Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 70 of 313
Found at i:23767541 original size:29 final size:28
Alignment explanation
Indices: 23767491--23767559 Score: 84
Period size: 29 Copynumber: 2.4 Consensus size: 28
23767481 ATTGTACATG
*
23767491 GGCTAACACATGGTCGTATGTCACACAC
1 GGCTAACACACGGTCGTATGTCACACAC
* * *
23767519 AGGCTAACACACGGTTGTGTGTCATACAC
1 -GGCTAACACACGGTCGTATGTCACACAC
23767548 GAGCTAACACAC
1 G-GCTAACACAC
23767560 AACCGTGTGC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 1 0.03
29 34 0.97
ACGTcount: A:0.30, C:0.28, G:0.22, T:0.20
Consensus pattern (28 bp):
GGCTAACACACGGTCGTATGTCACACAC
Found at i:23768932 original size:13 final size:13
Alignment explanation
Indices: 23768914--23768938 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23768904 ATTTGACAAA
23768914 CAACCACCACCTT
1 CAACCACCACCTT
23768927 CAACCACCACCT
1 CAACCACCACCT
23768939 AAAATTCCTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.56, G:0.00, T:0.12
Consensus pattern (13 bp):
CAACCACCACCTT
Found at i:23770362 original size:48 final size:48
Alignment explanation
Indices: 23770296--23770431 Score: 134
Period size: 48 Copynumber: 2.9 Consensus size: 48
23770286 TTATCTACAA
* * *
23770296 TTATGTGGCCA-TTATCGGCAACTCTATG-G-TGGCTTGTCCACAATGTG
1 TTATGTGGTCATTTATCGGC-A-TCTATGTGATGGCTTCTCCACAAAGTG
* *
23770343 TTATGTGGTCATTTATCGGCATTTATGTGATGGGTTCTCCACAAAGTG
1 TTATGTGGTCATTTATCGGCATCTATGTGATGGCTTCTCCACAAAGTG
* * * * * *
23770391 TTATGTGGTTATTTATCGACATTTATTTGGTGGCTTATCCA
1 TTATGTGGTCATTTATCGGCATCTATGTGATGGCTTCTCCA
23770432 TAAATGGTGT
Statistics
Matches: 75, Mismatches: 11, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
46 5 0.07
47 12 0.16
48 58 0.77
ACGTcount: A:0.20, C:0.16, G:0.24, T:0.40
Consensus pattern (48 bp):
TTATGTGGTCATTTATCGGCATCTATGTGATGGCTTCTCCACAAAGTG
Found at i:23773954 original size:38 final size:38
Alignment explanation
Indices: 23773903--23773979 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
23773893 CGGCACCCTT
23773903 TCTTGGCAACAAAGATCGATCAAACTCCATCTTTTCAA
1 TCTTGGCAACAAAGATCGATCAAACTCCATCTTTTCAA
23773941 TCTTGGCAACAAAGATCGATCAAACTCCATCTTTTCAA
1 TCTTGGCAACAAAGATCGATCAAACTCCATCTTTTCAA
23773979 T
1 T
23773980 TGTTCTTGCC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.34, C:0.26, G:0.10, T:0.30
Consensus pattern (38 bp):
TCTTGGCAACAAAGATCGATCAAACTCCATCTTTTCAA
Found at i:23779389 original size:20 final size:20
Alignment explanation
Indices: 23779364--23779402 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
23779354 TACTTTCTTT
23779364 TTTACTTACTCT-CTTACTTG
1 TTTACTTACT-TGCTTACTTG
23779384 TTTACTTACTTGCTTACTT
1 TTTACTTACTTGCTTACTT
23779403 CAATAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.15, C:0.23, G:0.05, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTGCTTACTTG
Found at i:23783911 original size:79 final size:82
Alignment explanation
Indices: 23783800--23783984 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
23783790 GCTACTCGTT
* * *
23783800 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
23783863 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
23783880 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
23783943 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
23783960 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
23783985 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:23783984 original size:40 final size:40
Alignment explanation
Indices: 23783781--23783984 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
23783771 CGGAATTTAA
** *
23783781 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
23783821 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
23783861 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
23783900 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
23783940 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
23783980 CCGGA
1 CCGGA
23783985 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:23784414 original size:149 final size:149
Alignment explanation
Indices: 23784157--23784456 Score: 600
Period size: 149 Copynumber: 2.0 Consensus size: 149
23784147 TCAAATCATA
23784157 ATTTAAGCTCTTTTACTCAAGAACTTACCTCGGGTGTTGTCGAACGATTCCGATAGCTATTCGAC
1 ATTTAAGCTCTTTTACTCAAGAACTTACCTCGGGTGTTGTCGAACGATTCCGATAGCTATTCGAC
23784222 CACTTTTTCCTTCCCTTTATCGGATTTAGTTCCCCTTTGCTCTTGAGCTTAATTAAACAAATAAA
66 CACTTTTTCCTTCCCTTTATCGGATTTAGTTCCCCTTTGCTCTTGAGCTTAATTAAACAAATAAA
23784287 TTGATTTAATCATTTGAGC
131 TTGATTTAATCATTTGAGC
23784306 ATTTAAGCTCTTTTACTCAAGAACTTACCTCGGGTGTTGTCGAACGATTCCGATAGCTATTCGAC
1 ATTTAAGCTCTTTTACTCAAGAACTTACCTCGGGTGTTGTCGAACGATTCCGATAGCTATTCGAC
23784371 CACTTTTTCCTTCCCTTTATCGGATTTAGTTCCCCTTTGCTCTTGAGCTTAATTAAACAAATAAA
66 CACTTTTTCCTTCCCTTTATCGGATTTAGTTCCCCTTTGCTCTTGAGCTTAATTAAACAAATAAA
23784436 TTGATTTAATCATTTGAGC
131 TTGATTTAATCATTTGAGC
23784455 AT
1 AT
23784457 CGAAAAGAGG
Statistics
Matches: 151, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
149 151 1.00
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (149 bp):
ATTTAAGCTCTTTTACTCAAGAACTTACCTCGGGTGTTGTCGAACGATTCCGATAGCTATTCGAC
CACTTTTTCCTTCCCTTTATCGGATTTAGTTCCCCTTTGCTCTTGAGCTTAATTAAACAAATAAA
TTGATTTAATCATTTGAGC
Found at i:23784925 original size:251 final size:251
Alignment explanation
Indices: 23784482--23784983 Score: 986
Period size: 251 Copynumber: 2.0 Consensus size: 251
23784472 AAGGCACTTA
23784482 GCCCATATTTATACATTAGACATTAAAGTCACATATGTACGGAATCATGAATCAAACTCAACATT
1 GCCCATATTTATACATTAGACATTAAAGTCACATATGTACGGAATCATGAATCAAACTCAACATT
23784547 TTAGCTAATTTTTCCCCCTTGGCCGAATTTTCTAAGCCAAGACAAAAGCATCAATATGCTTGCCT
66 TTAGCTAATTTTTCCCCCTTGGCCGAATTTTCTAAGCCAAGACAAAAGCATCAATATGCTTGCCT
23784612 CTAACCGAATACATGCGACACCAATCTCCTTCCTATGGCCGAATATGCATGTCTATGTTGGGGCC
131 CTAACCGAATACATGCGACACCAATCTCCTTCCTATGGCCGAATATGCATGTCTATGTTGGGGCC
* *
23784677 GATTTCAACACTTAATACATTCTACAAGTATGGTCACTTGTATTGACTAAACACCC
196 GATTGCAACACTTAATACATTCTACAAGTATGGTCACTTATATTGACTAAACACCC
23784733 GCCCATATTTATACATTAGACATTAAAGTCACATATGTACGGAATCATGAATCAAACTCAACATT
1 GCCCATATTTATACATTAGACATTAAAGTCACATATGTACGGAATCATGAATCAAACTCAACATT
23784798 TTAGCTAATTTTTCCCCCTTGGCCGAATTTTCTAAGCCAAGACAAAAGCATCAATATGCTTGCCT
66 TTAGCTAATTTTTCCCCCTTGGCCGAATTTTCTAAGCCAAGACAAAAGCATCAATATGCTTGCCT
23784863 CTAACCGAATACATGCGACACCAATCTCCTTCCTATGGCCGAATATGCATGTCTATGTTGGGGCC
131 CTAACCGAATACATGCGACACCAATCTCCTTCCTATGGCCGAATATGCATGTCTATGTTGGGGCC
23784928 GATTGCAACACTTAATACATTCTACAAGTATGGTCACTTATATTGACTAAACACCC
196 GATTGCAACACTTAATACATTCTACAAGTATGGTCACTTATATTGACTAAACACCC
23784984 TTTTGTTTCA
Statistics
Matches: 249, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
251 249 1.00
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.30
Consensus pattern (251 bp):
GCCCATATTTATACATTAGACATTAAAGTCACATATGTACGGAATCATGAATCAAACTCAACATT
TTAGCTAATTTTTCCCCCTTGGCCGAATTTTCTAAGCCAAGACAAAAGCATCAATATGCTTGCCT
CTAACCGAATACATGCGACACCAATCTCCTTCCTATGGCCGAATATGCATGTCTATGTTGGGGCC
GATTGCAACACTTAATACATTCTACAAGTATGGTCACTTATATTGACTAAACACCC
Found at i:23790953 original size:50 final size:50
Alignment explanation
Indices: 23790843--23791092 Score: 279
Period size: 50 Copynumber: 4.9 Consensus size: 50
23790833 ACATTAAGAG
*
23790843 GATGAGA--TCCCATGTAAGACCATCTCTGGGACATGGCATTGGCATCATTGA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--TGA
**
23790894 GATTATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGTGTTGGCACTGA
1 G---ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGA
* *
23790947 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGA
** * *
23790997 GATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACTTA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGA
* * ** * * * *
23791047 TATGATAACTCCCATGTTAGACCATATCTGGGATATGGAATTGGCA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
23791093 GTCCAAGAAA
Statistics
Matches: 172, Mismatches: 22, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
50 126 0.73
51 1 0.01
53 4 0.02
54 6 0.03
55 1 0.01
56 34 0.20
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.24
Consensus pattern (50 bp):
GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGA
Found at i:23793740 original size:51 final size:51
Alignment explanation
Indices: 23793620--23793815 Score: 173
Period size: 51 Copynumber: 3.9 Consensus size: 51
23793610 AAAGTGATGG
* * * * ** * *
23793620 TCACGTGTGCAGTACTATGTGTAGGCTACTATGTGTATCGGA-A-TGATAGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCAAACAGTAAT-GA
* *
23793670 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAAACAGT-TTCGA
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCAAACAGTAAT-GA
* * * * ** ** *
23793721 TCACGTGTGTAGTACTATGTGCAGACTACTACGTGTATCGGATGGTAATGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCAAACAGTAATGA
*
23793772 TCACATGTGTAGTACTATGTGCAGGCTACTATGTGAACCAAACA
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCAAACA
23793816 TCATTGATTA
Statistics
Matches: 113, Mismatches: 30, Indels: 5
0.76 0.20 0.03
Matches are distributed among these distances:
50 35 0.31
51 76 0.67
52 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30
Consensus pattern (51 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCAAACAGTAATGA
Found at i:23793812 original size:102 final size:101
Alignment explanation
Indices: 23793620--23793815 Score: 304
Period size: 102 Copynumber: 1.9 Consensus size: 101
23793610 AAAGTGATGG
* * *
23793620 TCACGTGTGCAGTACTATGTGTAGGCTACTATGTGTATCGGAATGATAGGTCACATGTGTAGTAC
1 TCACGTGTGCAGTACTATGTGCAGACTACTACGTGTATCGGAATGATAGGTCACATGTGTAGTAC
*
23793685 TATGTGCAGGCTACTATGCGTACCAAACAGTTTCGA
66 TATGTGCAGGCTACTATGCGAACCAAACAGTTTCGA
* *
23793721 TCACGTGTGTAGTACTATGTGCAGACTACTACGTGTATCGG-ATGGTAATGGTCACATGTGTAGT
1 TCACGTGTGCAGTACTATGTGCAGACTACTACGTGTATCGGAATGAT-A-GGTCACATGTGTAGT
*
23793785 ACTATGTGCAGGCTACTATGTGAACCAAACA
64 ACTATGTGCAGGCTACTATGCGAACCAAACA
23793816 TCATTGATTA
Statistics
Matches: 86, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
100 4 0.05
101 38 0.44
102 44 0.51
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30
Consensus pattern (101 bp):
TCACGTGTGCAGTACTATGTGCAGACTACTACGTGTATCGGAATGATAGGTCACATGTGTAGTAC
TATGTGCAGGCTACTATGCGAACCAAACAGTTTCGA
Found at i:23793864 original size:45 final size:45
Alignment explanation
Indices: 23793813--23793901 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
23793803 TGTGAACCAA
* * *
23793813 ACATCATTGATTAGTAAGGTGGTTGCTATGTTCTGATTCCACCGG
1 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCGG
23793858 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCG
1 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCG
23793902 AGTATCTGTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.34
Consensus pattern (45 bp):
ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCGG
Found at i:23799961 original size:16 final size:17
Alignment explanation
Indices: 23799924--23799961 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
23799914 GCAACGAAGG
* *
23799924 AGTAAGTTAAGCAAGCA
1 AGTAAGTAAAGCAAGAA
23799941 AGTAAGTAAAG-AAGAA
1 AGTAAGTAAAGCAAGAA
23799957 AGTAA
1 AGTAA
23799962 AGATCTTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 9 0.47
17 10 0.53
ACGTcount: A:0.55, C:0.05, G:0.24, T:0.16
Consensus pattern (17 bp):
AGTAAGTAAAGCAAGAA
Found at i:23806252 original size:18 final size:18
Alignment explanation
Indices: 23806231--23806269 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
23806221 TTTGGTGATT
23806231 TGTATTAATATGGCAAAC
1 TGTATTAATATGGCAAAC
* *
23806249 TGTATTAATTTGTCAAAC
1 TGTATTAATATGGCAAAC
23806267 TGT
1 TGT
23806270 GTATTGTGAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.41
Consensus pattern (18 bp):
TGTATTAATATGGCAAAC
Found at i:23806984 original size:17 final size:17
Alignment explanation
Indices: 23806901--23806984 Score: 78
Period size: 17 Copynumber: 4.9 Consensus size: 17
23806891 TTATGATGGA
*
23806901 GTATGAACTGTTATTTT
1 GTATGAACTGTTATTTG
* *
23806918 GCATGAACTGTTATGTG
1 GTATGAACTGTTATTTG
* * *
23806935 TTATGAACTGCTAGTTG
1 GTATGAACTGTTATTTG
* **
23806952 GAATGAACTGCCATTTG
1 GTATGAACTGTTATTTG
*
23806969 GTATGTACTGTTATTT
1 GTATGAACTGTTATTT
23806985 CATATAAACG
Statistics
Matches: 51, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
17 51 1.00
ACGTcount: A:0.24, C:0.11, G:0.23, T:0.43
Consensus pattern (17 bp):
GTATGAACTGTTATTTG
Found at i:23807033 original size:30 final size:30
Alignment explanation
Indices: 23806999--23807066 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 30
23806989 TAAACGAATG
23806999 TTTTATGCGAATTGA-TATGTG-ATCTGCTCA
1 TTTTATGCGAATT-ACTATGTGCA-CTGCTCA
* *
23807029 TTTTATGTGAATTACTTATGTGCACTGCTTA
1 TTTTATGCGAATTAC-TATGTGCACTGCTCA
23807060 TTTTATG
1 TTTTATG
23807067 AGAACTATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
29 1 0.03
30 12 0.36
31 19 0.58
32 1 0.03
ACGTcount: A:0.22, C:0.12, G:0.18, T:0.49
Consensus pattern (30 bp):
TTTTATGCGAATTACTATGTGCACTGCTCA
Found at i:23807057 original size:31 final size:30
Alignment explanation
Indices: 23807014--23807079 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 30
23807004 TGCGAATTGA
* *
23807014 TATGTGATCTGCTCATTTTATGTGAATTACT
1 TATGTGATCTGCTCATTTTATGAGAACTA-T
*
23807045 TATGTGCA-CTGCTTATTTTATGAGAACTAT
1 TATGTG-ATCTGCTCATTTTATGAGAACTAT
23807075 TATGT
1 TATGT
23807080 CGTGTGAGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
30 6 0.19
31 24 0.77
32 1 0.03
ACGTcount: A:0.24, C:0.12, G:0.17, T:0.47
Consensus pattern (30 bp):
TATGTGATCTGCTCATTTTATGAGAACTAT
Found at i:23829969 original size:66 final size:66
Alignment explanation
Indices: 23829891--23830684 Score: 1588
Period size: 66 Copynumber: 12.0 Consensus size: 66
23829881 TGAGAAGAGT
23829891 AAGTAGATAAAAAAGAGGTAAAAGTTTAAATTTTTCGTATAAGAGTATTTTAGTCATTTCACGTG
1 AAGTAGATAAAAAAGAGGTAAAAGTTTAAATTTTTCGTATAAGAGTATTTTAGTCATTTCACGTG
23829956 A
66 A
23829957 AAGTAGATAAAAAAGAGGTAAAAGTTTAAATTTTTCGTATAAGAGTATTTTAGTCATTTCACGTG
1 AAGTAGATAAAAAAGAGGTAAAAGTTTAAATTTTTCGTATAAGAGTATTTTAGTCATTTCACGTG
23830022 A
66 A
23830023 AAGTAGATAAAAAAGAGGTAAAAGTTTAAATTTTTCGTATAAGAGTATTTTAGTCATTTCACGTG
1 AAGTAGATAAAAAAGAGGTAAAAGTTTAAATTTTTCGTATAAGAGTATTTTAGTCATTTCACGTG
23830088 A
66 A
23830089 AAGTAGATAAAAAAGAGGTAAAAGTTTAAATTTTTCGTATAAGAGTATTTTAGTCATTTCACGTG
1 AAGTAGATAAAAAAGAGGTAAAAGTTTAAATTTTTCGTATAAGAGTATTTTAGTCATTTCACGTG
23830154 A
66 A
23830155 AAGTAGATAAAAAAGAGGTAAAAGTTTAAATTTTTCGTATAAGAGTATTTTAGTCATTTCACGTG
1 AAGTAGATAAAAAAGAGGTAAAAGTTTAAATTTTTCGTATAAGAGTATTTTAGTCATTTCACGTG
23830220 A
66 A
23830221 AAGTAGATAAAAAAGAGGTAAAAGTTTAAATTTTTCGTATAAGAGTATTTTAGTCATTTCACGTG
1 AAGTAGATAAAAAAGAGGTAAAAGTTTAAATTTTTCGTATAAGAGTATTTTAGTCATTTCACGTG
23830286 A
66 A
23830287 AAGTAGATAAAAAAGAGGTAAAAGTTTAAATTTTTCGTATAAGAGTATTTTAGTCATTTCACGTG
1 AAGTAGATAAAAAAGAGGTAAAAGTTTAAATTTTTCGTATAAGAGTATTTTAGTCATTTCACGTG
23830352 A
66 A
23830353 AAGTAGATAAAAAAGAGGTAAAAGTTTAAATTTTTCGTATAAGAGTATTTTAGTCATTTCACGTG
1 AAGTAGATAAAAAAGAGGTAAAAGTTTAAATTTTTCGTATAAGAGTATTTTAGTCATTTCACGTG
23830418 A
66 A
23830419 AAGTAGATAAAAAAGAGGTAAAAGTTTAAATTTTTCGTATAAGAGTATTTTAGTCATTTCACGTG
1 AAGTAGATAAAAAAGAGGTAAAAGTTTAAATTTTTCGTATAAGAGTATTTTAGTCATTTCACGTG
23830484 A
66 A
23830485 AAGTAGATAAAAAAGAGGTAAAAGTTTAAATTTTTCGTATAAGAGTATTTTAGTCATTTCACGTG
1 AAGTAGATAAAAAAGAGGTAAAAGTTTAAATTTTTCGTATAAGAGTATTTTAGTCATTTCACGTG
23830550 A
66 A
23830551 AAGTAGATAAAAAAGAGGTAAAAGTTTAAATTTTTCGTATAAGAGTATTTTAGTCATTTCACGTG
1 AAGTAGATAAAAAAGAGGTAAAAGTTTAAATTTTTCGTATAAGAGTATTTTAGTCATTTCACGTG
23830616 A
66 A
23830617 AAGTAGATAAAAAAGAGGTAAAAGTTTAAATTTTTCGTATAAGAGTATTTTAGTCATTTCACGTG
1 AAGTAGATAAAAAAGAGGTAAAAGTTTAAATTTTTCGTATAAGAGTATTTTAGTCATTTCACGTG
23830682 A
66 A
23830683 AA
1 AA
23830685 TTTATATTAG
Statistics
Matches: 728, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 728 1.00
ACGTcount: A:0.41, C:0.06, G:0.18, T:0.35
Consensus pattern (66 bp):
AAGTAGATAAAAAAGAGGTAAAAGTTTAAATTTTTCGTATAAGAGTATTTTAGTCATTTCACGTG
A
Found at i:23832796 original size:39 final size:39
Alignment explanation
Indices: 23832734--23833029 Score: 306
Period size: 39 Copynumber: 7.4 Consensus size: 39
23832724 AAAAAATCTT
* * * *
23832734 ATTCAGTATAATCAATGGGTAATGCTCATTTGAGTAAGC
1 ATTCAGTATAATCAGTGGATAATGCTCGTTTGAGCAAGC
* **
23832773 ATT-ATGTATAATCAATGGATAATGCTCACTTGAGCAAGC
1 ATTCA-GTATAATCAGTGGATAATGCTCGTTTGAGCAAGC
23832812 ATTCAGTATAATCAGTGGATAATGCTCGTTTGAGCAAGC
1 ATTCAGTATAATCAGTGGATAATGCTCGTTTGAGCAAGC
* * * *
23832851 AGTCAATATAATCAGTGGATAATGCTTTGTTTGAGAAAACATTCAAAC
1 ATTCAGTATAATCAGTGGATAATGC-TCGTTTGAG--------CAAGC
* * * * *
23832899 ATTTAGTATAATTAGTGAATAATGCTCATTTGAGCAATC
1 ATTCAGTATAATCAGTGGATAATGCTCGTTTGAGCAAGC
*
23832938 ATTCAATATAATCAGTGGATAATGCTCGTTTGAGCAAGC
1 ATTCAGTATAATCAGTGGATAATGCTCGTTTGAGCAAGC
* * *
23832977 ATTCAATATAATTAGTGGATAATGCTCGTTTAAGCAAGC
1 ATTCAGTATAATCAGTGGATAATGCTCGTTTGAGCAAGC
*
23833016 ATTTAGTATAATCA
1 ATTCAGTATAATCA
23833030 ATATTTCATT
Statistics
Matches: 217, Mismatches: 29, Indels: 22
0.81 0.11 0.08
Matches are distributed among these distances:
38 1 0.00
39 176 0.81
40 9 0.04
47 7 0.03
48 24 0.11
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.33
Consensus pattern (39 bp):
ATTCAGTATAATCAGTGGATAATGCTCGTTTGAGCAAGC
Found at i:23832962 original size:87 final size:86
Alignment explanation
Indices: 23832811--23832982 Score: 254
Period size: 87 Copynumber: 2.0 Consensus size: 86
23832801 CTTGAGCAAG
* *
23832811 CATTCAGTATAATCAGTGGATAATGCTCGTTTGAGCAAGCAGTCAATATAATCAGTGGATAATGC
1 CATTCAGTATAATCAGTGAATAATGCTCATTTGAGCAAGCAGTCAATATAATCAGTGGATAATGC
*
23832876 TTTGTTTGAGAAAACATTCAAA
66 -TCGTTTGAGAAAACATTCAAA
* * * *
23832898 CATTTAGTATAATTAGTGAATAATGCTCATTTGAGCAATCATTCAATATAATCAGTGGATAATGC
1 CATTCAGTATAATCAGTGAATAATGCTCATTTGAGCAAGCAGTCAATATAATCAGTGGATAATGC
* *
23832963 TCGTTTGAGCAAGCATTCAA
66 TCGTTTGAGAAAACATTCAA
23832983 TATAATTAGT
Statistics
Matches: 76, Mismatches: 9, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
86 17 0.22
87 59 0.78
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (86 bp):
CATTCAGTATAATCAGTGAATAATGCTCATTTGAGCAAGCAGTCAATATAATCAGTGGATAATGC
TCGTTTGAGAAAACATTCAAA
Found at i:23838389 original size:18 final size:18
Alignment explanation
Indices: 23838349--23838393 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
23838339 CACTCTTATG
*
23838349 TTCTTTCTCAAATTCTGT
1 TTCTTTTTCAAATTCTGT
* * *
23838367 CTCTTTTTCAACTTCTTT
1 TTCTTTTTCAAATTCTGT
23838385 TTCTTTTTC
1 TTCTTTTTC
23838394 TTTTCCTTTT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.11, C:0.24, G:0.02, T:0.62
Consensus pattern (18 bp):
TTCTTTTTCAAATTCTGT
Found at i:23838390 original size:6 final size:6
Alignment explanation
Indices: 23838379--23838426 Score: 60
Period size: 6 Copynumber: 7.5 Consensus size: 6
23838369 CTTTTTCAAC
*
23838379 TTCTTT TTCTTT TTCTTT TCCTTTT TCCTCTTT TTCTTT TTCTTT TTC
1 TTCTTT TTCTTT TTCTTT TTC-TTT T--TCTTT TTCTTT TTCTTT TTC
23838427 ATTACAACAT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
6 28 0.76
7 4 0.11
8 4 0.11
9 1 0.03
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (6 bp):
TTCTTT
Found at i:23838412 original size:21 final size:21
Alignment explanation
Indices: 23838386--23838426 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
23838376 AACTTCTTTT
23838386 TCTTTTTCTTTTCCTTTTTCC
1 TCTTTTTCTTTTCCTTTTTCC
*
23838407 TCTTTTTCTTTTTCTTTTTC
1 TCTTTTTCTTTTCCTTTTTC
23838427 ATTACAACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (21 bp):
TCTTTTTCTTTTCCTTTTTCC
Found at i:23839416 original size:13 final size:12
Alignment explanation
Indices: 23839364--23839423 Score: 61
Period size: 11 Copynumber: 4.9 Consensus size: 12
23839354 AAAATATATC
23839364 TTTTTTTT-AAT
1 TTTTTTTTGAAT
*
23839375 TTTTTTTTCAAAT
1 TTTTTTTT-GAAT
23839388 TTTTTGTTTGAA-
1 TTTTT-TTTGAAT
*
23839400 TTTTGTTTGAAT
1 TTTTTTTTGAAT
23839412 TTTTTTTCTGAA
1 TTTTTTT-TGAA
23839424 CCTACTCCGG
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
11 14 0.34
12 10 0.24
13 14 0.34
14 3 0.07
ACGTcount: A:0.18, C:0.03, G:0.08, T:0.70
Consensus pattern (12 bp):
TTTTTTTTGAAT
Found at i:23840475 original size:104 final size:103
Alignment explanation
Indices: 23840339--23840549 Score: 404
Period size: 104 Copynumber: 2.0 Consensus size: 103
23840329 AAGAGTCTCT
23840339 TTTAGTCCATTAAACAGCCTCCTTAATGTTCTTTTAAAAGCTTTGAAACTGTCCTACTTTGAAGA
1 TTTAGTCCATTAAACAGCCTCCTTAATGTTCTTTTAAAAGCTTTGAAACTGTCCTACTTTGAAGA
23840404 GTCTTTAATCATATGAAAAGTCACATGCAAAATAGATA
66 GTCTTTAATCATATGAAAAGTCACATGCAAAATAGATA
23840442 TTTAGGTCCATTAAACAGCCTCCTTAATGTTCTTTTAAAAGCTTTGAAACTGTCCTACTTTGAAG
1 TTTA-GTCCATTAAACAGCCTCCTTAATGTTCTTTTAAAAGCTTTGAAACTGTCCTACTTTGAAG
*
23840507 AGTCTTTAATCATATGAAAAGTCACCTGCAAAATAGATA
65 AGTCTTTAATCATATGAAAAGTCACATGCAAAATAGATA
23840546 TTTA
1 TTTA
23840550 AGATTAAATA
Statistics
Matches: 106, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
103 4 0.04
104 102 0.96
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.36
Consensus pattern (103 bp):
TTTAGTCCATTAAACAGCCTCCTTAATGTTCTTTTAAAAGCTTTGAAACTGTCCTACTTTGAAGA
GTCTTTAATCATATGAAAAGTCACATGCAAAATAGATA
Found at i:23841822 original size:46 final size:46
Alignment explanation
Indices: 23841766--23841859 Score: 152
Period size: 46 Copynumber: 2.0 Consensus size: 46
23841756 CAAAGAAAAG
23841766 ACCTCAACCCACTATCAAGAATGATAAGAACCTTAGTATATGATGA
1 ACCTCAACCCACTATCAAGAATGATAAGAACCTTAGTATATGATGA
* * * *
23841812 ACCTCGACCCACTATCAAGGATGATAGGAACCTTGGTATATGATGA
1 ACCTCAACCCACTATCAAGAATGATAAGAACCTTAGTATATGATGA
23841858 AC
1 AC
23841860 GCCACACTAT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.37, C:0.22, G:0.17, T:0.23
Consensus pattern (46 bp):
ACCTCAACCCACTATCAAGAATGATAAGAACCTTAGTATATGATGA
Found at i:23842182 original size:23 final size:23
Alignment explanation
Indices: 23842155--23842201 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
23842145 TCAATTCAGG
23842155 TTATTTGAATGTCTTGAATTGCT
1 TTATTTGAATGTCTTGAATTGCT
*
23842178 TTATTTGAATGTCTTTAATTGCT
1 TTATTTGAATGTCTTGAATTGCT
23842201 T
1 T
23842202 GAAAATGACA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.21, C:0.09, G:0.15, T:0.55
Consensus pattern (23 bp):
TTATTTGAATGTCTTGAATTGCT
Found at i:23842463 original size:23 final size:23
Alignment explanation
Indices: 23842433--23842476 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
23842423 TATAACAGCT
23842433 TTGAGTTCTTGAGTTACGAGCCC
1 TTGAGTTCTTGAGTTACGAGCCC
*
23842456 TTGAGTTCTTGAGTTATGAGC
1 TTGAGTTCTTGAGTTACGAGC
23842477 TGAAAAGTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.18, C:0.16, G:0.27, T:0.39
Consensus pattern (23 bp):
TTGAGTTCTTGAGTTACGAGCCC
Found at i:23845092 original size:61 final size:62
Alignment explanation
Indices: 23844994--23845123 Score: 212
Period size: 61 Copynumber: 2.1 Consensus size: 62
23844984 AGTATGTTCA
23844994 AAACTAACTTTTTTTTCAAGAATTTTTTTACAACTTGATATCCACTCTTGAA-TTTGAATGG
1 AAACTAACTTTTTTTTCAAGAATTTTTTTACAACTTGATATCCACTCTTGAATTTTGAATGG
*
23845055 -AACTAA-TTTTTTTTCACGAAATTTTTTTTACAACTTGATATCCACTCTTGAATTTTGAATGG
1 AAACTAACTTTTTTTTCAAG-AA-TTTTTTTACAACTTGATATCCACTCTTGAATTTTGAATGG
23845117 AAACTAA
1 AAACTAA
23845124 ATTCGTTTTT
Statistics
Matches: 64, Mismatches: 1, Indels: 6
0.90 0.01 0.08
Matches are distributed among these distances:
59 11 0.17
60 8 0.12
61 30 0.47
62 9 0.14
63 6 0.09
ACGTcount: A:0.32, C:0.15, G:0.09, T:0.44
Consensus pattern (62 bp):
AAACTAACTTTTTTTTCAAGAATTTTTTTACAACTTGATATCCACTCTTGAATTTTGAATGG
Found at i:23845141 original size:62 final size:59
Alignment explanation
Indices: 23844995--23845144 Score: 189
Period size: 61 Copynumber: 2.4 Consensus size: 59
23844985 GTATGTTCAA
*
23844995 AACTAACTTTTTTTTCA-AGAATTTTTTTACAACTTGATATCCACTCTTGAATTTGAATGG
1 AACTAA-TTTTTTTTCACA-ATTTTTTTTACAACTTGATATCCACTCTTGAATTTGAATGG
23845055 AACTAATTTTTTTTCACGAAATTTTTTTTACAACTTGATATCCACTCTTGAATTTTGAATGG
1 AACTAATTTTTTTTCAC--AATTTTTTTTACAACTTGATATCCACTCTTGAA-TTTGAATGG
23845117 AAACTAAATTCGTTTTTT-AC-ATTTTTTT
1 -AACT-AATT--TTTTTTCACAATTTTTTT
23845145 GTTTTTTCGA
Statistics
Matches: 81, Mismatches: 1, Indels: 14
0.84 0.01 0.15
Matches are distributed among these distances:
59 10 0.12
60 6 0.07
61 31 0.38
62 18 0.22
63 4 0.05
64 4 0.05
65 2 0.02
66 6 0.07
ACGTcount: A:0.29, C:0.14, G:0.09, T:0.48
Consensus pattern (59 bp):
AACTAATTTTTTTTCACAATTTTTTTTACAACTTGATATCCACTCTTGAATTTGAATGG
Found at i:23845520 original size:46 final size:46
Alignment explanation
Indices: 23845468--23845561 Score: 188
Period size: 46 Copynumber: 2.0 Consensus size: 46
23845458 CAAAGAAAAG
23845468 ACCTCGACCCACTATCAAGAATGATAGGAACCTTGGTATATGATGA
1 ACCTCGACCCACTATCAAGAATGATAGGAACCTTGGTATATGATGA
23845514 ACCTCGACCCACTATCAAGAATGATAGGAACCTTGGTATATGATGA
1 ACCTCGACCCACTATCAAGAATGATAGGAACCTTGGTATATGATGA
23845560 AC
1 AC
23845562 GCCACACTAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.23
Consensus pattern (46 bp):
ACCTCGACCCACTATCAAGAATGATAGGAACCTTGGTATATGATGA
Found at i:23845886 original size:23 final size:23
Alignment explanation
Indices: 23845859--23845905 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
23845849 AATTTAGGTT
23845859 ATTTGAATGTCTTGAATTGCTTG
1 ATTTGAATGTCTTGAATTGCTTG
*
23845882 ATTTGAATGTCTTTAATTGCTTG
1 ATTTGAATGTCTTGAATTGCTTG
23845905 A
1 A
23845906 AAATGACACC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.23, C:0.09, G:0.19, T:0.49
Consensus pattern (23 bp):
ATTTGAATGTCTTGAATTGCTTG
Found at i:23847718 original size:17 final size:17
Alignment explanation
Indices: 23847692--23847726 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
23847682 TATTAAAATG
23847692 AGATTAAATATTTAATA
1 AGATTAAATATTTAATA
* *
23847709 AGATTTAATATTTGATA
1 AGATTAAATATTTAATA
23847726 A
1 A
23847727 AAAAATTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (17 bp):
AGATTAAATATTTAATA
Found at i:23848062 original size:42 final size:42
Alignment explanation
Indices: 23847948--23848048 Score: 134
Period size: 42 Copynumber: 2.4 Consensus size: 42
23847938 TGATATATTT
* * * *
23847948 TTAATCATGCC-ACTATTATTAATTGATATTTGATTTACATG
1 TTAAGCATGCCGACTATGATAAATTGAGATTTGATTTACATG
*
23847989 TTAAGCATGTCGACTATGATAAATTGAGATTTGA-TTAGCATG
1 TTAAGCATGCCGACTATGATAAATTGAGATTTGATTTA-CATG
23848031 TTAAGCATGCCGACTATG
1 TTAAGCATGCCGACTATG
23848049 TTGATCTTAG
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
41 12 0.23
42 40 0.77
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.39
Consensus pattern (42 bp):
TTAAGCATGCCGACTATGATAAATTGAGATTTGATTTACATG
Found at i:23848264 original size:24 final size:24
Alignment explanation
Indices: 23848172--23848264 Score: 73
Period size: 24 Copynumber: 3.9 Consensus size: 24
23848162 TTTACAGCAA
* **
23848172 AATTGAGTGGCTTGTCCATAATGC
1 AATTGAGTGGCTTGTCCACAACAC
* *
23848196 TATTAAGTGGCTT-TGCCACAACA-
1 AATTGAGTGGCTTGT-CCACAACAC
** * *
23848219 ATAACGAGTGGCTTCTCTACAACAC
1 A-ATTGAGTGGCTTGTCCACAACAC
23848244 AATTGAGTGGCTTGTCCACAA
1 AATTGAGTGGCTTGTCCACAA
23848265 TGCTATTAAG
Statistics
Matches: 51, Mismatches: 14, Indels: 8
0.70 0.19 0.11
Matches are distributed among these distances:
23 1 0.02
24 48 0.94
25 2 0.04
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (24 bp):
AATTGAGTGGCTTGTCCACAACAC
Found at i:23849489 original size:15 final size:15
Alignment explanation
Indices: 23849471--23849500 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
23849461 AAAAATTTAT
23849471 ATTATAAAACTATAG
1 ATTATAAAACTATAG
*
23849486 ATTATAAAGCTATAG
1 ATTATAAAACTATAG
23849501 TGAAACTGTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.10, T:0.33
Consensus pattern (15 bp):
ATTATAAAACTATAG
Found at i:23862131 original size:47 final size:47
Alignment explanation
Indices: 23862053--23862815 Score: 1210
Period size: 47 Copynumber: 16.2 Consensus size: 47
23862043 CCCTTCGGGA
** * * * * *
23862053 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACAGATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * * *
23862100 CCTGTCACATATATACACTTTCACATTCATCACACCGGCCATTAAGC
1 CTTATCACAGATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23862147 CTTATCAC-GCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACAG-ATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
23862194 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACAGATATACACTTTCACATTCATCACATCGGCCATTAGGC
23862241 CTTATCACAGATATACACTTTCACATTCATCACATCGTG---TTAGGC
1 CTTATCACAGATATACACTTTCACATTCATCACATCG-GCCATTAGGC
* * *
23862286 CTTATCGCACATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACAGATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23862333 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--AGATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23862382 CTTATCACAGATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACAGATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
23862429 CTTATCATATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACAGATATACACTTTCACATTCATCACATCGGCCATTAGGC
23862476 CTTATCACAGATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACAGATATACACTTTCACATTCATCACATCGGCCATTAGGC
23862523 CTTATCACAGATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACAGATATACACTTTCACATTCATCACATCGGCCATTAGGC
23862570 CTTATCACAGATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACAGATATACACTTTCACATTCATCACATCGGCCATTAGGC
23862617 CTTATCACAGATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACAGATATACACTTTCACATTCATCACATCGGCCATTAGGC
23862664 CTTATCACAGATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACAGATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23862711 CTTATCACAGATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACAGATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
23862758 CTTATCATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATC--ACAGATATACACTTTCACATTCATCACATCGGCCATTAGGC
23862807 CTTATCACA
1 CTTATCACA
23862816 ATTTAGAATT
Statistics
Matches: 667, Mismatches: 39, Indels: 20
0.92 0.05 0.03
Matches are distributed among these distances:
44 1 0.00
45 41 0.06
47 535 0.80
48 1 0.00
49 89 0.13
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (47 bp):
CTTATCACAGATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:23884588 original size:29 final size:28
Alignment explanation
Indices: 23884552--23884629 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
23884542 TCATGAGATT
23884552 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
23884582 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
23884609 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
23884630 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:23884872 original size:174 final size:174
Alignment explanation
Indices: 23884582--23884908 Score: 600
Period size: 174 Copynumber: 1.9 Consensus size: 174
23884572 AAATTGTACA
*
23884582 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
23884647 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
23884712 TTTTGGACAGCGGAAAAGGTAAGGGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGGGTGCGAACTTGAAATGCATG
* *
23884756 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
23884821 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
23884886 TTTTGGACAGCGGAAAAGGTAAG
131 TTTTGGACAGCGGAAAAGGTAAG
23884909 TACCTTGAGT
Statistics
Matches: 147, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 147 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGGGTGCGAACTTGAAATGCATG
Found at i:23898104 original size:25 final size:25
Alignment explanation
Indices: 23898074--23898130 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 25
23898064 TAGTTTCTCA
* *
23898074 AAAATTTAATAGGGGCAAAATTGTC
1 AAAATTTAACAGGGGCAAAATAGTC
* *
23898099 AAAATTTACCAGGGGTAAAATAGTC
1 AAAATTTAACAGGGGCAAAATAGTC
23898124 AAAATTT
1 AAAATTT
23898131 TGTTGGGGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.46, C:0.09, G:0.18, T:0.28
Consensus pattern (25 bp):
AAAATTTAACAGGGGCAAAATAGTC
Found at i:23900221 original size:37 final size:33
Alignment explanation
Indices: 23900143--23900222 Score: 81
Period size: 36 Copynumber: 2.3 Consensus size: 33
23900133 TTAATTTTTA
*
23900143 TATTT-TTTTAATATTTTAATAATCAAAATATT
1 TATTTATTTTAATATTTTAAAAATCAAAATATT
* *
23900175 TAATATATTTTAATCATGTTTAAAAATTAAAATACTAT
1 T-ATTTATTTTAAT-AT-TTTAAAAATCAAAATA-T-T
23900213 TATTTATTTT
1 TATTTATTTT
23900223 TATTAATAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
32 1 0.03
33 3 0.08
34 7 0.18
35 2 0.05
36 14 0.37
37 9 0.24
38 2 0.05
ACGTcount: A:0.41, C:0.04, G:0.01, T:0.54
Consensus pattern (33 bp):
TATTTATTTTAATATTTTAAAAATCAAAATATT
Found at i:23900555 original size:200 final size:200
Alignment explanation
Indices: 23900212--23900613 Score: 795
Period size: 200 Copynumber: 2.0 Consensus size: 200
23900202 TAAAATACTA
23900212 TTATTTATTTTTATTAATAACTTAAAAAATAAACACATAAAATTACATTTAATGAGTGTGATACT
1 TTATTTATTTTTATTAATAACTTAAAAAATAAACACATAAAATTACATTTAATGAGTGTGATACT
23900277 AAAAACTTATTTATTAAAAAAGTATATTAAGAAATAAAATAATAAAAGCAATATTGTTGTTTCAA
66 AAAAACTTATTTATTAAAAAAGTATATTAAGAAATAAAATAATAAAAGCAATATTGTTGTTTCAA
23900342 AAAATTCAACCGTGATGAGTATATATATATTGCAAATGCTATACTATTCAAAGCCTTGGTTCACA
131 AAAATTCAACCGTGATGAGTATATATATATTGCAAATGCTATACTATTCAAAGCCTTGGTTCACA
23900407 ATTGC
196 ATTGC
23900412 TTATTTATTTTTATTAATAACTTAAAAAATAAACACATAAAATTACATTTAATGAGTGTGATACT
1 TTATTTATTTTTATTAATAACTTAAAAAATAAACACATAAAATTACATTTAATGAGTGTGATACT
23900477 AAAAACTTATTTATTAAAAAAGTATATTAAGAAATAAAATAATAAAAGCAATATTGTTGTTTCAA
66 AAAAACTTATTTATTAAAAAAGTATATTAAGAAATAAAATAATAAAAGCAATATTGTTGTTTCAA
*
23900542 AAAATTCAACCGTGATGAGTATATATATATTGCAAATGCTATACTATTCAAAGCCTTGTTTCACA
131 AAAATTCAACCGTGATGAGTATATATATATTGCAAATGCTATACTATTCAAAGCCTTGGTTCACA
23900607 ATTGC
196 ATTGC
23900612 TT
1 TT
23900614 TCTCTCTCAC
Statistics
Matches: 201, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
200 201 1.00
ACGTcount: A:0.44, C:0.10, G:0.09, T:0.37
Consensus pattern (200 bp):
TTATTTATTTTTATTAATAACTTAAAAAATAAACACATAAAATTACATTTAATGAGTGTGATACT
AAAAACTTATTTATTAAAAAAGTATATTAAGAAATAAAATAATAAAAGCAATATTGTTGTTTCAA
AAAATTCAACCGTGATGAGTATATATATATTGCAAATGCTATACTATTCAAAGCCTTGGTTCACA
ATTGC
Found at i:23907754 original size:64 final size:64
Alignment explanation
Indices: 23907682--23907804 Score: 246
Period size: 64 Copynumber: 1.9 Consensus size: 64
23907672 CTATTTAATC
23907682 CTTTGTTGTTATTTGTTTTTTTATTAATTAGTTTATTAATTAATTCACTGTGATTATTATCATG
1 CTTTGTTGTTATTTGTTTTTTTATTAATTAGTTTATTAATTAATTCACTGTGATTATTATCATG
23907746 CTTTGTTGTTATTTGTTTTTTTATTAATTAGTTTATTAATTAATTCACTGTGATTATTA
1 CTTTGTTGTTATTTGTTTTTTTATTAATTAGTTTATTAATTAATTCACTGTGATTATTA
23907805 ATATTATCAT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 59 1.00
ACGTcount: A:0.24, C:0.06, G:0.11, T:0.60
Consensus pattern (64 bp):
CTTTGTTGTTATTTGTTTTTTTATTAATTAGTTTATTAATTAATTCACTGTGATTATTATCATG
Found at i:23907921 original size:23 final size:23
Alignment explanation
Indices: 23907881--23907926 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
23907871 ACCCACCTAT
23907881 TTTTATTTATGTACATTATTTTA
1 TTTTATTTATGTACATTATTTTA
23907904 TTTTA-TTATGTACTATTATTTTA
1 TTTTATTTATGTAC-ATTATTTTA
23907927 ATTCTTTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 8 0.36
23 14 0.64
ACGTcount: A:0.26, C:0.04, G:0.04, T:0.65
Consensus pattern (23 bp):
TTTTATTTATGTACATTATTTTA
Found at i:23913750 original size:47 final size:47
Alignment explanation
Indices: 23913692--23914986 Score: 2212
Period size: 47 Copynumber: 27.5 Consensus size: 47
23913682 ATTCAGCCAA
* *
23913692 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
*
23913739 GAAAGTGTATATGTGTGATAAGGCCTAATAGCTGATGTGATGAATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* * *
23913786 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGACGAATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* *
23913833 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTG--TATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
23913882 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
23913929 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
23913976 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
23914023 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
23914070 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
23914117 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
23914164 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
23914211 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
23914258 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
23914305 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
23914352 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
23914399 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
23914446 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
23914493 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
*
23914540 GAAAGTGTATATGTGTGATAAGGCCTAATAGCTGATGTGATGAATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* * *
23914587 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGACGAATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* *
23914634 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTG--TATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
23914683 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* * * *
23914730 GAAAGTGTATATATGTAATAAGGCCTAATGGCCGGTGTGATGAATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* *
23914777 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* * * *
23914824 GAAAGTGTATATATGTAATAAGGCCTAATGGCCGGTGTGATGAATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* *
23914871 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* * * * * * * * *
23914918 GAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* **
23914965 GAAAGTGCATAAATGTGATAAG
1 GAAAGTGTATATGTGTGATAAG
23914987 TCCCGAAAGG
Statistics
Matches: 1205, Mismatches: 39, Indels: 8
0.96 0.03 0.01
Matches are distributed among these distances:
47 1113 0.92
49 92 0.08
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
Found at i:23915161 original size:37 final size:37
Alignment explanation
Indices: 23915105--23915183 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
23915095 CCGAGCTCTA
* *
23915105 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
23915142 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
23915179 AAGAC
1 AAGAC
23915184 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:23925799 original size:44 final size:44
Alignment explanation
Indices: 23925731--23925996 Score: 361
Period size: 44 Copynumber: 6.0 Consensus size: 44
23925721 GGTGAAACTA
* *
23925731 TAAGTCCTATCTCCCTGAACAGCAGTGGAATAGGTAGAAGATTG
1 TAAGTCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTG
* * *
23925775 TAAGTCCTAGCTCCCTGAATAGCAGTGTAATAGGAGGAAGATTG
1 TAAGTCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTG
* * * * *
23925819 CATGTCCTAGCTCCCTGAACAACATTGGAATAGGTGGAAAATTG
1 TAAGTCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTG
* * *
23925863 TATGTCCTATCTCCCTGAACAACAGTGGAATAGGTGGAAGATTG
1 TAAGTCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTG
*
23925907 TAAGTCCTAACTCCCTGAACAGCAGTGGAATAGGTGGAAGATTG
1 TAAGTCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTG
* * * * *
23925951 CATGTCCTAGCTCCATAAACAGCAGTGGAATAGGTGTAAGATTG
1 TAAGTCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTG
23925995 TA
1 TA
23925997 GATCCTGTCT
Statistics
Matches: 195, Mismatches: 27, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 195 1.00
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (44 bp):
TAAGTCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTG
Found at i:23926022 original size:132 final size:132
Alignment explanation
Indices: 23925734--23926023 Score: 422
Period size: 132 Copynumber: 2.2 Consensus size: 132
23925724 GAAACTATAA
* *
23925734 GTCCTATCTCCCTGAACAGCAGTGGAATAGGTAGAAGATTGTAAGTCCTAGCTCCCTGAATAGCA
1 GTCCTATCTCCCTGAACAGCAGTGGAATAGGTAGAAGATTGTAAGTCCTAACTCCCTGAACAGCA
* * * *
23925799 GTGTAATAGGAGGAAGATTGCATGTCCTAGCTCCCTGAACAACATTGGAATAGGTGGAAAATTGT
66 GTGGAATAGGAGGAAGATTGCATGTCCTAGCTCCATAAACAACAGTGGAATAGGTGGAAAATTGT
23925864 AT
131 AT
* *
23925866 GTCCTATCTCCCTGAACAACAGTGGAATAGGTGGAAGATTGTAAGTCCTAACTCCCTGAACAGCA
1 GTCCTATCTCCCTGAACAGCAGTGGAATAGGTAGAAGATTGTAAGTCCTAACTCCCTGAACAGCA
* * * *
23925931 GTGGAATAGGTGGAAGATTGCATGTCCTAGCTCCATAAACAGCAGTGGAATAGGTGTAAGATTGT
66 GTGGAATAGGAGGAAGATTGCATGTCCTAGCTCCATAAACAACAGTGGAATAGGTGGAAAATTGT
23925996 A-
131 AT
* *
23925997 GATCCTGTCTCCCT-AAGCAGTAGTGGA
1 G-TCCTATCTCCCTGAA-CAGCAGTGGA
23926024 GCAGATCGAA
Statistics
Matches: 141, Mismatches: 15, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
131 3 0.02
132 138 0.98
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (132 bp):
GTCCTATCTCCCTGAACAGCAGTGGAATAGGTAGAAGATTGTAAGTCCTAACTCCCTGAACAGCA
GTGGAATAGGAGGAAGATTGCATGTCCTAGCTCCATAAACAACAGTGGAATAGGTGGAAAATTGT
AT
Found at i:23926035 original size:88 final size:88
Alignment explanation
Indices: 23925731--23926036 Score: 274
Period size: 88 Copynumber: 3.5 Consensus size: 88
23925721 GGTGAAACTA
* * * * * * * * *
23925731 TAAGTCCTATCTCCCTGAACAGCAGTGGAATAGGTAGAAGATTGTAAGTCCTAGCTCCCTGAATA
1 TAAGTCCTAACTCCCTGAACAGCAGTGGAACAGATCGAAGATTGCATGTCCTAGCTCCATAAACA
* * *
23925796 GCAGTGTAATAGGAGGAAGATTG
66 ACAGTGGAATAGGTGGAAGATTG
* * * * * * * * * * * * *
23925819 CATGTCCTAGCTCCCTGAACAACATTGGAATAGGTGGAAAATTGTATGTCCTATCTCCCTGAACA
1 TAAGTCCTAACTCCCTGAACAGCAGTGGAACAGATCGAAGATTGCATGTCCTAGCTCCATAAACA
23925884 ACAGTGGAATAGGTGGAAGATTG
66 ACAGTGGAATAGGTGGAAGATTG
* * *
23925907 TAAGTCCTAACTCCCTGAACAGCAGTGGAATAGGTGGAAGATTGCATGTCCTAGCTCCATAAACA
1 TAAGTCCTAACTCCCTGAACAGCAGTGGAACAGATCGAAGATTGCATGTCCTAGCTCCATAAACA
* *
23925972 GCAGTGGAATAGGTGTAAGATTG
66 ACAGTGGAATAGGTGGAAGATTG
** * *
23925995 T-AGATCCTGTCTCCCT-AAGCAGTAGTGGAGCAGATCGAAGAT
1 TAAG-TCCTAACTCCCTGAA-CAGCAGTGGAACAGATCGAAGAT
23926037 ACCAGCCTTG
Statistics
Matches: 184, Mismatches: 32, Indels: 4
0.84 0.15 0.02
Matches are distributed among these distances:
87 4 0.02
88 180 0.98
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (88 bp):
TAAGTCCTAACTCCCTGAACAGCAGTGGAACAGATCGAAGATTGCATGTCCTAGCTCCATAAACA
ACAGTGGAATAGGTGGAAGATTG
Found at i:23927741 original size:23 final size:23
Alignment explanation
Indices: 23927701--23927746 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
23927691 ACCCACCTAT
23927701 TTTTATTTATGTACATTATTTTA
1 TTTTATTTATGTACATTATTTTA
23927724 TTTTA-TTATGTACTATTATTTTA
1 TTTTATTTATGTAC-ATTATTTTA
23927747 ATTCTTTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 8 0.36
23 14 0.64
ACGTcount: A:0.26, C:0.04, G:0.04, T:0.65
Consensus pattern (23 bp):
TTTTATTTATGTACATTATTTTA
Found at i:23931522 original size:43 final size:43
Alignment explanation
Indices: 23931460--23931574 Score: 194
Period size: 43 Copynumber: 2.7 Consensus size: 43
23931450 ATAATACACG
*
23931460 ATGCCAATGTCCCAGACATGGTCTTGCACGTTTCCTCACTTCA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTTTCCTCACTTCA
* *
23931503 ATGCCAATGTCCCAAACATGGTCTTACACGTTTCCTCACTTCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTTTCCTCACTTCA
*
23931546 ATGCCAATGTCCCAGACATTGTCTTACAC
1 ATGCCAATGTCCCAGACATGGTCTTACAC
23931575 CTCAGAAGCC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 67 1.00
ACGTcount: A:0.23, C:0.32, G:0.15, T:0.30
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTTTCCTCACTTCA
Found at i:23931759 original size:32 final size:32
Alignment explanation
Indices: 23931710--23932026 Score: 375
Period size: 32 Copynumber: 9.9 Consensus size: 32
23931700 CAATATATAA
* ** *
23931710 ATACATATACAAATCAATTCGAAAATAGT-TGT
1 ATACATATACAATTCAATTCGGCAATA-TAAGT
* *
23931742 ATACCTATATAATTCAATTCGGCAATATAAGT
1 ATACATATACAATTCAATTCGGCAATATAAGT
***
23931774 ATACATATACAATTCAATTCGGCAATAGGTGT
1 ATACATATACAATTCAATTCGGCAATATAAGT
* *
23931806 ATACCTATACAATTCAATTCGACAATATAAGT
1 ATACATATACAATTCAATTCGGCAATATAAGT
* ***
23931838 ATACATATACAATTCAATTCCGCAATAGGTGT
1 ATACATATACAATTCAATTCGGCAATATAAGT
* *
23931870 ATACCTATACAATTCAATTTGGCAATATAAGT
1 ATACATATACAATTCAATTCGGCAATATAAGT
* *
23931902 ATACATACACAATTCAATTCGCCAATATAAGT
1 ATACATATACAATTCAATTCGGCAATATAAGT
* ***
23931934 ATACATATGCAATTCAATTCGGCAATAGGTGT
1 ATACATATACAATTCAATTCGGCAATATAAGT
* * *
23931966 ATACCTATACAATTTAATTCGACAATATAAGT
1 ATACATATACAATTCAATTCGGCAATATAAGT
*
23931998 ATACATATACAATTCAATTCAGCAATATA
1 ATACATATACAATTCAATTCGGCAATATA
23932027 TCAAACATAT
Statistics
Matches: 235, Mismatches: 49, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
31 1 0.00
32 234 1.00
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.32
Consensus pattern (32 bp):
ATACATATACAATTCAATTCGGCAATATAAGT
Found at i:23931863 original size:96 final size:96
Alignment explanation
Indices: 23931710--23932026 Score: 422
Period size: 96 Copynumber: 3.3 Consensus size: 96
23931700 CAATATATAA
* * * * * ***
23931710 ATACATATACAAATCAATTCGAAAATAGT-TGTATACCTATATAATTCAATTCGGCAATATAAGT
1 ATACATATACAATTCAATTCGACAATA-TAAGTATACATATACAATTCAATTCGGCAATAGGTGT
* ***
23931774 ATACATATACAATTCAATTCGGCAATAGGTGT
65 ATACCTATACAATTCAATTCGGCAATATAAGT
* *
23931806 ATACCTATACAATTCAATTCGACAATATAAGTATACATATACAATTCAATTCCGCAATAGGTGTA
1 ATACATATACAATTCAATTCGACAATATAAGTATACATATACAATTCAATTCGGCAATAGGTGTA
*
23931871 TACCTATACAATTCAATTTGGCAATATAAGT
66 TACCTATACAATTCAATTCGGCAATATAAGT
* * *
23931902 ATACATACACAATTCAATTCGCCAATATAAGTATACATATGCAATTCAATTCGGCAATAGGTGTA
1 ATACATATACAATTCAATTCGACAATATAAGTATACATATACAATTCAATTCGGCAATAGGTGTA
* *
23931967 TACCTATACAATTTAATTCGACAATATAAGT
66 TACCTATACAATTCAATTCGGCAATATAAGT
23931998 ATACATATACAATTCAATTC-AGCAATATA
1 ATACATATACAATTCAATTCGA-CAATATA
23932027 TCAAACATAT
Statistics
Matches: 194, Mismatches: 25, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
95 1 0.01
96 193 0.99
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.32
Consensus pattern (96 bp):
ATACATATACAATTCAATTCGACAATATAAGTATACATATACAATTCAATTCGGCAATAGGTGTA
TACCTATACAATTCAATTCGGCAATATAAGT
Found at i:23934609 original size:11 final size:10
Alignment explanation
Indices: 23934580--23934617 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
23934570 TTCCAGCTTG
23934580 TTGAGCTCAA
1 TTGAGCTCAA
*
23934590 TTGAGCTCAT
1 TTGAGCTCAA
23934600 TTGCAGCTCAA
1 TTG-AGCTCAA
23934611 -TGAGCTC
1 TTGAGCTC
23934618 GTTTCCATCT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
9 5 0.20
10 14 0.56
11 6 0.24
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.32
Consensus pattern (10 bp):
TTGAGCTCAA
Found at i:23937920 original size:101 final size:100
Alignment explanation
Indices: 23937805--23938023 Score: 255
Period size: 101 Copynumber: 2.2 Consensus size: 100
23937795 GCACGGAATG
* *
23937805 TGTGTAGGCCACTATGTAAAAGTGAAAGTGAT-GGTCACGTGTGTAGTACTATGTGCAGGCCACT
1 TGTGTAGGCTACTATGT-AAAG-GAAAGT-ATCGATCACGTGTGTAGTACTATGTGCAGGCCACT
*
23937869 ACATGTACCGGAATGAT-A-GGTCGCATGTGTAGTACTA
63 ACATGTACCGG-ATGATAATGGTCACATGTGTAGTACTA
* * * *
23937906 TGTGTAGGCTACTATGCGTACAGGATAGTTTCGATCACGTGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGGCTACTAT--GTAAAGGAAAGTATCGATCACGTGTGTAGTACTATGTGCAGGCCACTA
** * *
23937971 TGTGTATCGGATGGTAATGGTCACATGTGTAGTACTA
64 CATGTACCGGATGATAATGGTCACATGTGTAGTACTA
*
23938008 TGTGCAGGCTACTATG
1 TGTGTAGGCTACTATG
23938024 CGAACCGAAC
Statistics
Matches: 101, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
100 6 0.06
101 58 0.57
102 35 0.35
103 2 0.02
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.31
Consensus pattern (100 bp):
TGTGTAGGCTACTATGTAAAGGAAAGTATCGATCACGTGTGTAGTACTATGTGCAGGCCACTACA
TGTACCGGATGATAATGGTCACATGTGTAGTACTA
Found at i:23937959 original size:51 final size:51
Alignment explanation
Indices: 23937839--23938025 Score: 184
Period size: 51 Copynumber: 3.7 Consensus size: 51
23937829 AAAGTGATGG
* * *** * * *
23937839 TCACGTGTGTAGTACTATGTGCAGGCCACTACATGTACCGGA-A-TGATAGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTATCGGATAGTAAT-GA
* * *
23937889 TCGCATGTGTAGTACTATGTGTAGGCTACTATGCGTA-CAGGATAGT-TTCGA
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTATC-GGATAGTAAT-GA
* * * *
23937940 TCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTATCGGATGGTAATGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTATCGGATAGTAATGA
23937991 TCACATGTGTAGTACTATGTGCAGGCTACTATGCG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCG
23938026 AACCGAACAT
Statistics
Matches: 113, Mismatches: 19, Indels: 9
0.80 0.13 0.06
Matches are distributed among these distances:
49 1 0.01
50 33 0.29
51 76 0.67
52 3 0.03
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (51 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTATCGGATAGTAATGA
Found at i:23937974 original size:26 final size:26
Alignment explanation
Indices: 23937945--23938023 Score: 69
Period size: 26 Copynumber: 3.1 Consensus size: 26
23937935 TTCGATCACG
23937945 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
* *
23937971 TGTGTA-T-CGGATG-GTAATGG-TCAC-A
1 TGTGTAGTAC-TATGTG-CA-GGCT-ACTA
23937996 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
23938022 TG
1 TG
23938024 CGAACCGAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
24 2 0.05
25 17 0.43
26 19 0.47
27 2 0.05
ACGTcount: A:0.23, C:0.14, G:0.29, T:0.34
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCAGGCTACTA
Found at i:23938022 original size:102 final size:101
Alignment explanation
Indices: 23937839--23938025 Score: 286
Period size: 101 Copynumber: 1.8 Consensus size: 101
23937829 AAAGTGATGG
*
23937839 TCACGTGTGTAGTACTATGTGCAGGCCACTACATGTACCGGAATGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGCAGGCCACTACATGTACCGGAATGATAGGTCACATGTGTAGTAC
*
23937904 TATGTGTAGGCTACTATGCGTACAGGATAGTTTCGA
66 TATGTGCAGGCTACTATGCGTACAGGATAGTTTCGA
* ** * *
23937940 TCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTATCGG-ATGGTAATGGTCACATGTGTAGT
1 TCACGTGTGTAGTACTATGTGCAGGCCACTACATGTACCGGAATGAT-A-GGTCACATGTGTAGT
23938004 ACTATGTGCAGGCTACTATGCG
64 ACTATGTGCAGGCTACTATGCG
23938026 AACCGAACAT
Statistics
Matches: 77, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
100 4 0.05
101 38 0.49
102 35 0.45
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGCAGGCCACTACATGTACCGGAATGATAGGTCACATGTGTAGTAC
TATGTGCAGGCTACTATGCGTACAGGATAGTTTCGA
Found at i:23938083 original size:45 final size:45
Alignment explanation
Indices: 23938027--23938121 Score: 154
Period size: 45 Copynumber: 2.1 Consensus size: 45
23938017 TACTATGCGA
* * *
23938027 ACCGAACATCATTGATTAGTAAGGTGGTTGCTATGTGTTGATTCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
*
23938072 ACCGGACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
23938117 ACCGA
1 ACCGA
23938122 GTATCTGTTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
Found at i:23943017 original size:11 final size:11
Alignment explanation
Indices: 23943003--23943041 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
23942993 GTTTTCTCCC
23943003 TATTTTGCTAT
1 TATTTTGCTAT
*
23943014 TATTTTACTAT
1 TATTTTGCTAT
* *
23943025 TATGTTGCTAC
1 TATTTTGCTAT
23943036 TATTTT
1 TATTTT
23943042 ATTGTTATTG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.21, C:0.10, G:0.08, T:0.62
Consensus pattern (11 bp):
TATTTTGCTAT
Found at i:23951836 original size:51 final size:50
Alignment explanation
Indices: 23951707--23951952 Score: 203
Period size: 51 Copynumber: 4.9 Consensus size: 50
23951697 TATTATCATT
** * *
23951707 CGATACACGTAGTAGCCTTTACATAGTACTACACACGTGATCA-AACTTTC
1 CGATACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATAA-TATC
* * * *
23951757 TGGTTCACATAGTAGCCTGCACATAGTACTACACACGTGACCATTAATATC
1 CGATACACGTAGTAGCCTGCACATAGTACTACACACGTGACCA-TAATATC
* * * * *
23951808 CGATACATGTAGTAGCCTGCACATAGTACTACACACATGATCGA-AGCTATT
1 CGATACACGTAGTAGCCTGCACATAGTACTACACACGTGA-CCATA-ATATC
* * * * * *
23951859 CGGTACGCATAGTAGCCTGCACATAGTACTACACATGTTA-CAT-TTCATTC
1 CGATACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATAAT-A-TC
** * *
23951909 TAATACATGTAGTAGCCTACACATAGTACTACACACGTGACCAT
1 CGATACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAT
23951953 CACTTTCACT
Statistics
Matches: 152, Mismatches: 36, Indels: 15
0.75 0.18 0.07
Matches are distributed among these distances:
48 1 0.01
49 2 0.01
50 69 0.45
51 76 0.50
52 4 0.03
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.27
Consensus pattern (50 bp):
CGATACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATAATATC
Found at i:23951849 original size:101 final size:101
Alignment explanation
Indices: 23951707--23951944 Score: 311
Period size: 101 Copynumber: 2.4 Consensus size: 101
23951697 TATTATCATT
* ** * *
23951707 CGATACACGTAGTAGCCTTTACATAGTACTACACACGTGATC-AAACT-TTCTGGTTCACATAGT
1 CGATACATGTAGTAGCCTACACATAGTACTACACACATGATCGAAACTATTC-GGTACACATAGT
23951770 AGCCTGCACATAGTACTACACACGTGACCA-TTAATATC
65 AGCCTGCACATAGTACTACACACGTGA-CATTTAAT-TC
* * *
23951808 CGATACATGTAGTAGCCTGCACATAGTACTACACACATGATCGAAGCTATTCGGTACGCATAGTA
1 CGATACATGTAGTAGCCTACACATAGTACTACACACATGATCGAAACTATTCGGTACACATAGTA
* * *
23951873 GCCTGCACATAGTACTACACATGTTACATTTCATTC
66 GCCTGCACATAGTACTACACACGTGACATTTAATTC
**
23951909 TAATACATGTAGTAGCCTACACATAGTACTACACAC
1 CGATACATGTAGTAGCCTACACATAGTACTACACAC
23951945 GTGACCATCA
Statistics
Matches: 121, Mismatches: 13, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
101 75 0.62
102 43 0.36
103 3 0.02
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.27
Consensus pattern (101 bp):
CGATACATGTAGTAGCCTACACATAGTACTACACACATGATCGAAACTATTCGGTACACATAGTA
GCCTGCACATAGTACTACACACGTGACATTTAATTC
Found at i:23960151 original size:40 final size:40
Alignment explanation
Indices: 23960103--23960184 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
23960093 CCTCATTGAG
23960103 ATCACCATGAAGAAACGCGTTATTGACATCAAGTTGTTGT
1 ATCACCATGAAGAAACGCGTTATTGACATCAAGTTGTTGT
23960143 ATCACCATGAAGAAACGCGTTATTGACATCAAGTTGTTGT
1 ATCACCATGAAGAAACGCGTTATTGACATCAAGTTGTTGT
23960183 AT
1 AT
23960185 ATGCCAATGT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (40 bp):
ATCACCATGAAGAAACGCGTTATTGACATCAAGTTGTTGT
Found at i:23960742 original size:18 final size:18
Alignment explanation
Indices: 23960698--23960753 Score: 69
Period size: 18 Copynumber: 3.1 Consensus size: 18
23960688 TGTAGGTGGG
*
23960698 TGGCTTGTGGACGATGGT
1 TGGCTTGTGGATGATGGT
*
23960716 TGG-TCTGTGGATGGTGGT
1 TGGCT-TGTGGATGATGGT
*
23960734 TGGCTTGTGAATGATGGT
1 TGGCTTGTGGATGATGGT
23960752 TG
1 TG
23960754 TGGAGGTGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
17 1 0.03
18 30 0.94
19 1 0.03
ACGTcount: A:0.11, C:0.07, G:0.45, T:0.38
Consensus pattern (18 bp):
TGGCTTGTGGATGATGGT
Found at i:23964219 original size:21 final size:22
Alignment explanation
Indices: 23964178--23964221 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
23964168 TATTTAGTCA
*
23964178 TATTTAGTCTTATTAATTTTTTT
1 TATTTAGTC-TATTAAATTTTTT
23964201 TATTTAGTC-ATTAAATTTTTT
1 TATTTAGTCTATTAAATTTTTT
23964222 AAAATTAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 11 0.55
23 9 0.45
ACGTcount: A:0.25, C:0.05, G:0.05, T:0.66
Consensus pattern (22 bp):
TATTTAGTCTATTAAATTTTTT
Found at i:23966873 original size:3 final size:3
Alignment explanation
Indices: 23966865--23967195 Score: 662
Period size: 3 Copynumber: 110.3 Consensus size: 3
23966855 TTAAAAATTG
23966865 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
23966913 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
23966961 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
23967009 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
23967057 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
23967105 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
23967153 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
23967196 GCACATTTAG
Statistics
Matches: 328, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 328 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:23967443 original size:2 final size:2
Alignment explanation
Indices: 23967436--23967466 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
23967426 TAGCTTAACC
*
23967436 TA TA TA TA TA TA TT TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
23967467 TGTTCACACT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (2 bp):
TA
Found at i:23972447 original size:51 final size:51
Alignment explanation
Indices: 23972382--23972584 Score: 397
Period size: 51 Copynumber: 4.0 Consensus size: 51
23972372 CATTCCTTTT
*
23972382 TCTTTGTAGGCTCATATTGTATATTTGTTCTACTTCACCAATTAAAAGTTG
1 TCTTTGTAGACTCATATTGTATATTTGTTCTACTTCACCAATTAAAAGTTG
23972433 TCTTTGTAGACTCATATTGTATATTTGTTCTACTTCACCAATTAAAAGTTG
1 TCTTTGTAGACTCATATTGTATATTTGTTCTACTTCACCAATTAAAAGTTG
23972484 TCTTTGTAGACTCATATTGTATATTTGTTCTACTTCACCAATTAAAAGTTG
1 TCTTTGTAGACTCATATTGTATATTTGTTCTACTTCACCAATTAAAAGTTG
23972535 TCTTTGTAGACTCATATTGTATATTTGTTCTACTTCACCAATTAAAAGTT
1 TCTTTGTAGACTCATATTGTATATTTGTTCTACTTCACCAATTAAAAGTT
23972585 TATAATCTTG
Statistics
Matches: 151, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
51 151 1.00
ACGTcount: A:0.27, C:0.16, G:0.12, T:0.45
Consensus pattern (51 bp):
TCTTTGTAGACTCATATTGTATATTTGTTCTACTTCACCAATTAAAAGTTG
Found at i:23973798 original size:16 final size:16
Alignment explanation
Indices: 23973777--23973828 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
23973767 TTTGGTTCGC
23973777 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
23973793 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
23973809 TGTAATGGAATAGAGG
1 TGTATTGGATTAGAGG
23973825 TGTA
1 TGTA
23973829 ATAGCAAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.29, C:0.00, G:0.37, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:23973875 original size:45 final size:44
Alignment explanation
Indices: 23973809--23973903 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 44
23973799 GGATTAGAGG
* *
23973809 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAAC-ACTGTTTGGTTGAA
* **
23973854 TGTAATGGAATAGAGGCGTAATAGTAAAACTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
23973898 TGTAAT
1 TGTAAT
23973904 AGAGGTGTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.33
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
Found at i:23974086 original size:18 final size:17
Alignment explanation
Indices: 23974065--23974099 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
23974055 TTATTATTTA
*
23974065 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
23974083 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
23974100 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:23974093 original size:28 final size:27
Alignment explanation
Indices: 23974023--23974095 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
23974013 TTTATTATCA
*
23974023 AAAATAAATAATTTAATCATATTTAAAC
1 AAAATATATAATTTAAT-ATATTTAAAC
* * **
23974051 ATAAT-TATTATTTAATATATTTTAATT
1 AAAATATATAATTTAATATA-TTTAAAC
23974078 AAAATATATAATTTAATA
1 AAAATATATAATTTAATA
23974096 AAATTCTTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
26 3 0.08
27 18 0.50
28 15 0.42
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (27 bp):
AAAATATATAATTTAATATATTTAAAC
Found at i:23974233 original size:18 final size:17
Alignment explanation
Indices: 23974212--23974246 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
23974202 TTATTATTAA
*
23974212 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
23974230 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
23974247 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:23974258 original size:147 final size:149
Alignment explanation
Indices: 23973984--23974258 Score: 509
Period size: 147 Copynumber: 1.9 Consensus size: 149
23973974 ATGATTATTG
*
23973984 TTATTGTTATTTAAATTTTAATAAGATTATTTATTATCAAAAATAAATAATTTAATCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
*
23974049 ACATAATTATTATTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
66 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
23974114 AGAAATTTGTTTTGGTAAA
131 AGAAATTTGTTTTGGTAAA
*
23974133 TTATT-TTATTTAAATTTTAATAAGATTA-TTAATATCAATAATAAATAATTTAATCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
23974196 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
66 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
23974259 ATATTCTTAT
Statistics
Matches: 123, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
147 95 0.77
148 23 0.19
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (149 bp):
TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
AGAAATTTGTTTTGGTAAA
Found at i:23974290 original size:54 final size:54
Alignment explanation
Indices: 23974232--23974410 Score: 128
Period size: 55 Copynumber: 3.1 Consensus size: 54
23974222 ATTAAAATAT
*
23974232 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAACC
1 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
** * * * * *
23974286 ATAATATATGATACTGTAAAATAT-AAAATAACATAATTATTATTAAATAT-AATATAATTAAAA
1 ATAAT-T-T-A-A---TAAAAT-TCTTAATAA-TTAA-TATTCTT--ATATGAAT-TTACTCAAA
*
23974349 TAT
53 -AC
*
23974352 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATC
1 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
23974406 ATAAT
1 ATAAT
23974411 ATATGATACT
Statistics
Matches: 91, Mismatches: 18, Indels: 32
0.65 0.13 0.23
Matches are distributed among these distances:
54 10 0.11
55 11 0.12
56 4 0.04
57 7 0.08
58 5 0.05
59 11 0.12
61 11 0.12
62 5 0.05
63 7 0.08
64 4 0.04
65 11 0.12
66 5 0.05
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.41
Consensus pattern (54 bp):
ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
Found at i:23974353 original size:18 final size:17
Alignment explanation
Indices: 23974332--23974366 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
23974322 TTATTATTAA
23974332 ATATAATATAATTAAAAT
1 ATATAATATAA-TAAAAT
*
23974350 ATATAATTTAATAAAAT
1 ATATAATATAATAAAAT
23974367 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
ATATAATATAATAAAAT
Found at i:23974481 original size:18 final size:17
Alignment explanation
Indices: 23974442--23974473 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
23974432 TTTTAAATAA
23974442 TTAATATTAAATATATT
1 TTAATATTAAATATATT
23974459 TTAAT-TTAAATATAT
1 TTAATATTAAATATAT
23974474 GATTTAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTAATATTAAATATATT
Found at i:23974498 original size:120 final size:120
Alignment explanation
Indices: 23974195--23974487 Score: 482
Period size: 120 Copynumber: 2.4 Consensus size: 120
23974185 ATCATATTTA
23974195 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
23974260 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTGTAAAATATAAAAT
66 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATATAAAAT
* *
23974315 AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* *
23974380 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATA-AAATTTT
66 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATATAAA--AT
* * *
23974436 AA-ATAATTAATATTAAATATATTTTAATTTAAATATATGATTTAATAAAATT
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
23974488 TAAAATAATT
Statistics
Matches: 161, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
119 3 0.02
120 155 0.96
121 3 0.02
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATATAAAAT
Found at i:23974598 original size:91 final size:91
Alignment explanation
Indices: 23974503--23974710 Score: 258
Period size: 91 Copynumber: 2.3 Consensus size: 91
23974493 TAATTATAAC
* * * *
23974503 TAATAAATTATATTTTATGAATTTGTATAATTTAAAATAA-TAATTATTACATATAATTTAATAA
1 TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAA-TATTAAATATAATTTAATAA
*
23974567 TAATATAAAATTTCATAAAATTCTTGA
65 TAATATAAAATTTCATAAAATTCTTAA
* * *
23974594 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAGT
1 TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
* * * *
23974659 GATATATAATTTCATGAAATTGTTAA
66 AATATAAAATTTCATAAAATTCTTAA
*
23974685 TAATAAAATGT-TCTTATATGAATTTA
1 TAAT-AAAT-TATATTATATGAATTTA
23974711 CTAAAATCAA
Statistics
Matches: 102, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
91 79 0.77
92 22 0.22
93 1 0.01
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (91 bp):
TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
AATATAAAATTTCATAAAATTCTTAA
Found at i:23984266 original size:50 final size:50
Alignment explanation
Indices: 23984203--23984443 Score: 236
Period size: 51 Copynumber: 4.8 Consensus size: 50
23984193 TATCATTCGA
* * * *
23984203 TACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAACTTTTCGG
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAACTATCCGG
* * **
23984253 TTCACGTAATAGCCTGCACATAGTACTACACACGTGACCATTAA-TATCCAA
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCA--AACTATCCGG
* * *
23984304 TACACGTAGTAGCCTGCATATAGTACTACACACGTGATCGAAGCTATCCGG
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGA-CCAAACTATCCGG
* * * * * ***
23984355 TACGCATAGTAGCCTGAACATAGTACTACACATGCGACCTTTC-ATTCCGG
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAACTA-TCCGG
* *
23984405 TACACGTA-TAGCCTACACATAGTACTACACATGTGACCA
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCA
23984444 TCACTTTCAC
Statistics
Matches: 155, Mismatches: 31, Indels: 11
0.79 0.16 0.06
Matches are distributed among these distances:
49 28 0.18
50 50 0.32
51 73 0.47
52 4 0.03
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (50 bp):
TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAACTATCCGG
Found at i:23984341 original size:101 final size:101
Alignment explanation
Indices: 23984202--23984440 Score: 293
Period size: 101 Copynumber: 2.4 Consensus size: 101
23984192 TTATCATTCG
* * * * *
23984202 ATACACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AAACTTTTCGGTTCACGTAATAGC
1 ATACACGTAGTAGCCTACACATAGTACTACACACGTGATCGAAACTATCCGGTACACATAATAGC
* *
23984266 CTGCACATAGTACTACACACGTGACCATTAATATCCA
66 CTGAACATAGTACTACACACGCGACCATTAAT-TCCA
* * * * *
23984303 ATACACGTAGTAGCCTGCATATAGTACTACACACGTGATCGAAGCTATCCGGTACGCATAGTAGC
1 ATACACGTAGTAGCCTACACATAGTACTACACACGTGATCGAAACTATCCGGTACACATAATAGC
* * * *
23984368 CTGAACATAGTACTACACATGCGACCTTTCATTCCG
66 CTGAACATAGTACTACACACGCGACCATTAATTCCA
* *
23984404 GTACACGTA-TAGCCTACACATAGTACTACACATGTGA
1 ATACACGTAGTAGCCTACACATAGTACTACACACGTGA
23984441 CCATCACTTT
Statistics
Matches: 118, Mismatches: 19, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
100 25 0.21
101 49 0.42
102 44 0.37
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (101 bp):
ATACACGTAGTAGCCTACACATAGTACTACACACGTGATCGAAACTATCCGGTACACATAATAGC
CTGAACATAGTACTACACACGCGACCATTAATTCCA
Found at i:23985785 original size:24 final size:24
Alignment explanation
Indices: 23985758--23985822 Score: 65
Period size: 24 Copynumber: 3.0 Consensus size: 24
23985748 TAACTAAAAC
23985758 ACTCTTTAAACAGTTCATAAACTT
1 ACTCTTTAAACAGTTCATAAACTT
*
23985782 ACTCTTT---CA-CT-A-AAAC--
1 ACTCTTTAAACAGTTCATAAACTT
23985798 ACTCTTTAAACAGTTCATAAACTT
1 ACTCTTTAAACAGTTCATAAACTT
23985822 A
1 A
23985823 TGTTGATAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 16
0.63 0.04 0.33
Matches are distributed among these distances:
16 7 0.23
18 4 0.13
19 3 0.10
20 2 0.06
21 3 0.10
22 4 0.13
24 8 0.26
ACGTcount: A:0.38, C:0.23, G:0.03, T:0.35
Consensus pattern (24 bp):
ACTCTTTAAACAGTTCATAAACTT
Found at i:23985845 original size:40 final size:40
Alignment explanation
Indices: 23985742--23985822 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
23985732 CACTTTGTAC
23985742 ACTCTTTAACTAAAACACTCTTTAAACAGTTCATAAACTT
1 ACTCTTTAACTAAAACACTCTTTAAACAGTTCATAAACTT
*
23985782 ACTCTTTCACTAAAACACTCTTTAAACAGTTCATAAACTT
1 ACTCTTTAACTAAAACACTCTTTAAACAGTTCATAAACTT
23985822 A
1 A
23985823 TGTTGATAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.40, C:0.23, G:0.02, T:0.35
Consensus pattern (40 bp):
ACTCTTTAACTAAAACACTCTTTAAACAGTTCATAAACTT
Found at i:23989603 original size:39 final size:39
Alignment explanation
Indices: 23989549--23989627 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
23989539 ATCAATGGAT
*
23989549 ACAATTAAAAGCTGTATGCAATTAGAACTCTAAGATTAC
1 ACAATTAAAAGCTGTATACAATTAGAACTCTAAGATTAC
23989588 ACAATTAAAAGCTGTATACAATTAGAACTCTAAGATTAC
1 ACAATTAAAAGCTGTATACAATTAGAACTCTAAGATTAC
23989627 A
1 A
23989628 TAACCATATC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.46, C:0.15, G:0.11, T:0.28
Consensus pattern (39 bp):
ACAATTAAAAGCTGTATACAATTAGAACTCTAAGATTAC
Found at i:23991050 original size:10 final size:10
Alignment explanation
Indices: 23991035--23991088 Score: 53
Period size: 10 Copynumber: 5.6 Consensus size: 10
23991025 ATTAAAAAGT
23991035 ATTTTTAATA
1 ATTTTTAATA
23991045 ATTTTT-ATA
1 ATTTTTAATA
*
23991054 CCTTTTTAATA
1 -ATTTTTAATA
23991065 A-TTTT-A-A
1 ATTTTTAATA
23991072 ATTTTTAAATA
1 ATTTTT-AATA
23991083 ATTTTT
1 ATTTTT
23991089 GTCAGTTGCT
Statistics
Matches: 36, Mismatches: 2, Indels: 11
0.73 0.04 0.22
Matches are distributed among these distances:
7 2 0.06
8 5 0.14
9 7 0.19
10 12 0.33
11 10 0.28
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (10 bp):
ATTTTTAATA
Found at i:23991438 original size:20 final size:22
Alignment explanation
Indices: 23991391--23991438 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 22
23991381 TAAATTTTAA
*
23991391 TAAAAATTTAATATAAAAAATTG
1 TAAAAATTT-ATATAAAAAATCG
23991414 T-AAAATTT-TAT-AAAAATCG
1 TAAAAATTTATATAAAAAATCG
23991433 TAAAAA
1 TAAAAA
23991439 AAATTATAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
19 8 0.35
20 7 0.30
22 7 0.30
23 1 0.04
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.33
Consensus pattern (22 bp):
TAAAAATTTATATAAAAAATCG
Found at i:23991512 original size:48 final size:48
Alignment explanation
Indices: 23991400--23991513 Score: 117
Period size: 48 Copynumber: 2.4 Consensus size: 48
23991390 ATAAAAATTT
*
23991400 AATATAAA-AAATTGTAAAATTTTATAAAAATCGTAAAAAAAATTATAA
1 AATATAAAGAAA-TATAAAATTTTATAAAAATCGTAAAAAAAATTATAA
* * * * *
23991448 AATATATAGAATTATAAAATTTTAT-AAAGTTGT-AAGAAAATTATACAA
1 AATATAAAGAAATATAAAATTTTATAAAAATCGTAAAAAAAATTAT--AA
*
23991496 AATGTAAAGAAATATAAA
1 AATATAAAGAAATATAAA
23991514 TTTCGTAAAA
Statistics
Matches: 54, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
46 10 0.19
47 6 0.11
48 36 0.67
49 2 0.04
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.32
Consensus pattern (48 bp):
AATATAAAGAAATATAAAATTTTATAAAAATCGTAAAAAAAATTATAA
Found at i:23991708 original size:19 final size:19
Alignment explanation
Indices: 23991686--23991747 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
23991676 TTTTTTTATG
23991686 ATTTTTATAAAATTTTACA
1 ATTTTTATAAAATTTTACA
* *
23991705 ATTTTTAT---TTTTTACG
1 ATTTTTATAAAATTTTACA
** *
23991721 ATTTTTATAAAAAATTCCA
1 ATTTTTATAAAATTTTACA
23991740 ATTTTTAT
1 ATTTTTAT
23991748 TCATTTTTAT
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
16 14 0.42
19 19 0.58
ACGTcount: A:0.35, C:0.06, G:0.02, T:0.56
Consensus pattern (19 bp):
ATTTTTATAAAATTTTACA
Found at i:23991719 original size:16 final size:16
Alignment explanation
Indices: 23991698--23991728 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
23991688 TTTTATAAAA
23991698 TTTTACAATTTTTATT
1 TTTTACAATTTTTATT
*
23991714 TTTTACGATTTTTAT
1 TTTTACAATTTTTAT
23991729 AAAAAATTCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.06, G:0.03, T:0.68
Consensus pattern (16 bp):
TTTTACAATTTTTATT
Found at i:23991724 original size:35 final size:35
Alignment explanation
Indices: 23991677--23991748 Score: 108
Period size: 35 Copynumber: 2.1 Consensus size: 35
23991667 GTTGTTAATT
* **
23991677 TTTTTTATGATTTTTATAAAATTTTACAATTTTTA
1 TTTTTTACGATTTTTATAAAAAATTACAATTTTTA
*
23991712 TTTTTTACGATTTTTATAAAAAATTCCAATTTTTA
1 TTTTTTACGATTTTTATAAAAAATTACAATTTTTA
23991747 TT
1 TT
23991749 CATTTTTATT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.60
Consensus pattern (35 bp):
TTTTTTACGATTTTTATAAAAAATTACAATTTTTA
Found at i:23991949 original size:84 final size:84
Alignment explanation
Indices: 23991846--23992013 Score: 237
Period size: 84 Copynumber: 2.0 Consensus size: 84
23991836 TTAATAAGAG
* * *
23991846 CAAGGGCTTAATTGCTTTTTTGAAAAATTTTAAGGGTCTTTATGATGCATTTTGAAAGTTCAAGT
1 CAAGGGCTTAATTACTTTTTTGAAAAAGTTTAAGGGTCTTTATGATGCAGTTTGAAAGTTCAAGT
23991911 ACCCAATTGAGTGAAAAAA
66 ACCCAATTGAGTGAAAAAA
* * * * *
23991930 CAAGGGCTTAATTATTTTTTTGAAGAAGTTTGAGGGTCTTTTTGATGTAGTTTGAAAGTTCAAGT
1 CAAGGGCTTAATTACTTTTTTGAAAAAGTTTAAGGGTCTTTATGATGCAGTTTGAAAGTTCAAGT
* * *
23991995 GCTCAATTGAGTGCAAAAA
66 ACCCAATTGAGTGAAAAAA
23992014 GAAGAAAGGA
Statistics
Matches: 73, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
84 73 1.00
ACGTcount: A:0.32, C:0.10, G:0.21, T:0.37
Consensus pattern (84 bp):
CAAGGGCTTAATTACTTTTTTGAAAAAGTTTAAGGGTCTTTATGATGCAGTTTGAAAGTTCAAGT
ACCCAATTGAGTGAAAAAA
Found at i:23995041 original size:10 final size:9
Alignment explanation
Indices: 23995027--23995068 Score: 57
Period size: 9 Copynumber: 4.6 Consensus size: 9
23995017 CAAAAACTAT
23995027 TAAAAATTA
1 TAAAAATTA
*
23995036 TAAAAATAA
1 TAAAAATTA
*
23995045 TTAAAATTA
1 TAAAAATTA
23995054 TAAAAAATTA
1 T-AAAAATTA
23995064 TAAAA
1 TAAAA
23995069 TTTGGCATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
9 20 0.71
10 8 0.29
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (9 bp):
TAAAAATTA
Found at i:24008899 original size:48 final size:48
Alignment explanation
Indices: 24008847--24008981 Score: 144
Period size: 48 Copynumber: 2.8 Consensus size: 48
24008837 CTTTGTGTAA
* * * *
24008847 TAACAGACTCTCGATGGCCTGTACATAGCCCGTGCCACCCTTGTATCT
1 TAACAGAATATCGATGGCCTGCACACAGCCCGTGCCACCCTTGTATCT
* * *
24008895 TAACAGAATATTGGTGGCCTGCACACAGTCCGTGCCACCCTTGTATCT
1 TAACAGAATATCGATGGCCTGCACACAGCCCGTGCCACCCTTGTATCT
* * * * * *
24008943 TAAAAGAATATTGGTGGCCCGACACACTGTCCGTGCCAC
1 TAACAGAATATCGATGGCCTG-CACACAGCCCGTGCCAC
24008982 ATATGCGACC
Statistics
Matches: 76, Mismatches: 10, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
48 60 0.79
49 16 0.21
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (48 bp):
TAACAGAATATCGATGGCCTGCACACAGCCCGTGCCACCCTTGTATCT
Found at i:24010594 original size:105 final size:104
Alignment explanation
Indices: 24010423--24010678 Score: 343
Period size: 105 Copynumber: 2.5 Consensus size: 104
24010413 GGTGGATCCT
* * * ** *
24010423 GCACTTAGC-ACCACCACTGAATTGGGGAATCAGCACACAGCAACCCCTTGGGGGAATCAGCACT
1 GCACTTAGCAACCACCAATGAGTAGGGGAATCAGCACTTAGCAACCCCTCGGGGGAATCAGCACT
** * * *
24010487 TAGCAACCCCCTTTTTCATTTCAAAGATATGGTGGAATCA
66 TAGCAACCCCCTTTCACATTT-AAAAATACGGTAGAATCA
* *
24010527 GCACTTAGCAACCACCAGTGGGTAGGGGAATCAGCACTTAGCAACCCCTCGGGGGAATCAGCACT
1 GCACTTAGCAACCACCAATGAGTAGGGGAATCAGCACTTAGCAACCCCTCGGGGGAATCAGCACT
* *
24010592 TAGCAACCCCCTTTCACATTTAAAAATACGGTAGACTCG
66 TAGCAACCCCCTTTCACATTTAAAAATACGGTAGAATCA
* *
24010631 GCACATAGCAACCACCAATAAGTAGGGGAATCAGCACTTAGCAACCCC
1 GCACTTAGCAACCACCAATGAGTAGGGGAATCAGCACTTAGCAACCCC
24010679 CTTTCACATT
Statistics
Matches: 133, Mismatches: 18, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
104 66 0.50
105 67 0.50
ACGTcount: A:0.31, C:0.29, G:0.21, T:0.19
Consensus pattern (104 bp):
GCACTTAGCAACCACCAATGAGTAGGGGAATCAGCACTTAGCAACCCCTCGGGGGAATCAGCACT
TAGCAACCCCCTTTCACATTTAAAAATACGGTAGAATCA
Found at i:24010671 original size:77 final size:77
Alignment explanation
Indices: 24010578--24010909 Score: 585
Period size: 77 Copynumber: 4.3 Consensus size: 77
24010568 CAACCCCTCG
24010578 GGGGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAAATACGGTAGACTCGGCACATAGCAAC
1 GGGGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAAATACGGTAGACTCGGCACATAGCAAC
24010643 CACCAATAAGTA
66 CACCAATAAGTA
24010655 GGGGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAAATACGGTAGACTCGGCACATAGCAAC
1 GGGGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAAATACGGTAGACTCGGCACATAGCAAC
24010720 CACCAATAAGTA
66 CACCAATAAGTA
24010732 GGGGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAAATACGGTAGACTCGGCACATAGCAAC
1 GGGGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAAATACGGTAGACTCGGCACATAGCAAC
24010797 CACCAATAAGTA
66 CACCAATAAGTA
* * * *
24010809 GGGGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAAATACGGTGGAATCAGCACTTAGCAAC
1 GGGGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAAATACGGTAGACTCGGCACATAGCAAC
*
24010874 CACCAATGAA-TC
66 CACCAAT-AAGTA
**
24010886 GGGGAATCAGCACACAGCAACCCC
1 GGGGAATCAGCACTTAGCAACCCC
24010910 TTTATATGTA
Statistics
Matches: 247, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
77 245 0.99
78 2 0.01
ACGTcount: A:0.36, C:0.28, G:0.17, T:0.19
Consensus pattern (77 bp):
GGGGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAAATACGGTAGACTCGGCACATAGCAAC
CACCAATAAGTA
Found at i:24010680 original size:105 final size:105
Alignment explanation
Indices: 24010446--24010678 Score: 333
Period size: 104 Copynumber: 2.2 Consensus size: 105
24010436 CCACTGAATT
** * **
24010446 GGGGAATCAGCACACAGCAACCCCTTGGGGGAATCAGCACTTAGCAACCCCCTTTTTCATTTCAA
1 GGGGAATCAGCACTTAGCAACCCCTCGGGGGAATCAGCACTTAGCAACCCCCTTTCACATTTCAA
* * * * * **
24010511 AGATATGGTGGAATCAGCACTTAGCAACCACCAGTGGGTA
66 AAATACGGTAGAATCAGCACATAGCAACCACCAATAAGTA
24010551 GGGGAATCAGCACTTAGCAACCCCTCGGGGGAATCAGCACTTAGCAACCCCCTTTCACATTT-AA
1 GGGGAATCAGCACTTAGCAACCCCTCGGGGGAATCAGCACTTAGCAACCCCCTTTCACATTTCAA
* *
24010615 AAATACGGTAGACTCGGCACATAGCAACCACCAATAAGTA
66 AAATACGGTAGAATCAGCACATAGCAACCACCAATAAGTA
24010655 GGGGAATCAGCACTTAGCAACCCC
1 GGGGAATCAGCACTTAGCAACCCC
24010679 CTTTCACATT
Statistics
Matches: 114, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
104 57 0.50
105 57 0.50
ACGTcount: A:0.31, C:0.28, G:0.21, T:0.19
Consensus pattern (105 bp):
GGGGAATCAGCACTTAGCAACCCCTCGGGGGAATCAGCACTTAGCAACCCCCTTTCACATTTCAA
AAATACGGTAGAATCAGCACATAGCAACCACCAATAAGTA
Found at i:24013991 original size:21 final size:21
Alignment explanation
Indices: 24013962--24014011 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
24013952 TTTTGCTCTG
* *
24013962 CTCTACTTCTCTCGCTG-CAGC
1 CTCTGCTTCCCTCGCTGCCA-C
24013983 CTCTGCTTCCCTCGCTGCCAC
1 CTCTGCTTCCCTCGCTGCCAC
24014004 CTCTGCTT
1 CTCTGCTT
24014012 TAAGTTGTAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 24 0.92
22 2 0.08
ACGTcount: A:0.06, C:0.46, G:0.14, T:0.34
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCCAC
Found at i:24017286 original size:12 final size:12
Alignment explanation
Indices: 24017269--24017295 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
24017259 AAATTATGAC
24017269 ATTATTAATATT
1 ATTATTAATATT
24017281 ATTATTAATATT
1 ATTATTAATATT
24017293 ATT
1 ATT
24017296 TAAAAAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
ATTATTAATATT
Found at i:24017843 original size:13 final size:13
Alignment explanation
Indices: 24017825--24017887 Score: 54
Period size: 13 Copynumber: 4.5 Consensus size: 13
24017815 GACTAAAGCG
*
24017825 ACCCAAACCCCGA
1 ACCCAAACCCCAA
24017838 ACCCAAACCCCAA
1 ACCCAAACCCCAA
*
24017851 ACCTTAAACCCCCAA
1 ACC-CAAA-CCCCAA
*
24017866 ACACCCAACCCCTAA
1 AC-CCAAACCCC-AA
*
24017881 GCCCAAA
1 ACCCAAA
24017888 ATACTAAACC
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
13 15 0.38
14 11 0.28
15 13 0.32
16 1 0.03
ACGTcount: A:0.41, C:0.51, G:0.03, T:0.05
Consensus pattern (13 bp):
ACCCAAACCCCAA
Found at i:24018475 original size:114 final size:114
Alignment explanation
Indices: 24018181--24019966 Score: 2169
Period size: 114 Copynumber: 15.7 Consensus size: 114
24018171 AAACCTACAT
* * *
24018181 GCGTTTTTACATGAGCGCCACTAATTCTAATATACATCAAGACCAAACGCTGCGTTTTGGTTAAG
1 GCGTTTTTCCATAAGCGCCACTAATTCTAATATACATTAAGACCAAACGCTGCGTTTTGGTTAAG
*
24018246 ATATTTTGCGGCGATTCTTACAAAGCGCCTCTAATACTCTGCTTTAGCG
66 ATATTTTGCGGCGTTTCTTACAAAGCGCCTCTAATACTCTGCTTTAGCG
* * * * * * * *
24018295 GCCTTTTT-CGTAACCGCCACTAATTTTTATATTCATCAAGACCAAACGATGCGTTTTGGTTAAG
1 GCGTTTTTCCATAAGCGCCACTAATTCTAATATACATTAAGACCAAACGCTGCGTTTTGGTTAAG
* * * * * * * * *
24018359 ATATCTTGTGGCATTTCATACAAAACGCCGCCAATACTATGCTATAGCG
66 ATATTTTGCGGCGTTTCTTACAAAGCGCCTCTAATACTCTGCTTTAGCG
* * *
24018408 GCGTTTTTCCACAAGCGCCACTAATTCTAATATACATTAATACCAAACGCTACGTTTTGGTTAAG
1 GCGTTTTTCCATAAGCGCCACTAATTCTAATATACATTAAGACCAAACGCTGCGTTTTGGTTAAG
24018473 ATATTTTGCGGCGTTTCTTACAAAGCGCCTCTAATACTCT-CATTTAGCG
66 ATATTTTGCGGCGTTTCTTACAAAGCGCCTCTAATACTCTGC-TTTAGCG
* * * * *
24018522 GCGTTTTTCCATAACCGCCACTAATTCTTATATACCTCAAGACCAAACGATGCGTTTTGGTTAAG
1 GCGTTTTTCCATAAGCGCCACTAATTCTAATATACATTAAGACCAAACGCTGCGTTTTGGTTAAG
* * * *
24018587 ATATTTTGCGGCGTTTTCTATA-AAA-CGGCGCTAATACTGTGCTATAGCG
66 ATATTTTGCGGCG-TTTCT-TACAAAGCGCCTCTAATACTCTGCTTTAGCG
*
24018636 GCGTTTTTCCACAAGCGCCACTAATTCTAATATACATTAAGACCAAACGCTGCGTTTTGGTTAAG
1 GCGTTTTTCCATAAGCGCCACTAATTCTAATATACATTAAGACCAAACGCTGCGTTTTGGTTAAG
*
24018701 ATATTTTACGGCGTTTCTTACAAAGCGCCTCTAATACTCT-CATTTAGCG
66 ATATTTTGCGGCGTTTCTTACAAAGCGCCTCTAATACTCTGC-TTTAGCG
* ** * * *
24018750 GCGTTTTTCCATAACCGCCACTAATTCTTTTATACCTCAAGACCAAACGATGCGTTTTGGTTAAG
1 GCGTTTTTCCATAAGCGCCACTAATTCTAATATACATTAAGACCAAACGCTGCGTTTTGGTTAAG
* * * * * * * * *
24018815 ATATCTTGTGGCATTTCATACAAAACGCCGCCAATACTATGCTATAGCG
66 ATATTTTGCGGCGTTTCTTACAAAGCGCCTCTAATACTCTGCTTTAGCG
* * *
24018864 GCGTTTTTCCACAAGCGCCACTAATTCTAATATACATTAAGACTAAACGCTGCATTTTGGTTAAG
1 GCGTTTTTCCATAAGCGCCACTAATTCTAATATACATTAAGACCAAACGCTGCGTTTTGGTTAAG
* * *
24018929 ATATTTTGTGGCGTTTCTTACAAAGCGCCTTTAATACTCTCCTTTAGCG
66 ATATTTTGCGGCGTTTCTTACAAAGCGCCTCTAATACTCTGCTTTAGCG
* * * * * * * *
24018978 GCATTTTTTCGTAACCGCCACTAATTCTTATATACCTTAAGACCAAATGATGCGTTTTGGTTAAG
1 GCGTTTTTCCATAAGCGCCACTAATTCTAATATACATTAAGACCAAACGCTGCGTTTTGGTTAAG
* * *
24019043 ATATTTTGCGGCGTTTTCTATA-AAA-CGCCGCTAATACTGTGCTATAGCG
66 ATATTTTGCGGCG-TTTCT-TACAAAGCGCCTCTAATACTCTGCTTTAGCG
* * *
24019092 GCGTTTTTCCACAAGCGCCACTAATTCTAATATACATTAAGACTAAACGCTGCATTTTGGTTAAG
1 GCGTTTTTCCATAAGCGCCACTAATTCTAATATACATTAAGACCAAACGCTGCGTTTTGGTTAAG
* * *
24019157 ATATTTTGTGGCGTTTCTTACAAAGCGCCTTTAATACTCTCCTTTAGCG
66 ATATTTTGCGGCGTTTCTTACAAAGCGCCTCTAATACTCTGCTTTAGCG
* * * * * * * *
24019206 GCATTTTTTCGTAACCGCCACTAATTCTTATATACCTTAAGACCAAATGATGCGTTTTGGTTAAG
1 GCGTTTTTCCATAAGCGCCACTAATTCTAATATACATTAAGACCAAACGCTGCGTTTTGGTTAAG
* * *
24019271 ATATTTTGCGGCGTTTTCTATA-AAA-CGCCGCTAATACTGTGCTATAGCG
66 ATATTTTGCGGCG-TTTCT-TACAAAGCGCCTCTAATACTCTGCTTTAGCG
* * *
24019320 GCGTTTTTCCACAAGCGCCACTAATTCTAATATACATTAAGACTAAACGCTGCATTTTGGTTAAG
1 GCGTTTTTCCATAAGCGCCACTAATTCTAATATACATTAAGACCAAACGCTGCGTTTTGGTTAAG
* * *
24019385 ATATTTTGTGGCGTTTCTTACAAAGCGCCTTTAATACTCTCCTTTAGCG
66 ATATTTTGCGGCGTTTCTTACAAAGCGCCTCTAATACTCTGCTTTAGCG
* * * * * * * *
24019434 GCATTTTTTCGTAACCGCCACTAATTCTTATATACCTTAAGACCAAATGATGCGTTTTGGTTAAG
1 GCGTTTTTCCATAAGCGCCACTAATTCTAATATACATTAAGACCAAACGCTGCGTTTTGGTTAAG
* * *
24019499 ATATTTTGCGGCGTTTTCTATA-AAA-CGCCGCTAATACTGTGCTATAGCG
66 ATATTTTGCGGCG-TTTCT-TACAAAGCGCCTCTAATACTCTGCTTTAGCG
* * *
24019548 GCGTTTTTCCACAAGCGCCACTAATTCTAATATACATTAAGACTAAACGCTGCATTTTGGTTAAG
1 GCGTTTTTCCATAAGCGCCACTAATTCTAATATACATTAAGACCAAACGCTGCGTTTTGGTTAAG
* * *
24019613 ATATTTTGTGGCGTTTCTTACAAAGCGCCTTTAATACTCTCCTTTAGCG
66 ATATTTTGCGGCGTTTCTTACAAAGCGCCTCTAATACTCTGCTTTAGCG
* * * * * * * *
24019662 GCATTTTTTCGTAACCGCCACTAATTCTTATATACCTTAAGACCAAATGATGCGTTTTGGTTAAG
1 GCGTTTTTCCATAAGCGCCACTAATTCTAATATACATTAAGACCAAACGCTGCGTTTTGGTTAAG
* * *
24019727 ATATTTTGCGGCGTTTTCTATA-AAA-CGCCGCTAATACTGTGCTATAGCG
66 ATATTTTGCGGCG-TTTCT-TACAAAGCGCCTCTAATACTCTGCTTTAGCG
*
24019776 GCGTTTTTCCACAAGCGCCACTAATTCTAATATACATTAAGACCAAACGCTGCGTTTTGGTTAAG
1 GCGTTTTTCCATAAGCGCCACTAATTCTAATATACATTAAGACCAAACGCTGCGTTTTGGTTAAG
* *
24019841 ATATTTTACGGCGTTTCTTACAAAGCGCCTCTAATACTCTCCTTTAGCG
66 ATATTTTGCGGCGTTTCTTACAAAGCGCCTCTAATACTCTGCTTTAGCG
* * * * *** * * * *
24019890 GCG-TTTTCCATAAACGCCACCAAGTCTAATATACCTCGGGAACAAACGATGCGTTTTGGCTAAC
1 GCGTTTTTCCATAAGCGCCACTAATTCTAATATACATTAAGACCAAACGCTGCGTTTTGGTTAAG
*
24019954 ATTTTTTGCGGCG
66 ATATTTTGCGGCG
24019967 CTTACAAATA
Statistics
Matches: 1403, Mismatches: 244, Indels: 51
0.83 0.14 0.03
Matches are distributed among these distances:
112 10 0.01
113 197 0.14
114 1144 0.82
115 42 0.03
116 10 0.01
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (114 bp):
GCGTTTTTCCATAAGCGCCACTAATTCTAATATACATTAAGACCAAACGCTGCGTTTTGGTTAAG
ATATTTTGCGGCGTTTCTTACAAAGCGCCTCTAATACTCTGCTTTAGCG
Found at i:24018671 original size:228 final size:228
Alignment explanation
Indices: 24018194--24019966 Score: 2870
Period size: 228 Copynumber: 7.8 Consensus size: 228
24018184 TTTTTACATG
* *
24018194 AGCGCCACTAATTCTAATATACATCAAGACCAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCG
1 AGCGCCACTAATTCTAATATACATTAAGACCAAACGCTGCATTTTGGTTAAGATATTTTGCGGCG
* * * *
24018259 ATTCTTACAAAGCGCCTCTAATACTCTGCTTTAGCGGC-CTTTTTCGTAACCGCCACTAATTTTT
66 TTTCTTACAAAGCGCCTCTAATACTCTCCTTTAGCGGCATTTTTTCGTAACCGCCACTAATTCTT
* * * * * *
24018323 ATATTCATCAAGACCAAACGATGCGTTTTGGTTAAGATATCTTGTGGC-ATTTCATACAAAACGC
131 ATATACCTCAAGACCAAACGATGCGTTTTGGTTAAGATATTTTGCGGCGTTTTC-TATAAAACGC
* *
24018387 CGCCAATACTATGCTATAGCGGCGTTTTTCCACA
195 CGCTAATACTGTGCTATAGCGGCGTTTTTCCACA
* * *
24018421 AGCGCCACTAATTCTAATATACATTAATACCAAACGCTACGTTTTGGTTAAGATATTTTGCGGCG
1 AGCGCCACTAATTCTAATATACATTAAGACCAAACGCTGCATTTTGGTTAAGATATTTTGCGGCG
* * * *
24018486 TTTCTTACAAAGCGCCTCTAATACTCTCATTTAGCGGCGTTTTTCCATAACCGCCACTAATTCTT
66 TTTCTTACAAAGCGCCTCTAATACTCTCCTTTAGCGGCATTTTTTCGTAACCGCCACTAATTCTT
*
24018551 ATATACCTCAAGACCAAACGATGCGTTTTGGTTAAGATATTTTGCGGCGTTTTCTATAAAACGGC
131 ATATACCTCAAGACCAAACGATGCGTTTTGGTTAAGATATTTTGCGGCGTTTTCTATAAAACGCC
24018616 GCTAATACTGTGCTATAGCGGCGTTTTTCCACA
196 GCTAATACTGTGCTATAGCGGCGTTTTTCCACA
* *
24018649 AGCGCCACTAATTCTAATATACATTAAGACCAAACGCTGCGTTTTGGTTAAGATATTTTACGGCG
1 AGCGCCACTAATTCTAATATACATTAAGACCAAACGCTGCATTTTGGTTAAGATATTTTGCGGCG
* * * *
24018714 TTTCTTACAAAGCGCCTCTAATACTCTCATTTAGCGGCGTTTTTCCATAACCGCCACTAATTCTT
66 TTTCTTACAAAGCGCCTCTAATACTCTCCTTTAGCGGCATTTTTTCGTAACCGCCACTAATTCTT
* * * * *
24018779 TTATACCTCAAGACCAAACGATGCGTTTTGGTTAAGATATCTTGTGGC-ATTTCATACAAAACGC
131 ATATACCTCAAGACCAAACGATGCGTTTTGGTTAAGATATTTTGCGGCGTTTTC-TATAAAACGC
* *
24018843 CGCCAATACTATGCTATAGCGGCGTTTTTCCACA
195 CGCTAATACTGTGCTATAGCGGCGTTTTTCCACA
* *
24018877 AGCGCCACTAATTCTAATATACATTAAGACTAAACGCTGCATTTTGGTTAAGATATTTTGTGGCG
1 AGCGCCACTAATTCTAATATACATTAAGACCAAACGCTGCATTTTGGTTAAGATATTTTGCGGCG
*
24018942 TTTCTTACAAAGCGCCTTTAATACTCTCCTTTAGCGGCATTTTTTCGTAACCGCCACTAATTCTT
66 TTTCTTACAAAGCGCCTCTAATACTCTCCTTTAGCGGCATTTTTTCGTAACCGCCACTAATTCTT
* *
24019007 ATATACCTTAAGACCAAATGATGCGTTTTGGTTAAGATATTTTGCGGCGTTTTCTATAAAACGCC
131 ATATACCTCAAGACCAAACGATGCGTTTTGGTTAAGATATTTTGCGGCGTTTTCTATAAAACGCC
24019072 GCTAATACTGTGCTATAGCGGCGTTTTTCCACA
196 GCTAATACTGTGCTATAGCGGCGTTTTTCCACA
* *
24019105 AGCGCCACTAATTCTAATATACATTAAGACTAAACGCTGCATTTTGGTTAAGATATTTTGTGGCG
1 AGCGCCACTAATTCTAATATACATTAAGACCAAACGCTGCATTTTGGTTAAGATATTTTGCGGCG
*
24019170 TTTCTTACAAAGCGCCTTTAATACTCTCCTTTAGCGGCATTTTTTCGTAACCGCCACTAATTCTT
66 TTTCTTACAAAGCGCCTCTAATACTCTCCTTTAGCGGCATTTTTTCGTAACCGCCACTAATTCTT
* *
24019235 ATATACCTTAAGACCAAATGATGCGTTTTGGTTAAGATATTTTGCGGCGTTTTCTATAAAACGCC
131 ATATACCTCAAGACCAAACGATGCGTTTTGGTTAAGATATTTTGCGGCGTTTTCTATAAAACGCC
24019300 GCTAATACTGTGCTATAGCGGCGTTTTTCCACA
196 GCTAATACTGTGCTATAGCGGCGTTTTTCCACA
* *
24019333 AGCGCCACTAATTCTAATATACATTAAGACTAAACGCTGCATTTTGGTTAAGATATTTTGTGGCG
1 AGCGCCACTAATTCTAATATACATTAAGACCAAACGCTGCATTTTGGTTAAGATATTTTGCGGCG
*
24019398 TTTCTTACAAAGCGCCTTTAATACTCTCCTTTAGCGGCATTTTTTCGTAACCGCCACTAATTCTT
66 TTTCTTACAAAGCGCCTCTAATACTCTCCTTTAGCGGCATTTTTTCGTAACCGCCACTAATTCTT
* *
24019463 ATATACCTTAAGACCAAATGATGCGTTTTGGTTAAGATATTTTGCGGCGTTTTCTATAAAACGCC
131 ATATACCTCAAGACCAAACGATGCGTTTTGGTTAAGATATTTTGCGGCGTTTTCTATAAAACGCC
24019528 GCTAATACTGTGCTATAGCGGCGTTTTTCCACA
196 GCTAATACTGTGCTATAGCGGCGTTTTTCCACA
* *
24019561 AGCGCCACTAATTCTAATATACATTAAGACTAAACGCTGCATTTTGGTTAAGATATTTTGTGGCG
1 AGCGCCACTAATTCTAATATACATTAAGACCAAACGCTGCATTTTGGTTAAGATATTTTGCGGCG
*
24019626 TTTCTTACAAAGCGCCTTTAATACTCTCCTTTAGCGGCATTTTTTCGTAACCGCCACTAATTCTT
66 TTTCTTACAAAGCGCCTCTAATACTCTCCTTTAGCGGCATTTTTTCGTAACCGCCACTAATTCTT
* *
24019691 ATATACCTTAAGACCAAATGATGCGTTTTGGTTAAGATATTTTGCGGCGTTTTCTATAAAACGCC
131 ATATACCTCAAGACCAAACGATGCGTTTTGGTTAAGATATTTTGCGGCGTTTTCTATAAAACGCC
24019756 GCTAATACTGTGCTATAGCGGCGTTTTTCCACA
196 GCTAATACTGTGCTATAGCGGCGTTTTTCCACA
* *
24019789 AGCGCCACTAATTCTAATATACATTAAGACCAAACGCTGCGTTTTGGTTAAGATATTTTACGGCG
1 AGCGCCACTAATTCTAATATACATTAAGACCAAACGCTGCATTTTGGTTAAGATATTTTGCGGCG
* * * * * * *
24019854 TTTCTTACAAAGCGCCTCTAATACTCTCCTTTAGCGGC-GTTTTCCATAAACGCCACCAAGTCTA
66 TTTCTTACAAAGCGCCTCTAATACTCTCCTTTAGCGGCATTTTTTCGTAACCGCCACTAATTCTT
** * * * *
24019918 ATATACCTCGGGAACAAACGATGCGTTTTGGCTAACATTTTTTGCGGCG
131 ATATACCTCAAGACCAAACGATGCGTTTTGGTTAAGATATTTTGCGGCG
24019967 CTTACAAATA
Statistics
Matches: 1474, Mismatches: 68, Indels: 8
0.95 0.04 0.01
Matches are distributed among these distances:
227 161 0.11
228 1305 0.89
229 8 0.01
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (228 bp):
AGCGCCACTAATTCTAATATACATTAAGACCAAACGCTGCATTTTGGTTAAGATATTTTGCGGCG
TTTCTTACAAAGCGCCTCTAATACTCTCCTTTAGCGGCATTTTTTCGTAACCGCCACTAATTCTT
ATATACCTCAAGACCAAACGATGCGTTTTGGTTAAGATATTTTGCGGCGTTTTCTATAAAACGCC
GCTAATACTGTGCTATAGCGGCGTTTTTCCACA
Found at i:24021196 original size:23 final size:23
Alignment explanation
Indices: 24021160--24021204 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
24021150 AATCATTTCA
*
24021160 TATACTATTGTCAATTCATAATAT
1 TATACCATTGTCAATTCA-AATAT
24021184 TATACCATT-TCAATTCAAATA
1 TATACCATTGTCAATTCAAATA
24021205 ATACATTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 4 0.20
23 8 0.40
24 8 0.40
ACGTcount: A:0.40, C:0.16, G:0.02, T:0.42
Consensus pattern (23 bp):
TATACCATTGTCAATTCAAATAT
Found at i:24026133 original size:19 final size:19
Alignment explanation
Indices: 24026109--24026147 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
24026099 TACTTGTATT
24026109 TTTCTTTGTTTTTTAAGTG
1 TTTCTTTGTTTTTTAAGTG
24026128 TTTCTTTGTTTTTTAAGTG
1 TTTCTTTGTTTTTTAAGTG
24026147 T
1 T
24026148 AACAAGTACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.10, C:0.05, G:0.15, T:0.69
Consensus pattern (19 bp):
TTTCTTTGTTTTTTAAGTG
Found at i:24026274 original size:38 final size:38
Alignment explanation
Indices: 24026220--24026298 Score: 122
Period size: 38 Copynumber: 2.1 Consensus size: 38
24026210 AAAAGTATTA
* *
24026220 TTTTTTTATTTTTGAGTTGGGGAGGGACTTTGAGTAGT
1 TTTTTTTATTTATGAGTTGGGGAAGGACTTTGAGTAGT
* *
24026258 TTTTTTTATTTATGAGTTGGGGAATGATTTTGAGTAGT
1 TTTTTTTATTTATGAGTTGGGGAAGGACTTTGAGTAGT
24026296 TTT
1 TTT
24026299 AAGTATTGTT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.18, C:0.01, G:0.28, T:0.53
Consensus pattern (38 bp):
TTTTTTTATTTATGAGTTGGGGAAGGACTTTGAGTAGT
Found at i:24030970 original size:25 final size:25
Alignment explanation
Indices: 24030927--24030992 Score: 73
Period size: 25 Copynumber: 2.6 Consensus size: 25
24030917 TATACATGAT
**
24030927 GCTCATACGAGCTACGAATCGGTATA
1 GCTCATACGAGCTGTGAATCGGTA-A
*
24030953 -CTC-TGACGAGCTGTGAATGGGTAA
1 GCTCAT-ACGAGCTGTGAATCGGTAA
24030977 GCTCATACGAGCTGTG
1 GCTCATACGAGCTGTG
24030993 GTGTGTTCGC
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
24 2 0.06
25 31 0.91
26 1 0.03
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (25 bp):
GCTCATACGAGCTGTGAATCGGTAA
Found at i:24031835 original size:15 final size:14
Alignment explanation
Indices: 24031815--24031844 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
24031805 CACGGCTAGG
24031815 TTTTCTTTTTTCTTT
1 TTTTCTTTTTT-TTT
24031830 TTTTCTTTTTTTTT
1 TTTTCTTTTTTTTT
24031844 T
1 T
24031845 GTGGAAGATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (14 bp):
TTTTCTTTTTTTTT
Found at i:24038275 original size:79 final size:82
Alignment explanation
Indices: 24038164--24038348 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
24038154 GCTACTCGTT
* * *
24038164 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
24038227 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
24038244 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
24038307 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
24038324 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
24038349 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:24038348 original size:40 final size:40
Alignment explanation
Indices: 24038145--24038348 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
24038135 CGGAATTTAA
** *
24038145 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
24038185 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
24038225 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
24038264 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
24038304 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
24038344 CCGGA
1 CCGGA
24038349 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:24045681 original size:40 final size:40
Alignment explanation
Indices: 24045581--24045845 Score: 286
Period size: 40 Copynumber: 6.7 Consensus size: 40
24045571 GCTCCTCGTT
* * * *
24045581 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* **
24045621 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
24045660 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
24045700 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
24045740 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
24045780 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
24045821 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
24045846 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 22, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
39 39 0.20
40 143 0.73
41 15 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:24045805 original size:80 final size:80
Alignment explanation
Indices: 24045548--24045845 Score: 263
Period size: 80 Copynumber: 3.7 Consensus size: 80
24045538 AAATCACGTA
* ** * * *
24045548 CCTTCGGGATTTAA-CCGGATATAGCTC-CTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTTT
1 CCTTCGGGACTTAACCCGGATATAG-TCACTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
24045610 AGTAACTCACAC-AATG
64 AATAACTCGCACAAATG
* * * *
24045626 CCTTCGGGACATAACCCGGATTTA-ACAACTCGCACGAATGCCTTCGGGACTTAACCCGG-ATTT
1 CCTTCGGGACTTAACCCGGATATAGTC-ACTCGCAC-AAAGCCTTCGGGACTTAACCCGGAATTT
*
24045689 AATAACTCGCACGAATG
64 AATAACTCGCACAAATG
* *
24045706 CCTTCGGGACTTAACCCGGATTTAGT-ATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATTT
1 CCTTCGGGACTTAACCCGGATATAGTCA-CTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
24045770 -GTATCTCGCACAAATG
64 AATAACTCGCACAAATG
** * * *
24045786 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTAACCCGGATATAGTCAC-TCGCACAAAGCCTTCGGGACTTAACCCGGA
24045846 CAGCATTCAA
Statistics
Matches: 182, Mismatches: 26, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
77 1 0.01
78 12 0.07
79 50 0.27
80 106 0.58
81 13 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAGTCACTCGCACAAAGCCTTCGGGACTTAACCCGGAATTTAA
TAACTCGCACAAATG
Found at i:24045854 original size:41 final size:41
Alignment explanation
Indices: 24045777--24045854 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
24045767 TTTGTATCTC
* * *
24045777 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
24045818 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
24045855 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:24053666 original size:40 final size:40
Alignment explanation
Indices: 24053568--24053910 Score: 485
Period size: 40 Copynumber: 8.6 Consensus size: 40
24053558 TCCTCGTTCA
* * * * *
24053568 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
24053607 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
24053647 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
24053687 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
24053727 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
24053767 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
24053807 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
24053847 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
24053887 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
24053911 CAGCATTCAA
Statistics
Matches: 280, Mismatches: 20, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
39 37 0.13
40 235 0.84
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:24057509 original size:19 final size:20
Alignment explanation
Indices: 24057477--24057519 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
24057467 GATTCAATTT
*
24057477 CAGATTTAGATTTAAATA-G
1 CAGATTCAGATTTAAATATG
* *
24057496 CAGATTCAGTTTTAGATATG
1 CAGATTCAGATTTAAATATG
24057516 CAGA
1 CAGA
24057520 ATCCTACCCC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (20 bp):
CAGATTCAGATTTAAATATG
Found at i:24058019 original size:21 final size:21
Alignment explanation
Indices: 24057989--24058037 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
24057979 CCCGTGTGGC
* *
24057989 CCACATGGCCTGGCCTAGAAT
1 CCACACGGCCTGGCCCAGAAT
24058010 CCACACGGCCTGGCCCAGAAT
1 CCACACGGCCTGGCCCAGAAT
24058031 CCACACG
1 CCACACG
24058038 CCCGTGTGAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.24, C:0.41, G:0.22, T:0.12
Consensus pattern (21 bp):
CCACACGGCCTGGCCCAGAAT
Found at i:24072879 original size:16 final size:18
Alignment explanation
Indices: 24072852--24072884 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
24072842 TATAATTGAG
24072852 TTGAGAAAATT-ATTTAA
1 TTGAGAAAATTAATTTAA
24072869 TTGAG-AAATTAATTTA
1 TTGAGAAAATTAATTTA
24072885 TTTAAATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.42
Consensus pattern (18 bp):
TTGAGAAAATTAATTTAA
Found at i:24075063 original size:17 final size:17
Alignment explanation
Indices: 24075015--24075063 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
24075005 AATTTAATTC
*
24075015 ATTTGTTTATTTCTTGTT
1 ATTTATTTATTT-TTGTT
**
24075033 ATTTATTTCCTTTTGTT
1 ATTTATTTATTTTTGTT
24075050 ATTTATTTATTTTT
1 ATTTATTTATTTTT
24075064 ATTCCTCTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
17 17 0.65
18 9 0.35
ACGTcount: A:0.14, C:0.06, G:0.06, T:0.73
Consensus pattern (17 bp):
ATTTATTTATTTTTGTT
Found at i:24075434 original size:14 final size:14
Alignment explanation
Indices: 24075415--24075447 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
24075405 CTAGAGATAC
24075415 GATTTTTAATTTTT
1 GATTTTTAATTTTT
24075429 GATTTTTAATTTTT
1 GATTTTTAATTTTT
24075443 -ATTTT
1 GATTTT
24075448 CTTTCATGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 5 0.26
14 14 0.74
ACGTcount: A:0.21, C:0.00, G:0.06, T:0.73
Consensus pattern (14 bp):
GATTTTTAATTTTT
Found at i:24078598 original size:75 final size:75
Alignment explanation
Indices: 24078494--24078669 Score: 212
Period size: 75 Copynumber: 2.3 Consensus size: 75
24078484 TGCTTTACAA
* * * *
24078494 GCTTTCCAAATAACTCACCACAAAGGCTTCCCAAACAATATACCACATAGGCT-CTTCAGATAAT
1 GCTTTACAGATAACTCACCACAAAGGCTTCCAAAACAATACACCACATAGGCTCCTT-AGATAAT
*
24078558 TCACTAAAAAG
65 TCACCAAAAAG
* * *
24078569 G-TATTACAGATAATTCACCACAAAGGCTTCCAAAACAATACGCCACATATGCTCCTTAGATAAT
1 GCT-TTACAGATAACTCACCACAAAGGCTTCCAAAACAATACACCACATAGGCTCCTTAGATAAT
*
24078633 TCACCACAAAG
65 TCACCAAAAAG
* * *
24078644 GCTTTACAGATATCTCGCCATAAAGG
1 GCTTTACAGATAACTCACCACAAAGG
24078670 TTTGGTTTGG
Statistics
Matches: 85, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
74 1 0.01
75 80 0.94
76 4 0.05
ACGTcount: A:0.39, C:0.27, G:0.11, T:0.23
Consensus pattern (75 bp):
GCTTTACAGATAACTCACCACAAAGGCTTCCAAAACAATACACCACATAGGCTCCTTAGATAATT
CACCAAAAAG
Found at i:24078654 original size:25 final size:25
Alignment explanation
Indices: 24078494--24078655 Score: 84
Period size: 25 Copynumber: 6.5 Consensus size: 25
24078484 TGCTTTACAA
* *
24078494 GCTTTCCAAATAACTCACCACAAAG
1 GCTTTCCAGATAATTCACCACAAAG
* * * *
24078519 GCTTCCCAAACAATAT-ACCACATAG
1 GCTTTCCAGATAAT-TCACCACAAAG
* *
24078544 GCTCTT-CAGATAATTCACTAAAAAG
1 GCT-TTCCAGATAATTCACCACAAAG
*
24078569 G-TATTACAGATAATTCACCACAAAG
1 GCT-TTCCAGATAATTCACCACAAAG
* * * * * *
24078594 GC-TTCCAAAACAATACGCCACATAT
1 GCTTTCC-AGATAATTCACCACAAAG
24078619 GC--TCCTTAGATAATTCACCACAAAG
1 GCTTTCC--AGATAATTCACCACAAAG
*
24078644 GCTTTACAGATA
1 GCTTTCCAGATA
24078656 TCTCGCCATA
Statistics
Matches: 100, Mismatches: 28, Indels: 18
0.68 0.19 0.12
Matches are distributed among these distances:
24 10 0.10
25 86 0.86
26 2 0.02
27 2 0.02
ACGTcount: A:0.40, C:0.27, G:0.10, T:0.23
Consensus pattern (25 bp):
GCTTTCCAGATAATTCACCACAAAG
Done.