Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 77 of 313
Found at i:26054169 original size:20 final size:19
Alignment explanation
Indices: 26054144--26054182 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
26054134 ATATGTGTAA
26054144 TAATAATAAACATATATATT
1 TAATAATAAA-ATATATATT
*
26054164 TAATAATAAAATATGTATT
1 TAATAATAAAATATATATT
26054183 GCTTATTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.41
Consensus pattern (19 bp):
TAATAATAAAATATATATT
Found at i:26054269 original size:12 final size:13
Alignment explanation
Indices: 26054240--26054268 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
26054230 CAAAACAAAT
26054240 AAAAA-GAATAGA
1 AAAAAGGAATAGA
26054252 AAAAAGGAATAGA
1 AAAAAGGAATAGA
26054265 AAAA
1 AAAA
26054269 GAAAAGAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.31
13 11 0.69
ACGTcount: A:0.76, C:0.00, G:0.17, T:0.07
Consensus pattern (13 bp):
AAAAAGGAATAGA
Found at i:26054319 original size:20 final size:20
Alignment explanation
Indices: 26054266--26054324 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
26054256 AGGAATAGAA
*
26054266 AAAGAAAA-GAGAATAGAACG
1 AAAGAAAAGGAGAA-AGAAAG
* *
26054286 AAA-CAAAGGGGAAAGAAAG
1 AAAGAAAAGGAGAAAGAAAG
26054305 AAAGAAAAGGAGAAAGAAAG
1 AAAGAAAAGGAGAAAGAAAG
26054325 GAGAAAAGTT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
19 11 0.34
20 21 0.66
ACGTcount: A:0.66, C:0.03, G:0.29, T:0.02
Consensus pattern (20 bp):
AAAGAAAAGGAGAAAGAAAG
Found at i:26055314 original size:40 final size:40
Alignment explanation
Indices: 26055256--26055334 Score: 106
Period size: 40 Copynumber: 2.0 Consensus size: 40
26055246 GGGTGCCAAT
26055256 TTACTTCGATTCAGCCGATAAGACACTAGGTGACAAATTA
1 TTACTTCGATTCAGCCGATAAGACACTAGGTGACAAATTA
* * * *
26055296 TTACTTCGAATT-ATCCGATGAGGCACTAGGTGCCAAATT
1 TTACTTCG-ATTCAGCCGATAAGACACTAGGTGACAAATT
26055335 GGTGTGTTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 31 0.91
41 3 0.09
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (40 bp):
TTACTTCGATTCAGCCGATAAGACACTAGGTGACAAATTA
Found at i:26058534 original size:772 final size:770
Alignment explanation
Indices: 26057051--26058593 Score: 2836
Period size: 772 Copynumber: 2.0 Consensus size: 770
26057041 TCCATAGTTC
26057051 TAGAAGTTATTTTTCTACATTTTTCTTCTTGTTCTTGTTGCTTCCATAGTTAGTTAAGTTAGTTA
1 TAGAAGTTATTTTTCTACATTTTTCTTCTTGTTCTTGTTGCTTCCATAGTTAGTTAAGTTAGTTA
26057116 CTACTGTAGCTTAGGTTTATTTGCACTTTTAACTCATCTCTTTTACTTGTAATGACATTTTACTT
66 CTACTGTAGCTTAGGTTTATTTGCACTTTTAACTCATCTCTTTTACTTGTAATGACATTTTACTT
26057181 TTGTTTAATGCTATTTCAGTTTCTTTTACTTTCGGTTGTTAAAAACCTTACCTTTAATGCTCACT
131 TTGTTTAATGCTATTTCAGTTTCTTTTACTTTCGGTTGTTAAAAACCTTACCTTTAATGCTCACT
26057246 TGTGTTTTATTTTGCTTCTAGTTTATCATCTTCATCTTCTTCTTTTTTCAAGTTTTATAGCTTAA
196 TGTGTTTTATTTTGCTTCTAGTTTATCATCTTCATCTTCTTCTTTTTTCAAGTTTTATAGCTTAA
*
26057311 AAATCCAAACTTTATTCTTTTTATTAAGCTTTACTTTCATGGTTGCAATGGTTTCTTCTTTCATG
261 AAATCCAAACTTTATTCTTTTTATTAAGCTTTACTTTCATGGTTACAATGGTTTCTTCTTTCATG
*
26057376 TTCATTAGCTTATTTTTTATATAGGTAACTAAACTTTTAAGGGGGTTGATTGATGGAGATACGGT
326 TTCATTAGCTTATTTTTTATATAGGTAACTAAACTTTTAAGGGGGTTGATTGATGGAGATACGCT
26057441 GAGCTAATTTTTGGATAATGGGCCAAATCGTAATAAATTAGACTAATTTGAATGAACCTAGAAAC
391 GAGCTAATTTTTGGATAATGGGCCAAATCGTAATAAATTAGACTAATTTGAATGAACCTAGAAAC
26057506 TTAGGATTAATGACCTTAAGGGAATATTTAAGCAAGTGAGATCGAAAGGATATCTTGTTGAGCAC
456 TTAGGATTAATGACCTTAAGGGAATATTTAAGCAAGTGAGATCGAAAGGATATCTTGTTGAGCAC
* * *
26057571 TAATTCGTTAGTTCCAGGTTAGCTAATGAGATCGAAAGAGAATCTGGATTAATTTGTCTAACTAG
521 TAATTCGTTAGTCCCAGGTTAGCCAATGAGATCAAAAGAGAATCTGGATTAATTTGTCTAACTAG
*
26057636 GTAAAGTTGAGAACGAGAGGTAAAATAGAGCCATTTTAGGAGTTTTAGCAATTTGGATCCCCAAT
586 GTAAAGTTGAAAACGAGAGGTAAAATAGAGCCATTTTAGGAGTTTTAGCAATTTGGATCCCCAAT
26057701 TCGAAGATTGGTAAACCACATTGAGATCAATCAACCACCATTTGTTTTTTATTTGTTAATTTCGT
651 TCGAAGATTGGTAAACCACATTGAGATCAATCAACCACCATTTGTTTTTTATTTGTTAATTTCGT
*
26057766 AATTTTACACGTTTTACAATTTAGTCCTTAATAGCTAGCTTGTAGAATAGTTTGA
716 AATTTTACACGTTTTACAATTTAGTCCTTAATAGCTAGCTCGTAGAATAGTTTGA
*
26057821 TAGAAGTTATTTTTCTACATTTTTCTTCTTGTTCTTGTTGCTTCCATAGTTAGTTAAGTTAGTTT
1 TAGAAGTTATTTTTCTACATTTTTCTTCTTGTTCTTGTTGCTTCCATAGTTAGTTAAGTTAGTTA
* * * *
26057886 CTACTGTAGGTTTGGTTTATTTTCACTTTTAACTTATCTCTTTTACTTGTAATGACATTTTACTC
66 CTACTGTAGCTTAGGTTTATTTGCACTTTTAACTCATCTCTTTTACTTGTAATGACATTTTACT-
*
26057951 TTTGTTTAATGCTATTTCAGTTTCTTTTACTTTCGGTTGTTAAAAACCTTACCTTTAATGCTTAC
130 TTTGTTTAATGCTATTTCAGTTTCTTTTACTTTCGGTTGTTAAAAACCTTACCTTTAATGCTCAC
*
26058016 TTGTGTTTTATTTTGCTTTTAGTTTATCATCTTCATCTTCTTCTTTTTTCAAGTTTTATAGCTTA
195 TTGTGTTTTATTTTGCTTCTAGTTTATCATCTTCATCTTCTTCTTTTTTCAAGTTTTATAGCTTA
*
26058081 AAAATCCGAACTTTATTCTTTTTATTAAGCTTTACTTTCATGGTTACAATGGTTTCTTCTTTCAT
260 AAAATCCAAACTTTATTCTTTTTATTAAGCTTTACTTTCATGGTTACAATGGTTTCTTCTTTCAT
*
26058146 GTTCATTAGCTTTATTTTTTATATAGGTAACTAAACTTTTAAGGGGGTTGATTGATGGAGATGCG
325 GTTCATTAGC-TTATTTTTTATATAGGTAACTAAACTTTTAAGGGGGTTGATTGATGGAGATACG
* *
26058211 CTGAGCTGATTTTTGGATAATGGGCCAGATCGTAATAAATTAGACTAATTTGAATGAACCTAGAA
389 CTGAGCTAATTTTTGGATAATGGGCCAAATCGTAATAAATTAGACTAATTTGAATGAACCTAGAA
26058276 ACTTAGGATTAATGACCTTAAGGGAATATTTAAGCAAGTGAGATCGAAAGGATATCTTGTTGAGC
454 ACTTAGGATTAATGACCTTAAGGGAATATTTAAGCAAGTGAGATCGAAAGGATATCTTGTTGAGC
*
26058341 ACTAATTCGTTAGTCCCAGGTTAGCCAATGAGATCAAAAGATAATCTGGATTAATTTGTCTAACT
519 ACTAATTCGTTAGTCCCAGGTTAGCCAATGAGATCAAAAGAGAATCTGGATTAATTTGTCTAACT
* *
26058406 TGGTAAAGTTGAAAATGAGAGGTAAAATAGAGCCATTTTCA-GAGTTTTAGCAATTTGGATCCCC
584 AGGTAAAGTTGAAAACGAGAGGTAAAATAGAGCCATTTT-AGGAGTTTTAGCAATTTGGATCCCC
* *
26058470 AATTCGAAGATTGGTAAACCACATTGAGATCAATCAACCACTATTTGTTTTTTATTTTTTAATTT
648 AATTCGAAGATTGGTAAACCACATTGAGATCAATCAACCACCATTTGTTTTTTATTTGTTAATTT
*
26058535 CGTAATTTTATACGTTTTACAATTTAGTCCTTAATAGCTAGCTCGTAGAATAGTTTGA
713 CGTAATTTTACACGTTTTACAATTTAGTCCTTAATAGCTAGCTCGTAGAATAGTTTGA
26058593 T
1 T
26058594 CCCTCTTGAC
Statistics
Matches: 746, Mismatches: 24, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
770 124 0.17
771 201 0.27
772 420 0.56
773 1 0.00
ACGTcount: A:0.27, C:0.14, G:0.16, T:0.43
Consensus pattern (770 bp):
TAGAAGTTATTTTTCTACATTTTTCTTCTTGTTCTTGTTGCTTCCATAGTTAGTTAAGTTAGTTA
CTACTGTAGCTTAGGTTTATTTGCACTTTTAACTCATCTCTTTTACTTGTAATGACATTTTACTT
TTGTTTAATGCTATTTCAGTTTCTTTTACTTTCGGTTGTTAAAAACCTTACCTTTAATGCTCACT
TGTGTTTTATTTTGCTTCTAGTTTATCATCTTCATCTTCTTCTTTTTTCAAGTTTTATAGCTTAA
AAATCCAAACTTTATTCTTTTTATTAAGCTTTACTTTCATGGTTACAATGGTTTCTTCTTTCATG
TTCATTAGCTTATTTTTTATATAGGTAACTAAACTTTTAAGGGGGTTGATTGATGGAGATACGCT
GAGCTAATTTTTGGATAATGGGCCAAATCGTAATAAATTAGACTAATTTGAATGAACCTAGAAAC
TTAGGATTAATGACCTTAAGGGAATATTTAAGCAAGTGAGATCGAAAGGATATCTTGTTGAGCAC
TAATTCGTTAGTCCCAGGTTAGCCAATGAGATCAAAAGAGAATCTGGATTAATTTGTCTAACTAG
GTAAAGTTGAAAACGAGAGGTAAAATAGAGCCATTTTAGGAGTTTTAGCAATTTGGATCCCCAAT
TCGAAGATTGGTAAACCACATTGAGATCAATCAACCACCATTTGTTTTTTATTTGTTAATTTCGT
AATTTTACACGTTTTACAATTTAGTCCTTAATAGCTAGCTCGTAGAATAGTTTGA
Found at i:26058903 original size:5 final size:5
Alignment explanation
Indices: 26058895--26058928 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
26058885 ATATAATGTT
26058895 ATATC ATATC ATATC ATATC ATATC ATATC ATAT
1 ATATC ATATC ATATC ATATC ATATC ATATC ATAT
26058929 ATTAGTAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (5 bp):
ATATC
Found at i:26061516 original size:33 final size:33
Alignment explanation
Indices: 26061479--26061542 Score: 110
Period size: 33 Copynumber: 1.9 Consensus size: 33
26061469 TTTCCGACCT
* *
26061479 GTATCTATCGTCGTACTCCACTCCTCCTGGCCC
1 GTATCAATCGCCGTACTCCACTCCTCCTGGCCC
26061512 GTATCAATCGCCGTACTCCACTCCTCCTGGC
1 GTATCAATCGCCGTACTCCACTCCTCCTGGC
26061543 TCAAGTTCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.14, C:0.42, G:0.16, T:0.28
Consensus pattern (33 bp):
GTATCAATCGCCGTACTCCACTCCTCCTGGCCC
Found at i:26064983 original size:27 final size:27
Alignment explanation
Indices: 26064941--26065018 Score: 111
Period size: 27 Copynumber: 2.9 Consensus size: 27
26064931 TGTGGGCCCC
* * *
26064941 ACCATTTGCACATCTGGGATAGGCACA
1 ACCATTTGCGCCTCTGAGATAGGCACA
26064968 ACCATTTGCGCCTCTGAGATAGGCACA
1 ACCATTTGCGCCTCTGAGATAGGCACA
* *
26064995 ACCATTTGCGCCTCAGAGAAAGGC
1 ACCATTTGCGCCTCTGAGATAGGC
26065019 TCGATTAGTC
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (27 bp):
ACCATTTGCGCCTCTGAGATAGGCACA
Found at i:26070722 original size:7 final size:7
Alignment explanation
Indices: 26070710--26070737 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
26070700 AGTTGAATCA
26070710 TTTTTAT
1 TTTTTAT
26070717 TTTTTAT
1 TTTTTAT
26070724 TTTTTAT
1 TTTTTAT
26070731 TTTTTAT
1 TTTTTAT
26070738 GCTCTCTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (7 bp):
TTTTTAT
Found at i:26070826 original size:20 final size:20
Alignment explanation
Indices: 26070801--26070866 Score: 57
Period size: 20 Copynumber: 3.2 Consensus size: 20
26070791 AAGTAAAATT
26070801 CTTATGTACTAAAGATTAGA
1 CTTATGTACTAAAGATTAGA
* *
26070821 CTTATGT-TTAGAAGTAAATT--T
1 CTTATGTACTA-AAG---ATTAGA
26070842 CTTATGTACTAAAGATTAGA
1 CTTATGTACTAAAGATTAGA
26070862 CTTAT
1 CTTAT
26070867 CATTCATTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 14
0.66 0.08 0.26
Matches are distributed among these distances:
18 3 0.09
19 2 0.06
20 15 0.43
21 10 0.29
22 2 0.06
23 3 0.09
ACGTcount: A:0.36, C:0.09, G:0.14, T:0.41
Consensus pattern (20 bp):
CTTATGTACTAAAGATTAGA
Found at i:26070829 original size:41 final size:41
Alignment explanation
Indices: 26070784--26070866 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
26070774 ATTGTTATCT
26070784 TGTTTAGAAGTAAAATTCTTATGTACTAAAGATTAGACTTA
1 TGTTTAGAAGTAAAATTCTTATGTACTAAAGATTAGACTTA
*
26070825 TGTTTAGAAGTAAATTTCTTATGTACTAAAGATTAGACTTA
1 TGTTTAGAAGTAAAATTCTTATGTACTAAAGATTAGACTTA
26070866 T
1 T
26070867 CATTCATTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.37, C:0.07, G:0.14, T:0.41
Consensus pattern (41 bp):
TGTTTAGAAGTAAAATTCTTATGTACTAAAGATTAGACTTA
Found at i:26071183 original size:24 final size:24
Alignment explanation
Indices: 26071133--26071183 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
26071123 ACAAATTTAA
* *
26071133 TTATCATATCACATGTCCATATAT
1 TTATCACATCACATGTCCATACAT
* * *
26071157 TTATCACATCGCATGTCTATACGT
1 TTATCACATCACATGTCCATACAT
26071181 TTA
1 TTA
26071184 AAGCTTTTCA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (24 bp):
TTATCACATCACATGTCCATACAT
Found at i:26082493 original size:26 final size:26
Alignment explanation
Indices: 26082464--26082517 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
26082454 TGGGAAAATG
26082464 GAGACTTCACTAATGAGCAAATAATT
1 GAGACTTCACTAATGAGCAAATAATT
26082490 GAGACTTCACTAATGAGCAAATAATT
1 GAGACTTCACTAATGAGCAAATAATT
26082516 GA
1 GA
26082518 AGGGCACAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.43, C:0.15, G:0.17, T:0.26
Consensus pattern (26 bp):
GAGACTTCACTAATGAGCAAATAATT
Found at i:26083280 original size:20 final size:20
Alignment explanation
Indices: 26083255--26083293 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
26083245 TTTTTATTGT
*
26083255 TAATTTTTTTAATTTTCTCA
1 TAATTTTTTGAATTTTCTCA
26083275 TAATTTTTTGAATTTTCTC
1 TAATTTTTTGAATTTTCTC
26083294 TTTTTTCATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.23, C:0.10, G:0.03, T:0.64
Consensus pattern (20 bp):
TAATTTTTTGAATTTTCTCA
Found at i:26086723 original size:17 final size:17
Alignment explanation
Indices: 26086697--26086737 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
26086687 TAACTCTCTA
* *
26086697 TTTAATTTAAAGATAATT
1 TTTAATTAAAACAT-ATT
26086715 TTTAATTAAAACATATT
1 TTTAATTAAAACATATT
26086732 TTTAAT
1 TTTAAT
26086738 GTTTTATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (17 bp):
TTTAATTAAAACATATT
Found at i:26094687 original size:16 final size:16
Alignment explanation
Indices: 26094649--26094687 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
26094639 TGAATTACTT
* *
26094649 ATTACAACTCTATTCC
1 ATTACAGCTCTATTCA
26094665 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCA
26094681 ATTACAG
1 ATTACAG
26094688 TGAACCAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.33, C:0.26, G:0.05, T:0.36
Consensus pattern (16 bp):
ATTACAGCTCTATTCA
Found at i:26105820 original size:16 final size:16
Alignment explanation
Indices: 26105799--26105840 Score: 75
Period size: 16 Copynumber: 2.6 Consensus size: 16
26105789 TGAGCCAATA
26105799 TTTGTTTCCATTTTGC
1 TTTGTTTCCATTTTGC
26105815 TTTGTTTCCATTTTGC
1 TTTGTTTCCATTTTGC
*
26105831 TTTGCTTCCA
1 TTTGTTTCCA
26105841 AAAACCATTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.07, C:0.21, G:0.12, T:0.60
Consensus pattern (16 bp):
TTTGTTTCCATTTTGC
Found at i:26106906 original size:22 final size:24
Alignment explanation
Indices: 26106881--26106926 Score: 78
Period size: 22 Copynumber: 2.0 Consensus size: 24
26106871 TTATGATTTT
26106881 TAAAATATATTTA-TTAA-TAAAA
1 TAAAATATATTTATTTAATTAAAA
26106903 TAAAATATATTTATTTAATTAAAA
1 TAAAATATATTTATTTAATTAAAA
26106927 ATTTAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 13 0.59
23 4 0.18
24 5 0.23
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (24 bp):
TAAAATATATTTATTTAATTAAAA
Found at i:26108514 original size:29 final size:29
Alignment explanation
Indices: 26108452--26108507 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
26108442 GGCTGGCCCG
*
26108452 TGTGGTCCAAAAGACCTAGCACACGGCTC
1 TGTGGTCCAAAAGACCTAGCACACGACTC
* * *
26108481 TGTGGTCCACAAGACCTGGCATACGAC
1 TGTGGTCCAAAAGACCTAGCACACGAC
26108508 CATGTGGCTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.27, C:0.30, G:0.25, T:0.18
Consensus pattern (29 bp):
TGTGGTCCAAAAGACCTAGCACACGACTC
Found at i:26122281 original size:12 final size:12
Alignment explanation
Indices: 26122264--26122288 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26122254 CAGAATTAAA
26122264 ATTAGATGAAGC
1 ATTAGATGAAGC
26122276 ATTAGATGAAGC
1 ATTAGATGAAGC
26122288 A
1 A
26122289 GAATGGATAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.08, G:0.24, T:0.24
Consensus pattern (12 bp):
ATTAGATGAAGC
Found at i:26124165 original size:176 final size:176
Alignment explanation
Indices: 26123871--26124440 Score: 781
Period size: 176 Copynumber: 3.2 Consensus size: 176
26123861 ATTAGTAGAT
* * *
26123871 TGGTGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTACTACTAGCCTTATCTCTCTGAG
1 TGGTGAATCTTATCTCCATGTATCGACAATGGAGCAGATTTTACCACCAGCCTTATCTCTCTGAG
* * * *
26123936 GTAGCAAGAGAGCAGGTTGAAGAATGAGTCTTAACTTTCTGAGGTAGCAAGAAAGTAGACTAATG
66 GTAGCAAGAGAGCAAGTTGAAGAATGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTAAAG
* *
26124001 ATTGAAGATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATGGAAGA
131 ATTGAAGATCTTATCTCCCTGAAGTTGCAGCGGAGCAAATCGAAGA
*
26124047 TGGTGAATCTGATCTCCATGTATCGACAATGGAGCAGATTTTACCACCAGCCTTATCTCTCTGAG
1 TGGTGAATCTTATCTCCATGTATCGACAATGGAGCAGATTTTACCACCAGCCTTATCTCTCTGAG
* *
26124112 GTAGCAAGAGAGCAAGTTGAAGAATGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAGG
66 GTAGCAAGAGAGCAAGTTGAAGAATGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTAAAG
*
26124177 ATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAAATCGAAGA
131 ATTGAAGATCTTATCTCCCTGAAGTTGCAGCGGAGCAAATCGAAGA
* *
26124223 TGGTGAATCTTATCTCCATGTATC-AGCAATGGAGCAGATTTAAGCCACCAGCCTTATTTCTCTG
1 TGGTGAATCTTATCTCCATGTATCGA-CAATGGAGCAGATTTTA-CCACCAGCCTTATCTCTCTG
* * * *
26124287 AGGTAGCAAGAGA--ATAGTTGAAGCATAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTA
64 AGGTAGCAAGAGAGCA-AGTTGAAGAATGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTA
* * ** * * *
26124350 AAGATTGAAGATCTTATTTCTCT-AAGCAGTAGCGGAACAGATCGAAAGA
128 AAGATTGAAGATCTTATCTCCCTGAAGTTGCAGCGGAGCAAATCG-AAGA
* * * *
26124399 -GGCGAATCTTATCTCCATATATATCGGCAATGGAGCATATTT
1 TGGTGAATCTTATCTCC--ATGTATCGACAATGGAGCAGATTT
26124441 AAGCCCCAAG
Statistics
Matches: 354, Mismatches: 33, Indels: 13
0.88 0.08 0.03
Matches are distributed among these distances:
175 33 0.09
176 269 0.76
177 52 0.15
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (176 bp):
TGGTGAATCTTATCTCCATGTATCGACAATGGAGCAGATTTTACCACCAGCCTTATCTCTCTGAG
GTAGCAAGAGAGCAAGTTGAAGAATGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTAAAG
ATTGAAGATCTTATCTCCCTGAAGTTGCAGCGGAGCAAATCGAAGA
Found at i:26127043 original size:14 final size:16
Alignment explanation
Indices: 26127012--26127043 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
26127002 ATAGTGGTAC
26127012 TTAATTGTTGGATTTA
1 TTAATTGTTGGATTTA
26127028 TTAATTG-TGG-TTTA
1 TTAATTGTTGGATTTA
26127042 TT
1 TT
26127044 GTACTTTATG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 3 0.19
16 7 0.44
ACGTcount: A:0.22, C:0.00, G:0.19, T:0.59
Consensus pattern (16 bp):
TTAATTGTTGGATTTA
Found at i:26132599 original size:18 final size:17
Alignment explanation
Indices: 26132569--26132602 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
26132559 TAACTGCAAA
26132569 TTTAAATTATAATTATT
1 TTTAAATTATAATTATT
26132586 TTTAAATGTATAATTAT
1 TTTAAAT-TATAATTAT
26132603 CACAACTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (17 bp):
TTTAAATTATAATTATT
Found at i:26134404 original size:40 final size:43
Alignment explanation
Indices: 26134355--26134456 Score: 140
Period size: 43 Copynumber: 2.4 Consensus size: 43
26134345 AGAATTTTAA
*
26134355 TATTTGGTTACAAAGTTGGGTACA-C-ACGCA-TATAA-ACAAG
1 TATTTGGTTACAAAGTTGGGTACACCTACGCACAATAACA-AAG
* *
26134395 TATTTGGTTATAAAGTTGGGTACACCTACGCACAATTACAAAG
1 TATTTGGTTACAAAGTTGGGTACACCTACGCACAATAACAAAG
26134438 TATTTGGTTACAAAGTTGG
1 TATTTGGTTACAAAGTTGG
26134457 AATTTCAATA
Statistics
Matches: 54, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
40 23 0.43
41 1 0.02
42 5 0.09
43 24 0.44
44 1 0.02
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (43 bp):
TATTTGGTTACAAAGTTGGGTACACCTACGCACAATAACAAAG
Found at i:26134453 original size:43 final size:40
Alignment explanation
Indices: 26134355--26134456 Score: 134
Period size: 40 Copynumber: 2.5 Consensus size: 40
26134345 AGAATTTTAA
*
26134355 TATTTGGTTACAAAGTTGGGTACACACGCATATAAACAAG
1 TATTTGGTTACAAAGTTGGGTACACACGCAAATAAACAAG
* *
26134395 TATTTGGTTATAAAGTTGGGTACACCTACGCACAAT-TACAAAG
1 TATTTGGTTACAAAGTTGGGTACA-C-ACGCA-AATAAAC-AAG
26134438 TATTTGGTTACAAAGTTGG
1 TATTTGGTTACAAAGTTGG
26134457 AATTTCAATA
Statistics
Matches: 54, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
40 23 0.43
41 1 0.02
42 7 0.13
43 23 0.43
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (40 bp):
TATTTGGTTACAAAGTTGGGTACACACGCAAATAAACAAG
Found at i:26134589 original size:20 final size:20
Alignment explanation
Indices: 26134564--26134633 Score: 72
Period size: 20 Copynumber: 3.5 Consensus size: 20
26134554 TATAATATAT
*
26134564 AACATATCTAAATATATAAC
1 AACATATCTATATATATAAC
*
26134584 AACATATCTATTTATATAAC
1 AACATATCTATATATATAAC
* *
26134604 TACCAAAATCT-TAT-TATAAC
1 -AAC-ATATCTATATATATAAC
26134624 AACATATCTA
1 AACATATCTA
26134634 CTTATATGAG
Statistics
Matches: 40, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
18 5 0.12
19 2 0.05
20 24 0.60
21 4 0.10
22 5 0.12
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34
Consensus pattern (20 bp):
AACATATCTATATATATAAC
Found at i:26134697 original size:58 final size:58
Alignment explanation
Indices: 26134594--26134747 Score: 170
Period size: 58 Copynumber: 2.7 Consensus size: 58
26134584 AACATATCTA
* * * *
26134594 TTTATATAACTACCAAAATCT-T-AT-TATAACAACATATCTACTTATATGAGAATAT
1 TTTATATAAATACTAAAATCTATAATATATAACAACATATCAACTTATATAAGAATAT
* * * *
26134649 TTTATACAAATACTAAAATCTATAATATATACCAACATATCAATTTATATAATAATAT
1 TTTATATAAATACTAAAATCTATAATATATAACAACATATCAACTTATATAAGAATAT
** * * *
26134707 TTTATATGGATAATAAAATTTATAATATATAGCAACATATC
1 TTTATATAAATACTAAAATCTATAATATATAACAACATATC
26134748 TAACATCTTC
Statistics
Matches: 82, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
55 18 0.22
56 1 0.01
57 2 0.02
58 61 0.74
ACGTcount: A:0.47, C:0.12, G:0.03, T:0.38
Consensus pattern (58 bp):
TTTATATAAATACTAAAATCTATAATATATAACAACATATCAACTTATATAAGAATAT
Found at i:26135249 original size:14 final size:14
Alignment explanation
Indices: 26135230--26135257 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
26135220 CCTAGTTAAG
26135230 GTTTTTCATGTGTA
1 GTTTTTCATGTGTA
26135244 GTTTTTCATGTGTA
1 GTTTTTCATGTGTA
26135258 ATTTAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.07, G:0.21, T:0.57
Consensus pattern (14 bp):
GTTTTTCATGTGTA
Found at i:26137110 original size:31 final size:30
Alignment explanation
Indices: 26137075--26137139 Score: 78
Period size: 30 Copynumber: 2.1 Consensus size: 30
26137065 TGTTCAAAAA
26137075 TTAATAAAATATTT-AAAATATTTTTTATAAT
1 TTAATAAAAT-TTTAAAAATA-TTTTTATAAT
** *
26137106 TTAATTTAATTTTAAAAATATTTTTATATT
1 TTAATAAAATTTTAAAAATATTTTTATAAT
26137136 TTAA
1 TTAA
26137140 ATTGAATTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
30 16 0.53
31 14 0.47
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (30 bp):
TTAATAAAATTTTAAAAATATTTTTATAAT
Found at i:26137148 original size:31 final size:31
Alignment explanation
Indices: 26137089--26137149 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
26137079 TAAAATATTT
*
26137089 AAAATATTTTTTATAATTTAATTTAATTTTA
1 AAAATATTTTTTATAATTTAATTGAATTTTA
*
26137120 AAAATA-TTTTTATATTTTAAATTGAATTTT
1 AAAATATTTTTTATAATTT-AATTGAATTTT
26137150 GGTTAAGCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 11 0.41
31 16 0.59
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (31 bp):
AAAATATTTTTTATAATTTAATTGAATTTTA
Found at i:26142549 original size:13 final size:13
Alignment explanation
Indices: 26142528--26142572 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
26142518 AAATTTTTTC
26142528 AAAGCACTTCTCA
1 AAAGCACTTCTCA
* * *
26142541 AAAGTACTTTTCC
1 AAAGCACTTCTCA
*
26142554 ACAGCACTTCTCA
1 AAAGCACTTCTCA
26142567 AAAGCA
1 AAAGCA
26142573 ATTAAGAACT
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.38, C:0.29, G:0.09, T:0.24
Consensus pattern (13 bp):
AAAGCACTTCTCA
Found at i:26143782 original size:21 final size:23
Alignment explanation
Indices: 26143740--26143787 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 23
26143730 TATATTTTAT
** *
26143740 ATTTTTTTTACTTAGAGTTTAA-
1 ATTTTTTTTACAAAAAGTTTAAC
26143762 ATTTTTTTTACAAAAAG-TTAAC
1 ATTTTTTTTACAAAAAGTTTAAC
26143784 ATTT
1 ATTT
26143788 GTTATATTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.33, C:0.06, G:0.06, T:0.54
Consensus pattern (23 bp):
ATTTTTTTTACAAAAAGTTTAAC
Found at i:26143787 original size:22 final size:22
Alignment explanation
Indices: 26143735--26143780 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
26143725 TAAACTATAT
* ** *
26143735 TTTATATTTTTTTTACTTAGAG
1 TTTAAATTTTTTTTACAAAAAG
26143757 TTTAAATTTTTTTTACAAAAAG
1 TTTAAATTTTTTTTACAAAAAG
26143779 TT
1 TT
26143781 AACATTTGTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.30, C:0.04, G:0.07, T:0.59
Consensus pattern (22 bp):
TTTAAATTTTTTTTACAAAAAG
Found at i:26146683 original size:15 final size:16
Alignment explanation
Indices: 26146663--26146697 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
26146653 TTGAGTTTTG
26146663 TATTTACTATTA-TAT
1 TATTTACTATTAGTAT
*
26146678 TATTTATTATTAGTAT
1 TATTTACTATTAGTAT
26146694 TATT
1 TATT
26146698 ATTTTCATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 11 0.61
16 7 0.39
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (16 bp):
TATTTACTATTAGTAT
Found at i:26146786 original size:6 final size:6
Alignment explanation
Indices: 26146775--26146803 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
26146765 ATTATTAACC
26146775 TTTTAT TTTTAT TTTTAT TTTTAT TTTTA
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTA
26146804 GCATATTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTAT
Found at i:26146833 original size:3 final size:3
Alignment explanation
Indices: 26146818--26147030 Score: 61
Period size: 3 Copynumber: 71.0 Consensus size: 3
26146808 ATTATTAAGT
* * * *
26146818 TTA TTA ATA -TA TTA TTA TTA TTA TCT- TCTA TT- TTG TTG TTG TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA T-TA T-TA TTA TTA TTA TTA TTA
* ** * * * **
26146862 TTA TTA TTT TTA TCG TTA CTA TTA -TA TTTA TGA TTA TTG TTA GCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA
* * *
26146907 TTA TT- TTA TTA TTA CTA TTA TTA -TA TTA TTA -AA TTAA TTAA TTC
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TT-A TTA
* * *
26146951 TGTA TTA TT- TTCA TTA CCTTA TATA TT- TTC TTT TTA -TA TTTA CTA
1 T-TA TTA TTA TT-A TTA --TTA T-TA TTA TTA TTA TTA TTA -TTA TTA
** *
26146996 CGA TTA TTA TTA CTA TTA TTA TT- TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
26147031 CCTACATACT
Statistics
Matches: 158, Mismatches: 32, Indels: 40
0.69 0.14 0.17
Matches are distributed among these distances:
2 19 0.12
3 116 0.73
4 20 0.13
5 3 0.02
ACGTcount: A:0.29, C:0.07, G:0.04, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:26150853 original size:19 final size:19
Alignment explanation
Indices: 26150829--26150875 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
26150819 TCTTTTTAGT
*
26150829 TTTGCATT-CATCTCATGCA
1 TTTGCATTACATCACAT-CA
26150848 TTTGCATTACATCACATCA
1 TTTGCATTACATCACATCA
*
26150867 TGTGCATTA
1 TTTGCATTA
26150876 AATTTTACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.26, C:0.23, G:0.11, T:0.40
Consensus pattern (19 bp):
TTTGCATTACATCACATCA
Found at i:26151980 original size:15 final size:14
Alignment explanation
Indices: 26151912--26151994 Score: 55
Period size: 14 Copynumber: 5.8 Consensus size: 14
26151902 TTATTGCTAT
26151912 TATTTTTATGTT-TC
1 TATTTTTAT-TTATC
*
26151926 TATTTATATTTAT-
1 TATTTTTATTTATC
*
26151939 T-TTGTTATTCTAATAC
1 TATTTTTATT-T-AT-C
* *
26151955 TATTATTATTTGTC
1 TATTTTTATTTATC
26151969 TAATTTTTATTTATC
1 T-ATTTTTATTTATC
*
26151984 TATTTATATTT
1 TATTTTTATTT
26151995 CTACTTATTA
Statistics
Matches: 54, Mismatches: 8, Indels: 14
0.71 0.11 0.18
Matches are distributed among these distances:
12 6 0.11
13 4 0.07
14 22 0.41
15 13 0.24
16 2 0.04
17 7 0.13
ACGTcount: A:0.24, C:0.06, G:0.04, T:0.66
Consensus pattern (14 bp):
TATTTTTATTTATC
Found at i:26152014 original size:21 final size:21
Alignment explanation
Indices: 26151984--26152023 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
26151974 TTTATTTATC
26151984 TATTTATATTTCTACTTATTA
1 TATTTATATTTCTACTTATTA
* *
26152005 TATTTTTATTTCTATTTAT
1 TATTTATATTTCTACTTAT
26152024 ATACTAATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.07, G:0.00, T:0.68
Consensus pattern (21 bp):
TATTTATATTTCTACTTATTA
Found at i:26154061 original size:5 final size:5
Alignment explanation
Indices: 26154032--26154072 Score: 50
Period size: 5 Copynumber: 8.4 Consensus size: 5
26154022 TTTCTTTCTT
*
26154032 TTGCA TT-CA TTCCA -TGCA TTTGCA TTGCA TTGCA TTGCA TT
1 TTGCA TTGCA TTGCA TTGCA -TTGCA TTGCA TTGCA TTGCA TT
26154073 ATTGTATCAT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
4 7 0.22
5 21 0.66
6 4 0.12
ACGTcount: A:0.20, C:0.22, G:0.15, T:0.44
Consensus pattern (5 bp):
TTGCA
Found at i:26158309 original size:33 final size:33
Alignment explanation
Indices: 26158267--26158332 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
26158257 ATGGATAACG
26158267 AGTGATGACACTTTAAGATTTTAAAAATCATTC
1 AGTGATGACACTTTAAGATTTTAAAAATCATTC
26158300 AGTGATGACACTTTAAGATTTTAAAAATCATTC
1 AGTGATGACACTTTAAGATTTTAAAAATCATTC
26158333 TCATGACATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36
Consensus pattern (33 bp):
AGTGATGACACTTTAAGATTTTAAAAATCATTC
Found at i:26158838 original size:85 final size:85
Alignment explanation
Indices: 26158727--26159334 Score: 842
Period size: 85 Copynumber: 7.1 Consensus size: 85
26158717 GCTGAAGATA
*
26158727 CGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATACAGATCTTATCCCTAAACAGTA
1 CGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATACAGATCTTATCCCTAAACAGTA
*
26158792 GTGGAACAGATCGAAGACAG
66 GTGGAGCAGATCGAAGACAG
* * *
26158812 CGAGCCTTAACCCCCTAAGCAATAGGGTAACAAGCTAAAAATACAGATCTTATCCCTAAACAGTA
1 CGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATACAGATCTTATCCCTAAACAGTA
* * *
26158877 GTGGAACAGATCAAAGACAA
66 GTGGAGCAGATCGAAGACAG
* * * *
26158897 CGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGATGGAAATATAGATCTTATCCCTAAACAATA
1 CGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATACAGATCTTATCCCTAAACAGTA
* *
26158962 GTGGAGCAGATTGAAGATAG
66 GTGGAGCAGATCGAAGACAG
* * *
26158982 CAAGCCTTAACCCTCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTTATCCCTAAACAAT
1 CGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCT-GAAAATACAGATCTTATCCCTAAACAGT
*
26159047 AGTGGAGCAGATCGAAGACGG
65 AGTGGAGCAGATCGAAGACAG
** *
26159068 TAAGCCTTAA-CCCCTAAGTAGTAGGGTAACAGGCTGGAAAATACAGATCTTATCCCTAAACAGT
1 CGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCT-GAAAATACAGATCTTATCCCTAAACAGT
* *
26159132 AATGGAGCATATCGAAGACAG
65 AGTGGAGCAGATCGAAGACAG
26159153 CGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATACAGATCTTATCCCTAAACAGTA
1 CGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATACAGATCTTATCCCTAAACAGTA
*
26159218 GTAGAGCAGATCGAAGACAG
66 GTGGAGCAGATCGAAGACAG
* * * ** *
26159238 TGAGCCTTAACCCCCTAAACAATAGGGTAACAGGCTG-AGTTACAGATCTTATCTCCCTAAGCAG
1 CGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATACAGATCTTA--TCCCTAAACAG
* * * * *
26159302 TAATAGAGTAGATCGAGGATAG
64 TAGTGGAGCAGATCGAAGACAG
*
26159324 TGAGCCTTAAC
1 CGAGCCTTAAC
26159335 AGTAGGGTAA
Statistics
Matches: 472, Mismatches: 47, Indels: 7
0.90 0.09 0.01
Matches are distributed among these distances:
84 12 0.03
85 344 0.73
86 116 0.25
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.20
Consensus pattern (85 bp):
CGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATACAGATCTTATCCCTAAACAGTA
GTGGAGCAGATCGAAGACAG
Found at i:26159081 original size:256 final size:255
Alignment explanation
Indices: 26158719--26159290 Score: 844
Period size: 256 Copynumber: 2.2 Consensus size: 255
26158709 GGGAGCAAGC
*
26158719 TGAAGATA-CGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATACAGATCTTATCCC
1 TGAAGATAGCGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATACAGATCTTATCCC
* *
26158783 TAAACAGTAGTGGAACAGATCGAAGACAGCGAGCCTTAACCCCCTAAGCAATAGGGTAACAAGCT
66 TAAACAATAGTGGAACAGATCGAAGACAGCAAGCCTTAA-CCCCTAAGCAATAGGGTAACAAGCT
*
26158848 -AAAAATACAGATCTTATCCCTAAACAGTAGTGGAACAGATCAAAGACAACGAGCCTTAACCCCC
130 GAAAAATACAGATCTTATCCCTAAACAGTAATGGAACAGATCAAAGACAACGAGCCTTAACCCCC
* * *
26158912 TAAGCAGTAGGGTAACAGGATGGAAATATAGATCTTATCCCTAAACAATAGTGGAGCAGAT
195 TAAGCAGTAGGGTAACAGGATGAAAATACAGATCTTATCCCTAAACAATAGTAGAGCAGAT
* *
26158973 TGAAGATAGCAAGCCTTAACCCTCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTTATCC
1 TGAAGATAGCGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCT-GAAAATACAGATCTTATCC
* * * * * *
26159038 CTAAACAATAGTGGAGCAGATCGAAGACGGTAAGCCTTAACCCCTAAGTAGTAGGGTAACAGGCT
65 CTAAACAATAGTGGAACAGATCGAAGACAGCAAGCCTTAACCCCTAAGCAATAGGGTAACAAGCT
* * * * *
26159103 GGAAAATACAGATCTTATCCCTAAACAGTAATGGAGCATATCGAAGACAGCGAGCCTTAACCCCC
130 GAAAAATACAGATCTTATCCCTAAACAGTAATGGAACAGATCAAAGACAACGAGCCTTAACCCCC
* *
26159168 TAAGCAGTAGGGTAACAGGCTGAAAATACAGATCTTATCCCTAAACAGTAGTAGAGCAGAT
195 TAAGCAGTAGGGTAACAGGATGAAAATACAGATCTTATCCCTAAACAATAGTAGAGCAGAT
* * * * * **
26159229 CGAAGACAGTGAGCCTTAACCCCCTAAACAATAGGGTAACAGGCTG-AGTTACAGATCTTATC
1 TGAAGATAGCGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATACAGATCTTATC
26159291 TCCCTAAGCA
Statistics
Matches: 284, Mismatches: 31, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
254 22 0.08
255 57 0.20
256 205 0.72
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.20
Consensus pattern (255 bp):
TGAAGATAGCGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATACAGATCTTATCCC
TAAACAATAGTGGAACAGATCGAAGACAGCAAGCCTTAACCCCTAAGCAATAGGGTAACAAGCTG
AAAAATACAGATCTTATCCCTAAACAGTAATGGAACAGATCAAAGACAACGAGCCTTAACCCCCT
AAGCAGTAGGGTAACAGGATGAAAATACAGATCTTATCCCTAAACAATAGTAGAGCAGAT
Found at i:26159126 original size:42 final size:42
Alignment explanation
Indices: 26158739--26159218 Score: 156
Period size: 41 Copynumber: 11.3 Consensus size: 42
26158729 AGCCTTAACC
*
26158739 CCCTAAGCAGTAGGGTAACAGGCT-AAAAATACAGATCTTAT
1 CCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTTAT
* * * * * * *
26158780 CCCTAAACAGTAGTGG-AACA-GATCGAAGACAGC-GAGCCTTAACC
1 CCCTAAGCAGTAG-GGTAACAGGCTGGAAAATA-CAGA-TCTT-A-T
* * *
26158824 CCCTAAGCAATAGGGTAACAAGCT-AAAAATACAGATCTTAT
1 CCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTTAT
* * * * * *
26158865 CCCTAAACAGTAGTGG-AACA-GAT--CAAAGACAACGAGCCTTAACC
1 CCCTAAGCAGTAG-GGTAACAGGCTGGAAAATAC-A-GA-TCTT-A-T
* *
26158909 CCCTAAGCAGTAGGGTAACAGGATGG-AAATATAGATCTTAT
1 CCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTTAT
* * * * * * * *
26158950 CCCTAAACAATAGTGG-AGCA-GATTGAAGATAGCA-AGCCTTAAC
1 CCCTAAGCAGTAG-GGTAACAGGCTGGAAAATA-CAGA-TCTT-AT
26158993 CCTCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTTAT
1 CC-CTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTTAT
* * * * * * * *
26159036 CCCTAAACAATAGTGG-AGCA-GATCGAAGACGGTA-AG-CCTTAAC
1 CCCTAAGCAGTAG-GGTAACAGGCTGGAA-A--ATACAGATCTT-AT
*
26159079 CCCTAAGTAGTAGGGTAACAGGCTGGAAAATACAGATCTTAT
1 CCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTTAT
* * * ** * * * * *
26159121 CCCTAAACAGTAATGG-AGCA-TATCGAAGACAGC-GAGCCTTAACC
1 CCCTAAGCAGT-AGGGTAACAGGCTGGAAAATA-CAGA-TCTT-A-T
26159165 CCCTAAGCAGTAGGGTAACAGGCT-GAAAATACAGATCTTAT
1 CCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTTAT
*
26159206 CCCTAAACAGTAG
1 CCCTAAGCAGTAG
26159219 TAGAGCAGAT
Statistics
Matches: 313, Mismatches: 81, Indels: 90
0.65 0.17 0.19
Matches are distributed among these distances:
39 5 0.02
40 9 0.03
41 85 0.27
42 57 0.18
43 54 0.17
44 83 0.27
45 16 0.05
46 4 0.01
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.19
Consensus pattern (42 bp):
CCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTTAT
Found at i:26162333 original size:36 final size:33
Alignment explanation
Indices: 26162293--26162364 Score: 81
Period size: 35 Copynumber: 2.1 Consensus size: 33
26162283 ACTTTTGGTA
*
26162293 TTCCTACTTCAATTTGAAATTGGATTATTCTCTCTT
1 TTCCTACTTCAA-TTGAAATTGAATTATT-T-TCTT
* * *
26162329 TTCCTATTTCCATTGGAATTGAATTATTTTCTT
1 TTCCTACTTCAATTGAAATTGAATTATTTTCTT
26162362 TTC
1 TTC
26162365 TCTTTCAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
33 7 0.22
34 1 0.03
35 14 0.44
36 10 0.31
ACGTcount: A:0.21, C:0.18, G:0.08, T:0.53
Consensus pattern (33 bp):
TTCCTACTTCAATTGAAATTGAATTATTTTCTT
Found at i:26162789 original size:29 final size:28
Alignment explanation
Indices: 26162746--26162819 Score: 71
Period size: 29 Copynumber: 2.6 Consensus size: 28
26162736 TTTCGATTTC
26162746 TATTTATTT-TGTTATTCTAATACTATTAT
1 TATTTATTTAT-TTATT-TAATACTATTAT
**
26162775 TATTTATTTATTTATATTTCTACTATTAT
1 TATTTATTTATTTAT-TTAATACTATTAT
*
26162804 TATATT-TCTATTTATT
1 TAT-TTATTTATTTATT
26162820 ATATTTTTCT
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
28 1 0.03
29 34 0.87
30 4 0.10
ACGTcount: A:0.27, C:0.07, G:0.01, T:0.65
Consensus pattern (28 bp):
TATTTATTTATTTATTTAATACTATTAT
Found at i:26162805 original size:32 final size:32
Alignment explanation
Indices: 26162741--26162825 Score: 84
Period size: 32 Copynumber: 2.6 Consensus size: 32
26162731 TTATGTTTCG
* *
26162741 ATTTCTATTTATTTTGTTATTCTAATACTATTAT
1 ATTTCTATTTATTAT-AT-TTCTAATACTATTAT
* *
26162775 -TATT-TATTTATTTATATTTCTACTATTATTAT
1 AT-TTCTATTTA-TTATATTTCTAATACTATTAT
26162807 ATTTCTATTTATTATATTT
1 ATTTCTATTTATTATATTT
26162826 TTCTTTCTAT
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
32 23 0.53
33 15 0.35
34 5 0.12
ACGTcount: A:0.27, C:0.07, G:0.01, T:0.65
Consensus pattern (32 bp):
ATTTCTATTTATTATATTTCTAATACTATTAT
Found at i:26162806 original size:17 final size:15
Alignment explanation
Indices: 26162779--26162825 Score: 67
Period size: 17 Copynumber: 2.9 Consensus size: 15
26162769 TATTATTATT
26162779 TATTTATTTATATTTC
1 TATTTA-TTATATTTC
26162795 TACTATTATTATATTTC
1 TA-T-TTATTATATTTC
26162812 TATTTATTATATTT
1 TATTTATTATATTT
26162826 TTCTTTCTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
15 11 0.38
16 3 0.10
17 12 0.41
18 3 0.10
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (15 bp):
TATTTATTATATTTC
Found at i:26162829 original size:17 final size:16
Alignment explanation
Indices: 26162779--26162826 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 16
26162769 TATTATTATT
26162779 TATTTATT-TATATTTC
1 TATTTATTATAT-TTTC
26162795 TACTATTATTATA-TTTC
1 TA-T-TTATTATATTTTC
26162812 TATTTATTATATTTT
1 TATTTATTATATTTT
26162827 TCTTTCTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
15 8 0.29
16 6 0.21
17 7 0.25
18 5 0.18
19 2 0.07
ACGTcount: A:0.27, C:0.06, G:0.00, T:0.67
Consensus pattern (16 bp):
TATTTATTATATTTTC
Found at i:26163028 original size:25 final size:24
Alignment explanation
Indices: 26162967--26163046 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 24
26162957 TATAACGCTC
* *
26162967 ATTTCAAATTTTTATACATTATTT
1 ATTTCAAATTTTCATACATTATAT
*
26162991 ACTTT-AATATTTTCATATATTATAT
1 A-TTTCAA-ATTTTCATACATTATAT
* *
26163016 ATTTCAAACTTTTTTTACACATTATAT
1 ATTTCAAA---TTTTCATACATTATAT
26163043 ATTT
1 ATTT
26163047 TGAATTGTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
24 7 0.16
25 20 0.45
27 17 0.39
ACGTcount: A:0.34, C:0.10, G:0.00, T:0.56
Consensus pattern (24 bp):
ATTTCAAATTTTCATACATTATAT
Found at i:26163943 original size:44 final size:44
Alignment explanation
Indices: 26163904--26164187 Score: 156
Period size: 44 Copynumber: 6.5 Consensus size: 44
26163894 GTCTTCGATT
26163904 TGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAGTC
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAGTC
* * *
26163948 TGCTCCACTACTGCTTAGGGTGATAAGATCTGTAATTTTCAGCC
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAGTC
* * * * * * * * *
26163992 TGTTACC-CTACTTCTTAGGGGGTTAAG-GCT-CACCGTCTTCAATT
1 TGCT-CCACTACTGCTTAGGGAGATAAGATCTGTA--ATCTTCAGTC
* * * *
26164036 TGTTCCGCTATTGCTTAGGGAGATAAGATCTGTAAT-TTCCAGCC
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTT-CAGTC
* * * * * * * *
26164080 TGTTACC-CTATTGCTTAGGGGGTTAAG-GCT-CACCGTCTTC-GATT
1 TGCT-CCACTACTGCTTAGGGAGATAAGATCTGTA--ATCTTCAG-TC
* * * *
26164124 TGTTCCACTATTACTTAGGGAGATAAGATCTGTAAT-TTCCAGCC
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTT-CAGTC
26164168 TGCTACC-CTACTGCTTAGGG
1 TGCT-CCACTACTGCTTAGGG
26164188 GGTTAAGGCT
Statistics
Matches: 180, Mismatches: 42, Indels: 36
0.70 0.16 0.14
Matches are distributed among these distances:
42 2 0.01
43 13 0.07
44 150 0.83
45 13 0.07
46 2 0.01
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.34
Consensus pattern (44 bp):
TGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAGTC
Found at i:26164009 original size:88 final size:88
Alignment explanation
Indices: 26163938--26164446 Score: 557
Period size: 88 Copynumber: 5.9 Consensus size: 88
26163928 AAGATCTGTA
* * *
26163938 ATCTTCAG-TCTGCTCCACTACTGCTTAGGGTGATAAGATCTGTAATTTTCAGCCTGTTACCCTA
1 ATCTTCAGATCTGTTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTACCCTA
*
26164002 CTTCTTAGGGGGTTAAGGCTCACC
66 CTGCTTAGGGGGTTAAGGCTCA-C
* * * *
26164026 GTCTTCA-ATTTGTTCCGCTATTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTACCCTA
1 ATCTTCAGATCTGTTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTACCCTA
*
26164090 TTGCTTAGGGGGTTAAGGCTCACC
66 CTGCTTAGGGGGTTAAGGCTCA-C
* * * * *
26164114 GTCTTC-GATTTGTTCCACTATTACTTAGGGAGATAAGATCTGTAATTTCCAGCCTGCTACCCTA
1 ATCTTCAGATCTGTTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTACCCTA
*
26164178 CTGCTTAGGGGGTTAAGGCTTACC
66 CTGCTTAGGGGGTTAAGGCTCA-C
** * * * * *
26164202 AT-TTTTGATCTATTCCGCTACTGCTTAGAGAGATAAGATCTGTAATTTCCAGCCTATTACCCTT
1 ATCTTCAGATCTGTTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTACCCTA
26164266 CTGCTTA--GGG---A-G-T---
66 CTGCTTAGGGGGTTAAGGCTCAC
* * *
26164279 -TCTTC-GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTGCAACCTGTTACCCTA
1 ATCTTCAGATCTGTTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTACCCTA
* *
26164342 TTGCTTAGGGGGTTAAGGCTTACC
66 CTGCTTAGGGGGTTAAGGCTCA-C
* ** * ** *
26164366 GTCTTC-GATCTACTCCGCTACTGCTTAGGGAGATAAGATCTGTAATTTTTAACCTGTTACCCTA
1 ATCTTCAGATCTGTTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTACCCTA
26164430 CTGCTTAGGGGGTTAAG
66 CTGCTTAGGGGGTTAAG
26164447 ATTTGAAATG
Statistics
Matches: 365, Mismatches: 40, Indels: 32
0.84 0.09 0.07
Matches are distributed among these distances:
76 57 0.16
77 2 0.01
78 3 0.01
81 2 0.01
82 2 0.01
83 2 0.01
86 3 0.01
87 2 0.01
88 292 0.80
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.35
Consensus pattern (88 bp):
ATCTTCAGATCTGTTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTACCCTA
CTGCTTAGGGGGTTAAGGCTCAC
Found at i:26164095 original size:132 final size:132
Alignment explanation
Indices: 26163846--26164099 Score: 359
Period size: 132 Copynumber: 1.9 Consensus size: 132
26163836 TTCAACAATT
* * *
26163846 TGTAATCTTCAGCCTATTACCCTACTGCTTAGGGGGTTAGGGCACACTGTCTTCGATTTGCTCCA
1 TGTAATCTTCAGCCTATTACCCTACTGCTTAGGGGGTTAAGGCACACCGTCTTCAATTTGCTCCA
*
26163911 CTACTGCTTAGGGAGATAAGATCTGTAATCTTCAGTCTGCTCCACTACTGCTTAGGGTGATAAGA
66 CTACTGCTTAGGGAGATAAGATCTGTAATCTTCAGCCTGCTCCACTACTGCTTAGGGTGATAAGA
26163976 TC
131 TC
* * * * * *
26163978 TGTAATTTTCAGCCTGTTACCCTACTTCTTAGGGGGTTAAGGCTCACCGTCTTCAATTTGTTCCG
1 TGTAATCTTCAGCCTATTACCCTACTGCTTAGGGGGTTAAGGCACACCGTCTTCAATTTGCTCCA
* * *
26164043 CTATTGCTTAGGGAGATAAGATCTGTAAT-TTCCAGCCTGTTACC-CTATTGCTTAGGG
66 CTACTGCTTAGGGAGATAAGATCTGTAATCTT-CAGCCTGCT-CCACTACTGCTTAGGG
26164100 GGTTAAGGCT
Statistics
Matches: 107, Mismatches: 13, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
131 2 0.02
132 103 0.96
133 2 0.02
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.35
Consensus pattern (132 bp):
TGTAATCTTCAGCCTATTACCCTACTGCTTAGGGGGTTAAGGCACACCGTCTTCAATTTGCTCCA
CTACTGCTTAGGGAGATAAGATCTGTAATCTTCAGCCTGCTCCACTACTGCTTAGGGTGATAAGA
TC
Found at i:26164431 original size:44 final size:44
Alignment explanation
Indices: 26164295--26164448 Score: 134
Period size: 44 Copynumber: 3.5 Consensus size: 44
26164285 ATCTGCTCCA
*
26164295 CTACTGCTTAGGGAGATAAGATCTGTAATTTGCAACCTGTTACC
1 CTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTGTTACC
* * * * * * * * **
26164339 CTATTGCTTAGGGGGTTAAG-GCT-TACCGTCTTCGATCTACT-CC
1 CTACTGCTTAGGGAGATAAGATCTGTA--ATTTTCAACCTGTTACC
*
26164382 GCTACTGCTTAGGGAGATAAGATCTGTAATTTTTAACCTGTTACC
1 -CTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTGTTACC
* *
26164427 CTACTGCTTAGGGGGTTAAGAT
1 CTACTGCTTAGGGAGATAAGAT
26164449 TTGAAATGTT
Statistics
Matches: 80, Mismatches: 24, Indels: 12
0.69 0.21 0.10
Matches are distributed among these distances:
42 2 0.03
43 4 0.05
44 68 0.85
45 4 0.05
46 2 0.03
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.34
Consensus pattern (44 bp):
CTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTGTTACC
Found at i:26164768 original size:178 final size:178
Alignment explanation
Indices: 26164464--26165180 Score: 1078
Period size: 178 Copynumber: 4.0 Consensus size: 178
26164454 ATGTTTAATT
* *
26164464 TGCTTCCTTGCTACCTCAGGAAGATAAGACTTGTATCTTCGACCTGCTCTCTTGCTACCTCAGAG
1 TGCTTCCTTGCTACCTCAGAAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAG
* * * * * * *
26164529 ATATAAGGCCGGTGGCTAAAATTTGCTCCATTACCGATACATGGAGATAAGACTTGCCATTTTTG
66 AGATAAGGCTGGTGGCTAAAATCTACTCCATAACCGATACATGGAGATAAGACTCGCCATTTTCG
* * *
26164594 ATCTACTCCATAGCCTATACATGGATG-TAAAATCTGTAATTTTCAGTC
131 ATCTGCTCCATAGCCGATACATGGA-GATAAGATCTGTAATTTTCAGTC
* * * *
26164642 TGCTTCCTTGGTACCTTAAAAAGATAAGACTTGTATCTTCAACCTACTCTCTTGCTACCTCAGAG
1 TGCTTCCTTGCTACCTCAGAAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAG
* * *
26164707 AGATAAAGCTAGTGGCTAAAATCTACTTCATAACCGATACATGGAGATAAGACTCGCCATTTTCG
66 AGATAAGGCTGGTGGCTAAAATCTACTCCATAACCGATACATGGAGATAAGACTCGCCATTTTCG
*
26164772 ATCTGCTCCATAGCCGATACATAGAGATAAGATCTGTAATTTTCAGTC
131 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTC
* *
26164820 TGCTTCCTTGCTACCTCAGAAAGATAAGACTTGCATCTTCAACCTGCTTTCTTGCTACCTCAGAG
1 TGCTTCCTTGCTACCTCAGAAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAG
* * * *
26164885 AGATAAGGCTGATGGCTAAAATCTACTCTATAGCCGATACATGGGGATAAGACTCGCCA-TTTCT
66 AGATAAGGCTGGTGGCTAAAATCTACTCCATAACCGATACATGGAGATAAGACTCGCCATTTTC-
*
26164949 GATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGCC
130 GATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTC
* * * *
26164998 TGCTTCCTTGCTACCTCAGGAAGATAATACCTGTATCTTCAACTTGCTCTCTTGCTACCTCAGAG
1 TGCTTCCTTGCTACCTCAGAAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAG
* *
26165063 AGATAAGGCTGGTGGCTAAAATCTGCTCCATAATCGATACATGGAGATAAGACTCGCCATTTTCG
66 AGATAAGGCTGGTGGCTAAAATCTACTCCATAACCGATACATGGAGATAAGACTCGCCATTTTCG
* * *
26165128 ATCTGCTCTATAGCCGATATATGGAGATAAGATCTATAATTTTCAGTC
131 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTC
26165176 TGCTT
1 TGCTT
26165181 GTAATGCCCC
Statistics
Matches: 485, Mismatches: 51, Indels: 6
0.89 0.09 0.01
Matches are distributed among these distances:
177 5 0.01
178 476 0.98
179 4 0.01
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (178 bp):
TGCTTCCTTGCTACCTCAGAAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAG
AGATAAGGCTGGTGGCTAAAATCTACTCCATAACCGATACATGGAGATAAGACTCGCCATTTTCG
ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTC
Found at i:26164814 original size:45 final size:45
Alignment explanation
Indices: 26164735--26164823 Score: 110
Period size: 45 Copynumber: 2.0 Consensus size: 45
26164725 AAATCTACTT
* *
26164735 CATAACCGATACATGGAGATAAGACTCGCCATTTTC-GATCTGCTC
1 CATAACCGATACATAGAGATAAGACTCGCAATTTTCAG-TCTGCTC
* *
26164780 CATAGCCGATACATAGAGATAAGA-TCTGTAATTTTCAGTCTGCT
1 CATAACCGATACATAGAGATAAGACTC-GCAATTTTCAGTCTGCT
26164824 TCCTTGCTAC
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
44 2 0.05
45 35 0.92
46 1 0.03
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.29
Consensus pattern (45 bp):
CATAACCGATACATAGAGATAAGACTCGCAATTTTCAGTCTGCTC
Found at i:26165023 original size:45 final size:44
Alignment explanation
Indices: 26164973--26165069 Score: 108
Period size: 44 Copynumber: 2.2 Consensus size: 44
26164963 CCGATACATG
* * *
26164973 GAGATAAGATCTGTAATTTTCAGCCTGCT-TCCTTGCTACCTCAG-
1 GAGATAAGACCTGT-ATCTTCAACCTGCTCT-CTTGCTACCTCAGA
* *
26165017 GAAGATAATACCTGTATCTTCAACTTGCTCTCTTGCTACCTCAGA
1 G-AGATAAGACCTGTATCTTCAACCTGCTCTCTTGCTACCTCAGA
26165062 GAGATAAG
1 GAGATAAG
26165070 GCTGGTGGCT
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
44 31 0.70
45 13 0.30
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.32
Consensus pattern (44 bp):
GAGATAAGACCTGTATCTTCAACCTGCTCTCTTGCTACCTCAGA
Found at i:26168534 original size:15 final size:14
Alignment explanation
Indices: 26168510--26168563 Score: 72
Period size: 15 Copynumber: 3.6 Consensus size: 14
26168500 AGGAAACCGA
26168510 ATAAAGAAATCCAAG
1 ATAAAGAAATCC-AG
*
26168525 ATAGAGAAATCCAG
1 ATAAAGAAATCCAG
26168539 AGTAAAGAAATCCAG
1 A-TAAAGAAATCCAG
26168554 AATAAAGAAA
1 -ATAAAGAAA
26168564 CCCAAGATAC
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
14 3 0.09
15 31 0.89
16 1 0.03
ACGTcount: A:0.59, C:0.11, G:0.17, T:0.13
Consensus pattern (14 bp):
ATAAAGAAATCCAG
Found at i:26178751 original size:22 final size:24
Alignment explanation
Indices: 26178703--26178751 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
26178693 CATTCAAGAT
** *
26178703 AAAATAATATATAAAACTCTTTTA
1 AAAATAATATATAAAACTAATTCA
26178727 AAAATAATATAT-AAAC-AATTCA
1 AAAATAATATATAAAACTAATTCA
26178749 AAA
1 AAA
26178752 TATATAATGT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 6 0.27
23 4 0.18
24 12 0.55
ACGTcount: A:0.61, C:0.08, G:0.00, T:0.31
Consensus pattern (24 bp):
AAAATAATATATAAAACTAATTCA
Found at i:26178991 original size:15 final size:15
Alignment explanation
Indices: 26178967--26178996 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26178957 ATATAAATAG
26178967 AAATAAAAATATAAT
1 AAATAAAAATATAAT
*
26178982 AAATAGAAATATAAT
1 AAATAAAAATATAAT
26178997 TATAGTAGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (15 bp):
AAATAAAAATATAAT
Found at i:26182956 original size:22 final size:23
Alignment explanation
Indices: 26182931--26182988 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 23
26182921 CAACCAAACC
26182931 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
26182953 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
*
26182976 AAGTCATCACATA
1 AATTCAT-ACATA
26182989 CCCAAAACCA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 6 0.20
23 19 0.63
24 5 0.17
ACGTcount: A:0.45, C:0.14, G:0.07, T:0.34
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:26186501 original size:11 final size:11
Alignment explanation
Indices: 26186485--26186510 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
26186475 CCTGGGTTAA
26186485 GCGTTGATATT
1 GCGTTGATATT
26186496 GCGTTGATATT
1 GCGTTGATATT
26186507 GCGT
1 GCGT
26186511 CCCCATAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.12, G:0.31, T:0.42
Consensus pattern (11 bp):
GCGTTGATATT
Found at i:26191073 original size:132 final size:132
Alignment explanation
Indices: 26190827--26191410 Score: 704
Period size: 132 Copynumber: 4.4 Consensus size: 132
26190817 GGTGAATTCA
* * * * *
26190827 CAGATCTTATCTCCCTAAGCAGTAATGGAGCAGATCGAAGACGACAAATCTTATCTTTCCGAGGT
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGT
* *
26190892 AGTGGGGAAGCAGATTTAAGCCACTAGCCTTATCTCCCTAAGCAACAGTGGAGCAGACTGAAGAT
66 AGTAGGGAAGCAGATTTAAGCCACTAGCCTTATCTCCCTAAGCAGCAGTGGAGCAGACTGAAGAT
*
26190957 TA
131 TG
* * * * * **
26190959 CAGATCTTATCTCCCTAAGCAATGGTGGAGCGGATCGAAGATGGTGAATCTTATCTTCCTGAGGT
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGT
* *** * * **
26191024 AGTAGAGAAGCAGATTTAAGCCACTAATTTTACCTCCCTGAGCAGCAGTGGAGCAGGTTGAAGAT
66 AGTAGGGAAGCAGATTTAAGCCACTAGCCTTATCTCCCTAAGCAGCAGTGGAGCAGACTGAAGAT
26191089 TG
131 TG
*
26191091 CAGATCATATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGT
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGT
* * * * * * * *
26191156 AGTGGGGAAGCAAATTTAAGCCATTAGTCTTATCTCCCTGAGAAGCAGTGGAGCAGGCTGAAAAT
66 AGTAGGGAAGCAGATTTAAGCCACTAGCCTTATCTCCCTAAGCAGCAGTGGAGCAGACTGAAGAT
26191221 TG
131 TG
* * *
26191223 CAGATCATATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGTGAATCTTATCTTCCCAAGGT
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGT
* ** * * * *
26191288 AGCAGGGGCGTAGATTTAAGTCACTAGCTTTATCTCCCTAAGTAGCAGTAGG-GCA-AGCTGAAG
66 AGTAGGGAAGCAGATTTAAGCCACTAGCCTTATCTCCCTAAGCAGCAGT-GGAGCAGA-CTGAAG
26191351 ATTG
129 ATTG
* * * * * *
26191355 TAGATCTTATCTCCCTGAGTAGCAGTGGAGCAGATCAAAGATGGCGAATCTTATCT
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCT
26191411 CCATGAAGCA
Statistics
Matches: 386, Mismatches: 64, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
132 384 0.99
133 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (132 bp):
CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGT
AGTAGGGAAGCAGATTTAAGCCACTAGCCTTATCTCCCTAAGCAGCAGTGGAGCAGACTGAAGAT
TG
Found at i:26191278 original size:44 final size:44
Alignment explanation
Indices: 26190830--26191278 Score: 168
Period size: 44 Copynumber: 10.2 Consensus size: 44
26190820 GAATTCACAG
* * ***
26190830 ATCTTATCTCCCTAAGCAGTAATGGAGCAGATCGAAGACGACAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGTGA
* * * * * * * **
26190874 ATCTTATCTTTCCGAGGTAGT-GGGGAAGCAGATTTAAGCCACT-A
1 ATCTTATC-TCCCTAAGCAGTAGTGG-AGCAGATTGAAGACGGTGA
** ** * * *
26190918 GCCTTATCTCCCTAAGCAACAGTGGAGCAGACTGAAGA--TTACA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGT-GA
* * * * *
26190961 GATCTTATCTCCCTAAGCAATGGTGGAGCGGATCGAAGATGGTGA
1 -ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGTGA
* * * * * * * **
26191006 ATCTTATCTTCCTGAGGTAGTAGAGAAGCAGATTTAAGCCACT-A
1 ATCTTATCTCCCT-AAGCAGTAGTGGAGCAGATTGAAGACGGTGA
* * * * * *
26191050 ATTTTACCTCCCTGAGCAGCAGTGGAGCAGGTTGAAGA--TTGCA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGTG-A
* * *
26191093 GATCATATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
1 -ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGTGA
* * ** *
26191138 ATCTTATCTTCCC-AAG--GTAGTGGGGAAGCAAATTTAAG-CCATTA
1 ATCTTATC-TCCCTAAGCAGTAGT--GG-AGCAGATTGAAGACGGTGA
* * * * ** **
26191182 GTCTTATCTCCCTGAGAAGCAGTGGAGCAGGCTGAA-A-ATTGCA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGTG-A
*
26191225 GATCATATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGTGA
1 -ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGTGA
26191270 ATCTTATCT
1 ATCTTATCT
26191279 TCCCAAGGTA
Statistics
Matches: 281, Mismatches: 98, Indels: 52
0.65 0.23 0.12
Matches are distributed among these distances:
41 2 0.01
42 6 0.02
43 46 0.16
44 167 0.59
45 52 0.19
46 8 0.03
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (44 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGTGA
Found at i:26191305 original size:264 final size:264
Alignment explanation
Indices: 26190827--26191410 Score: 776
Period size: 264 Copynumber: 2.2 Consensus size: 264
26190817 GGTGAATTCA
* * * * *
26190827 CAGATCTTATCTCCCTAAGCAGTAATGGAGCAGATCGAAGACGACAAATCTTATCTTTCCGAGGT
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGT
* *
26190892 AGTGGGGAAGCAGATTTAAGCCACTAGCCTTATCTCCCTAAGCAACAGTGGAGCAGACTGAAGAT
66 AGTGGGGAAGCAAATTTAAGCCACTAGCCTTATCTCCCTAAGCAACAGTGGAGCAGACTGAAAAT
* * * * **
26190957 TACAGATCTTATCTCCCTAAGCAATGGTGGAGCGGATCGAAGATGGTGAATCTTATCTTCCTGAG
131 TACAGATCATATCTCCCTAAGCAATAGTGGAGCAGATCGAAGACGGTGAATCTTATCTTCCCAAG
* * * * *
26191022 GTAGTAGAGAAGCAGATTTAAGCCACTAATTTTACCTCCCTGAGCAGCAGT-GGAGCAGGTTGAA
196 GTAGCAGAGAAGCAGATTTAAGCCACTAACTTTACCTCCCTAAGCAGCAGTAGG-GCAAGCTGAA
26191086 GATTG
260 GATTG
*
26191091 CAGATCATATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGT
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGT
* * * *
26191156 AGTGGGGAAGCAAATTTAAGCCATTAGTCTTATCTCCCTGAG-AAGCAGTGGAGCAGGCTGAAAA
66 AGTGGGGAAGCAAATTTAAGCCACTAGCCTTATCTCCCTAAGCAA-CAGTGGAGCAGACTGAAAA
* * *
26191220 TTGCAGATCATATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGTGAATCTTATCTTCCCAA
130 TTACAGATCATATCTCCCTAAGCAATAGTGGAGCAGATCGAAGACGGTGAATCTTATCTTCCCAA
* ** * * * * *
26191285 GGTAGCAGGGGCGTAGATTTAAGTCACTAGCTTTATCTCCCTAAGTAGCAGTAGGGCAAGCTGAA
195 GGTAGCAGAGAAGCAGATTTAAGCCACTAACTTTACCTCCCTAAGCAGCAGTAGGGCAAGCTGAA
26191350 GATTG
260 GATTG
* * * * * *
26191355 TAGATCTTATCTCCCTGAGTAGCAGTGGAGCAGATCAAAGATGGCGAATCTTATCT
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCT
26191411 CCATGAAGCA
Statistics
Matches: 277, Mismatches: 41, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
263 2 0.01
264 273 0.99
265 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (264 bp):
CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGT
AGTGGGGAAGCAAATTTAAGCCACTAGCCTTATCTCCCTAAGCAACAGTGGAGCAGACTGAAAAT
TACAGATCATATCTCCCTAAGCAATAGTGGAGCAGATCGAAGACGGTGAATCTTATCTTCCCAAG
GTAGCAGAGAAGCAGATTTAAGCCACTAACTTTACCTCCCTAAGCAGCAGTAGGGCAAGCTGAAG
ATTG
Found at i:26192835 original size:15 final size:16
Alignment explanation
Indices: 26192815--26192849 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
26192805 TTGAGTTTTG
26192815 TATTTACTATTA-TAT
1 TATTTACTATTAGTAT
*
26192830 TATTTATTATTAGTAT
1 TATTTACTATTAGTAT
26192846 TATT
1 TATT
26192850 ATGTTCATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 11 0.61
16 7 0.39
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (16 bp):
TATTTACTATTAGTAT
Found at i:26192839 original size:3 final size:3
Alignment explanation
Indices: 26192822--26193221 Score: 64
Period size: 3 Copynumber: 133.7 Consensus size: 3
26192812 TTGTATTTAC
* * * * *
26192822 TAT TA- TAT TATT TAT TAT TAG TAT TAT TAT GT-T CAT TAT AAC TGT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT
* * * *
26192867 CAT TAT TAT TAT TATT TAT TAT TAT TTT CTAC TAT TAT TAT TAA TA-
1 TAT TAT TAT TAT TA-T TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT
* * * * * * * * *
26192913 TAT TAT CAT TAC TAT T-T TTT TCA- TAT CAG TAC TAT CAG TAC TAT
1 TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT
* * * * * * *
26192957 CAT TAT TAACT TTT TAT TTT TAT TTT TAT TTT TAT TAT TAG CA- TAT
1 TAT TAT T-A-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
26193003 TAT TAAG T-T TAT TAA TA- TAT TAT TAT TAT CT-T CTAT T-T TGT TGT
1 TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT -TAT -TAT TAT TAT TAT
** * ** * * *
26193047 CGT TAT TAT TAT TTT TAT CGT TAC TAT TA- TATT TAT GAT TAT TGT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT
* * * * *
26193092 TAG CAT TAT T-T TAT TAT TAC TAT TAT TAT CA- TAT TAT TA- AAT TAAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT
* * * *
26193138 TAAT TCT ATAT TAT T-T TCAT TACCT TA- TAT T-T TTT TTT TA- CATT
1 T-AT TAT -TAT TAT TAT T-AT TA--T TAT TAT TAT TAT TAT TAT TA-T
* * *
26193182 TAC TAC TAT TAT TAT TAC TAT TAT TAT T-T TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
26193222 CCTACATACT
Statistics
Matches: 280, Mismatches: 82, Indels: 70
0.65 0.19 0.16
Matches are distributed among these distances:
2 28 0.10
3 220 0.79
4 27 0.10
5 5 0.02
ACGTcount: A:0.29, C:0.08, G:0.04, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:26192887 original size:13 final size:13
Alignment explanation
Indices: 26192869--26192918 Score: 57
Period size: 13 Copynumber: 3.8 Consensus size: 13
26192859 ATAACTGTCA
26192869 TTATTATTATTAT
1 TTATTATTATTAT
26192882 TTATTATTATT-T
1 TTATTATTATTAT
*
26192894 TCTACTATTATTAT
1 T-TATTATTATTAT
*
26192908 TAATATATTAT
1 TTAT-TATTAT
26192919 CATTACTATT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
12 2 0.06
13 21 0.68
14 8 0.26
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (13 bp):
TTATTATTATTAT
Found at i:26192925 original size:26 final size:25
Alignment explanation
Indices: 26192866--26192928 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 25
26192856 ATTATAACTG
* *
26192866 TCATTATTATTATTATTTATTATTA
1 TCATTACTATTATTATTAATTATTA
**
26192891 TTTTCTACTATTATTATTAATATATTA
1 TCAT-TACTATTATTATTAAT-TATTA
26192918 TCATTACTATT
1 TCATTACTATT
26192929 TTTTTCATAT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
25 2 0.07
26 21 0.70
27 7 0.23
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (25 bp):
TCATTACTATTATTATTAATTATTA
Found at i:26193308 original size:24 final size:23
Alignment explanation
Indices: 26193279--26193332 Score: 63
Period size: 24 Copynumber: 2.3 Consensus size: 23
26193269 ATTAATATCA
* *
26193279 TTATTAACGTATTATTTTTTATTT
1 TTATTAACATATTA-TTATTATTT
*
26193303 TTATTAATATATTATTATTATTT
1 TTATTAACATATTATTATTATTT
26193326 TTCATTA
1 TT-ATTA
26193333 TTAATATTGT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 10 0.38
24 16 0.62
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.65
Consensus pattern (23 bp):
TTATTAACATATTATTATTATTT
Found at i:26193308 original size:27 final size:25
Alignment explanation
Indices: 26193276--26193351 Score: 75
Period size: 25 Copynumber: 3.0 Consensus size: 25
26193266 ATCATTAATA
*
26193276 TCATTATTAACGTATTATTTTTTATTTT
1 TCATTATTAA--TATTA-TTATTATTTT
*
26193304 T-ATTAAT-ATATTATTATTATTTT
1 TCATTATTAATATTATTATTATTTT
* *
26193327 TCATTATTAATATTGTCATTATTTT
1 TCATTATTAATATTATTATTATTTT
26193352 AAACCTTTTA
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
23 10 0.24
24 10 0.24
25 14 0.34
26 1 0.02
27 5 0.12
28 1 0.02
ACGTcount: A:0.29, C:0.05, G:0.03, T:0.63
Consensus pattern (25 bp):
TCATTATTAATATTATTATTATTTT
Found at i:26193322 original size:38 final size:38
Alignment explanation
Indices: 26193250--26193319 Score: 110
Period size: 38 Copynumber: 1.9 Consensus size: 38
26193240 CCTTATATAT
26193250 TATTATTTTCTATTTTATCATTAATATCATTATTAACG
1 TATTATTTTCTATTTTATCATTAATATCATTATTAACG
*
26193288 TATTATTTTTTATTTT-T-ATTAATAT-ATTATTA
1 TATTATTTTCTATTTTATCATTAATATCATTATTA
26193320 TTATTTTTCA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
35 7 0.23
36 8 0.26
37 1 0.03
38 15 0.48
ACGTcount: A:0.31, C:0.06, G:0.01, T:0.61
Consensus pattern (38 bp):
TATTATTTTCTATTTTATCATTAATATCATTATTAACG
Found at i:26193324 original size:30 final size:32
Alignment explanation
Indices: 26193243--26193327 Score: 86
Period size: 38 Copynumber: 2.6 Consensus size: 32
26193233 TCATCATCCT
*
26193243 TATA-TATTATTATTTTCTATTTTATCATTAA
1 TATATTATTATTATTTTTTATTTTATCATTAA
26193274 TATCATTATTAACGTATTATTTTTTATTTT-T-ATTAA
1 TAT-ATTA-T----TATTATTTTTTATTTTATCATTAA
26193310 TATATTATTATTATTTTT
1 TATATTATTATTATTTTT
26193328 CATTATTAAT
Statistics
Matches: 46, Mismatches: 1, Indels: 15
0.74 0.02 0.24
Matches are distributed among these distances:
30 10 0.22
31 3 0.07
32 1 0.02
33 2 0.04
34 2 0.04
35 4 0.09
36 8 0.17
37 1 0.02
38 15 0.33
ACGTcount: A:0.31, C:0.05, G:0.01, T:0.64
Consensus pattern (32 bp):
TATATTATTATTATTTTTTATTTTATCATTAA
Found at i:26195679 original size:20 final size:20
Alignment explanation
Indices: 26195654--26195693 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
26195644 AGTTTGATTC
26195654 GTTAAAACCATTTTAACTTG
1 GTTAAAACCATTTTAACTTG
**
26195674 GTTAAAATTATTTTAACTTG
1 GTTAAAACCATTTTAACTTG
26195694 ATTTTAAAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.35, C:0.10, G:0.10, T:0.45
Consensus pattern (20 bp):
GTTAAAACCATTTTAACTTG
Found at i:26198615 original size:990 final size:990
Alignment explanation
Indices: 26196696--26198675 Score: 3960
Period size: 990 Copynumber: 2.0 Consensus size: 990
26196686 TTTAATTTAT
26196696 CCAGTTATATTTCATGATTTTATAAATTTAAAATTTTATTAATTAATAATATATTATAAACGTTT
1 CCAGTTATATTTCATGATTTTATAAATTTAAAATTTTATTAATTAATAATATATTATAAACGTTT
26196761 AAAACATATAATCAAATTAATTGATTTCACATAATATATTATCATATTTAATTAATATCACTTTT
66 AAAACATATAATCAAATTAATTGATTTCACATAATATATTATCATATTTAATTAATATCACTTTT
26196826 ATTATTACATAATAATACTAATAAATTTTTATTAGAATGTCAATTTAGTATATAATTAATTTAAA
131 ATTATTACATAATAATACTAATAAATTTTTATTAGAATGTCAATTTAGTATATAATTAATTTAAA
26196891 AGTTTTTCCAAACTCATATTCTTATGTTTATTAATTTCTAATGGCACACGCATTACATGTGATTT
196 AGTTTTTCCAAACTCATATTCTTATGTTTATTAATTTCTAATGGCACACGCATTACATGTGATTT
26196956 TATGTATTTAATTTTTAATTAATTTTTAAATAATATATTTTTAATTCATTATTTTTATTGTTAAA
261 TATGTATTTAATTTTTAATTAATTTTTAAATAATATATTTTTAATTCATTATTTTTATTGTTAAA
26197021 TCTAATTAAAATATATTAACAATTCAAATACCATATTAAAATATTGATATTTTGTAGATCAATAA
326 TCTAATTAAAATATATTAACAATTCAAATACCATATTAAAATATTGATATTTTGTAGATCAATAA
26197086 TTCTTTAATAATAAATATTTGTACTATTTTCAACATAATCTTCACTTTTTACTATTTGATTTTTA
391 TTCTTTAATAATAAATATTTGTACTATTTTCAACATAATCTTCACTTTTTACTATTTGATTTTTA
26197151 TTTTTATTTTTATTTTCTTAACATTAAAAAAATTGACTATAATAATTTGTAAATAATTACTACTT
456 TTTTTATTTTTATTTTCTTAACATTAAAAAAATTGACTATAATAATTTGTAAATAATTACTACTT
26197216 TTATTTTTTGATTGAACTTTTTTTTATCTAGTAATGGTAAATTAAATTATAATAATTATTAAATG
521 TTATTTTTTGATTGAACTTTTTTTTATCTAGTAATGGTAAATTAAATTATAATAATTATTAAATG
26197281 TGTAATTATTGCAACTTTATACTTATTAAAAATTAATTAATATTTCTAAAAGAAATATTATAATT
586 TGTAATTATTGCAACTTTATACTTATTAAAAATTAATTAATATTTCTAAAAGAAATATTATAATT
26197346 ATTTGAAAATGCGGTATTCTCATGTTTGATTTATTATTAACAACAGAAATTTGACAGCATAAGTC
651 ATTTGAAAATGCGGTATTCTCATGTTTGATTTATTATTAACAACAGAAATTTGACAGCATAAGTC
26197411 CGGAATAATAGCAAGAGATTGCTAAGCCATTATTTTTAGCAACCAATAGTAGATCTTCATTGAAT
716 CGGAATAATAGCAAGAGATTGCTAAGCCATTATTTTTAGCAACCAATAGTAGATCTTCATTGAAT
26197476 ATTACAACAACAACAAAGACAGCTTTGTCGGAAAAGTAGAAAATCTAAGCTTCAGTTTTTTCCTT
781 ATTACAACAACAACAAAGACAGCTTTGTCGGAAAAGTAGAAAATCTAAGCTTCAGTTTTTTCCTT
26197541 TTTGCCCAAGAGCTGGAAACCAAATGCCAAACCTAAGATCAGGAGGGGTACCAAGAACTGTAATA
846 TTTGCCCAAGAGCTGGAAACCAAATGCCAAACCTAAGATCAGGAGGGGTACCAAGAACTGTAATA
26197606 TCTTAAACAGAAAGCCGGGTTCGTCATCTTTTTGGGTCACTGAATACGTCTGTGGTTTGATCTTG
911 TCTTAAACAGAAAGCCGGGTTCGTCATCTTTTTGGGTCACTGAATACGTCTGTGGTTTGATCTTG
26197671 TTTGGAGGAGGAACC
976 TTTGGAGGAGGAACC
26197686 CCAGTTATATTTCATGATTTTATAAATTTAAAATTTTATTAATTAATAATATATTATAAACGTTT
1 CCAGTTATATTTCATGATTTTATAAATTTAAAATTTTATTAATTAATAATATATTATAAACGTTT
26197751 AAAACATATAATCAAATTAATTGATTTCACATAATATATTATCATATTTAATTAATATCACTTTT
66 AAAACATATAATCAAATTAATTGATTTCACATAATATATTATCATATTTAATTAATATCACTTTT
26197816 ATTATTACATAATAATACTAATAAATTTTTATTAGAATGTCAATTTAGTATATAATTAATTTAAA
131 ATTATTACATAATAATACTAATAAATTTTTATTAGAATGTCAATTTAGTATATAATTAATTTAAA
26197881 AGTTTTTCCAAACTCATATTCTTATGTTTATTAATTTCTAATGGCACACGCATTACATGTGATTT
196 AGTTTTTCCAAACTCATATTCTTATGTTTATTAATTTCTAATGGCACACGCATTACATGTGATTT
26197946 TATGTATTTAATTTTTAATTAATTTTTAAATAATATATTTTTAATTCATTATTTTTATTGTTAAA
261 TATGTATTTAATTTTTAATTAATTTTTAAATAATATATTTTTAATTCATTATTTTTATTGTTAAA
26198011 TCTAATTAAAATATATTAACAATTCAAATACCATATTAAAATATTGATATTTTGTAGATCAATAA
326 TCTAATTAAAATATATTAACAATTCAAATACCATATTAAAATATTGATATTTTGTAGATCAATAA
26198076 TTCTTTAATAATAAATATTTGTACTATTTTCAACATAATCTTCACTTTTTACTATTTGATTTTTA
391 TTCTTTAATAATAAATATTTGTACTATTTTCAACATAATCTTCACTTTTTACTATTTGATTTTTA
26198141 TTTTTATTTTTATTTTCTTAACATTAAAAAAATTGACTATAATAATTTGTAAATAATTACTACTT
456 TTTTTATTTTTATTTTCTTAACATTAAAAAAATTGACTATAATAATTTGTAAATAATTACTACTT
26198206 TTATTTTTTGATTGAACTTTTTTTTATCTAGTAATGGTAAATTAAATTATAATAATTATTAAATG
521 TTATTTTTTGATTGAACTTTTTTTTATCTAGTAATGGTAAATTAAATTATAATAATTATTAAATG
26198271 TGTAATTATTGCAACTTTATACTTATTAAAAATTAATTAATATTTCTAAAAGAAATATTATAATT
586 TGTAATTATTGCAACTTTATACTTATTAAAAATTAATTAATATTTCTAAAAGAAATATTATAATT
26198336 ATTTGAAAATGCGGTATTCTCATGTTTGATTTATTATTAACAACAGAAATTTGACAGCATAAGTC
651 ATTTGAAAATGCGGTATTCTCATGTTTGATTTATTATTAACAACAGAAATTTGACAGCATAAGTC
26198401 CGGAATAATAGCAAGAGATTGCTAAGCCATTATTTTTAGCAACCAATAGTAGATCTTCATTGAAT
716 CGGAATAATAGCAAGAGATTGCTAAGCCATTATTTTTAGCAACCAATAGTAGATCTTCATTGAAT
26198466 ATTACAACAACAACAAAGACAGCTTTGTCGGAAAAGTAGAAAATCTAAGCTTCAGTTTTTTCCTT
781 ATTACAACAACAACAAAGACAGCTTTGTCGGAAAAGTAGAAAATCTAAGCTTCAGTTTTTTCCTT
26198531 TTTGCCCAAGAGCTGGAAACCAAATGCCAAACCTAAGATCAGGAGGGGTACCAAGAACTGTAATA
846 TTTGCCCAAGAGCTGGAAACCAAATGCCAAACCTAAGATCAGGAGGGGTACCAAGAACTGTAATA
26198596 TCTTAAACAGAAAGCCGGGTTCGTCATCTTTTTGGGTCACTGAATACGTCTGTGGTTTGATCTTG
911 TCTTAAACAGAAAGCCGGGTTCGTCATCTTTTTGGGTCACTGAATACGTCTGTGGTTTGATCTTG
26198661 TTTGGAGGAGGAACC
976 TTTGGAGGAGGAACC
26198676 GTGGTGCTGT
Statistics
Matches: 990, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
990 990 1.00
ACGTcount: A:0.37, C:0.11, G:0.10, T:0.42
Consensus pattern (990 bp):
CCAGTTATATTTCATGATTTTATAAATTTAAAATTTTATTAATTAATAATATATTATAAACGTTT
AAAACATATAATCAAATTAATTGATTTCACATAATATATTATCATATTTAATTAATATCACTTTT
ATTATTACATAATAATACTAATAAATTTTTATTAGAATGTCAATTTAGTATATAATTAATTTAAA
AGTTTTTCCAAACTCATATTCTTATGTTTATTAATTTCTAATGGCACACGCATTACATGTGATTT
TATGTATTTAATTTTTAATTAATTTTTAAATAATATATTTTTAATTCATTATTTTTATTGTTAAA
TCTAATTAAAATATATTAACAATTCAAATACCATATTAAAATATTGATATTTTGTAGATCAATAA
TTCTTTAATAATAAATATTTGTACTATTTTCAACATAATCTTCACTTTTTACTATTTGATTTTTA
TTTTTATTTTTATTTTCTTAACATTAAAAAAATTGACTATAATAATTTGTAAATAATTACTACTT
TTATTTTTTGATTGAACTTTTTTTTATCTAGTAATGGTAAATTAAATTATAATAATTATTAAATG
TGTAATTATTGCAACTTTATACTTATTAAAAATTAATTAATATTTCTAAAAGAAATATTATAATT
ATTTGAAAATGCGGTATTCTCATGTTTGATTTATTATTAACAACAGAAATTTGACAGCATAAGTC
CGGAATAATAGCAAGAGATTGCTAAGCCATTATTTTTAGCAACCAATAGTAGATCTTCATTGAAT
ATTACAACAACAACAAAGACAGCTTTGTCGGAAAAGTAGAAAATCTAAGCTTCAGTTTTTTCCTT
TTTGCCCAAGAGCTGGAAACCAAATGCCAAACCTAAGATCAGGAGGGGTACCAAGAACTGTAATA
TCTTAAACAGAAAGCCGGGTTCGTCATCTTTTTGGGTCACTGAATACGTCTGTGGTTTGATCTTG
TTTGGAGGAGGAACC
Found at i:26200783 original size:23 final size:23
Alignment explanation
Indices: 26200754--26200798 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
26200744 ACTCATAACC
*
26200754 ACTACTGTAGCGATCAAAGAGAT
1 ACTACTGTACCGATCAAAGAGAT
26200777 ACTACTGTACCGATCAAAGAGA
1 ACTACTGTACCGATCAAAGAGA
26200799 GCATCAGAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (23 bp):
ACTACTGTACCGATCAAAGAGAT
Found at i:26208576 original size:100 final size:100
Alignment explanation
Indices: 26208403--26208602 Score: 400
Period size: 100 Copynumber: 2.0 Consensus size: 100
26208393 GTGCTTTAGA
26208403 CTAGGCTTTTGACTTGTCCAAAGCTCATAAGGTGTTTTTGCAGCTGTTTTAGTAGGTACTCTATT
1 CTAGGCTTTTGACTTGTCCAAAGCTCATAAGGTGTTTTTGCAGCTGTTTTAGTAGGTACTCTATT
26208468 CAAAATGTAAGTTGTTGTCTTTAAAAGCATTGGCT
66 CAAAATGTAAGTTGTTGTCTTTAAAAGCATTGGCT
26208503 CTAGGCTTTTGACTTGTCCAAAGCTCATAAGGTGTTTTTGCAGCTGTTTTAGTAGGTACTCTATT
1 CTAGGCTTTTGACTTGTCCAAAGCTCATAAGGTGTTTTTGCAGCTGTTTTAGTAGGTACTCTATT
26208568 CAAAATGTAAGTTGTTGTCTTTAAAAGCATTGGCT
66 CAAAATGTAAGTTGTTGTCTTTAAAAGCATTGGCT
26208603 AAATGAGTAT
Statistics
Matches: 100, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
100 100 1.00
ACGTcount: A:0.24, C:0.15, G:0.21, T:0.40
Consensus pattern (100 bp):
CTAGGCTTTTGACTTGTCCAAAGCTCATAAGGTGTTTTTGCAGCTGTTTTAGTAGGTACTCTATT
CAAAATGTAAGTTGTTGTCTTTAAAAGCATTGGCT
Found at i:26209882 original size:21 final size:23
Alignment explanation
Indices: 26209842--26209891 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
26209832 ATTAACTTGA
26209842 TAAATATTATATTAATTTAATAT
1 TAAATATTATATTAATTTAATAT
*
26209865 TAAATCTTAT-TTAA-TTAATA-
1 TAAATATTATATTAATTTAATAT
26209885 -AAATATT
1 TAAATATT
26209892 TATCTATAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
19 6 0.24
21 6 0.24
22 4 0.16
23 9 0.36
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (23 bp):
TAAATATTATATTAATTTAATAT
Found at i:26211327 original size:12 final size:12
Alignment explanation
Indices: 26211310--26211343 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
26211300 TGGCCCGCCC
26211310 ATATTAATTTTT
1 ATATTAATTTTT
*
26211322 ATATTATTTTTT
1 ATATTAATTTTT
26211334 ATA-TAATTTT
1 ATATTAATTTT
26211344 AAAATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:26212890 original size:30 final size:30
Alignment explanation
Indices: 26212854--26212913 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
26212844 GAAATAGGAA
*
26212854 TAAATTATTCAGGGTGTTATAACTCTACCC
1 TAAATTATTCAGGGCGTTATAACTCTACCC
26212884 TAAATTATTCAGGGCGTTATAACTCTACCC
1 TAAATTATTCAGGGCGTTATAACTCTACCC
26212914 CTTAAAAGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.35
Consensus pattern (30 bp):
TAAATTATTCAGGGCGTTATAACTCTACCC
Found at i:26214860 original size:16 final size:17
Alignment explanation
Indices: 26214829--26214862 Score: 52
Period size: 16 Copynumber: 2.0 Consensus size: 17
26214819 TCAGGCTGCA
26214829 TCAGAACAGGAGCTTGAG
1 TCAGAACA-GAGCTTGAG
26214847 TCAGAACA-AGCTTGAG
1 TCAGAACAGAGCTTGAG
26214863 CTTCTCGAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
18 8 0.50
ACGTcount: A:0.35, C:0.18, G:0.29, T:0.18
Consensus pattern (17 bp):
TCAGAACAGAGCTTGAG
Found at i:26222846 original size:22 final size:23
Alignment explanation
Indices: 26222821--26222879 Score: 61
Period size: 22 Copynumber: 2.6 Consensus size: 23
26222811 GCTAACTCAG
26222821 TACAGTTTCAGAAG-GTACTATC
1 TACAGTTTCAGAAGAGTACTATC
*
26222843 TACAATGTTTCAG-AGTAGTTCTATC
1 TAC-A-GTTTCAGAAG-AGTACTATC
26222868 TA-AGTTTCAGAA
1 TACAGTTTCAGAA
26222880 ATACTTACAG
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
22 10 0.32
23 5 0.16
24 7 0.23
25 9 0.29
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (23 bp):
TACAGTTTCAGAAGAGTACTATC
Found at i:26227890 original size:46 final size:46
Alignment explanation
Indices: 26227616--26227890 Score: 430
Period size: 46 Copynumber: 6.0 Consensus size: 46
26227606 TTTGACATGA
* * * * *
26227616 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATG-T
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCA-GAT
**
26227662 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACG-T
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA-GAT
*
26227708 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGAT
26227754 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGAT
26227800 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGAT
26227846 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGA
26227891 GAGCACACTC
Statistics
Matches: 218, Mismatches: 9, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
45 5 0.02
46 213 0.98
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGAT
Found at i:26231106 original size:40 final size:39
Alignment explanation
Indices: 26231038--26231172 Score: 139
Period size: 40 Copynumber: 3.4 Consensus size: 39
26231028 ACCAATTTGG
* * * *
26231038 CACCTAGTGCCTCATCGGATAATTCGAAGTAATAGATTGA
1 CACCCAGTGTCTCATCGGTTAATCCGAAGTAATA-ATTGA
* * *
26231078 CGCCCAGTGTCTCATCGGTTAAACCGAAGT-A-AATTGG
1 CACCCAGTGTCTCATCGGTTAATCCGAAGTAATAATTGA
* * *
26231115 CACCCAATGTCTTATCGAATTAATCCGAAGTAATAAATTGA
1 CACCCAGTGTCTCATCG-GTTAATCCGAAGTAAT-AATTGA
26231156 CACCCAGTGTCTCATCG
1 CACCCAGTGTCTCATCG
26231173 ACTCGAAGTC
Statistics
Matches: 76, Mismatches: 15, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
37 18 0.24
38 12 0.16
39 2 0.03
40 24 0.32
41 20 0.26
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.27
Consensus pattern (39 bp):
CACCCAGTGTCTCATCGGTTAATCCGAAGTAATAATTGA
Found at i:26231160 original size:41 final size:41
Alignment explanation
Indices: 26231038--26231173 Score: 138
Period size: 41 Copynumber: 3.4 Consensus size: 41
26231028 ACCAATTTGG
* * * * *
26231038 CACCTAGTGCCTCATCGGA-TAATTCGAAGTAATAGATTGA
1 CACCCAGTGTCTCATCGAATTAATCCGAAGTAATAAATTGA
* * * *
26231078 CGCCCAGTGTCTCATCG-GTTAAACCGAAG---TAAATTGG
1 CACCCAGTGTCTCATCGAATTAATCCGAAGTAATAAATTGA
* *
26231115 CACCCAATGTCTTATCGAATTAATCCGAAGTAATAAATTGA
1 CACCCAGTGTCTCATCGAATTAATCCGAAGTAATAAATTGA
26231156 CACCCAGTGTCTCATCGA
1 CACCCAGTGTCTCATCGA
26231174 CTCGAAGTCG
Statistics
Matches: 75, Mismatches: 16, Indels: 9
0.75 0.16 0.09
Matches are distributed among these distances:
37 20 0.27
38 10 0.13
40 22 0.29
41 23 0.31
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (41 bp):
CACCCAGTGTCTCATCGAATTAATCCGAAGTAATAAATTGA
Found at i:26232124 original size:14 final size:14
Alignment explanation
Indices: 26232085--26232125 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
26232075 TTCCCTTTCC
26232085 CTTTCTATTTCGTTT
1 CTTTCTATTT-GTTT
*
26232100 -TTGCT-TTTGTTT
1 CTTTCTATTTGTTT
26232112 CTTTCTATTTGTTT
1 CTTTCTATTTGTTT
26232126 TTCTTTCTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
12 4 0.18
13 7 0.32
14 11 0.50
ACGTcount: A:0.05, C:0.15, G:0.10, T:0.71
Consensus pattern (14 bp):
CTTTCTATTTGTTT
Found at i:26233717 original size:40 final size:41
Alignment explanation
Indices: 26233673--26233836 Score: 185
Period size: 40 Copynumber: 4.0 Consensus size: 41
26233663 TAATTTGCGT
**
26233673 ATCGAGATAGCTTTGGCTATATAAAGCACTTAGTGTGC-AA
1 ATCGAGATAGCTTCAGCTATATAAAGCACTTAGTGTGCGAA
* * *
26233713 ATCGAAATAGCTTCGGCTATATAAAGCACTTAGTGTACG-A
1 ATCGAGATAGCTTCAGCTATATAAAGCACTTAGTGTGCGAA
** *
26233753 ATCG-GAATAGCTTCAGCTATATATGGCACTTAGTGTGCGAG
1 ATCGAG-ATAGCTTCAGCTATATAAAGCACTTAGTGTGCGAA
*
26233794 A-CTGAGATAGCTTCAGCTATGA-AAGGCACTTAGTGTGCGAA
1 ATC-GAGATAGCTTCAGCTAT-ATAAAGCACTTAGTGTGCGAA
26233835 AT
1 AT
26233837 TATAATAGCT
Statistics
Matches: 106, Mismatches: 11, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
40 70 0.66
41 34 0.32
42 2 0.02
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (41 bp):
ATCGAGATAGCTTCAGCTATATAAAGCACTTAGTGTGCGAA
Found at i:26237043 original size:18 final size:19
Alignment explanation
Indices: 26237011--26237049 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
26237001 GGATGTCAAA
26237011 CATGCTTTACAAAAATAGT
1 CATGCTTTACAAAAATAGT
*
26237030 CATGCTTT-CAAAAATTGT
1 CATGCTTTACAAAAATAGT
26237048 CA
1 CA
26237050 ATACATATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.33
Consensus pattern (19 bp):
CATGCTTTACAAAAATAGT
Found at i:26252608 original size:6 final size:6
Alignment explanation
Indices: 26252599--26252629 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
26252589 ACTTTTACCT
26252599 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA T
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA T
26252630 CTTCTAGCGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTTA
Found at i:26253865 original size:32 final size:29
Alignment explanation
Indices: 26253804--26253861 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
26253794 TTATAGTCCT
26253804 TCAATAATAAAGCTTCAATCCCTCGAGGA
1 TCAATAATAAAGCTTCAATCCCTCGAGGA
26253833 TCAATAATAAAGCTTCAATCCCTCGAGGA
1 TCAATAATAAAGCTTCAATCCCTCGAGGA
26253862 GGATATCTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.38, C:0.24, G:0.14, T:0.24
Consensus pattern (29 bp):
TCAATAATAAAGCTTCAATCCCTCGAGGA
Found at i:26277402 original size:43 final size:43
Alignment explanation
Indices: 26277322--26277512 Score: 211
Period size: 43 Copynumber: 4.4 Consensus size: 43
26277312 ACGCTATAGG
** * ** *
26277322 AAACGCCATTAAAGGTCATAACCTTTAACGGCTCTTTTCCCAC
1 AAACGCCGCTAAAGGTCATGACCTTTAACAACGCTTTTCCCAC
* *** *
26277365 AAATGTTACTAAAGGTCATGACCTTTAGCAACGCTTTTCCCAC
1 AAACGCCGCTAAAGGTCATGACCTTTAACAACGCTTTTCCCAC
*
26277408 AAACGCCGCTAAAGGTCATGACCTTTAACAGCGCTTTTCCCAC
1 AAACGCCGCTAAAGGTCATGACCTTTAACAACGCTTTTCCCAC
* * * * ** *
26277451 AAACGCCGCTAAAGATCATGACCTTTAGCAATGCTTCTCTTAA
1 AAACGCCGCTAAAGGTCATGACCTTTAACAACGCTTTTCCCAC
26277494 AAACGCCGCTAAAGGTCAT
1 AAACGCCGCTAAAGGTCAT
26277513 AAAATTTTAA
Statistics
Matches: 124, Mismatches: 24, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 124 1.00
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (43 bp):
AAACGCCGCTAAAGGTCATGACCTTTAACAACGCTTTTCCCAC
Found at i:26277432 original size:86 final size:86
Alignment explanation
Indices: 26277322--26277514 Score: 251
Period size: 86 Copynumber: 2.2 Consensus size: 86
26277312 ACGCTATAGG
** * * * ** *
26277322 AAACGCCATTAAAGGTCATAACCTTTAACGGCTCTTTTCCCACAAATGTTACTAAAGGTCATGAC
1 AAACGCCGCTAAAGGTCATAACCTTTAACAGCGCTTTTCCCACAAACGCCACTAAAGATCATGAC
* *
26277387 CTTTAGCAACGCTTTTCCCAC
66 CTTTAGCAACGCTTCTCCCAA
* *
26277408 AAACGCCGCTAAAGGTCATGACCTTTAACAGCGCTTTTCCCACAAACGCCGCTAAAGATCATGAC
1 AAACGCCGCTAAAGGTCATAACCTTTAACAGCGCTTTTCCCACAAACGCCACTAAAGATCATGAC
* **
26277473 CTTTAGCAATGCTTCTCTTAA
66 CTTTAGCAACGCTTCTCCCAA
26277494 AAACGCCGCTAAAGGTCATAA
1 AAACGCCGCTAAAGGTCATAA
26277515 AATTTTAAAA
Statistics
Matches: 91, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
86 91 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.26
Consensus pattern (86 bp):
AAACGCCGCTAAAGGTCATAACCTTTAACAGCGCTTTTCCCACAAACGCCACTAAAGATCATGAC
CTTTAGCAACGCTTCTCCCAA
Found at i:26278718 original size:22 final size:22
Alignment explanation
Indices: 26278693--26278736 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
26278683 TATTTATTTT
*
26278693 TATTTAAAAAAATTATATATAA
1 TATTTAAAAAAATTAAATATAA
* *
26278715 TATTTATAAATATTAAATATAA
1 TATTTAAAAAAATTAAATATAA
26278737 AATATTAATC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
TATTTAAAAAAATTAAATATAA
Found at i:26279113 original size:40 final size:40
Alignment explanation
Indices: 26279058--26279137 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
26279048 AAAAGTGTAT
26279058 ATGGACTTATGACATAGTTTAATCTTCTACAAATCCAAAA
1 ATGGACTTATGACATAGTTTAATCTTCTACAAATCCAAAA
*
26279098 ATGGACTTATGACATATTTTAATCTTCTACAAATCCAAAA
1 ATGGACTTATGACATAGTTTAATCTTCTACAAATCCAAAA
26279138 TAAAGAATAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.34
Consensus pattern (40 bp):
ATGGACTTATGACATAGTTTAATCTTCTACAAATCCAAAA
Found at i:26281576 original size:17 final size:18
Alignment explanation
Indices: 26281550--26281584 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
26281540 ACTAAAATAA
*
26281550 TTAAATATTAT-GAAAAT
1 TTAAAGATTATGGAAAAT
26281567 TTAAAGATTATGGAAAAT
1 TTAAAGATTATGGAAAAT
26281585 ATTATTCATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.51, C:0.00, G:0.11, T:0.37
Consensus pattern (18 bp):
TTAAAGATTATGGAAAAT
Found at i:26282240 original size:8 final size:7
Alignment explanation
Indices: 26282223--26282295 Score: 56
Period size: 7 Copynumber: 10.3 Consensus size: 7
26282213 ATTAATTAAT
26282223 CTAAACC
1 CTAAACC
26282230 CTAAACTC
1 CTAAAC-C
*
26282238 CTAATCC
1 CTAAACC
*
26282245 CTAATCC
1 CTAAACC
*
26282252 CTAATCC
1 CTAAACC
*
26282259 TTAAACC
1 CTAAACC
*
26282266 ATAAACC
1 CTAAACC
* *
26282273 TTAAATC
1 CTAAACC
*
26282280 CTAAAAC
1 CTAAACC
*
26282287 ATAAACC
1 CTAAACC
26282294 CT
1 CT
26282296 TACCTTGAAC
Statistics
Matches: 54, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
7 48 0.89
8 6 0.11
ACGTcount: A:0.41, C:0.34, G:0.00, T:0.25
Consensus pattern (7 bp):
CTAAACC
Found at i:26282722 original size:40 final size:40
Alignment explanation
Indices: 26282623--26282723 Score: 109
Period size: 40 Copynumber: 2.5 Consensus size: 40
26282613 TTTTGTGGAG
* * * *
26282623 TTTTTAAAAA-CGCCGCTAAAGATTGAGTATTAGCGGCGT
1 TTTTTAAAAAGCGCCACTAAAGAGTGAATATTAGCGGCAT
* *
26282662 TTTTTAAAAAGC-ACAGCTAAAG-GTGAATTTATAGCGGCAT
1 TTTTTAAAAAGCGCCA-CTAAAGAGTGAATAT-TAGCGGCAT
26282702 TTTTTAAAAAGCGCCACTAAAG
1 TTTTTAAAAAGCGCCACTAAAG
26282724 CCACAAAAAG
Statistics
Matches: 51, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
39 16 0.31
40 33 0.65
41 2 0.04
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.30
Consensus pattern (40 bp):
TTTTTAAAAAGCGCCACTAAAGAGTGAATATTAGCGGCAT
Found at i:26282989 original size:40 final size:41
Alignment explanation
Indices: 26282939--26283016 Score: 124
Period size: 40 Copynumber: 1.9 Consensus size: 41
26282929 GGCGCTTTTT
*
26282939 AAAAAGCGCCGCTAATGCTC-ATTCTTTAGTGGCGTTTTAAG
1 AAAAAGCGCCGCTAATGCTCGA-TCTATAGTGGCGTTTTAAG
26282980 AAAAA-CGCCGCTAATGCTCGATCTATAGTGGCGTTTT
1 AAAAAGCGCCGCTAATGCTCGATCTATAGTGGCGTTTT
26283017 TCGTTCAAAC
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
40 29 0.83
41 6 0.17
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.31
Consensus pattern (41 bp):
AAAAAGCGCCGCTAATGCTCGATCTATAGTGGCGTTTTAAG
Found at i:26285107 original size:69 final size:69
Alignment explanation
Indices: 26285017--26285302 Score: 319
Period size: 69 Copynumber: 4.1 Consensus size: 69
26285007 TTAAAAAACA
* * * **
26285017 AAACAGTTAGCGAGAGTTAAAAGCTCTAAGCTATCATTTTATGGCTTATAGGTTAAACATCGCAA
1 AAACAATTAGTGAGAGTTAAAAGCTCTAAGCTGTCATTTTATGGCTTGCAGGTTAAACATCGCAA
26285082 CCCT
66 CCCT
* * * * *
26285086 AAACAATTTGTGATAGTTAAAAACTCTCAA-CTGTCATTTCATGGCTTGCAGGTTAAACACCGCA
1 AAACAATTAGTGAGAGTTAAAAGCTCT-AAGCTGTCATTTTATGGCTTGCAGGTTAAACATCGCA
* *
26285150 GCCCC
65 ACCCT
* * *
26285155 AAACAATTAGTGAGAGTTAAAAGCTCCT-AGCTGTCATTTTATGGCTCGTAGGTTGAACA-CGGC
1 AAACAATTAGTGAGAGTTAAAAGCT-CTAAGCTGTCATTTTATGGCTTGCAGGTTAAACATC-GC
*
26285218 AACCTT
64 AACCCT
* * * * *
26285224 AAATAATTAGTGAGAGTTAAAAGCTCCAAGCTGTAATTTTATGACTTGCAAGTTAAACAGT-GCA
1 AAACAATTAGTGAGAGTTAAAAGCTCTAAGCTGTCATTTTATGGCTTGCAGGTTAAACA-TCGCA
26285288 ACCCT
65 ACCCT
26285293 AAACAATTAG
1 AAACAATTAG
26285303 CGAGTGTCAT
Statistics
Matches: 178, Mismatches: 32, Indels: 14
0.79 0.14 0.06
Matches are distributed among these distances:
68 3 0.02
69 171 0.96
70 4 0.02
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (69 bp):
AAACAATTAGTGAGAGTTAAAAGCTCTAAGCTGTCATTTTATGGCTTGCAGGTTAAACATCGCAA
CCCT
Found at i:26285221 original size:138 final size:138
Alignment explanation
Indices: 26285017--26285306 Score: 361
Period size: 138 Copynumber: 2.1 Consensus size: 138
26285007 TTAAAAAACA
* *
26285017 AAACAGTTAGCGAGAGTTAAAAGCTCTAAGCTATCATTTTATGGCTTATAGGTTAAACATCGCAA
1 AAACAATTAGCGAGAGTTAAAAGCTCTAAGCTATCATTTTATGGCTCATAGGTTAAACATCGCAA
* * * * *
26285082 CCCTAAACAATTTGTGATAGTTAAAAACTCTCAA-CTGTCATTTCATGGCTTGCAGGTTAAACAC
66 CCCTAAACAATTAGTGAGAGTTAAAAACTC-CAAGCTGTAATTTCATGACTTGCAAGTTAAACAC
*
26285146 CGCAGCCCC
130 CGCAACCCC
* * * *
26285155 AAACAATTAGTGAGAGTTAAAAGCTCCT-AGCTGTCATTTTATGGCTCGTAGGTTGAACA-CGGC
1 AAACAATTAGCGAGAGTTAAAAGCT-CTAAGCTATCATTTTATGGCTCATAGGTTAAACATC-GC
* * * *
26285218 AACCTTAAATAATTAGTGAGAGTTAAAAGCTCCAAGCTGTAATTTTATGACTTGCAAGTTAAACA
64 AACCCTAAACAATTAGTGAGAGTTAAAAACTCCAAGCTGTAATTTCATGACTTGCAAGTTAAACA
** *
26285283 GTGCAACCCT
129 CCGCAACCCC
26285293 AAACAATTAGCGAG
1 AAACAATTAGCGAG
26285307 TGTCATTTTA
Statistics
Matches: 129, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
137 4 0.03
138 123 0.95
139 2 0.02
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.28
Consensus pattern (138 bp):
AAACAATTAGCGAGAGTTAAAAGCTCTAAGCTATCATTTTATGGCTCATAGGTTAAACATCGCAA
CCCTAAACAATTAGTGAGAGTTAAAAACTCCAAGCTGTAATTTCATGACTTGCAAGTTAAACACC
GCAACCCC
Found at i:26285400 original size:121 final size:121
Alignment explanation
Indices: 26285186--26285423 Score: 300
Period size: 121 Copynumber: 2.0 Consensus size: 121
26285176 AGCTCCTAGC
* * * *
26285186 TGTCATTTTATGGCTCGTAGGTTGAACACGGCAACCTTAAATAATTAGTGAGAGTTAAAAGCTCC
1 TGTCATTTTATGGCTCGCAGGTTGAACACGACAACCTCAAATAATTAGCGAGAGTTAAAAGCTCC
* * *
26285251 AAGCTGTAATTTTATGACTTGCAAGTTAAACAGTGCAACCCTAAACAATTAGCGAG
66 AAGCTATAATTTTATGACTTGCAAGTTAAACACTGCAACCCCAAACAATTAGCGAG
* * * *
26285307 TGTCATTTTATGGCTCGCAGGTT-AAGCACTACAGCCTCAAATAGTTAGCGATAGTTAAAAGCTA
1 TGTCATTTTATGGCTCGCAGGTTGAA-CACGACAACCTCAAATAATTAGCGAGAGTTAAAAGCT-
* * * * *
26285371 TCAA-CTATAATTTTATGGCTTGCAGGTTAAACACTGTAGCCCCAAACAATTAG
64 CCAAGCTATAATTTTATGACTTGCAAGTTAAACACTGCAACCCCAAACAATTAG
26285424 TGAGAGTTAA
Statistics
Matches: 99, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
120 2 0.02
121 94 0.95
122 3 0.03
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.29
Consensus pattern (121 bp):
TGTCATTTTATGGCTCGCAGGTTGAACACGACAACCTCAAATAATTAGCGAGAGTTAAAAGCTCC
AAGCTATAATTTTATGACTTGCAAGTTAAACACTGCAACCCCAAACAATTAGCGAG
Found at i:26285454 original size:69 final size:69
Alignment explanation
Indices: 26285309--26285438 Score: 170
Period size: 69 Copynumber: 1.9 Consensus size: 69
26285299 TTAGCGAGTG
* * * * *
26285309 TCATTTTATGGCTCGCAGGTTAAGCACTACAGCCTCAAATAGTTAGCGATAGTTAAAAGCTATCA
1 TCATTTTATGGCTCGCAGGTTAAACACTACAGCCCCAAACAATTAGCGAGAGTTAAAAGCTATCA
26285374 ACTA
66 ACTA
* * ** *
26285378 TAATTTTATGGCTTGCAGGTTAAACACTGTAGCCCCAAACAATTAGTGAGAGTTAAAAGCT
1 TCATTTTATGGCTCGCAGGTTAAACACTACAGCCCCAAACAATTAGCGAGAGTTAAAAGCT
26285439 CTTAATCATC
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
69 51 1.00
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.29
Consensus pattern (69 bp):
TCATTTTATGGCTCGCAGGTTAAACACTACAGCCCCAAACAATTAGCGAGAGTTAAAAGCTATCA
ACTA
Found at i:26290992 original size:80 final size:80
Alignment explanation
Indices: 26290854--26291024 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
26290844 AAATGTTTTT
* * * * * *
26290854 GCGGCTTTTTTTACAAAGCACCGCTAAAGCTCGATCTATAGCAGTGTTTTTGAAAAAGCACCGCT
1 GCGGCGTTTTTCAAAAAGCACCGCTAAAGCTCGACCTATAGCAGCGTTTTTGAAAAAGCACCACT
* * *
26290919 AGTGCTCGATCTATA
66 AATACTCAATCTATA
* * * * * *
26290934 GCGGCGTTTTTCAAAAAGCGCCGCTAATGGTCGACCTATAGCAGCGTTTTTTAGAAAGCATCACT
1 GCGGCGTTTTTCAAAAAGCACCGCTAAAGCTCGACCTATAGCAGCGTTTTTGAAAAAGCACCACT
26290999 AATACTCAATCTATA
66 AATACTCAATCTATA
26291014 GCGGCGTTTTT
1 GCGGCGTTTTT
26291025 TGTCCAAGCG
Statistics
Matches: 76, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
80 76 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.30
Consensus pattern (80 bp):
GCGGCGTTTTTCAAAAAGCACCGCTAAAGCTCGACCTATAGCAGCGTTTTTGAAAAAGCACCACT
AATACTCAATCTATA
Found at i:26291025 original size:40 final size:40
Alignment explanation
Indices: 26290854--26291025 Score: 175
Period size: 40 Copynumber: 4.3 Consensus size: 40
26290844 AAATGTTTTT
* *
26290854 GCGGCTTTTTTTACAAAGCACCGCTAA-AGCTCGATCTATA
1 GCGGCGTTTTTTAAAAAGCACCGCTAATA-CTCGATCTATA
* * * * *
26290894 GCAGTGTTTTTGAAAAAGCACCGCTAGTGCTCGATCTATA
1 GCGGCGTTTTTTAAAAAGCACCGCTAATACTCGATCTATA
* * ** *
26290934 GCGGCGTTTTTCAAAAAGCGCCGCTAATGGTCGACCTATA
1 GCGGCGTTTTTTAAAAAGCACCGCTAATACTCGATCTATA
* * * * *
26290974 GCAGCGTTTTTTAGAAAGCATCACTAATACTCAATCTATA
1 GCGGCGTTTTTTAAAAAGCACCGCTAATACTCGATCTATA
26291014 GCGGCGTTTTTT
1 GCGGCGTTTTTT
26291026 GTCCAAGCGT
Statistics
Matches: 106, Mismatches: 25, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
40 106 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (40 bp):
GCGGCGTTTTTTAAAAAGCACCGCTAATACTCGATCTATA
Found at i:26297373 original size:17 final size:17
Alignment explanation
Indices: 26297351--26297386 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
26297341 ATTTAATTTT
* *
26297351 AATTAATTAATTTTGTC
1 AATTAAATAATTTTCTC
26297368 AATTAAATAATTTTCTC
1 AATTAAATAATTTTCTC
26297385 AA
1 AA
26297387 CCCAATTCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.42, C:0.08, G:0.03, T:0.47
Consensus pattern (17 bp):
AATTAAATAATTTTCTC
Found at i:26299849 original size:30 final size:30
Alignment explanation
Indices: 26299795--26299854 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
26299785 AACACGGTCA
*
26299795 TGACACACGAGCGTGTAGTCTACCCGTGTG
1 TGACACACGAGCGTGTAGTCTACCCATGTG
* *
26299825 TGACACACGGGCGTGTGGAT-TACCCATGTG
1 TGACACACGAGCGTGTAG-TCTACCCATGTG
26299855 AAAGTGCCTG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.20, C:0.25, G:0.32, T:0.23
Consensus pattern (30 bp):
TGACACACGAGCGTGTAGTCTACCCATGTG
Found at i:26303660 original size:17 final size:18
Alignment explanation
Indices: 26303619--26303681 Score: 58
Period size: 17 Copynumber: 3.5 Consensus size: 18
26303609 GTGGATGGGG
*
26303619 AAGAAAGGAGAAGAATAGAA
1 AAGAAAGGA-AA-AGTAGAA
*
26303639 TAGAAAGGAAAAG-AGAA
1 AAGAAAGGAAAAGTAGAA
* *
26303656 GAGAAA-GAAAAGTGGAA
1 AAGAAAGGAAAAGTAGAA
26303673 AAGAAAGGA
1 AAGAAAGGA
26303682 TGGGGGTGAA
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
16 6 0.17
17 17 0.47
18 3 0.08
19 2 0.06
20 8 0.22
ACGTcount: A:0.63, C:0.00, G:0.32, T:0.05
Consensus pattern (18 bp):
AAGAAAGGAAAAGTAGAA
Found at i:26308383 original size:17 final size:17
Alignment explanation
Indices: 26308352--26308385 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
26308342 GCCTAAATTA
* *
26308352 GCTAGTGCTTTATCAAC
1 GCTAGTGCCTCATCAAC
26308369 GCTAGTGCCTCATCAAC
1 GCTAGTGCCTCATCAAC
26308386 ATTCAAACTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (17 bp):
GCTAGTGCCTCATCAAC
Found at i:26315062 original size:32 final size:32
Alignment explanation
Indices: 26315026--26315191 Score: 170
Period size: 32 Copynumber: 5.1 Consensus size: 32
26315016 TACCCAAATG
* *
26315026 GTACACTTGAAAAGGTTATGTACACTTTGTGT
1 GTACACTTGAAAAGGTTAGGTATACTTTGTGT
* **
26315058 GTACACTTGAAAAGGTTATGTGCACTTTGTGT
1 GTACACTTGAAAAGGTTAGGTATACTTTGTGT
* *
26315090 GTACACTTGGAAATGTTAGGTATACTTTGTGT
1 GTACACTTGAAAAGGTTAGGTATACTTTGTGT
* * ** *
26315122 ATACCATTTGAAAAGGAAAGGTATACTTAGTGT
1 GTA-CACTTGAAAAGGTTAGGTATACTTTGTGT
* * **
26315155 ATACCATTTGAAAAGGAAAGGTATACTTTGTGT
1 GTA-CACTTGAAAAGGTTAGGTATACTTTGTGT
26315188 GTAC
1 GTAC
26315192 CATTTGGAAA
Statistics
Matches: 118, Mismatches: 15, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
32 61 0.52
33 57 0.48
ACGTcount: A:0.31, C:0.11, G:0.23, T:0.36
Consensus pattern (32 bp):
GTACACTTGAAAAGGTTAGGTATACTTTGTGT
Found at i:26315148 original size:33 final size:33
Alignment explanation
Indices: 26315107--26315202 Score: 165
Period size: 33 Copynumber: 2.9 Consensus size: 33
26315097 TGGAAATGTT
26315107 AGGTATACTTTGTGTATACCATTTGAAAAGGAA
1 AGGTATACTTTGTGTATACCATTTGAAAAGGAA
*
26315140 AGGTATACTTAGTGTATACCATTTGAAAAGGAA
1 AGGTATACTTTGTGTATACCATTTGAAAAGGAA
* *
26315173 AGGTATACTTTGTGTGTACCATTTGGAAAG
1 AGGTATACTTTGTGTATACCATTTGAAAAG
26315203 AAACGTACAC
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 59 1.00
ACGTcount: A:0.34, C:0.09, G:0.23, T:0.33
Consensus pattern (33 bp):
AGGTATACTTTGTGTATACCATTTGAAAAGGAA
Found at i:26322959 original size:20 final size:21
Alignment explanation
Indices: 26322920--26322959 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
26322910 CACCAAGTGA
26322920 AAGCATTTACATGAACAACTTC
1 AAGCATTTACAT-AACAACTTC
*
26322942 AAGCATTTATAT-ACAACT
1 AAGCATTTACATAACAACT
26322960 ATGTTCTAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
22 11 0.65
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.30
Consensus pattern (21 bp):
AAGCATTTACATAACAACTTC
Found at i:26331335 original size:70 final size:70
Alignment explanation
Indices: 26331256--26331543 Score: 351
Period size: 70 Copynumber: 4.1 Consensus size: 70
26331246 AGATTATTTG
** * * * * * *
26331256 TGTGCCCAGCACTAGTAAAAAAAGTTAACAAATTATTGCGCCCAGCTCTAGTCAGATAACCGATG
1 TGTGCCCAGCACTAGTTGAACAAGTCAACAAATTATTACGCCCAACGCTAGTCGGATAACCGATG
*
26331321 ATTGT
66 ATAGT
* * *** ** *
26331326 TGTGCCCAGCACTAGTCGAACAAGTCGACAAATTATTGTTCCCAGTGCTAGTCGGATAACCGAAG
1 TGTGCCCAGCACTAGTTGAACAAGTCAACAAATTATTACGCCCAACGCTAGTCGGATAACCGATG
26331391 ATAGT
66 ATAGT
* * *
26331396 TGTGCCCAGCACTAGTTGAACGAGTCAACAAATTATTATGCCTAACGCTAGTCGGATAACCGATG
1 TGTGCCCAGCACTAGTTGAACAAGTCAACAAATTATTACGCCCAACGCTAGTCGGATAACCGATG
26331461 ATAGT
66 ATAGT
* * * * *
26331466 TGTGCCTAGCACTAGTTGAACGAGTCAACAAATTATCACACCAAACGCTAGTCGGATAACCGATG
1 TGTGCCCAGCACTAGTTGAACAAGTCAACAAATTATTACGCCCAACGCTAGTCGGATAACCGATG
26331531 ATAGT
66 ATAGT
26331536 TGTGCCCA
1 TGTGCCCA
26331544 CCAAGAATTA
Statistics
Matches: 191, Mismatches: 27, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
70 191 1.00
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (70 bp):
TGTGCCCAGCACTAGTTGAACAAGTCAACAAATTATTACGCCCAACGCTAGTCGGATAACCGATG
ATAGT
Found at i:26331341 original size:34 final size:33
Alignment explanation
Indices: 26331295--26331411 Score: 99
Period size: 34 Copynumber: 3.4 Consensus size: 33
26331285 AAATTATTGC
* *
26331295 GCCCAGCTCTAGTCAGATAACCGATGATTGTTGT
1 GCCCAGCACTAGTC-GATAACCGAAGATTGTTGT
* * * *
26331329 GCCCAGCACTAGTCGAACAAGTCGACAAATTATTGT
1 GCCCAGCACTAGTCG-ATAA-CCGA-AGATTGTTGT
* ** *
26331365 TCCCAGTGCTAGTCGGATAACCGAAGATAGTTGT
1 GCCCAGCACTAGTC-GATAACCGAAGATTGTTGT
26331399 GCCCAGCACTAGT
1 GCCCAGCACTAGT
26331412 TGAACGAGTC
Statistics
Matches: 62, Mismatches: 17, Indels: 8
0.71 0.20 0.09
Matches are distributed among these distances:
33 1 0.02
34 33 0.53
35 6 0.10
36 21 0.34
37 1 0.02
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (33 bp):
GCCCAGCACTAGTCGATAACCGAAGATTGTTGT
Found at i:26331481 original size:34 final size:34
Alignment explanation
Indices: 26331373--26331481 Score: 80
Period size: 34 Copynumber: 3.1 Consensus size: 34
26331363 GTTCCCAGTG
* *
26331373 CTAGTCGGATAACCGAAGATAGTTGTGCCCAGCA
1 CTAGTCGGATAACCGATGATAGTTGTGCCTAGCA
* ** * * *
26331407 CTAGTTGAACGAGTCAACAAAT--TA-TTATGCCTAACG
1 CTAGTCG---GA-T-AACCGATGATAGTTGTGCCTAGCA
26331443 CTAGTCGGATAACCGATGATAGTTGTGCCTAGCA
1 CTAGTCGGATAACCGATGATAGTTGTGCCTAGCA
26331477 CTAGT
1 CTAGT
26331482 TGAACGAGTC
Statistics
Matches: 53, Mismatches: 14, Indels: 16
0.64 0.17 0.19
Matches are distributed among these distances:
31 5 0.09
32 1 0.02
33 4 0.08
34 20 0.38
36 14 0.26
37 4 0.08
38 1 0.02
39 4 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (34 bp):
CTAGTCGGATAACCGATGATAGTTGTGCCTAGCA
Found at i:26332089 original size:26 final size:26
Alignment explanation
Indices: 26332060--26332167 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
26332050 TGGTACAAAT
26332060 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
26332086 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
26332112 TGATAATAGGTTAGGTAAATGTTCCG
1 TGATAATGGGTTAGGTAAATGTTCCA
*
26332138 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26332164 TGAT
1 TGAT
26332168 GGGCATTTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:26340916 original size:15 final size:15
Alignment explanation
Indices: 26340896--26340926 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
26340886 GCTCCAATGC
26340896 ATTATGTGAGAAGAT
1 ATTATGTGAGAAGAT
26340911 ATTATGTGAGAAGAT
1 ATTATGTGAGAAGAT
26340926 A
1 A
26340927 ACCAAAACCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.26, T:0.32
Consensus pattern (15 bp):
ATTATGTGAGAAGAT
Found at i:26345803 original size:6 final size:6
Alignment explanation
Indices: 26345792--26345830 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
26345782 CTTCAGCTAT
** *
26345792 ATCCTC ATCCTC ATCCTC CCCCTC ATCATC ATCCTC ATC
1 ATCCTC ATCCTC ATCCTC ATCCTC ATCCTC ATCCTC ATC
26345831 ATCCTCCCCA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.18, C:0.51, G:0.00, T:0.31
Consensus pattern (6 bp):
ATCCTC
Found at i:26345823 original size:24 final size:24
Alignment explanation
Indices: 26345796--26345845 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
26345786 AGCTATATCC
*
26345796 TCATCCTCATCCTCC-CCCTCATCA
1 TCATCCTCATCATCCTCCC-CATCA
26345820 TCATCCTCATCATCCTCCCCATCA
1 TCATCCTCATCATCCTCCCCATCA
26345844 TC
1 TC
26345846 TGCCATGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 21 0.88
25 3 0.12
ACGTcount: A:0.18, C:0.52, G:0.00, T:0.30
Consensus pattern (24 bp):
TCATCCTCATCATCCTCCCCATCA
Found at i:26345831 original size:12 final size:12
Alignment explanation
Indices: 26345796--26345867 Score: 58
Period size: 12 Copynumber: 6.0 Consensus size: 12
26345786 AGCTATATCC
*
26345796 TCATCCTCATCC
1 TCATCCTCATCA
**
26345808 TCCCCCTCATCA
1 TCATCCTCATCA
26345820 TCATCCTCATCA
1 TCATCCTCATCA
* *
26345832 TCCTCCCCATCA
1 TCATCCTCATCA
*
26345844 TC-TGCCAT-GTCA
1 TCAT-CC-TCATCA
26345856 TCATCCTCATCA
1 TCATCCTCATCA
26345868 GCCATATCAT
Statistics
Matches: 46, Mismatches: 10, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
11 2 0.04
12 43 0.93
13 1 0.02
ACGTcount: A:0.19, C:0.47, G:0.03, T:0.31
Consensus pattern (12 bp):
TCATCCTCATCA
Found at i:26345865 original size:21 final size:21
Alignment explanation
Indices: 26345841--26345881 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
26345831 ATCCTCCCCA
* *
26345841 TCATCTGCCATGTCATCATCC
1 TCATCAGCCATATCATCATCC
26345862 TCATCAGCCATATCATCATC
1 TCATCAGCCATATCATCATC
26345882 TGCCCTATTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.37, G:0.07, T:0.32
Consensus pattern (21 bp):
TCATCAGCCATATCATCATCC
Done.