGGGTAAAATTG
23705576 AGTTAAGAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
25 12 0.27
26 32 0.73
ACGTcount: A:0.38, C:0.09, G:0.19, T:0.34
Consensus pattern (24 bp):
TCAAAATTTTACGGGGTAAAATTG
Found at i:23710752 original size:40 final size:40
Alignment explanation
Indices: 23710697--23711046 Score: 592
Period size: 40 Copynumber: 8.8 Consensus size: 40
23710687 ATTTGAATAC
23710697 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
23710737 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
23710777 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
23710817 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
23710857 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
23710897 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
23710937 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
23710977 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
23711017 ACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
23711047 TTGTGGTTAT
Statistics
Matches: 291, Mismatches: 19, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 291 1.00
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
Found at i:23711062 original size:80 final size:80
Alignment explanation
Indices: 23710697--23711046 Score: 655
Period size: 80 Copynumber: 4.4 Consensus size: 80
23710687 ATTTGAATAC
*
23710697 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
23710762 TGTGCGAGTTGATAT
66 TGTGCGAGTTGATAT
23710777 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
23710842 TGTGCGAGTTGATAT
66 TGTGCGAGTTGATAT
23710857 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
23710922 TGTGCGAGTTGATAT
66 TGTGCGAGTTGATAT
23710937 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
* *
23711002 CGTGCGAGTTGCTAT
66 TGTGCGAGTTGATAT
* *
23711017 ACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGC
23711047 TTGTGGTTAT
Statistics
Matches: 265, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
80 265 1.00
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGTTGATAT
Found at i:23723849 original size:20 final size:20
Alignment explanation
Indices: 23723824--23723871 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
23723814 AACTAAAGTA
* *
23723824 AGCTAAAAATGATCTCATTG
1 AGCTAAAAACGAGCTCATTG
*
23723844 AGCTAAGAACGAGCTCATTG
1 AGCTAAAAACGAGCTCATTG
23723864 AGCTAAAA
1 AGCTAAAA
23723872 TTGAGCTGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.42, C:0.17, G:0.19, T:0.23
Consensus pattern (20 bp):
AGCTAAAAACGAGCTCATTG
Found at i:23723877 original size:20 final size:19
Alignment explanation
Indices: 23723824--23723878 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 19
23723814 AACTAAAGTA
*
23723824 AGCTAAAAATGATCTCATTG
1 AGCT-AAAATGAGCTCATTG
*
23723844 AGCTAAGAACGAGCTCATTG
1 AGCTAA-AATGAGCTCATTG
23723864 AGCTAAAATTGAGCT
1 AGCTAAAA-TGAGCT
23723879 GAATTGAACT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 4 0.13
20 26 0.87
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.25
Consensus pattern (19 bp):
AGCTAAAATGAGCTCATTG
Found at i:23726799 original size:40 final size:40
Alignment explanation
Indices: 23726762--23726907 Score: 215
Period size: 40 Copynumber: 3.6 Consensus size: 40
23726752 GCTACTCGTT
* *
23726762 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
23726802 CAAATGCCTTCGGGACTTAACCTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
23726842 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTTAGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCA
*
23726883 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
23726908 CATCATTCAA
Statistics
Matches: 98, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
40 88 0.90
41 10 0.10
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:23727454 original size:282 final size:282
Alignment explanation
Indices: 23726950--23727512 Score: 1099
Period size: 282 Copynumber: 2.0 Consensus size: 282
23726940 AAATCATGGC
*
23726950 ACATTCGTATTTCATTTTCGTTAACAAAACTCAAACGCAAGACACTTATCATTCTTGCAATTTCG
1 ACATTCGTATTTCATTTTCGTTAACAAAACTCAAACACAAGACACTTATCATTCTTGCAATTTCG
23727015 GCTCAATAGCCACACACAAAGAGCATGATTTTGATTTGCTTAAAACATGATCTAATCAAATCATA
66 GCTCAATAGCCACACACAAAGAGCATGATTTTGATTTGCTTAAAACATGATCTAATCAAATCATA
23727080 ATTTAAGCTCTTTTACTCAAGAACTTACCTCGGATGTTGTCGAATGATTCCGATAGCTATTCGAC
131 ATTTAAGCTCTTTTACTCAAGAACTTACCTCGGATGTTGTCGAATGATTCCGATAGCTATTCGAC
23727145 CACTTTTTCCTTCCCTTTATCGGATTTAGATCCCCTTTGCTCTTGAGCTTAATTAGACAAATAAA
196 CACTTTTTCCTTCCCTTTATCGGATTTAGATCCCCTTTGCTCTTGAGCTTAATTAGACAAATAAA
23727210 TTGATTTAATCATTTGAGCATT
261 TTGATTTAATCATTTGAGCATT
* *
23727232 ACATTCGTATTTCGTTTTCGTTAGCAAAACTCAAACACAAGACACTTATCATTCTTGCAATTTCG
1 ACATTCGTATTTCATTTTCGTTAACAAAACTCAAACACAAGACACTTATCATTCTTGCAATTTCG
23727297 GCTCAATAGCCACACACAAAGAGCATGATTTTGATTTGCTTAAAACATGATCTAATCAAATCATA
66 GCTCAATAGCCACACACAAAGAGCATGATTTTGATTTGCTTAAAACATGATCTAATCAAATCATA
23727362 ATTTAAGCTCTTTTACTCAAGAACTTACCTCGGATGTTGTCGAATGATTCCGATAGCTATTCGAC
131 ATTTAAGCTCTTTTACTCAAGAACTTACCTCGGATGTTGTCGAATGATTCCGATAGCTATTCGAC
23727427 CACTTTTTCCTTCCCTTTATCGGATTTAGATCCCCTTTGCTCTTGAGCTTAATTAGACAAATAAA
196 CACTTTTTCCTTCCCTTTATCGGATTTAGATCCCCTTTGCTCTTGAGCTTAATTAGACAAATAAA
23727492 TTGATTTAATCATTTGAGCAT
261 TTGATTTAATCATTTGAGCAT
23727513 CGAAAACTTA
Statistics
Matches: 278, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
282 278 1.00
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (282 bp):
ACATTCGTATTTCATTTTCGTTAACAAAACTCAAACACAAGACACTTATCATTCTTGCAATTTCG
GCTCAATAGCCACACACAAAGAGCATGATTTTGATTTGCTTAAAACATGATCTAATCAAATCATA
ATTTAAGCTCTTTTACTCAAGAACTTACCTCGGATGTTGTCGAATGATTCCGATAGCTATTCGAC
CACTTTTTCCTTCCCTTTATCGGATTTAGATCCCCTTTGCTCTTGAGCTTAATTAGACAAATAAA
TTGATTTAATCATTTGAGCATT
Found at i:23727524 original size:45 final size:45
Alignment explanation
Indices: 23727474--23727563 Score: 144
Period size: 45 Copynumber: 2.0 Consensus size: 45
23727464 TGCTCTTGAG
* * * *
23727474 CTTAATTAGACAAATAAATTGATTTAATCATTTGAGCATCGAAAA
1 CTTAATTAAACAAACAAACTGATTTAATCATTTGAGCATAGAAAA
23727519 CTTAATTAAACAAACAAACTGATTTAATCATTTGAGCATAGAAAA
1 CTTAATTAAACAAACAAACTGATTTAATCATTTGAGCATAGAAAA
23727564 GAGGAACACA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.31
Consensus pattern (45 bp):
CTTAATTAAACAAACAAACTGATTTAATCATTTGAGCATAGAAAA
Found at i:23735056 original size:40 final size:40
Alignment explanation
Indices: 23735019--23735230 Score: 295
Period size: 40 Copynumber: 5.3 Consensus size: 40
23735009 GCTACTCGTT
* *
23735019 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
23735059 CAAATGCCTTCGGGACTTAACCTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
23735099 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** *
23735139 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
* * * *
23735179 CAAATGCCTTCGGG-CTTAGCCTGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
23735218 CAAATGCCTTCGG
1 CAAATGCCTTCGG
23735231 ATCTTAGTCC
Statistics
Matches: 157, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 36 0.23
40 117 0.75
41 4 0.03
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:23735103 original size:80 final size:81
Alignment explanation
Indices: 23734986--23735282 Score: 310
Period size: 80 Copynumber: 3.7 Consensus size: 81
23734976 AAATCACGTA
* * ** *
23734986 CCTTCGGAAT-TTA-ACCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGCCCGGTTAT
1 CCTTCGGGATCTTAGACCGGATTTAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
23735048 AGTAACTCGCACAAATG
65 AGTAACTCGCACAAATG
*
23735065 CCTTCGGGA-CTTA-ACCTGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT-
1 CCTTCGGGATCTTAGACC-GGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTA
23735127 TAGTAACTCGCACAAATG
64 TAGTAACTCGCACAAATG
* * * *
23735145 CCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTACAAATGCCTTCGGG-CTTAGCCTGG-AATT
1 CCTTCGGGATCTTAGACCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-T
*
23735207 AGTATCTCGCACAAATG
65 AGTAACTCGCACAAATG
* * * * * * *
23735224 CCTTC-GGATCTTAGTCCGAATATGGTCACTTAGCACAAA-GCCTTCTGGACTTAGCCCGG
1 CCTTCGGGATCTTAGACCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCGG
23735283 ACATCATTCA
Statistics
Matches: 188, Mismatches: 20, Indels: 19
0.83 0.09 0.08
Matches are distributed among these distances:
79 76 0.40
80 108 0.57
81 4 0.02
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.28
Consensus pattern (81 bp):
CCTTCGGGATCTTAGACCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
GTAACTCGCACAAATG
Found at i:23735277 original size:119 final size:120
Alignment explanation
Indices: 23735019--23735283 Score: 333
Period size: 119 Copynumber: 2.2 Consensus size: 120
23735009 GCTACTCGTT
*
23735019 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCTG
1 CAAATGCCTTC-GGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCTG
* * * *
23735083 GATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
65 GAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAATATAGTAACTAGCA
* * *
23735139 CAAATGCCTTCGGATCTTAGTCCGGATT-TAGTAACTCGTACAAATGCCTTCGGG-CTTAGCCTG
1 CAAATGCCTTCGGA-CTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCTG
* ** * *
23735202 GAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGAATATGGTCACTTAGCA
65 GAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGAATATAGTAAC-TAGCA
23735259 CAAA-GCCTTCTGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAGCCCGGA
23735284 CATCATTCAA
Statistics
Matches: 126, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
118 3 0.02
119 66 0.52
120 55 0.44
121 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (120 bp):
CAAATGCCTTCGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCTGG
AATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAATATAGTAACTAGCA
Found at i:23737134 original size:17 final size:18
Alignment explanation
Indices: 23737112--23737149 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
23737102 ATATCACTCA
*
23737112 TTTCTTT-TGCACTCTCG
1 TTTCTTTCTGCAATCTCG
*
23737129 TTTCTTTCTTCAATCTCG
1 TTTCTTTCTGCAATCTCG
23737147 TTT
1 TTT
23737150 TCAATTTTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.08, C:0.26, G:0.08, T:0.58
Consensus pattern (18 bp):
TTTCTTTCTGCAATCTCG
Found at i:23739869 original size:20 final size:20
Alignment explanation
Indices: 23739844--23739891 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
23739834 AACTAAACTA
23739844 AGCTAAAAACGAGCTCATTG
1 AGCTAAAAACGAGCTCATTG
*
23739864 AGCTAAGAACGAGCTCATTG
1 AGCTAAAAACGAGCTCATTG
23739884 AGCTAAAA
1 AGCTAAAA
23739892 TTAAGCTGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.42, C:0.19, G:0.21, T:0.19
Consensus pattern (20 bp):
AGCTAAAAACGAGCTCATTG
Found at i:23757787 original size:22 final size:21
Alignment explanation
Indices: 23757742--23757784 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 21
23757732 TAAGCTAAGT
23757742 TTATAAAAATTAATATATAAA
1 TTATAAAAATTAATATATAAA
23757763 TTATAAATAATATAATTATATA
1 TTATAAA-AAT-TAA-TATATA
23757785 TTAAAGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.37
22 3 0.16
23 3 0.16
24 6 0.32
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
TTATAAAAATTAATATATAAA
Found at i:23762934 original size:48 final size:47
Alignment explanation
Indices: 23762857--23762947 Score: 139
Period size: 48 Copynumber: 1.9 Consensus size: 47
23762847 TTTATATGGA
* *
23762857 TTATGTGGTCGTTATTAGCAATTATGTGGTGGCTTGTCCACAATGTG
1 TTATGTGGTCGTTATGAGCAATTATGTGGTGGCTTATCCACAATGTG
23762904 TTATGTGGTCGTCTATCGA-CAATTATGTGGTGGCTTATCCACAA
1 TTATGTGGTCGT-TAT-GAGCAATTATGTGGTGGCTTATCCACAA
23762948 ATGGTGTGTT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
47 12 0.30
48 27 0.68
49 1 0.03
ACGTcount: A:0.21, C:0.15, G:0.25, T:0.38
Consensus pattern (47 bp):
TTATGTGGTCGTTATGAGCAATTATGTGGTGGCTTATCCACAATGTG
Found at i:23762942 original size:22 final size:22
Alignment explanation
Indices: 23762875--23762947 Score: 67
Period size: 22 Copynumber: 3.1 Consensus size: 22
23762865 TCGTTATTAG
*
23762875 CAATTATGTGGTGGCTTGTCCA
1 CAATTATGTGGTGGCTTATCCA
* *
23762897 CAATGTGTTATGTGGTCG-TCTATCGA
1 CAA----TTATGTGGTGGCT-TATCCA
23762923 CAATTATGTGGTGGCTTATCCA
1 CAATTATGTGGTGGCTTATCCA
23762945 CAA
1 CAA
23762948 ATGGTGTGTT
Statistics
Matches: 40, Mismatches: 5, Indels: 12
0.70 0.09 0.21
Matches are distributed among these distances:
22 21 0.52
23 1 0.03
25 1 0.03
26 17 0.43
ACGTcount: A:0.22, C:0.18, G:0.25, T:0.36
Consensus pattern (22 bp):
CAATTATGTGGTGGCTTATCCA
Done.