Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 78 of 313
Found at i:26345879 original size:36 final size:36
Alignment explanation
Indices: 26345817--26345885 Score: 95
Period size: 36 Copynumber: 1.9 Consensus size: 36
26345807 CTCCCCCTCA
* *
26345817 TCATCATCCTCATCATCCTCCCCATCATCTGCCATG
1 TCATCATCCTCATCAGCCTCACCATCATCTGCCATG
*
26345853 TCATCATCCTCATCAGCCAT-ATCATCATCTGCC
1 TCATCATCCTCATCAGCC-TCACCATCATCTGCC
26345886 CTATTCTCCA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
36 28 0.97
37 1 0.03
ACGTcount: A:0.22, C:0.42, G:0.06, T:0.30
Consensus pattern (36 bp):
TCATCATCCTCATCAGCCTCACCATCATCTGCCATG
Found at i:26354205 original size:81 final size:80
Alignment explanation
Indices: 26354112--26354272 Score: 304
Period size: 81 Copynumber: 2.0 Consensus size: 80
26354102 GGAGAAGCTA
*
26354112 TAGAAAGAGTGTATTCTAAATATTTATAGTCAAAAAAGAAAAATATTTAGTAAATTAAAAATAAT
1 TAGAAAAAGTGTATTCTAAATATTTATAGTCAAAAAAGAAAAATATTTAGTAAATTAAAAATAAT
26354177 AATATGAAGTCTAGC
66 AATATGAAGTCTAGC
26354192 NTAGAAAAAGTGTATTCTAAATATTTATAGTCAAAAAAGAAAAATATTTAGTAAATTAAAAATAA
1 -TAGAAAAAGTGTATTCTAAATATTTATAGTCAAAAAAGAAAAATATTTAGTAAATTAAAAATAA
26354257 TAATATGAAGTCTAGC
65 TAATATGAAGTCTAGC
26354273 AAAATAATAA
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 79 1.00
ACGTcount: A:0.52, C:0.05, G:0.12, T:0.31
Consensus pattern (80 bp):
TAGAAAAAGTGTATTCTAAATATTTATAGTCAAAAAAGAAAAATATTTAGTAAATTAAAAATAAT
AATATGAAGTCTAGC
Found at i:26358587 original size:9 final size:9
Alignment explanation
Indices: 26358570--26358695 Score: 76
Period size: 10 Copynumber: 13.2 Consensus size: 9
26358560 TTTTATAAAC
26358570 TTATAAAAA
1 TTATAAAAA
26358579 TTATGAAAAAA
1 TTAT--AAAAA
**
26358590 ACATAAAAAA
1 TTAT-AAAAA
*
26358600 ATATAAAAA
1 TTATAAAAA
26358609 CTTATAAAAA
1 -TTATAAAAA
* *
26358619 ATCTAAACAA
1 TTATAAA-AA
26358629 TTTATAAAAA
1 -TTATAAAAA
* *
26358639 ATATTAATAA
1 TTA-TAAAAA
*
26358649 TTATAAAAC
1 TTATAAAAA
26358658 TTATATAAAA
1 TTATA-AAAA
*
26358668 TT-TTAAAA
1 TTATAAAAA
26358676 TTAT-AAAA
1 TTATAAAAA
26358684 TATATAAAAA
1 T-TATAAAAA
26358694 TT
1 TT
26358696 CATTTATTAG
Statistics
Matches: 92, Mismatches: 15, Indels: 20
0.72 0.12 0.16
Matches are distributed among these distances:
8 11 0.12
9 31 0.34
10 38 0.41
11 12 0.13
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.33
Consensus pattern (9 bp):
TTATAAAAA
Found at i:26358689 original size:27 final size:27
Alignment explanation
Indices: 26358630--26358695 Score: 82
Period size: 27 Copynumber: 2.4 Consensus size: 27
26358620 TCTAAACAAT
*
26358630 TTATAAAAAATATTAATAATTATAAAAC
1 TTAT-AAAAATTTTAATAATTATAAAAC
26358658 TTATATAAAATTTTAA-AATTATAAAA-
1 TTATA-AAAATTTTAATAATTATAAAAC
26358684 TATATAAAAATT
1 T-TATAAAAATT
26358696 CATTTATTAG
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
26 7 0.20
27 15 0.43
28 13 0.37
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (27 bp):
TTATAAAAATTTTAATAATTATAAAAC
Found at i:26363635 original size:18 final size:18
Alignment explanation
Indices: 26363614--26363681 Score: 59
Period size: 18 Copynumber: 3.8 Consensus size: 18
26363604 TTTATAAGCT
26363614 ATTTTTTATAAATTTATA
1 ATTTTTTATAAATTTATA
* *
26363632 ATTTTTTATAATCTTTAAA
1 ATTTTTTATAA-ATTTATA
* * *
26363651 AGTTTATATCAATTT-TA
1 ATTTTTTATAAATTTATA
*
26363668 ATATTTT-TAAATTT
1 ATTTTTTATAAATTT
26363682 TTTTAATAAA
Statistics
Matches: 38, Mismatches: 11, Indels: 4
0.72 0.21 0.08
Matches are distributed among these distances:
16 6 0.16
17 5 0.13
18 14 0.37
19 13 0.34
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.59
Consensus pattern (18 bp):
ATTTTTTATAAATTTATA
Found at i:26367299 original size:43 final size:44
Alignment explanation
Indices: 26367238--26367330 Score: 145
Period size: 43 Copynumber: 2.2 Consensus size: 44
26367228 TTCTAATTGG
*
26367238 GAAAATAGTTCTCTTATTCTAATAAACTACTAAAACATAAAA-A
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
* *
26367281 GAAAATAGTTCCCTTATTCTAGTAAACTACTAAAAGATAAAATA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
26367325 -AAAATA
1 GAAAATA
26367331 TTTCTAGAAT
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
43 45 0.98
44 1 0.02
ACGTcount: A:0.52, C:0.13, G:0.06, T:0.29
Consensus pattern (44 bp):
GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
Found at i:26367367 original size:19 final size:19
Alignment explanation
Indices: 26367343--26367387 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
26367333 TCTAGAATAT
26367343 AAATAAAACTTATCTACCC
1 AAATAAAACTTATCTACCC
* * *
26367362 AAATAAGATTTATCTACCT
1 AAATAAAACTTATCTACCC
26367381 AAATAAA
1 AAATAAA
26367388 TTTAAAATAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.51, C:0.18, G:0.02, T:0.29
Consensus pattern (19 bp):
AAATAAAACTTATCTACCC
Found at i:26372038 original size:43 final size:44
Alignment explanation
Indices: 26371977--26372074 Score: 155
Period size: 43 Copynumber: 2.3 Consensus size: 44
26371967 TCTTAATTGG
26371977 GAAAATAGTTCTCTTATTCTAATAAACTACTAAAACATAAAA-A
1 GAAAATAGTTCTCTTATTCTAATAAACTACTAAAACATAAAATA
* *
26372020 GAAAATAGTTCTCTTATTCTAGTAAACTACTAAAAGATAAAATA
1 GAAAATAGTTCTCTTATTCTAATAAACTACTAAAACATAAAATA
*
26372064 -AAAATATTTCT
1 GAAAATAGTTCT
26372075 AGAATATGAA
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
43 50 0.98
44 1 0.02
ACGTcount: A:0.49, C:0.12, G:0.06, T:0.33
Consensus pattern (44 bp):
GAAAATAGTTCTCTTATTCTAATAAACTACTAAAACATAAAATA
Found at i:26372113 original size:19 final size:18
Alignment explanation
Indices: 26372091--26372130 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
26372081 TGAATAAAAC
26372091 TTATCTACCCAAATAAGAT
1 TTATCTACCCAAATAA-AT
*
26372110 TTATCTACCTAAATAAAT
1 TTATCTACCCAAATAAAT
26372128 TTA
1 TTA
26372131 AAATATATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.42, C:0.17, G:0.03, T:0.38
Consensus pattern (18 bp):
TTATCTACCCAAATAAAT
Found at i:26374569 original size:21 final size:21
Alignment explanation
Indices: 26374530--26374569 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
26374520 ATATCACTTG
*
26374530 TTATATATTTTTTAAAAATAA
1 TTATATATTTTATAAAAATAA
* *
26374551 TTATTTATTTTATACAAAT
1 TTATATATTTTATAAAAAT
26374570 TACAAATGGG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (21 bp):
TTATATATTTTATAAAAATAA
Found at i:26382279 original size:117 final size:121
Alignment explanation
Indices: 26382136--26382378 Score: 413
Period size: 119 Copynumber: 2.0 Consensus size: 121
26382126 TAAAATGCTG
**
26382136 ATTCAATTTTTTGTCACTGGATTCTGATTCATTGTTCCTTTG-TTT-TAGCTTGATCAACCTTTC
1 ATTCAATTTTTTGTCACTGGATTCTGATTCATTGTTCCCATGTTTTCTAGCTTGATCAACCTTTC
26382199 TAGATGAATAAACTTACCAGAAGGGATTGCTAC-AA-AAGTATATACATTGTAAGT
66 TAGATGAATAAACTTACCAGAAGGGATTGCTACAAAGAAGTATATACATTGTAAGT
*
26382253 ATTCAATTTTTTGTCACTGGATTCTGATTCATTGTTCCCATGTTTTCTAGCTTGATGAACCTTTC
1 ATTCAATTTTTTGTCACTGGATTCTGATTCATTGTTCCCATGTTTTCTAGCTTGATCAACCTTTC
26382318 TAGATGAATAAACTTACCAGAAGGGATTGCTACAAATGGAAGTATATACATTGTAAGT
66 TAGATGAATAAACTTACCAGAAGGGATTGCTACAAA--GAAGTATATACATTGTAAGT
26382376 ATT
1 ATT
26382379 TAAGCAACCG
Statistics
Matches: 117, Mismatches: 3, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
117 40 0.34
118 3 0.03
119 50 0.43
120 2 0.02
123 22 0.19
ACGTcount: A:0.29, C:0.15, G:0.16, T:0.40
Consensus pattern (121 bp):
ATTCAATTTTTTGTCACTGGATTCTGATTCATTGTTCCCATGTTTTCTAGCTTGATCAACCTTTC
TAGATGAATAAACTTACCAGAAGGGATTGCTACAAAGAAGTATATACATTGTAAGT
Found at i:26388202 original size:18 final size:18
Alignment explanation
Indices: 26388149--26388219 Score: 97
Period size: 18 Copynumber: 3.9 Consensus size: 18
26388139 ACCGTTTACA
*
26388149 GTACTATTTACGTATACA
1 GTACTATTTACGTATACG
**
26388167 ACACTATTTACGTATACG
1 GTACTATTTACGTATACG
26388185 GTACTATTTACGTATACG
1 GTACTATTTACGTATACG
* *
26388203 GTACTGTTCACGTATAC
1 GTACTATTTACGTATAC
26388220 AGTAGTTGGG
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 46 1.00
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.37
Consensus pattern (18 bp):
GTACTATTTACGTATACG
Found at i:26396759 original size:21 final size:21
Alignment explanation
Indices: 26396735--26396780 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
26396725 TGCAGAAGAC
26396735 GTAAGAAGACGATTACCAGTG
1 GTAAGAAGACGATTACCAGTG
*
26396756 GTAAGAAGATGATTACCAGTG
1 GTAAGAAGACGATTACCAGTG
26396777 GTAA
1 GTAA
26396781 CGGAAGCTGC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.39, C:0.11, G:0.28, T:0.22
Consensus pattern (21 bp):
GTAAGAAGACGATTACCAGTG
Found at i:26405211 original size:30 final size:32
Alignment explanation
Indices: 26405135--26405213 Score: 78
Period size: 30 Copynumber: 2.6 Consensus size: 32
26405125 GCGAAGAAAT
* *
26405135 TTTTTTTACCAACTTTTAATGGGTCAAAAAAG
1 TTTTTTTACCGACTTTTAATGGGGCAAAAAAG
**
26405167 TTTTTTTTA--G-CTTTTAA-GGGGCCCAAAA-
1 -TTTTTTTACCGACTTTTAATGGGGCAAAAAAG
26405195 TTTTTTTACCGACTTTTAA
1 TTTTTTTACCGACTTTTAA
26405214 AAGACCTAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
27 8 0.21
29 9 0.23
30 14 0.36
33 8 0.21
ACGTcount: A:0.28, C:0.14, G:0.13, T:0.46
Consensus pattern (32 bp):
TTTTTTTACCGACTTTTAATGGGGCAAAAAAG
Found at i:26408807 original size:18 final size:18
Alignment explanation
Indices: 26408756--26408821 Score: 93
Period size: 18 Copynumber: 3.8 Consensus size: 18
26408746 CTCCAGCTCC
*
26408756 TCACTATCATCAATAGCG
1 TCACTATCATCAATATCG
*
26408774 TCACTAGCATCAATATCG
1 TCACTATCATCAATATCG
26408792 TCACTATCATCAATATCG
1 TCACTATCATCAATATCG
26408810 --A-TATCATCAATA
1 TCACTATCATCAATA
26408822 AGAAAACCTT
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
15 11 0.24
16 1 0.02
18 33 0.73
ACGTcount: A:0.36, C:0.26, G:0.08, T:0.30
Consensus pattern (18 bp):
TCACTATCATCAATATCG
Found at i:26417137 original size:62 final size:62
Alignment explanation
Indices: 26417041--26417168 Score: 229
Period size: 62 Copynumber: 2.1 Consensus size: 62
26417031 CTTTCTTCTT
* *
26417041 TTTTTTTTTTGGGGTGGGGGGGGGGGGGGGGGTCATTGGCAGATTGCCAGACGTGATCCTCC
1 TTTTTTTTTTGGGGTGGGGGGGGGGGGGAGGGTCATTGGCAGATTGCAAGACGTGATCCTCC
*
26417103 TTTTTTTTTTGGGGTGGGGGGGTGGGGGAGGGTCATTGGCAGATTGCAAGACGTGATCCTCC
1 TTTTTTTTTTGGGGTGGGGGGGGGGGGGAGGGTCATTGGCAGATTGCAAGACGTGATCCTCC
26417165 TTTT
1 TTTT
26417169 ATGTCTATGA
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.11, C:0.13, G:0.42, T:0.34
Consensus pattern (62 bp):
TTTTTTTTTTGGGGTGGGGGGGGGGGGGAGGGTCATTGGCAGATTGCAAGACGTGATCCTCC
Found at i:26425816 original size:25 final size:25
Alignment explanation
Indices: 26425788--26425839 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
26425778 CTTATGCAAT
*
26425788 ATGTAGCATCATTTATAATAGTGAA
1 ATGTAGCATCATTTATAATAGTAAA
26425813 ATGTAGCATCATTTATAATAGTAAA
1 ATGTAGCATCATTTATAATAGTAAA
26425838 AT
1 AT
26425840 TCATAGCCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.42, C:0.08, G:0.13, T:0.37
Consensus pattern (25 bp):
ATGTAGCATCATTTATAATAGTAAA
Found at i:26429049 original size:50 final size:50
Alignment explanation
Indices: 26428992--26429113 Score: 235
Period size: 50 Copynumber: 2.4 Consensus size: 50
26428982 AGATGTGTCA
26428992 GTGTAAGACCATGTCTGGGACACGACATCAGAATAGATATGCTAGAGCTT
1 GTGTAAGACCATGTCTGGGACACGACATCAGAATAGATATGCTAGAGCTT
*
26429042 GTGTAAGACCATGTTTGGGACACGACATCAGAATAGATATGCTAGAGCTT
1 GTGTAAGACCATGTCTGGGACACGACATCAGAATAGATATGCTAGAGCTT
26429092 GTGTAAGACCATGTCTGGGACA
1 GTGTAAGACCATGTCTGGGACA
26429114 TGGCATTGGC
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
50 70 1.00
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (50 bp):
GTGTAAGACCATGTCTGGGACACGACATCAGAATAGATATGCTAGAGCTT
Found at i:26432006 original size:55 final size:53
Alignment explanation
Indices: 26431922--26432172 Score: 210
Period size: 55 Copynumber: 4.7 Consensus size: 53
26431912 AGGGTTTAAT
* *
26431922 GATACCATGTAAGAACATGCCAAGGCATGGTAATTGGTAAGGTTTCTAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAA-GTTTCTAAGGCAAG
* * * * *
26431977 GATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAT
1 GATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTT--TCTAAGGC-AAG
* * * * * *
26432033 G-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-CTCATAAGGCAAT
1 GATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTC-TAAGGCAAG
* * * *
26432085 GATACCATGTAAGACCATGTCGAGACATGTCAA-TGATAAGTTTC-AA---AAG
1 GATACCATGTAAGACCATGCCAAGACATG-GAATTGGTAAGTTTCTAAGGCAAG
* * *
26432134 GATACCATGTAAGACCATGACAAGTCATGGAAATGGTAA
1 GATACCATGTAAGACCATGCCAAGACATGGAATTGGTAA
26432173 TGTACTCATG
Statistics
Matches: 159, Mismatches: 29, Indels: 22
0.76 0.14 0.10
Matches are distributed among these distances:
48 2 0.01
49 33 0.21
52 7 0.04
53 37 0.23
54 10 0.06
55 67 0.42
56 3 0.02
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (53 bp):
GATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTCTAAGGCAAG
Found at i:26432122 original size:108 final size:110
Alignment explanation
Indices: 26431926--26432126 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
26431916 TTTAATGATA
*
26431926 CCATGTAAGAACATGCCAAGGCATGGTAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
1 CCATGTAAGAACATGCCAAGGCATGGTAATTGGTAAGGTCTCTAAGGCAAGGATACCATGTAAGA
*
26431991 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAATGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAATGTC
* * * *
26432036 CCATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-CTCATAAGGCAATGATACCATGTAAG
1 CCATGTAAGAACATGCCAAGGCATGGTAATTGGTAAGGTCTC-TAAGGCAAGGATACCATGTAAG
* *
26432098 ACCATGTCGAGACATGTCAATGATAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
26432127 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 2 0.02
108 48 0.59
109 7 0.09
110 25 0.30
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (110 bp):
CCATGTAAGAACATGCCAAGGCATGGTAATTGGTAAGGTCTCTAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAATGTC
Found at i:26432386 original size:16 final size:16
Alignment explanation
Indices: 26432365--26432395 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26432355 ATAAATTTGA
26432365 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
26432381 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
26432396 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:26454366 original size:36 final size:36
Alignment explanation
Indices: 26454319--26454415 Score: 115
Period size: 36 Copynumber: 2.7 Consensus size: 36
26454309 ATATCAAATG
* **
26454319 TGTGCCTAGCACTAGCCGGATAAACCGAC-AATGATT
1 TGTGCCTAGCACTAGTCGGATAAACAAACGAA-GATT
* * *
26454355 TGTGCCTAGCACTAATTGGATATACAAACGAAGATT
1 TGTGCCTAGCACTAGTCGGATAAACAAACGAAGATT
*
26454391 TGTGCCTAGCACTAGTCGAATAAAC
1 TGTGCCTAGCACTAGTCGGATAAAC
26454416 TGACGATATC
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
36 48 0.96
37 2 0.04
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.25
Consensus pattern (36 bp):
TGTGCCTAGCACTAGTCGGATAAACAAACGAAGATT
Found at i:26454453 original size:76 final size:76
Alignment explanation
Indices: 26454355--26454579 Score: 252
Period size: 76 Copynumber: 3.0 Consensus size: 76
26454345 GACAATGATT
* * * *
26454355 TGTGCCTAGCACTAATTGGATATACAAACGAAGATTTGTGCCTAGCACTAGTCGAATAAACTGAC
1 TGTGCCTAGCACTAGTTGGATATACAAACGAAGATTTGCGCCCAGCACTAGTCGAATAAACCGAC
26454420 GATATCAAATA
66 GATATCAAATA
* * * * *** *
26454431 TGTGCCCAGCACTAGTTGGATATACCAACAAAGATTTACGCCCAATGCTAGTCGAATAAACCAAC
1 TGTGCCTAGCACTAGTTGGATATACAAACGAAGATTTGCGCCCAGCACTAGTCGAATAAACCGAC
*
26454496 GATATCATATA
66 GATATCAAATA
* ** ** * * * *
26454507 TGTACCTAGCTTTAGTTGGATATACTGACGAAGATTCGCGCCCGGCACTAGTCGGATAAACGGAC
1 TGTGCCTAGCACTAGTTGGATATACAAACGAAGATTTGCGCCCAGCACTAGTCGAATAAACCGAC
26454572 GATATCAA
66 GATATCAA
26454580 TCACTCCTTT
Statistics
Matches: 119, Mismatches: 30, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
76 119 1.00
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (76 bp):
TGTGCCTAGCACTAGTTGGATATACAAACGAAGATTTGCGCCCAGCACTAGTCGAATAAACCGAC
GATATCAAATA
Found at i:26454497 original size:112 final size:112
Alignment explanation
Indices: 26454290--26454497 Score: 236
Period size: 112 Copynumber: 1.9 Consensus size: 112
26454280 GCATCAAGCG
* * * *
26454290 CTAGTCAAACAAACTGACGATATCAAATGTGTGCCTAGCACTAGCCGGATAAACCGACAATGATT
1 CTAGTCAAACAAACTGACGATATCAAATATGTGCCCAGCACTAGCCGGATAAACCAACAAAGATT
** * * * * *
26454355 TGTGCCTAGCACTAATTGGATATACAAACGAAGATTTGTGCCTAGCA
66 TACGCCCAACACTAATCGAATAAACAAACGAAGATTTGTGCCTAGCA
* * ** *
26454402 CTAGTCGAATAAACTGACGATATCAAATATGTGCCCAGCACTAGTTGGATATACCAACAAAGATT
1 CTAGTCAAACAAACTGACGATATCAAATATGTGCCCAGCACTAGCCGGATAAACCAACAAAGATT
** * *
26454467 TACGCCCAATGCTAGTCGAATAAACCAACGA
66 TACGCCCAACACTAATCGAATAAACAAACGA
26454498 TATCATATAT
Statistics
Matches: 76, Mismatches: 20, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
112 76 1.00
ACGTcount: A:0.37, C:0.22, G:0.18, T:0.23
Consensus pattern (112 bp):
CTAGTCAAACAAACTGACGATATCAAATATGTGCCCAGCACTAGCCGGATAAACCAACAAAGATT
TACGCCCAACACTAATCGAATAAACAAACGAAGATTTGTGCCTAGCA
Found at i:26458721 original size:49 final size:49
Alignment explanation
Indices: 26458660--26458833 Score: 170
Period size: 49 Copynumber: 3.6 Consensus size: 49
26458650 TGGATCACTG
* *
26458660 GTAGGGCATGTTAGTTGCTAACCAGCTTGGCGGATGTGATAGACCATTT
1 GTAGGGCATGTTAGTTGCTAACCAGATTGGCGGATGTGATAGACCATTA
* * * * ** * * * *
26458709 GTAAGGCATGTTAGTTTCTAACCAGATAGGCGAATAAGGTGGGCCATTG
1 GTAGGGCATGTTAGTTGCTAACCAGATTGGCGGATGTGATAGACCATTA
* * *
26458758 GTAGGGCATGTTAGTTGCTAACTAGATTGGC-GAAGATGATAGACCACTA
1 GTAGGGCATGTTAGTTGCTAACCAGATTGGCGGATG-TGATAGACCATTA
* * *
26458807 GCAGGGTATGTTAGTTGCTAATCAGAT
1 GTAGGGCATGTTAGTTGCTAACCAGAT
26458834 CCGTAAATAA
Statistics
Matches: 96, Mismatches: 28, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
48 1 0.01
49 95 0.99
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (49 bp):
GTAGGGCATGTTAGTTGCTAACCAGATTGGCGGATGTGATAGACCATTA
Found at i:26458818 original size:98 final size:98
Alignment explanation
Indices: 26458655--26458885 Score: 275
Period size: 98 Copynumber: 2.4 Consensus size: 98
26458645 TAAGATGGAT
* * * * * *
26458655 CACTGGTAGGGCATGTTAGTTGCTAACCAGCTTGGCGGATGTGATAGACCATTTGTAAGGCATGT
1 CACTGGTAGGGCATGTTAGTTGCTAACTAGATTGGCGGAAGTGATAGACCACTAGCAAGGCATGT
* * *
26458720 TAGTTTCTAACCAGATAGGCGAATAAGGTGGGC
66 TAGTTGCTAACCAGATACGCAAATAAGGTGGGC
* * *
26458753 CATTGGTAGGGCATGTTAGTTGCTAACTAGATTGGC-GAAGATGATAGACCACTAGCAGGGTATG
1 CACTGGTAGGGCATGTTAGTTGCTAACTAGATTGGCGGAAG-TGATAGACCACTAGCAAGGCATG
* * *
26458817 TTAGTTGCTAATCAGATCCGTAAATAAGGTGGGC
65 TTAGTTGCTAACCAGATACGCAAATAAGGTGGGC
* * * *
26458851 CACTAGTTGGTCATGTTAATTGCTAACTAGATTGG
1 CACTGGTAGGGCATGTTAGTTGCTAACTAGATTGG
26458886 TGTAAGTGCT
Statistics
Matches: 112, Mismatches: 20, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
97 3 0.03
98 109 0.97
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (98 bp):
CACTGGTAGGGCATGTTAGTTGCTAACTAGATTGGCGGAAGTGATAGACCACTAGCAAGGCATGT
TAGTTGCTAACCAGATACGCAAATAAGGTGGGC
Found at i:26460747 original size:24 final size:24
Alignment explanation
Indices: 26460720--26460807 Score: 81
Period size: 25 Copynumber: 3.6 Consensus size: 24
26460710 TTCTCTATAT
26460720 TGGCTCATATGAGCTTCCCGTTAA
1 TGGCTCATATGAGCTTCCCGTTAA
*
26460744 TGGCTC-TCTGGAGCTTCCCGTTATA
1 TGGCTCATAT-GAGCTTCCCGTTA-A
* * *
26460769 TGGCTCGA-AAGAGCTTCCTGTTTA
1 TGGCTC-ATATGAGCTTCCCGTTAA
*
26460793 TGTGCTCAAATGAGC
1 TG-GCTCATATGAGC
26460808 ATTCTCAAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
23 2 0.04
24 23 0.44
25 27 0.52
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.33
Consensus pattern (24 bp):
TGGCTCATATGAGCTTCCCGTTAA
Found at i:26474721 original size:41 final size:41
Alignment explanation
Indices: 26474676--26474756 Score: 162
Period size: 41 Copynumber: 2.0 Consensus size: 41
26474666 CCGATTTCTT
26474676 TCCCTTAGCATTTGTTTACTCTTTTCACCTCTATTCTACTC
1 TCCCTTAGCATTTGTTTACTCTTTTCACCTCTATTCTACTC
26474717 TCCCTTAGCATTTGTTTACTCTTTTCACCTCTATTCTACT
1 TCCCTTAGCATTTGTTTACTCTTTTCACCTCTATTCTACT
26474757 TACTTTTAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.15, C:0.31, G:0.05, T:0.49
Consensus pattern (41 bp):
TCCCTTAGCATTTGTTTACTCTTTTCACCTCTATTCTACTC
Found at i:26476327 original size:38 final size:38
Alignment explanation
Indices: 26476278--26476388 Score: 160
Period size: 38 Copynumber: 3.0 Consensus size: 38
26476268 AGATGTTTAA
26476278 AAACATTTATTTATTATTTTATGTTTTTAATTTTTATT
1 AAACATTTATTTATTATTTTATGTTTTTAATTTTTATT
26476316 AAACATTTATTTATTATTTTATGTTTTTAATTTTTATT
1 AAACATTTATTTATTATTTTATGTTTTTAATTTTTATT
* *
26476354 AAA-A-CTACTTT-TTATTTTA-CTTTTT-ATTTTTATT
1 AAACATTTA-TTTATTATTTTATGTTTTTAATTTTTATT
26476388 A
1 A
26476389 GATTTTAGAA
Statistics
Matches: 70, Mismatches: 2, Indels: 6
0.90 0.03 0.08
Matches are distributed among these distances:
34 10 0.14
35 5 0.07
36 10 0.14
37 4 0.06
38 41 0.59
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.65
Consensus pattern (38 bp):
AAACATTTATTTATTATTTTATGTTTTTAATTTTTATT
Found at i:26476376 original size:12 final size:12
Alignment explanation
Indices: 26476359--26476383 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26476349 TTATTAAAAC
26476359 TACTTTTTATTT
1 TACTTTTTATTT
26476371 TACTTTTTATTT
1 TACTTTTTATTT
26476383 T
1 T
26476384 TATTAGATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (12 bp):
TACTTTTTATTT
Found at i:26478371 original size:13 final size:13
Alignment explanation
Indices: 26478353--26478378 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26478343 AAATAATCAA
26478353 ACACGGGCGTGTC
1 ACACGGGCGTGTC
26478366 ACACGGGCGTGTC
1 ACACGGGCGTGTC
26478379 CCTACCGAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:26485557 original size:20 final size:18
Alignment explanation
Indices: 26485514--26485548 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26485504 TTCTTGTCAA
* *
26485514 AAAATAATTAATTTTTAT
1 AAAATAATTAAATTTCAT
26485532 AAAATAATTAAATTTCA
1 AAAATAATTAAATTTCA
26485549 CTTAAAATAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (18 bp):
AAAATAATTAAATTTCAT
Found at i:26496447 original size:44 final size:45
Alignment explanation
Indices: 26496380--26496469 Score: 137
Period size: 44 Copynumber: 2.0 Consensus size: 45
26496370 CTCTCCAAAA
*
26496380 CTCTAAGTTCGAGAAATTCATCATACAGGAAGTTTCACTTCTTTC
1 CTCTAAGTTCGAGAAATTCATCATACAGGAAGTTTCACTTCCTTC
* * *
26496425 CTCT-AGTTTGAGGAATTTATCATACAGGAAGTTTCACTTCCTTC
1 CTCTAAGTTCGAGAAATTCATCATACAGGAAGTTTCACTTCCTTC
26496469 C
1 C
26496470 CTATCTTATT
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
44 37 0.90
45 4 0.10
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (45 bp):
CTCTAAGTTCGAGAAATTCATCATACAGGAAGTTTCACTTCCTTC
Found at i:26498133 original size:13 final size:13
Alignment explanation
Indices: 26498115--26498140 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26498105 TGAAGTAATC
26498115 GCACACGGGCGTG
1 GCACACGGGCGTG
26498128 GCACACGGGCGTG
1 GCACACGGGCGTG
26498141 TCCCTGCCGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.46, T:0.08
Consensus pattern (13 bp):
GCACACGGGCGTG
Found at i:26501089 original size:47 final size:46
Alignment explanation
Indices: 26501013--26501379 Score: 192
Period size: 47 Copynumber: 7.8 Consensus size: 46
26501003 TGGGTTATGT
*
26501013 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAC
1 GAGAGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGC-TTGAGAC
* * * *
26501061 GAGGGCTAGTGTAAGA-CATGTCTAGGACATGCATCAGCTAT-ATTAC
1 GAGAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCT-TGA-GAC
* * * * *
26501107 GATAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATAGAAAT
1 GAGAGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGC-TTGAGAC
* * * * * * * *
26501155 GAGTGCCAATGTATGA-CATGTCTGGGACATACATCGGCCTCA-AT
1 GAGAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCTTGAGAC
* ** * *
26501199 GATGGTAGCCAGTGTAAGA-TGTGTCTAGGACATGCATCGGC-TAAG-C
1 GA--G-AGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCTTGAGAC
** * * * * *
26501245 TTCGTGCTAGTGTTAGA-CATGTCTGGGACATGCATCAGCACTTATACAC
1 -GAGAGCTAGTGTAAGACCATGTCTGGGACATGCATC-G-GCTT-GAGAC
* * * * *
26501294 GAAAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCCTCGATGAA
1 GAGAGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGG-CTTGA-GAC
* *
26501343 GATAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GAGAGCTAGTGTAAGACCATGTCTGGGACAT-GCATC
26501380 AGCAACTTAA
Statistics
Matches: 242, Mismatches: 57, Indels: 39
0.72 0.17 0.12
Matches are distributed among these distances:
44 30 0.12
45 5 0.02
46 34 0.14
47 69 0.29
48 47 0.19
49 52 0.21
50 5 0.02
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (46 bp):
GAGAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCTTGAGAC
Found at i:26501142 original size:94 final size:94
Alignment explanation
Indices: 26501020--26501382 Score: 310
Period size: 94 Copynumber: 3.8 Consensus size: 94
26501010 TGTGAGAGCC
* * *
26501020 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGGGCTAGTGTAAGACATGTCTA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGTGCCAGTGTAAGACATGTCTG
*
26501085 GGACATGCATCAGCTATATTACGATAGCT
66 GGACATGCATCAGCTATATCACGATAGCT
* * * * * *
26501114 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATAGAAATGAGTGCCAATGTATGACATGTCTG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGTGCCAGTGTAAGACATGTCTG
* * * * * *
26501179 GGACATACATCGGCCTCA-ATGATGGTAGCC
66 GGACATGCATCAG-CT-ATATCACGATAGCT
** * * ** * *
26501209 AGTGTAAGA-TGTGTCTAGGACAT-GCATCGGC--TAAG-CTTCGTGCTAGTGTTAGACATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAC-GAGTGCCAGTGTAAGACATGTCT
*
26501269 GGGACATGCATCAGC-ACTTATACACGAAAGCT
65 GGGACATGCATCAGCTA--TAT-CACGATAGCT
* * * * *
26501301 AGTGTAAGACCATGTTTGGAACATGGCATCGGCCTCGATGAAGA-TAGCCAGTGTAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA-GACGAGT-GCCAGTGTAAGA-CATGT
26501365 CTGGGACATGGCATCAGC
63 CTGGGACAT-GCATCAGC
26501383 AACTTAACCC
Statistics
Matches: 205, Mismatches: 48, Indels: 27
0.73 0.17 0.10
Matches are distributed among these distances:
88 1 0.00
90 1 0.00
91 32 0.16
92 14 0.07
93 16 0.08
94 86 0.42
95 19 0.09
96 3 0.01
97 11 0.05
98 14 0.07
99 8 0.04
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (94 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGTGCCAGTGTAAGACATGTCTG
GGACATGCATCAGCTATATCACGATAGCT
Found at i:26501325 original size:49 final size:49
Alignment explanation
Indices: 26501250--26501388 Score: 151
Period size: 49 Copynumber: 2.8 Consensus size: 49
26501240 TAAGCTTCGT
*
26501250 GCTAGTGTTAGA-CATGTCTGGGACAT-GCATCAGCACTTAT-ACACGAAA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCACTTATGA-A-GAAA
* * * * *
26501298 GCTAGTGTAAGACCATGTTTGGAACATGGCATCGGC-CTCGATGAAGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCACT-TATGAAGAAA
*
26501347 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCAACTTA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGC-ACTTA
26501389 ACCCATGTTT
Statistics
Matches: 74, Mismatches: 11, Indels: 10
0.78 0.12 0.11
Matches are distributed among these distances:
48 11 0.15
49 49 0.66
50 11 0.15
51 3 0.04
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (49 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCACTTATGAAGAAA
Found at i:26501331 original size:141 final size:142
Alignment explanation
Indices: 26501016--26501382 Score: 376
Period size: 141 Copynumber: 2.6 Consensus size: 142
26501006 GTTATGTGAG
* * * *
26501016 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGG--GCTAGTGTAAGACA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCA-ATGAGGTAGCCAGTGTAAGACA
26501079 TGTCTAGGACATGCATCAGCTATATTACGATAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
64 TGTCTAGGACATGCATCAGCTATATTACGATAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
* *
26501144 AGCATAGAAATGAG
129 AGCATAGAAACGAA
* * * * **
26501158 TGCCAATGTATGA-CATGTCTGGGACAT-ACATCGGCCTCAATGATGGTAGCCAGTGTAAGATGT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATGA-GGTAGCCAGTGTAAGACAT
* *
26501221 GTCTAGGACATGCATCGGCTA-AGCTT-CG-T-GCTAGTGTTAGA-CATGTCTGGGACAT-GCAT
65 GTCTAGGACATGCATCAGCTATA--TTACGATAGCTAGTGTAAGACCATGTCTGGGACATGGCAT
* *
26501280 CAGCACTTATACACGAA
128 CAGCA--TAGAAACGAA
* * * * *
26501297 AGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCCTCGATGAAGATAGCCAGTGTAAGACCA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATG-AGGTAGCCAGTGTAAGA-CA
*
26501362 TGTCTGGGACATGGCATCAGC
64 TGTCTAGGACAT-GCATCAGC
26501383 AACTTAACCC
Statistics
Matches: 184, Mismatches: 29, Indels: 23
0.78 0.12 0.10
Matches are distributed among these distances:
137 9 0.05
138 17 0.09
139 30 0.16
140 21 0.11
141 76 0.41
142 24 0.13
143 7 0.04
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (142 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATGAGGTAGCCAGTGTAAGACATG
TCTAGGACATGCATCAGCTATATTACGATAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAG
CATAGAAACGAA
Found at i:26510481 original size:30 final size:30
Alignment explanation
Indices: 26510445--26510506 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
26510435 AGTTTGCTAC
*
26510445 AACCAG-TAGCGATACCAGAATGGAAATGGG
1 AACCAGTTA-CGATACCAAAATGGAAATGGG
26510475 AACCAGTTACGATACCAAAATGGAAATGGG
1 AACCAGTTACGATACCAAAATGGAAATGGG
26510505 AA
1 AA
26510507 AGAGTTACTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 28 0.93
31 2 0.07
ACGTcount: A:0.44, C:0.16, G:0.26, T:0.15
Consensus pattern (30 bp):
AACCAGTTACGATACCAAAATGGAAATGGG
Found at i:26510513 original size:30 final size:30
Alignment explanation
Indices: 26510454--26510514 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
26510444 CAACCAGTAG
* *
26510454 CGATACCAGAATGGAAATGGGAACCAGTTA
1 CGATACCAAAATGGAAATGGGAAACAGTTA
*
26510484 CGATACCAAAATGGAAATGGGAAAGAGTTA
1 CGATACCAAAATGGAAATGGGAAACAGTTA
26510514 C
1 C
26510515 TATGGACTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.43, C:0.15, G:0.26, T:0.16
Consensus pattern (30 bp):
CGATACCAAAATGGAAATGGGAAACAGTTA
Found at i:26511328 original size:20 final size:20
Alignment explanation
Indices: 26511303--26511343 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
26511293 ATTTTCACAA
26511303 TGTATTTCATGTGTCTATGT
1 TGTATTTCATGTGTCTATGT
26511323 TGTATTTCATGTGTCTATGT
1 TGTATTTCATGTGTCTATGT
26511343 T
1 T
26511344 ACGACGGTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.15, C:0.10, G:0.20, T:0.56
Consensus pattern (20 bp):
TGTATTTCATGTGTCTATGT
Found at i:26512627 original size:25 final size:26
Alignment explanation
Indices: 26512595--26512646 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26512585 TACATGGCAT
26512595 TTTGTGAG-TTTCCTGA-TAAAGGCTC
1 TTTGTGAGCTTTCC-GATTAAAGGCTC
*
26512620 TTTGTGAGCTTTCCGATTAATGGCTC
1 TTTGTGAGCTTTCCGATTAAAGGCTC
26512646 T
1 T
26512647 CCGGAGCTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.17, C:0.17, G:0.23, T:0.42
Consensus pattern (26 bp):
TTTGTGAGCTTTCCGATTAAAGGCTC
Found at i:26512781 original size:26 final size:25
Alignment explanation
Indices: 26512699--26512783 Score: 84
Period size: 25 Copynumber: 3.4 Consensus size: 25
26512689 ATGCTTGTGT
****
26512699 GAGCTTCCCGTTA-ATGGCTCCCTG
1 GAGCTTCCCGTTATATGGCTCGAAA
26512723 GAGCTTCCCGTTATATGGCTCGAAA
1 GAGCTTCCCGTTATATGGCTCGAAA
* *
26512748 GAGCTTCCTGTT-TATGTGCTCGAAT
1 GAGCTTCCCGTTATATG-GCTCGAAA
26512773 GAGCATTCCCG
1 GAGC-TTCCCG
26512784 AATATGAATT
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
24 17 0.33
25 29 0.57
26 5 0.10
ACGTcount: A:0.18, C:0.27, G:0.25, T:0.31
Consensus pattern (25 bp):
GAGCTTCCCGTTATATGGCTCGAAA
Found at i:26515380 original size:40 final size:40
Alignment explanation
Indices: 26515279--26515491 Score: 272
Period size: 40 Copynumber: 5.4 Consensus size: 40
26515269 TGATAACCGA
* * * *
26515279 GCTAAGTCCTGAAGGCATTTGTGCTAGTGACTA-ATTTCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGG
26515319 GCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
** *
26515358 GCTAAGTCTTGAAGGCATTTGTGCGAGTTACTATAACCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
*
26515398 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
* *
26515438 GCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATATCC-G
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGG
* *
26515477 GCTAAATTCCGAAGG
1 GCTAAGTCCCGAAGG
26515492 TACTTGGTTT
Statistics
Matches: 156, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
39 49 0.31
40 107 0.69
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
Found at i:26517989 original size:64 final size:67
Alignment explanation
Indices: 26517879--26518049 Score: 190
Period size: 67 Copynumber: 2.6 Consensus size: 67
26517869 CATCATGTGT
* * * *
26517879 ACAAGAGAGCTACGAGATACTATGTAGTAGCTAGGTTACATGTGTGAT-AC-AG-GATGTATC-C
1 ACAAGAGAGCTACGAGATA--A-AT-GTAGCTAGGTCACATGTGTGATCACAAGTGAAGGA-CAC
26517940 CATGTAG
61 CATGTAG
* * *
26517947 ACAAGAGAGCTACGGGATAAATGTAGCTAGGTCGCATGTGTGATCCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGAGATAAATGTAGCTAGGTCACATGTGTGATCACAAGTGAAGGACACCATGT
26518012 AG
66 AG
*
26518014 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACAT
1 ACAAGAGAGCTACGAGATAAATGTAGCTAGGTCACAT
26518050 AGGTAGTACT
Statistics
Matches: 89, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
64 20 0.22
65 2 0.02
66 16 0.18
67 33 0.37
68 18 0.20
ACGTcount: A:0.34, C:0.16, G:0.27, T:0.22
Consensus pattern (67 bp):
ACAAGAGAGCTACGAGATAAATGTAGCTAGGTCACATGTGTGATCACAAGTGAAGGACACCATGT
AG
Found at i:26524991 original size:13 final size:13
Alignment explanation
Indices: 26524975--26524999 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26524965 TTAATATTAT
26524975 AATATTTCTAATA
1 AATATTTCTAATA
26524988 AATATTTCTAAT
1 AATATTTCTAAT
26525000 TATTTATCCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (13 bp):
AATATTTCTAATA
Found at i:26531970 original size:6 final size:6
Alignment explanation
Indices: 26531960--26531989 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
26531950 AATAGCTAGG
*
26531960 CTGCTG CTGCTT CTGCTT CTGCTT CTGCTT
1 CTGCTT CTGCTT CTGCTT CTGCTT CTGCTT
26531990 TAGCTTTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.33, G:0.20, T:0.47
Consensus pattern (6 bp):
CTGCTT
Found at i:26534408 original size:21 final size:22
Alignment explanation
Indices: 26534365--26534413 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
26534355 AAAATGACAA
*
26534365 CAAAATAACATCAAAATAGTAG
1 CAAAATAACATCAAAATAATAG
*
26534387 CAAAATAACA-CGAAATAATAG
1 CAAAATAACATCAAAATAATAG
26534408 CGAAAA
1 C-AAAA
26534414 AAATTTAGGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 10 0.42
22 14 0.58
ACGTcount: A:0.61, C:0.14, G:0.10, T:0.14
Consensus pattern (22 bp):
CAAAATAACATCAAAATAATAG
Found at i:26558532 original size:13 final size:13
Alignment explanation
Indices: 26558494--26558532 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
26558484 GGAGTAATTG
*
26558494 CACACGGGCGTGC
1 CACACGGGCGTGT
26558507 CACACGGGCGTGT
1 CACACGGGCGTGT
*
26558520 CACAAGGGCGTGT
1 CACACGGGCGTGT
26558533 GCCTGCCGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.18, C:0.31, G:0.38, T:0.13
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:26558886 original size:14 final size:15
Alignment explanation
Indices: 26558867--26558896 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
26558857 ACATTTGACT
26558867 TGTTCTTAATT-TTG
1 TGTTCTTAATTCTTG
26558881 TGTTCTTAATTCTTG
1 TGTTCTTAATTCTTG
26558896 T
1 T
26558897 TTTAATATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.13, C:0.10, G:0.13, T:0.63
Consensus pattern (15 bp):
TGTTCTTAATTCTTG
Found at i:26567548 original size:48 final size:48
Alignment explanation
Indices: 26567474--26567790 Score: 402
Period size: 48 Copynumber: 6.6 Consensus size: 48
26567464 TATGTGTGCT
* * * **
26567474 AGTGTAAGACCATGTTTGGGACATGGCATCGTCCACATTATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGACAATGTTATGAGAGCC
*
26567522 AGTGTAAGACCATGTTTGGAATATGGCATCGACAATGTTATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGACAATGTTATGAGAGCC
*
26567570 AGTGTAAGACCATGTTTGAAACATGGCATC-AGCAATGTTATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGA-CAATGTTATGAGAGCC
* * *
26567618 AGTGTAAGACCATGTTTGGAACATGACATCGATAATGTTTTGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGACAATGTTATGAGAGCC
* *
26567666 AGTGTAAGACCATGTTTGGAACATGGCATTGACAATGTTATGAGAGCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGACAATGTTATGAGAGCC
* * * * * ** * * *
26567714 AGAGTAAGACCATGTCTGGGACATGGCATTGACATTGAGACGAGAACT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGACAATGTTATGAGAGCC
* *
26567762 AGTGTAAGACCATGTCTGGGACATGGCAT
1 AGTGTAAGACCATGTTTGGAACATGGCAT
26567791 TGGTGACATG
Statistics
Matches: 241, Mismatches: 26, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
47 1 0.00
48 239 0.99
49 1 0.00
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (48 bp):
AGTGTAAGACCATGTTTGGAACATGGCATCGACAATGTTATGAGAGCC
Found at i:26568056 original size:13 final size:13
Alignment explanation
Indices: 26568038--26568066 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
26568028 GGTTGTTTAT
26568038 TAAACTAATTAAC
1 TAAACTAATTAAC
26568051 TAAACTAATTAAC
1 TAAACTAATTAAC
26568064 TAA
1 TAA
26568067 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:26570707 original size:35 final size:35
Alignment explanation
Indices: 26570644--26570711 Score: 102
Period size: 35 Copynumber: 1.9 Consensus size: 35
26570634 ACTCATAAGA
*
26570644 GGGAAAGAGGTGAAACTCCCTAGTTTATGGATGCG
1 GGGAAAGAGGTGAAACTCCCTAGCTTATGGATGCG
*
26570679 GGGAAAGAGGTGAAACTCTCT-GACTTATGGATG
1 GGGAAAGAGGTGAAACTCCCTAG-CTTATGGATG
26570712 TGGAGCTTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 1 0.03
35 29 0.97
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (35 bp):
GGGAAAGAGGTGAAACTCCCTAGCTTATGGATGCG
Found at i:26571007 original size:6 final size:6
Alignment explanation
Indices: 26570998--26571043 Score: 58
Period size: 6 Copynumber: 7.8 Consensus size: 6
26570988 TTCAAAAGAA
** *
26570998 AAAAAT -AAAAT TGAAAT GAAAAT AAAAAT AAAAAT AAAAAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
26571044 GATAGGAGGA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
5 5 0.14
6 30 0.86
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.17
Consensus pattern (6 bp):
AAAAAT
Found at i:26573268 original size:35 final size:35
Alignment explanation
Indices: 26573221--26573292 Score: 126
Period size: 35 Copynumber: 2.1 Consensus size: 35
26573211 GTCTCTTTCC
26573221 CTACTTGACAACGGCTATAGGCATGCCCGTGTGTG
1 CTACTTGACAACGGCTATAGGCATGCCCGTGTGTG
* *
26573256 CTACTTGGCAACGGCTTTAGGCATGCCCGTGTGTG
1 CTACTTGACAACGGCTATAGGCATGCCCGTGTGTG
26573291 CT
1 CT
26573293 GAAAAACTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.17, C:0.26, G:0.29, T:0.28
Consensus pattern (35 bp):
CTACTTGACAACGGCTATAGGCATGCCCGTGTGTG
Found at i:26576450 original size:13 final size:13
Alignment explanation
Indices: 26576432--26576456 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26576422 GGTTGTTTAT
26576432 TAAACTAATTAAG
1 TAAACTAATTAAG
26576445 TAAACTAATTAA
1 TAAACTAATTAA
26576457 CTAATTAAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.04, T:0.32
Consensus pattern (13 bp):
TAAACTAATTAAG
Found at i:26579936 original size:44 final size:44
Alignment explanation
Indices: 26579881--26579965 Score: 161
Period size: 44 Copynumber: 1.9 Consensus size: 44
26579871 GAACTATGTG
26579881 ATCTGAACTCATGAGTTGTGGTCTAAGTTCATGATATATGTGAC
1 ATCTGAACTCATGAGTTGTGGTCTAAGTTCATGATATATGTGAC
*
26579925 ATCTGAACTCATGAGTTGTGGTCTCAGTTCATGATATATGT
1 ATCTGAACTCATGAGTTGTGGTCTAAGTTCATGATATATGT
26579966 TACACATGTT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.26, C:0.14, G:0.22, T:0.38
Consensus pattern (44 bp):
ATCTGAACTCATGAGTTGTGGTCTAAGTTCATGATATATGTGAC
Found at i:26585900 original size:17 final size:17
Alignment explanation
Indices: 26585878--26585911 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
26585868 AAGGATATTC
26585878 TATGAGGGTAACACATT
1 TATGAGGGTAACACATT
26585895 TATGAGGGTAACACATT
1 TATGAGGGTAACACATT
26585912 GATCAACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.29
Consensus pattern (17 bp):
TATGAGGGTAACACATT
Found at i:26590619 original size:17 final size:17
Alignment explanation
Indices: 26590597--26590630 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
26590587 CACTAACATG
*
26590597 AAAATGTAATGACAATA
1 AAAATGCAATGACAATA
26590614 AAAATGCAATGACAATA
1 AAAATGCAATGACAATA
26590631 TATTCTTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (17 bp):
AAAATGCAATGACAATA
Found at i:26597269 original size:43 final size:43
Alignment explanation
Indices: 26597189--26597334 Score: 215
Period size: 43 Copynumber: 3.4 Consensus size: 43
26597179 GATAAATCTT
* * * *
26597189 GCAGGCCTAGTGCTGGT-AT-TATATTTGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
26597230 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
26597273 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
26597316 GCAGGCGTAATGCCGGTGA
1 GCAGGCTTAGTGCCGGTGA
26597335 AATGATATGT
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
41 15 0.16
42 2 0.02
43 78 0.82
ACGTcount: A:0.13, C:0.23, G:0.34, T:0.29
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:26602943 original size:27 final size:27
Alignment explanation
Indices: 26602911--26603098 Score: 214
Period size: 27 Copynumber: 7.0 Consensus size: 27
26602901 AAGACCCCAG
* *
26602911 TTTGTAAAATTATCGAAATACCCCCGA
1 TTTGTAAAATTACCGAAATACCCCTGA
* *
26602938 TGTGTAAAATTACTGAAATACCCCTGA
1 TTTGTAAAATTACCGAAATACCCCTGA
** * **
26602965 CATGTGAAATTAATGAAATACCCCTGA
1 TTTGTAAAATTACCGAAATACCCCTGA
* * *
26602992 TTTTTAAAATTACCAAAATACCCTTGA
1 TTTGTAAAATTACCGAAATACCCCTGA
* ** *
26603019 TTTGCAAAATTATTGAAATACCCCCGA
1 TTTGTAAAATTACCGAAATACCCCTGA
*
26603046 TTTGTAAAATTACCAAAATACCCCTGA
1 TTTGTAAAATTACCGAAATACCCCTGA
*
26603073 TTTGTAAAATTACCGAAATAACCCTG
1 TTTGTAAAATTACCGAAATACCCCTG
26603099 TAATATCCCA
Statistics
Matches: 131, Mismatches: 30, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 131 1.00
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (27 bp):
TTTGTAAAATTACCGAAATACCCCTGA
Found at i:26603091 original size:54 final size:54
Alignment explanation
Indices: 26602911--26603092 Score: 240
Period size: 54 Copynumber: 3.4 Consensus size: 54
26602901 AAGACCCCAG
* **
26602911 TTTGTAAAATTATCGAAATACCCCCGATGTGTAAAATTACTGAAATACCCCTGA
1 TTTGTAAAATTATCGAAATACCCCCGATTTGTAAAATTACCAAAATACCCCTGA
** * * * *
26602965 CATGTGAAATTAAT-GAAATACCCCTGATTTTTAAAATTACCAAAATACCCTTGA
1 TTTGTAAAATT-ATCGAAATACCCCCGATTTGTAAAATTACCAAAATACCCCTGA
* *
26603019 TTTGCAAAATTATTGAAATACCCCCGATTTGTAAAATTACCAAAATACCCCTGA
1 TTTGTAAAATTATCGAAATACCCCCGATTTGTAAAATTACCAAAATACCCCTGA
*
26603073 TTTGTAAAATTACCGAAATA
1 TTTGTAAAATTATCGAAATA
26603093 ACCCTGTAAT
Statistics
Matches: 107, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
53 2 0.02
54 103 0.96
55 2 0.02
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (54 bp):
TTTGTAAAATTATCGAAATACCCCCGATTTGTAAAATTACCAAAATACCCCTGA
Found at i:26605810 original size:46 final size:46
Alignment explanation
Indices: 26605743--26605866 Score: 203
Period size: 46 Copynumber: 2.7 Consensus size: 46
26605733 GCTTTTTGAA
* *
26605743 ATGAAATGTGTAAAACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
26605789 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
26605835 ATGAAATGAGTAAGACCATGGTTGAAACATAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATAC
26605867 AATGAATAAG
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.23
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:26605870 original size:28 final size:28
Alignment explanation
Indices: 26605839--26605894 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
26605829 CGTGACATGA
*
26605839 AATGAGTAAGACCATGGTTGAAACATAC
1 AATGAATAAGACCATGGTTGAAACATAC
*
26605867 AATGAATAAGACCATGGTTGAAAGATAC
1 AATGAATAAGACCATGGTTGAAACATAC
26605895 CATGGCACCG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.45, C:0.12, G:0.21, T:0.21
Consensus pattern (28 bp):
AATGAATAAGACCATGGTTGAAACATAC
Found at i:26605882 original size:74 final size:74
Alignment explanation
Indices: 26605799--26605940 Score: 257
Period size: 74 Copynumber: 1.9 Consensus size: 74
26605789 ATGAAATGTG
*
26605799 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAATGAGTAAGACCATGGTTGAAACA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAATGAATAAGACCATGGTTGAAACA
26605864 TACAATGAA
66 TACAATGAA
* *
26605873 TAAGACCATGGTTGAAAGATACCATGGCACCGTGACATGAAATGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAATGAATAAGACCATGGTTGAAACA
26605938 TAC
66 TAC
26605941 CATGGCAACA
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
74 65 1.00
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.20
Consensus pattern (74 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAATGAATAAGACCATGGTTGAAACA
TACAATGAA
Found at i:26605933 original size:120 final size:121
Alignment explanation
Indices: 26605757--26605987 Score: 365
Period size: 120 Copynumber: 1.9 Consensus size: 121
26605747 AATGTGTAAA
* **
26605757 ACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACC
1 ACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGATACC
* * *
26605822 ATGGCAACGTGACA-TGAAATGAGTAAGACCATGGTTGAAACATACAATGAATAAG
66 ATGGCAACATGACAGGGAAATGAATAAGACCATGGTTGAAACATACAATGAATAAG
* *
26605877 ACCATGGTTGAAAGATACCATGGCACCGTGACATGAAATGAATAAGACCATGGTTGAAAGATACC
1 ACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGATACC
* *
26605942 ATGGCAACATGACAGGGAAATGAATAAGTCCATGGTTGAAAGATAC
66 ATGGCAACATGACAGGGAAATGAATAAGACCATGGTTGAAACATAC
26605988 CATGGCAACA
Statistics
Matches: 100, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
120 73 0.73
121 27 0.27
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (121 bp):
ACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGATACC
ATGGCAACATGACAGGGAAATGAATAAGACCATGGTTGAAACATACAATGAATAAG
Found at i:26605975 original size:93 final size:93
Alignment explanation
Indices: 26605867--26606045 Score: 261
Period size: 93 Copynumber: 1.9 Consensus size: 93
26605857 TGAAACATAC
* * * * *
26605867 AATGAATAAGACCATGGTTGAAAGATACCATGGCACCGTGACATG-AAATGAATAAGACCATGGT
1 AATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAACGAACAAGACCATAGT
26605931 TGAAAGATACCATGGCAACATGACAGGGA
65 TGAAAGATACCATGGCAACATGACAGGGA
* *
26605960 AATGAATAAGTCCATGGTTGAAAGATACCATGGCAACATGACAGAAAACGAGCAAGACCATAGTT
1 AATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAACGAACAAGACCATAGTT
* *
26606025 GAAAGATACTATGGCATCATG
66 GAAAGATACCATGGCAACATG
26606046 TCGAAGATAA
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
92 1 0.01
93 75 0.99
ACGTcount: A:0.41, C:0.16, G:0.23, T:0.19
Consensus pattern (93 bp):
AATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAACGAACAAGACCATAGTT
GAAAGATACCATGGCAACATGACAGGGA
Found at i:26605980 original size:47 final size:46
Alignment explanation
Indices: 26605867--26606045 Score: 250
Period size: 46 Copynumber: 3.9 Consensus size: 46
26605857 TGAAACATAC
* * *
26605867 AATGAATAAGACCATGGTTGAAAGATACCATGGCACCGTGACATGA
1 AATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGA
26605913 AATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGGA
1 AATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GGA
* *
26605960 AATGAATAAGTCCATGGTTGAAAGATACCATGGCAACATGACAGAA
1 AATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGA
* ** * * *
26606006 AACGAGCAAGACCATAGTTGAAAGATACTATGGCATCATG
1 AATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
26606046 TCGAAGATAA
Statistics
Matches: 120, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
46 76 0.63
47 44 0.37
ACGTcount: A:0.41, C:0.16, G:0.23, T:0.19
Consensus pattern (46 bp):
AATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGA
Found at i:26606940 original size:27 final size:27
Alignment explanation
Indices: 26606892--26606967 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
26606882 GACTTGTGAA
* * *
26606892 ATTATTGAAATACCTCTATAGGACAAG
1 ATTACTGAAATACCCCTGTAGGACAAG
** *
26606919 ATTACTGAAATACCCCTGTAGGGTAGG
1 ATTACTGAAATACCCCTGTAGGACAAG
* *
26606946 ATTACCGAAATACCCTTGTAGG
1 ATTACTGAAATACCCCTGTAGG
26606968 GTAAAATGAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (27 bp):
ATTACTGAAATACCCCTGTAGGACAAG
Found at i:26606968 original size:27 final size:27
Alignment explanation
Indices: 26606918--26606970 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
26606908 TATAGGACAA
*
26606918 GATTACTGAAATACCCCTGTAGGGTAG
1 GATTACCGAAATACCCCTGTAGGGTAG
*
26606945 GATTACCGAAATACCCTTGTAGGGTA
1 GATTACCGAAATACCCCTGTAGGGTA
26606971 AAATGACCGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (27 bp):
GATTACCGAAATACCCCTGTAGGGTAG
Found at i:26606979 original size:27 final size:27
Alignment explanation
Indices: 26606925--26606979 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
26606915 CAAGATTACT
** *
26606925 GAAATACCCCTGTAGGGTAGGATTACC
1 GAAATACCCCTGTAGGGTAAAATGACC
*
26606952 GAAATACCCTTGTAGGGTAAAATGACC
1 GAAATACCCCTGTAGGGTAAAATGACC
26606979 G
1 G
26606980 TTTTTCCCTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAAAATGACC
Found at i:26607023 original size:26 final size:26
Alignment explanation
Indices: 26606958--26607030 Score: 76
Period size: 26 Copynumber: 2.8 Consensus size: 26
26606948 TACCGAAATA
* *
26606958 CCCTTGTAGGGTAAAATGACCGTTTTT
1 CCCTTGT-GGGTAAAATGACTGTTTTG
*** *
26606985 CCCTAAAGAGTAAAATGACTGTTTTG
1 CCCTTGTGGGTAAAATGACTGTTTTG
26607011 CCCTTGTGGGT-AAATGACTG
1 CCCTTGTGGGTAAAATGACTG
26607031 ACTAGGGCTA
Statistics
Matches: 36, Mismatches: 10, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
25 9 0.25
26 23 0.64
27 4 0.11
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (26 bp):
CCCTTGTGGGTAAAATGACTGTTTTG
Found at i:26608664 original size:44 final size:44
Alignment explanation
Indices: 26608512--26608669 Score: 152
Period size: 43 Copynumber: 3.6 Consensus size: 44
26608502 AGTAAATACA
* * *
26608512 ATGCCAACGTCCTAGACGTGGTCTTACATGT-AATCGA-ACATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAAACGATA-ATCG
26608555 ATGCC-ACTGTCCCAGACAG-GGTCTTACAC--AAAATCGATTAA-CG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAAAA-CGA-TAATCG
* *
26608598 ATGCCAATGTCCCAGACATGGTCTTACACGTAAAAC-ATAAGTCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAAACGATAA-TCG
*
26608642 ATGCCAACGTCCTAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
26608670 GGATAACACA
Statistics
Matches: 95, Mismatches: 8, Indels: 23
0.75 0.06 0.18
Matches are distributed among these distances:
42 7 0.07
43 52 0.55
44 31 0.33
45 5 0.05
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAAAACGATAATCG
Found at i:26615494 original size:46 final size:47
Alignment explanation
Indices: 26615295--26615563 Score: 205
Period size: 47 Copynumber: 5.7 Consensus size: 47
26615285 ATTTGTTTGT
* * * * **
26615295 GAGCTAGTGTAAGA-CATTTCTAGGACATGCATCGGCCACATTATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCTACAAGATGA
** * ** *
26615341 GAGCCAGTGTAAGACCATGTCTGGGACATGACATAAG-AATTGAGACGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATG-CATCGGCTA-CAAGATGA
* * *
26615389 GAGCTAGTGTAAGA-CATGTATGGGACATGCATCGGCCTTGAGAAG-T-A
1 GAGCCAGTGTAAGACCATGTCTGGGACATGCATCGG-C-T-ACAAGATGA
*
26615436 -AGCCAGTATAAGA-CATGTCTGGGACATGCATCGGCTACAAGATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCTACAAGATGA
* * * **
26615481 TAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGACT-TGAGAT-A
1 GAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCTACAAGATGA
*
26615527 TGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCG
1 -GAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCG
26615564 ACACCTTACC
Statistics
Matches: 179, Mismatches: 31, Indels: 25
0.76 0.13 0.11
Matches are distributed among these distances:
43 4 0.02
44 2 0.01
45 2 0.01
46 60 0.34
47 80 0.45
48 28 0.16
49 2 0.01
50 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.28, T:0.23
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCTACAAGATGA
Found at i:26615509 original size:93 final size:94
Alignment explanation
Indices: 26615394--26615563 Score: 240
Period size: 93 Copynumber: 1.8 Consensus size: 94
26615384 GACGAGAGCT
*
26615394 AGTGTAAGACATGTATGGGACAT-GCATCGGCCTTGAGA-AGTAAGCCAGTATAAGA-CATGTCT
1 AGTGTAAGACATGTATGGGACATGGCATC-GACTTGAGATA-TAAGCCAGTATAAGACCATGTCT
*
26615456 GGGACAT-GCATCGGCTACAAGATGATAGTC
64 AGGACATGGCATCGGCTACAAGATGATAGTC
* * *
26615486 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATATGAGCCAGTGTAAGACCATGTCTA
1 AGTGTAAGA-CATGTATGGGACATGGCATCGACTTGAGATATAAGCCAGTATAAGACCATGTCTA
26615551 GGACATGGCATCG
65 GGACATGGCATCG
26615564 ACACCTTACC
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
92 9 0.13
93 34 0.50
94 19 0.28
95 6 0.09
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (94 bp):
AGTGTAAGACATGTATGGGACATGGCATCGACTTGAGATATAAGCCAGTATAAGACCATGTCTAG
GACATGGCATCGGCTACAAGATGATAGTC
Found at i:26615536 original size:47 final size:47
Alignment explanation
Indices: 26615341--26615565 Score: 221
Period size: 47 Copynumber: 4.8 Consensus size: 47
26615331 CACATTATGA
* * * *
26615341 GAGCCAGTGTAAGACCATGTCTGGGACATGACATAAGAATTGAGACGA-
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCAT-CGACTTGAGA-TAT
* * *
26615389 GAGCTAGTGTAAGA-CATGTATGGGACAT-GCATCGGCCTTGAGA-AGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGAGATA-T
* * * **
26615435 AAGCCAGTATAAGA-CATGTCTGGGACAT-GCATCGGCTACAAGATGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACT-TGAGAT-AT
*
26615482 -AGTCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATAT
*
26615528 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGAC
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC
26615566 ACCTTACCCA
Statistics
Matches: 148, Mismatches: 20, Indels: 19
0.79 0.11 0.10
Matches are distributed among these distances:
44 1 0.01
45 3 0.02
46 55 0.37
47 67 0.45
48 22 0.15
ACGTcount: A:0.31, C:0.18, G:0.29, T:0.22
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATAT
Found at i:26615556 original size:140 final size:141
Alignment explanation
Indices: 26615304--26615563 Score: 355
Period size: 140 Copynumber: 1.9 Consensus size: 141
26615294 TGAGCTAGTG
* **
26615304 TAAGACATTTCTAGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGGGACA
1 TAAGACATGTCTAGGACATGCATCGGCCACAAGATGAGAGCCAGTGTAAGACCATGTCTGGGACA
* *
26615369 TGACATAAGAATTGAGACGAGAGCTAGTGTAAGACATGTATGGGACAT-GCATCGGCCTTGAGAA
66 TGACATAAGAATTGAGACGAGAGCCAGTGTAAGACATGTATAGGACATGGCATCGGCCTTGAGAA
26615433 GTAAGCCAGTA
131 GTAAGCCAGTA
* * * *
26615444 TAAGACATGTCTGGGACATGCATCGGCTACAAGATGATAGTCAGTGTAAGACCATGTCTGGGACA
1 TAAGACATGTCTAGGACATGCATCGGCCACAAGATGAGAGCCAGTGTAAGACCATGTCTGGGACA
* * * * *
26615509 TGGCAT-CGACTTGAGA-TATGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCG
66 TGACATAAGAATTGAGACGA-GAGCCAGTGTAAGA-CATGTATAGGACATGGCATCG
26615564 ACACCTTACC
Statistics
Matches: 103, Mismatches: 14, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
138 1 0.01
139 21 0.20
140 75 0.73
141 6 0.06
ACGTcount: A:0.31, C:0.18, G:0.28, T:0.23
Consensus pattern (141 bp):
TAAGACATGTCTAGGACATGCATCGGCCACAAGATGAGAGCCAGTGTAAGACCATGTCTGGGACA
TGACATAAGAATTGAGACGAGAGCCAGTGTAAGACATGTATAGGACATGGCATCGGCCTTGAGAA
GTAAGCCAGTA
Found at i:26632668 original size:47 final size:49
Alignment explanation
Indices: 26632603--26632733 Score: 146
Period size: 47 Copynumber: 2.8 Consensus size: 49
26632593 ACATTATGAG
* *
26632603 AGCCAGTGAAAGACCATGTCTTGGACATGGCATCGACCT-CGAGACG-T
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCTACGAGACGAT
* * * *
26632650 AAGCCAGTGTATGA-CATGTCTGGGACAT-CCATCGA-CTACTAGATGAT
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCTACGAGACGAT
**
26632697 AGTTAGTGTAAGACCATGTCTGGGACATGGCATCGAC
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC
26632734 ACCTTACCCA
Statistics
Matches: 68, Mismatches: 10, Indels: 9
0.78 0.11 0.10
Matches are distributed among these distances:
45 2 0.03
46 21 0.31
47 28 0.41
48 17 0.25
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (49 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCTACGAGACGAT
Found at i:26648812 original size:39 final size:40
Alignment explanation
Indices: 26648695--26648955 Score: 334
Period size: 40 Copynumber: 6.6 Consensus size: 40
26648685 GCTACTCGTT
*
26648695 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
26648735 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
26648775 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
26648814 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
26648854 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
26648893 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
26648934 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
26648956 AGACATCATT
Statistics
Matches: 192, Mismatches: 23, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
38 2 0.01
39 67 0.35
40 110 0.57
41 13 0.07
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:26648912 original size:119 final size:120
Alignment explanation
Indices: 26648695--26648951 Score: 337
Period size: 119 Copynumber: 2.2 Consensus size: 120
26648685 GCTACTCGTT
* *
26648695 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* * *
26648760 ATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGGA-ATTAGT-A-TCTCGCA
66 AATTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGATA-TAGTCACT-TAGCA
* *
26648814 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTCGGGACTTAACCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* * * *
26648877 GAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCA
65 GAATTAGTAACTCGCACAAATGCCTTCGG-GCTTAGCCCGGATATAGTCACTTAGCA
26648934 CAAA-GCCTTCGGGACTTA
1 CAAATGCCTTCGGGACTTA
26648952 GCCCAGACAT
Statistics
Matches: 122, Mismatches: 11, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
118 34 0.28
119 75 0.61
120 12 0.10
121 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACTTAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
AATTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGATATAGTCACTTAGCA
Found at i:26648918 original size:79 final size:80
Alignment explanation
Indices: 26648697--26648955 Score: 366
Period size: 79 Copynumber: 3.3 Consensus size: 80
26648687 TACTCGTTCA
* * *
26648697 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGGA
26648761 TTTAGTAACTCGCACC
65 TTTAGTAACTCGCACC
26648777 AATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGGAT
26648841 TTAGTAACTCGCACC
66 TTAGTAACTCGCACC
**
26648856 AATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
* * * *
26648919 TATGGTCACTTAGCA-C
65 TTTAGTAAC-TCGCACC
*
26648935 AAAGCCTTCGGGACTTAGCCC
1 AATGCCTTCGGGACTTAGCCC
26648956 AGACATCATT
Statistics
Matches: 165, Mismatches: 10, Indels: 8
0.90 0.05 0.04
Matches are distributed among these distances:
78 3 0.02
79 137 0.83
80 25 0.15
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGGAT
TTAGTAACTCGCACC
Found at i:26663233 original size:79 final size:80
Alignment explanation
Indices: 26663135--26663317 Score: 212
Period size: 79 Copynumber: 2.3 Consensus size: 80
26663125 TACTAGTTGA
* *
26663135 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
26663198 ATTTAGTAAC-TCGCACC
64 ATATAGTAACTTAGCA-C
* * **
26663215 AATGCCTTCGGG-CTTAGCCCAGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
* *
26663279 ATGGTCACTTAGCAC
66 ATAGTAACTTAGCAC
*
26663294 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
26663318 CATCATTCGA
Statistics
Matches: 87, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
78 3 0.03
79 57 0.66
80 27 0.31
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:26663317 original size:40 final size:40
Alignment explanation
Indices: 26663134--26663317 Score: 214
Period size: 40 Copynumber: 4.6 Consensus size: 40
26663124 CTACTAGTTG
* *
26663134 AAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCAC
* *
26663174 AAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCAC
* * *
26663214 CAATGCCTTCGGG-CTTAGCCCAGA-ATTAGTATCTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCAC
* * * *
26663253 AAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC
1 AAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCAC
26663294 AAA-GCCTTCGGGACTTAGCCCGGA
1 AAATGCCTTCGGGACTTAGCCCGGA
26663318 CATCATTCGA
Statistics
Matches: 121, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 77 0.64
41 12 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCAC
Found at i:26677666 original size:29 final size:27
Alignment explanation
Indices: 26677626--26677726 Score: 80
Period size: 29 Copynumber: 3.4 Consensus size: 27
26677616 TCAGACCTGT
26677626 CCAAAAATAAATCAATAAGTTAGAGGA
1 CCAAAAATAAATCAATAAGTTAGAGGA
* *
26677653 CCAAAGAACTAAATTC-A-AAGCTCTCAGACCTGT
1 CCAAA-AA-TAAA-TCAATAAG-T-T-AGA--GGA
26677686 CCAAAAATAAATCAATAAGTTAGAGGA
1 CCAAAAATAAATCAATAAGTTAGAGGA
26677713 CCAAAGAATTAAAT
1 CCAAA-AA-TAAAT
26677727 TTTACCAACT
Statistics
Matches: 58, Mismatches: 4, Indels: 22
0.69 0.05 0.26
Matches are distributed among these distances:
27 11 0.19
28 7 0.12
29 14 0.24
30 6 0.10
31 9 0.16
32 5 0.09
33 6 0.10
ACGTcount: A:0.50, C:0.17, G:0.13, T:0.20
Consensus pattern (27 bp):
CCAAAAATAAATCAATAAGTTAGAGGA
Found at i:26677702 original size:60 final size:59
Alignment explanation
Indices: 26677604--26677727 Score: 230
Period size: 60 Copynumber: 2.1 Consensus size: 59
26677594 TTTTGTAATC
26677604 AAATTAAAGCTCTCAGACCTGTCCAAAAATAAATCAATAAGTTAGAGGACCAAAGAACT
1 AAATTAAAGCTCTCAGACCTGTCCAAAAATAAATCAATAAGTTAGAGGACCAAAGAACT
*
26677663 AAATTCAAAGCTCTCAGACCTGTCCAAAAATAAATCAATAAGTTAGAGGACCAAAGAATT
1 AAATT-AAAGCTCTCAGACCTGTCCAAAAATAAATCAATAAGTTAGAGGACCAAAGAACT
26677723 AAATT
1 AAATT
26677728 TTACCAACTT
Statistics
Matches: 63, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
59 5 0.08
60 58 0.92
ACGTcount: A:0.48, C:0.18, G:0.13, T:0.22
Consensus pattern (59 bp):
AAATTAAAGCTCTCAGACCTGTCCAAAAATAAATCAATAAGTTAGAGGACCAAAGAACT
Found at i:26684735 original size:6 final size:6
Alignment explanation
Indices: 26684718--26684805 Score: 97
Period size: 6 Copynumber: 14.7 Consensus size: 6
26684708 CAAAATAGAC
* * * *
26684718 ATAAAA AGAAAA ATAAAA CTCAAA ATAAAA AT-AAA ATATAAG ATAAAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATA-AAA ATAAAA
* * *
26684766 ATAAAA ATAAAC ATAAAC ATAAAT ATAAAA ATAAAA ATAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAA
26684806 TTGGACTCAA
Statistics
Matches: 69, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
5 5 0.07
6 59 0.86
7 5 0.07
ACGTcount: A:0.75, C:0.05, G:0.02, T:0.18
Consensus pattern (6 bp):
ATAAAA
Found at i:26686517 original size:23 final size:22
Alignment explanation
Indices: 26686480--26686522 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
26686470 ATTAAAATAA
26686480 AATAATAAAGAAATAATAAGAGT
1 AATAATAAAGAAATAA-AAGAGT
26686503 AATAATAAATG-AATAAAAGA
1 AATAATAAA-GAAATAAAAGA
26686523 AAAGGGAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 4 0.21
23 14 0.74
24 1 0.05
ACGTcount: A:0.67, C:0.00, G:0.12, T:0.21
Consensus pattern (22 bp):
AATAATAAAGAAATAAAAGAGT
Found at i:26686836 original size:15 final size:15
Alignment explanation
Indices: 26686818--26686851 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
26686808 AAGATGGGAG
26686818 AGAAGAGAAAAGAAA
1 AGAAGAGAAAAGAAA
*
26686833 AGAAGAGAAAAGAGA
1 AGAAGAGAAAAGAAA
26686848 AGAA
1 AGAA
26686852 AAGAGAGGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (15 bp):
AGAAGAGAAAAGAAA
Found at i:26687360 original size:86 final size:86
Alignment explanation
Indices: 26687215--26687388 Score: 233
Period size: 86 Copynumber: 2.0 Consensus size: 86
26687205 ATGTGTCTGA
* * *
26687215 ACACATGGTCATGTGCTTCGCCCGTGGAGCTCTCTGACTTGTTTAAAATTTGAAAATTTAACTTC
1 ACACATGGCCATGTGCCTCGCCCGTGGAGCTCTCTGACTTGTTTAAAATTAGAAAATTTAACTTC
* *
26687280 AATTTTCACACGGCCTTGGAC
66 AATTTTCACACGACCTAGGAC
* * * * *
26687301 ACACATGGCCATGTGCCTCGGCCGTGGAGCTCTTTTACTTGTTTAAAAGTTAG-GAATTTAGCTT
1 ACACATGGCCATGTGCCTCGCCCGTGGAGCTCTCTGACTTGTTTAAAA-TTAGAAAATTTAACTT
*
26687365 CAGTTTTCACACGACCTAGGAC
65 CAATTTTCACACGACCTAGGAC
26687387 AC
1 AC
26687389 GTCTGTGTGT
Statistics
Matches: 76, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
86 73 0.96
87 3 0.04
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (86 bp):
ACACATGGCCATGTGCCTCGCCCGTGGAGCTCTCTGACTTGTTTAAAATTAGAAAATTTAACTTC
AATTTTCACACGACCTAGGAC
Found at i:26689065 original size:29 final size:29
Alignment explanation
Indices: 26689023--26689080 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
26689013 ATACACGAAA
26689023 AAGAAAATGATCCTCCCAAAAATAATTTT
1 AAGAAAATGATCCTCCCAAAAATAATTTT
26689052 AAGAAAATGATCCTCCCAAAAATAATTTT
1 AAGAAAATGATCCTCCCAAAAATAATTTT
26689081 TCACATTGGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.48, C:0.17, G:0.07, T:0.28
Consensus pattern (29 bp):
AAGAAAATGATCCTCCCAAAAATAATTTT
Found at i:26693251 original size:20 final size:20
Alignment explanation
Indices: 26693226--26693292 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
26693216 ATTTTGATAT
*
26693226 ACATGAT-TGATATGACATGC
1 ACATGATATG-TATGATATGC
26693246 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
26693266 ACATGTTATGTATGATATGC
1 ACATGATATGTATGATATGC
26693286 ACATGAT
1 ACATGAT
26693293 GTATTCATAA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:26693405 original size:26 final size:27
Alignment explanation
Indices: 26693340--26693415 Score: 109
Period size: 27 Copynumber: 2.9 Consensus size: 27
26693330 TGGAGGAAGT
* * * *
26693340 GAAAAAGCGCTTATGCCCTAGGTTACT
1 GAAAAAGGGCTTATGCCCCAGTTTACC
26693367 GAAAAAGGGCTTATGCCCCAGTTTACC
1 GAAAAAGGGCTTATGCCCCAGTTTACC
26693394 G-AAAAGGGCTTATGCCCCAGTT
1 GAAAAAGGGCTTATGCCCCAGTT
26693416 ATTAAAAAGA
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
26 21 0.47
27 24 0.53
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.24
Consensus pattern (27 bp):
GAAAAAGGGCTTATGCCCCAGTTTACC
Found at i:26693671 original size:7 final size:7
Alignment explanation
Indices: 26693659--26693688 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
26693649 TCGGCCCAGT
26693659 AATATGA
1 AATATGA
26693666 AATATGA
1 AATATGA
26693673 AATATGA
1 AATATGA
26693680 AATATGA
1 AATATGA
26693687 AA
1 AA
26693689 AGGCTTCGGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.60, C:0.00, G:0.13, T:0.27
Consensus pattern (7 bp):
AATATGA
Found at i:26701334 original size:20 final size:20
Alignment explanation
Indices: 26701309--26701375 Score: 91
Period size: 20 Copynumber: 3.4 Consensus size: 20
26701299 ATTTTGATAT
*
26701309 ACATGAT-TGATATGACATGC
1 ACATGATATG-TATGATATGC
26701329 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
26701349 ACATGTTATGTATGATATGA
1 ACATGATATGTATGATATGC
26701369 ACATGAT
1 ACATGAT
26701376 GTATTCATAA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
20 40 0.95
21 2 0.05
ACGTcount: A:0.36, C:0.10, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:26701477 original size:26 final size:27
Alignment explanation
Indices: 26701421--26701494 Score: 125
Period size: 26 Copynumber: 2.8 Consensus size: 27
26701411 GATGAAGTGC
*
26701421 AAAAA-GGCTTATGCCCTAGTTTACCG
1 AAAAAGGGCTTATGCCCCAGTTTACCG
26701447 AAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAAGGGCTTATGCCCCAGTTTACCG
26701474 -AAAAGGGCTTATGCCCCAGTT
1 AAAAAGGGCTTATGCCCCAGTT
26701495 ATTAAAAAAA
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 26 0.57
27 20 0.43
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (27 bp):
AAAAAGGGCTTATGCCCCAGTTTACCG
Found at i:26701503 original size:26 final size:26
Alignment explanation
Indices: 26701421--26701503 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 26
26701411 GATGAAGTGC
* ***
26701421 AAAAA-GGCTTATGCCCTAGTTTACCG
1 AAAAAGGGCTTATGCCCCAG-TTATTA
26701447 AAAAAGGGCTTATGCCCCAG-T-TTA
1 AAAAAGGGCTTATGCCCCAGTTATTA
*
26701471 CCGAAAAGGGCTTATGCCCCAGTTATTA
1 --AAAAAGGGCTTATGCCCCAGTTATTA
26701499 AAAAA
1 AAAAA
26701504 AGGCAAGGCC
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
25 1 0.02
26 28 0.61
27 14 0.30
28 3 0.07
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.24
Consensus pattern (26 bp):
AAAAAGGGCTTATGCCCCAGTTATTA
Found at i:26701750 original size:7 final size:7
Alignment explanation
Indices: 26701738--26701767 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
26701728 TCGACCCAGT
26701738 AATATGA
1 AATATGA
26701745 AATATGA
1 AATATGA
26701752 AATATGA
1 AATATGA
26701759 AATATGA
1 AATATGA
26701766 AA
1 AA
26701768 AGGCTTCGGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.60, C:0.00, G:0.13, T:0.27
Consensus pattern (7 bp):
AATATGA
Found at i:26704666 original size:20 final size:20
Alignment explanation
Indices: 26704641--26704680 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
26704631 GGATAGAATC
26704641 CACCTAGACTTCACTTATTA
1 CACCTAGACTTCACTTATTA
26704661 CACCTAGACTTCACTTATTA
1 CACCTAGACTTCACTTATTA
26704681 TTCTGAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.30, G:0.05, T:0.35
Consensus pattern (20 bp):
CACCTAGACTTCACTTATTA
Found at i:26705434 original size:30 final size:30
Alignment explanation
Indices: 26705398--26705454 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
26705388 ACAGGCTGCA
26705398 ACATGGGCGTGTG-TCCAGCCCGTGTGGCTC
1 ACATGGGCGTGTGCT-CAGCCCGTGTGGCTC
*
26705428 ACATGGGCGTGTGCTCAGCCTGTGTGG
1 ACATGGGCGTGTGCTCAGCCCGTGTGG
26705455 AATTTGTCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 24 0.96
31 1 0.04
ACGTcount: A:0.11, C:0.26, G:0.39, T:0.25
Consensus pattern (30 bp):
ACATGGGCGTGTGCTCAGCCCGTGTGGCTC
Found at i:26711379 original size:18 final size:17
Alignment explanation
Indices: 26711356--26711398 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
26711346 AGAAAGGCGA
*
26711356 GGATGATGAATGAGTGAG
1 GGATGATGAAGGA-TGAG
*
26711374 GGATGAATGAGGGATGAG
1 GGATG-ATGAAGGATGAG
26711392 GGATGAT
1 GGATGAT
26711399 TGAAAAAGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 2 0.09
18 14 0.64
19 6 0.27
ACGTcount: A:0.33, C:0.00, G:0.47, T:0.21
Consensus pattern (17 bp):
GGATGATGAAGGATGAG
Found at i:26715418 original size:38 final size:38
Alignment explanation
Indices: 26715367--26715527 Score: 268
Period size: 38 Copynumber: 4.2 Consensus size: 38
26715357 TCGAAATATG
26715367 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
* *
26715405 ATATCCGAGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
*
26715443 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTATT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
* *
26715481 ATATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTATT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
*
26715519 ATATTCGGG
1 ATATCCGGG
26715528 CCTTTGAGCC
Statistics
Matches: 114, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 114 1.00
ACGTcount: A:0.21, C:0.23, G:0.25, T:0.30
Consensus pattern (38 bp):
ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
Found at i:26715617 original size:45 final size:45
Alignment explanation
Indices: 26715521--26715648 Score: 149
Period size: 46 Copynumber: 2.9 Consensus size: 45
26715511 CTGGTATTAT
* * * *
26715521 ATTCGGGCCTTT-GAGCCTAACAGACTATTATGCCGGTGAGACATT
1 ATTCGGGCCTTTCGAGCCTAGCAGGCTATAATGCCGGTGA-ACATG
26715566 ATTCGGGCCTTTCGAGCCTAGCAGGCTATAATGCCGGTGAA-ATG
1 ATTCGGGCCTTTCGAGCCTAGCAGGCTATAATGCCGGTGAACATG
* *
26715610 ATATCGGGCC--TCGAGCCTAGCAGGCGA-AATACCGGTGAA
1 AT-TCGGGCCTTTCGAGCCTAGCAGGCTATAATGCCGGTGAA
26715649 TGAATAAAAG
Statistics
Matches: 75, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
42 11 0.15
43 16 0.21
44 4 0.05
45 20 0.27
46 24 0.32
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.23
Consensus pattern (45 bp):
ATTCGGGCCTTTCGAGCCTAGCAGGCTATAATGCCGGTGAACATG
Found at i:26735557 original size:390 final size:390
Alignment explanation
Indices: 26734778--26735949 Score: 1874
Period size: 390 Copynumber: 3.0 Consensus size: 390
26734768 CGCCAAAAAT
* * * * *
26734778 TTGAT-GCGTGATATTCATGACAGGTTTTAAATATTTATAATGAATCGTTCTTGAAACTAGCTAT
1 TTGATCGCATGAT-TTCATGATAGGTTTTAAATATTTATAATTACTCGTTCTTG-AACTAACTAT
** * * * * * *
26734842 TATCACGATGAAGGCAAGTGTACCTATCGAATAGTAGTATAGCTTTAGTAAGACCGGATTATCGA
64 TATCGTGATGTAGGCAAGTGTACCTATCGAACAGTAGTATAGTTTTAGCAAGACCGGATTGTCAA
26734907 ACCCAAAGGAACTAAAAGTACTAGTATCAACTTTCTTTTTATTATCTAGCCTAAAAAATAAAAAG
129 ACCCAAAGGAACTAAAAGTACTAGTATCAACTTTCTTTTTATTATCTAGCCTAAAAAATAAAAAG
26734972 GGTTTTGTTTATCTAAATAATTAACTAAACTAAGAAATCATAGAAAAGAAATTTAGGGAAAATAC
194 GGTTTTGTTTATCTAAATAATTAACTAAACTAAGAAATCATAGAAAAGAAATTTAGGGAAAATAC
26735037 TTTTTGGAAAACTCGATTGATTAAGACAATACGTAAGAAAAAATCCACCTAGACTTCACTTGTTA
259 TTTTTGGAAAACTCGATTGATTAAGACAATACGTAAGAAAAAATCCACCTAGACTTCACTTGTTA
26735102 TTTGACTCTGAATCGAATGATTTATTCATTCAACTTGTTCCGTAGAGATCCCTAAGTTATATTAT
324 TTTGACTCTGAATCGAATGATTTATTCATTCAACTTGTTCCGTAGAGATCCCTAAGTTATATTAT
26735167 TA
389 TA
26735169 TTGATCGCATGATTTCATGATAGGTTTTAAATATTTATAATTACTCGTTCTTGAACTAACTATTA
1 TTGATCGCATGATTTCATGATAGGTTTTAAATATTTATAATTACTCGTTCTTGAACTAACTATTA
26735234 TCGTGATGTAGGCAAGTGTACCTATCGAACAGTAGTATAGTTTTAGCAAGACCGGATTGTCAAAC
66 TCGTGATGTAGGCAAGTGTACCTATCGAACAGTAGTATAGTTTTAGCAAGACCGGATTGTCAAAC
26735299 CCAAAGGAACTAAAAGTACTAGTATCAACTTTCTTTTTATTATCTAGCCTAAAAAATAAAAAGGG
131 CCAAAGGAACTAAAAGTACTAGTATCAACTTTCTTTTTATTATCTAGCCTAAAAAATAAAAAGGG
26735364 TTTTGTTTATCTAAATAATTAACTAAACTAAGAAATCATAGAAAAGAAATTTAGGGAAAATACTT
196 TTTTGTTTATCTAAATAATTAACTAAACTAAGAAATCATAGAAAAGAAATTTAGGGAAAATACTT
26735429 TTTGGAAAACTCGATTGATTAAGACAATACGTAAGAAAAAATCCACCTAGACTTCACTTGTTATT
261 TTTGGAAAACTCGATTGATTAAGACAATACGTAAGAAAAAATCCACCTAGACTTCACTTGTTATT
26735494 TGACTCTGAATCGAATGATTTATTCATTCAACTTGTTCCGTAGAGATCCCTAAGTTATATTATTA
326 TGACTCTGAATCGAATGATTTATTCATTCAACTTGTTCCGTAGAGATCCCTAAGTTATATTATTA
26735559 TTGATCGCATGATTTCATGATAGGTTTTAAATATTTATAATTACTCGTTCTTGAACTAACTATTA
1 TTGATCGCATGATTTCATGATAGGTTTTAAATATTTATAATTACTCGTTCTTGAACTAACTATTA
26735624 TCGTGATGTAGGCAAGTGTACCTATCGAACAGTAGTATAGTTTTAGCAAGACCGGATTGTCAAAC
66 TCGTGATGTAGGCAAGTGTACCTATCGAACAGTAGTATAGTTTTAGCAAGACCGGATTGTCAAAC
* * * * *
26735689 CCAAAGGAACTAAAAGTACTAGTAAT-AACTGTCTTTTTATTAACTAGCCT-AAGAATAGAGA-G
131 CCAAAGGAACTAAAAGTACTAGT-ATCAACTTTCTTTTTATTATCTAGCCTAAAAAATAAAAAGG
* * ** * * *
26735751 GTTTTGTTTTAAT-TAACTAATTATCTAAACTAAGAACGCACAGAGAAA-ATAA-TT-GGGGAAT
195 GTTTTG-TTT-ATCTAAATAATTAACTAAACTAAGAAATCATAGA-AAAGA-AATTTAGGGAAAA
* * * * *
26735812 TACTTTTGGGAAAAATCGATTGACTTAAGACAATACCTAAGGAAAAATCCACCTAGACTTTACTT
256 TACTTTTTGGAAAACTCGATTGA-TTAAGACAATACGTAAGAAAAAATCCACCTAGACTTCACTT
* * * * * *
26735877 GTTATTCTGGCTCCGAATCGGACGATTTATTCATTCAACTTGTTCCATAGAGATCCCGAAGTTAT
320 GTTATT-TGACTCTGAATCGAATGATTTATTCATTCAACTTGTTCCGTAGAGATCCCTAAGTTAT
*
26735942 GTTATTA
384 ATTATTA
26735949 T
1 T
26735950 CCCTATTCAA
Statistics
Matches: 736, Mismatches: 37, Indels: 17
0.93 0.05 0.02
Matches are distributed among these distances:
388 33 0.04
389 84 0.11
390 569 0.77
391 44 0.06
392 6 0.01
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.34
Consensus pattern (390 bp):
TTGATCGCATGATTTCATGATAGGTTTTAAATATTTATAATTACTCGTTCTTGAACTAACTATTA
TCGTGATGTAGGCAAGTGTACCTATCGAACAGTAGTATAGTTTTAGCAAGACCGGATTGTCAAAC
CCAAAGGAACTAAAAGTACTAGTATCAACTTTCTTTTTATTATCTAGCCTAAAAAATAAAAAGGG
TTTTGTTTATCTAAATAATTAACTAAACTAAGAAATCATAGAAAAGAAATTTAGGGAAAATACTT
TTTGGAAAACTCGATTGATTAAGACAATACGTAAGAAAAAATCCACCTAGACTTCACTTGTTATT
TGACTCTGAATCGAATGATTTATTCATTCAACTTGTTCCGTAGAGATCCCTAAGTTATATTATTA
Found at i:26736349 original size:22 final size:22
Alignment explanation
Indices: 26736321--26736364 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
26736311 TTTTAGTTCA
26736321 TAACTAAATAAGAAAACATCTC
1 TAACTAAATAAGAAAACATCTC
26736343 TAACTAAATAAGAAAACATCTC
1 TAACTAAATAAGAAAACATCTC
26736365 ATAAGAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.55, C:0.18, G:0.05, T:0.23
Consensus pattern (22 bp):
TAACTAAATAAGAAAACATCTC
Found at i:26738320 original size:12 final size:12
Alignment explanation
Indices: 26738305--26738329 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26738295 AAATATGCTA
26738305 AAAAATAAAAGT
1 AAAAATAAAAGT
26738317 AAAAATAAAAGT
1 AAAAATAAAAGT
26738329 A
1 A
26738330 GTTTTAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAAATAAAAGT
Found at i:26746177 original size:19 final size:19
Alignment explanation
Indices: 26746153--26746190 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
26746143 TTGGAGTTAG
26746153 AACAAATTCACAATGTGTT
1 AACAAATTCACAATGTGTT
*
26746172 AACAAATTCATAATGTGTT
1 AACAAATTCACAATGTGTT
26746191 CTATTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34
Consensus pattern (19 bp):
AACAAATTCACAATGTGTT
Found at i:26751695 original size:34 final size:34
Alignment explanation
Indices: 26751652--26751729 Score: 138
Period size: 34 Copynumber: 2.3 Consensus size: 34
26751642 ATATGTGAAA
*
26751652 TTAGCATGATCCATTTGGGGCAGGATAAATGTTG
1 TTAGCATGATCCATTTGGGGCAGGATAAAAGTTG
26751686 TTAGCATGATCCATTTGGGGCAGGATAAAAGTTG
1 TTAGCATGATCCATTTGGGGCAGGATAAAAGTTG
*
26751720 TGAGCATGAT
1 TTAGCATGAT
26751730 AGTGGATGGT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 42 1.00
ACGTcount: A:0.28, C:0.12, G:0.29, T:0.31
Consensus pattern (34 bp):
TTAGCATGATCCATTTGGGGCAGGATAAAAGTTG
Found at i:26755139 original size:27 final size:27
Alignment explanation
Indices: 26755120--26755250 Score: 163
Period size: 27 Copynumber: 4.9 Consensus size: 27
26755110 ATTACCAAAG
26755120 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * *
26755147 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
**
26755174 TACCCTCGATTTATAGAATTATTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * *
26755201 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * *
26755228 TACCCTTGATTTACAAAATTACC
1 TACCCTCGATTTATAGAATTACC
26755251 AAAATACCCT
Statistics
Matches: 93, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 93 1.00
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCGTTT
Found at i:26755178 original size:54 final size:54
Alignment explanation
Indices: 26755120--26755250 Score: 199
Period size: 54 Copynumber: 2.4 Consensus size: 54
26755110 ATTACCAAAG
26755120 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTGTTT
** * *
26755174 TACCCTCGATTTATAGAATTATTGTTTTACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTGTTT
* * *
26755228 TACCCTTGATTTACAAAATTACC
1 TACCCTCGATTTATAGAATTACC
26755251 AAAATACCCT
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 68 1.00
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.42
Consensus pattern (54 bp):
TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTGTTT
Found at i:26755258 original size:27 final size:27
Alignment explanation
Indices: 26755228--26755560 Score: 201
Period size: 27 Copynumber: 12.3 Consensus size: 27
26755218 ATTACTGTTT
*
26755228 TACCCTTGATTTACAAAATTACCAAAA
1 TACCCTTGATTTGCAAAATTACCAAAA
* *
26755255 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGATTTGCAAAATTACCAAAA
* * * * * *
26755282 TAACCTAG-TTTGTAAAATTGCTAAGA
1 TACCCTTGATTTGCAAAATTACCAAAA
* * **
26755308 TA-CCTCTGGTTTGTAAAATTACTGAAA
1 TACCCT-TGATTTGCAAAATTACCAAAA
** *
26755335 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTGCAAAATTACCAAAA
* *
26755362 TACCCCT-AGTTTGTAAAATTACCAAAA
1 TACCCTTGA-TTTGCAAAATTACCAAAA
* ** *
26755389 TACCAC-TGGTTTGTGAAATTACCGAAA
1 TACC-CTTGATTTGCAAAATTACCAAAA
** *
26755416 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTGCAAAATTACCAAAA
* *
26755443 TACCCCTGATTTACAAAATTA-CAGAAA
1 TACCCTTGATTTGCAAAATTACCA-AAA
***
26755470 TACCCTTGACTTT-CTAAAAATTATGGAAA
1 TACCCTTGA-TTTGC--AAAATTACCAAAA
* * * *
26755499 TACCATTGGTTTACAAAATTACGAAAA
1 TACCCTTGATTTGCAAAATTACCAAAA
** * * *
26755526 TACCCTTGGCTTGTAGATTTACCAAAA
1 TACCCTTGATTTGCAAAATTACCAAAA
*
26755553 CACCCTTG
1 TACCCTTG
26755561 TAGGATGAAA
Statistics
Matches: 246, Mismatches: 47, Indels: 26
0.77 0.15 0.08
Matches are distributed among these distances:
25 3 0.01
26 20 0.08
27 195 0.79
28 10 0.04
29 18 0.07
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
TACCCTTGATTTGCAAAATTACCAAAA
Found at i:26755259 original size:54 final size:54
Alignment explanation
Indices: 26755120--26755276 Score: 152
Period size: 54 Copynumber: 2.9 Consensus size: 54
26755110 ATTACCAAAG
* * **** *
26755120 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTACAAAATTACTGTTT
* * ****** *
26755174 TACCCTCGATTTATAGAATTATTGTTTTACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTACAAAATTACTGTTT
* *
26755228 TACCCTTGATTTACAAAATTACCAAAATACCCTTGGTTTACAAAATTAC
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTACAAAATTAC
26755277 CAAAATAACC
Statistics
Matches: 88, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 88 1.00
ACGTcount: A:0.31, C:0.20, G:0.09, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTACAAAATTACTGTTT
Found at i:26755275 original size:81 final size:81
Alignment explanation
Indices: 26755120--26755275 Score: 195
Period size: 81 Copynumber: 1.9 Consensus size: 81
26755110 ATTACCAAAG
* *****
26755120 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATT
* *
26755185 TATAGAATTATTGTTT
66 TACAAAATTATTGTTT
* * * * *
26755201 TACCCTTGATTTACAGAATTACTGTTTTACCCTTGATTTACAAAATTACCAAAATACCCTTGGTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATT
26755266 TACAAAATTA
66 TACAAAATTA
26755276 CCAAAATAAC
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
81 62 1.00
ACGTcount: A:0.31, C:0.20, G:0.09, T:0.40
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATT
TACAAAATTATTGTTT
Found at i:26755374 original size:54 final size:53
Alignment explanation
Indices: 26755242--26755447 Score: 225
Period size: 54 Copynumber: 3.8 Consensus size: 53
26755232 CTTGATTTAC
* * ** *
26755242 AAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATAACCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTAGTTTGT
* * * * * ** *
26755295 AAAATTGCTAAGATACCTCTGGTTTGTAAAATTACTGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCT-AGTTTGT
*
26755349 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTGGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACC-CTAGTTTGT
* * *
26755403 GAAATTACCGAAATA-CCCTCAATTTGTAAAATTACCAAAATACCC
1 AAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCC
26755448 CTGATTTACA
Statistics
Matches: 127, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
53 41 0.32
54 84 0.66
55 2 0.02
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (53 bp):
AAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTAGTTTGT
Found at i:26755408 original size:81 final size:81
Alignment explanation
Indices: 26755242--26755449 Score: 292
Period size: 81 Copynumber: 2.6 Consensus size: 81
26755232 CTTGATTTAC
* *** ** * * *
26755242 AAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATA-ACCTAGTTTGTAAAATTGCTAA
1 AAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
* *
26755306 GATACCTCTGGTTTGT
66 AATACCACTGGTTTGT
*
26755322 AAAATTACTGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
26755387 AATACCACTGGTTTGT
66 AATACCACTGGTTTGT
*
26755403 GAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT
1 AAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT
26755450 GATTTACAAA
Statistics
Matches: 113, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
80 35 0.31
81 78 0.69
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.30
Consensus pattern (81 bp):
AAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
AATACCACTGGTTTGT
Found at i:26755461 original size:81 final size:81
Alignment explanation
Indices: 26755242--26755473 Score: 265
Period size: 81 Copynumber: 2.9 Consensus size: 81
26755232 CTTGATTTAC
* *** ** * ** *
26755242 AAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATA-ACCTAGTTTGTAAAATTGCTA-
1 AAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTTTACAAAATTAC-AG
* *
26755305 AGATACCTCTGGTTTGT
65 AAATACCACTGGTTTGT
* **
26755322 AAAATTACTGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCA-
1 AAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTTTACAAAATTA-CAG
26755386 AAATACCACTGGTTTGT
65 AAATACCACTGGTTTGT
*
26755403 GAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT-GATTTACAAAATTACAG
1 AAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAG-TTTACAAAATTACAG
26755467 AAATACC
65 AAATACC
26755474 CTTGACTTTC
Statistics
Matches: 133, Mismatches: 15, Indels: 7
0.86 0.10 0.05
Matches are distributed among these distances:
80 38 0.29
81 94 0.71
82 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (81 bp):
AAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTTTACAAAATTACAGA
AATACCACTGGTTTGT
Found at i:26755620 original size:26 final size:27
Alignment explanation
Indices: 26755578--26755654 Score: 68
Period size: 27 Copynumber: 2.9 Consensus size: 27
26755568 AAATGACTAA
*
26755578 AATACCCCTAATA-GGTAAAAAGACCAT
1 AATACCCCT-GTAGGGTAAAAAGACCAT
* ** **
26755605 AA-AGCCCTGTAGGGTAAAGTGACTGT
1 AATACCCCTGTAGGGTAAAAAGACCAT
*
26755631 AATACCCCTGTATGGTAAAAAGAC
1 AATACCCCTGTAGGGTAAAAAGAC
26755655 GAATATGCCC
Statistics
Matches: 38, Mismatches: 10, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
25 2 0.05
26 17 0.45
27 19 0.50
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.21
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCAT
Found at i:26756741 original size:22 final size:22
Alignment explanation
Indices: 26756689--26756753 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
26756679 TTAAAGCCTT
* *
26756689 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
26756711 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
26756733 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
26756754 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:26757156 original size:6 final size:6
Alignment explanation
Indices: 26757118--26757305 Score: 118
Period size: 6 Copynumber: 30.3 Consensus size: 6
26757108 TTGCATTCAC
* * * *
26757118 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTA ATTCT-
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
26757167 ATTACCTG ATACTG ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * * *
26757218 ATTTTA ATTCT- ATTACCTG ATACTG ATTCTG ATTTTG ATTCTG -TTACCTG
1 ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG
*
26757268 ATACTG ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
26757306 AATGTTTCTT
Statistics
Matches: 142, Mismatches: 22, Indels: 36
0.71 0.11 0.18
Matches are distributed among these distances:
5 13 0.09
6 103 0.73
7 19 0.13
8 7 0.05
ACGTcount: A:0.21, C:0.16, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:26757172 original size:31 final size:31
Alignment explanation
Indices: 26757118--26757291 Score: 294
Period size: 31 Copynumber: 5.6 Consensus size: 31
26757108 TTGCATTCAC
26757118 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
* *
26757150 ATTCTGATTTTAATTCTATTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
26757181 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* *
26757212 ATTCTGATTTTAATTCTATTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
26757243 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
26757274 ATTCTGATTCTGATTCTG
1 ATTCTGATTTTGATTCTG
26757292 ATTCTAGTTC
Statistics
Matches: 133, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
31 126 0.95
32 7 0.05
ACGTcount: A:0.21, C:0.16, G:0.14, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:26765942 original size:28 final size:26
Alignment explanation
Indices: 26765897--26765967 Score: 70
Period size: 26 Copynumber: 2.7 Consensus size: 26
26765887 AAAAGCAGCT
* * * *
26765897 AAATTACTATAATGCCCCTATGTATGGA
1 AAATTACTGTTATACCCCTA-G-ATGCA
*
26765925 AAATTACTGTTATACCCCTAGGTGCA
1 AAATTACTGTTATACCCCTAGATGCA
*
26765951 AAATTACCGTTATACCC
1 AAATTACTGTTATACCC
26765968 TAGGGTTAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
26 19 0.51
27 1 0.03
28 17 0.46
ACGTcount: A:0.34, C:0.23, G:0.13, T:0.31
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGATGCA
Done.