Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 80 of 313
Found at i:27047046 original size:36 final size:36
Alignment explanation
Indices: 27047006--27047080 Score: 141
Period size: 36 Copynumber: 2.1 Consensus size: 36
27046996 ATACAAAGTT
*
27047006 AAAATAAAGGGAATTTTTAGGGTTTTTATAATAATA
1 AAAATAAAGGGAAGTTTTAGGGTTTTTATAATAATA
27047042 AAAATAAAGGGAAGTTTTAGGGTTTTTATAATAATA
1 AAAATAAAGGGAAGTTTTAGGGTTTTTATAATAATA
27047078 AAA
1 AAA
27047081 GAAAATAGCA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.47, C:0.00, G:0.17, T:0.36
Consensus pattern (36 bp):
AAAATAAAGGGAAGTTTTAGGGTTTTTATAATAATA
Found at i:27048495 original size:6 final size:6
Alignment explanation
Indices: 27048481--27048515 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
27048471 TCTTATCTTA
* *
27048481 AGTAGG AGTAAG AGTAGG AGTAGG AGTAGT AGTAG
1 AGTAGG AGTAGG AGTAGG AGTAGG AGTAGG AGTAG
27048516 AATTTTTTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.37, C:0.00, G:0.43, T:0.20
Consensus pattern (6 bp):
AGTAGG
Found at i:27051330 original size:17 final size:17
Alignment explanation
Indices: 27051305--27051346 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
27051295 TGTTTTGCAA
* *
27051305 TTAAGTTTTCGTTATTC
1 TTAATTTTTCATTATTC
27051322 TTAATTTTTCATTATTC
1 TTAATTTTTCATTATTC
27051339 TTAATTTT
1 TTAATTTT
27051347 GGCTCTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.21, C:0.10, G:0.05, T:0.64
Consensus pattern (17 bp):
TTAATTTTTCATTATTC
Found at i:27051641 original size:14 final size:13
Alignment explanation
Indices: 27051582--27051680 Score: 55
Period size: 14 Copynumber: 7.2 Consensus size: 13
27051572 TTGCTATTAT
27051582 TTTTATGTT-TCTA
1 TTTTAT-TTATCTA
27051595 TTTATATTTAT-T-
1 TTT-TATTTATCTA
*
27051607 TTCTTATTCTA-ATA
1 TT-TTATT-TATCTA
27051621 TTATTATTTATCTAA
1 TT-TTATTTATCT-A
27051636 TTTTATTTATCTA
1 TTTTATTTATCTA
*
27051649 TTTGTATTTCTACTA
1 TTT-TATTTAT-CTA
27051664 TTATTATATT-TCTA
1 TT-TTAT-TTATCTA
27051678 TTT
1 TTT
27051681 ATATACTAAT
Statistics
Matches: 71, Mismatches: 3, Indels: 24
0.72 0.03 0.24
Matches are distributed among these distances:
12 6 0.08
13 17 0.24
14 33 0.46
15 12 0.17
16 3 0.04
ACGTcount: A:0.24, C:0.08, G:0.02, T:0.66
Consensus pattern (13 bp):
TTTTATTTATCTA
Found at i:27051869 original size:51 final size:49
Alignment explanation
Indices: 27051803--27051900 Score: 128
Period size: 51 Copynumber: 2.0 Consensus size: 49
27051793 CACAACGCTC
*
27051803 ATTTCAAATTTTTACACATTATTTACTTT-AATAT-TTTCATATATTATGT
1 ATTTCAAATTTTTACACATTATATACTTTGAAT-TGTTT-ATATATTATGT
*
27051852 ATTTCAAACTTTTTTACACATTATATATTTTGAATTGTTTATATATTAT
1 ATTTCAAA--TTTTTACACATTATATACTTTGAATTGTTTATATATTAT
27051901 TTTTAAAGAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
49 8 0.19
51 29 0.67
52 6 0.14
ACGTcount: A:0.33, C:0.09, G:0.03, T:0.55
Consensus pattern (49 bp):
ATTTCAAATTTTTACACATTATATACTTTGAATTGTTTATATATTATGT
Found at i:27058507 original size:45 final size:45
Alignment explanation
Indices: 27058478--27058644 Score: 325
Period size: 45 Copynumber: 3.7 Consensus size: 45
27058468 AAATTACAAA
27058478 TCTTATCTCCATGTATCGACTATGGAGCAGATAAAAAATGGCGAG
1 TCTTATCTCCATGTATCGACTATGGAGCAGATAAAAAATGGCGAG
27058523 TCTTATCTCCATGTATCGACTATGGAGCAGATAAAAAATGGCGAG
1 TCTTATCTCCATGTATCGACTATGGAGCAGATAAAAAATGGCGAG
27058568 TCTTATCTCCATGTATCGACTATGGAGCAGATAAAAAATGGCGAG
1 TCTTATCTCCATGTATCGACTATGGAGCAGATAAAAAATGGCGAG
*
27058613 TCTTATCTCCATGTATCGGCTATGGAGCAGAT
1 TCTTATCTCCATGTATCGACTATGGAGCAGAT
27058645 TTTAGCCACC
Statistics
Matches: 121, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
45 121 1.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (45 bp):
TCTTATCTCCATGTATCGACTATGGAGCAGATAAAAAATGGCGAG
Found at i:27058560 original size:90 final size:89
Alignment explanation
Indices: 27058458--27058644 Score: 311
Period size: 90 Copynumber: 2.1 Consensus size: 89
27058448 GTAGCAAGGA
*
27058458 AGCAGACTAAAAATTACAAATCTTATCTCCATGTATCGACTATGGAGCAGATAAAAAATGGCGAG
1 AGCAGA-TAAAAATGACAAATCTTATCTCCATGTATCGACTATGGAGCAGATAAAAAATGGCGAG
27058523 TCTTATCTCCATGTATCGACTATGG
65 TCTTATCTCCATGTATCGACTATGG
* * *
27058548 AGCAGATAAAAAATGGCGAGTCTTATCTCCATGTATCGACTATGGAGCAGATAAAAAATGGCGAG
1 AGCAGAT-AAAAATGACAAATCTTATCTCCATGTATCGACTATGGAGCAGATAAAAAATGGCGAG
*
27058613 TCTTATCTCCATGTATCGGCTATGG
65 TCTTATCTCCATGTATCGACTATGG
27058638 AGCAGAT
1 AGCAGAT
27058645 TTTAGCCACC
Statistics
Matches: 91, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
89 1 0.01
90 90 0.99
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (89 bp):
AGCAGATAAAAATGACAAATCTTATCTCCATGTATCGACTATGGAGCAGATAAAAAATGGCGAGT
CTTATCTCCATGTATCGACTATGG
Found at i:27058755 original size:133 final size:133
Alignment explanation
Indices: 27058302--27058777 Score: 506
Period size: 133 Copynumber: 3.6 Consensus size: 133
27058292 TTTATAGGTT
* * * *
27058302 TTATCTTCCTGAGGTAACAGGGAAGCAGATTAAAAATTACAGATCTTATCTCCATGTATCGGCTA
1 TTATCTTCCTAAGGTAGCAAGGAAGCAGACTAAAAATTACAGATCTTATCTCCATGTATCGGCTA
27058367 TGGAGCAGATTTTAGCCACCAGCCTTATCTTTCTGAGGTAGCAAGAGAGCAAGTTGAAGATACAA
66 TGGAGCAGATTTTAGCCACCAGCCTTATCTTTCTGAGGTAGCAAGAGAGCAAGTTGAAGATACAA
27058432 GTC
131 GTC
* *
27058435 TTATCTTCCTAAGGTAGCAAGGAAGCAGACTAAAAATTACAAATCTTATCTCCATGTATCGACTA
1 TTATCTTCCTAAGGTAGCAAGGAAGCAGACTAAAAATTACAGATCTTATCTCCATGTATCGGCTA
*** **** * * * * * ** *
27058500 TGGAGCAGATAAAAAATGGCGAGTCTTATC-TCCATGTA--TCGACTATG-GAGC-AGATAAAAA
66 TGGAGCAGAT-TTTAGCCACCAGCCTTATCTTTC-TG-AGGTAG-C-AAGAGAGCAAG-TTGAAG
* *
27058560 ATGGCGAGTC
125 AT-ACAAGTC
* * **
27058570 TTATC-TCC--ATGTATCGACTATGG-AGCAGA-TAAAAAATGGC-GAGTCTTATCTCCATGTAT
1 TTATCTTCCTAAGGTA--G-C-AAGGAAGCAGACT-AAAAATTACAGA-TCTTATCTCCATGTAT
27058629 CGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTTTCTGAGGTAGCAAGAGAGCAAGTTGAAG
60 CGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTTTCTGAGGTAGCAAGAGAGCAAGTTGAAG
27058694 ATACAAGTC
125 ATACAAGTC
*
27058703 TTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTA
1 TTATCTTCCTAAGGTAGCAAGGAAGCAGACTAAAAATTACAGATCTTATCTCCATGTATCGGCTA
27058768 TGGAGCAGAT
66 TGGAGCAGAT
27058778 CAAAAATGGA
Statistics
Matches: 268, Mismatches: 51, Indels: 48
0.73 0.14 0.13
Matches are distributed among these distances:
132 7 0.03
133 133 0.50
134 57 0.21
135 64 0.24
136 7 0.03
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (133 bp):
TTATCTTCCTAAGGTAGCAAGGAAGCAGACTAAAAATTACAGATCTTATCTCCATGTATCGGCTA
TGGAGCAGATTTTAGCCACCAGCCTTATCTTTCTGAGGTAGCAAGAGAGCAAGTTGAAGATACAA
GTC
Found at i:27058775 original size:45 final size:44
Alignment explanation
Indices: 27058726--27059001 Score: 150
Period size: 45 Copynumber: 6.2 Consensus size: 44
27058716 GTAGCAAGGA
27058726 AGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGG
1 AGCAGA-TGAAAATTACAGATCTTATCTCCATGTATCGGCTATGG
* * * * **
27058771 AGCAGATCAAAAATGGAAAG-TCTTATCTCCATGTATTGGCTACAG
1 AGCAGAT-GAAAAT-TACAGATCTTATCTCCATGTATCGGCTATGG
*** *** * * * *
27058816 AGCAGATTTTAGCCACCAG-CCTTATCTCTC-TGAAGT-AGC-AAGAG
1 AGCAGATGAAAATTA-CAGATCTTATCTC-CATGTA-TCGGCTATG-G
* ** * * *
27058860 AGCAGGTTGAAAATTGTAGGTCTTAACTCCATGAATCGGCTATGG
1 AGCA-GATGAAAATTACAGATCTTATCTCCATGTATCGGCTATGG
* *
27058905 AGCAGACTGAGAATTACAGATCTTATCTCTATGTATCGGCTATGG
1 AGCAGA-TGAAAATTACAGATCTTATCTCCATGTATCGGCTATGG
** * * *
27058950 AGCAGATCGAAAATGGC-GAGTCCTATCTCCATGTCTCAGCTATGG
1 AGCAGAT-GAAAATTACAGA-TCTTATCTCCATGTATCGGCTATGG
27058995 AGCAGAT
1 AGCAGAT
27059002 TTTAGCTACC
Statistics
Matches: 171, Mismatches: 46, Indels: 28
0.70 0.19 0.11
Matches are distributed among these distances:
43 2 0.01
44 30 0.18
45 134 0.78
46 5 0.03
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.27
Consensus pattern (44 bp):
AGCAGATGAAAATTACAGATCTTATCTCCATGTATCGGCTATGG
Found at i:27058932 original size:268 final size:268
Alignment explanation
Indices: 27058345--27058915 Score: 713
Period size: 268 Copynumber: 2.1 Consensus size: 268
27058335 AAATTACAGA
* * * * * *
27058345 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTTTCTGAGGTAGCA
1 TCTTAACTCCATGAATCGGCTATGGAGCAGATCTGAGCAAACAGCCTTATCTTTCTGAGGTAGCA
27058410 AGAGAGCAAGTTGAAGATACAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTAAAAATTAC
66 AGAGAGCAAGTTGAAGATACAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTAAAAATTAC
**
27058475 AAATCTTATCTCCATGTATCGACTATGGAGCAGATAAAAAATGGCGAGTCTTATCTCCATGTATC
131 AAATCTTATCTCCATGTATCGACTATGGAGCAGATAAAAAATGGAAAGTCTTATCTCCATGTATC
** *** * * * * *
27058540 GACTATGGAGCAGATAAAAAATGGCGAGTCTTATCTCCATGTATCGACTATGGAGCAGATAAAAA
196 GACTACAGAGCAGATAAAAAACCACCAGCCTTATCTCCATGAATAGACTAAGGAGCAGATAAAAA
*
27058605 ATGGCGAG
261 ATGGAGAG
* * * * * *
27058613 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTTTCTGAGGTAGCA
1 TCTTAACTCCATGAATCGGCTATGGAGCAGATCTGAGCAAACAGCCTTATCTTTCTGAGGTAGCA
*
27058678 AGAGAGCAAGTTGAAGATACAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAAATTAC
66 AGAGAGCAAGTTGAAGATACAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTAAAAATTAC
* * * *
27058743 AGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGAAAGTCTTATCTCCATGTATT
131 AAATCTTATCTCCATGTATCGACTATGGAGCAGATAAAAAATGGAAAGTCTTATCTCCATGTATC
* *** * * *
27058808 GGCTACAGAGCAGAT-TTTAGCCACCAGCCTTATCTCTC-TGAAGTAG-C-AAGAGAGCAGGTTG
196 GACTACAGAGCAGATAAAAAACCACCAGCCTTATCTC-CATGAA-TAGACTAAG-GAGCA-GATA
* *
27058869 AAAATTGTAG-G
257 AAAAATGGAGAG
27058880 TCTTAACTCCATGAATCGGCTATGGAGCAGA-CTGAG
1 TCTTAACTCCATGAATCGGCTATGGAGCAGATCTGAG
27058916 AATTACAGAT
Statistics
Matches: 268, Mismatches: 31, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
266 5 0.02
267 51 0.19
268 212 0.79
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (268 bp):
TCTTAACTCCATGAATCGGCTATGGAGCAGATCTGAGCAAACAGCCTTATCTTTCTGAGGTAGCA
AGAGAGCAAGTTGAAGATACAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTAAAAATTAC
AAATCTTATCTCCATGTATCGACTATGGAGCAGATAAAAAATGGAAAGTCTTATCTCCATGTATC
GACTACAGAGCAGATAAAAAACCACCAGCCTTATCTCCATGAATAGACTAAGGAGCAGATAAAAA
ATGGAGAG
Found at i:27058979 original size:179 final size:179
Alignment explanation
Indices: 27058522--27059106 Score: 729
Period size: 179 Copynumber: 3.3 Consensus size: 179
27058512 AAAATGGCGA
* * **
27058522 GTCTTATCTCCATGTATC-GACTATGGAGCAGA-TAAAAAATGGC-GAGTCTTATCTCCATGTAT
1 GTCTTATCTCCATGAATCAG-CTATGGAGCAGACT-GAAAATTACAGA-TCTTATCTCCATGTAT
* *
27058584 CGACTATGGAGCAGATAAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTA
63 CGGCTATGGAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTA
* * * * *
27058649 GCCACCAGCCTTATCTTTCTGAGGTAGCAAGAGAGCAAGTTGAAGA-TACAA
128 GCCACCAGCCTTATCTCTCTGAAGTAGCAAGAGAGCAGGTTGAAAATTACAG
*
27058700 GTCTTATCTTCC-T-AAGGT-AGC-AAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTA
1 GTCTTATC-TCCATGAA--TCAGCTATGG-AGCAGACTGAAAATTACAGATCTTATCTCCATGTA
** * **
27058761 TCGGCTATGGAGCAGATCAAAAATGGAAAGTCTTATCTCCATGTATTGGCTACAGAGCAGATTTT
62 TCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTT
**
27058826 AGCCACCAGCCTTATCTCTCTGAAGTAGCAAGAGAGCAGGTTGAAAATTGTAG
127 AGCCACCAGCCTTATCTCTCTGAAGTAGCAAGAGAGCAGGTTGAAAATTACAG
* * * *
27058879 GTCTTAACTCCATGAATCGGCTATGGAGCAGACTGAGAATTACAGATCTTATCTCTATGTATCGG
1 GTCTTATCTCCATGAATCAGCTATGGAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGG
* * * * *
27058944 CTATGGAGCAGATCGAAAATGGCGAGTCCTATCTCCATGTCTCAGCTATGGAGCAGATTTTAGCT
66 CTATGGAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCC
* * *
27059009 ACCAACCTTATCTCTCTG-AGCTAGCAGGAGAACAGGTTGAAAATTACAG
131 ACCAGCCTTATCTCTCTGAAG-TAGCAAGAGAGCAGGTTGAAAATTACAG
* * *
27059058 GTCTTATCTTCATGTATCAGCTATGGAGCAGACTGAAAAATACAGATCT
1 GTCTTATCTCCATGAATCAGCTATGGAGCAGACTGAAAATTACAGATCT
27059107 CCCCTAAACA
Statistics
Matches: 349, Mismatches: 45, Indels: 25
0.83 0.11 0.06
Matches are distributed among these distances:
177 4 0.01
178 144 0.41
179 196 0.56
180 5 0.01
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.28
Consensus pattern (179 bp):
GTCTTATCTCCATGAATCAGCTATGGAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGG
CTATGGAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCC
ACCAGCCTTATCTCTCTGAAGTAGCAAGAGAGCAGGTTGAAAATTACAG
Found at i:27059066 original size:89 final size:89
Alignment explanation
Indices: 27058790--27059089 Score: 245
Period size: 89 Copynumber: 3.4 Consensus size: 89
27058780 AAAATGGAAA
** ** * *
27058790 GTCTTATCTCCATGTATTGGCTACAGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAAG-TAG
1 GTCTTATCTCCATGTATCAGCTATGGAGCAGATTTTAGCTACCAACCTTATCTCTCTGAAGCTAG
* *
27058854 CAAGAGAGCAGGTTGAAAATTGTAG
66 CAGGAGA-CAGGTTGAAAATTGCAG
* * * * * * * * * *
27058879 GTCTTAACTCCATGAATCGGCTATGGAGCAGA-CTGAGAATTA-CAGATCTTATCTCTATGTATC
1 GTCTTATCTCCATGTATCAGCTATGGAGCAGATTTTAG--CTACCA-ACCTTATCTCTCTGAAGC
* * * *
27058942 -GGCTATGGAG-CAGATCGAAAATGGC-G
63 TAGC-A-GGAGACAGGTTGAAAATTGCAG
* *
27058968 AGTCCTATCTCCATGTCTCAGCTATGGAGCAGATTTTAGCTACCAACCTTATCTCTCTG-AGCTA
1 -GTCTTATCTCCATGTATCAGCTATGGAGCAGATTTTAGCTACCAACCTTATCTCTCTGAAGCTA
*
27059032 GCAGGAGAACAGGTTGAAAATTACAG
65 GCAGGAG-ACAGGTTGAAAATTGCAG
*
27059058 GTCTTATCTTCATGTATCAGCTATGGAGCAGA
1 GTCTTATCTCCATGTATCAGCTATGGAGCAGA
27059090 CTGAAAAATA
Statistics
Matches: 159, Mismatches: 39, Indels: 26
0.71 0.17 0.12
Matches are distributed among these distances:
87 4 0.03
88 6 0.04
89 86 0.54
90 56 0.35
91 4 0.03
92 3 0.02
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (89 bp):
GTCTTATCTCCATGTATCAGCTATGGAGCAGATTTTAGCTACCAACCTTATCTCTCTGAAGCTAG
CAGGAGACAGGTTGAAAATTGCAG
Found at i:27059095 original size:45 final size:44
Alignment explanation
Indices: 27058867--27059102 Score: 108
Period size: 45 Copynumber: 5.3 Consensus size: 44
27058857 GAGAGCAGGT
** * * * *
27058867 TGAAAATTGTAGGTCTTAACTCCATGAATCGGCTATGGAGCAGA
1 TGAAAATTACAGGTCTTATCTTCATGTATCAGCTATGGAGCAGA
* * *
27058911 CTGAGAATTACAGATCTTATC-TCTATGTATCGGCTATGGAGCAGA
1 -TGAAAATTACAGGTCTTATCTTC-ATGTATCAGCTATGGAGCAGA
** * * *
27058956 TCGAAAATGGC-GAGTCCTATCTCCATGTCTCAGCTATGGAGCAGA
1 T-GAAAATTACAG-GTCTTATCTTCATGTATCAGCTATGGAGCAGA
*** ** ** * *
27059001 TTTTAGCTACCA-ACCTTATCTCTC-TG-AGCTAGC-A-GGAGAACAGGT
1 TGAAAATTA-CAGGTCTTATCT-TCATGTATC-AGCTATGGAG--CA-GA
27059046 TGAAAATTACAGGTCTTATCTTCATGTATCAGCTATGGAGCAGA
1 TGAAAATTACAGGTCTTATCTTCATGTATCAGCTATGGAGCAGA
*
27059090 CTGAAAAATACAG
1 -TGAAAATTACAG
27059103 ATCTCCCCTA
Statistics
Matches: 135, Mismatches: 39, Indels: 34
0.65 0.19 0.16
Matches are distributed among these distances:
42 4 0.03
43 2 0.01
44 22 0.16
45 99 0.73
46 4 0.03
47 4 0.03
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (44 bp):
TGAAAATTACAGGTCTTATCTTCATGTATCAGCTATGGAGCAGA
Found at i:27059197 original size:40 final size:40
Alignment explanation
Indices: 27059151--27059288 Score: 111
Period size: 40 Copynumber: 3.4 Consensus size: 40
27059141 AAGCCTTAAC
*
27059151 CCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCT
1 CCCCTAAACAGTAGGGTAACAGGCTGGAAAATACAGATCT
* * * * * *
27059191 CCCCTAAACAGTAGTGG-AGCA-GATCGAAGACAGCA-AGCCTT
1 CCCCTAAACAGTAG-GGTAACAGGCTGGAAAATA-CAGA-TC-T
* *
27059232 AACCCCCTAAGCAGTAAGGTAACAGGCTGGAAAATACAGATCT
1 ---CCCCTAAACAGTAGGGTAACAGGCTGGAAAATACAGATCT
27059275 CCCCTAAACAGTAG
1 CCCCTAAACAGTAG
27059289 TGGAGCAAAT
Statistics
Matches: 71, Mismatches: 17, Indels: 20
0.66 0.16 0.19
Matches are distributed among these distances:
39 8 0.11
40 31 0.44
41 3 0.04
43 3 0.04
44 18 0.25
45 8 0.11
ACGTcount: A:0.36, C:0.25, G:0.22, T:0.16
Consensus pattern (40 bp):
CCCCTAAACAGTAGGGTAACAGGCTGGAAAATACAGATCT
Found at i:27059240 original size:44 final size:44
Alignment explanation
Indices: 27059107--27059247 Score: 107
Period size: 44 Copynumber: 3.3 Consensus size: 44
27059097 ATACAGATCT
* * *
27059107 CCCCTAAACAATAATGGAGCAGATCAAAGACAGCAAGCCTTAAC
1 CCCCTAAACAGTAGTGGAGCAGATCGAAGACAGCAAGCCTTAAC
* * * * * * *
27059151 CCCCTAAGCAGTAG-GGTAACAGGCTGGAAAATA-C-AG----ATC
1 CCCCTAAACAGTAGTGG-AGCA-GATCGAAGACAGCAAGCCTTAAC
27059190 TCCCCTAAACAGTAGTGGAGCAGATCGAAGACAGCAAGCCTTAAC
1 -CCCCTAAACAGTAGTGGAGCAGATCGAAGACAGCAAGCCTTAAC
*
27059235 CCCCTAAGCAGTA
1 CCCCTAAACAGTA
27059248 AGGTAACAGG
Statistics
Matches: 69, Mismatches: 18, Indels: 20
0.64 0.17 0.19
Matches are distributed among these distances:
39 9 0.13
40 17 0.25
41 4 0.06
43 4 0.06
44 27 0.39
45 8 0.12
ACGTcount: A:0.38, C:0.27, G:0.21, T:0.15
Consensus pattern (44 bp):
CCCCTAAACAGTAGTGGAGCAGATCGAAGACAGCAAGCCTTAAC
Found at i:27059458 original size:44 final size:44
Alignment explanation
Indices: 27059322--27059891 Score: 227
Period size: 44 Copynumber: 13.0 Consensus size: 44
27059312 CCTTAACCCT
*
27059322 CTAAGCAGTAG-GGTAATAGGCTAGAAAATTACAGATCTTA--TCC
1 CTAAGCAGTAGTGG-AACAGGCT-GAAAATTACAGATCTTATCTCC
* * ** * * * *
27059365 CTAAACAGTAGTGGAGCAGATTGAAGA-TAGCA-AGCCTTAACCCC
1 CTAAGCAGTAGTGGAACAGGCTGAAAATTA-CAGA-TCTTATCTCC
*
27059409 CTAAGCAGTAG-GGTAACAGGCTGAAAATTACAGATCTTATCTCT
1 CTAAGCAGTAGTGG-AACAGGCTGAAAATTACAGATCTTATCTCC
** * ** * * *
27059453 CTAAGCAGTAGTGGAGTA-GATCGAAGAGGGT-GAG-CCTTAAGC-CC
1 CTAAGCAGTAGTGGAACAGGCT-GAA-A-ATTACAGATCTT-ATCTCC
* * * * *
27059497 TTAAGTAGTAG-GGTAATAGGCTGAAAATTACAGATATTATCTCT
1 CTAAGCAGTAGTGG-AACAGGCTGAAAATTACAGATCTTATCTCC
* * ** * * *
27059541 CTAAGCAGTAGTGGAGCA-GATCGAAGAGGGTA-AG-CCTTAACCCC
1 CTAAGCAGTAGTGGAACAGGCT-GAA-A-ATTACAGATCTTATCTCC
*
27059585 CTAAGCAGTAAG-GTAACAGGCTGAAAATTACAGATCTTATCTCC
1 CTAAGCAGT-AGTGGAACAGGCTGAAAATTACAGATCTTATCTCC
* ** * *
27059629 CTAAGCAGTAGTGGAACA-GATCGAAGACGGT-GA-ACCTTATC-CC
1 CTAAGCAGTAGTGGAACAGGCT-GAA-A-ATTACAGATCTTATCTCC
* * * * *
27059672 TCTAAGCAGT-GGGGAAACAAGCTG-AATTTAGAAATCTTATCTCC
1 -CTAAGCAGTAGTGG-AACAGGCTGAAAATTACAGATCTTATCTCC
* * *
27059716 CTAAGCAGTAG-GGAAACAAGTTGAAAATTACATATCTTATCTCC
1 CTAAGCAGTAGTGG-AACAGGCTGAAAATTACAGATCTTATCTCC
* * * * ** *
27059760 CTAAGCAGTAGCGGAGCA-GATCGAAAA-CAGTGAGCCTTATCTCC
1 CTAAGCAGTAGTGGAACAGGCT-GAAAATTACAGA-TCTTATCTCC
* * **
27059804 CTGAGTAGT-GTGGAGTAGGCTGAAAATTACAGATCTTATCTCC
1 CTAAGCAGTAGTGGAACAGGCTGAAAATTACAGATCTTATCTCC
* * * *
27059847 CTAAGCAGTAGTGGAGCAGACTGAAGATTACTAGATTTTATCTCC
1 CTAAGCAGTAGTGGAACAGGCTGAAAATTAC-AGATCTTATCTCC
27059892 TTTAAGTTCC
Statistics
Matches: 388, Mismatches: 94, Indels: 88
0.68 0.16 0.15
Matches are distributed among these distances:
41 4 0.01
42 16 0.04
43 98 0.25
44 227 0.59
45 39 0.10
46 4 0.01
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (44 bp):
CTAAGCAGTAGTGGAACAGGCTGAAAATTACAGATCTTATCTCC
Found at i:27059507 original size:88 final size:88
Alignment explanation
Indices: 27059103--27059726 Score: 745
Period size: 88 Copynumber: 7.2 Consensus size: 88
27059093 AAAAATACAG
* * * * *
27059103 ATCTCCCCTAAACAATAATGGAGCAGATCAAAGACAGCAAGCCTTAACCCCCTAAGCAGTAGGGT
1 ATCT-CCCTAAGCAGTAGTGGAGCAGATCGAAGACAGTAAGCCTTAACCCCCTAAGCAGTAGGGT
27059168 AACAGGCTGGAAAA-TACAGATC--
65 AACAGGCT-GAAAATTACAGATCTT
* * *
27059190 -TC-CCCTAAACAGTAGTGGAGCAGATCGAAGACAGCAAGCCTTAACCCCCTAAGCAGTAAGGTA
1 ATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGTAAGCCTTAACCCCCTAAGCAGTAGGGTA
27059253 ACAGGCTGGAAAA-TACAGATC--
66 ACAGGCT-GAAAATTACAGATCTT
* * *
27059274 -TC-CCCTAAACAGTAGTGGAGCAAATCGAAGACAGTAAGCCTTAACCCTCTAAGCAGTAGGGTA
1 ATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGTAAGCCTTAACCCCCTAAGCAGTAGGGTA
*
27059337 ATAGGCTAGAAAATTACAGATCTT
66 ACAGGCT-GAAAATTACAGATCTT
* * * *
27059361 A--TCCCTAAACAGTAGTGGAGCAGATTGAAGATAGCAAGCCTTAACCCCCTAAGCAGTAGGGTA
1 ATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGTAAGCCTTAACCCCCTAAGCAGTAGGGTA
27059424 ACAGGCTGAAAATTACAGATCTT
66 ACAGGCTGAAAATTACAGATCTT
* * ** * * * *
27059447 ATCTCTCTAAGCAGTAGTGGAGTAGATCGAAGAGGGTGAGCCTTAAGCCCTTAAGTAGTAGGGTA
1 ATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGTAAGCCTTAACCCCCTAAGCAGTAGGGTA
* *
27059512 ATAGGCTGAAAATTACAGATATT
66 ACAGGCTGAAAATTACAGATCTT
* ** *
27059535 ATCTCTCTAAGCAGTAGTGGAGCAGATCGAAGAGGGTAAGCCTTAACCCCCTAAGCAGTAAGGTA
1 ATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGTAAGCCTTAACCCCCTAAGCAGTAGGGTA
27059600 ACAGGCTGAAAATTACAGATCTT
66 ACAGGCTGAAAATTACAGATCTT
* * * * * *
27059623 ATCTCCCTAAGCAGTAGTGGAACAGATCGAAGACGGTGAA-CCTTATCCCTCTAAGCAGTGGGGA
1 ATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGT-AAGCCTTAACCCCCTAAGCAGTAGGGT
* * * *
27059687 AACAAGCTG-AATTTAGAAATCTT
65 AACAGGCTGAAAATTACAGATCTT
27059710 ATCTCCCTAAGCAGTAG
1 ATCTCCCTAAGCAGTAG
27059727 GGAAACAAGT
Statistics
Matches: 480, Mismatches: 49, Indels: 16
0.88 0.09 0.03
Matches are distributed among these distances:
84 148 0.31
85 8 0.02
86 19 0.04
87 90 0.19
88 213 0.44
89 2 0.00
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (88 bp):
ATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGTAAGCCTTAACCCCCTAAGCAGTAGGGTA
ACAGGCTGAAAATTACAGATCTT
Found at i:27059746 original size:131 final size:131
Alignment explanation
Indices: 27059583--27059891 Score: 347
Period size: 131 Copynumber: 2.4 Consensus size: 131
27059573 AGCCTTAACC
* * * *
27059583 CCCTAAGCAGTAAGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAACAG
1 CCCTAAGCAGTAGGGAAACAAGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGCGGAACAG
* * * *
27059648 ATCGAAGACGGTGAACCTTATC-CCTCTAAGCAGTGGGGAAACAAGCTG-AATTTAGAAATCTTA
66 ATCGAAAACAGTGAACCTTATCTCC-CTAAGCAGTGGGG-AACAAGCTGAAAATTACAAATCTTA
27059711 TCT
129 TCT
* * *
27059714 CCCTAAGCAGTAGGGAAACAAGTTGAAAATTACATATCTTATCTCCCTAAGCAGTAGCGGAGCAG
1 CCCTAAGCAGTAGGGAAACAAGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGCGGAACAG
* * * * ** * *
27059779 ATCGAAAACAGTGAGCCTTATCTCCCTGAGTAGTGTGGAGTAGGCTGAAAATTACAGATCTTATC
66 ATCGAAAACAGTGAACCTTATCTCCCTAAGCAGTGGGGAACAAGCTGAAAATTACAAATCTTATC
27059844 T
131 T
* * *
27059845 CCCTAAGCAGTAGTGG-AGC-AGACTGAAGATTACTAGATTTTATCTCC
1 CCCTAAGCAGTAG-GGAAACAAG-CTGAAAATTAC-AGATCTTATCTCC
27059892 TTTAAGTTCC
Statistics
Matches: 149, Mismatches: 24, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
130 8 0.05
131 126 0.85
132 15 0.10
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (131 bp):
CCCTAAGCAGTAGGGAAACAAGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGCGGAACAG
ATCGAAAACAGTGAACCTTATCTCCCTAAGCAGTGGGGAACAAGCTGAAAATTACAAATCTTATC
T
Found at i:27060604 original size:17 final size:17
Alignment explanation
Indices: 27060579--27060620 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
27060569 TGTTTTGCAA
* *
27060579 TTAAGTTTTCGTTATTC
1 TTAATTTTTCATTATTC
27060596 TTAATTTTTCATTATTC
1 TTAATTTTTCATTATTC
27060613 TTAATTTT
1 TTAATTTT
27060621 GGCCCTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.21, C:0.10, G:0.05, T:0.64
Consensus pattern (17 bp):
TTAATTTTTCATTATTC
Found at i:27060899 original size:26 final size:25
Alignment explanation
Indices: 27060870--27060934 Score: 62
Period size: 26 Copynumber: 2.5 Consensus size: 25
27060860 TTTCTATTTA
*
27060870 TATTTATTTTCTTATTCTAATATTAT-
1 TATTTATTTTCTAATT-TAAT-TTATC
*
27060896 TA-TTATTTATCTAATTTTATTTATC
1 TATTTATTT-TCTAATTTAATTTATC
27060921 TATTTATATTTCTA
1 TATTTAT-TTTCTA
27060935 CTACTATTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
24 4 0.12
25 11 0.33
26 16 0.48
27 2 0.06
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.65
Consensus pattern (25 bp):
TATTTATTTTCTAATTTAATTTATC
Found at i:27060908 original size:20 final size:22
Alignment explanation
Indices: 27060885--27060927 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
27060875 ATTTTCTTAT
27060885 TCTAATATTA-TTAT-TATTTA
1 TCTAATATTATTTATCTATTTA
*
27060905 TCTAATTTTATTTATCTATTTA
1 TCTAATATTATTTATCTATTTA
27060927 T
1 T
27060928 ATTTCTACTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 9 0.45
21 4 0.20
22 7 0.35
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (22 bp):
TCTAATATTATTTATCTATTTA
Found at i:27060915 original size:14 final size:13
Alignment explanation
Indices: 27060893--27060931 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
27060883 ATTCTAATAT
27060893 TATTATTATTTATC
1 TATT-TTATTTATC
27060907 TAATTTTATTTATC
1 T-ATTTTATTTATC
27060921 TATTTATATTT
1 TATTT-TATTT
27060932 CTACTACTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 4 0.17
14 16 0.70
15 3 0.13
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (13 bp):
TATTTTATTTATC
Found at i:27060953 original size:23 final size:23
Alignment explanation
Indices: 27060916--27060971 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 23
27060906 CTAATTTTAT
*
27060916 TTATCTATTTATATTTCTACTACTA
1 TTAT-TATTTATATTTATA-TACTA
*
27060941 TTA-TATTTCTATTTATATACTA
1 TTATTATTTATATTTATATACTA
27060963 TTATTATTT
1 TTATTATTT
27060972 TCATTATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 8 0.29
23 17 0.61
25 3 0.11
ACGTcount: A:0.29, C:0.11, G:0.00, T:0.61
Consensus pattern (23 bp):
TTATTATTTATATTTATATACTA
Found at i:27063168 original size:34 final size:34
Alignment explanation
Indices: 27063129--27063201 Score: 137
Period size: 34 Copynumber: 2.1 Consensus size: 34
27063119 TTGATTTGTT
*
27063129 GAATGCTATTTAACTTTATAATATTTCGAAGAAA
1 GAATGCTATTTAACTTTATAATATTCCGAAGAAA
27063163 GAATGCTATTTAACTTTATAATATTCCGAAGAAA
1 GAATGCTATTTAACTTTATAATATTCCGAAGAAA
27063197 GAATG
1 GAATG
27063202 TTAGTATTAC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.41, C:0.10, G:0.14, T:0.36
Consensus pattern (34 bp):
GAATGCTATTTAACTTTATAATATTCCGAAGAAA
Found at i:27068936 original size:6 final size:6
Alignment explanation
Indices: 27068925--27068958 Score: 59
Period size: 6 Copynumber: 5.5 Consensus size: 6
27068915 ATCCTCCTTC
27068925 CCCTCT CCCTCT CCCTCT CCCTCT CCCTTCT CCC
1 CCCTCT CCCTCT CCCTCT CCCTCT CCC-TCT CCC
27068959 ATTTGTTTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 21 0.78
7 6 0.22
ACGTcount: A:0.00, C:0.68, G:0.00, T:0.32
Consensus pattern (6 bp):
CCCTCT
Found at i:27077641 original size:25 final size:25
Alignment explanation
Indices: 27077612--27077659 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
27077602 CAAGCGAGCG
27077612 ATATCAGGAGGCTCAAAAAGAGCCT
1 ATATCAGGAGGCTCAAAAAGAGCCT
* *
27077637 ATATCAGGATGCTCACAAAGAGC
1 ATATCAGGAGGCTCAAAAAGAGC
27077660 TGTGGTAGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.40, C:0.21, G:0.23, T:0.17
Consensus pattern (25 bp):
ATATCAGGAGGCTCAAAAAGAGCCT
Found at i:27085137 original size:15 final size:15
Alignment explanation
Indices: 27085117--27085150 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
27085107 CATTTGTCAG
27085117 ACAATCAT-ACATTT
1 ACAATCATAACATTT
27085131 CACAATCATAACATTT
1 -ACAATCATAACATTT
27085147 ACAA
1 ACAA
27085151 CATTCAATCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.47, C:0.24, G:0.00, T:0.29
Consensus pattern (15 bp):
ACAATCATAACATTT
Found at i:27087542 original size:46 final size:46
Alignment explanation
Indices: 27087490--27087716 Score: 248
Period size: 46 Copynumber: 5.0 Consensus size: 46
27087480 ACTATCTAAA
*
27087490 ATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
27087536 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGGAACTTGAC
1 ATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
27087582 ATGAAA-A-GAATAGGCCATGGTTGAAAGATACCATGACAACATGAC
1 ATGAAATATGTA-AGACCATGGTTGAAAGATACCATGGCAACATGAC
** * *
27087627 GGGAAATGA-ATAAGACCATGGTTGAAAGATACCATGGCAGCATGAC
1 ATGAAAT-ATGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
27087673 A-GAAA-ATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATGAAATAT--GTAAGACCATGGTTGAAAGATACCATGGCAACATG
27087717 TCAAAGATAA
Statistics
Matches: 152, Mismatches: 23, Indels: 12
0.81 0.12 0.06
Matches are distributed among these distances:
43 1 0.01
44 2 0.01
45 38 0.25
46 109 0.72
47 2 0.01
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (46 bp):
ATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:27087673 original size:91 final size:92
Alignment explanation
Indices: 27087500--27087701 Score: 273
Period size: 91 Copynumber: 2.2 Consensus size: 92
27087490 ATGAAATATG
* * * **
27087500 TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGACAACATGACAGGAAATGAATAAGACCATGGTTGAAAGA
* *
27087565 TACCATGGGAACTTGACATGAAAA-GAA
66 TACCATGGCAACATGACA-GAAAATGAA
* *
27087592 T-AGGCCATGGTTGAAAGATACCATGACAACATGACGGGAAATGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGACAACATGACAGGAAATGAATAAGACCATGGTTGAAAGA
* *
27087656 TACCATGGCAGCATGACAGAAAATGAG
66 TACCATGGCAACATGACAGAAAATGAA
*
27087683 TAAGACCATAGTTGAAAGA
1 TAAGACCATGGTTGAAAGA
27087702 CACTATGGCA
Statistics
Matches: 95, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
90 5 0.05
91 74 0.78
92 16 0.17
ACGTcount: A:0.42, C:0.14, G:0.25, T:0.20
Consensus pattern (92 bp):
TAAGACCATGGTTGAAAGATACCATGACAACATGACAGGAAATGAATAAGACCATGGTTGAAAGA
TACCATGGCAACATGACAGAAAATGAA
Found at i:27087730 original size:91 final size:90
Alignment explanation
Indices: 27087502--27087732 Score: 207
Period size: 91 Copynumber: 2.5 Consensus size: 90
27087492 GAAATATGTA
* * * * ***
27087502 AGACCATGGTTGAAAGATACCATGGCAACATGA-TATGAAATGTGTAAGACCATGGTTGAAAGAT
1 AGACCATAGTTGAAAGACACCATGACAACATGACGA--AAATAAATAAGACCATGGTTGAAAGAT
* *
27087566 ACCATGGGAACTTGACATGAAAAGAAT
64 ACCATGGCAACATGACATGAAAAGAAT
* * * * *
27087593 AGGCCATGGTTGAAAGATACCATGACAACATGACGGGAAATGAATAAGACCATGGTTGAAAGATA
1 AGACCATAGTTGAAAGACACCATGACAACATGAC-GAAAATAAATAAGACCATGGTTGAAAGATA
* *
27087658 CCATGGCAGCATGACA-GAAAATGAGT
65 CCATGGCAACATGACATGAAAA-GAAT
* * * *
27087684 AAGACCATAGTTGAAAGACACTATGGCATCATGTC-AAAGATAAATAAGA
1 -AGACCATAGTTGAAAGACACCATGACAACATGACGAAA-ATAAATAAGA
27087733 TTGTGGATGG
Statistics
Matches: 116, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
90 7 0.06
91 82 0.71
92 27 0.23
ACGTcount: A:0.42, C:0.14, G:0.24, T:0.20
Consensus pattern (90 bp):
AGACCATAGTTGAAAGACACCATGACAACATGACGAAAATAAATAAGACCATGGTTGAAAGATAC
CATGGCAACATGACATGAAAAGAAT
Found at i:27090884 original size:11 final size:12
Alignment explanation
Indices: 27090868--27090896 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
27090858 ATGTTAAATT
27090868 ATTAAAAAT-AA
1 ATTAAAAATAAA
27090879 ATTAAAAATAAA
1 ATTAAAAATAAA
27090891 ATTAAA
1 ATTAAA
27090897 TACGGAAGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 9 0.53
12 8 0.47
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (12 bp):
ATTAAAAATAAA
Found at i:27095772 original size:26 final size:26
Alignment explanation
Indices: 27095743--27095850 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
27095733 TGATACAAAT
27095743 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
27095769 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
27095795 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
27095821 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
27095847 TGAT
1 TGAT
27095851 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:27103127 original size:26 final size:26
Alignment explanation
Indices: 27103098--27103361 Score: 411
Period size: 26 Copynumber: 10.2 Consensus size: 26
27103088 TGATACAAAT
27103098 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
27103124 TGATAATAGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
27103150 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
27103176 TGATAATAGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
27103202 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
27103228 TGATAATAGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
27103254 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
27103280 TGATAATAGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
27103306 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
27103332 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
27103358 TGAT
1 TGAT
27103362 GGGCATTTCA
Statistics
Matches: 213, Mismatches: 25, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 213 1.00
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:27103155 original size:52 final size:52
Alignment explanation
Indices: 27103098--27103361 Score: 501
Period size: 52 Copynumber: 5.1 Consensus size: 52
27103088 TGATACAAAT
27103098 TGATAATGGGTTAGGTAAATGTTCCATGATAATAGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATAGATTAGGTAAATATTCCA
27103150 TGATAATGGGTTAGGTAAATGTTCCATGATAATAGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATAGATTAGGTAAATATTCCA
27103202 TGATAATGGGTTAGGTAAATGTTCCATGATAATAGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATAGATTAGGTAAATATTCCA
27103254 TGATAATGGGTTAGGTAAATGTTCCATGATAATAGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATAGATTAGGTAAATATTCCA
* * *
27103306 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATAGATTAGGTAAATATTCCA
27103358 TGAT
1 TGAT
27103362 GGGCATTTCA
Statistics
Matches: 209, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
52 209 1.00
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.35
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATAGATTAGGTAAATATTCCA
Found at i:27107674 original size:17 final size:16
Alignment explanation
Indices: 27107649--27107683 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
27107639 AGTAATAAAA
27107649 ATAATATA-AAACTTT
1 ATAATATATAAACTTT
*
27107664 ATAATATATAATCTTT
1 ATAATATATAAACTTT
27107680 ATAA
1 ATAA
27107684 AAAATATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (16 bp):
ATAATATATAAACTTT
Found at i:27112494 original size:17 final size:18
Alignment explanation
Indices: 27112472--27112507 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
27112462 CATTTTGGGC
27112472 CGTGTGGG-CCACACGGG
1 CGTGTGGGTCCACACGGG
*
27112489 CGTGTGGGTTCACACGGG
1 CGTGTGGGTCCACACGGG
27112507 C
1 C
27112508 TGACAACATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.11, C:0.28, G:0.44, T:0.17
Consensus pattern (18 bp):
CGTGTGGGTCCACACGGG
Found at i:27113707 original size:17 final size:16
Alignment explanation
Indices: 27113684--27113721 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 16
27113674 TAAGTAAAAG
27113684 ATATTT-ATTGATTATT
1 ATATTTAATTGA-TATT
27113700 ACTATTTAATTGATATT
1 A-TATTTAATTGATATT
27113717 ATATT
1 ATATT
27113722 AGTGAATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
16 5 0.25
17 10 0.50
18 5 0.25
ACGTcount: A:0.34, C:0.03, G:0.05, T:0.58
Consensus pattern (16 bp):
ATATTTAATTGATATT
Found at i:27114980 original size:17 final size:17
Alignment explanation
Indices: 27114954--27114995 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
27114944 TTGATTGTAT
*
27114954 ATTGAAATGGAATTGAA
1 ATTGAAATGGAAATGAA
*
27114971 ATTGATATGGAAATGAA
1 ATTGAAATGGAAATGAA
27114988 ATTGAAAT
1 ATTGAAAT
27114996 AAAAAAAAGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.48, C:0.00, G:0.21, T:0.31
Consensus pattern (17 bp):
ATTGAAATGGAAATGAA
Found at i:27114983 original size:23 final size:24
Alignment explanation
Indices: 27114947--27114995 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 24
27114937 TTTTGAATTG
* *
27114947 ATTGTATATTGAAATGGAATTGAA
1 ATTGTATATGGAAATGAAATTGAA
27114971 ATTG-ATATGGAAATGAAATTGAA
1 ATTGTATATGGAAATGAAATTGAA
27114994 AT
1 AT
27114996 AAAAAAAAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 19 0.83
24 4 0.17
ACGTcount: A:0.45, C:0.00, G:0.20, T:0.35
Consensus pattern (24 bp):
ATTGTATATGGAAATGAAATTGAA
Found at i:27115091 original size:13 final size:13
Alignment explanation
Indices: 27115075--27115100 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
27115065 TTTAAGAAGG
27115075 GATTTGGAGATGT
1 GATTTGGAGATGT
27115088 GATTTGGAGATGT
1 GATTTGGAGATGT
27115101 TGATGTTTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.00, G:0.38, T:0.38
Consensus pattern (13 bp):
GATTTGGAGATGT
Found at i:27115185 original size:29 final size:29
Alignment explanation
Indices: 27115153--27115224 Score: 101
Period size: 28 Copynumber: 2.5 Consensus size: 29
27115143 GCTATTCTAT
* *
27115153 TGTGTTTTGGATGGATTATATTATTCTGG
1 TGTGTTTTGGATGGATTATATAATACTGG
*
27115182 TGTGTTTGGGA-GGATTATATAATACTGG
1 TGTGTTTTGGATGGATTATATAATACTGG
*
27115210 TGTGTTTTGGTTGGA
1 TGTGTTTTGGATGGA
27115225 CATTTCTGTT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 24 0.65
29 13 0.35
ACGTcount: A:0.18, C:0.03, G:0.32, T:0.47
Consensus pattern (29 bp):
TGTGTTTTGGATGGATTATATAATACTGG
Found at i:27117482 original size:30 final size:30
Alignment explanation
Indices: 27117446--27117544 Score: 162
Period size: 30 Copynumber: 3.3 Consensus size: 30
27117436 CTAGCCTTTG
*
27117446 CCACCACCAACTCCACTAGCCACAATTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
27117476 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* * *
27117506 TCACTACCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
27117536 CCACCACCA
1 CCACCACCA
27117545 CTTGTACCTA
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 62 1.00
ACGTcount: A:0.27, C:0.48, G:0.06, T:0.18
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:27118104 original size:23 final size:25
Alignment explanation
Indices: 27118011--27118142 Score: 91
Period size: 23 Copynumber: 5.6 Consensus size: 25
27118001 TTTTTTTTGT
* *
27118011 TATTAT-TATATTTC-TTAATATTA
1 TATTATGTATATATCATTAATACTA
* * *
27118034 TATTATATATATACTC-TT-TTAATA
1 TATTATGTATATA-TCATTAATACTA
* * *
27118058 TATTAGGTATAT-TC-TAAATTCTA
1 TATTATGTATATATCATTAATACTA
*
27118081 TATTACGTATATAT-ATT-ATACTA
1 TATTATGTATATATCATTAATACTA
* *
27118104 TTTTATGTATATATCTTTAATACTA
1 TATTATGTATATATCATTAATACTA
*
27118129 TATTATTTATATAT
1 TATTATGTATATAT
27118143 TTTTTTCTAC
Statistics
Matches: 85, Mismatches: 17, Indels: 12
0.75 0.15 0.11
Matches are distributed among these distances:
22 3 0.04
23 37 0.44
24 23 0.27
25 22 0.26
ACGTcount: A:0.36, C:0.07, G:0.03, T:0.55
Consensus pattern (25 bp):
TATTATGTATATATCATTAATACTA
Found at i:27118116 original size:25 final size:25
Alignment explanation
Indices: 27118078--27118227 Score: 85
Period size: 25 Copynumber: 6.0 Consensus size: 25
27118068 ATTCTAAATT
*
27118078 CTATATTACGTATATATA-TT-ATA
1 CTATATTATGTATATATATTTAATA
* *
27118101 CTATTTTATGTATATATCTTTAATA
1 CTATATTATGTATATATATTTAATA
* * *
27118126 CTATATTATTTATATATTTTTTTCTACATG
1 CTATATTATGTATATA---TATT-TA-ATA
* *
27118156 TTATCTTATGTATATAT-TTTAAT-
1 CTATATTATGTATATATATTTAATA
* * * * *
27118179 -TCTATTATGTATGTATTTTTTACA
1 CTATATTATGTATATATATTTAATA
* *
27118203 CTATATTATGTACATATTTTTAATA
1 CTATATTATGTATATATATTTAATA
27118228 TTATCACGTA
Statistics
Matches: 97, Mismatches: 20, Indels: 18
0.72 0.15 0.13
Matches are distributed among these distances:
22 13 0.13
23 19 0.20
24 4 0.04
25 38 0.39
26 2 0.02
27 1 0.01
28 3 0.03
29 2 0.02
30 15 0.15
ACGTcount: A:0.31, C:0.08, G:0.05, T:0.56
Consensus pattern (25 bp):
CTATATTATGTATATATATTTAATA
Found at i:27118230 original size:20 final size:20
Alignment explanation
Indices: 27118205--27118263 Score: 57
Period size: 23 Copynumber: 2.9 Consensus size: 20
27118195 TTTTTACACT
27118205 ATATTATGTACATATTTTTA
1 ATATTATGTACATATTTTTA
** *
27118225 ATATTATCACGTATTTATTTTTT
1 ATATTAT---GTACATATTTTTA
27118248 ATA-TATGTACATATTT
1 ATATTATGTACATATTT
27118264 ATGTAGTATT
Statistics
Matches: 31, Mismatches: 5, Indels: 7
0.72 0.12 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 3 0.10
23 13 0.42
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.56
Consensus pattern (20 bp):
ATATTATGTACATATTTTTA
Found at i:27118402 original size:16 final size:15
Alignment explanation
Indices: 27118378--27118412 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
27118368 TAATTATTAT
27118378 TATTCTAATATTTTGA
1 TATTCTAATATTTT-A
*
27118394 TATTTTAATATTTTA
1 TATTCTAATATTTTA
27118409 TATT
1 TATT
27118413 ATTCACATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (15 bp):
TATTCTAATATTTTA
Found at i:27120084 original size:58 final size:58
Alignment explanation
Indices: 27120015--27120131 Score: 225
Period size: 58 Copynumber: 2.0 Consensus size: 58
27120005 TCATTGAATG
*
27120015 TACATATCACCATAATCATTCACTGAGGCTAAACCCGTATAATCCGCAGTTGCGACAC
1 TACATATCACCATAATCATTCAATGAGGCTAAACCCGTATAATCCGCAGTTGCGACAC
27120073 TACATATCACCATAATCATTCAATGAGGCTAAACCCGTATAATCCGCAGTTGCGACAC
1 TACATATCACCATAATCATTCAATGAGGCTAAACCCGTATAATCCGCAGTTGCGACAC
27120131 T
1 T
27120132 CCAAGTCTGG
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.25
Consensus pattern (58 bp):
TACATATCACCATAATCATTCAATGAGGCTAAACCCGTATAATCCGCAGTTGCGACAC
Found at i:27120903 original size:55 final size:56
Alignment explanation
Indices: 27120795--27120905 Score: 197
Period size: 55 Copynumber: 2.0 Consensus size: 56
27120785 AAGTCTTCTC
27120795 CAGAGTAATGCTCAATGTTAACACTCTTCTTTTTGTGTATCCCTAAGTAATAGTAG
1 CAGAGTAATGCTCAATGTTAACACTCTTCTTTTTGTGTATCCCTAAGTAATAGTAG
* *
27120851 CAGAGTAATGCTCAATGTTAACACT-TTCTTTTTGTGTATCCCTTATTAATAGTAG
1 CAGAGTAATGCTCAATGTTAACACTCTTCTTTTTGTGTATCCCTAAGTAATAGTAG
27120906 GGATTCTTTT
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
55 28 0.53
56 25 0.47
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (56 bp):
CAGAGTAATGCTCAATGTTAACACTCTTCTTTTTGTGTATCCCTAAGTAATAGTAG
Found at i:27125699 original size:73 final size:74
Alignment explanation
Indices: 27125579--27125734 Score: 251
Period size: 73 Copynumber: 2.1 Consensus size: 74
27125569 ATTTCCATTT
*
27125579 TTTCAATTTATGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
1 TTTCAATTTATGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGACACG
*
27125644 CTGAGGTAA
66 CCGAGGTAA
* *
27125653 TTTCAATTTATGCTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGGCACG
1 TTTCAATTTATGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGACACG
*
27125717 CCGAGGTAT
66 CCGAGGTAA
*
27125726 TTTTAATTT
1 TTTCAATTT
27125735 CTGTTTTTAA
Statistics
Matches: 76, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
73 58 0.76
74 18 0.24
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (74 bp):
TTTCAATTTATGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGACACG
CCGAGGTAA
Found at i:27125755 original size:14 final size:13
Alignment explanation
Indices: 27125725--27125755 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
27125715 CGCCGAGGTA
*
27125725 TTTTTAATTTCTG
1 TTTTTAATTTATG
27125738 TTTTTAATTTATG
1 TTTTTAATTTATG
27125751 TTTTT
1 TTTTT
27125756 CAAAAATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.16, C:0.03, G:0.06, T:0.74
Consensus pattern (13 bp):
TTTTTAATTTATG
Found at i:27125802 original size:86 final size:86
Alignment explanation
Indices: 27125657--27126006 Score: 362
Period size: 86 Copynumber: 3.9 Consensus size: 86
27125647 AGGTAATTTC
* * * * *
27125657 AATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGGCACGCCGAG
1 AATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAG
*
27125722 GTATTTTTAATTTCTGTTTTT
66 GTATTTTCAATTTCTGTTTTT
*
27125743 AATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAG
1 AATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAG
27125808 GTATTTTCAATTTCTGTTTTT
66 GTATTTTCAATTTCTGTTTTT
* ** *
27125829 CAATTTTTGCCTTACAAATTCTGCTTTTCAAATCAACTCATATTGTGAGAAGTGAGTTGAGCCTC
1 -AATTTATG--TT-----TT-T-C---AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC
* * *
27125894 AGGACATGCTGAGGTATTTTCAATTTTCGTTTTTTT
53 AGGGCACGCTGAGGTATTTTCAA-TTTC-TGTTTTT
*** * *
27125930 AATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCA-AG-ACGTTGA
1 AATTTATGTTT-TTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGA
*
27125993 GGTAATTTCAATTT
65 GGTATTTTCAATTT
27126007 TTGGTTGTCA
Statistics
Matches: 223, Mismatches: 25, Indels: 32
0.80 0.09 0.11
Matches are distributed among these distances:
86 84 0.38
87 22 0.10
89 38 0.17
93 1 0.00
94 2 0.01
95 1 0.00
96 1 0.00
98 2 0.01
99 55 0.25
100 11 0.05
101 6 0.03
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.37
Consensus pattern (86 bp):
AATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAG
GTATTTTCAATTTCTGTTTTT
Found at i:27125803 original size:159 final size:163
Alignment explanation
Indices: 27125508--27125831 Score: 489
Period size: 159 Copynumber: 2.0 Consensus size: 163
27125498 GTCTTTCAAA
* *
27125508 AAAAATCAACTCATATTACGAGAGGTGAGTTGGCCTCAGGTCACACGCTGAGGTATTTTCAATTT
1 AAAAATCAACTCATATTACGAGAGGTGAGCTGGCCTCAGGTCACACGCCGAGGTATTTTCAATTT
27125573 CCATTTTTTCAATTTATGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
66 CCATTTTTTCAATTTATGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
27125638 GACACGCTGAGGTAATTTCAATTTATGCTTTTC
131 GACACGCTGAGGTAATTTCAATTTATGCTTTTC
* ** *
27125671 AAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTC-GG-GGCACGCCGAGGTATTTTTAATT
1 AAAAATCAACTCATATTACGAGAGGTGAGCTG-GCCTCAGGTCACACGCCGAGGTATTTTCAATT
*
27125734 T-C-TGTTTTT-AATTTATGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
65 TCCAT-TTTTTCAATTTATGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
* * * *
27125795 AGGGCACGCTGAGGTATTTTCAATTTCTGTTTTTC
129 AGGACACGCTGAGGTAATTTCAATTTATGCTTTTC
27125830 AA
1 AA
27125832 TTTTTGCCTT
Statistics
Matches: 148, Mismatches: 11, Indels: 8
0.89 0.07 0.05
Matches are distributed among these distances:
159 71 0.48
160 14 0.09
161 6 0.04
162 20 0.14
163 32 0.22
164 5 0.03
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (163 bp):
AAAAATCAACTCATATTACGAGAGGTGAGCTGGCCTCAGGTCACACGCCGAGGTATTTTCAATTT
CCATTTTTTCAATTTATGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
GACACGCTGAGGTAATTTCAATTTATGCTTTTC
Found at i:27126207 original size:75 final size:75
Alignment explanation
Indices: 27125938--27126241 Score: 337
Period size: 77 Copynumber: 4.0 Consensus size: 75
27125928 TTAATTTATG
* * * ** *
27125938 TTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC--AAGACGTTGAGGTAATTT
1 TTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACACTGAGGTATTTT
* * *
27126001 CAATTTTTGGT
65 CAAATTCTGTT
* * * * *
27126012 TGTC--AAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATATTTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACACTGAGGTATTTTC
*
27126075 AAATTCTATT
66 AAATTCTGTT
27126085 TGTATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACACTGAGGTATTT
1 T-T-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACACTGAGGTATTT
*
27126150 TCAATTTCTGTT
64 TCAAATTCTGTT
* * * * **
27126162 TTTCAAAAGAATCAACTCATATTGGGAGAGGTGAGTTGAGTCTCGGGCCACACGTCGAGGTCCTT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACAC-T-GAGGTATTT
27126227 TCAAATTCTGTT
64 TCAAATTCTGTT
27126239 TTT
1 TTT
27126242 AATTTCTTTT
Statistics
Matches: 196, Mismatches: 26, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
71 36 0.18
73 21 0.11
74 3 0.02
75 49 0.25
76 2 0.01
77 85 0.43
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (75 bp):
TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACACTGAGGTATTTTC
AAATTCTGTT
Found at i:27126457 original size:71 final size:71
Alignment explanation
Indices: 27126359--27126490 Score: 237
Period size: 71 Copynumber: 1.9 Consensus size: 71
27126349 GTTTTAATTC
*
27126359 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTT
27126424 ATCATA
66 ATCATA
* *
27126430 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACCCGTTGAGGTATTTTCA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCA
27126491 TTTTCTGCTC
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
71 58 1.00
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (71 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTT
ATCATA
Found at i:27126645 original size:161 final size:152
Alignment explanation
Indices: 27126266--27126728 Score: 478
Period size: 161 Copynumber: 3.0 Consensus size: 152
27126256 AATTTATGTG
* * * * *
27126266 TTTCAAAAAAATCAGCTCATATTGCGAGAGGTCAGTTGAACCTCAAGACGCTGAGGTGTTTTCCA
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACGTTGAGGTATTTT-CA
27126331 TTTCTATTTTCAATTTCTGTTTTAATTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
65 --T-T-TTTTCAATTTCTG-TTT--TTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
*
27126396 TCAAGTCACATTGAGGTATTTTCAATTTAT
123 TCAAGTCACACTGAGGTATTTTCAATTTAT
**
27126426 CAT-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACCCGTTGAGGTATTTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA--CGTTGAGGTATTTTC
*
27126490 ATTTTCTGCTCAATTTATGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
64 ATTTT-T--TCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
* * *
27126554 GGTCACACGCTGAGGTGTTTTCAACTTCTGTT
126 AGTCACA--CTGAGGTATTTTCAA-TT-T-AT
* * *
27126586 TTTCAAAAAAATCAACTCATGTTGTGAGAGGTGAGTTGAGCCTCAGGACTAGTTGAGGTA-----
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC--GTTGAGGTATTTTC
** ** *
27126646 A--TTTT-AATTTCTGTTCATCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGG
64 ATTTTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGT
* *
27126708 CACGCTGAGGTATTTTTAATT
129 CACACTGAGGTATTTTCAATT
27126729 AATGTTTTTT
Statistics
Matches: 264, Mismatches: 25, Indels: 40
0.80 0.08 0.12
Matches are distributed among these distances:
148 2 0.01
149 13 0.05
150 11 0.04
151 44 0.17
153 1 0.00
154 2 0.01
155 45 0.17
156 6 0.02
157 15 0.06
158 6 0.02
159 52 0.20
160 5 0.02
161 62 0.23
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.34
Consensus pattern (152 bp):
TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACGTTGAGGTATTTTCAT
TTTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCA
CACTGAGGTATTTTCAATTTAT
Found at i:27126719 original size:235 final size:236
Alignment explanation
Indices: 27126337--27126790 Score: 582
Period size: 235 Copynumber: 1.9 Consensus size: 236
27126327 TCCATTTCTA
*
27126337 TTTTCAATTTCTGTTTTAATTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGT
1 TTTTCAACTTCTGTTTT-ATTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGT
27126402 CACATTGAGGTATTTTCAATTTATCATAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
65 CACATTGAGGTATTTTCAATTTATCATAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* * * **
27126467 TCAAGACCCGTTGAGGTA-TTTTCATT-T-TCTGCTCAATTTATGTTTTTCAAAAATCAACTCAT
130 TCAAGACACGCTGAGGTATTTTTAATTATGTCTGCTCAATTTATACTTTTCAAAAATCAACTCAT
* **
27126529 ATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTG
195 ATTACGAGAAATGAGTTGAGCCTCAGGTCACACGCTGAGGTG
* *
27126571 TTTTCAACTTCTG-TTT-TTCAAAAAAATCAACTCATGTTGTGAGAGGTGAGTTGAGCCTC-AG-
1 TTTTCAACTTCTGTTTTATTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGT
* * *
27126632 GACTAGTTGAGGTAATTTT-AATTTCTGTTCATCAAAAAATCAACTCATATTGCGAGAGGTGAGT
65 CAC-A-TTGAGGT-ATTTTCAA-TT-T-ATCATAAAAAAATCAACTCATATTGCGAGAGGTGAGT
** * * ** *
27126696 TGAGCCTCGGGGCACGCTGAGGTATTTTTAATTAATGTTTTTTCAATTTATACTTTTCAAGAATC
124 TGAGCCTCAAGACACGCTGAGGTATTTTTAATT-ATGTCTGCTCAATTTATACTTTTCAAAAATC
27126761 AACTCATATTACGAGAAATGAGTTGAGCCT
188 AACTCATATTACGAGAAATGAGTTGAGCCT
27126791 TGGGTCACGT
Statistics
Matches: 188, Mismatches: 21, Indels: 17
0.83 0.09 0.08
Matches are distributed among these distances:
230 2 0.01
231 6 0.03
232 46 0.24
233 10 0.05
234 13 0.07
235 54 0.29
236 7 0.04
238 1 0.01
239 49 0.26
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.35
Consensus pattern (236 bp):
TTTTCAACTTCTGTTTTATTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTC
ACATTGAGGTATTTTCAATTTATCATAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
CAAGACACGCTGAGGTATTTTTAATTATGTCTGCTCAATTTATACTTTTCAAAAATCAACTCATA
TTACGAGAAATGAGTTGAGCCTCAGGTCACACGCTGAGGTG
Found at i:27126725 original size:74 final size:75
Alignment explanation
Indices: 27126515--27126728 Score: 279
Period size: 74 Copynumber: 2.8 Consensus size: 75
27126505 TATGTTTTTC
* * * *
27126515 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTGTTTTCAACT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GG-GACACGCTGAGGTATTTTTAATT
**
27126580 TCTGTTTTTCAA
64 TCTGTTCATCAA
* * * * *
27126592 AAAAATCAACTCATGTTGTGAGAGGTGAGTTGAGCCTCAGGACTA-GTTGAGGTAATTTTAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGAC-ACGCTGAGGTATTTTTAATTT
27126656 CTGTTCATC-A
65 CTGTTCATCAA
*
27126666 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAATT
27126729 AATGTTTTTT
Statistics
Matches: 118, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
73 1 0.01
74 56 0.47
75 23 0.19
76 2 0.02
77 36 0.31
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (75 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAATTTC
TGTTCATCAA
Found at i:27126826 original size:239 final size:232
Alignment explanation
Indices: 27126359--27126831 Score: 562
Period size: 239 Copynumber: 2.0 Consensus size: 232
27126349 GTTTTAATTC
27126359 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATTTTCAATTT
* *
27126424 ATCATAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACCCGTTGAGGTATTTT
66 ATCATAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTT
* ** * **
27126489 CATTTTCTGCTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
131 AATTTTCTGCTCAATTTATACTTTTCAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCA
* * *
27126554 GGTCACACGCTGAGGTGTTTTCAACTTCTGTTTTTCA
196 GGTCACACGCTGAGGTATTTTCAACATCTGTTTTACA
* * *
27126591 AAAAAATCAACTCATGTTGTGAGAGGTGAGTTGAGCCTC-AG-GACTAGTTGAGGTAATTTT-AA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCAC-A-TTGAGGT-ATTTTCAA
* * ** *
27126653 TTTCTGTTCATCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGG
63 -TT-T-ATCATAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGG
* ** *
27126718 TATTTTTAATTAATGTTTTTTCAATTTATACTTTTCAAGAATCAACTCATATTACGAGAAATGAG
125 TA-TTTTAATT--T-TCTGCTCAATTTATACTTTTCAAAAATCAACTCATATTACGAGAAATGAG
**
27126783 TTGAGCCTTGGGTCACGTAC-C-GAGGTATTTTCGAA-ATCTGTTTTACA
186 TTGAGCCTCAGGTCAC--ACGCTGAGGTATTTTC-AACATCTGTTTTACA
27126830 AA
1 AA
27126832 TTTTGTTTTA
Statistics
Matches: 203, Mismatches: 25, Indels: 19
0.82 0.10 0.08
Matches are distributed among these distances:
230 2 0.01
231 3 0.01
232 46 0.23
233 7 0.03
234 1 0.00
235 54 0.27
236 7 0.03
238 1 0.00
239 77 0.38
240 3 0.01
241 2 0.01
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (232 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATTTTCAATTT
ATCATAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTT
AATTTTCTGCTCAATTTATACTTTTCAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCA
GGTCACACGCTGAGGTATTTTCAACATCTGTTTTACA
Found at i:27126870 original size:87 final size:89
Alignment explanation
Indices: 27126666--27126963 Score: 274
Period size: 88 Copynumber: 3.4 Consensus size: 89
27126656 CTGTTCATCA
* * * * * *
27126666 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACG-CTGAGGTATTTTTAATTA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGGTCACGTCCGAGGTATTTTGAAATA
*
27126730 ATGTTTTTTCAATTTATACTTTTC
66 ATGTTTTTACAATTTATACTTTTC
* * *
27126754 AAGAATCAACTCATATTACGAGAAATGAGTTGAGCCTTGGGTCACGTACCGAGGTATTTTCGAAA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGGTCACGT-CCGAGGTATTTT-GAAA
* *
27126819 T-CTG-TTTTACAAATTT-T-GTTTT-
64 TAATGTTTTTAC-AATTTATACTTTTC
* * *
27126841 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTT-AAAT
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGGTCACGT-CCGAGGTATTTTGAAA-
* * * *
27126905 TTATGTTTTT--AATGTCTAGTTTT-
64 TAATGTTTTTACAATTTATACTTTTC
* * *
27126928 AAAGAGTCAATTCATATTGCGAGAAATGAGTTGAGC
1 AAA-AATCAACTCATATTGCGAGAAGTGAGTTGAGC
27126964 TCAGGATCAC
Statistics
Matches: 176, Mismatches: 24, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
85 7 0.04
86 2 0.01
87 63 0.36
88 77 0.44
89 6 0.03
90 18 0.10
91 3 0.02
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (89 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGGTCACGTCCGAGGTATTTTGAAATA
ATGTTTTTACAATTTATACTTTTC
Found at i:27127653 original size:30 final size:30
Alignment explanation
Indices: 27127617--27127715 Score: 162
Period size: 30 Copynumber: 3.3 Consensus size: 30
27127607 CTAGCCTTTG
* *
27127617 CCACCACCAACTCCACTAGCTACAATTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
27127647 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
27127677 CCACTACCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
27127707 CCACCACCA
1 CCACCACCA
27127716 CTTGTACCTA
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 63 1.00
ACGTcount: A:0.27, C:0.48, G:0.06, T:0.18
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:27127680 original size:18 final size:18
Alignment explanation
Indices: 27127657--27127710 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
27127647 CCACCACCAA
27127657 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
*
27127675 CTCCACT----AC-C-TA
1 CTCCACTAGCCACACTTG
27127687 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
27127705 CTCCAC
1 CTCCAC
27127711 CACCACTTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 8 0.29
13 1 0.04
14 2 0.07
16 2 0.07
17 1 0.04
18 14 0.50
ACGTcount: A:0.22, C:0.48, G:0.07, T:0.22
Consensus pattern (18 bp):
CTCCACTAGCCACACTTG
Found at i:27128224 original size:23 final size:23
Alignment explanation
Indices: 27128187--27128316 Score: 79
Period size: 25 Copynumber: 5.5 Consensus size: 23
27128177 TTTTTTTTGT
27128187 TATTAT-TATATTTCTTAATATTA
1 TATTATATATA-TTCTTAATATTA
* *
27128210 TATTATATATATTCTT-TTAATA
1 TATTATATATATTCTTAATATTA
** *
27128232 TATTAGGTATATTCTAAAT-TCTA
1 TATTATATATATTCTTAATAT-TA
* *
27128255 TATTACGTATATATATATT-ATACTA
1 TATTA--TATATAT-TCTTAATATTA
* *
27128280 TTTTATGTATATATCTTTAATATTA
1 TATTATATATAT-TC-TTAATATTA
*
27128305 TATTATTTATAT
1 TATTATATATAT
27128317 ATATATATTT
Statistics
Matches: 80, Mismatches: 18, Indels: 16
0.70 0.16 0.14
Matches are distributed among these distances:
22 17 0.21
23 27 0.34
24 6 0.08
25 28 0.35
26 2 0.03
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.56
Consensus pattern (23 bp):
TATTATATATATTCTTAATATTA
Found at i:27128280 original size:25 final size:26
Alignment explanation
Indices: 27128252--27128322 Score: 83
Period size: 25 Copynumber: 2.8 Consensus size: 26
27128242 ATTCTAAATT
*
27128252 CTATATTACGTATATATATATT-ATA
1 CTATATTATGTATATATATATTAATA
* *
27128277 CTATTTTATGTATATATCT-TTAATA
1 CTATATTATGTATATATATATTAATA
* *
27128302 TTATATTATTTATATATATAT
1 CTATATTATGTATATATATAT
27128323 ATTTTTTTAC
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
24 2 0.05
25 34 0.92
26 1 0.03
ACGTcount: A:0.37, C:0.06, G:0.03, T:0.55
Consensus pattern (26 bp):
CTATATTATGTATATATATATTAATA
Found at i:27128369 original size:22 final size:25
Alignment explanation
Indices: 27128341--27128394 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
27128331 ACATGTTATC
27128341 TTATGTATATA-TCTT-A-ACTATA
1 TTATGTATATATTCTTAACACTATA
* *
27128363 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATATTCTTAACACTATA
27128388 TTATGTA
1 TTATGTA
27128395 CATTTTTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 10 0.37
23 3 0.11
24 1 0.04
25 13 0.48
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.52
Consensus pattern (25 bp):
TTATGTATATATTCTTAACACTATA
Found at i:27128399 original size:23 final size:24
Alignment explanation
Indices: 27128357--27128402 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
27128347 ATATATCTTA
*
27128357 ACTATATTATGTATGTATTTTTAAC
1 ACTATATTATGTA-GCATTTTTAAC
27128382 ACTATATTATGTA-CATTTTTA
1 ACTATATTATGTAGCATTTTTA
27128403 TTTCTATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 7 0.35
25 13 0.65
ACGTcount: A:0.33, C:0.09, G:0.07, T:0.52
Consensus pattern (24 bp):
ACTATATTATGTAGCATTTTTAAC
Found at i:27128466 original size:16 final size:15
Alignment explanation
Indices: 27128442--27128476 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
27128432 TAATTATTAT
27128442 TATTCTAATATTTTGA
1 TATTCTAATATTTT-A
*
27128458 TATTTTAATATTTTA
1 TATTCTAATATTTTA
27128473 TATT
1 TATT
27128477 ATTCACATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (15 bp):
TATTCTAATATTTTA
Found at i:27129619 original size:28 final size:28
Alignment explanation
Indices: 27129566--27129649 Score: 123
Period size: 28 Copynumber: 3.0 Consensus size: 28
27129556 CATTCTGTGC
*
27129566 TATTATGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
*
27129595 TATTCTGGTGTGTTTGGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
* *
27129623 AATACTGGTGTGTTTTGGAGGATTATA
1 TATTCTGGTGTGTTTTGGAGGATTATA
27129650 CTGGTTTGTT
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 33 0.66
29 17 0.34
ACGTcount: A:0.21, C:0.02, G:0.30, T:0.46
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Found at i:27135925 original size:17 final size:17
Alignment explanation
Indices: 27135903--27135936 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
27135893 AAGTAAAAGA
27135903 TATTT-ATTGATTATTAT
1 TATTTAATTGA-TATTAT
27135920 TATTTAATTGATATTAT
1 TATTTAATTGATATTAT
27135937 ATTAGTGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (17 bp):
TATTTAATTGATATTAT
Found at i:27137413 original size:29 final size:28
Alignment explanation
Indices: 27137374--27137453 Score: 81
Period size: 28 Copynumber: 2.8 Consensus size: 28
27137364 CATTCTGTGC
27137374 TATTCTGGTGTATTTTGGATGGATTATAT
1 TATTCTGGTGT-TTTTGGATGGATTATAT
* *
27137403 TATTCTAGTGTGTTTGAGA-GGATTATAT
1 TATTCTGGTGTTTTTG-GATGGATTATAT
* * *
27137431 AATACTGGTGTGTTTTGGTTGGA
1 TATTCTGGTGT-TTTTGGATGGA
27137454 CATTTCTGTT
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
28 22 0.54
29 19 0.46
ACGTcount: A:0.21, C:0.04, G:0.28, T:0.47
Consensus pattern (28 bp):
TATTCTGGTGTTTTTGGATGGATTATAT
Found at i:27138628 original size:24 final size:24
Alignment explanation
Indices: 27138596--27138646 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
27138586 TAGCTTTAGG
27138596 AAAACTTGAGTTTTCAAAAGAACC
1 AAAACTTGAGTTTTCAAAAGAACC
*
27138620 AAAACTTGAGTTTTGAAAAGAACC
1 AAAACTTGAGTTTTCAAAAGAACC
27138644 AAA
1 AAA
27138647 CGTTTTAACA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.24
Consensus pattern (24 bp):
AAAACTTGAGTTTTCAAAAGAACC
Found at i:27138763 original size:16 final size:17
Alignment explanation
Indices: 27138731--27138763 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
27138721 TCGAATGATT
27138731 AATTAACAAGATAATAA
1 AATTAACAAGATAATAA
*
27138748 AATTAATAAG-TAATAA
1 AATTAACAAGATAATAA
27138764 TGAAAATATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.64, C:0.03, G:0.06, T:0.27
Consensus pattern (17 bp):
AATTAACAAGATAATAA
Found at i:27139670 original size:13 final size:13
Alignment explanation
Indices: 27139652--27139688 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
27139642 ATGGTCTATA
27139652 ATTTTATGAAATG
1 ATTTTATGAAATG
27139665 ATTTTATGAAATG
1 ATTTTATGAAATG
*
27139678 ATTTCATGAAA
1 ATTTTATGAAA
27139689 ATTTTGTTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.41, C:0.03, G:0.14, T:0.43
Consensus pattern (13 bp):
ATTTTATGAAATG
Found at i:27140883 original size:48 final size:48
Alignment explanation
Indices: 27140787--27140891 Score: 113
Period size: 48 Copynumber: 2.2 Consensus size: 48
27140777 ACAACATGTG
** *
27140787 AGTATTGAGATCCCATATAAGAACAGATCTGGGATATGGCATCGGCATC
1 AGTA-TGAGATCCCATATAAGAACAGATCTGGGATATAACATCAGCATC
* * * * *
27140836 AGTATGAGATCCCATGTAAGACCATATTTGGGATATAACATTAGCATC
1 AGTATGAGATCCCATATAAGAACAGATCTGGGATATAACATCAGCATC
27140884 -GATATGAG
1 AG-TATGAG
27140892 GTCTCGTATA
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
47 1 0.02
48 42 0.89
49 4 0.09
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (48 bp):
AGTATGAGATCCCATATAAGAACAGATCTGGGATATAACATCAGCATC
Found at i:27140993 original size:42 final size:42
Alignment explanation
Indices: 27140937--27141186 Score: 170
Period size: 42 Copynumber: 5.9 Consensus size: 42
27140927 GCACCGTTAT
* * * *
27140937 GAGACTTCATGTAAGACCATGTCTGGGACATGTCTTTGATAT
1 GAGATTTCATGTAAGACCATGTCTGGGACATGGCATTGATAC
* *
27140979 GATATTTCATGTAAGACCGTGTCTGGGACATGGCATTGATAC
1 GAGATTTCATGTAAGACCATGTCTGGGACATGGCATTGATAC
* * * * *
27141021 GAGATTTCGTGTAAGACCATAG-CTGGG-CTATTAGCATCGGTAT
1 GAGATTTCATGTAAGACCAT-GTCTGGGAC-A-TGGCATTGATAC
* * * * * *
27141064 GATATTACGTGTAAGACCATGTCTAGGACATGGCA-TCATTAT
1 GAGATTTCATGTAAGACCATGTCTGGGACATGGCATTGA-TAC
* *
27141106 GAGATTTCGTGTAAGACCATAG-CTGGG-CTATTGGC-TTCGATAT
1 GAGATTTCATGTAAGACCAT-GTCTGGGAC-A-TGGCATT-GATAC
* * * * *
27141149 AAGATTACATGTAAGACCATATCCGGGAAATGGCATTG
1 GAGATTTCATGTAAGACCATGTCTGGGACATGGCATTG
27141187 TACAACATAT
Statistics
Matches: 164, Mismatches: 30, Indels: 28
0.74 0.14 0.13
Matches are distributed among these distances:
41 2 0.01
42 95 0.58
43 65 0.40
44 2 0.01
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.30
Consensus pattern (42 bp):
GAGATTTCATGTAAGACCATGTCTGGGACATGGCATTGATAC
Found at i:27141080 original size:43 final size:43
Alignment explanation
Indices: 27141009--27141169 Score: 168
Period size: 43 Copynumber: 3.8 Consensus size: 43
27140999 GTCTGGGACA
* * *
27141009 TGGCATTGATACGAGATTTCGTGTAAGACCATAGCTGGGCTAT
1 TGGCATCGATATGAGATTACGTGTAAGACCATAGCTGGGCTAT
* * * *
27141052 TAGCATCGGTATGATATTACGTGTAAGACCAT-GTCTAGGAC-A-
1 TGGCATCGATATGAGATTACGTGTAAGACCATAG-CT-GGGCTAT
*
27141094 TGGCATC-ATTATGAGATTTCGTGTAAGACCATAGCTGGGCTAT
1 TGGCATCGA-TATGAGATTACGTGTAAGACCATAGCTGGGCTAT
* * *
27141137 TGGCTTCGATATAAGATTACATGTAAGACCATA
1 TGGCATCGATATGAGATTACGTGTAAGACCATA
27141170 TCCGGGAAAT
Statistics
Matches: 95, Mismatches: 16, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
41 3 0.03
42 31 0.33
43 57 0.60
44 4 0.04
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (43 bp):
TGGCATCGATATGAGATTACGTGTAAGACCATAGCTGGGCTAT
Found at i:27141087 original size:85 final size:86
Alignment explanation
Indices: 27140974--27141186 Score: 286
Period size: 85 Copynumber: 2.5 Consensus size: 86
27140964 ACATGTCTTT
* *
27140974 GATATGATATTTCATGTAAGACCGTGTCTGGGACATGGCATTGA-TACGAGATTTCGTGTAAGAC
1 GATATGATATTACATGTAAGACCATGTCTGGGACATGGCATTGATTACGAGATTTCGTGTAAGAC
27141038 CATAGCTGGGCTATTAGCATC
66 CATAGCTGGGCTATTAGCATC
* * * * *
27141059 GGTATGATATTACGTGTAAGACCATGTCTAGGACATGGCA-TCATTATGAGATTTCGTGTAAGAC
1 GATATGATATTACATGTAAGACCATGTCTGGGACATGGCATTGATTACGAGATTTCGTGTAAGAC
* *
27141123 CATAGCTGGGCTATTGGCTTC
66 CATAGCTGGGCTATTAGCATC
* * * * *
27141144 GATATAAGATTACATGTAAGACCATATCCGGGAAATGGCATTG
1 GATATGATATTACATGTAAGACCATGTCTGGGACATGGCATTG
27141187 TACAACATAT
Statistics
Matches: 108, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
84 2 0.02
85 105 0.97
86 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (86 bp):
GATATGATATTACATGTAAGACCATGTCTGGGACATGGCATTGATTACGAGATTTCGTGTAAGAC
CATAGCTGGGCTATTAGCATC
Found at i:27143667 original size:19 final size:19
Alignment explanation
Indices: 27143643--27143680 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
27143633 ACTTATCTTC
*
27143643 TTTTACTCTTCTCTTCTCT
1 TTTTACTCATCTCTTCTCT
*
27143662 TTTTACTCATCTTTTCTCT
1 TTTTACTCATCTCTTCTCT
27143681 CAATTAAAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.08, C:0.29, G:0.00, T:0.63
Consensus pattern (19 bp):
TTTTACTCATCTCTTCTCT
Found at i:27146903 original size:141 final size:141
Alignment explanation
Indices: 27146649--27146931 Score: 566
Period size: 141 Copynumber: 2.0 Consensus size: 141
27146639 CAAGCTTATT
27146649 ATATTTAAGTGTGTGTTGTGAGTTGTATGCGTGCTTGATAAATGTTTCTTTACCTTGGTAATTAG
1 ATATTTAAGTGTGTGTTGTGAGTTGTATGCGTGCTTGATAAATGTTTCTTTACCTTGGTAATTAG
27146714 ATGTTCTGGGTCGTACTAAGAATTATTTTTAATCAGAGTGCGCAGCAGTAGCATAGTGCAATAGT
66 ATGTTCTGGGTCGTACTAAGAATTATTTTTAATCAGAGTGCGCAGCAGTAGCATAGTGCAATAGT
27146779 CGGTATTAGAC
131 CGGTATTAGAC
27146790 ATATTTAAGTGTGTGTTGTGAGTTGTATGCGTGCTTGATAAATGTTTCTTTACCTTGGTAATTAG
1 ATATTTAAGTGTGTGTTGTGAGTTGTATGCGTGCTTGATAAATGTTTCTTTACCTTGGTAATTAG
27146855 ATGTTCTGGGTCGTACTAAGAATTATTTTTAATCAGAGTGCGCAGCAGTAGCATAGTGCAATAGT
66 ATGTTCTGGGTCGTACTAAGAATTATTTTTAATCAGAGTGCGCAGCAGTAGCATAGTGCAATAGT
27146920 CGGTATTAGAC
131 CGGTATTAGAC
27146931 A
1 A
27146932 ACTAATAGCT
Statistics
Matches: 142, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
141 142 1.00
ACGTcount: A:0.26, C:0.11, G:0.25, T:0.38
Consensus pattern (141 bp):
ATATTTAAGTGTGTGTTGTGAGTTGTATGCGTGCTTGATAAATGTTTCTTTACCTTGGTAATTAG
ATGTTCTGGGTCGTACTAAGAATTATTTTTAATCAGAGTGCGCAGCAGTAGCATAGTGCAATAGT
CGGTATTAGAC
Found at i:27149164 original size:26 final size:26
Alignment explanation
Indices: 27149135--27149242 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
27149125 TGGTACAAAT
*
27149135 TGATAATGGGTTATGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
27149161 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
27149187 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
27149213 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
27149239 TGAT
1 TGAT
27149243 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.32, C:0.07, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:27150912 original size:27 final size:28
Alignment explanation
Indices: 27150842--27150912 Score: 103
Period size: 27 Copynumber: 2.6 Consensus size: 28
27150832 GGAAGCGTCT
*
27150842 TGGTGGCTATGCCACA-ATTATCTGATC
1 TGGTGGCTCTGCCACATATTATCTGATC
27150869 TGGTGGCTCTGCCACATA-TATCTG-TCC
1 TGGTGGCTCTGCCACATATTATCTGAT-C
27150896 TGGTGGCTCTGCCACAT
1 TGGTGGCTCTGCCACAT
27150913 TTGGTGGCTC
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
26 1 0.02
27 39 0.95
28 1 0.02
ACGTcount: A:0.17, C:0.27, G:0.24, T:0.32
Consensus pattern (28 bp):
TGGTGGCTCTGCCACATATTATCTGATC
Found at i:27150919 original size:18 final size:18
Alignment explanation
Indices: 27150895--27150947 Score: 88
Period size: 18 Copynumber: 2.9 Consensus size: 18
27150885 TATATCTGTC
*
27150895 CTGGTGGCTCTGCCACAT
1 CTGGTGGCTCTACCACAT
*
27150913 TTGGTGGCTCTACCACAT
1 CTGGTGGCTCTACCACAT
27150931 CTGGTGGCTCTACCACA
1 CTGGTGGCTCTACCACA
27150948 ATATCTGTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.15, C:0.32, G:0.25, T:0.28
Consensus pattern (18 bp):
CTGGTGGCTCTACCACAT
Found at i:27156495 original size:18 final size:18
Alignment explanation
Indices: 27156472--27156508 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
27156462 CAATTATCTG
27156472 ATCTGGTGGCTCTGCCAC
1 ATCTGGTGGCTCTGCCAC
27156490 ATCTGGTGGCTCTGCCAC
1 ATCTGGTGGCTCTGCCAC
27156508 A
1 A
27156509 ATATCTGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.14, C:0.32, G:0.27, T:0.27
Consensus pattern (18 bp):
ATCTGGTGGCTCTGCCAC
Found at i:27156667 original size:18 final size:18
Alignment explanation
Indices: 27156643--27156695 Score: 88
Period size: 18 Copynumber: 2.9 Consensus size: 18
27156633 TATATCTGTC
*
27156643 CTGGTGGCTCTGCCACAT
1 CTGGTGGCTCTACCACAT
*
27156661 TTGGTGGCTCTACCACAT
1 CTGGTGGCTCTACCACAT
27156679 CTGGTGGCTCTACCACA
1 CTGGTGGCTCTACCACA
27156696 ATATCTGTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.15, C:0.32, G:0.25, T:0.28
Consensus pattern (18 bp):
CTGGTGGCTCTACCACAT
Found at i:27160755 original size:164 final size:164
Alignment explanation
Indices: 27160484--27160811 Score: 629
Period size: 164 Copynumber: 2.0 Consensus size: 164
27160474 TTTTGTTCCG
27160484 TAAGCAAAAGGGAGTGAAATTATGAAATAGGACCTATGTGAAAATGTTTGAAAATGCTATAGGCT
1 TAAGCAAAAGGGAGTGAAATTATGAAATAGGACCTATGTGAAAATGTTTGAAAATGCTATAGGCT
27160549 AAATTGAAGTGGCCAAATAAATAAAAGTGCAAAATAGGAGGATTTGCATGACAAACCTCCCATTT
66 AAATTGAAGTGGCCAAATAAATAAAAGTGCAAAATAGGAGGATTTGCATGACAAACCTCCCATTT
*
27160614 TACATGAAGTGGCCGGCCACCATGTTGTTGTAGA
131 TACATGAAGTGGCCAGCCACCATGTTGTTGTAGA
27160648 TAAGCAAAAGGGAGTGAAATTATGAAATAGGACCTATGTGAAAATGTTTGAAAATGCTATAGGCT
1 TAAGCAAAAGGGAGTGAAATTATGAAATAGGACCTATGTGAAAATGTTTGAAAATGCTATAGGCT
*
27160713 AAATTGAAGTGGCCAAATAAATAAGAGTGCAAAATAGGAGGATTTGCATGACAAACCTCCCATTT
66 AAATTGAAGTGGCCAAATAAATAAAAGTGCAAAATAGGAGGATTTGCATGACAAACCTCCCATTT
*
27160778 TACATGAAGTGGCCAGCCATCATGTTGTTGTAGA
131 TACATGAAGTGGCCAGCCACCATGTTGTTGTAGA
27160812 CAATATGAGC
Statistics
Matches: 161, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
164 161 1.00
ACGTcount: A:0.38, C:0.13, G:0.23, T:0.25
Consensus pattern (164 bp):
TAAGCAAAAGGGAGTGAAATTATGAAATAGGACCTATGTGAAAATGTTTGAAAATGCTATAGGCT
AAATTGAAGTGGCCAAATAAATAAAAGTGCAAAATAGGAGGATTTGCATGACAAACCTCCCATTT
TACATGAAGTGGCCAGCCACCATGTTGTTGTAGA
Found at i:27160880 original size:26 final size:26
Alignment explanation
Indices: 27160851--27160958 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
27160841 TGGTACAAAT
*
27160851 TGATAATGGGTTATGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
27160877 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
27160903 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
27160929 TGATAATGGTTTAGGTAAATGCTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
27160955 TGAT
1 TGAT
27160959 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.08, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:27162597 original size:27 final size:27
Alignment explanation
Indices: 27162557--27162654 Score: 119
Period size: 27 Copynumber: 3.6 Consensus size: 27
27162547 AGGAAGCGTC
*
27162557 CTGGTGACTATGCCACAATTATCTGAT
1 CTGGTGGCTATGCCACAATTATCTGAT
*
27162584 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTATGCCACAAT-TATCTGAT
* *
27162610 CCTGATGGCTATGCGACAATTATCTGAT
1 -CTGGTGGCTATGCCACAATTATCTGAT
*
27162638 CTGGTGGCTCTGCCACA
1 CTGGTGGCTATGCCACA
27162655 TCTGGTGGCT
Statistics
Matches: 59, Mismatches: 8, Indels: 8
0.79 0.11 0.11
Matches are distributed among these distances:
26 3 0.05
27 53 0.90
28 3 0.05
ACGTcount: A:0.20, C:0.26, G:0.22, T:0.32
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAATTATCTGAT
Found at i:27163102 original size:48 final size:48
Alignment explanation
Indices: 27163031--27163127 Score: 185
Period size: 48 Copynumber: 2.0 Consensus size: 48
27163021 TTGGAGTTGT
*
27163031 GAGGGAATTCAGAGTGGCCACCCGTTTTGAAAGTTTGATTTTCTTCTG
1 GAGGGAATTCAGAGTGGCCACCCGTTCTGAAAGTTTGATTTTCTTCTG
27163079 GAGGGAATTCAGAGTGGCCACCCGTTCTGAAAGTTTGATTTTCTTCTG
1 GAGGGAATTCAGAGTGGCCACCCGTTCTGAAAGTTTGATTTTCTTCTG
27163127 G
1 G
27163128 TGAACTGGAC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.34
Consensus pattern (48 bp):
GAGGGAATTCAGAGTGGCCACCCGTTCTGAAAGTTTGATTTTCTTCTG
Found at i:27166152 original size:26 final size:26
Alignment explanation
Indices: 27166122--27166179 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
27166112 TCGTAGATGG
*
27166122 ATTTACCTAACCCATTATCATGGAAT
1 ATTTACCTAACCCATTATCATGGAAC
*
27166148 ATTTACCTAATCCATTATCATGGAAC
1 ATTTACCTAACCCATTATCATGGAAC
27166174 ATTTAC
1 ATTTAC
27166180 AACCGTATCT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.34, C:0.22, G:0.07, T:0.36
Consensus pattern (26 bp):
ATTTACCTAACCCATTATCATGGAAC
Found at i:27166801 original size:26 final size:26
Alignment explanation
Indices: 27166772--27166827 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
27166762 TGGTACAAAT
27166772 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
27166798 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
27166824 TGAT
1 TGAT
27166828 GGGCATTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:27168466 original size:27 final size:27
Alignment explanation
Indices: 27168426--27168523 Score: 146
Period size: 27 Copynumber: 3.6 Consensus size: 27
27168416 AGGAAGCGTC
27168426 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTATGCCACAATTATCTGAT
*
27168453 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTATGCCACAAT-TATCTGAT
27168479 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTATGCCACAATTATCTGAT
*
27168507 CTGGTGGCTCTGCCACA
1 CTGGTGGCTATGCCACA
27168524 TCTGGTGGCT
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
26 3 0.05
27 58 0.91
28 3 0.05
ACGTcount: A:0.18, C:0.27, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAATTATCTGAT
Found at i:27168528 original size:18 final size:18
Alignment explanation
Indices: 27168505--27168559 Score: 110
Period size: 18 Copynumber: 3.1 Consensus size: 18
27168495 CAATTATCTG
27168505 ATCTGGTGGCTCTGCCAC
1 ATCTGGTGGCTCTGCCAC
27168523 ATCTGGTGGCTCTGCCAC
1 ATCTGGTGGCTCTGCCAC
27168541 ATCTGGTGGCTCTGCCAC
1 ATCTGGTGGCTCTGCCAC
27168559 A
1 A
27168560 ATATCTGTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.13, C:0.33, G:0.27, T:0.27
Consensus pattern (18 bp):
ATCTGGTGGCTCTGCCAC
Found at i:27168571 original size:27 final size:27
Alignment explanation
Indices: 27168541--27168593 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
27168531 GCTCTGCCAC
*
27168541 ATCTGGTGGC-TCTGCCACAATATCTGT
1 ATCTGGTGACTTC-GCCACAATATCTGT
*
27168568 ATCTGGTGACTTCGTCACAATATCTG
1 ATCTGGTGACTTCGCCACAATATCTG
27168594 GCAGCCTCGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 21 0.91
28 2 0.09
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.34
Consensus pattern (27 bp):
ATCTGGTGACTTCGCCACAATATCTGT
Found at i:27171785 original size:19 final size:19
Alignment explanation
Indices: 27171761--27171803 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
27171751 GTGTTACAAT
*
27171761 AATTGGACCCGAGATTGAA
1 AATTGGACCCAAGATTGAA
*
27171780 AATTGGACCTAAGATTGAA
1 AATTGGACCCAAGATTGAA
27171799 AATTG
1 AATTG
27171804 AGCTTGAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.40, C:0.12, G:0.23, T:0.26
Consensus pattern (19 bp):
AATTGGACCCAAGATTGAA
Found at i:27172190 original size:61 final size:57
Alignment explanation
Indices: 27172118--27172251 Score: 160
Period size: 61 Copynumber: 2.3 Consensus size: 57
27172108 TTCAAAAATA
* * *
27172118 ATATTATTTTAATATTTTTAATATTTAATTTAATTTAATACTTATCTTGTAGATAAGTATT
1 ATATTAATTTAATATTTTTAATATTAAATTTAATCTAATACTTATC-T-T-GATAAGT-TT
* * ** *
27172179 CTATTACTTTAATAAATTTAATATTAAATTTAATCTAATATTTATCTTGATAAGTTT
1 ATATTAATTTAATATTTTTAATATTAAATTTAATCTAATACTTATCTTGATAAGTTT
27172236 ATATTAATTTAATATT
1 ATATTAATTTAATATT
27172252 AAAGTAATTT
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
57 14 0.23
58 7 0.11
59 1 0.02
60 1 0.02
61 39 0.63
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.54
Consensus pattern (57 bp):
ATATTAATTTAATATTTTTAATATTAAATTTAATCTAATACTTATCTTGATAAGTTT
Found at i:27172882 original size:10 final size:10
Alignment explanation
Indices: 27172849--27172883 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
27172839 TTCTATTGTA
27172849 TTTTCTTTTT
1 TTTTCTTTTT
27172859 TTTTAC-TTTT
1 TTTT-CTTTTT
27172869 TTTTCTTTTT
1 TTTTCTTTTT
27172879 TTTTC
1 TTTTC
27172884 CCGATTCTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
9 1 0.04
10 21 0.91
11 1 0.04
ACGTcount: A:0.03, C:0.11, G:0.00, T:0.86
Consensus pattern (10 bp):
TTTTCTTTTT
Found at i:27184444 original size:13 final size:13
Alignment explanation
Indices: 27184428--27184455 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
27184418 TTTGAAAAAA
27184428 TGGTTGAATTTGT
1 TGGTTGAATTTGT
27184441 TGGTTGAATTTGT
1 TGGTTGAATTTGT
27184454 TG
1 TG
27184456 ATATGCAGGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.00, G:0.32, T:0.54
Consensus pattern (13 bp):
TGGTTGAATTTGT
Found at i:27187572 original size:88 final size:88
Alignment explanation
Indices: 27187318--27187581 Score: 377
Period size: 89 Copynumber: 3.0 Consensus size: 88
27187308 GTAAAAAAGG
* * *
27187318 CCTCAAACTTTTTCAAAACAAGCAATTAAGTCCCTACTCTTTTTATGCACTCAATTGGATACTTG
1 CCTCAAACTTTTTCAAAAAAAGCAATTAAGCCCCTACT-TTTTT-TGCACTCAATTGGGTACTTG
*
27187383 AACTTTCAAAATGTATCAAAAAGGC
64 AACTTTCAAAATGTATCAAAAAGAC
* * * *
27187408 TCTCAAACTTTTTAAAAAAAAAAGCAATTAAGCCCC-CCTTTTTTTGCACTCAATTTGGTACTTG
1 CCTCAAACTTTTT--CAAAAAAAGCAATTAAGCCCCTACTTTTTTTGCACTCAATTGGGTACTTG
27187472 AACTTTCAAAATGTATCAAAAAGAC
64 AACTTTCAAAATGTATCAAAAAGAC
* *
27187497 CCTCAAACTTTTTCAAAAAAAGCTATTAAGCCCCTACTTTTTTTTCACTCAATTGGGTACTTGAA
1 CCTCAAACTTTTTCAAAAAAAGCAATTAAGCCCCTACTTTTTTTGCACTCAATTGGGTACTTGAA
* *
27187562 CTATCAAAATGCATCAAAAA
66 CTTTCAAAATGTATCAAAAA
27187582 AATCCTTTGA
Statistics
Matches: 155, Mismatches: 16, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
87 19 0.12
88 45 0.29
89 54 0.35
90 17 0.11
91 2 0.01
92 18 0.12
ACGTcount: A:0.37, C:0.22, G:0.09, T:0.33
Consensus pattern (88 bp):
CCTCAAACTTTTTCAAAAAAAGCAATTAAGCCCCTACTTTTTTTGCACTCAATTGGGTACTTGAA
CTTTCAAAATGTATCAAAAAGAC
Found at i:27187890 original size:66 final size:66
Alignment explanation
Indices: 27187809--27187941 Score: 266
Period size: 66 Copynumber: 2.0 Consensus size: 66
27187799 ACTTTAACCG
27187809 TTGACCATTAAATTTAACAACCCCCAGTTTTTTCCAATTAAAGCCATCACATGTCACAACACGAT
1 TTGACCATTAAATTTAACAACCCCCAGTTTTTTCCAATTAAAGCCATCACATGTCACAACACGAT
27187874 A
66 A
27187875 TTGACCATTAAATTTAACAACCCCCAGTTTTTTCCAATTAAAGCCATCACATGTCACAACACGAT
1 TTGACCATTAAATTTAACAACCCCCAGTTTTTTCCAATTAAAGCCATCACATGTCACAACACGAT
27187940 A
66 A
27187941 T
1 T
27187942 GACATGTGGT
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 67 1.00
ACGTcount: A:0.36, C:0.27, G:0.08, T:0.29
Consensus pattern (66 bp):
TTGACCATTAAATTTAACAACCCCCAGTTTTTTCCAATTAAAGCCATCACATGTCACAACACGAT
A
Found at i:27188190 original size:26 final size:26
Alignment explanation
Indices: 27188141--27188192 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27188131 TTTTTCTAAT
*
27188141 TTTTAATAAAATTTAAATATTTTTAA
1 TTTTAATAAAATTTAAATAATTTTAA
*
27188167 TTTTATTAAAATTT-AATAAATTTTAA
1 TTTTAATAAAATTTAAAT-AATTTTAA
27188193 CGAATTTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 3 0.13
26 20 0.87
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (26 bp):
TTTTAATAAAATTTAAATAATTTTAA
Found at i:27189287 original size:15 final size:15
Alignment explanation
Indices: 27189267--27189295 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
27189257 AATTTATATT
27189267 TTTTATTTTATTTTC
1 TTTTATTTTATTTTC
27189282 TTTTATTTTATTTT
1 TTTTATTTTATTTT
27189296 TTCACAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTATTTTATTTTC
Found at i:27189807 original size:14 final size:15
Alignment explanation
Indices: 27189788--27189817 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
27189778 GTTTATTATA
27189788 TGTG-AAGTATCATG
1 TGTGAAAGTATCATG
27189802 TGTGAAAGTATCATG
1 TGTGAAAGTATCATG
27189817 T
1 T
27189818 CTAAATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (15 bp):
TGTGAAAGTATCATG
Found at i:27198330 original size:43 final size:43
Alignment explanation
Indices: 27198282--27198393 Score: 188
Period size: 43 Copynumber: 2.6 Consensus size: 43
27198272 CCGGCATTAC
27198282 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
27198325 GCCTGCTAGACACGAAGGCCCGAATACACATCACTGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
27198368 GCCTACTAGGCACGAAGGCCCCAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
27198394 TAATACCAGC
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 64 1.00
ACGTcount: A:0.31, C:0.34, G:0.24, T:0.11
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:27198442 original size:38 final size:38
Alignment explanation
Indices: 27198391--27198470 Score: 133
Period size: 38 Copynumber: 2.1 Consensus size: 38
27198381 GAAGGCCCCA
* * *
27198391 ATATAATACCAGCACTAGGCCTGCGGGATTTATCCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
27198429 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
27198467 ATAT
1 ATAT
27198471 TGGTGTTATA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.23
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
Found at i:27198599 original size:40 final size:38
Alignment explanation
Indices: 27198550--27198625 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 38
27198540 GCTTCGTTTT
* *
27198550 ACCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATATAAC
1 ACCAACACGAAGCCTGCGGG-ATTTAA-CCCGGATATAAC
27198590 ACCAACACGAAGCCTGCGGGATTTAACCCGGATATA
1 ACCAACACGAAGCCTGCGGGATTTAACCCGGATATA
27198626 CATCGAATAT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
38 10 0.29
39 5 0.15
40 19 0.56
ACGTcount: A:0.30, C:0.29, G:0.24, T:0.17
Consensus pattern (38 bp):
ACCAACACGAAGCCTGCGGGATTTAACCCGGATATAAC
Found at i:27203629 original size:26 final size:26
Alignment explanation
Indices: 27203591--27203646 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
27203581 TGATACAAAT
*
27203591 TGATAATGTGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
27203617 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
27203643 TGAT
1 TGAT
27203647 TGGAATTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:27210248 original size:24 final size:24
Alignment explanation
Indices: 27210216--27210263 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
27210206 AAGTACCTCC
27210216 TGACTTAGAAGGAGTTGAATCTTA
1 TGACTTAGAAGGAGTTGAATCTTA
27210240 TGACTTAGAAGGAGTTGAATCTTA
1 TGACTTAGAAGGAGTTGAATCTTA
27210264 GACAGCATAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.08, G:0.25, T:0.33
Consensus pattern (24 bp):
TGACTTAGAAGGAGTTGAATCTTA
Found at i:27215563 original size:21 final size:21
Alignment explanation
Indices: 27215539--27215583 Score: 74
Period size: 21 Copynumber: 2.1 Consensus size: 21
27215529 CTACAAATCA
27215539 TGTGGAAGGGTTACAC-AGCCG
1 TGTGGAAGGGTTACACGA-CCG
27215560 TGTGGAAGGGTTACACGACCG
1 TGTGGAAGGGTTACACGACCG
27215581 TGT
1 TGT
27215584 AATAGACTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 22 0.96
22 1 0.04
ACGTcount: A:0.22, C:0.18, G:0.38, T:0.22
Consensus pattern (21 bp):
TGTGGAAGGGTTACACGACCG
Found at i:27217863 original size:19 final size:19
Alignment explanation
Indices: 27217823--27217869 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
27217813 ACAATAAATA
* *
27217823 TCATATTTATTCATTATTT
1 TCATATTTATTCACTATAT
27217842 TCATATTTATCTCACTA-AT
1 TCATATTTAT-TCACTATAT
27217861 TCATTATTT
1 TCA-TATTT
27217870 CCACTTCTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.28, C:0.15, G:0.00, T:0.57
Consensus pattern (19 bp):
TCATATTTATTCACTATAT
Found at i:27218642 original size:18 final size:18
Alignment explanation
Indices: 27218616--27218651 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
27218606 AAATTAAAAT
*
27218616 ATTAGTTAAACTAATTAA
1 ATTAATTAAACTAATTAA
*
27218634 ATTAATTAACCTAATTAA
1 ATTAATTAAACTAATTAA
27218652 CATGATGAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.50, C:0.08, G:0.03, T:0.39
Consensus pattern (18 bp):
ATTAATTAAACTAATTAA
Found at i:27221494 original size:33 final size:33
Alignment explanation
Indices: 27221421--27221494 Score: 78
Period size: 33 Copynumber: 2.2 Consensus size: 33
27221411 ATATGTATAT
* *
27221421 GTGTAAGACCATACCTAAGCTATGGCATCCTGA
1 GTGTAAGACCATAACTAAGCTATGGCATCATGA
** * *
27221454 -TGATAAGACCATAACTGGGTTATGGCATTATGA
1 GTG-TAAGACCATAACTAAGCTATGGCATCATGA
27221487 GTGTAAGA
1 GTGTAAGA
27221495 TCATGGCAGG
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
32 2 0.06
33 29 0.88
34 2 0.06
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.27
Consensus pattern (33 bp):
GTGTAAGACCATAACTAAGCTATGGCATCATGA
Found at i:27221494 original size:105 final size:101
Alignment explanation
Indices: 27221284--27221480 Score: 234
Period size: 105 Copynumber: 1.9 Consensus size: 101
27221274 AATTGATGGA
* * * ** **
27221284 TAAGACCATGATTGGACCATGGCAATGTTTGAATGTAAGAACATAGCTGGGCTATGGCATTTTAA
1 TAAGACCATGATTGGACCATGGCAATATATGAATGTAAGAACATACCTAAGCTATGGCATCCTAA
27221349 TGAAAAGACCATAATCGGGTTATGGCACCATAAACG
66 TGAAAAGACCATAATCGGGTTATGGCACCATAAACG
* * *
27221385 TAAGACCATGATTGGACCATGGTATTATATGTATATGTGTAAGACCATACCTAAGCTATGGCATC
1 TAAGACCATGATTGGACCATGGCAATATATG-A-A--TGTAAGAACATACCTAAGCTATGGCATC
* *
27221450 CTGATGATAAGACCATAA-CTGGGTTATGGCA
62 CTAATGAAAAGACCATAATC-GGGTTATGGCA
27221481 TTATGAGTGT
Statistics
Matches: 79, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
101 27 0.34
102 1 0.01
103 1 0.01
104 1 0.01
105 49 0.62
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (101 bp):
TAAGACCATGATTGGACCATGGCAATATATGAATGTAAGAACATACCTAAGCTATGGCATCCTAA
TGAAAAGACCATAATCGGGTTATGGCACCATAAACG
Found at i:27224680 original size:42 final size:43
Alignment explanation
Indices: 27224572--27224730 Score: 153
Period size: 43 Copynumber: 3.7 Consensus size: 43
27224562 AGCTCGTACA
* * ** **
27224572 ATGCCAACGTCTCAGATGTGGTCTTACATGT-AATCAAATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACATAAATCAAATA-CG
* * *
27224615 ATGCCACTGTCCCAAACAAGGTCTTACACA-AAATCAAATACG
1 ATGCCAATGTCCCAGACATGGTCTTACACATAAATCAAATACG
*
27224657 ATGCCAATGTCCCAGACATGGTCTTACACATAAATCGTAAGT-CG
1 ATGCCAATGTCCCAGACATGGTCTTACACATAAATC--AAATACG
* * *
27224701 ATGCCAACGTCCCAGACGTGTTCTTACACA
1 ATGCCAATGTCCCAGACATGGTCTTACACA
27224731 GAAACACATA
Statistics
Matches: 96, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
42 29 0.30
43 35 0.36
44 29 0.30
45 3 0.03
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACATAAATCAAATACG
Found at i:27224713 original size:44 final size:41
Alignment explanation
Indices: 27224572--27224730 Score: 140
Period size: 42 Copynumber: 3.7 Consensus size: 41
27224562 AGCTCGTACA
* ** ***
27224572 ATGCCAACGTCTCAGATGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACAAAATC-AA-ATCG
* *
27224615 ATGCC-ACTGTCCCAAACAAGGTCTTACACAAAATCAAATACG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACAAAATCAAAT-CG
* *
27224657 ATGCCAATGTCCCAGACATGGTCTTACACATAAATCGTAAGTCG
1 ATGCCAACGTCCCAGACATGGTCTTACACA-AAATC--AAATCG
* *
27224701 ATGCCAACGTCCCAGACGTGTTCTTACACA
1 ATGCCAACGTCCCAGACATGGTCTTACACA
27224731 GAAACACATA
Statistics
Matches: 95, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
41 2 0.02
42 31 0.33
43 30 0.32
44 29 0.31
45 3 0.03
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (41 bp):
ATGCCAACGTCCCAGACATGGTCTTACACAAAATCAAATCG
Found at i:27228738 original size:53 final size:51
Alignment explanation
Indices: 27228624--27228741 Score: 121
Period size: 53 Copynumber: 2.2 Consensus size: 51
27228614 TACACGAAAG
** * * *
27228624 CACTTATCACTTTTCTCTGATGCCATAGCCTAGCTGTGGTCTTATACAGAT
1 CACTTATCACTTTAATCCGAAGCCATAGCCTAGCTATGGTCTTATACAGAT
* *
27228675 CGCTTGTATCACTTTAATCCGAAGCCATAG-CTCAGCTATGGTCTTATACGGGAAT
1 CAC-T-TATCACTTTAATCCGAAGCCATAGCCT-AGCTATGGTCTTATAC-AG-AT
27228730 CACTTATCACTT
1 CACTTATCACTT
27228742 GTTGCCATCG
Statistics
Matches: 54, Mismatches: 8, Indels: 8
0.77 0.11 0.11
Matches are distributed among these distances:
51 2 0.04
52 3 0.06
53 43 0.80
54 2 0.04
55 4 0.07
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35
Consensus pattern (51 bp):
CACTTATCACTTTAATCCGAAGCCATAGCCTAGCTATGGTCTTATACAGAT
Found at i:27236189 original size:53 final size:51
Alignment explanation
Indices: 27236075--27236192 Score: 119
Period size: 53 Copynumber: 2.2 Consensus size: 51
27236065 TACACGAAAG
** * * *
27236075 CACTTATCACTTTTCTCCGATGCCATAGCCCAGCTGTGATCTTATACAGAT
1 CACTTATCACTTTAATCCGAAGCCATAGCCCAGCTATGATCTTACACAGAT
* * **
27236126 CGCTTGTATCACTTTAATCCGAAGCCATAGCCCAGCTATGGTCTTACATGGGAAT
1 CAC-T-TATCACTTTAATCCGAAGCCATAGCCCAGCTATGATCTTACA-CAG-AT
27236181 CACTTATCACTT
1 CACTTATCACTT
27236193 GTTGCCATGG
Statistics
Matches: 53, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
51 2 0.04
52 1 0.02
53 44 0.83
54 2 0.04
55 4 0.08
ACGTcount: A:0.25, C:0.28, G:0.15, T:0.32
Consensus pattern (51 bp):
CACTTATCACTTTAATCCGAAGCCATAGCCCAGCTATGATCTTACACAGAT
Found at i:27244301 original size:17 final size:19
Alignment explanation
Indices: 27244259--27244302 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
27244249 ACGAAATTTT
*
27244259 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
27244278 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
27244296 AA-TATTA
1 AATTATTA
27244303 CTGCATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:27244351 original size:15 final size:15
Alignment explanation
Indices: 27244333--27244361 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
27244323 TTTTTATGAA
27244333 AATTATTATTATTAT
1 AATTATTATTATTAT
27244348 AATTATTATTATTA
1 AATTATTATTATTA
27244362 GATAGGGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
AATTATTATTATTAT
Found at i:27245119 original size:39 final size:39
Alignment explanation
Indices: 27245065--27245142 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
27245055 TTTTGTTGTT
27245065 TAAGTGGGGGACCGAAGCTCTTCTTAGCAGCATGATGAA
1 TAAGTGGGGGACCGAAGCTCTTCTTAGCAGCATGATGAA
27245104 TAAGTGGGGGACCGAAGCTCTTCTTAGCAGCATGATGAA
1 TAAGTGGGGGACCGAAGCTCTTCTTAGCAGCATGATGAA
27245143 GTGGTGGATA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (39 bp):
TAAGTGGGGGACCGAAGCTCTTCTTAGCAGCATGATGAA
Found at i:27246242 original size:20 final size:20
Alignment explanation
Indices: 27246199--27246242 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
27246189 GTTGTTTTGT
27246199 TATGGGCCAACTGTATTGAA
1 TATGGGCCAACTGTATTGAA
*
27246219 -ATGGGCCCAACTGTGTT-AA
1 TATGGG-CCAACTGTATTGAA
27246238 TATGG
1 TATGG
27246243 CTAAGGCCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (20 bp):
TATGGGCCAACTGTATTGAA
Found at i:27246313 original size:60 final size:60
Alignment explanation
Indices: 27246237--27246373 Score: 156
Period size: 60 Copynumber: 2.3 Consensus size: 60
27246227 AACTGTGTTA
*
27246237 ATAT-GGCTAAGGCCCAATATA-TCTCGACT-TGTAATAGGACTACGGCCCAAATTGATACTG
1 ATATGGGCTAAGGCCCAATATACTCT-GA-TATGTAA-AGGACTACGGCCCAAATTAATACTG
* * * * *
27246297 ATATGGGCT-AGGCCCAATATACTCTGATACTGTAAGGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAAGGCCCAATATACTCTGATA-TGTAAAGGACTACGGCCCAAATTAATACTG
27246357 ATATGGGCTAAGGCCCA
1 ATATGGGCTAAGGCCCA
27246374 GTTAACACTG
Statistics
Matches: 66, Mismatches: 6, Indels: 9
0.81 0.07 0.11
Matches are distributed among these distances:
59 1 0.02
60 46 0.70
61 19 0.29
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.26
Consensus pattern (60 bp):
ATATGGGCTAAGGCCCAATATACTCTGATATGTAAAGGACTACGGCCCAAATTAATACTG
Done.