Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 76 of 313
Found at i:25746083 original size:31 final size:33
Alignment explanation
Indices: 25746013--25746086 Score: 93
Period size: 31 Copynumber: 2.4 Consensus size: 33
25746003 TTAAAATCTA
*
25746013 ATTAAATA-AAAAAAACTTATAATAATATTTAT
1 ATTAAATATAAAAAAACTTATAATAATATTTAC
* *
25746045 ATT-AATATTAAAAAA-TTATATTAATA-TTAC
1 ATTAAATATAAAAAAACTTATAATAATATTTAC
25746075 ATTAAATATAAA
1 ATTAAATATAAA
25746087 TGTCATTAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
30 6 0.17
31 21 0.58
32 9 0.25
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (33 bp):
ATTAAATATAAAAAAACTTATAATAATATTTAC
Found at i:25746327 original size:28 final size:32
Alignment explanation
Indices: 25746252--25746330 Score: 78
Period size: 28 Copynumber: 2.6 Consensus size: 32
25746242 AATTTTAACT
*
25746252 AATTCATAAGAAAATTTATAAAAATATATATA
1 AATTCATAAAAAAATTTATAAAAATATATATA
* ** *
25746284 AATT-TTAAAATTATTT-T-AGAAT-TATA-A
1 AATTCATAAAAAAATTTATAAAAATATATATA
25746311 AATTCATAAAAAAATTTATA
1 AATTCATAAAAAAATTTATA
25746331 CAATTTTTAG
Statistics
Matches: 36, Mismatches: 8, Indels: 8
0.69 0.15 0.15
Matches are distributed among these distances:
27 5 0.14
28 13 0.36
29 5 0.14
30 1 0.03
31 8 0.22
32 4 0.11
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.39
Consensus pattern (32 bp):
AATTCATAAAAAAATTTATAAAAATATATATA
Found at i:25749423 original size:14 final size:14
Alignment explanation
Indices: 25749404--25749435 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
25749394 CTCCCAAAAG
*
25749404 CTCTGTCTTTTGTA
1 CTCTGTCTTTTATA
25749418 CTCTGTCTTTTATA
1 CTCTGTCTTTTATA
25749432 CTCT
1 CTCT
25749436 CCATATTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.09, C:0.25, G:0.09, T:0.56
Consensus pattern (14 bp):
CTCTGTCTTTTATA
Found at i:25750063 original size:17 final size:18
Alignment explanation
Indices: 25750031--25750064 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
25750021 TATTCTCCAT
*
25750031 TTTAATTTTCGTAATTTA
1 TTTAATTTTCGCAATTTA
25750049 TTTAA-TTTCGCAATTT
1 TTTAATTTTCGCAATTT
25750065 CAATACGACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.26, C:0.09, G:0.06, T:0.59
Consensus pattern (18 bp):
TTTAATTTTCGCAATTTA
Found at i:25753040 original size:21 final size:21
Alignment explanation
Indices: 25753014--25753062 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
25753004 TTTATTTTTC
* *
25753014 TTTATTATTTTATTTTAATTA
1 TTTATTATTTTATCTTAATGA
25753035 TTTATTATTTTATCTTAATGA
1 TTTATTATTTTATCTTAATGA
25753056 TTTATTA
1 TTTATTA
25753063 GTTAATTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (21 bp):
TTTATTATTTTATCTTAATGA
Found at i:25754813 original size:20 final size:20
Alignment explanation
Indices: 25754768--25754819 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 20
25754758 TAATTTTAGG
*
25754768 ATTTAATTTTATTTATATTT
1 ATTTATTTTTATTTATATTT
*
25754788 AATTATTTTTATTTAT-TTGT
1 ATTTATTTTTATTTATATT-T
25754808 ATTTATCTTTTA
1 ATTTAT-TTTTA
25754820 GAATTTAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 2 0.07
20 20 0.74
21 5 0.19
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (20 bp):
ATTTATTTTTATTTATATTT
Found at i:25755566 original size:17 final size:18
Alignment explanation
Indices: 25755538--25755571 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
25755528 TATTCTCCAT
25755538 TTTAATTTTCGCAATTTA
1 TTTAATTTTCGCAATTTA
25755556 TTTAA-TTTCGCAATTT
1 TTTAATTTTCGCAATTT
25755572 CAATATGACT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.26, C:0.12, G:0.06, T:0.56
Consensus pattern (18 bp):
TTTAATTTTCGCAATTTA
Found at i:25771517 original size:14 final size:14
Alignment explanation
Indices: 25771498--25771528 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
25771488 ATGGTTTTAG
25771498 TTTCTTTTTATAAT
1 TTTCTTTTTATAAT
*
25771512 TTTCTTTTTATCAT
1 TTTCTTTTTATAAT
25771526 TTT
1 TTT
25771529 ATTATTTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.16, C:0.10, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTCTTTTTATAAT
Found at i:25771905 original size:12 final size:12
Alignment explanation
Indices: 25771888--25771912 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
25771878 TGCATTTACA
25771888 TAGTATATGATG
1 TAGTATATGATG
25771900 TAGTATATGATG
1 TAGTATATGATG
25771912 T
1 T
25771913 GTTGCCATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.44
Consensus pattern (12 bp):
TAGTATATGATG
Found at i:25776617 original size:18 final size:18
Alignment explanation
Indices: 25776583--25776621 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
25776573 AAAAAGAAAG
*
25776583 AAACAAAAAGTGAAAAAA
1 AAACAAAAAGCGAAAAAA
25776601 AAACAAAAA-CGACAAAAA
1 AAACAAAAAGCGA-AAAAA
25776619 AAA
1 AAA
25776622 GATTGTGGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 2 0.11
18 17 0.89
ACGTcount: A:0.79, C:0.10, G:0.08, T:0.03
Consensus pattern (18 bp):
AAACAAAAAGCGAAAAAA
Found at i:25784827 original size:21 final size:21
Alignment explanation
Indices: 25784803--25784846 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
25784793 CATTTATGTC
*
25784803 TTATTTTGAGCAAATATTCTT
1 TTATCTTGAGCAAATATTCTT
*
25784824 TTATCTTGAGCAAATCTTCTT
1 TTATCTTGAGCAAATATTCTT
25784845 TT
1 TT
25784847 CTTGCATTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.25, C:0.14, G:0.09, T:0.52
Consensus pattern (21 bp):
TTATCTTGAGCAAATATTCTT
Found at i:25789731 original size:177 final size:177
Alignment explanation
Indices: 25789435--25790240 Score: 1254
Period size: 177 Copynumber: 4.5 Consensus size: 177
25789425 GATGTCGATA
*
25789435 AAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAGATGGTGAATCTTATCTCC
1 AAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAGATGGCGAATCTTATCTCC
* * *
25789500 ATATATCGGCTATGGAGCAGATTTTAGCCACTAGTCTTATCTCTCTGAGGTAGCAAGAGAGCAGG
66 ATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGG
*
25789565 TTGGAGATACAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTG
131 TTGAAGATACAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTG
* *
25789612 AAATTACAGATCTTATCTCCATGTATCGGCAATGGAGCAGATCGAAGATGGCGAATCTTATATCC
1 AAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAGATGGCGAATCTTATCTCC
* * *
25789677 ATGTATCGGCTATGAAGTAGATTTTAGCCACCAGCTTTATCTCTCTGAGGTAGCAAGAGAGCAGG
66 ATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGG
* * ** *
25789742 TTGAAGATACGAGTCTTACCTTCCTAAGGTAATAAGGAAGCAGATTG
131 TTGAAGATACAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTG
* *
25789789 AAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATTGAAGATGGCGAATCTTATCTTC
1 AAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAGATGGCGAATCTTATCTCC
* * * *
25789854 ATGTATTGGCTATGGAGTAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCAA-AGGAGAAG
66 ATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGA-GAGCAG
* * *
25789918 GTTAAAGATACAAGTCTTATCTTCCTGAGGTAGCAATGAAGCAGACTG
130 GTTGAAGATACAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTG
* * *
25789966 AAATTACAGATCTTATCTCCATGTATAGGCTATGGAGCAGATTGAAGATGGCGAATCTTATCTCT
1 AAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAGATGGCGAATCTTATCTCC
*
25790031 ATGTATCGACTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGG
66 ATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGG
* * *
25790096 TTGAAGGTACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAA
131 TTGAAGATACAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACT-G
* * *
25790144 AAATTACAGATCTTATCGCCATGTATCGGCTATGGAGCAGGTCGAAGATGGCGAGTCTTATCTCC
1 AAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAGATGGCGAATCTTATCTCC
** *
25790209 ATGTATCGATTATGGAGCAAATTTTAGCCACC
66 ATGTATCGGCTATGGAGCAGATTTTAGCCACC
25790241 TACTTTGTCT
Statistics
Matches: 574, Mismatches: 52, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
176 1 0.00
177 483 0.84
178 90 0.16
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.28
Consensus pattern (177 bp):
AAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAGATGGCGAATCTTATCTCC
ATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGG
TTGAAGATACAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTG
Found at i:25789828 original size:44 final size:45
Alignment explanation
Indices: 25789780--25790053 Score: 133
Period size: 44 Copynumber: 6.2 Consensus size: 45
25789770 GTAATAAGGA
*
25789780 AGCAGATTGAA-ATTAC-AGATCTTATCTCCATGTATCGGCTATGG
1 AGCAGATTGAAGATGACGA-ATCTTATCTCCATGTATCGGCTATGG
* * *
25789824 AGCAGATTGAAGATGGCGAATCTTATCTTCATGTATTGGCTATGG
1 AGCAGATTGAAGATGACGAATCTTATCTCCATGTATCGGCTATGG
* ** ** * ** * * *
25789869 AGTAGATTTTAG-CCACCAGCCTTATCTCTCTAAGGTA---GCAAAGG
1 AGCAGATTGAAGATGACGAATCTTATCTC-C--ATGTATCGGCTATGG
* * * * * *
25789913 AGAAGGTTAAAGAT-AC-AAGTCTTATCTTCC-TG-AGGT-AGCAATGA
1 AGCAGATTGAAGATGACGAA-TCTTATC-TCCATGTA--TCGGCTATGG
* * *
25789957 AGCAGACTGAA-ATTAC-AGATCTTATCTCCATGTATAGGCTATGG
1 AGCAGATTGAAGATGACGA-ATCTTATCTCCATGTATCGGCTATGG
* * *
25790001 AGCAGATTGAAGATGGCGAATCTTATCTCTATGTATCGACTATGG
1 AGCAGATTGAAGATGACGAATCTTATCTCCATGTATCGGCTATGG
25790046 AGCAGATT
1 AGCAGATT
25790054 TTAGCCACCA
Statistics
Matches: 171, Mismatches: 40, Indels: 37
0.69 0.16 0.15
Matches are distributed among these distances:
40 1 0.01
41 1 0.01
43 7 0.04
44 81 0.47
45 75 0.44
46 2 0.01
47 4 0.02
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.30
Consensus pattern (45 bp):
AGCAGATTGAAGATGACGAATCTTATCTCCATGTATCGGCTATGG
Found at i:25792674 original size:126 final size:127
Alignment explanation
Indices: 25792448--25792699 Score: 407
Period size: 126 Copynumber: 2.0 Consensus size: 127
25792438 AAAATTTTCG
* *
25792448 TCGCATGTTTTGGAAATCATGAGGTGATCTCAATTTTTGGAGGCTTAAAATATCGTGTCCTAACG
1 TCGCATGTTTTGGAAATCATGAGGTGATCTCAATTTTTGGAGGCTTAAAATATCGTATCCTAACA
* * * * *
25792513 TGCTGGATGTGGTATTTTATTCCTTTAGAACGAGTGAATCTTAAGATCCAACTTGAGTTGTT
66 TGATGGATGTAGTATTTTATTCCTTTAGAACGAGTGAATCCTAAAATCCAACTCGAGTTGTT
* *
25792575 TCGCATGTTTTGGAAATCATGAGGTGATCTCAGTTTTT-TAGGCTTAAAATATCGTATCCTAACA
1 TCGCATGTTTTGGAAATCATGAGGTGATCTCAATTTTTGGAGGCTTAAAATATCGTATCCTAACA
*
25792639 TGATGGATGTAGTATTTTATTCCTTTGGAACGAGTGAATCCTAAAATCCAACTCGAGTTGT
66 TGATGGATGTAGTATTTTATTCCTTTAGAACGAGTGAATCCTAAAATCCAACTCGAGTTGT
25792700 GCACACACTT
Statistics
Matches: 115, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
126 78 0.68
127 37 0.32
ACGTcount: A:0.27, C:0.15, G:0.21, T:0.37
Consensus pattern (127 bp):
TCGCATGTTTTGGAAATCATGAGGTGATCTCAATTTTTGGAGGCTTAAAATATCGTATCCTAACA
TGATGGATGTAGTATTTTATTCCTTTAGAACGAGTGAATCCTAAAATCCAACTCGAGTTGTT
Found at i:25793327 original size:88 final size:88
Alignment explanation
Indices: 25793053--25793719 Score: 928
Period size: 88 Copynumber: 7.7 Consensus size: 88
25793043 GTGAATCCAC
* *
25793053 GAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAGAAAA-TACAGATC---T-TCCCTAAACA
1 GAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCT-GAAAATTACAGATCTAATCTCCCTAAGCA
*
25793113 GTAGTGGAGCAGATCGAAGACAGT
65 GTAGTGGAGCAGATCGAAGACGGT
* **
25793137 AAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTCGAAAA-TACAGATC---TCT-CCTAAATA
1 GAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCT-GAAAATTACAGATCTAATCTCCCTAAGCA
**
25793197 GTAGTGGAGCAGATCGAAGACAAT
65 GTAGTGGAGCAGATCGAAGACGGT
* *
25793221 GAGCCTTAACCCCCTAAGCACTAGGGTAACAGGCTGAAAATTACAGATCTAATCTCCCTAAGTAG
1 GAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTAATCTCCCTAAGCAG
* **
25793286 TAGCGGAGCAGATAAAAGACGGT
66 TAGTGGAGCAGATCGAAGACGGT
* * * * * *
25793309 GCGCCTTAACCCCATAAGCAGTAGGGTAATAGGCTGGAAATTACAGATCTTATCTCCCTAAACAG
1 GAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTAATCTCCCTAAGCAG
* *
25793374 TAGCGGAGCAGATCAAAGACGGT
66 TAGTGGAGCAGATCGAAGACGGT
25793397 GAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCT-AGAAATTACAGATCTAATCTCCCTAAGCA
1 GAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGA-AAATTACAGATCTAATCTCCCTAAGCA
*
25793461 GTAGTGAAGCAGATCGAAGACGGT
65 GTAGTGGAGCAGATCGAAGACGGT
25793485 GAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCT-AGAAATTACAGATCTAATCTCCCTAAGCA
1 GAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGA-AAATTACAGATCTAATCTCCCTAAGCA
*
25793549 GTAGTGAAGCAGATCGAAGACGGT
65 GTAGTGGAGCAGATCGAAGACGGT
* *
25793573 GAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAG
1 GAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTAATCTCCCTAAGCAG
* * *
25793638 TAGCGAAGCAGCTCGAAGACGGT
66 TAGTGGAGCAGATCGAAGACGGT
* * *
25793661 GAGTCTTAACCCCCTAAGCAGTAGGGTAACAGG-TGAAAATTATAGATCTTATCTCCCTA
1 GAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTAATCTCCCTA
25793720 TCGAAGATGT
Statistics
Matches: 537, Mismatches: 38, Indels: 13
0.91 0.06 0.02
Matches are distributed among these distances:
83 5 0.01
84 118 0.22
85 1 0.00
87 27 0.05
88 386 0.72
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (88 bp):
GAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTAATCTCCCTAAGCAG
TAGTGGAGCAGATCGAAGACGGT
Found at i:25793532 original size:264 final size:262
Alignment explanation
Indices: 25793053--25794000 Score: 1137
Period size: 264 Copynumber: 3.7 Consensus size: 262
25793043 GTGAATCCAC
* *
25793053 GAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAGAAAATACAGATC---T-TCCCTAAACAG
1 GAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAGAAATTACAGATCTTATCTCCCTAAACAG
* * * *
25793114 TAGTGGAGCAGATCGAAGACAGTAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTCGAAAAT
66 TAGCGGAGCAGATCAAAGACAGTGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCT-GAAATT
* * *
25793179 ACAGATC---TCTCCTAAATAGTAGTGGAGCAGATCGAAGACAATGAGCCTTAACCCCCTAAGCA
130 ACAGATCTTATCTCCTAAACAGTAGTGAAGCAGATCGAAGACAGTGAGCCTTAACCCCCTAAGCA
* * * **
25793241 CTAGGGTAACAGGCT-GAAAATTACAGATCTAATCTCCCTAAGTAGTAGCGGAGCAGATAAAAGA
195 GTAGGGTAACAGGCTAG-AAATTACAGATCTAATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA
25793305 CGGT
259 CGGT
* * * *
25793309 GCGCCTTAACCCCATAAGCAGTAGGGTAATAGGCTGGAAATTACAGATCTTATCTCCCTAAACAG
1 GAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAGAAATTACAGATCTTATCTCCCTAAACAG
*
25793374 TAGCGGAGCAGATCAAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAGAAATT
66 TAGCGGAGCAGATCAAAGACAGTGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCT-GAAATT
* * *
25793439 ACAGATCTAATCTCCCTAAGCAGTAGTGAAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGC
130 ACAGATCTTATCT-CCTAAACAGTAGTGAAGCAGATCGAAGACAGTGAGCCTTAACCCCCTAAGC
*
25793504 AGTAGGGTAACAGGCTAGAAATTACAGATCTAATCTCCCTAAGCAGTAGTGAAGCAGATCGAAGA
194 AGTAGGGTAACAGGCTAGAAATTACAGATCTAATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA
25793569 CGGT
259 CGGT
* *
25793573 GAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAG
1 GAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAGAAATTACAGATCTTATCTCCCTAAACAG
* * * * *
25793638 TAGCGAAGCAGCTCGAAGACGGTGAGTCTTAACCCCCTAAGCAGTAGGGTAACAGG-TGAAAATT
66 TAGCGGAGCAGATCAAAGACAGTGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTG-AAATT
* * * *
25793702 ATAGATCTTATCTCC----C-----T-------ATCGAAGA-TGTAAGCCTTAACCTCCTAAGCA
130 ACAGATCTTATCTCCTAAACAGTAGTGAAGCAGATCGAAGACAGTGAGCCTTAACCCCCTAAGCA
* * * * * **
25793750 GTAGGGAAACAGGCTAAAAATTATAGATTTTATCTCCCTAAGCAGTAGTGGAGTGGATCGAAGAC
195 GTAGGGTAACAGGCTAGAAATTACAGATCTAATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAC
25793815 GGT
260 GGT
* * *
25793818 GAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTTATCTCCTTAAGCAG
1 GAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAGAAATTACAGATCTTATCTCCCTAAACAG
* * * * * *
25793883 TAGTGGAGCAGATTGAAA-ACAGTGAGTCTTAA-CCCCTAAGTAGT-GGTGTAATAGGTTGGAAA
66 TAGCGGAGCAGA-TCAAAGACAGTGAGCCTTAACCCCCTAAGCAGTAGG-GTAACAGGCT-GAAA
*
25793945 TTACAGATCTTATCTCCCTAAACAGTAG-CAGAGCAGATCGAAGACAGTGAGCCTTA
128 TTACAGATCTTATCT-CCTAAACAGTAGTGA-AGCAGATCGAAGACAGTGAGCCTTA
25794001 TCTCCCTGAA
Statistics
Matches: 601, Mismatches: 58, Indels: 59
0.84 0.08 0.08
Matches are distributed among these distances:
243 2 0.00
244 18 0.03
245 182 0.30
246 14 0.02
250 1 0.00
253 1 0.00
256 43 0.07
258 1 0.00
259 1 0.00
260 77 0.13
262 11 0.02
263 29 0.05
264 220 0.37
265 1 0.00
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.21
Consensus pattern (262 bp):
GAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAGAAATTACAGATCTTATCTCCCTAAACAG
TAGCGGAGCAGATCAAAGACAGTGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAATTA
CAGATCTTATCTCCTAAACAGTAGTGAAGCAGATCGAAGACAGTGAGCCTTAACCCCCTAAGCAG
TAGGGTAACAGGCTAGAAATTACAGATCTAATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACG
GT
Found at i:25793668 original size:44 final size:44
Alignment explanation
Indices: 25793364--25793686 Score: 190
Period size: 44 Copynumber: 7.3 Consensus size: 44
25793354 GATCTTATCT
* * * *
25793364 CCCTAAACAGTAGCGG-AGCAGATCAAAGACGGTGAGCCTTAACC
1 CCCTAAGCAGTAG-GGAAGCAGCTCGAAGACGGTGAGTCTTAACC
* * * *
25793408 CCCTAAGCAGTAGGGTAA-CAGGCTAGAA-A--TTACAGATC-TAATCT
1 CCCTAAGCAGTAGGG-AAGCA-GCTCGAAGACGGT-GAG-TCTTAA-CC
* * *
25793452 CCCTAAGCAGTAGTGAAGCAGATCGAAGACGGTGAGCCTTAACC
1 CCCTAAGCAGTAGGGAAGCAGCTCGAAGACGGTGAGTCTTAACC
* * * *
25793496 CCCTAAGCAGTAGGGTAA-CAGGCTAGAA-A--TTACAGATC-TAATCT
1 CCCTAAGCAGTAGGG-AAGCA-GCTCGAAGACGGT-GAG-TCTTAA-CC
* * *
25793540 CCCTAAGCAGTAGTGAAGCAGATCGAAGACGGTGAGCCTTAACC
1 CCCTAAGCAGTAGGGAAGCAGCTCGAAGACGGTGAGTCTTAACC
* * * * *
25793584 CCCTAAGCAGTAGGGTAA-CAGGCTGGAA-A--TTACAGATCTTATCT
1 CCCTAAGCAGTAGGG-AAGCA-GCTCGAAGACGGT-GAG-TCTTAACC
*
25793628 CCCTAAGCAGTAGCGAAGCAGCTCGAAGACGGTGAGTCTTAACC
1 CCCTAAGCAGTAGGGAAGCAGCTCGAAGACGGTGAGTCTTAACC
25793672 CCCTAAGCAGTAGGG
1 CCCTAAGCAGTAGGG
25793687 TAACAGGTGA
Statistics
Matches: 206, Mismatches: 44, Indels: 58
0.67 0.14 0.19
Matches are distributed among these distances:
42 3 0.01
43 36 0.17
44 133 0.65
45 31 0.15
46 3 0.01
ACGTcount: A:0.33, C:0.24, G:0.25, T:0.19
Consensus pattern (44 bp):
CCCTAAGCAGTAGGGAAGCAGCTCGAAGACGGTGAGTCTTAACC
Found at i:25793916 original size:245 final size:245
Alignment explanation
Indices: 25793486--25793964 Score: 728
Period size: 245 Copynumber: 2.0 Consensus size: 245
25793476 GAAGACGGTG
* *
25793486 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAGAAATTACAGATCTAATCTCCCTAAGCAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTAAAAATTACAGATCTAATCTCCCTAAGCAGT
**
25793551 AGTGAAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAATTA
66 AGTGAAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTA
* * *
25793616 CAGATCTTATCTCCCTAAGCAGTAGCGAAGCAGCTCGAAGACGGTGAGTCTTAACCCCCTAAGCA
131 CAGATCTTATCTCCCTAAGCAGTAGCGAAGCAGATCGAAAACAGTGAGTCTTAA-CCCCTAAGCA
*
25793681 GTAGG-GTAACAGG-TGAAAATTATAGATCTTATCTCCCTATCGAAGATGTA
195 GT-GGTGTAACAGGTTGAAAATTACAGATCTTATCTCCCTATCGAAGATGTA
* * * *
25793731 AGCCTTAACCTCCTAAGCAGTAGGGAAACAGGCTAAAAATTATAGATTTTATCTCCCTAAGCAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTAAAAATTACAGATCTAATCTCCCTAAGCAGT
* **
25793796 AGTGGAGTGGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTA
66 AGTGAAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTA
* * * * *
25793861 CAGATCTTATCTCCTTAAGCAGTAGTGGAGCAGATTGAAAACAGTGAGTCTTAACCCCTAAGTAG
131 CAGATCTTATCTCCCTAAGCAGTAGCGAAGCAGATCGAAAACAGTGAGTCTTAACCCCTAAGCAG
* *
25793926 TGGTGTAATAGGTTGGAAATTACAGATCTTATCTCCCTA
196 TGGTGTAACAGGTTGAAAATTACAGATCTTATCTCCCTA
25793965 AACAGTAGCA
Statistics
Matches: 210, Mismatches: 22, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
243 2 0.01
244 18 0.09
245 190 0.90
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.24
Consensus pattern (245 bp):
AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTAAAAATTACAGATCTAATCTCCCTAAGCAGT
AGTGAAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTA
CAGATCTTATCTCCCTAAGCAGTAGCGAAGCAGATCGAAAACAGTGAGTCTTAACCCCTAAGCAG
TGGTGTAACAGGTTGAAAATTACAGATCTTATCTCCCTATCGAAGATGTA
Found at i:25793971 original size:87 final size:88
Alignment explanation
Indices: 25793731--25794000 Score: 346
Period size: 88 Copynumber: 3.1 Consensus size: 88
25793721 CGAAGATGTA
* * * *
25793731 AGCCTTAACCTCCTAAGCAGTAGGGAAACAGGCTAAAAATTATAGATTTTATCTCCCTAAGCAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTTATCTCCCTAAGCAGT
** *
25793796 AGTGGAGTGGATCGAAGACGGTG
66 AGTGGAGCAGATCGAAGACAGTG
*
25793819 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTTATCTCCTTAAGCAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTTATCTCCCTAAGCAGT
* *
25793884 AGTGGAGCAGATTGAAAACAGTG
66 AGTGGAGCAGATCGAAGACAGTG
* * * * ** *
25793907 AGTCTTAA-CCCCTAAGTAGT-GGTGTAATAGGTTGGAAATTACAGATCTTATCTCCCTAAACAG
1 AGCCTTAACCCCCTAAGCAGTAGG-GTAACAGGCTAAAAATTACAGATCTTATCTCCCTAAGCAG
**
25793970 TAGCAGAGCAGATCGAAGACAGTG
65 TAGTGGAGCAGATCGAAGACAGTG
25793994 AGCCTTA
1 AGCCTTA
25794001 TCTCCCTGAA
Statistics
Matches: 158, Mismatches: 23, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
86 2 0.01
87 71 0.45
88 85 0.54
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (88 bp):
AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTTATCTCCCTAAGCAGT
AGTGGAGCAGATCGAAGACAGTG
Found at i:25795350 original size:14 final size:14
Alignment explanation
Indices: 25795331--25795361 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
25795321 ATGGTTTTAA
*
25795331 TTTCTTTTTATTAT
1 TTTCTTTTTATCAT
25795345 TTTCTTTTTATCAT
1 TTTCTTTTTATCAT
25795359 TTT
1 TTT
25795362 GTTATTTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.10, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTCTTTTTATCAT
Found at i:25799830 original size:5 final size:5
Alignment explanation
Indices: 25799820--25799851 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
25799810 TTGTGTGTTC
25799820 TTTAT TTTAT TTTA- TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
25799852 TCACAAATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:25799839 original size:14 final size:14
Alignment explanation
Indices: 25799820--25799850 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
25799810 TTGTGTGTTC
25799820 TTTATTTTATTTTA
1 TTTATTTTATTTTA
25799834 TTTATTTTATTTTA
1 TTTATTTTATTTTA
25799848 TTT
1 TTT
25799851 TTCACAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTATTTTATTTTA
Found at i:25804283 original size:5 final size:5
Alignment explanation
Indices: 25804273--25804320 Score: 96
Period size: 5 Copynumber: 9.6 Consensus size: 5
25804263 TTGTGTGTTC
25804273 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
25804321 TCACATAGGT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 43 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:25806582 original size:18 final size:20
Alignment explanation
Indices: 25806555--25806594 Score: 66
Period size: 18 Copynumber: 2.1 Consensus size: 20
25806545 TTAAAACTGG
25806555 AGAAATAGATAAATGA-AAT
1 AGAAATAGATAAATGATAAT
25806574 AGAAA-AGATAAATGATAAT
1 AGAAATAGATAAATGATAAT
25806593 AG
1 AG
25806595 GGGTATAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.62, C:0.00, G:0.17, T:0.20
Consensus pattern (20 bp):
AGAAATAGATAAATGATAAT
Found at i:25808472 original size:28 final size:28
Alignment explanation
Indices: 25808435--25808513 Score: 113
Period size: 28 Copynumber: 2.8 Consensus size: 28
25808425 GCAATCAAAT
* *
25808435 ATGGTACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
25808463 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
25808491 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
25808514 CGAATGATTC
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.34, C:0.10, G:0.25, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:25810574 original size:57 final size:57
Alignment explanation
Indices: 25810486--25810843 Score: 662
Period size: 57 Copynumber: 6.2 Consensus size: 57
25810476 AAGTGAACAT
*
25810486 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTACGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
25810543 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
25810600 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
25810657 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
25810714 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* *
25810771 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
*
25810828 GGGCACTAAGTGTGTG
1 AGGCACT--GTGTGTG
25810844 AAATGAGATC
Statistics
Matches: 295, Mismatches: 4, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
57 288 0.98
59 7 0.02
ACGTcount: A:0.17, C:0.19, G:0.36, T:0.28
Consensus pattern (57 bp):
AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
Found at i:25815861 original size:28 final size:28
Alignment explanation
Indices: 25815800--25815865 Score: 87
Period size: 28 Copynumber: 2.4 Consensus size: 28
25815790 TCAGTGTACG
**
25815800 AAATATTGAAAATGACACTTAATGTGCG
1 AAATATTGAAAATGACACTTAATGTGAA
* * *
25815828 AGATATTGAGAATGACACTTAGTGTGAA
1 AAATATTGAAAATGACACTTAATGTGAA
25815856 AAATATTGAA
1 AAATATTGAA
25815866 TGATTAAATA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.44, C:0.08, G:0.20, T:0.29
Consensus pattern (28 bp):
AAATATTGAAAATGACACTTAATGTGAA
Found at i:25815980 original size:39 final size:39
Alignment explanation
Indices: 25815936--25816627 Score: 1323
Period size: 39 Copynumber: 17.7 Consensus size: 39
25815926 CGATTTTATA
25815936 CTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
1 CTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
25815975 CTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
1 CTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
25816014 CTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
1 CTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
25816053 CTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
1 CTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
25816092 CTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
1 CTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
25816131 CTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
1 CTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
25816170 CTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
1 CTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
25816209 CTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
1 CTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
25816248 CTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
1 CTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
25816287 CTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
1 CTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
25816326 CTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
1 CTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
25816365 CTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
1 CTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
25816404 CTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
1 CTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
25816443 CTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
1 CTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
25816482 CTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
1 CTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
25816521 CTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
1 CTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
* *
25816560 CTGGTGTTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTG
1 CTGGTGTTATATCCGGGCT-AAGTCCCGAAGGCATTCGTG
*
25816599 CTGGTATTATATCCGGGCTTAAAGTCCCG
1 CTGGTGTTATATCCGGGC-T-AAGTCCCG
25816628 CATGCTTTGT
Statistics
Matches: 648, Mismatches: 3, Indels: 3
0.99 0.00 0.00
Matches are distributed among these distances:
39 626 0.97
40 22 0.03
ACGTcount: A:0.18, C:0.23, G:0.30, T:0.28
Consensus pattern (39 bp):
CTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
Found at i:25822597 original size:20 final size:20
Alignment explanation
Indices: 25822560--25822597 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
25822550 TAATTAAAAG
*
25822560 TTTTGTTCTTTCAAATATGC
1 TTTTGTTCTTTAAAATATGC
25822580 TTTTGTT-TTTAAATATAT
1 TTTTGTTCTTTAAA-ATAT
25822598 TTAAGATTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.24, C:0.08, G:0.08, T:0.61
Consensus pattern (20 bp):
TTTTGTTCTTTAAAATATGC
Found at i:25824939 original size:20 final size:19
Alignment explanation
Indices: 25824912--25824952 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 19
25824902 TTAATATCAC
25824912 TTTATTTATAGT-TATATAT
1 TTTATTTATA-TCTATATAT
25824931 TTTATTTTATATCTATATAT
1 TTTA-TTTATATCTATATAT
25824951 TT
1 TT
25824953 AAATATCACA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.66
Consensus pattern (19 bp):
TTTATTTATATCTATATAT
Found at i:25838151 original size:18 final size:18
Alignment explanation
Indices: 25838130--25838165 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
25838120 TACTTAATAA
25838130 GACTTGAAAACCTAATTT
1 GACTTGAAAACCTAATTT
25838148 GACTTGAAAACCTAATTT
1 GACTTGAAAACCTAATTT
25838166 CACCCACTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33
Consensus pattern (18 bp):
GACTTGAAAACCTAATTT
Found at i:25841494 original size:14 final size:13
Alignment explanation
Indices: 25841432--25841533 Score: 59
Period size: 14 Copynumber: 7.2 Consensus size: 13
25841422 TTGCTATTAT
25841432 TTTTATGTT-TCTA
1 TTTTAT-TTATCTA
25841445 TTTATATTTAT-T-
1 TTT-TATTTATCTA
25841457 TTGTTATTCTAATACTA
1 TT-TTATT-T-AT-CTA
25841474 TTATTATTTATCTAA
1 TT-TTATTTATCT-A
25841489 TTTTATTTATCTA
1 TTTTATTTATCTA
*
25841502 TTTATATTTCTACTA
1 TTT-TATTTAT-CTA
25841517 TTATTATATT-TCTA
1 TT-TTAT-TTATCTA
25841531 TTT
1 TTT
25841534 ATTATATTTT
Statistics
Matches: 74, Mismatches: 2, Indels: 26
0.73 0.02 0.25
Matches are distributed among these distances:
12 6 0.08
13 13 0.18
14 29 0.39
15 14 0.19
16 5 0.07
17 7 0.09
ACGTcount: A:0.25, C:0.08, G:0.02, T:0.65
Consensus pattern (13 bp):
TTTTATTTATCTA
Found at i:25841506 original size:29 final size:30
Alignment explanation
Indices: 25841429--25841538 Score: 79
Period size: 29 Copynumber: 3.8 Consensus size: 30
25841419 TTATTGCTAT
* * **
25841429 TATTTTTATGTTTCTATTTA-TATTTATTT
1 TATTATTATATTTCTATTTATTATTTATAC
* * * *
25841458 TGTTATTCTAATACTA-TTATTATTTAT-C
1 TATTATTATATTTCTATTTATTATTTATAC
*
25841486 TAATT-TTAT-TTATCTATTTA-TATTTCTAC
1 T-ATTATTATATT-TCTATTTATTATTTATAC
25841515 TATTATTATATTTCTATTTATTAT
1 TATTATTATATTTCTATTTATTAT
25841539 ATTTTTATTT
Statistics
Matches: 61, Mismatches: 12, Indels: 15
0.69 0.14 0.17
Matches are distributed among these distances:
27 1 0.02
28 19 0.31
29 36 0.59
30 5 0.08
ACGTcount: A:0.26, C:0.07, G:0.02, T:0.65
Consensus pattern (30 bp):
TATTATTATATTTCTATTTATTATTTATAC
Found at i:25841535 original size:15 final size:15
Alignment explanation
Indices: 25841503--25841548 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
25841493 ATTTATCTAT
25841503 TTATATTTCTACTATTA
1 TTATATTTCTA-T-TTA
25841520 TTATATTTCTATTTA
1 TTATATTTCTATTTA
*
25841535 TTATATTTTTATTT
1 TTATATTTCTATTT
25841549 CTATTTATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (15 bp):
TTATATTTCTATTTA
Found at i:25845026 original size:4 final size:4
Alignment explanation
Indices: 25845017--25845103 Score: 165
Period size: 4 Copynumber: 21.8 Consensus size: 4
25845007 TTACTACTAA
*
25845017 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATT TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
25845065 TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
25845104 TTTTTTTAAG
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
4 81 1.00
ACGTcount: A:0.25, C:0.00, G:0.23, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:25846139 original size:6 final size:6
Alignment explanation
Indices: 25846108--25846176 Score: 97
Period size: 6 Copynumber: 11.5 Consensus size: 6
25846098 ATAAGTCTTC
*
25846108 AAAAAT AAATAAG AGAAAAT -AAAAT AAAAAT AAAAAT AAAAAT AAAAAT
1 AAAAAT AAA-AAT A-AAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
25846157 AAAAAT AAAAAT -AAAAT AAA
1 AAAAAT AAAAAT AAAAAT AAA
25846177 GGGACTCAAA
Statistics
Matches: 57, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
5 10 0.18
6 40 0.70
7 5 0.09
8 2 0.04
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:25846371 original size:6 final size:6
Alignment explanation
Indices: 25846363--25846392 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
25846353 GTGACGCGGT
*
25846363 GGTGGT GGTGGG GGTGGG GGTGGG GGTGGG
1 GGTGGG GGTGGG GGTGGG GGTGGG GGTGGG
25846393 TCCTCGTGAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.80, T:0.20
Consensus pattern (6 bp):
GGTGGG
Found at i:25850325 original size:29 final size:29
Alignment explanation
Indices: 25850283--25850357 Score: 123
Period size: 29 Copynumber: 2.6 Consensus size: 29
25850273 GTTATACTGA
*
25850283 TTTGACTTTGGGCCATGCATATCAAATGT
1 TTTGGCTTTGGGCCATGCATATCAAATGT
*
25850312 TTTGGCTTTGGGCCATGCATATCAGATGT
1 TTTGGCTTTGGGCCATGCATATCAAATGT
*
25850341 TTTGGCTTCGGGCCATG
1 TTTGGCTTTGGGCCATG
25850358 AAAATATTTC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.17, C:0.19, G:0.27, T:0.37
Consensus pattern (29 bp):
TTTGGCTTTGGGCCATGCATATCAAATGT
Found at i:25852750 original size:33 final size:33
Alignment explanation
Indices: 25852703--25852774 Score: 119
Period size: 33 Copynumber: 2.2 Consensus size: 33
25852693 ATTATTAAAT
* *
25852703 AAAT-TAAATGGTAGATAATTGTGTGGTAATAA
1 AAATATAAATAGTAGATAATTGTATGGTAATAA
25852735 AAATATAAATAGTAGATAATTGTATGGTAATAA
1 AAATATAAATAGTAGATAATTGTATGGTAATAA
25852768 AAATATA
1 AAATATA
25852775 CATGTGTAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
32 4 0.11
33 33 0.89
ACGTcount: A:0.50, C:0.00, G:0.17, T:0.33
Consensus pattern (33 bp):
AAATATAAATAGTAGATAATTGTATGGTAATAA
Found at i:25858136 original size:21 final size:22
Alignment explanation
Indices: 25858090--25858130 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
25858080 TAGTCCTCTA
*
25858090 ATCAATTCTAATCAATGATTCT
1 ATCAATTCTAATCAATAATTCT
*
25858112 ATCAATT-TAATCCATAATT
1 ATCAATTCTAATCAATAATT
25858131 TCATCATTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.39, C:0.17, G:0.02, T:0.41
Consensus pattern (22 bp):
ATCAATTCTAATCAATAATTCT
Found at i:25860341 original size:38 final size:40
Alignment explanation
Indices: 25860299--25860376 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
25860289 ACCTGCGTAC
*
25860299 CTGGAAAAAA-ATAA-AAAAACAGAATTAAAAGTTTTGAT
1 CTGGAAAAAATAAAATAAAAACAGAATTAAAAGTTTTGAT
25860337 CTGGAAAAAATAAAATAAAAACAGAATTAAAAGTTTTGAT
1 CTGGAAAAAATAAAATAAAAACAGAATTAAAAGTTTTGAT
25860377 TGAAATTCCG
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
38 10 0.27
39 3 0.08
40 24 0.65
ACGTcount: A:0.58, C:0.05, G:0.13, T:0.24
Consensus pattern (40 bp):
CTGGAAAAAATAAAATAAAAACAGAATTAAAAGTTTTGAT
Found at i:25861140 original size:10 final size:10
Alignment explanation
Indices: 25861098--25861132 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
25861088 TTAAATTCTA
25861098 AAAGATAAAT
1 AAAGATAAAT
*
25861108 ACAGATAAAT
1 AAAGATAAAT
*
25861118 AAAGATAATT
1 AAAGATAAAT
25861128 AAAGA
1 AAAGA
25861133 AAGATAAAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.66, C:0.03, G:0.11, T:0.20
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:25862072 original size:12 final size:12
Alignment explanation
Indices: 25862055--25862088 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
25862045 AAGGACGCAA
*
25862055 ATTATTATTATC
1 ATTATTATTACC
*
25862067 ATTATTACTACC
1 ATTATTATTACC
25862079 ATTATTATTA
1 ATTATTATTA
25862089 AATGTTATTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.35, C:0.12, G:0.00, T:0.53
Consensus pattern (12 bp):
ATTATTATTACC
Found at i:25862614 original size:150 final size:150
Alignment explanation
Indices: 25862419--25862708 Score: 433
Period size: 150 Copynumber: 1.9 Consensus size: 150
25862409 AAAGTTTTGA
* *
25862419 TTTTTTTTAAAGAGAAATTTTAGATTTTAAAAATAAAAATATGTTTTTTTAGTCATTTCAAAGGA
1 TTTTTTTTAAAGAGAAAGTTTAGATTTTAAAAATAAAAATATGTTTTTTTACTCATTTCAAAGGA
* * *
25862484 AAG-TTT-AAATTTTT-AAATAAAGTTTTGATTTTTTTTAACTATCTCAAAATAAAAGCTTTGAT
66 AAGTTTTAAAATTTTTAAAAGAAAGTTTTGATCTTTTTCAACTATCTCAAAAT-AAAGCTTTGAT
25862546 TTTTAAGAAAAATAGTGATTCT
130 TTTTAA-AAAAATAGTGATTCT
* * *
25862568 TTTTTTTTAAAGGAGAAAGTTTAGATTTTTAAAATAAAAATTTGTTTTTTTACTCATTTTAAAGG
1 TTTTTTTTAAA-GAGAAAGTTTAGATTTTAAAAATAAAAATATGTTTTTTTACTCATTTCAAAGG
* * *
25862633 AAAGTTTTAAAATTTTTAAAAGAAAGTTTTGATCTTTTTCAACTATTTTAAAATAAAGTTTTGAT
65 AAAGTTTTAAAATTTTTAAAAGAAAGTTTTGATCTTTTTCAACTATCTCAAAATAAAGCTTTGAT
25862698 TTTTAAAAAAA
130 TTTTAAAAAAA
25862709 GTTCTGATTT
Statistics
Matches: 126, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
149 11 0.09
150 52 0.41
151 8 0.06
152 24 0.19
153 31 0.25
ACGTcount: A:0.40, C:0.04, G:0.10, T:0.46
Consensus pattern (150 bp):
TTTTTTTTAAAGAGAAAGTTTAGATTTTAAAAATAAAAATATGTTTTTTTACTCATTTCAAAGGA
AAGTTTTAAAATTTTTAAAAGAAAGTTTTGATCTTTTTCAACTATCTCAAAATAAAGCTTTGATT
TTTAAAAAAATAGTGATTCT
Found at i:25862633 original size:52 final size:51
Alignment explanation
Indices: 25862423--25862723 Score: 182
Period size: 52 Copynumber: 5.9 Consensus size: 51
25862413 TTTTGATTTT
* * * *
25862423 TTTTAAAGAGAAATTTTAGATTTTAAAAATAAAAATATG-TTTTTTTAGTCA
1 TTTTAAAGAGAAAGTTTAGATTTTTAAAATAAAAATTTGATTTTTTTACT-A
* * **
25862474 TTTCAAAG-GAAAGTTTAAATTTTT-AAATAAAGTTTTGATTTTTTTTAACTA
1 TTTTAAAGAGAAAGTTTAGATTTTTAAAATAAAAATTTGA-TTTTTTT-ACTA
* * * * * *
25862525 TCTCAAA-ATAAAAGCTTT-GATTTTT--AAGAAAAATAGTGATTCTTTT--T-
1 TTTTAAAGA-GAAAG-TTTAGATTTTTAAAATAAAAAT-TTGATTTTTTTACTA
25862572 TTTTAAAGGAGAAAGTTTAGATTTTTAAAATAAAAATTTG-TTTTTTTACTCA
1 TTTTAAA-GAGAAAGTTTAGATTTTTAAAATAAAAATTTGATTTTTTTACT-A
* * ** *
25862624 TTTTAAAG-GAAAGTTTTAAAATTTTTAAAAGAAAGTTTTGATCTTTTTCAACTA
1 TTTTAAAGAGAAAG-TTT-AGATTTTTAAAATAAAAATTTGAT-TTTTT-TACTA
* * *
25862678 TTTTAAA-ATAAAGTTTTGATTTTT-AAA-AAAAGTTCTGATTTTTTTA
1 TTTTAAAGAGAAAGTTTAGATTTTTAAAATAAAAATT-TGATTTTTTTA
25862724 AAGAAAATTT
Statistics
Matches: 194, Mismatches: 33, Indels: 48
0.71 0.12 0.17
Matches are distributed among these distances:
47 8 0.04
48 18 0.09
49 14 0.07
50 37 0.19
51 44 0.23
52 46 0.24
53 7 0.04
54 17 0.09
55 3 0.02
ACGTcount: A:0.39, C:0.04, G:0.10, T:0.47
Consensus pattern (51 bp):
TTTTAAAGAGAAAGTTTAGATTTTTAAAATAAAAATTTGATTTTTTTACTA
Found at i:25862721 original size:20 final size:20
Alignment explanation
Indices: 25862678--25862720 Score: 70
Period size: 19 Copynumber: 2.2 Consensus size: 20
25862668 TTTTCAACTA
*
25862678 TTTTAAAATAAAGTTTTGAT
1 TTTTAAAATAAAGTTCTGAT
25862698 TTTTAAAA-AAAGTTCTGAT
1 TTTTAAAATAAAGTTCTGAT
25862717 TTTT
1 TTTT
25862721 TTAAAGAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.37, C:0.02, G:0.09, T:0.51
Consensus pattern (20 bp):
TTTTAAAATAAAGTTCTGAT
Found at i:25862739 original size:21 final size:21
Alignment explanation
Indices: 25862697--25862755 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 21
25862687 AAAGTTTTGA
*
25862697 TTTTTAAA-AAAAGTTCTGATT
1 TTTTTAAAGAAAA-TTCTAATT
*
25862718 TTTTTAAAGAAAATTTTAATT
1 TTTTTAAAGAAAATTCTAATT
**
25862739 TTGTAAAAAGAAAATTC
1 TT-TTTAAAGAAAATTC
25862756 GACCACCGTA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
21 16 0.52
22 15 0.48
ACGTcount: A:0.44, C:0.03, G:0.08, T:0.44
Consensus pattern (21 bp):
TTTTTAAAGAAAATTCTAATT
Found at i:25868969 original size:50 final size:50
Alignment explanation
Indices: 25868894--25869070 Score: 257
Period size: 50 Copynumber: 3.5 Consensus size: 50
25868884 CCATGGAAAC
25868894 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * * *
25868944 AAGTGATAAGTAATAACTTCGGCTACACTTATCTGATTAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
25868994 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGG-CAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAA-GGACAAATGA
* * * *
25869044 CAACTGAAAAGTGGTAGCTTCAGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
25869071 CTGATCAGTG
Statistics
Matches: 113, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
50 89 0.79
51 24 0.21
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:25869256 original size:31 final size:31
Alignment explanation
Indices: 25869048--25869249 Score: 296
Period size: 31 Copynumber: 6.5 Consensus size: 31
25869038 AAATGACAAC
25869048 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
25869079 TGAAAAGTGGTAGTTTCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* *
25869110 TGAAAAGTGGTAGCTTCTGCTACCTAATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* *
25869141 TGAAAAGTGGTAGCTTCGGCTACCTGACCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* * *
25869172 TAAAAAGTGGTAGCTCCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* **
25869203 TGAAAAATGGTAGCACCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
25869234 TGAATAGTGGTAGCTT
1 TGAAAAGTGGTAGCTT
25869250 TGGCTACAAG
Statistics
Matches: 153, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 153 1.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (31 bp):
TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
Found at i:25869343 original size:47 final size:48
Alignment explanation
Indices: 25869287--25869412 Score: 166
Period size: 47 Copynumber: 2.7 Consensus size: 48
25869277 TTAGTGATTT
* *
25869287 CTGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATG-CTA
1 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
* * *
25869334 CTGTATAAGACCATATCTGGGATATGACATCAGTGAGATATGTGATTA
1 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
* * *
25869382 C-GTGTAAGACCATAGCTGGGCTATGGCATCA
1 CTGTATAAGACCATATCTGGGATATGGCATCA
25869413 TTATGTAAAG
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
47 66 0.96
48 3 0.04
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (48 bp):
CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
Found at i:25887973 original size:25 final size:28
Alignment explanation
Indices: 25887923--25887974 Score: 74
Period size: 25 Copynumber: 2.0 Consensus size: 28
25887913 CAATATTTTT
*
25887923 GTATGAAAATTGATATGATAGGAAAATC
1 GTATGAAAATTGATATGATAGAAAAATC
25887951 GTATGAAAA-T-AT-TGATAGAAAAAT
1 GTATGAAAATTGATATGATAGAAAAAT
25887975 TTTACCAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 11 0.48
26 2 0.09
27 1 0.04
28 9 0.39
ACGTcount: A:0.50, C:0.02, G:0.19, T:0.29
Consensus pattern (28 bp):
GTATGAAAATTGATATGATAGAAAAATC
Found at i:25890074 original size:14 final size:14
Alignment explanation
Indices: 25890051--25890080 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
25890041 TTGAAAATAT
25890051 GTTGAATTGGATTG
1 GTTGAATTGGATTG
*
25890065 GTTGATTTGGATTG
1 GTTGAATTGGATTG
25890079 GT
1 GT
25890081 CTCGATATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.47
Consensus pattern (14 bp):
GTTGAATTGGATTG
Found at i:25895128 original size:15 final size:15
Alignment explanation
Indices: 25895105--25895137 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
25895095 CAGATCAGTT
25895105 AGTACTCTCAAAACA
1 AGTACTCTCAAAACA
*
25895120 AGTATTCTCAAAACA
1 AGTACTCTCAAAACA
25895135 AGT
1 AGT
25895138 TAACCTTCAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.45, C:0.21, G:0.09, T:0.24
Consensus pattern (15 bp):
AGTACTCTCAAAACA
Found at i:25900442 original size:55 final size:54
Alignment explanation
Indices: 25900383--25900489 Score: 196
Period size: 55 Copynumber: 2.0 Consensus size: 54
25900373 GAAAATGATT
*
25900383 ACCTTTCCTATTTTCCTTATCTTCATTCCTTTCATATAAAAAAAAAACAACACCC
1 ACCTTTCCTATTGTCCTTATCTTCATTCCTTTCATAT-AAAAAAAAACAACACCC
25900438 ACCTTTCCTATTGTCCTTATCTTCATTCCTTTCATATAAAAAAAAACAACAC
1 ACCTTTCCTATTGTCCTTATCTTCATTCCTTTCATATAAAAAAAAACAACAC
25900490 TCAAAATTGA
Statistics
Matches: 51, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
54 15 0.29
55 36 0.71
ACGTcount: A:0.35, C:0.28, G:0.01, T:0.36
Consensus pattern (54 bp):
ACCTTTCCTATTGTCCTTATCTTCATTCCTTTCATATAAAAAAAAACAACACCC
Found at i:25901648 original size:13 final size:12
Alignment explanation
Indices: 25901629--25901680 Score: 61
Period size: 13 Copynumber: 4.2 Consensus size: 12
25901619 ATATTTATAT
25901629 TTATTAAAATTA
1 TTATTAAAATTA
25901641 TTACTTAAAATTTA
1 TTA-TTAAAA-TTA
25901655 TTATTAAAA-TA
1 TTATTAAAATTA
**
25901666 AAATTAAAATTA
1 TTATTAAAATTA
25901678 TTA
1 TTA
25901681 AAATATTATA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
11 9 0.27
12 6 0.18
13 12 0.36
14 6 0.18
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (12 bp):
TTATTAAAATTA
Found at i:25901784 original size:13 final size:12
Alignment explanation
Indices: 25901746--25901781 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 12
25901736 TTTTAATTTT
25901746 ATTTTAATAATAA
1 ATTTTAATAAT-A
25901759 ATTTTAAGTAATA
1 ATTTTAA-TAATA
25901772 ATTTTAATAA
1 ATTTTAATAA
25901782 ATATAAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 3 0.14
13 15 0.68
14 4 0.18
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (12 bp):
ATTTTAATAATA
Found at i:25902136 original size:21 final size:21
Alignment explanation
Indices: 25902098--25902137 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
25902088 TAAATTTAAC
* * *
25902098 AAAATATTTTTAATATATACA
1 AAAATATATATAAAATATACA
25902119 AAAATATATATAAAATATA
1 AAAATATATATAAAATATA
25902138 AATTTATAGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (21 bp):
AAAATATATATAAAATATACA
Found at i:25902374 original size:13 final size:14
Alignment explanation
Indices: 25902312--25902371 Score: 86
Period size: 14 Copynumber: 4.4 Consensus size: 14
25902302 AAAATAAGTT
* *
25902312 ATTTTTCAGAAATT
1 ATTTTTCAAAAATC
25902326 ATTTTTCAAAAATC
1 ATTTTTCAAAAATC
*
25902340 A-TTTTCAATAATC
1 ATTTTTCAAAAATC
25902353 ATTTTTCAAAAATC
1 ATTTTTCAAAAATC
25902367 ATTTT
1 ATTTT
25902372 CAATGAAACA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
13 12 0.29
14 29 0.71
ACGTcount: A:0.38, C:0.12, G:0.02, T:0.48
Consensus pattern (14 bp):
ATTTTTCAAAAATC
Found at i:25903564 original size:23 final size:23
Alignment explanation
Indices: 25903535--25903587 Score: 106
Period size: 23 Copynumber: 2.3 Consensus size: 23
25903525 ACATATGTAT
25903535 TAATAAATATTATAATAGTTTAA
1 TAATAAATATTATAATAGTTTAA
25903558 TAATAAATATTATAATAGTTTAA
1 TAATAAATATTATAATAGTTTAA
25903581 TAATAAA
1 TAATAAA
25903588 AAAAAGAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.42
Consensus pattern (23 bp):
TAATAAATATTATAATAGTTTAA
Found at i:25903620 original size:9 final size:9
Alignment explanation
Indices: 25903594--25903628 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
25903584 TAAAAAAAAG
25903594 AAATGAAAT
1 AAATGAAAT
25903603 AAA-GAAAT
1 AAATGAAAT
25903611 AAATGAAAT
1 AAATGAAAT
*
25903620 AAAAGAAAT
1 AAATGAAAT
25903629 GAAAAAGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
8 8 0.33
9 16 0.67
ACGTcount: A:0.71, C:0.00, G:0.11, T:0.17
Consensus pattern (9 bp):
AAATGAAAT
Found at i:25903624 original size:18 final size:18
Alignment explanation
Indices: 25903582--25903628 Score: 69
Period size: 17 Copynumber: 2.7 Consensus size: 18
25903572 ATAGTTTAAT
* *
25903582 AATAAAAAAAAGAAATGA
1 AATAAAAGAAATAAATGA
25903600 AAT-AAAGAAATAAATGA
1 AATAAAAGAAATAAATGA
25903617 AATAAAAGAAAT
1 AATAAAAGAAAT
25903629 GAAAAAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 15 0.58
18 11 0.42
ACGTcount: A:0.74, C:0.00, G:0.11, T:0.15
Consensus pattern (18 bp):
AATAAAAGAAATAAATGA
Found at i:25905014 original size:5 final size:5
Alignment explanation
Indices: 25904999--25905040 Score: 57
Period size: 5 Copynumber: 8.2 Consensus size: 5
25904989 AGTGGAAAGG
* *
25904999 TGAATT TGAAT TGAAT TGAAT TGAAT TGAAT GGAAT GGAAT T
1 TGAA-T TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT T
25905041 ATGATTAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
5 30 0.88
6 4 0.12
ACGTcount: A:0.38, C:0.00, G:0.24, T:0.38
Consensus pattern (5 bp):
TGAAT
Found at i:25905514 original size:45 final size:45
Alignment explanation
Indices: 25905449--25905733 Score: 428
Period size: 45 Copynumber: 6.3 Consensus size: 45
25905439 CTGTTACTGC
* * * *
25905449 TACTGCTACTGTTACTGATTCGGCACTTTGTGTGTCGAATATTGT
1 TACTGTTACCGTTACCGATTCGACACTTTGTGTGTCGAATATTGT
* *
25905494 TACTGCTACTGTTACCGATTCGACACTTTGTGTGTCGAATATTGT
1 TACTGTTACCGTTACCGATTCGACACTTTGTGTGTCGAATATTGT
*
25905539 TACTGCTACCGTTACCGATTCGACACTTTGTGTGTCGAATATTGT
1 TACTGTTACCGTTACCGATTCGACACTTTGTGTGTCGAATATTGT
* * *
25905584 TACTGTTACCGTTGCCGATTCGGCACTATGTGTGTCGAATATTGT
1 TACTGTTACCGTTACCGATTCGACACTTTGTGTGTCGAATATTGT
25905629 TACTGTTACCGTTACCGATTCGACACTTTGTGTGTCGAATATTGT
1 TACTGTTACCGTTACCGATTCGACACTTTGTGTGTCGAATATTGT
* * *
25905674 TACTGTTACCGTTATCGATTC-AGCACTTTGTGTGTTGAATACTGT
1 TACTGTTACCGTTACCGATTCGA-CACTTTGTGTGTCGAATATTGT
*
25905719 TACTGTTACTGTTAC
1 TACTGTTACCGTTAC
25905734 TATTCTAGAT
Statistics
Matches: 224, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
44 1 0.00
45 223 1.00
ACGTcount: A:0.19, C:0.20, G:0.21, T:0.40
Consensus pattern (45 bp):
TACTGTTACCGTTACCGATTCGACACTTTGTGTGTCGAATATTGT
Found at i:25905934 original size:18 final size:18
Alignment explanation
Indices: 25905913--25906103 Score: 153
Period size: 18 Copynumber: 10.6 Consensus size: 18
25905903 TAACTGATTA
25905913 TTACTGAATAATTGACTG
1 TTACTGAATAATTGACTG
*
25905931 TTAC-CAGATAATTGACTG
1 TTACTGA-ATAATTGACTG
*
25905949 TTACTGGAT-ATTAGACTG
1 TTACTGAATAATT-GACTG
* * *
25905967 TTACTGAATAACTGAATA
1 TTACTGAATAATTGACTG
*
25905985 TTACTGAATAATTGA-TCA
1 TTACTGAATAATTGACT-G
* *
25906003 TTACTGAATAACTGATTG
1 TTACTGAATAATTGACTG
*
25906021 TCACTGAATGAA-TGACTG
1 TTACTGAAT-AATTGACTG
* *
25906039 CTACTGAATAACTT-AATAG
1 TTACTGAATAA-TTGACT-G
*
25906058 TTACTGAAT-ATCTGA-TT
1 TTACTGAATAAT-TGACTG
25906075 TTACTGAATAATTGACTG
1 TTACTGAATAATTGACTG
*
25906093 TTACTGGATAA
1 TTACTGAATAA
25906104 CCGATCAATT
Statistics
Matches: 140, Mismatches: 19, Indels: 28
0.75 0.10 0.15
Matches are distributed among these distances:
17 20 0.14
18 104 0.74
19 16 0.11
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (18 bp):
TTACTGAATAATTGACTG
Found at i:25905989 original size:36 final size:36
Alignment explanation
Indices: 25905901--25906183 Score: 166
Period size: 36 Copynumber: 7.6 Consensus size: 36
25905891 AAAGGTATAA
* *
25905901 AATAACTGATTATTACTGAATAATTGACTGTTAC-C
1 AATAACTGAATATTACTGAATAATTGACTGTTACTG
* * * *
25905936 AGATAATTGACTGTTACTGGAT-ATTAGACTGTTACTG
1 A-ATAACTGAATATTACTGAATAATT-GACTGTTACTG
*
25905973 AATAACTGAATATTACTGAATAATTGA-TCATTACTG
1 AATAACTGAATATTACTGAATAATTGACT-GTTACTG
* * * *
25906009 AATAACTGATTGTCACTGAATGAA-TGACTGCTACTG
1 AATAACTGAATATTACTGAAT-AATTGACTGTTACTG
* *
25906045 AATAACTTAATAGTTACTGAAT-ATCTGA-TTTTACTG
1 AATAACTGAATA-TTACTGAATAAT-TGACTGTTACTG
* * * *
25906081 AATAATTGACTGTTACTGGATAACCGATCAATTGA-TCGATACTG
1 AATAACTGAATATTACT-G---A---AT-AATTGACT-GTTACTG
** * * *
25906125 AATAACTGGTTATTATTGAATAATTGATTGTTACCG
1 AATAACTGAATATTACTGAATAATTGACTGTTACTG
* *
25906161 AATAACTGACTGTTACTGAATAA
1 AATAACTGAATATTACTGAATAA
25906184 ATAATTATTC
Statistics
Matches: 189, Mismatches: 38, Indels: 41
0.71 0.14 0.15
Matches are distributed among these distances:
35 11 0.06
36 129 0.68
37 21 0.11
39 1 0.01
40 1 0.01
42 2 0.01
43 5 0.03
44 19 0.10
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.36
Consensus pattern (36 bp):
AATAACTGAATATTACTGAATAATTGACTGTTACTG
Found at i:25906038 original size:72 final size:72
Alignment explanation
Indices: 25905901--25906183 Score: 207
Period size: 72 Copynumber: 3.8 Consensus size: 72
25905891 AAAGGTATAA
* * * * * * *
25905901 AATAACTGATTATTACTGAATAATTGA-CTGTTAC-CAGATAATTGACTGTTACTGGATATTAGA
1 AATAACTGAATATTACTGAATAATTGATC-ATTACTGA-ATAACTGACTGTCACTGAATAATAGA
*
25905964 CTGTTACTG
64 CTGCTACTG
*
25905973 AATAACTGAATATTACTGAATAATTGATCATTACTGAATAACTGATTGTCACTGAATGAAT-GAC
1 AATAACTGAATATTACTGAATAATTGATCATTACTGAATAACTGACTGTCACTGAAT-AATAGAC
25906037 TGCTACTG
65 TGCTACTG
* * * * * **
25906045 AATAACTTAATAGTTACTGAAT-ATCTGAT-TTTACTGAATAATTGACTGTTACTGGATAACCGA
1 AATAACTGAATA-TTACTGAATAAT-TGATCATTACTGAATAACTGACTGTCACTGAATAATAGA
25906108 TCAATTGATCGATACTG
64 -C---TG--C--TACTG
** * ** * *
25906125 AATAACTGGTTATTATTGAATAATTGATTGTTACCGAATAACTGACTGTTACTGAATAA
1 AATAACTGAATATTACTGAATAATTGATCATTACTGAATAACTGACTGTCACTGAATAA
25906184 ATAATTATTC
Statistics
Matches: 171, Mismatches: 24, Indels: 24
0.78 0.11 0.11
Matches are distributed among these distances:
71 2 0.01
72 94 0.55
73 18 0.11
76 2 0.01
78 1 0.01
79 12 0.07
80 42 0.25
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.36
Consensus pattern (72 bp):
AATAACTGAATATTACTGAATAATTGATCATTACTGAATAACTGACTGTCACTGAATAATAGACT
GCTACTG
Found at i:25906163 original size:18 final size:18
Alignment explanation
Indices: 25906142--25906183 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
25906132 GGTTATTATT
* *
25906142 GAATAATTGATTGTTACC
1 GAATAACTGACTGTTACC
*
25906160 GAATAACTGACTGTTACT
1 GAATAACTGACTGTTACC
25906178 GAATAA
1 GAATAA
25906184 ATAATTATTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (18 bp):
GAATAACTGACTGTTACC
Found at i:25909595 original size:27 final size:26
Alignment explanation
Indices: 25909535--25909596 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
25909525 ATTTTATTTT
25909535 ATTTTATTAGGATAATTAATATTAAG
1 ATTTTATTAGGATAATTAATATTAAG
* * *
25909561 ATAATTATTAGGATTATTCAA-ATTTAGG
1 AT-TTTATTAGGATAATT-AATA-TTAAG
25909589 ATTTTATT
1 ATTTTATT
25909597 TTAATTATCT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
26 2 0.07
27 19 0.66
28 8 0.28
ACGTcount: A:0.39, C:0.02, G:0.11, T:0.48
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAG
Found at i:25916250 original size:22 final size:21
Alignment explanation
Indices: 25916238--25916282 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 21
25916228 GCCCTAGACT
25916238 AACCCTACACCTGCAGCCAAAC
1 AACCCTACACCTGCA-CCAAAC
25916260 AACCCTACACCTGCAGCCAAAC
1 AACCCTACACCTGCA-CCAAAC
25916282 A
1 A
25916283 CCACTTTTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.38, C:0.44, G:0.09, T:0.09
Consensus pattern (21 bp):
AACCCTACACCTGCACCAAAC
Found at i:25918672 original size:9 final size:9
Alignment explanation
Indices: 25918638--25918672 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
25918628 ATAAATAATA
25918638 AAAAAAAGAG
1 AAAAAAA-AG
25918648 AAAAAAAAG
1 AAAAAAAAG
25918657 -AAAAAAAG
1 AAAAAAAAG
25918665 AAAAAAAA
1 AAAAAAAA
25918673 TAAGTACTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 8 0.33
9 9 0.38
10 7 0.29
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:25920395 original size:510 final size:510
Alignment explanation
Indices: 25919711--25920730 Score: 2040
Period size: 510 Copynumber: 2.0 Consensus size: 510
25919701 TCCATGGCCC
25919711 TTAAGAAGTAAGCTTTTCAGCATATGCAAAGGCGGCCACTTTGTATGTTTTGGAAAGATTGCACA
1 TTAAGAAGTAAGCTTTTCAGCATATGCAAAGGCGGCCACTTTGTATGTTTTGGAAAGATTGCACA
25919776 GTCGGTTCGTTAACTTACTACGTCAGAGGTTGGCGAGCTGAAAAGACAAAATGGCGTGGGATTCG
66 GTCGGTTCGTTAACTTACTACGTCAGAGGTTGGCGAGCTGAAAAGACAAAATGGCGTGGGATTCG
25919841 CCATTGAGAAGCGTTGATCTAGCATAGATTACGGGCTAGAGTCAGGTTCCCTAAAACTCGTAAGT
131 CCATTGAGAAGCGTTGATCTAGCATAGATTACGGGCTAGAGTCAGGTTCCCTAAAACTCGTAAGT
25919906 CTAATATTTGGAGCTGGTGGTTGTAGGCGTCCTCTTCCACTATAACTGGCTTACTTGAGTTGAGA
196 CTAATATTTGGAGCTGGTGGTTGTAGGCGTCCTCTTCCACTATAACTGGCTTACTTGAGTTGAGA
25919971 AGGATCATCCAAAAGCCAAGGATTGAGCCCAAGGCGGAATGAGACAACCGGAGGCTGGAACTTTC
261 AGGATCATCCAAAAGCCAAGGATTGAGCCCAAGGCGGAATGAGACAACCGGAGGCTGGAACTTTC
25920036 CCATAAGAATTTCTTTTCTCTTAAAACTCTCTTTATTATTTTTATTATTTTCGTAATCATAATTT
326 CCATAAGAATTTCTTTTCTCTTAAAACTCTCTTTATTATTTTTATTATTTTCGTAATCATAATTT
25920101 CAGTAAACTTTAAATTCTGTTTTTATTTTATTTTCCGCTTCCAAAATCAATTCTTAAATTCTGTT
391 CAGTAAACTTTAAATTCTGTTTTTATTTTATTTTCCGCTTCCAAAATCAATTCTTAAATTCTGTT
25920166 TTTTTTTTTATTTTTATTTTTTCCAGGAACGCAGGTTTTCTTGGGCACGATTCTT
456 TTTTTTTTTATTTTTATTTTTTCCAGGAACGCAGGTTTTCTTGGGCACGATTCTT
25920221 TTAAGAAGTAAGCTTTTCAGCATATGCAAAGGCGGCCACTTTGTATGTTTTGGAAAGATTGCACA
1 TTAAGAAGTAAGCTTTTCAGCATATGCAAAGGCGGCCACTTTGTATGTTTTGGAAAGATTGCACA
25920286 GTCGGTTCGTTAACTTACTACGTCAGAGGTTGGCGAGCTGAAAAGACAAAATGGCGTGGGATTCG
66 GTCGGTTCGTTAACTTACTACGTCAGAGGTTGGCGAGCTGAAAAGACAAAATGGCGTGGGATTCG
25920351 CCATTGAGAAGCGTTGATCTAGCATAGATTACGGGCTAGAGTCAGGTTCCCTAAAACTCGTAAGT
131 CCATTGAGAAGCGTTGATCTAGCATAGATTACGGGCTAGAGTCAGGTTCCCTAAAACTCGTAAGT
25920416 CTAATATTTGGAGCTGGTGGTTGTAGGCGTCCTCTTCCACTATAACTGGCTTACTTGAGTTGAGA
196 CTAATATTTGGAGCTGGTGGTTGTAGGCGTCCTCTTCCACTATAACTGGCTTACTTGAGTTGAGA
25920481 AGGATCATCCAAAAGCCAAGGATTGAGCCCAAGGCGGAATGAGACAACCGGAGGCTGGAACTTTC
261 AGGATCATCCAAAAGCCAAGGATTGAGCCCAAGGCGGAATGAGACAACCGGAGGCTGGAACTTTC
25920546 CCATAAGAATTTCTTTTCTCTTAAAACTCTCTTTATTATTTTTATTATTTTCGTAATCATAATTT
326 CCATAAGAATTTCTTTTCTCTTAAAACTCTCTTTATTATTTTTATTATTTTCGTAATCATAATTT
25920611 CAGTAAACTTTAAATTCTGTTTTTATTTTATTTTCCGCTTCCAAAATCAATTCTTAAATTCTGTT
391 CAGTAAACTTTAAATTCTGTTTTTATTTTATTTTCCGCTTCCAAAATCAATTCTTAAATTCTGTT
25920676 TTTTTTTTTATTTTTATTTTTTCCAGGAACGCAGGTTTTCTTGGGCACGATTCTT
456 TTTTTTTTTATTTTTATTTTTTCCAGGAACGCAGGTTTTCTTGGGCACGATTCTT
25920731 CCCAGGATTT
Statistics
Matches: 510, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
510 510 1.00
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (510 bp):
TTAAGAAGTAAGCTTTTCAGCATATGCAAAGGCGGCCACTTTGTATGTTTTGGAAAGATTGCACA
GTCGGTTCGTTAACTTACTACGTCAGAGGTTGGCGAGCTGAAAAGACAAAATGGCGTGGGATTCG
CCATTGAGAAGCGTTGATCTAGCATAGATTACGGGCTAGAGTCAGGTTCCCTAAAACTCGTAAGT
CTAATATTTGGAGCTGGTGGTTGTAGGCGTCCTCTTCCACTATAACTGGCTTACTTGAGTTGAGA
AGGATCATCCAAAAGCCAAGGATTGAGCCCAAGGCGGAATGAGACAACCGGAGGCTGGAACTTTC
CCATAAGAATTTCTTTTCTCTTAAAACTCTCTTTATTATTTTTATTATTTTCGTAATCATAATTT
CAGTAAACTTTAAATTCTGTTTTTATTTTATTTTCCGCTTCCAAAATCAATTCTTAAATTCTGTT
TTTTTTTTTATTTTTATTTTTTCCAGGAACGCAGGTTTTCTTGGGCACGATTCTT
Found at i:25921317 original size:48 final size:47
Alignment explanation
Indices: 25921207--25921331 Score: 137
Period size: 48 Copynumber: 2.7 Consensus size: 47
25921197 AATCGATAAG
* * *
25921207 TACCTATACCATGG-CCGTAGCCAAATCAATGTAACTTATCCCGGAG
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCCCGAAA
** * *
25921253 TACCTATAAAATGGCCCGTAGCCAAATCAAGGTAA-TTCCTCTCTGAAA
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTT-ATC-CCGAAA
* *
25921301 TACCTATACCATGGCCCATATCCAAATCAAG
1 TACCTATACCATGGCCCGTAGCCAAATCAAG
25921332 ATATCATTCG
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
46 14 0.22
47 21 0.32
48 30 0.46
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (47 bp):
TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCCCGAAA
Found at i:25928478 original size:48 final size:47
Alignment explanation
Indices: 25928363--25928490 Score: 152
Period size: 48 Copynumber: 2.7 Consensus size: 47
25928353 AATCGATAAG
* * * *
25928363 TACCTATACCAAGGCCCTA-A-CCAAATCAAGGTAACTTATCCCGGAT
1 TACCTATACCATGGCCC-ACAGCCAAATCAAGGTAACTCATCCCGAAA
* * * *
25928409 TACCTATAACATGGCCTACAGCCAAATCAAGGTAACTCCTCTCTGAAA
1 TACCTATACCATGGCCCACAGCCAAATCAAGGTAACTCATC-CCGAAA
25928457 TACCTATACCATGGCCCACAGCCAAATCAAGGTA
1 TACCTATACCATGGCCCACAGCCAAATCAAGGTA
25928491 TCACTCAGAC
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
45 1 0.01
46 15 0.22
47 18 0.26
48 35 0.51
ACGTcount: A:0.35, C:0.30, G:0.13, T:0.21
Consensus pattern (47 bp):
TACCTATACCATGGCCCACAGCCAAATCAAGGTAACTCATCCCGAAA
Found at i:25929531 original size:6 final size:6
Alignment explanation
Indices: 25929520--25929558 Score: 78
Period size: 6 Copynumber: 6.5 Consensus size: 6
25929510 GTAATTTAAT
25929520 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATA
25929559 TATAATAATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (6 bp):
ATAAAA
Found at i:25932602 original size:6 final size:7
Alignment explanation
Indices: 25932585--25932609 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
25932575 TAATGAAACA
25932585 AAAAAAG
1 AAAAAAG
25932592 AAAAAAG
1 AAAAAAG
25932599 AAAAAAG
1 AAAAAAG
25932606 AAAA
1 AAAA
25932610 TCGTTTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:25933626 original size:39 final size:40
Alignment explanation
Indices: 25933583--25933669 Score: 106
Period size: 39 Copynumber: 2.2 Consensus size: 40
25933573 AAAAATTATA
25933583 TTTAATACAATAAAAAAATTATTATATTTAT-TT-ATGTTT
1 TTTAATACAATAAAAAAATTATTATATTTATGTTGAT-TTT
* * * *
25933622 TTTAATATAATAAGACATTTATTATATTTATGGTTGATTTT
1 TTTAATACAATAAAAAAATTATTATATTTAT-GTTGATTTT
25933663 TTTAATA
1 TTTAATA
25933670 TAAATACTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
39 27 0.66
41 12 0.29
42 2 0.05
ACGTcount: A:0.39, C:0.02, G:0.06, T:0.53
Consensus pattern (40 bp):
TTTAATACAATAAAAAAATTATTATATTTATGTTGATTTT
Found at i:25938498 original size:2 final size:2
Alignment explanation
Indices: 25938493--25938517 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
25938483 CTCTCTCTCT
25938493 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
25938518 CCCGGGGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:25943613 original size:50 final size:49
Alignment explanation
Indices: 25943505--25943696 Score: 231
Period size: 50 Copynumber: 3.7 Consensus size: 49
25943495 ACATGCCAAA
** *
25943505 GCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGT-CTGGTGCCCAT
25943556 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCT-GGTGCCCAT
* * *
25943606 GGCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGGATGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTC--G-TC-T--GG-TGCCCAT
*
25943662 GCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCT
25943697 TTACCCAAAT
Statistics
Matches: 124, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
49 1 0.01
50 49 0.40
51 30 0.24
52 1 0.01
53 2 0.02
54 1 0.01
55 2 0.02
56 38 0.31
ACGTcount: A:0.20, C:0.28, G:0.25, T:0.27
Consensus pattern (49 bp):
GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTGGTGCCCAT
Found at i:25943812 original size:13 final size:13
Alignment explanation
Indices: 25943791--25943822 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
25943781 GCTTGGATCA
*
25943791 TCATCAAATAAAT
1 TCATAAAATAAAT
25943804 TCATAAAATAAAT
1 TCATAAAATAAAT
25943817 TCATAA
1 TCATAA
25943823 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:25944069 original size:30 final size:30
Alignment explanation
Indices: 25944034--25944091 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
25944024 CCTCGACTCT
*
25944034 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
25944064 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
25944092 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:25951937 original size:13 final size:13
Alignment explanation
Indices: 25951915--25951947 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
25951905 AAAATGCTTC
25951915 ATAT-ATATATAT
1 ATATAATATATAT
25951927 ATATAATATATAT
1 ATATAATATATAT
*
25951940 ATAAAATA
1 ATATAATA
25951948 CTTTTAAGTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (13 bp):
ATATAATATATAT
Found at i:25952369 original size:7 final size:7
Alignment explanation
Indices: 25952345--25952391 Score: 71
Period size: 7 Copynumber: 7.0 Consensus size: 7
25952335 GCAGTTTAAA
25952345 ATTCAA-
1 ATTCAAG
25952351 ATTCAA-
1 ATTCAAG
25952357 ATTCAAG
1 ATTCAAG
25952364 ATTCAAG
1 ATTCAAG
25952371 ATTCAAG
1 ATTCAAG
*
25952378 ATTCAAT
1 ATTCAAG
25952385 ATTCAAG
1 ATTCAAG
25952392 GTTTAAAGTT
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
6 12 0.32
7 26 0.68
ACGTcount: A:0.45, C:0.15, G:0.09, T:0.32
Consensus pattern (7 bp):
ATTCAAG
Found at i:25953396 original size:15 final size:15
Alignment explanation
Indices: 25953364--25953402 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 15
25953354 ACCTTTCATC
25953364 AATAATTTTATAATT
1 AATAATTTTATAATT
25953379 AAT-ATTTT-TAA-T
1 AATAATTTTATAATT
25953391 AATAA-TTTATAA
1 AATAATTTTATAA
25953403 CATATAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
12 7 0.32
13 7 0.32
14 5 0.23
15 3 0.14
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
AATAATTTTATAATT
Found at i:25957574 original size:7 final size:6
Alignment explanation
Indices: 25957540--25957571 Score: 55
Period size: 6 Copynumber: 5.2 Consensus size: 6
25957530 AATAGACCAT
25957540 AAAAGG AAAAGG AAAAGG AAAAGG ATAAAGG A
1 AAAAGG AAAAGG AAAAGG AAAAGG A-AAAGG A
25957572 TAATTTGAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 19 0.76
7 6 0.24
ACGTcount: A:0.66, C:0.00, G:0.31, T:0.03
Consensus pattern (6 bp):
AAAAGG
Found at i:25958105 original size:39 final size:38
Alignment explanation
Indices: 25958051--25958125 Score: 98
Period size: 39 Copynumber: 1.9 Consensus size: 38
25958041 ATTTTTAAAA
* * *
25958051 TTTTAAAATATTTTTTTATAA-TTTTTTTACTTTTTACT
1 TTTTAAAATA-ATTTTTACAATTTTTTTTAATTTTTACT
25958089 TTTTAAATATAATTTTTACAATTTTTTTTAATTTTTA
1 TTTTAAA-ATAATTTTTACAATTTTTTTTAATTTTTA
25958126 AAATTTTAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
38 15 0.47
39 17 0.53
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (38 bp):
TTTTAAAATAATTTTTACAATTTTTTTTAATTTTTACT
Found at i:25962068 original size:82 final size:82
Alignment explanation
Indices: 25961931--25962163 Score: 448
Period size: 82 Copynumber: 2.8 Consensus size: 82
25961921 GTTCTAACTT
25961931 ATAAATTCATAAATGGTATGTTATATTAGTAACTCACTAATTCATTTGAACTTAGTTTGTTATGT
1 ATAAATTCATAAATGGTATGTTATATTAGTAACTCACTAATTCATTTGAACTTAGTTTGTTATGT
25961996 TTTCCAGGTATAAATTC
66 TTTCCAGGTATAAATTC
25962013 ATAAATTCATAAATGGTATGTTATATTAGTAACTCACTAATTCATTTGAACTTAGTTTGTTATGT
1 ATAAATTCATAAATGGTATGTTATATTAGTAACTCACTAATTCATTTGAACTTAGTTTGTTATGT
25962078 TTTCCAGGTATAAATTC
66 TTTCCAGGTATAAATTC
* *
25962095 ATAAATTCATAAATGGTATGTTATATTAGTAACTCACAAATTCATTTGAACTTTGTTTGTTATGT
1 ATAAATTCATAAATGGTATGTTATATTAGTAACTCACTAATTCATTTGAACTTAGTTTGTTATGT
25962160 TTTC
66 TTTC
25962164 TAGAATTCGT
Statistics
Matches: 149, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 149 1.00
ACGTcount: A:0.33, C:0.11, G:0.12, T:0.45
Consensus pattern (82 bp):
ATAAATTCATAAATGGTATGTTATATTAGTAACTCACTAATTCATTTGAACTTAGTTTGTTATGT
TTTCCAGGTATAAATTC
Found at i:25962865 original size:12 final size:12
Alignment explanation
Indices: 25962848--25962873 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
25962838 TAATATAAAT
25962848 AAATAATTTTAA
1 AAATAATTTTAA
25962860 AAATAATTTTAA
1 AAATAATTTTAA
25962872 AA
1 AA
25962874 CTTGAATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
AAATAATTTTAA
Found at i:25962999 original size:15 final size:14
Alignment explanation
Indices: 25962981--25963019 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
25962971 TGAAAATTAT
25962981 AAATTTATAAATAAA
1 AAATTT-TAAATAAA
* *
25962996 AAATTTCAAATATA
1 AAATTTTAAATAAA
25963010 AAATTTTAAA
1 AAATTTTAAA
25963020 ATCTAAATTC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 15 0.71
15 6 0.29
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (14 bp):
AAATTTTAAATAAA
Found at i:25963176 original size:31 final size:31
Alignment explanation
Indices: 25963141--25963326 Score: 214
Period size: 31 Copynumber: 5.9 Consensus size: 31
25963131 TTGGTATATG
* *
25963141 AACTTGATACTTTTTCCTAATTTGGCACCCA
1 AACTTGACACTTTTTCCTAATTTGGTACCCA
* *
25963172 AACTTGACAGTTTTTCCTAATTTGGTACTCA
1 AACTTGACACTTTTTCCTAATTTGGTACCCA
*
25963203 AACTAT-ACACTTTTTCCTAATTTGGTACCTA
1 AACT-TGACACTTTTTCCTAATTTGGTACCCA
* *
25963234 AACTTGACACTTTTTTCTTAAATTTGGTACTCA
1 AACTTGACAC-TTTTTCCT-AATTTGGTACCCA
*
25963267 AACTAT-ACACTTTTTCCTAATTTGGTACCTA
1 AACT-TGACACTTTTTCCTAATTTGGTACCCA
* * *
25963298 AACTTGACCCTTTTTTCTTAAGTTGGTAC
1 AACTTGACAC-TTTTTCCTAATTTGGTAC
25963327 TTAATCTTTT
Statistics
Matches: 132, Mismatches: 16, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
30 2 0.02
31 79 0.60
32 31 0.23
33 19 0.14
34 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.10, T:0.42
Consensus pattern (31 bp):
AACTTGACACTTTTTCCTAATTTGGTACCCA
Found at i:25963285 original size:64 final size:63
Alignment explanation
Indices: 25963149--25963327 Score: 288
Period size: 64 Copynumber: 2.8 Consensus size: 63
25963139 TGAACTTGAT
* * * *
25963149 ACTTTTTCCTAATTTGGCACCCAAACTTGACA-GTTTTTCCTAATTTGGTACTCAAACTATAC
1 ACTTTTTCCTAATTTGGTACCTAAACTTGACACTTTTTTCTTAATTTGGTACTCAAACTATAC
25963211 ACTTTTTCCTAATTTGGTACCTAAACTTGACACTTTTTTCTTAAATTTGGTACTCAAACTATAC
1 ACTTTTTCCTAATTTGGTACCTAAACTTGACACTTTTTTCTT-AATTTGGTACTCAAACTATAC
* *
25963275 ACTTTTTCCTAATTTGGTACCTAAACTTGACCCTTTTTTCTTAAGTTGGTACT
1 ACTTTTTCCTAATTTGGTACCTAAACTTGACACTTTTTTCTTAATTTGGTACT
25963328 TAATCTTTTT
Statistics
Matches: 109, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
62 30 0.28
63 17 0.16
64 62 0.57
ACGTcount: A:0.26, C:0.22, G:0.09, T:0.43
Consensus pattern (63 bp):
ACTTTTTCCTAATTTGGTACCTAAACTTGACACTTTTTTCTTAATTTGGTACTCAAACTATAC
Found at i:25963311 original size:95 final size:94
Alignment explanation
Indices: 25963141--25963326 Score: 227
Period size: 95 Copynumber: 2.0 Consensus size: 94
25963131 TTGGTATATG
* *
25963141 AACTTGATACTTTTTCCTAATTTGGCACCCAAACTTGACAGTTTTTCCTAATTTGGTACTCAAAC
1 AACTTGACACTTTTTCCTAATTTGGCACCCAAACTTGACACTTTTTCCTAATTTGGTACTCAAAC
*
25963206 TATACAC-TTTTTCCTAATTTGGTACCTA
66 TATACACTTTTTTCCTAAGTTGGTACCTA
* * *
25963234 AACTTGACACTTTTTTCTTAAATTTGGTACTCAAACTAT-ACACTTTTTCCTAATTTGGTAC-CT
1 AACTTGACAC-TTTTTCCT-AATTTGGCACCCAAACT-TGACACTTTTTCCTAATTTGGTACTC-
* *
25963297 AAACT-TGACCCTTTTTTCTTAAGTTGGTAC
62 AAACTAT-ACACTTTTTTCCTAAGTTGGTAC
25963327 TTAATCTTTT
Statistics
Matches: 79, Mismatches: 8, Indels: 9
0.82 0.08 0.09
Matches are distributed among these distances:
93 9 0.11
94 9 0.11
95 44 0.56
96 17 0.22
ACGTcount: A:0.26, C:0.22, G:0.10, T:0.42
Consensus pattern (94 bp):
AACTTGACACTTTTTCCTAATTTGGCACCCAAACTTGACACTTTTTCCTAATTTGGTACTCAAAC
TATACACTTTTTTCCTAAGTTGGTACCTA
Found at i:25963817 original size:60 final size:57
Alignment explanation
Indices: 25963745--25963887 Score: 153
Period size: 58 Copynumber: 2.5 Consensus size: 57
25963735 ATTTAATAAA
* * *
25963745 TTTAGGTACCAAATTGAACCTAAAAAAACTTAGGTACCAAATTAGAAAAAAAATGCCAAG
1 TTTAGGTACCAAATTGAA--GAAAAAAAATTAGATACCAAATTAG-AAAAAAATGCCAAG
* * * *
25963805 TTTAGGTACCAAATTGGGAGAAAAAAAATTAGATACTAAATTAGAAAAAAGTGTCAAG
1 TTTAGGTACCAAATT-GAAGAAAAAAAATTAGATACCAAATTAGAAAAAAATGCCAAG
* * *
25963863 TTCAGGTACTAAATTG-AGTAAAAAA
1 TTTAGGTACCAAATTGAAGAAAAAAA
25963888 TAGTTTAGAT
Statistics
Matches: 72, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
56 8 0.11
57 1 0.01
58 25 0.35
59 21 0.29
60 15 0.21
61 2 0.03
ACGTcount: A:0.50, C:0.10, G:0.16, T:0.24
Consensus pattern (57 bp):
TTTAGGTACCAAATTGAAGAAAAAAAATTAGATACCAAATTAGAAAAAAATGCCAAG
Found at i:25963887 original size:58 final size:59
Alignment explanation
Indices: 25963766--25963878 Score: 156
Period size: 58 Copynumber: 1.9 Consensus size: 59
25963756 AATTGAACCT
* * * *
25963766 AAAAAAACTTAGGTACCAAATTAGAAAAAAAATGCCAAGTTTAGGTACCAAATTGGGAG
1 AAAAAAAATTAGATACTAAATTAGAAAAAAAATGCCAAGTTCAGGTACCAAATTGGGAG
* * *
25963825 AAAAAAAATTAGATACTAAATTAG-AAAAAAGTGTCAAGTTCAGGTACTAAATTG
1 AAAAAAAATTAGATACTAAATTAGAAAAAAAATGCCAAGTTCAGGTACCAAATTG
25963879 AGTAAAAAAT
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
58 26 0.55
59 21 0.45
ACGTcount: A:0.50, C:0.10, G:0.17, T:0.23
Consensus pattern (59 bp):
AAAAAAAATTAGATACTAAATTAGAAAAAAAATGCCAAGTTCAGGTACCAAATTGGGAG
Found at i:25963897 original size:59 final size:58
Alignment explanation
Indices: 25963748--25963906 Score: 151
Period size: 59 Copynumber: 2.7 Consensus size: 58
25963738 TAATAAATTT
* * * * * *
25963748 AGGTACCAAATTGAACCTAAAAAAACTTAGGTACCAAATTAGAAAAAAAATGCCAAGTTT
1 AGGTACCAAATTGGA--GAAAAAAAATTAGATACTAAATTAGAAAAAAAATGCCAAGTTC
* *
25963808 AGGTACCAAATTGGGAGAAAAAAAATTAGATACTAAATTAG-AAAAAAGTGTCAAGTTC
1 AGGTACCAAATT-GGAGAAAAAAAATTAGATACTAAATTAGAAAAAAAATGCCAAGTTC
* * *
25963866 AGGTACTAAATT-GAGTAAAAAATAGTTTAGATGCTAAATTA
1 AGGTACCAAATTGGAG-AAAAAA-A-ATTAGATACTAAATTA
25963907 ATATATATAT
Statistics
Matches: 84, Mismatches: 11, Indels: 9
0.81 0.11 0.09
Matches are distributed among these distances:
56 3 0.04
57 6 0.07
58 26 0.31
59 35 0.42
60 12 0.14
61 2 0.02
ACGTcount: A:0.49, C:0.10, G:0.16, T:0.25
Consensus pattern (58 bp):
AGGTACCAAATTGGAGAAAAAAAATTAGATACTAAATTAGAAAAAAAATGCCAAGTTC
Found at i:25964142 original size:14 final size:15
Alignment explanation
Indices: 25964123--25964158 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
25964113 TAGTTCATGC
25964123 TATTAAAATATG-TA
1 TATTAAAATATGCTA
*
25964137 TATTAATATATGCTA
1 TATTAAAATATGCTA
25964152 TATTAAA
1 TATTAAA
25964159 CAAGGTTAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
14 11 0.58
15 8 0.42
ACGTcount: A:0.47, C:0.03, G:0.06, T:0.44
Consensus pattern (15 bp):
TATTAAAATATGCTA
Found at i:25971013 original size:15 final size:15
Alignment explanation
Indices: 25970976--25971004 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
25970966 GGTGGTCAGT
25970976 GTCATGGTGGCTATA
1 GTCATGGTGGCTATA
25970991 GTCATGGTGGCTAT
1 GTCATGGTGGCTAT
25971005 GGTCGTGGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.14, G:0.34, T:0.34
Consensus pattern (15 bp):
GTCATGGTGGCTATA
Found at i:25971270 original size:12 final size:11
Alignment explanation
Indices: 25971222--25971280 Score: 57
Period size: 12 Copynumber: 5.2 Consensus size: 11
25971212 AAATAAAGAC
25971222 AAAAAGAAATG
1 AAAAAGAAATG
*
25971233 CAAAAAGAAA-A
1 -AAAAAGAAATG
*
25971244 AAAAAGAAAAAG
1 AAAAAG-AAATG
25971256 AAAAAGAAATCG
1 AAAAAGAAAT-G
*
25971268 AAAAATAAATG
1 AAAAAGAAATG
25971279 AA
1 AA
25971281 CTCAAAAGTC
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
10 6 0.15
11 9 0.22
12 25 0.62
ACGTcount: A:0.76, C:0.03, G:0.14, T:0.07
Consensus pattern (11 bp):
AAAAAGAAATG
Found at i:25983659 original size:36 final size:36
Alignment explanation
Indices: 25983612--25983686 Score: 150
Period size: 36 Copynumber: 2.1 Consensus size: 36
25983602 TCAATGGAAT
25983612 CTTAAGGAGAGGCTCTAGAAATCATGATATCATCAG
1 CTTAAGGAGAGGCTCTAGAAATCATGATATCATCAG
25983648 CTTAAGGAGAGGCTCTAGAAATCATGATATCATCAG
1 CTTAAGGAGAGGCTCTAGAAATCATGATATCATCAG
25983684 CTT
1 CTT
25983687 TTGGACAAGG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (36 bp):
CTTAAGGAGAGGCTCTAGAAATCATGATATCATCAG
Found at i:25995187 original size:18 final size:19
Alignment explanation
Indices: 25995164--25995203 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
25995154 GTATATATTT
*
25995164 TAAATTT-ATTTAGGTAGA
1 TAAATTTCATTTAGGTAAA
25995182 TAAATTTCATTTAGGTAAA
1 TAAATTTCATTTAGGTAAA
25995201 TAA
1 TAA
25995204 GTTTTATTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.42, C:0.03, G:0.12, T:0.42
Consensus pattern (19 bp):
TAAATTTCATTTAGGTAAA
Found at i:25999609 original size:19 final size:19
Alignment explanation
Indices: 25999563--25999610 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
25999553 ATAAATATTT
*
25999563 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAAA
*
25999581 TAAATCTTATTTAGGTAAA
1 TAAATTTTATTTAGGTAAA
*
25999600 TAAGTTTTATT
1 TAAATTTTATT
25999611 CATATTCTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 4 0.16
19 21 0.84
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAAA
Found at i:25999686 original size:42 final size:42
Alignment explanation
Indices: 25999627--25999712 Score: 154
Period size: 42 Copynumber: 2.0 Consensus size: 42
25999617 CTAGGAATAT
25999627 TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGGGAACTA
1 TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGGGAACTA
* *
25999669 TTTTCTTTTATGTTTTAGTAGTTTATTAGAATAAGGGAACTA
1 TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGGGAACTA
25999711 TT
1 TT
25999713 GTCCTAATTA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.29, C:0.05, G:0.15, T:0.51
Consensus pattern (42 bp):
TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGGGAACTA
Found at i:25999766 original size:25 final size:25
Alignment explanation
Indices: 25999732--25999783 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
25999722 AGGATTAGGA
25999732 CTCTTTTCTCTATTTAAGTTCAGTT
1 CTCTTTTCTCTATTTAAGTTCAGTT
25999757 CTCTTTTCTCTATTTAAGTTCAGTT
1 CTCTTTTCTCTATTTAAGTTCAGTT
25999782 CT
1 CT
25999784 TTAGTTAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.15, C:0.21, G:0.08, T:0.56
Consensus pattern (25 bp):
CTCTTTTCTCTATTTAAGTTCAGTT
Found at i:26002822 original size:31 final size:31
Alignment explanation
Indices: 26002740--26002826 Score: 88
Period size: 31 Copynumber: 2.8 Consensus size: 31
26002730 CACTAATTCT
* * * *
26002740 TTAAATTATT-AATAAATTTATATCTTAATTA
1 TTAAATTATTCAA-AAGTTTTTATTTTACTTA
*
26002771 TTAAATTATTGAAAAGTTTTTATTTTACTTA
1 TTAAATTATTCAAAAGTTTTTATTTTACTTA
*
26002802 TTTAATTATTCAAATA-TTTTTATTT
1 TTAAATTATTCAAA-AGTTTTTATTT
26002827 AGCTCATTAA
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
31 45 0.94
32 3 0.06
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.56
Consensus pattern (31 bp):
TTAAATTATTCAAAAGTTTTTATTTTACTTA
Found at i:26002885 original size:23 final size:23
Alignment explanation
Indices: 26002859--26002902 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
26002849 ATGGATTTAA
26002859 TTATTGACATAGT-GAATCAAAAT
1 TTATTGACA-AGTAGAATCAAAAT
*
26002882 TTATTGATAAGTAGAATCAAA
1 TTATTGACAAGTAGAATCAAA
26002903 GTCAATTTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 3 0.16
23 16 0.84
ACGTcount: A:0.45, C:0.07, G:0.14, T:0.34
Consensus pattern (23 bp):
TTATTGACAAGTAGAATCAAAAT
Found at i:26005012 original size:2 final size:2
Alignment explanation
Indices: 26005005--26005074 Score: 81
Period size: 2 Copynumber: 36.0 Consensus size: 2
26004995 TCATTTCCAA
* * * *
26005005 CT CT CT CT CT CT CT CT CT CT CT C- CC CT CT CT CT CT TT CC CC
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
*
26005046 CC CT CT CT CT CT CT CT CT CT CT -T CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
26005075 TTGTCTTTTT
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
1 2 0.03
2 59 0.97
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (2 bp):
CT
Found at i:26005840 original size:137 final size:138
Alignment explanation
Indices: 26005579--26005848 Score: 398
Period size: 137 Copynumber: 2.0 Consensus size: 138
26005569 AAACTCGAAC
* * * **
26005579 TGTAACACCCCTAACTTGCCTCCGTCGCTGGATTAGGGTTACGGAGTATTACCGTACAATAAAAA
1 TGTAACACCCCTAACCTGCCTCCATCGCTGAATTAGGGTTACAAAGTATTACCGTACAATAAAAA
** *
26005644 AATATTCAAACACCATAACATTCAATAATTTAAATATATCATAAGCCATTCAATTACATACATTT
66 AATATTCAAACACCATAACATTCAATAATTTAAATATATCATAAAACATTCAATCACATACATTT
26005709 CATATAAA
131 CATATAAA
* * * *
26005717 TGTAACACCCCTAACCTGCCTCCATCGTTGAATTAGGGTTACAAAGTATTATCGTACAAT-TAGA
1 TGTAACACCCCTAACCTGCCTCCATCGCTGAATTAGGGTTACAAAGTATTACCGTACAATAAAAA
* * *
26005781 AATATTCAAACATCATAACATTCATTAATTTAAATATATCATAAAACATTCAATCACATATATTT
66 AATATTCAAACACCATAACATTCAATAATTTAAATATATCATAAAACATTCAATCACATACATTT
26005846 CAT
131 CAT
26005849 CCCTAAATCG
Statistics
Matches: 117, Mismatches: 15, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
137 64 0.55
138 53 0.45
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.31
Consensus pattern (138 bp):
TGTAACACCCCTAACCTGCCTCCATCGCTGAATTAGGGTTACAAAGTATTACCGTACAATAAAAA
AATATTCAAACACCATAACATTCAATAATTTAAATATATCATAAAACATTCAATCACATACATTT
CATATAAA
Found at i:26007496 original size:20 final size:20
Alignment explanation
Indices: 26007471--26007508 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26007461 TACTAAACCA
26007471 AAAACTTTAG-AAATTTTTAC
1 AAAAC-TTAGAAAATTTTTAC
26007491 AAAACTTAGAAAATTTTT
1 AAAACTTAGAAAATTTTT
26007509 TCCCTAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.47, C:0.08, G:0.05, T:0.39
Consensus pattern (20 bp):
AAAACTTAGAAAATTTTTAC
Found at i:26010042 original size:31 final size:31
Alignment explanation
Indices: 26009985--26010043 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 31
26009975 CACCCTTAAA
* * *
26009985 ATATTTGCACTATTAGTCCTTCAATTTTTTC
1 ATATTTACACTATTAGCCCCTCAATTTTTTC
*
26010016 ATATTTACACT-TTAGCCCCTCAAATTTT
1 ATATTTACACTATTAGCCCCTCAATTTTT
26010044 GAGTATTTAC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 14 0.58
31 10 0.42
ACGTcount: A:0.25, C:0.22, G:0.05, T:0.47
Consensus pattern (31 bp):
ATATTTACACTATTAGCCCCTCAATTTTTTC
Found at i:26012807 original size:37 final size:37
Alignment explanation
Indices: 26012757--26012835 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
26012747 TTATTACGAA
* *
26012757 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
26012794 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
26012831 GTCTT
1 GTCTT
26012836 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:26013057 original size:46 final size:47
Alignment explanation
Indices: 26012954--26013097 Score: 191
Period size: 47 Copynumber: 3.1 Consensus size: 47
26012944 CCCTTCGGGA
* * * * * * * *
26012954 CTTATCACATTTATGCACTTTCGCATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26013001 CCTGTCACATATATACACTTTCACATTCA-CACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26013047 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26013094 CTTA
1 CTTA
26013098 CTATCATTTC
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
46 40 0.48
47 44 0.52
ACGTcount: A:0.26, C:0.32, G:0.11, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26024182 original size:20 final size:20
Alignment explanation
Indices: 26024159--26024196 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26024149 GCAGAAGCAA
26024159 ACTTGTATCG-ATAGAAGTGG
1 ACTTGTAT-GTATAGAAGTGG
26024179 ACTTGTATGTATAGAAGT
1 ACTTGTATGTATAGAAGT
26024197 CCTTCTAAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.32, C:0.08, G:0.26, T:0.34
Consensus pattern (20 bp):
ACTTGTATGTATAGAAGTGG
Found at i:26035762 original size:16 final size:17
Alignment explanation
Indices: 26035741--26035772 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
26035731 GTTATCAAAT
26035741 TTTATTTTATT-TTTTA
1 TTTATTTTATTCTTTTA
26035757 TTTATTTTATTCTTTT
1 TTTATTTTATTCTTTT
26035773 TCAAAAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.81
Consensus pattern (17 bp):
TTTATTTTATTCTTTTA
Found at i:26036451 original size:33 final size:31
Alignment explanation
Indices: 26036411--26036485 Score: 87
Period size: 33 Copynumber: 2.4 Consensus size: 31
26036401 CCACACGGAC
*
26036411 GTGTGGGCCCACACGAGTAAGACCAAACTGGGT
1 GTGTGGGCCCACACGAGCAAG-CCAAAC-GGGT
* * *
26036444 GTGTGGGCCTATACGAGCAAGCCACACGGGT
1 GTGTGGGCCCACACGAGCAAGCCAAACGGGT
*
26036475 GTGTAGGCCCA
1 GTGTGGGCCCA
26036486 TTTATCTGAA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
31 13 0.36
32 5 0.14
33 18 0.50
ACGTcount: A:0.24, C:0.25, G:0.35, T:0.16
Consensus pattern (31 bp):
GTGTGGGCCCACACGAGCAAGCCAAACGGGT
Found at i:26039814 original size:16 final size:17
Alignment explanation
Indices: 26039793--26039824 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
26039783 GTTATCAGAT
26039793 TTTATTTTATT-TTTTA
1 TTTATTTTATTCTTTTA
26039809 TTTATTTTATTCTTTT
1 TTTATTTTATTCTTTT
26039825 TTAAAAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.81
Consensus pattern (17 bp):
TTTATTTTATTCTTTTA
Found at i:26041294 original size:22 final size:22
Alignment explanation
Indices: 26041268--26041311 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
26041258 GTTTATTCGG
26041268 GGTTTATTTTATGTAATTCAGA
1 GGTTTATTTTATGTAATTCAGA
26041290 GGTTTATTTTATGTAATTCAGA
1 GGTTTATTTTATGTAATTCAGA
26041312 CCTTACGAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.05, G:0.18, T:0.50
Consensus pattern (22 bp):
GGTTTATTTTATGTAATTCAGA
Found at i:26050007 original size:25 final size:25
Alignment explanation
Indices: 26049968--26050016 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
26049958 TTATAATATG
** *
26049968 AAAAATGACTGTTTTGCCCCTAGGT
1 AAAAATGACCATTTTACCCCTAGGT
*
26049993 AAAAATGACCATTTTACCTCTAGG
1 AAAAATGACCATTTTACCCCTAGG
26050017 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (25 bp):
AAAAATGACCATTTTACCCCTAGGT
Found at i:26050201 original size:25 final size:26
Alignment explanation
Indices: 26050149--26050244 Score: 135
Period size: 26 Copynumber: 3.8 Consensus size: 26
26050139 GAGGAAGTGC
*
26050149 AAAAGGGC-TATGCCCCAG-TTACCG
1 AAAAGGGCTTTTGCCCCAGTTTACCG
26050173 AAAAGGGC-TTTGCCCCAGTTTACCG
1 AAAAGGGCTTTTGCCCCAGTTTACCG
* * *
26050198 AAAAGGGCTTTTGCTCCAGTTTATCA
1 AAAAGGGCTTTTGCCCCAGTTTACCG
26050224 AAAAGGGCTTTTGCCCCAGTT
1 AAAAGGGCTTTTGCCCCAGTT
26050245 ATTAAAAGAG
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
24 17 0.26
25 14 0.22
26 34 0.52
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTTTGCCCCAGTTTACCG
Found at i:26050518 original size:30 final size:30
Alignment explanation
Indices: 26050463--26050546 Score: 143
Period size: 30 Copynumber: 2.8 Consensus size: 30
26050453 ATTGTTGCAG
26050463 TAAAGGCTTCGGCCCAGTGATATGAATAATGA
1 TAAAGGCTTCGGCCCAGT-ATATGAATAAT-A
26050495 -AAAGGCTTCGGCCCAGTATATGAATAATA
1 TAAAGGCTTCGGCCCAGTATATGAATAATA
26050524 TAAAGGCTTCGGCCCAGTATATG
1 TAAAGGCTTCGGCCCAGTATATG
26050547 CTGAGATTGA
Statistics
Matches: 51, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
29 1 0.02
30 33 0.65
31 17 0.33
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (30 bp):
TAAAGGCTTCGGCCCAGTATATGAATAATA
Found at i:26052026 original size:11 final size:11
Alignment explanation
Indices: 26052010--26052035 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
26052000 AACTTTCGCT
26052010 TTTTAGTTTTA
1 TTTTAGTTTTA
26052021 TTTTAGTTTTA
1 TTTTAGTTTTA
26052032 TTTT
1 TTTT
26052036 GTGCGTCATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.00, G:0.08, T:0.77
Consensus pattern (11 bp):
TTTTAGTTTTA
Found at i:26053109 original size:22 final size:22
Alignment explanation
Indices: 26053084--26053127 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
26053074 AAAATAAGAA
*
26053084 AAAG-AGAGCTTAAAAAGAAATC
1 AAAGTAGAGCTCAAAAA-AAATC
*
26053106 AAAGTTGAGCTCAAAAAAAATC
1 AAAGTAGAGCTCAAAAAAAATC
26053128 TTTTAGTTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.57, C:0.11, G:0.16, T:0.16
Consensus pattern (22 bp):
AAAGTAGAGCTCAAAAAAAATC
Done.