Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 97 of 313
Found at i:32244388 original size:33 final size:33
Alignment explanation
Indices: 32244351--32244467 Score: 117
Period size: 33 Copynumber: 3.5 Consensus size: 33
32244341 AATCCGGACT
* *
32244351 AGTAGCAGGGATGATGCCCCTATATGCAGCCCA
1 AGTAGCAGGGATGATGCCCCTATAAGCAGGCCA
* * ** **
32244384 AGTAGTAGGAATGATGTTCAAATAAGCAGGCCA
1 AGTAGCAGGGATGATGCCCCTATAAGCAGGCCA
* * **
32244417 AGTAGCAGTGATGGTGCCCCTATAAGCAGGTTA
1 AGTAGCAGGGATGATGCCCCTATAAGCAGGCCA
*
32244450 AGTAGCAGCGATGATGCC
1 AGTAGCAGGGATGATGCC
32244468 TCAATAATCA
Statistics
Matches: 64, Mismatches: 20, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
33 64 1.00
ACGTcount: A:0.31, C:0.20, G:0.29, T:0.21
Consensus pattern (33 bp):
AGTAGCAGGGATGATGCCCCTATAAGCAGGCCA
Found at i:32244474 original size:66 final size:66
Alignment explanation
Indices: 32244351--32244479 Score: 145
Period size: 66 Copynumber: 2.0 Consensus size: 66
32244341 AATCCGGACT
* * *
32244351 AGTAGCAGGGATGATGCCCCTATATGCAGCCCAAGTAGTAGGAATGATGTTCAAATAAGCAGGCC
1 AGTAGCAGGGATGATGCCCCTATAAGCAGCCCAAGTAGCAGGAATGATGCTCAAATAAGCAGGCC
32244416 A
66 A
* * *** *
32244417 AGTAGCAGTGATGGTGCCCCTATAAGCAGGTTAAGTAGCAGCG-ATGATGCCTC-AATAATCAGG
1 AGTAGCAGGGATGATGCCCCTATAAGCAGCCCAAGTAGCAG-GAATGATG-CTCAAATAAGCAGG
32244480 TTAAGTATTG
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
66 49 0.94
67 3 0.06
ACGTcount: A:0.32, C:0.19, G:0.28, T:0.21
Consensus pattern (66 bp):
AGTAGCAGGGATGATGCCCCTATAAGCAGCCCAAGTAGCAGGAATGATGCTCAAATAAGCAGGCC
A
Found at i:32244480 original size:33 final size:33
Alignment explanation
Indices: 32244351--32244486 Score: 103
Period size: 33 Copynumber: 4.1 Consensus size: 33
32244341 AATCCGGACT
* * * ***
32244351 AGTAGCAGGGATGATGCCCCTATATGCAGCCCA
1 AGTAGCAGCGATGATGCCCCAATAAGCAGGTTA
* ** * **
32244384 AGTAGTAG-GAATGATGTTCAAATAAGCAGGCCA
1 AGTAGCAGCG-ATGATGCCCCAATAAGCAGGTTA
* * *
32244417 AGTAGCAGTGATGGTGCCCCTATAAGCAGGTTA
1 AGTAGCAGCGATGATGCCCCAATAAGCAGGTTA
* *
32244450 AGTAGCAGCGATGATGCCTCAATAATCAGGTTA
1 AGTAGCAGCGATGATGCCCCAATAAGCAGGTTA
32244483 AGTA
1 AGTA
32244487 TTGGGGGAAA
Statistics
Matches: 81, Mismatches: 20, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
32 1 0.01
33 79 0.98
34 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.27, T:0.22
Consensus pattern (33 bp):
AGTAGCAGCGATGATGCCCCAATAAGCAGGTTA
Found at i:32245435 original size:25 final size:25
Alignment explanation
Indices: 32245401--32245449 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
32245391 ATTCACATTG
*
32245401 CTGCTGTAGTTCTTAGCTCCGTGAC
1 CTGCTCTAGTTCTTAGCTCCGTGAC
32245426 CTGCTCTAGTTCTTAGCTCCGTGA
1 CTGCTCTAGTTCTTAGCTCCGTGA
32245450 TTACCATGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.12, C:0.29, G:0.22, T:0.37
Consensus pattern (25 bp):
CTGCTCTAGTTCTTAGCTCCGTGAC
Found at i:32250110 original size:14 final size:15
Alignment explanation
Indices: 32250093--32250122 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
32250083 AAAAGGAAAG
32250093 AGAAAAAAA-ATAAT
1 AGAAAAAAATATAAT
32250107 AGAAAAAAATATAAT
1 AGAAAAAAATATAAT
32250122 A
1 A
32250123 TATAAACGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.77, C:0.00, G:0.07, T:0.17
Consensus pattern (15 bp):
AGAAAAAAATATAAT
Found at i:32251893 original size:22 final size:24
Alignment explanation
Indices: 32251868--32251913 Score: 78
Period size: 22 Copynumber: 2.0 Consensus size: 24
32251858 ATATTTATAC
32251868 ATTTATTTG-TTTTT-CTTTTTTT
1 ATTTATTTGTTTTTTCCTTTTTTT
32251890 ATTTATTTGTTTTTTCCTTTTTTT
1 ATTTATTTGTTTTTTCCTTTTTTT
32251914 CTCATTATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 9 0.41
23 5 0.23
24 8 0.36
ACGTcount: A:0.09, C:0.07, G:0.04, T:0.80
Consensus pattern (24 bp):
ATTTATTTGTTTTTTCCTTTTTTT
Found at i:32251904 original size:18 final size:18
Alignment explanation
Indices: 32251831--32251897 Score: 53
Period size: 22 Copynumber: 3.4 Consensus size: 18
32251821 TCTTTTATAC
32251831 TTTATTTTTCTTTGTATTTA
1 TTTATTTTTCTTT-T-TTTA
* *
32251851 TTTATTTATATTTATACATTTA
1 TTTATTTTTCTTT-T---TTTA
*
32251873 TTTGTTTTTCTTTTTTTA
1 TTTATTTTTCTTTTTTTA
32251891 TTTATTT
1 TTTATTT
32251898 GTTTTTTCCT
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
18 10 0.26
20 12 0.32
21 1 0.03
22 15 0.39
ACGTcount: A:0.18, C:0.04, G:0.03, T:0.75
Consensus pattern (18 bp):
TTTATTTTTCTTTTTTTA
Found at i:32251941 original size:21 final size:21
Alignment explanation
Indices: 32251908--32251969 Score: 72
Period size: 21 Copynumber: 2.9 Consensus size: 21
32251898 GTTTTTTCCT
*
32251908 TTTTTTCTCATTATTATTATTG
1 TTTTATCT-ATTATTATTATTG
32251930 TTTTATCTATTATTATTATTG
1 TTTTATCTATTATTATTATTG
*
32251951 TCATTTATATATT-TTATTA
1 T--TTTATCTATTATTATTA
32251970 CAAATTGTAC
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
21 14 0.39
22 13 0.36
23 9 0.25
ACGTcount: A:0.24, C:0.06, G:0.03, T:0.66
Consensus pattern (21 bp):
TTTTATCTATTATTATTATTG
Found at i:32252059 original size:20 final size:20
Alignment explanation
Indices: 32252034--32252074 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
32252024 TTTGATAAAC
32252034 TATTTACCCTTATATTTATT
1 TATTTACCCTTATATTTATT
***
32252054 TATTTATTTTTATATTTATT
1 TATTTACCCTTATATTTATT
32252074 T
1 T
32252075 CTTTGTCTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.24, C:0.07, G:0.00, T:0.68
Consensus pattern (20 bp):
TATTTACCCTTATATTTATT
Found at i:32252085 original size:20 final size:20
Alignment explanation
Indices: 32252043--32252095 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
32252033 CTATTTACCC
*
32252043 TTATATTTATTTATTTATTT
1 TTATATTTATTTATTTATCT
* *
32252063 TTATATTTATTTCTTTGTCT
1 TTATATTTATTTATTTATCT
32252083 TTATTATTT-TTTA
1 TTA-TATTTATTTA
32252096 AATTGGCATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 23 0.82
21 5 0.18
ACGTcount: A:0.21, C:0.04, G:0.02, T:0.74
Consensus pattern (20 bp):
TTATATTTATTTATTTATCT
Found at i:32263902 original size:44 final size:44
Alignment explanation
Indices: 32263809--32264040 Score: 252
Period size: 44 Copynumber: 5.2 Consensus size: 44
32263799 TTTTTCTCCT
* ** **
32263809 TGAAGTTGCAATGGAATAGATCAAATATAGCAAATCTTATCTCTC
1 TGAAGTTGCAATGGAGTAGATTGAAGCTA-CAAATCTTATCTCTC
* * * * *
32263854 TGAAGTTGCAGTGGAGCAGATTGAAGCTATAGATCATATCTC-C
1 TGAAGTTGCAATGGAGTAGATTGAAGCTACAAATCTTATCTCTC
* **
32263897 TTGAAGTTGCAATGGAGTAGATCGAAAATAGCAAATCTTATCTCTC
1 -TGAAGTTGCAATGGAGTAGATTGAAGCTA-CAAATCTTATCTCTC
* *
32263943 TGAAGTTGCAGTAGAGTAGATTGAAGCTACAAATCTTATCTCTC
1 TGAAGTTGCAATGGAGTAGATTGAAGCTACAAATCTTATCTCTC
* * *
32263987 TGAAGTTGCAATGGAGTAGATTGAAGCGACAAGTCCTATAC-CTC
1 TGAAGTTGCAATGGAGTAGATTGAAGCTACAAATCTTAT-CTCTC
32264031 TGAAGTTGCA
1 TGAAGTTGCA
32264041 GTAGGATGGA
Statistics
Matches: 155, Mismatches: 28, Indels: 9
0.81 0.15 0.05
Matches are distributed among these distances:
43 1 0.01
44 96 0.62
45 57 0.37
46 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (44 bp):
TGAAGTTGCAATGGAGTAGATTGAAGCTACAAATCTTATCTCTC
Found at i:32263954 original size:89 final size:89
Alignment explanation
Indices: 32263803--32264007 Score: 324
Period size: 89 Copynumber: 2.3 Consensus size: 89
32263793 ACAGATTTTT
* *
32263803 TCTCCTTGAAGTTGCAATGGAATAGATCAAATATAGCAAATCTTATCTCTCTGAAGTTGCAGTGG
1 TCTCCTTGAAGTTGCAATGGAGTAGATCAAATATAGCAAATCTTATCTCTCTGAAGTTGCAGTAG
* *
32263868 AGCAGATTGAAGCTATAGATCATA
66 AGCAGATTGAAGCTACAAATCATA
32263892 TCTCCTTGAAGTTGCAATGGAGTAGATCGAAA-ATAGCAAATCTTATCTCTCTGAAGTTGCAGTA
1 TCTCCTTGAAGTTGCAATGGAGTAGATC-AAATATAGCAAATCTTATCTCTCTGAAGTTGCAGTA
* *
32263956 GAGTAGATTGAAGCTACAAATCTTA
65 GAGCAGATTGAAGCTACAAATCATA
32263981 TCT-CTCTGAAGTTGCAATGGAGTAGAT
1 TCTCCT-TGAAGTTGCAATGGAGTAGAT
32264008 TGAAGCGACA
Statistics
Matches: 108, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
88 2 0.02
89 103 0.95
90 3 0.03
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.31
Consensus pattern (89 bp):
TCTCCTTGAAGTTGCAATGGAGTAGATCAAATATAGCAAATCTTATCTCTCTGAAGTTGCAGTAG
AGCAGATTGAAGCTACAAATCATA
Found at i:32264136 original size:124 final size:124
Alignment explanation
Indices: 32263978--32264226 Score: 471
Period size: 124 Copynumber: 2.0 Consensus size: 124
32263968 GCTACAAATC
32263978 TTATCTCTCTGAAGTTGCAATGGAGTAGATTGAAGCGACAAGTCCTATACCTCTGAAGTTGCAGT
1 TTATCTCTCTGAAGTTGCAATGGAGTAGATTGAAGCGACAAGTCCTATACCTCTGAAGTTGCAGT
*
32264043 AGGATGGATTGAAGTCATCATTGTGAATCTTATCTCCCCGAAGTTGTAGTGAAGCATAT
66 AAGATGGATTGAAGTCATCATTGTGAATCTTATCTCCCCGAAGTTGTAGTGAAGCATAT
*
32264102 TTATCTCTCTGAAGTTGCAGTGGAGTAGATTGAAGCGACAAGTCCTATACCTCTGAAGTTGCAGT
1 TTATCTCTCTGAAGTTGCAATGGAGTAGATTGAAGCGACAAGTCCTATACCTCTGAAGTTGCAGT
*
32264167 AAGATGGATTGAAGTCATCATTGTGAATCTTATCTCCCTGAAGTTGTAGTGAAGCATAT
66 AAGATGGATTGAAGTCATCATTGTGAATCTTATCTCCCCGAAGTTGTAGTGAAGCATAT
32264226 T
1 T
32264227 AAAGCCACAA
Statistics
Matches: 122, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
124 122 1.00
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.32
Consensus pattern (124 bp):
TTATCTCTCTGAAGTTGCAATGGAGTAGATTGAAGCGACAAGTCCTATACCTCTGAAGTTGCAGT
AAGATGGATTGAAGTCATCATTGTGAATCTTATCTCCCCGAAGTTGTAGTGAAGCATAT
Found at i:32264242 original size:44 final size:44
Alignment explanation
Indices: 32264192--32264401 Score: 156
Period size: 44 Copynumber: 4.6 Consensus size: 44
32264182 CATCATTGTG
* * *
32264192 AATCTTATCTCCCTGAAGTTGTAGTGAAGCATATTAAAGCCACA
1 AATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTAAAGACACA
* * * * * *
32264236 AATCTTATCCCCCTGAAGTTGCAGTTG-AGTAGATTGAATATAGCG
1 AATCTTATCTCCCTGAAGTTGCAG-TGAAGCAGATTAAAGACA-CA
* * * *
32264281 AGTCTTATCTCCCTGAAGTTACAGTGGAA-TAAACTATAGCTACA-ACCTACA
1 AATCTTATCTCCCTGAAGTTGCAGT-GAAGCAGA-T-TA---A-AGA-C-ACA
* * *
32264332 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATACT
1 AATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTAAAGACACA
32264376 AATCTTATCTCCCTGAAGTTGCAGTG
1 AATCTTATCTCCCTGAAGTTGCAGTG
32264402 GAGTAGGTTG
Statistics
Matches: 129, Mismatches: 23, Indels: 28
0.72 0.13 0.16
Matches are distributed among these distances:
44 60 0.47
45 29 0.22
46 4 0.03
47 1 0.01
49 2 0.02
50 5 0.04
51 27 0.21
52 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.30
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTAAAGACACA
Found at i:32264271 original size:94 final size:89
Alignment explanation
Indices: 32264102--32264306 Score: 205
Period size: 94 Copynumber: 2.2 Consensus size: 89
32264092 TGAAGCATAT
* * * * * * *
32264102 TTATCTCTCTGAAGTTGCAGTGGAGTAGATTGAAGCGACAAGTCCTATACCTCTGAAGTTGCAGT
1 TTATCTCCCTGAAGTTGCAGTGAAGCAGATTAAAGCCACAAATCCTATACCCCTGAAGTTGCAGT
* *
32264167 AAGATGGATTGAAGTCATCATTGTGAATC
66 AAGATAGATTGAA-T-AT-A--GCGAATC
* * * *
32264196 TTATCTCCCTGAAGTTGTAGTGAAGCATATTAAAGCCACAAATCTTATCCCCCTGAAGTTGCAGT
1 TTATCTCCCTGAAGTTGCAGTGAAGCAGATTAAAGCCACAAATCCTATACCCCTGAAGTTGCAGT
* *
32264261 -TGAGTAGATTGAATATAGCGAGTC
66 AAGA-TAGATTGAATATAGCGAATC
*
32264285 TTATCTCCCTGAAGTTACAGTG
1 TTATCTCCCTGAAGTTGCAGTG
32264307 GAATAAACTA
Statistics
Matches: 93, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
89 25 0.27
91 1 0.01
92 2 0.02
93 3 0.03
94 62 0.67
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (89 bp):
TTATCTCCCTGAAGTTGCAGTGAAGCAGATTAAAGCCACAAATCCTATACCCCTGAAGTTGCAGT
AAGATAGATTGAATATAGCGAATC
Found at i:32264624 original size:14 final size:15
Alignment explanation
Indices: 32264605--32264634 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
32264595 CCGACCTACT
32264605 ACAAA-CAAAAAAAA
1 ACAAACCAAAAAAAA
32264619 ACAAACCAAAAAAAA
1 ACAAACCAAAAAAAA
32264634 A
1 A
32264635 TAATAAATCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.83, C:0.17, G:0.00, T:0.00
Consensus pattern (15 bp):
ACAAACCAAAAAAAA
Found at i:32265983 original size:18 final size:18
Alignment explanation
Indices: 32265945--32265983 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
32265935 ATACTTTATT
* **
32265945 TTTCTTTGTATTTATTTA
1 TTTCTTTATATTTATACA
32265963 TTTCTTTATATTTATACA
1 TTTCTTTATATTTATACA
32265981 TTT
1 TTT
32265984 ATTTGTTTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.21, C:0.08, G:0.03, T:0.69
Consensus pattern (18 bp):
TTTCTTTATATTTATACA
Found at i:32266056 original size:21 final size:24
Alignment explanation
Indices: 32266023--32266073 Score: 72
Period size: 22 Copynumber: 2.2 Consensus size: 24
32266013 TTTTTTTCCT
*
32266023 TTTTTTCTCATTATTA-TTAT-TA
1 TTTTATCTCATTATTATTTATATA
32266045 TTTTATCT-ATTATTATTTATATA
1 TTTTATCTCATTATTATTTATATA
32266068 TTTTAT
1 TTTTAT
32266074 TACAAATTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 7 0.27
22 11 0.42
23 8 0.31
ACGTcount: A:0.25, C:0.06, G:0.00, T:0.69
Consensus pattern (24 bp):
TTTTATCTCATTATTATTTATATA
Found at i:32266165 original size:20 final size:20
Alignment explanation
Indices: 32266140--32266180 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
32266130 TTTGATAAAC
32266140 TATTTACCCTTATATTTATT
1 TATTTACCCTTATATTTATT
***
32266160 TATTTATTTTTATATTTATT
1 TATTTACCCTTATATTTATT
32266180 T
1 T
32266181 CTTTGTCTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.24, C:0.07, G:0.00, T:0.68
Consensus pattern (20 bp):
TATTTACCCTTATATTTATT
Found at i:32266191 original size:20 final size:20
Alignment explanation
Indices: 32266149--32266201 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
32266139 CTATTTACCC
*
32266149 TTATATTTATTTATTTATTT
1 TTATATTTATTTATTTATCT
* *
32266169 TTATATTTATTTCTTTGTCT
1 TTATATTTATTTATTTATCT
32266189 TTATTATTT-TTTA
1 TTA-TATTTATTTA
32266202 AATTGGCATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 23 0.82
21 5 0.18
ACGTcount: A:0.21, C:0.04, G:0.02, T:0.74
Consensus pattern (20 bp):
TTATATTTATTTATTTATCT
Found at i:32268778 original size:186 final size:186
Alignment explanation
Indices: 32268459--32268801 Score: 535
Period size: 186 Copynumber: 1.8 Consensus size: 186
32268449 TAATCAATTG
* * *
32268459 GCTACAAGCACTATGAAGTGGAGGCTTACACTTATCAAACAATTCATGTAAAACTTCTTTCAACC
1 GCTACAAGCACTATGAAGTGGAGGCTTACACTCATCAAACAATTCATATAAAACTTATTTCAACC
* * *
32268524 GTTGAATCATTTCATAAGCTTTTTCAGCATTAGACATTTCATTAAGTGCAAATTCAATATACTTC
66 GTTGAATCATTTCACAAGCTTTTTCAGCACTAGACATTTCACTAAGTGCAAATTCAATATACTTC
*
32268589 AATTTTTTTCTAGGAACTAAACACAAGCAACAAACACAAGAAAACACACCTGATTA
131 AATTTTTGTCTAGGAACTAAACACAAGCAACAAACACAAGAAAACACACCTGATTA
* **
32268645 GCTACAAGCATTATGAAGTGGAGGCTTACACTCATCAAACAATTCATATAAATTTTATTTCAA-C
1 GCTACAAGCACTATGAAGTGGAGGCTTACACTCATCAAACAATTCATATAAAACTTATTTCAACC
* * * *
32268709 TTTTACATCATTTCACAAGCTTTTTCAGCACTAGACATTTCACTAAGTGCAAATTTAATATATTT
66 GTTGA-ATCATTTCACAAGCTTTTTCAGCACTAGACATTTCACTAAGTGCAAATTCAATATACTT
*
32268774 CAATTTTTGTCTAGGATCTAAACACAAG
130 CAATTTTTGTCTAGGAACTAAACACAAG
32268802 AAAATTCATC
Statistics
Matches: 141, Mismatches: 15, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
185 4 0.03
186 137 0.97
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.33
Consensus pattern (186 bp):
GCTACAAGCACTATGAAGTGGAGGCTTACACTCATCAAACAATTCATATAAAACTTATTTCAACC
GTTGAATCATTTCACAAGCTTTTTCAGCACTAGACATTTCACTAAGTGCAAATTCAATATACTTC
AATTTTTGTCTAGGAACTAAACACAAGCAACAAACACAAGAAAACACACCTGATTA
Found at i:32271597 original size:26 final size:26
Alignment explanation
Indices: 32271545--32271625 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
32271535 TGGTACAAAT
* *
32271545 TGATAATGGATTAGGT-AATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
32271570 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
32271596 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
32271622 TGAT
1 TGAT
32271626 TGGAATTTCA
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
25 15 0.28
26 38 0.72
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:32273141 original size:26 final size:26
Alignment explanation
Indices: 32273112--32273161 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
32273102 TACAATTTTA
32273112 CCCTAGGAGATAAATT-ACCGAAATAC
1 CCCTAGG-GATAAATTGACCGAAATAC
* *
32273138 CCCTAGGGTTAAATTGACCTAAAT
1 CCCTAGGGATAAATTGACCGAAAT
32273162 GCATGTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.38, C:0.22, G:0.16, T:0.24
Consensus pattern (26 bp):
CCCTAGGGATAAATTGACCGAAATAC
Found at i:32276260 original size:19 final size:19
Alignment explanation
Indices: 32276236--32276278 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
32276226 CTCAAAACAT
32276236 CCTCTAGTATCTAAATCAC
1 CCTCTAGTATCTAAATCAC
32276255 CCTCTAGTATCTAAATCAC
1 CCTCTAGTATCTAAATCAC
32276274 CCTCT
1 CCTCT
32276279 CCAATTAACC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.28, C:0.35, G:0.05, T:0.33
Consensus pattern (19 bp):
CCTCTAGTATCTAAATCAC
Found at i:32279513 original size:564 final size:563
Alignment explanation
Indices: 32278434--32279564 Score: 1796
Period size: 564 Copynumber: 2.0 Consensus size: 563
32278424 GGCCAAGTAC
* **
32278434 GCCTCACATCCTTTACGAACTAGTTTCTTAGCTACCAGTGTAGAGATCACGTTAGCCAAGTAGTT
1 GCCTCACATCCTTTACGAACTAGTTTCTCAGCTACCAGTACAGAGATCACGTTAGCCAAGTAGTT
*
32278499 CCAACGCTCTCCAATCACGACTACCTCATTATCTTCCTCAGTTCTCAAGACGACCCTCTTAGTCG
66 CCAACGCTCTCCAATCACGACTACCTCATTATCCTCCTCAGTTCTCAAGACGACCCTCTTAGTCG
* * * * *
32278564 CACAGTTCAGAGTGACATGGTGCTTGACCAACCAGTCCATACCCAGAATCAGGTCAAACTCCCCA
131 CACAATCCAAAGTGACACGGTGCTTGACCAACCAGTCCATACCCAGAATCAAGTCAAACTCCCCA
*
32278629 AACAGAAGCACCATTAGATTAGCCAGAAATACCAACCCTTGAACCTCTAACGGAACATCTCTATA
196 AACAGAAGCACCATCAGATTAGCCAGAAATACCAACCCTTGAACCTCTAACGGAACATCTCTATA
* *
32278694 CAGTTTGCTAACCCGAACCAATTGCCCCAGTGGACTTAGTACTCTCACCTCACTAGAAGTACTCT
261 CAGTTTGCTAACCCGAACCAATTACCCCAGTGGACTTAGTACACTCACCTCACTAGAAGTACTCT
*
32278759 CAACCAGAATCCCCAAGTTTCCAGACACAGTGCTAGCTGCATAGGAATCTATGAAATCTATGTCT
326 CAACCAGAATCCCCAAGTTTCCAGACACAGTGCTAGCTACATAGGAATCTATGAAATCTATGTCT
* * * * **
32278824 TCCAAAGCAAAGTAAAGTATATCATAAATCAAGAACATATCGGCGTTAATGTCCAGAGCATATCT
391 ACCAAAGCAAAGTAAAGTACATCATAAATCAAGAACATACCGGCGATAACATCCAGAGCATATCT
* * * * * * *
32278889 GTCCTTTCAGTGACGTGCAGCATAAACAAGAACAGGCTGTCTCGCCTTAGTCTATCCAGCACTTC
456 GTCCTCTCAGCGACATGCAGCATAAACAAGAACAGACTATCTCGCCTCAGTCTATCCAGCACCTC
* *
32278954 TGCCCGATGCTCTCTGACCATAGCCCATACCATTACCACCCCTA
521 TGCACGATGCTCTCTGACCACAGCCCATACCATT-CCACCCCTA
*
32278998 GCCTCACATCCTTTACGAACTAGTTTCTCAGCTACCGGTACAGAGATCACGTTAGCCAAGTAGTT
1 GCCTCACATCCTTTACGAACTAGTTTCTCAGCTACCAGTACAGAGATCACGTTAGCCAAGTAGTT
* *
32279063 CCAACGCTCTCCAATCGCGACTACCTCATTATCCTCCTCAGTTCTCAAGATGACCCTCTTAGTCG
66 CCAACGCTCTCCAATCACGACTACCTCATTATCCTCCTCAGTTCTCAAGACGACCCTCTTAGTCG
*
32279128 CGCAATCCAAAGTGACACGGTGCTTGACCAACCAGTCCATACCCAGAATCAAGTCAAACTCCCCA
131 CACAATCCAAAGTGACACGGTGCTTGACCAACCAGTCCATACCCAGAATCAAGTCAAACTCCCCA
*
32279193 AACAGAAGCACCATCAGATTAGCCAGAAATACCAACCCTTGAACCTCTAACTGAACATCTCTATA
196 AACAGAAGCACCATCAGATTAGCCAGAAATACCAACCCTTGAACCTCTAACGGAACATCTCTATA
* ** * *
32279258 CAGTTTGCTAACCCGAACCGATTACTTCAGTGGACTTAGTACACTCACCTCTCTAGGAGTACTCT
261 CAGTTTGCTAACCCGAACCAATTACCCCAGTGGACTTAGTACACTCACCTCACTAGAAGTACTCT
32279323 CAACCAGAATCCCCAAGTTTCCAGACACAGTGCTAGCTACATAGGAATCTATGAAA-CTTATGTC
326 CAACCAGAATCCCCAAGTTTCCAGACACAGTGCTAGCTACATAGGAATCTATGAAATC-TATGTC
* * * * *
32279387 TACTAAAGCAAAGTAAGGTACATCATACATCAAGAACATACCGGTGATAACATCCAGAGCATATT
390 TACCAAAGCAAAGTAAAGTACATCATAAATCAAGAACATACCGGCGATAACATCCAGAGCATATC
* *
32279452 TGTCCTCTCAGCGACATGCAGCATAAACAAGAACAGACTATCTTGCCTCAGTCTGTCCAGCACCT
455 TGTCCTCTCAGCGACATGCAGCATAAACAAGAACAGACTATCTCGCCTCAGTCTATCCAGCACCT
* * **
32279517 CTGCACGATGCTCTCTGACTACGGCCCATACCATTTGACCCCTA
520 CTGCACGATGCTCTCTGACCACAGCCCATACCATTCCACCCCTA
32279561 GCCT
1 GCCT
32279565 GACCACAGCC
Statistics
Matches: 517, Mismatches: 49, Indels: 3
0.91 0.09 0.01
Matches are distributed among these distances:
563 12 0.02
564 505 0.98
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.24
Consensus pattern (563 bp):
GCCTCACATCCTTTACGAACTAGTTTCTCAGCTACCAGTACAGAGATCACGTTAGCCAAGTAGTT
CCAACGCTCTCCAATCACGACTACCTCATTATCCTCCTCAGTTCTCAAGACGACCCTCTTAGTCG
CACAATCCAAAGTGACACGGTGCTTGACCAACCAGTCCATACCCAGAATCAAGTCAAACTCCCCA
AACAGAAGCACCATCAGATTAGCCAGAAATACCAACCCTTGAACCTCTAACGGAACATCTCTATA
CAGTTTGCTAACCCGAACCAATTACCCCAGTGGACTTAGTACACTCACCTCACTAGAAGTACTCT
CAACCAGAATCCCCAAGTTTCCAGACACAGTGCTAGCTACATAGGAATCTATGAAATCTATGTCT
ACCAAAGCAAAGTAAAGTACATCATAAATCAAGAACATACCGGCGATAACATCCAGAGCATATCT
GTCCTCTCAGCGACATGCAGCATAAACAAGAACAGACTATCTCGCCTCAGTCTATCCAGCACCTC
TGCACGATGCTCTCTGACCACAGCCCATACCATTCCACCCCTA
Found at i:32280804 original size:17 final size:17
Alignment explanation
Indices: 32280779--32280813 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
32280769 TCTCAATCAA
*
32280779 TTTTGCTACAGTCTCAG
1 TTTTACTACAGTCTCAG
*
32280796 TTTTACTACAGTTTCAG
1 TTTTACTACAGTCTCAG
32280813 T
1 T
32280814 ATACACTATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.46
Consensus pattern (17 bp):
TTTTACTACAGTCTCAG
Found at i:32284721 original size:20 final size:20
Alignment explanation
Indices: 32284682--32284721 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
32284672 AAGTAGAAGT
*
32284682 AAAATAAAAAATAAAGGAGA
1 AAAATAAAAAATAAAAGAGA
32284702 AAAAT-AAAAATAGAAAGAGA
1 AAAATAAAAAATA-AAAGAGA
32284722 GGAAGGGGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.75, C:0.00, G:0.15, T:0.10
Consensus pattern (20 bp):
AAAATAAAAAATAAAAGAGA
Found at i:32285809 original size:23 final size:23
Alignment explanation
Indices: 32285779--32285824 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
32285769 CTTTAATGAG
*
32285779 CCTCTAAAACTAAATTTTGTATA
1 CCTCTAAAACCAAATTTTGTATA
*
32285802 CCTCTAAAGCCAAATTTTGTATA
1 CCTCTAAAACCAAATTTTGTATA
32285825 TCATTCTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.37, C:0.20, G:0.07, T:0.37
Consensus pattern (23 bp):
CCTCTAAAACCAAATTTTGTATA
Found at i:32286231 original size:70 final size:69
Alignment explanation
Indices: 32286093--32286234 Score: 185
Period size: 70 Copynumber: 2.0 Consensus size: 69
32286083 TATGTATAAA
* * * *
32286093 TATGAAGAGGAGATATATTGTGCAGCCTCCGGTAAGGCATGTATATTGCTAACCGAACAAGCATA
1 TATGAAGAGGAAATATATTGTGCAGCCTCCGGTAAGGCAAGTACATTGCTAACCGAACAAGCAGA
32286158 TCAC
66 TCAC
* * * * * *
32286162 TATGAAGATGGAAATATATTGTGTAGCCTCTGGTAAGGCAAGTACATTGCTAACTGGACTAGTAG
1 TATGAAGA-GGAAATATATTGTGCAGCCTCCGGTAAGGCAAGTACATTGCTAACCGAACAAGCAG
32286227 ATCAC
65 ATCAC
32286232 TAT
1 TAT
32286235 AAAAGTGAAG
Statistics
Matches: 62, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
69 8 0.13
70 54 0.87
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.27
Consensus pattern (69 bp):
TATGAAGAGGAAATATATTGTGCAGCCTCCGGTAAGGCAAGTACATTGCTAACCGAACAAGCAGA
TCAC
Found at i:32288190 original size:10 final size:10
Alignment explanation
Indices: 32288177--32288214 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
32288167 TACTTTATAT
32288177 ATTTTTTAGA
1 ATTTTTTAGA
*
32288187 ATTTTTTTGA
1 ATTTTTTAGA
*
32288197 ATTTTTTATA
1 ATTTTTTAGA
32288207 ATTTTTTA
1 ATTTTTTA
32288215 AATATATATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.68
Consensus pattern (10 bp):
ATTTTTTAGA
Found at i:32288271 original size:20 final size:19
Alignment explanation
Indices: 32288209--32288273 Score: 53
Period size: 20 Copynumber: 3.3 Consensus size: 19
32288199 TTTTTATAAT
*
32288209 TTTTTAAATATATATTTTGGAT
1 TTTTTAAA-AT-TATTTT-GAA
*
32288231 TTTTTATAAA-TATTTT-TA
1 TTTTTA-AAATTATTTTGAA
32288249 TTTTTAAAATTTATTTTGAA
1 TTTTTAAAA-TTATTTTGAA
32288269 TTTTT
1 TTTTT
32288274 TGTAATCTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
17 3 0.08
18 6 0.17
19 6 0.17
20 12 0.33
22 7 0.19
23 2 0.06
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.65
Consensus pattern (19 bp):
TTTTTAAAATTATTTTGAA
Found at i:32288968 original size:21 final size:21
Alignment explanation
Indices: 32288942--32288984 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
32288932 ATAAACAATA
**
32288942 TAATGGTTTTGCCTTTTAACT
1 TAATGGTTTTAACTTTTAACT
32288963 TAATGGTTTTAACTTTTAACT
1 TAATGGTTTTAACTTTTAACT
32288984 T
1 T
32288985 TAGAAAAGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.23, C:0.12, G:0.12, T:0.53
Consensus pattern (21 bp):
TAATGGTTTTAACTTTTAACT
Found at i:32295573 original size:16 final size:16
Alignment explanation
Indices: 32295552--32295586 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
32295542 CACGATTCAC
32295552 ATGAATTCTGTAATAT
1 ATGAATTCTGTAATAT
32295568 ATGAATTCTGTAATAT
1 ATGAATTCTGTAATAT
32295584 ATG
1 ATG
32295587 TAGCATGGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.37, C:0.06, G:0.14, T:0.43
Consensus pattern (16 bp):
ATGAATTCTGTAATAT
Found at i:32301245 original size:29 final size:31
Alignment explanation
Indices: 32301202--32301262 Score: 81
Period size: 30 Copynumber: 2.0 Consensus size: 31
32301192 GTTGAGAAAG
*
32301202 ATTATAAATAATTTTAAATATTATA-TAAAA
1 ATTACAAATAATTTTAAATATTATATTAAAA
**
32301232 ATTACAAAT-ATTTTTTATATTATATTAAAA
1 ATTACAAATAATTTTAAATATTATATTAAAA
32301262 A
1 A
32301263 ATATACGGTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 13 0.48
30 14 0.52
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (31 bp):
ATTACAAATAATTTTAAATATTATATTAAAA
Found at i:32309796 original size:17 final size:16
Alignment explanation
Indices: 32309776--32309808 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
32309766 CTTCATAAGT
32309776 ATATATCAATCATTTCA
1 ATATATCAAT-ATTTCA
32309793 ATATATCAATATTTCA
1 ATATATCAATATTTCA
32309809 TGCACCATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.42
Consensus pattern (16 bp):
ATATATCAATATTTCA
Found at i:32310223 original size:46 final size:46
Alignment explanation
Indices: 32310095--32310225 Score: 174
Period size: 46 Copynumber: 2.8 Consensus size: 46
32310085 TTTGACATGA
* * * * *
32310095 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATAGTATCTTTCAACCATGGTCTTACACA-TTTCATGTCACGC
* *
32310141 TGCCATCGTATTTTTCAACCATGGTCTTACACATTTCATGTCACGC
1 TGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATGTCACGC
*
32310187 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 TGCCATAGTATCTTTCAACCATGGTCTTACACATTTCAT
32310226 ATCAGAGAGC
Statistics
Matches: 75, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
45 4 0.05
46 71 0.95
ACGTcount: A:0.21, C:0.25, G:0.14, T:0.40
Consensus pattern (46 bp):
TGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATGTCACGC
Found at i:32313525 original size:33 final size:32
Alignment explanation
Indices: 32313476--32313628 Score: 119
Period size: 33 Copynumber: 4.7 Consensus size: 32
32313466 ATGGACCTTT
* * * *
32313476 CCTTTTCTAGTTGTACACTCAAGGTGCACATTC
1 CCTTTTCAAGTGGTACACACAA-GTGCACATAC
*
32313509 CCTTTTCAAGTGGTACACACGAAGTGTACATAC
1 CCTTTTCAAGTGGTACACAC-AAGTGCACATAC
* * * *
32313542 CCTTTCCAATTTGTACACACAAAGTGCACATAA
1 CCTTTTCAAGTGGTACACAC-AAGTGCACATAC
* * * * **
32313575 CCTTTTCAAGT-GTACTCATATAGTGTACCTTT
1 CCTTTTCAAGTGGTACACACA-AGTGCACATAC
*
32313607 CCTTTTCAAGTGGTATACACAA
1 CCTTTTCAAGTGGTACACACAA
32313629 AGTATACCAT
Statistics
Matches: 95, Mismatches: 22, Indels: 7
0.77 0.18 0.06
Matches are distributed among these distances:
31 1 0.01
32 25 0.26
33 67 0.71
34 2 0.02
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (32 bp):
CCTTTTCAAGTGGTACACACAAGTGCACATAC
Found at i:32313630 original size:65 final size:66
Alignment explanation
Indices: 32313470--32313631 Score: 175
Period size: 66 Copynumber: 2.5 Consensus size: 66
32313460 TTTCCGATGG
* * * **
32313470 ACCTTTCCTTTTCTAGTTGTACACTCAAGGTGCACATTCCCTTTTCAAGTGGTACACACGAAGTG
1 ACCTTTCCTTTTCAAGTTGTACACACAAAGTGCACATAACCTTTTCAAGTGGTACACACGAAGTG
32313535 T
66 T
* ** * * * *
32313536 ACATACCCTTTCCAATTTGTACACACAAAGTGCACATAACCTTTTCAAGT-GTACTCA-TATAGT
1 ACCTTTCCTTTTCAAGTTGTACACACAAAGTGCACATAACCTTTTCAAGTGGTACACACGA-AGT
32313599 GT
65 GT
* *
32313601 ACCTTTCCTTTTCAAGTGGTATACACAAAGT
1 ACCTTTCCTTTTCAAGTTGTACACACAAAGT
32313632 ATACCATTCC
Statistics
Matches: 76, Mismatches: 19, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
64 1 0.01
65 35 0.46
66 40 0.53
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.34
Consensus pattern (66 bp):
ACCTTTCCTTTTCAAGTTGTACACACAAAGTGCACATAACCTTTTCAAGTGGTACACACGAAGTG
T
Found at i:32313672 original size:38 final size:38
Alignment explanation
Indices: 32313630--32313702 Score: 119
Period size: 38 Copynumber: 1.9 Consensus size: 38
32313620 TATACACAAA
* *
32313630 GTATACCATTCCTTTTCGTATGGTATACACAAAGTTGT
1 GTATACCATTCCTTTCCATATGGTATACACAAAGTTGT
*
32313668 GTATACCCTTCCTTTCCATATGGTATACACAAAGT
1 GTATACCATTCCTTTCCATATGGTATACACAAAGT
32313703 ATACCTAACT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (38 bp):
GTATACCATTCCTTTCCATATGGTATACACAAAGTTGT
Found at i:32313783 original size:33 final size:33
Alignment explanation
Indices: 32313600--32313783 Score: 140
Period size: 33 Copynumber: 5.5 Consensus size: 33
32313590 TCATATAGTG
*
32313600 TACCTTTCCTTTTCAAGTGGTATACACAAAGTA
1 TACCTTTCCTTTTCATGTGGTATACACAAAGTA
* * *
32313633 TACCATTCCTTTTCGTATGGTATACACAAAGTTGTGTA
1 TACCTTTCCTTTTCATGTGGTATACACAAA-----GTA
* * *
32313671 TACCCTTCCTTTCCATATGGTATACACAAAGTA
1 TACCTTTCCTTTTCATGTGGTATACACAAAGTA
** * * *
32313704 TACC-TAACTTTTCCAAGT-GTACACACAAAGTG
1 TACCTTTCCTTTT-CATGTGGTATACACAAAGTA
* * * *
32313736 CACATAGT-CTTTTCATGTGGTATACACAAGGTA
1 TACCT-TTCCTTTTCATGTGGTATACACAAAGTA
32313769 TACCTTTCCTTTTCA
1 TACCTTTCCTTTTCA
32313784 CATTCGATAG
Statistics
Matches: 116, Mismatches: 25, Indels: 20
0.72 0.16 0.12
Matches are distributed among these distances:
32 24 0.21
33 62 0.53
38 30 0.26
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.36
Consensus pattern (33 bp):
TACCTTTCCTTTTCATGTGGTATACACAAAGTA
Found at i:32313821 original size:29 final size:29
Alignment explanation
Indices: 32313776--32313844 Score: 120
Period size: 29 Copynumber: 2.4 Consensus size: 29
32313766 GTATACCTTT
*
32313776 CCTTTTCACATTCGATAGCCAAAGCTATC
1 CCTTTTCACATTAGATAGCCAAAGCTATC
*
32313805 CCTTTTCACATTAGATAGCCGAAGCTATC
1 CCTTTTCACATTAGATAGCCAAAGCTATC
32313834 CCTTTTCACAT
1 CCTTTTCACAT
32313845 GGTACACACA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.26, C:0.30, G:0.10, T:0.33
Consensus pattern (29 bp):
CCTTTTCACATTAGATAGCCAAAGCTATC
Found at i:32314542 original size:20 final size:21
Alignment explanation
Indices: 32314507--32314547 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
32314497 GTGATTTATC
* *
32314507 TATCAATAACCTTTCATTTTA
1 TATCAATAAACTTTCAATTTA
32314528 TATCAA-AAACTTTCAATTTA
1 TATCAATAAACTTTCAATTTA
32314548 CAGCATATTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.39, C:0.17, G:0.00, T:0.44
Consensus pattern (21 bp):
TATCAATAAACTTTCAATTTA
Found at i:32314810 original size:22 final size:21
Alignment explanation
Indices: 32314760--32314810 Score: 50
Period size: 22 Copynumber: 2.3 Consensus size: 21
32314750 AAATGGGTTT
*
32314760 AATTTTATTTAATCATTTATC
1 AATTTTATTTAATCATTTACC
*
32314781 ATACTTTATTTAATTCAATTT-CC
1 A-ATTTTATTTAA-TC-ATTTACC
32314804 AATTTTA
1 AATTTTA
32314811 GTCCTTAACC
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
21 1 0.04
22 15 0.62
23 4 0.17
24 4 0.17
ACGTcount: A:0.33, C:0.12, G:0.00, T:0.55
Consensus pattern (21 bp):
AATTTTATTTAATCATTTACC
Found at i:32315018 original size:13 final size:13
Alignment explanation
Indices: 32315000--32315025 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32314990 ACACATAATT
32315000 GATAAAATTTTTC
1 GATAAAATTTTTC
32315013 GATAAAATTTTTC
1 GATAAAATTTTTC
32315026 ATGCAATATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (13 bp):
GATAAAATTTTTC
Found at i:32319442 original size:15 final size:15
Alignment explanation
Indices: 32319400--32319442 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
32319390 TACTTACTAT
* *
32319400 AAAATAAATAAATTT
1 AAAATAAATAACTTA
*
32319415 AAAATTAAT-ACTTA
1 AAAATAAATAACTTA
32319429 AAAATAAATAACTT
1 AAAATAAATAACTT
32319443 GAATTATAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.33
Consensus pattern (15 bp):
AAAATAAATAACTTA
Found at i:32320032 original size:12 final size:12
Alignment explanation
Indices: 32320017--32320047 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
32320007 TTCTCTTTTA
32320017 TTTTTCTTTCCC
1 TTTTTCTTTCCC
*
32320029 TTTTTCTTTCTC
1 TTTTTCTTTCCC
32320041 TTTTTCT
1 TTTTTCT
32320048 CCCCTACTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTCTTTCCC
Found at i:32321864 original size:22 final size:22
Alignment explanation
Indices: 32321838--32321881 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
32321828 CGTTACAATG
* *
32321838 TTTACATCTTGGCTTCGTGTTT
1 TTTACATCTTGACTTCATGTTT
*
32321860 TTTACATTTTGACTTCATGTTT
1 TTTACATCTTGACTTCATGTTT
32321882 CCTACACTTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.14, C:0.16, G:0.14, T:0.57
Consensus pattern (22 bp):
TTTACATCTTGACTTCATGTTT
Found at i:32324421 original size:32 final size:33
Alignment explanation
Indices: 32324195--32324431 Score: 124
Period size: 33 Copynumber: 7.1 Consensus size: 33
32324185 TTTTCTAGTT
* * ** *
32324195 GTACACTCAAGGTGTACATTCCCTTTTCAAGTG
1 GTACACACAAAGTGTACATAACCTTTCCAAGTG
* * *
32324228 GTACACACGAAGTGTACAT-ACTCTTTCCAATTT
1 GTACACACAAAGTGTACATAAC-CTTTCCAAGTG
* *
32324261 GTACACACAAAGTGCACATAACCTTTTCAAGT-
1 GTACACACAAAGTGTACATAACCTTTCCAAGTG
* * * ** *
32324293 GTACTCATATAGTGTATC-TTTCCTTTTCAAGTG
1 GTACACACAAAGTGTA-CATAACCTTTCCAAGTG
* ** *
32324326 GTATACACAAAGTTGTGTATACCCTTCCTTTCCATA-TG
1 GTACACACAAAG-TGTACATA----ACCTTTCCA-AGTG
* * *
32324364 GTATACACAAAGTATACCTAACCTTTCCAAGT-
1 GTACACACAAAGTGTACATAACCTTTCCAAGTG
* * * *
32324396 GTACACACAAAGTGCACATAGCCTTTTCATGTG
1 GTACACACAAAGTGTACATAACCTTTCCAAGTG
32324429 GTA
1 GTA
32324432 TACATAAGGT
Statistics
Matches: 154, Mismatches: 37, Indels: 26
0.71 0.17 0.12
Matches are distributed among these distances:
32 51 0.33
33 70 0.45
34 6 0.04
37 4 0.03
38 22 0.14
39 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (33 bp):
GTACACACAAAGTGTACATAACCTTTCCAAGTG
Found at i:32324485 original size:29 final size:29
Alignment explanation
Indices: 32324452--32324518 Score: 98
Period size: 29 Copynumber: 2.3 Consensus size: 29
32324442 ATACCTTTCT
* **
32324452 TTTTCACATTCGATAGCCAAAGTTATCCC
1 TTTTCACATTAGATAAACAAAGTTATCCC
*
32324481 TTTTCACATTAGATAAACGAAGTTATCCC
1 TTTTCACATTAGATAAACAAAGTTATCCC
32324510 TTTTCACAT
1 TTTTCACAT
32324519 GGTACACACA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.30, C:0.24, G:0.09, T:0.37
Consensus pattern (29 bp):
TTTTCACATTAGATAAACAAAGTTATCCC
Found at i:32328004 original size:22 final size:22
Alignment explanation
Indices: 32327979--32328030 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 22
32327969 TTATCCATTC
32327979 AAATATTATAATAAAA-AATTTT
1 AAATATTA-AATAAAACAATTTT
*
32328001 AAATAATAAATAAAACAATTTT
1 AAATATTAAATAAAACAATTTT
32328023 AACATATT
1 AA-ATATT
32328031 CAACAAATGA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 7 0.27
22 15 0.58
23 4 0.15
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.37
Consensus pattern (22 bp):
AAATATTAAATAAAACAATTTT
Found at i:32328150 original size:25 final size:25
Alignment explanation
Indices: 32328097--32328150 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
32328087 ATTTTATTTA
*
32328097 AATAAATAATTTTAAATTAAATATT
1 AATAAAGAATTTTAAATTAAATATT
*
32328122 -ATAAAGATTTTTAAATATAAA-ATT
1 AATAAAGAATTTTAAAT-TAAATATT
32328146 AATAA
1 AATAA
32328151 TATAAAGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
24 17 0.68
25 8 0.32
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (25 bp):
AATAAAGAATTTTAAATTAAATATT
Found at i:32328606 original size:6 final size:6
Alignment explanation
Indices: 32328577--32328615 Score: 50
Period size: 5 Copynumber: 7.2 Consensus size: 6
32328567 CACTGTTTGC
32328577 AAGC-A AAGC-A AAG-AA AAG-AA AAGCAA AAGCAA AAGCAA A
1 AAGCAA AAGCAA AAGCAA AAGCAA AAGCAA AAGCAA AAGCAA A
32328616 TTCCTTTTGG
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
5 17 0.53
6 15 0.47
ACGTcount: A:0.69, C:0.13, G:0.18, T:0.00
Consensus pattern (6 bp):
AAGCAA
Found at i:32332018 original size:5 final size:5
Alignment explanation
Indices: 32332008--32332040 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
32331998 TAATTTGCAT
*
32332008 TATTA TATTA TATTA TATTA TATTA CATTA TAT
1 TATTA TATTA TATTA TATTA TATTA TATTA TAT
32332041 CAACTTTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (5 bp):
TATTA
Found at i:32332160 original size:17 final size:18
Alignment explanation
Indices: 32332138--32332187 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 18
32332128 TAAAAATTTT
32332138 AATATATAATATAAAT-C
1 AATATATAATATAAATAC
* *
32332155 AATATATATTATACATAC
1 AATATATAATATAAATAC
*
32332173 ATTAATATAATATAA
1 AAT-ATATAATATAA
32332188 TTAATAGTTA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
17 14 0.54
18 3 0.12
19 9 0.35
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (18 bp):
AATATATAATATAAATAC
Found at i:32332226 original size:28 final size:30
Alignment explanation
Indices: 32332144--32332203 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 30
32332134 TTTTAATATA
32332144 TAATATAA-ATCAATATATATTATACATACAT
1 TAATATAATAT-AAT-TATATTATACATACAT
32332175 TAATATAATATAATTAATAGTTATACATA
1 TAATATAATATAATT-ATA-TTATACATA
32332204 TATATTTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
30 1 0.04
31 14 0.54
32 11 0.42
ACGTcount: A:0.52, C:0.07, G:0.02, T:0.40
Consensus pattern (30 bp):
TAATATAATATAATTATATTATACATACAT
Found at i:32334321 original size:19 final size:19
Alignment explanation
Indices: 32334297--32334335 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
32334287 ATATATTGAG
32334297 ATAAATATTAAATTTATAT
1 ATAAATATTAAATTTATAT
* * *
32334316 ATAAATTTTGATTTTATAT
1 ATAAATATTAAATTTATAT
32334335 A
1 A
32334336 ATTTAAATTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (19 bp):
ATAAATATTAAATTTATAT
Found at i:32344866 original size:14 final size:14
Alignment explanation
Indices: 32344844--32344877 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
32344834 TTAATTCACG
32344844 ATAAAAATAAATAA
1 ATAAAAATAAATAA
*
32344858 ATAAGAATAAATAA
1 ATAAAAATAAATAA
*
32344872 TTAAAA
1 ATAAAA
32344878 TTTATTTTAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.24
Consensus pattern (14 bp):
ATAAAAATAAATAA
Found at i:32346563 original size:30 final size:30
Alignment explanation
Indices: 32346528--32346587 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
32346518 TATTTTATTG
32346528 TTAATTTTGTTATTATTTTAAAGGAATTTA
1 TTAATTTTGTTATTATTTTAAAGGAATTTA
* *
32346558 TTAATTTTGTTATTATTTTAGAGGCATTTA
1 TTAATTTTGTTATTATTTTAAAGGAATTTA
32346588 CTTGTTAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.02, G:0.12, T:0.57
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGGAATTTA
Found at i:32347259 original size:7 final size:7
Alignment explanation
Indices: 32347249--32347273 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
32347239 TTAATAAATA
32347249 ATATTAT
1 ATATTAT
32347256 ATATTAT
1 ATATTAT
32347263 ATATTAT
1 ATATTAT
32347270 ATAT
1 ATAT
32347274 ATTAGGCTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
ATATTAT
Found at i:32348255 original size:60 final size:60
Alignment explanation
Indices: 32348188--32348319 Score: 192
Period size: 60 Copynumber: 2.2 Consensus size: 60
32348178 TTTATAAATC
32348188 TAATGATACATAAAATATTTTAGAATTTTAAATATAATAATAAATGATACTTTAAAATTT
1 TAATGATACATAAAATATTTTAGAATTTTAAATATAATAATAAATGATACTTTAAAATTT
* * * * ** **
32348248 TAATGATATATGAAATATTTTATAATTTTAAATATAATTATAAATGATGTTTTCGAATTT
1 TAATGATACATAAAATATTTTAGAATTTTAAATATAATAATAAATGATACTTTAAAATTT
32348308 TAATGATACATA
1 TAATGATACATA
32348320 GTGTTAGCAT
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
60 62 1.00
ACGTcount: A:0.46, C:0.03, G:0.07, T:0.44
Consensus pattern (60 bp):
TAATGATACATAAAATATTTTAGAATTTTAAATATAATAATAAATGATACTTTAAAATTT
Found at i:32354088 original size:29 final size:29
Alignment explanation
Indices: 32354027--32354088 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
32354017 ATACAGAGAT
* * *
32354027 GCACCGAAGTGCAATAACAAAACATAGTA
1 GCACAGAAGTGCAATAACAAAACAAAATA
* * *
32354056 GCACAGAAGTGCAATATCAGAACAAAATG
1 GCACAGAAGTGCAATAACAAAACAAAATA
32354085 GCAC
1 GCAC
32354089 TATAGTGCTT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.47, C:0.21, G:0.19, T:0.13
Consensus pattern (29 bp):
GCACAGAAGTGCAATAACAAAACAAAATA
Found at i:32359032 original size:16 final size:16
Alignment explanation
Indices: 32359011--32359043 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
32359001 TTTAAAAAGT
*
32359011 ATAAAAATATTCAAAA
1 ATAAAAATACTCAAAA
32359027 ATAAAAATACTCAAAA
1 ATAAAAATACTCAAAA
32359043 A
1 A
32359044 AATTATACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.70, C:0.09, G:0.00, T:0.21
Consensus pattern (16 bp):
ATAAAAATACTCAAAA
Found at i:32359219 original size:21 final size:20
Alignment explanation
Indices: 32359164--32359219 Score: 51
Period size: 21 Copynumber: 2.6 Consensus size: 20
32359154 AACTATTTTT
* *
32359164 AAAAATAGTAAATTTAATTAA
1 AAAAATA-TAAACTAAATTAA
32359185 AGAAAATA-AGAACTAAATTAA
1 A-AAAATATA-AACTAAATTAA
32359206 CAAAAATATAAACT
1 -AAAAATATAAACT
32359220 TCAATAACTA
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
20 1 0.03
21 20 0.69
22 8 0.28
ACGTcount: A:0.64, C:0.05, G:0.05, T:0.25
Consensus pattern (20 bp):
AAAAATATAAACTAAATTAA
Found at i:32364749 original size:14 final size:14
Alignment explanation
Indices: 32364730--32364760 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
32364720 GGTGCATGGC
32364730 TGAAATGTCAATAT
1 TGAAATGTCAATAT
32364744 TGAAATGTCAATAT
1 TGAAATGTCAATAT
32364758 TGA
1 TGA
32364761 TTGGAAGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.42, C:0.06, G:0.16, T:0.35
Consensus pattern (14 bp):
TGAAATGTCAATAT
Found at i:32366036 original size:61 final size:58
Alignment explanation
Indices: 32365941--32366114 Score: 174
Period size: 58 Copynumber: 2.9 Consensus size: 58
32365931 ACCTCTAACA
*
32365941 CTTTGATCTTGCTTACTTTCTAGAATTATTACTTATCATAACCTTATAAAAGGGATGAGCG
1 CTTTGATCTTGCTTACTTTCAAGAATTATTACTTA--ATAACCTTAT-AAAGGGATGAGCG
* * * *
32366002 CTTTGAT-TATGCTTACTTTCAAGAGTTATTACTTAATAACTTTATGAAGGGATGAAC-
1 CTTTGATCT-TGCTTACTTTCAAGAATTATTACTTAATAACCTTATAAAGGGATGAGCG
* * * ** *
32366059 ATTTCAATCTTGCTTGCTTTCAAGAATTATTA-TGTCGTATCCTTATAAAGGGATGA
1 CTTT-GATCTTGCTTACTTTCAAGAATTATTACT-TAATAACCTTATAAAGGGATGA
32366115 ACTTTTGCTT
Statistics
Matches: 95, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
57 4 0.04
58 49 0.52
59 10 0.11
60 1 0.01
61 31 0.33
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.40
Consensus pattern (58 bp):
CTTTGATCTTGCTTACTTTCAAGAATTATTACTTAATAACCTTATAAAGGGATGAGCG
Found at i:32382231 original size:56 final size:56
Alignment explanation
Indices: 32382145--32382260 Score: 169
Period size: 56 Copynumber: 2.1 Consensus size: 56
32382135 TTCCCCTGAA
* * * *
32382145 CCAACTCTCTAACACAACCTACTTTACAAGAGTACTCTAGTAGCCCACACGCTCTT
1 CCAACTCTCCAACACAACCCACTTTACAAGAGCACTCTAGCAGCCCACACGCTCTT
* * *
32382201 CCAACTCTCCAACACAACCCACTTTGCAAGAGCGCTCTAGCAGCCCACATGCTCTT
1 CCAACTCTCCAACACAACCCACTTTACAAGAGCACTCTAGCAGCCCACACGCTCTT
32382257 CCAA
1 CCAA
32382261 GTAAGCGAAG
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.29, C:0.39, G:0.10, T:0.22
Consensus pattern (56 bp):
CCAACTCTCCAACACAACCCACTTTACAAGAGCACTCTAGCAGCCCACACGCTCTT
Found at i:32392964 original size:21 final size:21
Alignment explanation
Indices: 32392922--32392971 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
32392912 TAGATAATCT
* * *
32392922 AATAAAATAATTATATAATAA
1 AATAAAAAAATAAAATAATAA
*
32392943 AATAAAAAAATAAAATATTAA
1 AATAAAAAAATAAAATAATAA
*
32392964 ATTAAAAA
1 AATAAAAA
32392972 CAACTCTTAG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (21 bp):
AATAAAAAAATAAAATAATAA
Found at i:32400539 original size:31 final size:31
Alignment explanation
Indices: 32400493--32400574 Score: 101
Period size: 31 Copynumber: 2.6 Consensus size: 31
32400483 ATTTCTTTAA
*
32400493 ATGTGTATAATTGAATCAAAAGGAAAGTTTC
1 ATGTGTATAATTGAATCAAAAGGAAAATTTC
* * * **
32400524 ATGTATATATTTGAATCATAATTAAAATTTC
1 ATGTGTATAATTGAATCAAAAGGAAAATTTC
*
32400555 ATGTGTATAATTGCATCAAA
1 ATGTGTATAATTGAATCAAA
32400575 TCAAAATTCA
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.41, C:0.07, G:0.13, T:0.38
Consensus pattern (31 bp):
ATGTGTATAATTGAATCAAAAGGAAAATTTC
Found at i:32400807 original size:23 final size:24
Alignment explanation
Indices: 32400777--32400841 Score: 59
Period size: 23 Copynumber: 2.8 Consensus size: 24
32400767 TAACTCATAA
*
32400777 TTAT-AAATTAAATTATAATATTT
1 TTATAAAATTAAATTATAATACTT
32400800 TTA-AAAATGT-AATTAT--TACTT
1 TTATAAAAT-TAAATTATAATACTT
*
32400821 TTATTAAATTATAATTATAAT
1 TTATAAAATTA-AATTATAAT
32400842 TATAATAACT
Statistics
Matches: 33, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
21 8 0.24
22 4 0.12
23 19 0.58
24 1 0.03
25 1 0.03
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (24 bp):
TTATAAAATTAAATTATAATACTT
Found at i:32402060 original size:31 final size:32
Alignment explanation
Indices: 32402019--32402082 Score: 121
Period size: 31 Copynumber: 2.0 Consensus size: 32
32402009 AATTATGGAA
32402019 TTTTACTAAATTTTATACATAAATTTTTATTT
1 TTTTACTAAATTTTATACATAAATTTTTATTT
32402051 TTTTA-TAAATTTTATACATAAATTTTTATTT
1 TTTTACTAAATTTTATACATAAATTTTTATTT
32402082 T
1 T
32402083 ATCCAATCCT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 27 0.84
32 5 0.16
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (32 bp):
TTTTACTAAATTTTATACATAAATTTTTATTT
Found at i:32403321 original size:18 final size:20
Alignment explanation
Indices: 32403300--32403340 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
32403290 ATTTTATTTT
32403300 TTTAACT-A-ATTTTTATAA
1 TTTAACTAATATTTTTATAA
*
32403318 TTTAATTAATATTTTTATAA
1 TTTAACTAATATTTTTATAA
32403338 TTT
1 TTT
32403341 TTTTATAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 6 0.30
19 1 0.05
20 13 0.65
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (20 bp):
TTTAACTAATATTTTTATAA
Found at i:32405398 original size:59 final size:59
Alignment explanation
Indices: 32405305--32405450 Score: 229
Period size: 59 Copynumber: 2.4 Consensus size: 59
32405295 ATTGATTTAT
* * *
32405305 TTTTGAATTTTTTTTGTACAAATTGTTTTTATATTGTTTCATTTAATAAAATAAAAGTTC
1 TTTTGAA-TATTTTTGTACAAATTATTTTAATATTGTTTCATTTAATAAAATAAAAGTTC
* *
32405365 TTTTGAATATTTTTGTAAAAATTATTTTAATATTGTTTCATTTAATAAAATAGAAGTTC
1 TTTTGAATATTTTTGTACAAATTATTTTAATATTGTTTCATTTAATAAAATAAAAGTTC
32405424 TTTTGAATATTTTTGTACAAATATATT
1 TTTTGAATATTTTTGTACAAAT-TATT
32405451 ACTGACTATG
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
59 68 0.86
60 11 0.14
ACGTcount: A:0.34, C:0.04, G:0.08, T:0.53
Consensus pattern (59 bp):
TTTTGAATATTTTTGTACAAATTATTTTAATATTGTTTCATTTAATAAAATAAAAGTTC
Found at i:32407017 original size:18 final size:17
Alignment explanation
Indices: 32406977--32407019 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
32406967 CTAACAATAG
32406977 TAATAATAAAATACTAA
1 TAATAATAAAATACTAA
* *
32406994 TAAATAATAGATATAGTAA
1 T-AATAATA-AAATACTAA
32407013 TAATAAT
1 TAATAAT
32407020 CTTTTTGAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 1 0.05
18 13 0.59
19 8 0.36
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (17 bp):
TAATAATAAAATACTAA
Found at i:32407713 original size:3 final size:3
Alignment explanation
Indices: 32407669--32407694 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
32407659 TACTAATACG
32407669 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
32407695 GAGATGGCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:32407725 original size:15 final size:15
Alignment explanation
Indices: 32407703--32407736 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
32407693 TAGAGATGGC
*
32407703 AATA-AATAATAGTA
1 AATATAATAATAGAA
32407717 AATATAATAATAGAA
1 AATATAATAATAGAA
32407732 AATAT
1 AATAT
32407737 CAAAATTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.22
15 14 0.78
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (15 bp):
AATATAATAATAGAA
Found at i:32408893 original size:24 final size:23
Alignment explanation
Indices: 32408849--32408930 Score: 112
Period size: 23 Copynumber: 3.6 Consensus size: 23
32408839 TTAGTTGGGC
*
32408849 TAATGTAATTGGGTTTTGGGGTT
1 TAATGTAAATGGGTTTTGGGGTT
*
32408872 TAATGTAAAATGGGTTTGGGGGTT
1 TAATGT-AAATGGGTTTTGGGGTT
* *
32408896 TAATGTAAATGGATTTTAGGGTT
1 TAATGTAAATGGGTTTTGGGGTT
32408919 T-ATGTAAATGGG
1 TAATGTAAATGGG
32408931 CCAAAGTTGT
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
22 10 0.19
23 21 0.40
24 21 0.40
ACGTcount: A:0.26, C:0.00, G:0.33, T:0.41
Consensus pattern (23 bp):
TAATGTAAATGGGTTTTGGGGTT
Found at i:32409995 original size:11 final size:11
Alignment explanation
Indices: 32409966--32410018 Score: 54
Period size: 11 Copynumber: 4.9 Consensus size: 11
32409956 TGACCTTTCC
32409966 AAGGTATGGG-
1 AAGGTATGGGA
*
32409976 TAGGTATGGGA
1 AAGGTATGGGA
* *
32409987 AATGTATGGGC
1 AAGGTATGGGA
*
32409998 AAGGTATGGGC
1 AAGGTATGGGA
*
32410009 AAGGAATGGG
1 AAGGTATGGG
32410019 TATATTCTAA
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
10 9 0.25
11 27 0.75
ACGTcount: A:0.30, C:0.04, G:0.45, T:0.21
Consensus pattern (11 bp):
AAGGTATGGGA
Found at i:32414087 original size:18 final size:18
Alignment explanation
Indices: 32414064--32414120 Score: 69
Period size: 18 Copynumber: 3.2 Consensus size: 18
32414054 CCCAACTACT
32414064 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
* * **
32414082 GTATACATAAATAGTGTC
1 GTATACGTGAATAGTACC
*
32414100 GTATACGTGAATAGCACC
1 GTATACGTGAATAGTACC
32414118 GTA
1 GTA
32414121 AACGGTCGTA
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.28
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:32414668 original size:10 final size:11
Alignment explanation
Indices: 32414652--32414693 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
32414642 TGACCTTTCC
32414652 AAGGTATGGG-
1 AAGGTATGGGA
*
32414662 TAGGTATGGGA
1 AAGGTATGGGA
*
32414673 AAGGTATGGGC
1 AAGGTATGGGA
*
32414684 AAGGAATGGG
1 AAGGTATGGG
32414694 TATATTCTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
10 9 0.33
11 18 0.67
ACGTcount: A:0.31, C:0.02, G:0.48, T:0.19
Consensus pattern (11 bp):
AAGGTATGGGA
Found at i:32418196 original size:105 final size:105
Alignment explanation
Indices: 32417980--32418202 Score: 277
Period size: 104 Copynumber: 2.1 Consensus size: 105
32417970 TGCCCATGTT
* * * * *
32417980 CTTGCCCGTGTGGCTCATACGGCCTAGGCACATGCCTATGTCCTCTGCCCGTGTAGCTTTAAAGC
1 CTTGCCCGTGTGACTCACACGGCCTAGGCACACGCCTATGTCCTCTGCCCATCTAGCTTTAAAGC
* *
32418045 ATAAACAGTGAGTTACACGGCCTAAACACACGCCTGTGTC
66 ACAAACAGTGAGTTACACGGCCTAAACACACACCTGTGTC
* * * * * *
32418085 CCTGCCCGTGTGACTCACACGGCCTGGGCACACGCCTATGTCCT-TGTCCATCTGGTTTTAAATC
1 CTTGCCCGTGTGACTCACACGGCCTAGGCACACGCCTATGTCCTCTGCCCATCTAGCTTTAAAGC
* * *
32418149 ACAAATAGTGAGTTACACGGCCTAGACACACATCTGTGTC
66 ACAAACAGTGAGTTACACGGCCTAAACACACACCTGTGTC
*
32418189 CTTTGCCCATGTGA
1 C-TTGCCCGTGTGA
32418203 ACCTTACACT
Statistics
Matches: 99, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
104 50 0.51
105 49 0.49
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.26
Consensus pattern (105 bp):
CTTGCCCGTGTGACTCACACGGCCTAGGCACACGCCTATGTCCTCTGCCCATCTAGCTTTAAAGC
ACAAACAGTGAGTTACACGGCCTAAACACACACCTGTGTC
Found at i:32419499 original size:31 final size:31
Alignment explanation
Indices: 32419461--32419522 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
32419451 GGTAGAGGAG
32419461 AAGAAAATTCACTATGTCAAATTCGAATGAT
1 AAGAAAATTCACTATGTCAAATTCGAATGAT
*
32419492 AAGAAAATTCACTATGTCGAATTCGAATGAT
1 AAGAAAATTCACTATGTCAAATTCGAATGAT
32419523 TACAAGGAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.44, C:0.13, G:0.15, T:0.29
Consensus pattern (31 bp):
AAGAAAATTCACTATGTCAAATTCGAATGAT
Found at i:32422620 original size:18 final size:19
Alignment explanation
Indices: 32422599--32422634 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
32422589 TATTACGTTC
*
32422599 TATTATTTTA-TTTATTTT
1 TATTATCTTATTTTATTTT
32422617 TATTATCTTATTTTATTT
1 TATTATCTTATTTTATTT
32422635 GGTTTTTACC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (19 bp):
TATTATCTTATTTTATTTT
Found at i:32422650 original size:23 final size:21
Alignment explanation
Indices: 32422598--32422653 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 21
32422588 TTATTACGTT
32422598 CTATTATTTTATTTATTTTTA
1 CTATTATTTTATTTATTTTTA
* *
32422619 TTATCTTATTTTATTTGGTTTTTA
1 CTA--TTATTTTATTT-ATTTTTA
32422643 CCTATTATTTT
1 -CTATTATTTT
32422654 TCTTTTTATA
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
21 2 0.07
23 18 0.64
24 6 0.21
25 2 0.07
ACGTcount: A:0.20, C:0.07, G:0.04, T:0.70
Consensus pattern (21 bp):
CTATTATTTTATTTATTTTTA
Found at i:32423622 original size:20 final size:19
Alignment explanation
Indices: 32423578--32423622 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
32423568 TTTACAATCC
32423578 TTTTGTTGCATTTCATCTG
1 TTTTGTTGCATTTCATCTG
32423597 TCTTTGTTGCGATCTTCATC-G
1 T-TTTGTTGC-AT-TTCATCTG
32423618 TTTTG
1 TTTTG
32423623 GTTTATATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
19 1 0.04
20 12 0.52
21 4 0.17
22 6 0.26
ACGTcount: A:0.09, C:0.18, G:0.18, T:0.56
Consensus pattern (19 bp):
TTTTGTTGCATTTCATCTG
Found at i:32433798 original size:14 final size:14
Alignment explanation
Indices: 32433779--32433811 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
32433769 ATGGTCATCA
*
32433779 AGAAGTTTGTGTAG
1 AGAAGTTTGTGCAG
32433793 AGAAGTTTGTGCAG
1 AGAAGTTTGTGCAG
32433807 AGAAG
1 AGAAG
32433812 CTCATGCTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.33, C:0.03, G:0.36, T:0.27
Consensus pattern (14 bp):
AGAAGTTTGTGCAG
Found at i:32434281 original size:15 final size:15
Alignment explanation
Indices: 32434261--32434299 Score: 78
Period size: 15 Copynumber: 2.6 Consensus size: 15
32434251 GACATTCTGT
32434261 ATTCATGCAAATATC
1 ATTCATGCAAATATC
32434276 ATTCATGCAAATATC
1 ATTCATGCAAATATC
32434291 ATTCATGCA
1 ATTCATGCA
32434300 TATCTAGTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.33
Consensus pattern (15 bp):
ATTCATGCAAATATC
Found at i:32434876 original size:44 final size:44
Alignment explanation
Indices: 32434483--32435020 Score: 255
Period size: 44 Copynumber: 11.7 Consensus size: 44
32434473 TGTAGCAAGT
* * * * *
32434483 CTTACCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGTTA-TAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAA
* * * *
32434526 CTTATCTCCCTGAA-TTCGCATTGGAGTAGATCGAAGATAGAAAA
1 CTTATCTCCCTGAAGTT-GCAGTGGAGCAGATTGAAGATAGCAAA
* * * * ** * *
32434570 TCTTATCTCTCTAAAGTTGTAGTAGAATAGATTAAAGATA-AAAA
1 -CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAA
* * * * * *
32434614 TCTTATTTCTCTGAAGTTGTAGTAGATCAGATTAAAGCTACAAATTA-CAAA
1 -CTTATCTCCCTGAAGTTGCAGTGGAGCAGATT---G--A-AGA-TAGCAAA
* * * * * *
32434665 CCTTATTTCCCTGAAGTCGCAGTGGAGCAGGTTAAAAATAACAAA
1 -CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAA
* * * * * *
32434710 TCTTATCTCCTTGAAATTACAGTAGAGTAGATTGAAGTTA-CAAA
1 -CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAA
* * *
32434754 TCTCATAC-CCCTGAAGTTGCAGTGTGA-CGGATTGAAGTTATTATAGCGAAT
1 -CTTAT-CTCCCTGAAGTTGCAGTG-GAGCAGATTGAAG-----ATAGC-AAA
** * * * *
32434805 CTTATCTCTTTAAAGTTGCAGTAGAGCAGATTAAAGCTA-CAAA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAA
** *
32434848 CTTTATCTCTATGAAGTTGTAGTGGAGCAGATTGAAGATAGCAAA
1 C-TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAA
* * *
32434893 CCTTATTTCCCTGAAGTTACAGTGGAGCAGATTGAAGATAGCAAT
1 -CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAA
* * *
32434938 CTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCGACAAGTTGCAAA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA--G---A-TAGCAAA
* *
32434988 TCCTATCTCCCTGAAGTTGCAGTGGAGCGGATT
1 -CTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
32435021 AAAATGATGA
Statistics
Matches: 383, Mismatches: 79, Indels: 58
0.74 0.15 0.11
Matches are distributed among these distances:
42 2 0.01
43 35 0.09
44 132 0.34
45 109 0.28
46 5 0.01
49 7 0.02
50 32 0.08
51 61 0.16
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.30
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAA
Found at i:32434952 original size:89 final size:88
Alignment explanation
Indices: 32434666--32434973 Score: 276
Period size: 89 Copynumber: 3.4 Consensus size: 88
32434656 AATTACAAAC
* * * * * *
32434666 CTTATTTCCCTGAAGTCGCAGTGGAGCAGGTTAAAAATAACAAATCTTATCTCCTTGAAATTACA
1 CTTATTTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATCTCCTTGAAGTTACA
* *
32434731 GTAGAGTAGATTGAAGTTACAAAT
66 GTAGAGCAGATTGAAGATAC-AAT
* ** * * * *
32434755 CTCATACCCCTGAAGTTGCAGTGTGA-CGGATTGAAGTTATTATAGCGAATCTTATCTCTTTAAA
1 CTTATTTCCCTGAAGTTGCAGTG-GAGCAGATTGAAG-----ATAGCAAATCTTATCTCCTTGAA
* * * *
32434819 GTTGCAGTAGAGCAGATTAAAGCTACAAA
60 GTTACAGTAGAGCAGATTGAAGATACAAT
* ** * * * *
32434848 CTTTATCTCTATGAAGTTGTAGTGGAGCAGATTGAAGATAGCAAACCTTATTTCCCTGAAGTTAC
1 C-TTATTTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATCTCCTTGAAGTTAC
*
32434913 AGTGGAGCAGATTGAAGATAGCAAT
65 AGTAGAGCAGATTGAAGATA-CAAT
*
32434938 CTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAG
1 CTTATTTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
32434974 CGACAAGTTG
Statistics
Matches: 169, Mismatches: 41, Indels: 18
0.74 0.18 0.08
Matches are distributed among these distances:
89 93 0.55
90 6 0.04
93 5 0.03
94 65 0.38
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (88 bp):
CTTATTTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATCTCCTTGAAGTTACA
GTAGAGCAGATTGAAGATACAAT
Found at i:32436659 original size:3 final size:3
Alignment explanation
Indices: 32436632--32436680 Score: 55
Period size: 3 Copynumber: 16.0 Consensus size: 3
32436622 CAAACTTTAG
* *
32436632 ATT ATTT ATT ATT -TAT ATT AAT ATT ATT ATC ATT ATT ATT ATT ATT
1 ATT A-TT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
32436678 ATT
1 ATT
32436681 TTTAAACCAT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
2 1 0.03
3 34 0.87
4 4 0.10
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:32438728 original size:24 final size:24
Alignment explanation
Indices: 32438701--32438754 Score: 108
Period size: 24 Copynumber: 2.2 Consensus size: 24
32438691 GTGTTAAAAA
32438701 TTTTAATCAACCGAAAATTAATAT
1 TTTTAATCAACCGAAAATTAATAT
32438725 TTTTAATCAACCGAAAATTAATAT
1 TTTTAATCAACCGAAAATTAATAT
32438749 TTTTAA
1 TTTTAA
32438755 CAATAACATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.44, C:0.11, G:0.04, T:0.41
Consensus pattern (24 bp):
TTTTAATCAACCGAAAATTAATAT
Found at i:32440452 original size:18 final size:18
Alignment explanation
Indices: 32440417--32440456 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 18
32440407 GAAATATTTA
*
32440417 TTTTGATGTTTTTAATAT
1 TTTTGATGTTTATAATAT
32440435 TTTTGATGTATTATATATAT
1 TTTTGATGT-TTATA-ATAT
32440455 TT
1 TT
32440457 AAAAATTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 9 0.47
19 4 0.21
20 6 0.32
ACGTcount: A:0.25, C:0.00, G:0.10, T:0.65
Consensus pattern (18 bp):
TTTTGATGTTTATAATAT
Found at i:32441199 original size:38 final size:38
Alignment explanation
Indices: 32441147--32441256 Score: 116
Period size: 38 Copynumber: 2.9 Consensus size: 38
32441137 GTGGAATGCC
* *
32441147 ACATAGATTATTAAATTTAATAATTTTAAAAAATTAAA
1 ACATATATTTTTAAATTTAATAATTTTAAAAAATTAAA
* * *
32441185 ACATATATTTTTAAAATATAAT-TTTTTAAAAAACTTATA
1 ACATATATTTTT-AAATTTAATAATTTTAAAAAA-TTAAA
* * *
32441224 ACATATATTTTGAATTTTTA-AATTTTAAAAAAT
1 ACATATATTTTTAAATTTAATAATTTTAAAAAAT
32441257 AATTAATTGT
Statistics
Matches: 59, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
37 1 0.02
38 35 0.59
39 23 0.39
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.45
Consensus pattern (38 bp):
ACATATATTTTTAAATTTAATAATTTTAAAAAATTAAA
Found at i:32441255 original size:39 final size:37
Alignment explanation
Indices: 32441168--32441256 Score: 106
Period size: 39 Copynumber: 2.4 Consensus size: 37
32441158 TAAATTTAAT
*
32441168 AATTTTAAAAAATTAAAACATATATTTTTAAAATATA
1 AATTTTAAAAAATTAAAACATATATTTTGAAAATATA
* * ** *
32441205 ATTTTTTAAAAAACTTATAACATATATTTTGAATTTTTA
1 A-ATTTTAAAAAA-TTAAAACATATATTTTGAAAATATA
32441244 AATTTTAAAAAAT
1 AATTTTAAAAAAT
32441257 AATTAATTGT
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
37 2 0.05
38 20 0.47
39 21 0.49
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (37 bp):
AATTTTAAAAAATTAAAACATATATTTTGAAAATATA
Found at i:32448000 original size:44 final size:44
Alignment explanation
Indices: 32447944--32448807 Score: 355
Period size: 44 Copynumber: 19.0 Consensus size: 44
32447934 TCGTAACTTA
* * *
32447944 TAGCTTTC-ATCTGTTCTACTGTAACTTCAGGGAAATAAGATTTG
1 TAGC-TTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGATTTG
* * * * *
32447988 TAGCTTAAATCTGAC-CCACTGCAAATTTAGGGAGATAATATTTG
1 TAGCTTCAATCTG-CTCCACTGCAACTTCAGGGAAATAAGATTTG
* ** * *
32448032 TAGCTTTAAAT-TGCTTTACTGTAACTTCAGGGAGCTAA-AATTTGTAACTTG
1 TAGC-TTCAATCTGCTCCACTGCAACTTCAGGGA---AATAA---G--ATTTG
* * * * *
32448083 TAGCTTTAATCTGTTCTA-TCGCAACTTTAGGGAAATGAGATTTG
1 TAGCTTCAATCTGCTCCACT-GCAACTTCAGGGAAATAAGATTTG
* **
32448127 CTATTCTTCAATCTGCTCCACTGCAACTTCAGGGGGATAAGATTTGCAATTTG
1 -TA-GCTTCAATCTGCTCCACTGCAACTTCA--GGG--AA-ATAAG--ATTTG
* * * * *
32448180 TAGTTTTAATCTGTTCCACTACAACTTCAGGGAAATAAGATTCG
1 TAGCTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGATTTG
* * * ** *
32448224 TTATCTTCAATATGCTCTACTGCAACTTCACGGAGATGAGATTTGTAACTTG
1 -TAGCTTCAATCTGCTCCACTGCAACTTCA-GG-GA--A-ATAAG--ATTTG
* * * * * * **
32448276 TAGCTTTAATTTGTTCCACTGTAACTTAAAGGAAATAAGATTCAC
1 TAGCTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGATT-TG
** * * *
32448321 TATTTTCAATCTGCTCTATTGCAACTTCAGGGAAATAGGATTTG
1 TAGCTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGATTTG
* ** * *
32448365 TAACTTCAATCTGCTCCACTATAACTTCAGGGAGATAAGATTCG
1 TAGCTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGATTTG
* * * * *
32448409 TTATCTTCAATTTACTCCACTACAACTTCA-AGAAGATAAGATTTG
1 -TAGCTTCAATCTGCTCCACTGCAACTTCAGGGAA-ATAAGATTTG
* * * * **
32448454 TGGCTTTAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTCACCAC
1 TAGCTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGATT----TG
* **** * * *
32448502 AATGACTTCAATCTGCTTTGTTGTAACTTCAGAGAGATAAGATTTG
1 TA-G-CTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGATTTG
* * * * * * *
32448548 CTATCTTAAATTTGTTCCACTGC-TCTTCAGGGAGATAAGACTTG
1 -TAGCTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGATTTG
* * * * *
32448592 TAACTTCAA-CTTGCTCCACTGCAACTTTAGGGAGATAAGGTTTA
1 TAGCTTCAATC-TGCTCCACTGCAACTTCAGGGAAATAAGATTTG
* * * * ** *
32448636 TAGCTTTAATATGCTCTACTGCAATTTCAAAGAGATAAGATTTG
1 TAGCTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGATTTG
* * * * *
32448680 CTATCTTCAATCTGTTCCACTGCAACTTCAAGGAGATAAGACTTG
1 -TAGCTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGATTTG
* * * * *
32448725 TAACTTCAA-C--CTCCACTACATCTTCAGGGAGATAAGATTAG
1 TAGCTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGATTTG
* * * * *
32448766 TGGCTTCAATCTACTCTACTGCAACTTCAAGGAGATAAGATT
1 TAGCTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGATT
32448808 CGCGATAATA
Statistics
Matches: 603, Mismatches: 166, Indels: 102
0.69 0.19 0.12
Matches are distributed among these distances:
41 32 0.05
42 1 0.00
43 21 0.03
44 229 0.38
45 144 0.24
46 31 0.05
47 8 0.01
48 5 0.01
49 8 0.01
50 43 0.07
51 71 0.12
52 5 0.01
53 5 0.01
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (44 bp):
TAGCTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGATTTG
Found at i:32448277 original size:96 final size:96
Alignment explanation
Indices: 32448043--32448807 Score: 428
Period size: 89 Copynumber: 8.3 Consensus size: 96
32448033 AGCTTTAAAT
* * * * * *
32448043 TGCTTTACTGTAACTTCAGGGAGCTAAAATTTGTAACTTGTAGCTTTAATCTGTTCTA-TCGCAA
1 TGCTCTACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACT-ACAA
* * *
32448107 CTTTAGGGAAATGAGATTTGCTATTCTTCAATC
65 CTTCAGGGAAATAAGATTCGCTA-TCTTCAATC
* * * * *
32448140 TGCTCCACTGCAACTTCAGGGGGATAAGATTTGCAATTTGTAGTTTTAATCTGTTCCACTACAAC
1 TGCTCTACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTACAAC
* *
32448205 TTCAGGGAAATAAGATTCGTTATCTTCAATA
66 TTCAGGGAAATAAGATTCGCTATCTTCAATC
* * * **
32448236 TGCTCTACTGCAACTTCACGGAGATGAGATTTGTAACTTGTAGCTTTAATTTGTTCCACTGTAAC
1 TGCTCTACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTACAAC
* * * *
32448301 TTAAAGGAAATAAGATTCACTATTTTCAATC
66 TTCAGGGAAATAAGATTCGCTATCTTCAATC
* * * * *
32448332 TGCTCTATTGCAACTTCAGGGAAATAGGATTTGTAAC-T-T--C---AATCTGCTCCACTATAAC
1 TGCTCTACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTACAAC
* * *
32448390 TTCAGGGAGATAAGATTCGTTATCTTCAATT
66 TTCAGGGAAATAAGATTCGCTATCTTCAATC
* * * * * * *
32448421 TACTCCACTACAACTTCAAGAAGATAAGATTTG-----TG--GCTTTAATCTGCTCCACTGCAAC
1 TGCTCTACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTACAAC
* * * *
32448479 TTCAAGGAGATAAGATTCACCACAATGACTTCAATC
66 TTCAGGGAAATAAGATT---CGCTAT--CTTCAATC
* ** * * * * * * *
32448515 TGCTTTGTTGTAACTTCAGAGAGATAAGATTTG---C---TATCTTAAATTTGTTCCACTGC-TC
1 TGCTCTACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTACAAC
* *
32448573 TTCAGGGAGATAAGACTT-G-TAACTTCAA-C
66 TTCAGGGAAATAAGA-TTCGCTATCTTCAATC
* * * * * * *
32448602 TTGCTCCACTGCAACTTTAGGGAGATAAG----GT---TTATAGCTTTAATATGCTCTACTGCAA
1 -TGCTCTACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTACAA
* ** * *
32448660 TTTCAAAGAGATAAGATTTGCTATCTTCAATC
65 CTTCAGGGAAATAAGATTCGCTATCTTCAATC
* * * * * *
32448692 TGTTCCACTGCAACTTCAAGGAGATAAGACTTGTAAC-T-T--C---AA-C--CTCCACTACATC
1 TGCTCTACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTACAAC
* * **
32448747 TTCAGGGAGATAAGATTAG-TGGCTTCAATC
66 TTCAGGGAAATAAGATTCGCTATCTTCAATC
* *
32448777 TACTCTACTGCAACTTCAAGGAGATAAGATT
1 TGCTCTACTGCAACTTCAGGGAGATAAGATT
32448808 CGCGATAATA
Statistics
Matches: 522, Mismatches: 115, Indels: 74
0.73 0.16 0.10
Matches are distributed among these distances:
84 1 0.00
85 37 0.07
86 25 0.05
87 20 0.04
88 41 0.08
89 131 0.25
90 2 0.00
92 5 0.01
93 2 0.00
94 47 0.09
95 20 0.04
96 120 0.23
97 70 0.13
98 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (96 bp):
TGCTCTACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTACAAC
TTCAGGGAAATAAGATTCGCTATCTTCAATC
Found at i:32448795 original size:130 final size:130
Alignment explanation
Indices: 32448526--32448807 Score: 379
Period size: 130 Copynumber: 2.2 Consensus size: 130
32448516 GCTTTGTTGT
* * * *
32448526 AACTTCAGAGAGATAAGATTTGCTATCTTAAATTTGTTCCACTGCTCTTCAGGGAGATAAGACTT
1 AACTTCAAAGAGATAAGATTTGCTATCTTAAATCTGTTCCACTGCACTTCAAGGAGATAAGACTT
* * * * *
32448591 GTAACTTCAACTTGCTCCACTGCAACTTTAGGGAGATAAGGTTTATAGCTTTAATATGCTCTACT
66 GTAACTTCAAC-T-CTCCACTACAACTTCAGGGAGATAAGGATTATAGCTTCAATATACTCTACT
32448656 GC
129 GC
* *
32448658 AATTTCAAAGAGATAAGATTTGCTATCTTCAATCTGTTCCACTGCAACTTCAAGGAGATAAGACT
1 AACTTCAAAGAGATAAGATTTGCTATCTTAAATCTGTTCCACTGC-ACTTCAAGGAGATAAGACT
* * *
32448723 TGTAACTTCAAC-CTCCACTACATCTTCAGGGAGATAA-GATTAGTGGCTTCAATCTACTCTACT
65 TGTAACTTCAACTCTCCACTACAACTTCAGGGAGATAAGGATTA-TAGCTTCAATATACTCTACT
32448786 GC
129 GC
*
32448788 AACTTCAAGGAGATAAGATT
1 AACTTCAAAGAGATAAGATT
32448808 CGCGATAATA
Statistics
Matches: 132, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
129 4 0.03
130 58 0.44
132 41 0.31
133 29 0.22
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (130 bp):
AACTTCAAAGAGATAAGATTTGCTATCTTAAATCTGTTCCACTGCACTTCAAGGAGATAAGACTT
GTAACTTCAACTCTCCACTACAACTTCAGGGAGATAAGGATTATAGCTTCAATATACTCTACTGC
Found at i:32456967 original size:19 final size:20
Alignment explanation
Indices: 32456935--32456989 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 20
32456925 GGGTCTTTTT
* *
32456935 ATGAAATTTAATGCATATG-
1 ATGAAATGTAATGCAAATGC
*
32456954 ATGCAATGTAATGCAAATGC
1 ATGAAATGTAATGCAAATGC
32456974 ATGAAATG-AATGCAAA
1 ATGAAATGTAATGCAAA
32456990 AAGAGGCATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
19 24 0.77
20 7 0.23
ACGTcount: A:0.45, C:0.09, G:0.18, T:0.27
Consensus pattern (20 bp):
ATGAAATGTAATGCAAATGC
Found at i:32457409 original size:97 final size:97
Alignment explanation
Indices: 32457243--32457438 Score: 392
Period size: 97 Copynumber: 2.0 Consensus size: 97
32457233 AAGAACGGTG
32457243 AAGTTGTTCTTTCCAACGCTCGTTGTTTGCTTCAAGGAGTTCAACTCGGAGTTCATAATTTTGTA
1 AAGTTGTTCTTTCCAACGCTCGTTGTTTGCTTCAAGGAGTTCAACTCGGAGTTCATAATTTTGTA
32457308 ATGAGGTCTCGAGCTCTTTTTGATAAACCATA
66 ATGAGGTCTCGAGCTCTTTTTGATAAACCATA
32457340 AAGTTGTTCTTTCCAACGCTCGTTGTTTGCTTCAAGGAGTTCAACTCGGAGTTCATAATTTTGTA
1 AAGTTGTTCTTTCCAACGCTCGTTGTTTGCTTCAAGGAGTTCAACTCGGAGTTCATAATTTTGTA
32457405 ATGAGGTCTCGAGCTCTTTTTGATAAACCATA
66 ATGAGGTCTCGAGCTCTTTTTGATAAACCATA
32457437 AA
1 AA
32457439 TTTGATGCTC
Statistics
Matches: 99, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
97 99 1.00
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.38
Consensus pattern (97 bp):
AAGTTGTTCTTTCCAACGCTCGTTGTTTGCTTCAAGGAGTTCAACTCGGAGTTCATAATTTTGTA
ATGAGGTCTCGAGCTCTTTTTGATAAACCATA
Found at i:32457649 original size:13 final size:13
Alignment explanation
Indices: 32457631--32457657 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
32457621 GAAGTAATCG
32457631 CACACGGGCGTGT
1 CACACGGGCGTGT
32457644 CACACGGGCGTGT
1 CACACGGGCGTGT
32457657 C
1 C
32457658 CCTATTGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:32458784 original size:3 final size:3
Alignment explanation
Indices: 32458776--32458806 Score: 53
Period size: 3 Copynumber: 10.0 Consensus size: 3
32458766 GTAATTTAAT
32458776 TTA TTA TTA TTA TTA TTA TTA TTA TTTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA
32458807 ATTTACTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 24 0.89
4 3 0.11
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:32470264 original size:51 final size:50
Alignment explanation
Indices: 32470105--32470261 Score: 235
Period size: 51 Copynumber: 3.1 Consensus size: 50
32470095 ACTTCTGATC
*
32470105 AGTGACAAGTGATAAGTGGTAGCCTCAA-CTACACTTATCTGATCAGTGATA
1 AGTGACAAGTGATAAGTGGTAG-CT-AAGCTACACTTATCTGATCAGTGACA
* * *
32470156 AGTGACAAATGATAAGTGGTAGCTTAGCTACTCTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTAAGCTACACTTATCTGATCAGTGACA
*
32470206 AGTGATAAGTGATAAGTGGTAGCTAAAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCT-AAGCTACACTTATCTGATCAGTGACA
32470257 AGTGA
1 AGTGA
32470262 TAAATGTGAT
Statistics
Matches: 96, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
49 1 0.01
50 45 0.47
51 50 0.52
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28
Consensus pattern (50 bp):
AGTGACAAGTGATAAGTGGTAGCTAAGCTACACTTATCTGATCAGTGACA
Found at i:32475488 original size:17 final size:18
Alignment explanation
Indices: 32475466--32475499 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
32475456 TATTTATTGT
*
32475466 TTTATATATTT-ATATTA
1 TTTATACATTTCATATTA
32475483 TTTATACATTTCATATT
1 TTTATACATTTCATATT
32475500 TACGATGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTATACATTTCATATTA
Found at i:32475558 original size:16 final size:18
Alignment explanation
Indices: 32475533--32475565 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
32475523 TTTATTATAT
32475533 TTTTACTATA-ATATAAA
1 TTTTACTATATATATAAA
32475550 TTTTA-TATATATATAA
1 TTTTACTATATATATAA
32475566 CTTGATATCG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (18 bp):
TTTTACTATATATATAAA
Found at i:32477014 original size:9 final size:10
Alignment explanation
Indices: 32476972--32477029 Score: 57
Period size: 10 Copynumber: 5.6 Consensus size: 10
32476962 CTTATTTTCA
32476972 TATTATATAT
1 TATTATATAT
*
32476982 TATATAAGTATTT
1 TAT-T-A-TATAT
32476995 TATTATATAT
1 TATTATATAT
32477005 TATT-TATAT
1 TATTATATAT
32477014 TATTAT-TATT
1 TATTATATA-T
32477024 TATTAT
1 TATTAT
32477030 TTTTCACAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
9 11 0.27
10 19 0.46
11 2 0.05
12 2 0.05
13 7 0.17
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (10 bp):
TATTATATAT
Found at i:32477020 original size:15 final size:16
Alignment explanation
Indices: 32476972--32477026 Score: 69
Period size: 15 Copynumber: 3.4 Consensus size: 16
32476962 CTTATTTTCA
*
32476972 TATTATATATTATATAAG
1 TATT-TATATTATAT-AT
32476990 TATTT-TATTATATAT
1 TATTTATATTATATAT
32477005 TATTTATATTAT-TAT
1 TATTTATATTATATAT
32477020 TATTTAT
1 TATTTAT
32477027 TATTTTTCAC
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
15 16 0.46
16 14 0.40
17 1 0.03
18 4 0.11
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (16 bp):
TATTTATATTATATAT
Found at i:32477026 original size:19 final size:19
Alignment explanation
Indices: 32476971--32477027 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 19
32476961 CCTTATTTTC
* **
32476971 ATATTATATATTATATAAGT
1 ATATTAT-TATTATTTATTT
*
32476991 ATTTTATTA-TATATTATTT
1 ATATTATTATTAT-TTATTT
32477010 ATATTATTATTATTTATT
1 ATATTATTATTATTTATT
32477028 ATTTTTCACA
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
18 3 0.10
19 18 0.60
20 9 0.30
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (19 bp):
ATATTATTATTATTTATTT
Found at i:32488689 original size:206 final size:206
Alignment explanation
Indices: 32488324--32488881 Score: 848
Period size: 206 Copynumber: 2.7 Consensus size: 206
32488314 TAGCAGATCT
*
32488324 TACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAACCATAA
1 TACTGAAGC-AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAACCATAG
32488389 CTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTC
65 CTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTC
* * ** **
32488454 AGAGAACAAATCGAAGTTTGTCATCTCCATATTAGACGGAGAGCAGACACATAGCAGGTCTGGCC
130 AGAGAACAAATCAAAGTTTGGCATCTCCATATTAGACGGAGAGCAGACACATAGCAAATCTAACC
*
32488519 TTCATG-TGTTTA
195 TTCA-GATGATTA
* * * *
32488531 TACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTATAAGGAACAAATCGAAATCATAGC
1 TACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAACCATAGC
* *
32488596 TGATTTGGCTTTCATGTGCTTACGATGAAACAAATCTAAGATGATTTGGCATCTCTGTATTGTCA
66 TGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCA
* * * *
32488661 GAGAACAAATTAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAAATCTAACCT
131 GAGAACAAATCAAAGTTTGGCATCTCCATATTAGACGGAGAGCAGACACATAGCAAATCTAACCT
32488726 TCAGATGATTA
196 TCAGATGATTA
* * * * **
32488737 GACTGAAGCAGATCCAAGATGGTTCGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGGCATAGC
1 TACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAACCATAGC
* * *
32488802 TGATTTGGTTTTCGCGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCA
66 TGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCA
32488867 GAGAACAAATCAAAG
131 GAGAACAAATCAAAG
32488882 AAGCAGATTT
Statistics
Matches: 317, Mismatches: 33, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
205 1 0.00
206 307 0.97
207 9 0.03
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (206 bp):
TACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAACCATAGC
TGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCA
GAGAACAAATCAAAGTTTGGCATCTCCATATTAGACGGAGAGCAGACACATAGCAAATCTAACCT
TCAGATGATTA
Found at i:32489290 original size:106 final size:106
Alignment explanation
Indices: 32489100--32489310 Score: 386
Period size: 106 Copynumber: 2.0 Consensus size: 106
32489090 AGAAAATAAA
*
32489100 TGGGCAAATAAATATTAATTTATTAAGAGTCCATTTACAAAGCACCAAAATATAACAGAGCCCAA
1 TGGGCAAATAAATATTAATTTATTAAGAGTCCATTTACAAAGCACCAAAATACAACAGAGCCCAA
* *
32489165 ACATTTAATCCGGTTGCTACCCGTGTACTCATTCACATCCG
66 ACATTTAATCCGGTCGCTACCCGTGTACCCATTCACATCCG
*
32489206 TGGGCAAATAAATATTAATTTATTAAGAGTCCATTTACAAAGCACCAAAATACAATAGAGCCCAA
1 TGGGCAAATAAATATTAATTTATTAAGAGTCCATTTACAAAGCACCAAAATACAACAGAGCCCAA
32489271 ACATTTAATCCGGTCGCTACCCGTGTACCCATTCACATCC
66 ACATTTAATCCGGTCGCTACCCGTGTACCCATTCACATCC
32489311 AAAGCCCAAT
Statistics
Matches: 101, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
106 101 1.00
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.27
Consensus pattern (106 bp):
TGGGCAAATAAATATTAATTTATTAAGAGTCCATTTACAAAGCACCAAAATACAACAGAGCCCAA
ACATTTAATCCGGTCGCTACCCGTGTACCCATTCACATCCG
Found at i:32490214 original size:397 final size:399
Alignment explanation
Indices: 32489443--32490241 Score: 1361
Period size: 397 Copynumber: 2.0 Consensus size: 399
32489433 TCATATCCGG
***
32489443 AGATCTTGTGATTACCTGCAAAAAAGGAAGAGAAAATTGCAAAGGAAAGAAGCAAAACACGGCAA
1 AGATCTTGTGATTACCTGCAAAAAAGGAAGAGAAAACAACAAAGGAAAGAAGCAAAACACGGCAA
* * *
32489508 GAAATAGGAAAGATTTTCATAACAAATTTGTATTGGTTAACAGTGGCTATAAAGCCCGGATCTAA
66 GAAATAGGAAAGATTTTCATAACAAATTTGTATCGGTTAACAGTCGCTATAAAGCCCGAATCTAA
32489573 ATATTGCAAAAGGAGGGATTTTTTTTTGGGGTTTTAAACACACATGTACAAACAGTATAGAAAAA
131 ATATTGCAAAAGGAGGGATTTTTTTTT-GGGTTTTAAACACACATGTACAAACAGTATAGAAAAA
* *
32489638 ATAAAAACTCACGGCAGATTCAAGAGTTTTGTTTTTTTTTCATTCTCTATTATTTCCTCCTGTTT
195 ATAAAAACTCACAGCAGATTCAAGAG---TGTTTTTTTTTCATTCTCTATTATTTCCTCCTATTT
32489703 TTTATTTTATTTTTATATATACATCTGTTTTTAATATAACAGACAATCCAAAAACAGATTTGAAA
257 TTTATTTTATTTTTATATATACATCTGTTTTTAATATAACAGACAATCCAAAAACAGATTTGAAA
*
32489768 ATCAAAGGGAAAACAGTTCACTTTTTTTAAGTTGTAATATACAAAAATACTTTTTATAATAAAGA
322 ATCAAAGGGAAAACAGTTCACTTTTTTTAAGTTGTAATATACAAAAATACTTTTTAAAATAAAGA
32489833 GGAGAAGTACTAC
387 GGAGAAGTACTAC
32489846 AGATCTTGTGATTACCTGCAAAAAAGGAAGAGAAAACAACAAAGGAAAGAAGCAAAACACGGCAA
1 AGATCTTGTGATTACCTGCAAAAAAGGAAGAGAAAACAACAAAGGAAAGAAGCAAAACACGGCAA
* *
32489911 GAAATAGGAAAGATTTTTATACCAAATTTGTATCGGTTAACAGTCGCTATAAAGCCCGAATCTAA
66 GAAATAGGAAAGATTTTCATAACAAATTTGTATCGGTTAACAGTCGCTATAAAGCCCGAATCTAA
* * *
32489976 ATATTGTAAAAGGAGGGAGTTTTTTTTT-TGTTTTAAACACACATGTACAAACAGTATAGAAGAA
131 ATATTGCAAAAGGAGGGA-TTTTTTTTTGGGTTTTAAACACACATGTACAAACAGTATAGAAAAA
*
32490040 ATAAAAACTCACAGCAGATTCAA-AG-GTTTTTTTTTCATTCTCTATTATTTCCTCTTATTTTTT
195 ATAAAAACTCACAGCAGATTCAAGAGTGTTTTTTTTTCATTCTCTATTATTTCCTCCTATTTTTT
* * *
32490103 ATTTTATTTTTATATATACATGTGTTTTTAATATAACAGACGATCCAAAATCAGATTTGAAAATC
260 ATTTTATTTTTATATATACATCTGTTTTTAATATAACAGACAATCCAAAAACAGATTTGAAAATC
32490168 AAAGGGAAAACAGTTCACTTTTTTTAAGTTGTAATATACAAAAATACTTTTTAAAATAAAGAGGA
325 AAAGGGAAAACAGTTCACTTTTTTTAAGTTGTAATATACAAAAATACTTTTTAAAATAAAGAGGA
*
32490233 GAATTACTA
390 GAAGTACTA
32490242 ACTGTGTTTC
Statistics
Matches: 376, Mismatches: 19, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
397 170 0.45
401 2 0.01
402 56 0.15
403 139 0.37
404 9 0.02
ACGTcount: A:0.40, C:0.12, G:0.15, T:0.33
Consensus pattern (399 bp):
AGATCTTGTGATTACCTGCAAAAAAGGAAGAGAAAACAACAAAGGAAAGAAGCAAAACACGGCAA
GAAATAGGAAAGATTTTCATAACAAATTTGTATCGGTTAACAGTCGCTATAAAGCCCGAATCTAA
ATATTGCAAAAGGAGGGATTTTTTTTTGGGTTTTAAACACACATGTACAAACAGTATAGAAAAAA
TAAAAACTCACAGCAGATTCAAGAGTGTTTTTTTTTCATTCTCTATTATTTCCTCCTATTTTTTA
TTTTATTTTTATATATACATCTGTTTTTAATATAACAGACAATCCAAAAACAGATTTGAAAATCA
AAGGGAAAACAGTTCACTTTTTTTAAGTTGTAATATACAAAAATACTTTTTAAAATAAAGAGGAG
AAGTACTAC
Found at i:32490870 original size:9 final size:10
Alignment explanation
Indices: 32490828--32490885 Score: 57
Period size: 10 Copynumber: 5.6 Consensus size: 10
32490818 CTTATTTTCA
32490828 TATTATATAT
1 TATTATATAT
*
32490838 TATATAAGTATTT
1 TAT-T-A-TATAT
32490851 TATTATATAT
1 TATTATATAT
32490861 TATT-TATAT
1 TATTATATAT
32490870 TATTAT-TATT
1 TATTATATA-T
32490880 TATTAT
1 TATTAT
32490886 TTTTCACAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
9 11 0.27
10 19 0.46
11 2 0.05
12 2 0.05
13 7 0.17
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (10 bp):
TATTATATAT
Found at i:32490876 original size:15 final size:16
Alignment explanation
Indices: 32490828--32490882 Score: 69
Period size: 15 Copynumber: 3.4 Consensus size: 16
32490818 CTTATTTTCA
*
32490828 TATTATATATTATATAAG
1 TATT-TATATTATAT-AT
32490846 TATTT-TATTATATAT
1 TATTTATATTATATAT
32490861 TATTTATATTAT-TAT
1 TATTTATATTATATAT
32490876 TATTTAT
1 TATTTAT
32490883 TATTTTTCAC
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
15 16 0.46
16 14 0.40
17 1 0.03
18 4 0.11
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (16 bp):
TATTTATATTATATAT
Found at i:32490882 original size:19 final size:19
Alignment explanation
Indices: 32490827--32490883 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 19
32490817 CCTTATTTTC
* **
32490827 ATATTATATATTATATAAGT
1 ATATTAT-TATTATTTATTT
*
32490847 ATTTTATTA-TATATTATTT
1 ATATTATTATTAT-TTATTT
32490866 ATATTATTATTATTTATT
1 ATATTATTATTATTTATT
32490884 ATTTTTCACA
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
18 3 0.10
19 18 0.60
20 9 0.30
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (19 bp):
ATATTATTATTATTTATTT
Found at i:32492209 original size:13 final size:13
Alignment explanation
Indices: 32492191--32492215 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32492181 AAATGGGTAG
32492191 TTTTCTGCAAATA
1 TTTTCTGCAAATA
32492204 TTTTCTGCAAAT
1 TTTTCTGCAAAT
32492216 CAGTTTCTGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.16, G:0.08, T:0.48
Consensus pattern (13 bp):
TTTTCTGCAAATA
Found at i:32493527 original size:19 final size:19
Alignment explanation
Indices: 32493483--32493527 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
32493473 TTGCTGTTTA
32493483 ATATTC-ATATTTTTACAT
1 ATATTCAATATTTTTACAT
32493501 ATATTTCAATATTTTTAC-T
1 ATA-TTCAATATTTTTACAT
32493520 AGTATTCA
1 A-TATTCA
32493528 TTGTGGATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
18 3 0.12
19 9 0.38
20 12 0.50
ACGTcount: A:0.33, C:0.11, G:0.02, T:0.53
Consensus pattern (19 bp):
ATATTCAATATTTTTACAT
Found at i:32498009 original size:1 final size:1
Alignment explanation
Indices: 32498003--32498032 Score: 60
Period size: 1 Copynumber: 30.0 Consensus size: 1
32497993 GCTAAAGAAC
32498003 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
32498033 CAAACAAACA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:32507280 original size:13 final size:15
Alignment explanation
Indices: 32507250--32507280 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
32507240 TTCCAAATTT
32507250 TCTTTTCTACCTCTC
1 TCTTTTCTACCTCTC
32507265 TCTTTTCTACCTCTC
1 TCTTTTCTACCTCTC
32507280 T
1 T
32507281 GGAAAGTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.39, G:0.00, T:0.55
Consensus pattern (15 bp):
TCTTTTCTACCTCTC
Found at i:32507366 original size:15 final size:14
Alignment explanation
Indices: 32507324--32507373 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
32507314 ATAATTTTGA
*
32507324 ATGCAAATGATGTG
1 ATGCAAATGATGAG
32507338 ATG-AAATGTTATGAG
1 ATGCAAATG--ATGAG
32507353 ATGCAAATGCATGA-
1 ATGCAAATG-ATGAG
32507367 ATGCAAA
1 ATGCAAA
32507374 AAGAATATCG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.32
15 11 0.35
16 5 0.16
ACGTcount: A:0.42, C:0.08, G:0.24, T:0.26
Consensus pattern (14 bp):
ATGCAAATGATGAG
Found at i:32507413 original size:14 final size:14
Alignment explanation
Indices: 32507394--32507423 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
32507384 ATTCTGGTTC
32507394 AATTTTATTTAGAA
1 AATTTTATTTAGAA
32507408 AATTTTATTTAGAA
1 AATTTTATTTAGAA
32507422 AA
1 AA
32507424 AGAATATCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (14 bp):
AATTTTATTTAGAA
Found at i:32512923 original size:205 final size:205
Alignment explanation
Indices: 32512570--32513628 Score: 1733
Period size: 205 Copynumber: 5.2 Consensus size: 205
32512560 NNNNNNNNNN
* * *
32512570 AAGGATGCCAAATCATCTTGGATCTTGCTTCAGT-ATAAACATCTGAAGGTTAGATCTGCTATGT
1 AAGGATGCCAAACCATCTTGGATC-TGCTTCAGTGA-AATCATCTGAAGGTGAGATCTGCTATGT
* ** * * * * *
32512634 ATCTGCTCTCCATTGAAGTGGAGATGCTAGACTTCAATTTGTTCTCTGACAATACAAAGACCACA
64 GTCTGCTCTCCATCAAAGTGAAGATGCCAAACTTCGATTTGTTCTCTGACAATACAAAGACGACA
32512699 AATCATCTTAGATTTGCTTCATCGTAATCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGCT
129 AATCATCTTAGATTTGCTTCATCGTAATCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGCT
32512764 CCTTGTAAACAC
194 CCTTGTAAACAC
* * *
32512776 AAGGATGCCATACCATCTTGGATCTGCTTTAGTGAAATCATCTGAAGGTGAGATCTGTTATGTGT
1 AAGGATGCCAAACCATCTTGGATCTGCTTCAGTGAAATCATCTGAAGGTGAGATCTGCTATGTGT
*
32512841 CTGCTCTCCATCAAAGTGAAGATGCCAAACTTCGATTCGTTCTCTGACAATACAAAGACGACAAA
66 CTGCTCTCCATCAAAGTGAAGATGCCAAACTTCGATTTGTTCTCTGACAATACAAAGACGACAAA
* ** *
32512906 TCATCTTAGATTTGCTTCATCATAATCACGTGAAAGCCAAATCAATTATGTCTTCGATTTGTTCC
131 TCATCTTAGATTTGCTTCATCGTAATCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCC
32512971 TTGTAAACAC
196 TTGTAAACAC
* * * *
32512981 GAGGCTGCCAAACTATCTTGGATCTGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATGTGT
1 AAGGATGCCAAACCATCTTGGATCTGCTTCAGTGAAATCATCTGAAGGTGAGATCTGCTATGTGT
*
32513046 CTGCTCTCCATCAAAGTGAAGATGCCAAACTTCGATTTGTTCTCTGACAATACAGAGACGACAAA
66 CTGCTCTCCATCAAAGTGAAGATGCCAAACTTCGATTTGTTCTCTGACAATACAAAGACGACAAA
* *
32513111 TCATCTTAGATTTGCTTCATCGTAATCACGTGAAAGCCAAATCAGCTATGTCTTTGATTTGTTCC
131 TCATCTTAGATTTGCTTCATCGTAATCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCC
32513176 TTGTAAACAC
196 TTGTAAACAC
* * *
32513186 AAGGATGCCAAACCATCTTGGATCTGCTTCAGTTAAATCATCTGAAGGTGAGATCTACTATATGT
1 AAGGATGCCAAACCATCTTGGATCTGCTTCAGTGAAATCATCTGAAGGTGAGATCTGCTATGTGT
* * * *
32513251 CTACTCTTCATAAAAGTGAAGATGCCAAACTTCAATTTGTTCTCTGACAATACAAAGACGACAAA
66 CTGCTCTCCATCAAAGTGAAGATGCCAAACTTCGATTTGTTCTCTGACAATACAAAGACGACAAA
32513316 TCATCTTAGATTTGCTTCATCGTAATCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCC
131 TCATCTTAGATTTGCTTCATCGTAATCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCC
32513381 TTGTAAACAC
196 TTGTAAACAC
* * *
32513391 AAGGATGCCATACCATCTTGGATCTGCTTTAGTGAAATCATCTGAAGGTGAGATCTGTTATGTGT
1 AAGGATGCCAAACCATCTTGGATCTGCTTCAGTGAAATCATCTGAAGGTGAGATCTGCTATGTGT
*
32513456 CTGCTCTCCATCAAAGTGAAGATGCCAAACTTCGATTTGTTCTCTGACAATACAGAGACGACAAA
66 CTGCTCTCCATCAAAGTGAAGATGCCAAACTTCGATTTGTTCTCTGACAATACAAAGACGACAAA
* * *
32513521 TCATCTTAGATTTGCTTCATCGTAATCACGTGAAAGTCAAATCAGCTATGTCTTCGATTTACTTC
131 TCATCTTAGATTTGCTTCATCGTAATCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCC
32513586 TTGTAAACAC
196 TTGTAAACAC
32513596 AAGGATGCCAAACCATCTTGGATCTGCTTCAGT
1 AAGGATGCCAAACCATCTTGGATCTGCTTCAGT
32513629 ATAACATCTG
Statistics
Matches: 790, Mismatches: 62, Indels: 3
0.92 0.07 0.00
Matches are distributed among these distances:
205 767 0.97
206 23 0.03
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.31
Consensus pattern (205 bp):
AAGGATGCCAAACCATCTTGGATCTGCTTCAGTGAAATCATCTGAAGGTGAGATCTGCTATGTGT
CTGCTCTCCATCAAAGTGAAGATGCCAAACTTCGATTTGTTCTCTGACAATACAAAGACGACAAA
TCATCTTAGATTTGCTTCATCGTAATCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCC
TTGTAAACAC
Found at i:32521546 original size:13 final size:15
Alignment explanation
Indices: 32521516--32521546 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
32521506 TTCCAGATTT
32521516 TCTTTTCTACCTCTC
1 TCTTTTCTACCTCTC
32521531 TCTTTTCTACCTCTC
1 TCTTTTCTACCTCTC
32521546 T
1 T
32521547 GGAAAGTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.39, G:0.00, T:0.55
Consensus pattern (15 bp):
TCTTTTCTACCTCTC
Done.