Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 98 of 313
Found at i:32523974 original size:172 final size:172
Alignment explanation
Indices: 32523688--32524031 Score: 679
Period size: 172 Copynumber: 2.0 Consensus size: 172
32523678 GTCTCCCTTT
32523688 TCTAGTTGAGTTTGCTCGGACCATCTGTGGACATTAACGTTGCCTTCCATTTTATCAAGAAGTCC
1 TCTAGTTGAGTTTGCTCGGACCATCTGTGGACATTAACGTTGCCTTCCATTTTATCAAGAAGTCC
32523753 GTTCTCCATAATAAAACTTCCTAACTTAGAAACTGACCATGAACCGATATCTTTGTAAATGCAAA
66 GTTCTCCATAATAAAACTTCCTAACTTAGAAACTGACCATGAACCGATATCTTTGTAAATGCAAA
*
32523818 ATGACATGCAAGCAAAAGAAAAGAGATAGTCAGTATCACATG
131 ATGACATGCAAGCAAAAGAAAAGAGATAGTCAGCATCACATG
32523860 TCTAGTTGAGTTTGCTCGGACCATCTGTGGACATTAACGTTGCCTTCCATTTTATCAAGAAGTCC
1 TCTAGTTGAGTTTGCTCGGACCATCTGTGGACATTAACGTTGCCTTCCATTTTATCAAGAAGTCC
32523925 GTTCTCCATAATAAAACTTCCTAACTTAGAAACTGACCATGAACCGATATCTTTGTAAATGCAAA
66 GTTCTCCATAATAAAACTTCCTAACTTAGAAACTGACCATGAACCGATATCTTTGTAAATGCAAA
32523990 ATGACATGCAAGCAAAAGAAAAGAGATAGTCAGCATCACATG
131 ATGACATGCAAGCAAAAGAAAAGAGATAGTCAGCATCACATG
32524032 ATATCAACAA
Statistics
Matches: 171, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
172 171 1.00
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (172 bp):
TCTAGTTGAGTTTGCTCGGACCATCTGTGGACATTAACGTTGCCTTCCATTTTATCAAGAAGTCC
GTTCTCCATAATAAAACTTCCTAACTTAGAAACTGACCATGAACCGATATCTTTGTAAATGCAAA
ATGACATGCAAGCAAAAGAAAAGAGATAGTCAGCATCACATG
Found at i:32525860 original size:3 final size:3
Alignment explanation
Indices: 32525852--32525884 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
32525842 NNNNNNNNNN
32525852 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
32525885 TTAAAATGCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:32526385 original size:28 final size:28
Alignment explanation
Indices: 32526340--32526436 Score: 114
Period size: 28 Copynumber: 3.6 Consensus size: 28
32526330 GATTTTTTGT
32526340 TCTTGAATCTCAAAAAAAGAAAAATC-CC
1 TCTTGAATCTC-AAAAAAGAAAAATCTCC
*
32526368 TCTTGAATCTC----ATGAAAAATCTCC
1 TCTTGAATCTCAAAAAAGAAAAATCTCC
* *
32526392 TCTTGAATCTCAAAAAAAAAAAATCTCT
1 TCTTGAATCTCAAAAAAGAAAAATCTCC
*
32526420 TCTTGAATCTAAAAAAA
1 TCTTGAATCTCAAAAAA
32526437 AATCTCTTCT
Statistics
Matches: 59, Mismatches: 5, Indels: 10
0.80 0.07 0.14
Matches are distributed among these distances:
23 9 0.15
24 13 0.22
28 37 0.63
ACGTcount: A:0.46, C:0.20, G:0.06, T:0.28
Consensus pattern (28 bp):
TCTTGAATCTCAAAAAAGAAAAATCTCC
Found at i:32526438 original size:52 final size:52
Alignment explanation
Indices: 32526340--32526442 Score: 154
Period size: 52 Copynumber: 2.0 Consensus size: 52
32526330 GATTTTTTGT
* **
32526340 TCTTGAATCTCAAAAAAAGAAAAATCCCTCTTGAATCTCATGAAAAATCTCC
1 TCTTGAATCTCAAAAAAAGAAAAATCCCTCTTGAATCTAAAAAAAAATCTCC
*
32526392 TCTTGAATCTCAAAAAAA-AAAAATCTCTTCTTGAATCTAAAAAAAAATCTC
1 TCTTGAATCTCAAAAAAAGAAAAATC-CCTCTTGAATCTAAAAAAAAATCTC
32526443 TTCTCTCCAA
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 7 0.15
52 39 0.85
ACGTcount: A:0.46, C:0.20, G:0.06, T:0.28
Consensus pattern (52 bp):
TCTTGAATCTCAAAAAAAGAAAAATCCCTCTTGAATCTAAAAAAAAATCTCC
Found at i:32526446 original size:24 final size:24
Alignment explanation
Indices: 32526354--32526442 Score: 90
Period size: 24 Copynumber: 3.5 Consensus size: 24
32526344 GAATCTCAAA
32526354 AAAAGAAAAATC-CCTCTTGAATCT
1 AAAA-AAAAATCTCCTCTTGAATCT
* **
32526378 CATGAAAAATCTCCTCTTGAATCT
1 AAAAAAAAATCTCCTCTTGAATCT
*
32526402 CAAAAAAAAAAAATCTCTTCTTGAATCT
1 ----AAAAAAAAATCTCCTCTTGAATCT
32526430 AAAAAAAAATCTC
1 AAAAAAAAATCTC
32526443 TTCTCTCCAA
Statistics
Matches: 53, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
23 7 0.13
24 26 0.49
28 20 0.38
ACGTcount: A:0.47, C:0.20, G:0.06, T:0.27
Consensus pattern (24 bp):
AAAAAAAAATCTCCTCTTGAATCT
Found at i:32526458 original size:26 final size:24
Alignment explanation
Indices: 32526406--32526459 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
32526396 GAATCTCAAA
* **
32526406 AAAAAAAAATCTCTTCTTGAATCT
1 AAAAAAAAATCTCTTCTTCAAAAT
32526430 AAAAAAAAATCTCTTCTCTCCAAAAT
1 AAAAAAAAATCTCTTCT-T-CAAAAT
32526456 AAAA
1 AAAA
32526460 TAGATTCCTC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 17 0.68
25 1 0.04
26 7 0.28
ACGTcount: A:0.52, C:0.19, G:0.02, T:0.28
Consensus pattern (24 bp):
AAAAAAAAATCTCTTCTTCAAAAT
Found at i:32527539 original size:13 final size:13
Alignment explanation
Indices: 32527469--32527545 Score: 75
Period size: 13 Copynumber: 5.9 Consensus size: 13
32527459 AGTTTGACAA
32527469 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* *
32527482 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
* *
32527495 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
32527508 TGCTTTTGAGAAA-
1 TGCTTTTGA-AAAG
* *
32527521 TTCTTTTGAGAAG
1 TGCTTTTGAAAAG
*
32527534 TGCTTTGGAAAA
1 TGCTTTTGAAAA
32527546 ATTTAAGTGT
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
12 2 0.04
13 48 0.91
14 3 0.06
ACGTcount: A:0.30, C:0.08, G:0.29, T:0.34
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:32527764 original size:30 final size:29
Alignment explanation
Indices: 32527712--32527833 Score: 83
Period size: 30 Copynumber: 4.0 Consensus size: 29
32527702 TAACTTATTG
32527712 TTAATATTTTAATATATAATATTAATT-T
1 TTAATATTTTAATATATAATATTAATTAT
32527740 TTAATATTTCTAAGTA-ATTAATATTAATTAT
1 TTAATATTT-TAA-TATA-TAATATTAATTAT
* * *
32527771 TTATTAAATTTAAT-TAGAATATATAAACTATAT
1 TTAAT-ATTTTAATATATAATAT-T-AA-T-TAT
*
32527804 TTAA-ATATTTAA-ATATAATAATTAAATAT
1 TTAATAT-TTTAATATATAAT-ATTAATTAT
32527833 T
1 T
32527834 GGTAATTAGA
Statistics
Matches: 74, Mismatches: 7, Indels: 25
0.70 0.07 0.24
Matches are distributed among these distances:
28 9 0.12
29 13 0.18
30 16 0.22
31 13 0.18
32 15 0.20
33 8 0.11
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (29 bp):
TTAATATTTTAATATATAATATTAATTAT
Found at i:32529046 original size:20 final size:19
Alignment explanation
Indices: 32529021--32529060 Score: 71
Period size: 20 Copynumber: 2.1 Consensus size: 19
32529011 TTATTTAATT
32529021 AATTTAAATTAAATAATTAA
1 AATTTAAATTAAA-AATTAA
32529041 AATTTAAATTAAAAATTAA
1 AATTTAAATTAAAAATTAA
32529060 A
1 A
32529061 TTAATTAGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
AATTTAAATTAAAAATTAA
Found at i:32529052 original size:12 final size:12
Alignment explanation
Indices: 32529035--32529064 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
32529025 TAAATTAAAT
*
32529035 AATTAAAATTTA
1 AATTAAAAATTA
32529047 AATTAAAAATTA
1 AATTAAAAATTA
32529059 AATTAA
1 AATTAA
32529065 TTAGTCATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (12 bp):
AATTAAAAATTA
Found at i:32532891 original size:46 final size:45
Alignment explanation
Indices: 32532779--32533088 Score: 156
Period size: 46 Copynumber: 6.7 Consensus size: 45
32532769 GCATATTTGT
32532779 GCTGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCGTAG
1 GCTGATG-CATGTCCCAGACAT-GTCTTACACTGACACATCTCGTAG
* * ** * *
32532826 TC-GATGCATGTCCCAGACATGTCTTACACTGGCTTATGTCTTGAG
1 GCTGATGCATGTCCCAGACATGTCTTACACTGACACATCTCGT-AG
* *
32532871 GCTGATGAATGTCCCAGACATGTCTTACACT-A-ACA-CTCGTTTCAAT
1 GCTGATGCATGTCCCAGACATGTCTTACACTGACACATCTCG--T--AG
* * ** *
32532917 GCTGATGCCATGTCCTAGACCTGGTCTTACA-T-A-AGTTCTAGCATATATG
1 GCTGATG-CATGTCCCAGACAT-GTCTTACACTGACACATCT--C--GTA-G
* * * *
32532966 TGCAGATGCCTTGTCCCAGACATGGTTTTACACTGGCACATCTCGTA-
1 -GCTGATG-CATGTCCCAGACAT-GTCTTACACTGACACATCTCGTAG
* * * *
32533013 GCCGATGCATGTTCCAGACATGTCTTACA-TTAGCTTACGTCTCG-AG
1 GCTGATGCATGTCCCAGACATGTCTTACACTGA-C--ACATCTCGTAG
* *
32533059 GCTAATGCATAT-CCAGACATGTCTTACACT
1 GCTGATGCATGTCCCAGACATGTCTTACACT
32533089 AGCACTCGTT
Statistics
Matches: 200, Mismatches: 41, Indels: 45
0.70 0.14 0.16
Matches are distributed among these distances:
43 3 0.01
44 26 0.13
45 47 0.23
46 62 0.31
47 15 0.08
48 11 0.05
49 2 0.01
50 28 0.14
51 2 0.01
53 4 0.02
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (45 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTGACACATCTCGTAG
Found at i:32533686 original size:46 final size:46
Alignment explanation
Indices: 32533610--32533704 Score: 154
Period size: 46 Copynumber: 2.1 Consensus size: 46
32533600 CCGGCCAAGC
* *
32533610 TCTTTTAAAAGGGTCTAATTGCCCTGTAAAGACCCCTAAATTTTAT
1 TCTTTTAAAACGGTCTAATTGCCCTGTAAAGACCCCCAAATTTTAT
* *
32533656 TCTTTTAAAACGGTCTAATTGTCCTTTAAAGACCCCCAAATTTTAT
1 TCTTTTAAAACGGTCTAATTGCCCTGTAAAGACCCCCAAATTTTAT
32533702 TCT
1 TCT
32533705 CTAGCTATTT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.29, C:0.21, G:0.11, T:0.39
Consensus pattern (46 bp):
TCTTTTAAAACGGTCTAATTGCCCTGTAAAGACCCCCAAATTTTAT
Found at i:32538139 original size:31 final size:31
Alignment explanation
Indices: 32538104--32538188 Score: 118
Period size: 31 Copynumber: 2.7 Consensus size: 31
32538094 TTGTAGTCGA
* *
32538104 AGCTACCACTAT-TCACTGATCAGGTAGCTAG
1 AGCTACCACT-TCTCACTAATCAGGTAGCCAG
32538135 AGCTACCACTTCTCACTAATCAGGTAGCCAG
1 AGCTACCACTTCTCACTAATCAGGTAGCCAG
*
32538166 AGCTACCACTTCTTACTGAATCA
1 AGCTACCACTTCTCACT-AATCA
32538189 AATTACTTAT
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
30 1 0.02
31 43 0.88
32 5 0.10
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (31 bp):
AGCTACCACTTCTCACTAATCAGGTAGCCAG
Found at i:32538328 original size:35 final size:35
Alignment explanation
Indices: 32538282--32538619 Score: 387
Period size: 35 Copynumber: 9.7 Consensus size: 35
32538272 TTTCCTCATT
**
32538282 GAAATACCATACCTATATTTCACAACTCAGTATGG
1 GAAATACCATACCTACGTTTCACAACTCAGTATGG
* **
32538317 GAAATGCCATACCTACGTTTCTTAACTCA-TAT-G
1 GAAATACCATACCTACGTTTCACAACTCAGTATGG
32538350 GATAATACCATACCTACGTTTCACAACTCAGTATGG
1 GA-AATACCATACCTACGTTTCACAACTCAGTATGG
**
32538386 TTAATACCATACCTACGTTTCACAACTCAGTATGG
1 GAAATACCATACCTACGTTTCACAACTCAGTATGG
** *
32538421 TTAATACCATACCTACGTTTCACAACTCGGTATGG
1 GAAATACCATACCTACGTTTCACAACTCAGTATGG
** * * *
32538456 TTAATATCATACCTACGTTTCACAACGCGGTAT-G
1 GAAATACCATACCTACGTTTCACAACTCAGTATGG
* *
32538490 GATGATACCATACCTATGTTTCACAACTCAGTATGG
1 GA-AATACCATACCTACGTTTCACAACTCAGTATGG
** * *
32538526 TTAATACCATACCTACATTTTACAACTCAGTAT-G
1 GAAATACCATACCTACGTTTCACAACTCAGTATGG
*
32538560 GATGATACCATACCTACGTTTCACAACTCAGTATGG
1 GA-AATACCATACCTACGTTTCACAACTCAGTATGG
** * *
32538596 TTAATAGCATACCTACATTTCACA
1 GAAATACCATACCTACGTTTCACA
32538620 CTTTGCCATG
Statistics
Matches: 260, Mismatches: 36, Indels: 14
0.84 0.12 0.05
Matches are distributed among these distances:
33 3 0.01
34 29 0.11
35 225 0.87
36 3 0.01
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.31
Consensus pattern (35 bp):
GAAATACCATACCTACGTTTCACAACTCAGTATGG
Found at i:32538454 original size:70 final size:70
Alignment explanation
Indices: 32538284--32538619 Score: 494
Period size: 70 Copynumber: 4.8 Consensus size: 70
32538274 TCCTCATTGA
** ** * **
32538284 AATACCATACCTATATTTCACAACTCAGTATGGGAAATGCCATACCTACGTTTCTTAACTCA-TA
1 AATACCATACCTACGTTTCACAACTCAGTATGGTTAATACCATACCTACGTTTCACAACTCAGTA
32538348 TGGAT
66 TGGAT
32538353 AATACCATACCTACGTTTCACAACTCAGTATGGTTAATACCATACCTACGTTTCACAACTCAGTA
1 AATACCATACCTACGTTTCACAACTCAGTATGGTTAATACCATACCTACGTTTCACAACTCAGTA
*
32538418 TGGTT
66 TGGAT
* * * *
32538423 AATACCATACCTACGTTTCACAACTCGGTATGGTTAATATCATACCTACGTTTCACAACGCGGTA
1 AATACCATACCTACGTTTCACAACTCAGTATGGTTAATACCATACCTACGTTTCACAACTCAGTA
32538488 TGGAT
66 TGGAT
* * * *
32538493 GATACCATACCTATGTTTCACAACTCAGTATGGTTAATACCATACCTACATTTTACAACTCAGTA
1 AATACCATACCTACGTTTCACAACTCAGTATGGTTAATACCATACCTACGTTTCACAACTCAGTA
32538558 TGGAT
66 TGGAT
* * *
32538563 GATACCATACCTACGTTTCACAACTCAGTATGGTTAATAGCATACCTACATTTCACA
1 AATACCATACCTACGTTTCACAACTCAGTATGGTTAATACCATACCTACGTTTCACA
32538620 CTTTGCCATG
Statistics
Matches: 242, Mismatches: 24, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
69 55 0.23
70 187 0.77
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.31
Consensus pattern (70 bp):
AATACCATACCTACGTTTCACAACTCAGTATGGTTAATACCATACCTACGTTTCACAACTCAGTA
TGGAT
Found at i:32538504 original size:105 final size:104
Alignment explanation
Indices: 32538284--32538619 Score: 474
Period size: 105 Copynumber: 3.2 Consensus size: 104
32538274 TCCTCATTGA
* ** * ** *
32538284 AATACCATACCTATATTTCACAACTCAGTATGGGAAATGCCATACCTACGTTTCTTAACTCATAT
1 AATACCATACCTACATTTCACAACTCAGTATGGTTAATACCATACCTACGTTTCACAACTCGTAT
32538349 GGATAATACCATACCTACGTTTCACAACTCAGTATGGTT
66 GGATAATACCATACCTACGTTTCACAACTCAGTATGGTT
*
32538388 AATACCATACCTACGTTTCACAACTCAGTATGGTTAATACCATACCTACGTTTCACAACTCGGTA
1 AATACCATACCTACATTTCACAACTCAGTATGGTTAATACCATACCTACGTTTCACAACTC-GTA
* * * * *
32538453 TGGTTAATATCATACCTACGTTTCACAACGCGGTATGGAT
65 TGGATAATACCATACCTACGTTTCACAACTCAGTATGGTT
* ** * *
32538493 GATACCATACCTATGTTTCACAACTCAGTATGGTTAATACCATACCTACATTTTACAACTCAGTA
1 AATACCATACCTACATTTCACAACTCAGTATGGTTAATACCATACCTACGTTTCACAACTC-GTA
*
32538558 TGGATGATACCATACCTACGTTTCACAACTCAGTATGGTT
65 TGGATAATACCATACCTACGTTTCACAACTCAGTATGGTT
*
32538598 AATAGCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
32538620 CTTTGCCATG
Statistics
Matches: 203, Mismatches: 28, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
104 54 0.27
105 149 0.73
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.31
Consensus pattern (104 bp):
AATACCATACCTACATTTCACAACTCAGTATGGTTAATACCATACCTACGTTTCACAACTCGTAT
GGATAATACCATACCTACGTTTCACAACTCAGTATGGTT
Found at i:32543710 original size:187 final size:188
Alignment explanation
Indices: 32543386--32543793 Score: 611
Period size: 187 Copynumber: 2.2 Consensus size: 188
32543376 TGGGGTAAGG
*
32543386 TGCCGATGCCATGTCCCAGACCTGGTCATACACAAGTTCTAGCATATATGTACCGATGCCATGTC
1 TGCCGATGCCATGTCCCAGACCTGGTCTTACACAAGTTCTAGCATATATGTACCGATGCCATGTC
* * * *
32543451 CCAGACATGGTCTTACACTGACACATATCGTATCTGATGCATGTCCCATACATGTCTTGCACTGG
66 CCAGACATGGTCTTACACTGACACATATCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGG
* * *
32543516 CTTACGTCTCGAGGTCGATGCATGT-CCATACATGTCTTACACTATCACTCGTTTCAA
131 CTTACGTCTCGAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTTTCAA
* * * * * *
32543573 TGTCGATGCCATATCCTAGACCTGGTCTTACACAAGTTCTAGCATTTATGTGCCGATGCCATGTT
1 TGCCGATGCCATGTCCCAGACCTGGTCTTACACAAGTTCTAGCATATATGTACCGATGCCATGTC
* * * *
32543638 CCAGACATGGTCTTACACTGGCACATCTCGTAGCCGATGCATGTCCTAGACATGTGTTACACTGG
66 CCAGACATGGTCTTACACTGACACATATCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGG
* * *
32543703 TTTACGTCTTGAGGCCGATGCATGTCCCAGGCATGTCTTACACTAGCACTCGTTTCAA
131 CTTACGTCTCGAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTTTCAA
*
32543761 TGCCGATGCCATGTCCCAGACATGGTCTTACAC
1 TGCCGATGCCATGTCCCAGACCTGGTCTTACAC
32543794 TGGCTTACAC
Statistics
Matches: 195, Mismatches: 25, Indels: 1
0.88 0.11 0.00
Matches are distributed among these distances:
187 137 0.70
188 58 0.30
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (188 bp):
TGCCGATGCCATGTCCCAGACCTGGTCTTACACAAGTTCTAGCATATATGTACCGATGCCATGTC
CCAGACATGGTCTTACACTGACACATATCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGG
CTTACGTCTCGAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTTTCAA
Found at i:32545817 original size:492 final size:492
Alignment explanation
Indices: 32544896--32546284 Score: 2372
Period size: 492 Copynumber: 2.8 Consensus size: 492
32544886 TAAACCAACT
* ** ** * * * *
32544896 TGAGGCTAGAACTCGTTTGAAGGATTGAAATCTTAACCGAAACAAACTCAAATTTACCTAAACTT
1 TGAGGCTAGAATTCGTCGGAAGGATCCAAACCTTAACCAAAACAAACTTAAAGTTACCTAAACTT
* ** * * **
32544961 TACATCAAACTTCATTTCATCATTGTAACATCTAATCTCACATTTCAAATGCCAACAAAACACAC
66 TACACCAAACTTTGTTTCATCATTGTAACATATAATCACACATTTCAAACACCAACAAAACACAC
* * *
32545026 ATTCAATACATCACCACCTAAC--A-TGATTGGCATAGATAAACACATATAATCATGCATAATAA
131 ATTCGATACATCACCACCTAACAAAGTGATTAGCATAGATAAACACATATAATCATACATAATAA
* * * * * *
32545088 TCTATTAGTCAAGCATCAAAATCCATTATTTAAAATATTTTGAGTCAAGTTACCCAAAATATACC
196 TATATTAGTCAAGCATAAAAATCCATTATTTAAAATATTATAAGTCAAGTTGCCTAAAATATACC
32545153 AAAACCATCAAAGTAGACATTAAACCATAAAGCTCAACCCAGGTACATGCCATTAACTATACTTA
261 AAAACCATCAAAGTAGACATTAAACCATAAAGCTCAACCCAGGTACATGCCATTAACTATACTTA
32545218 CATACTAAAAGGTATAGACTTGTTTCAAGTTGAGCTAGGTTATTAACCTTCAATGTTTTGCAACT
326 CATACTAAAAGGTATAGACTTGTTTCAAGTTGAGCTAGGTTATTAACCTTCAATGTTTTGCAACT
32545283 TTGATCTACTAAAACTCAAACTCTAAGTTAAAATGGCCAACAAACTCAAACTCACTCTAAGATTA
391 TTGATCTACTAAAACTCAAACTCTAAGTTAAAATGGCCAACAAACTCAAACTCACTCTAAGATTA
32545348 TGAAAATGGTATGTTTGAATGCTAGACATGTTATTCA
456 TGAAAATGGTATGTTTGAATGCTAGACATGTTATTCA
32545385 TGAGGCTAGAATTCGTCGGAAGGATCCAAACCTTAACCAAAACAAACTTAAAGTTACCTAAACTT
1 TGAGGCTAGAATTCGTCGGAAGGATCCAAACCTTAACCAAAACAAACTTAAAGTTACCTAAACTT
32545450 TACACCAAACTTTGTTTCATCATTGTAACATATAATCACACATTTCAAACACCAACAAAACACAC
66 TACACCAAACTTTGTTTCATCATTGTAACATATAATCACACATTTCAAACACCAACAAAACACAC
32545515 ATTCGATACATCACCACCTAACAAAGTGATTAGCATAGATAAACACATATAATCATACATAATAA
131 ATTCGATACATCACCACCTAACAAAGTGATTAGCATAGATAAACACATATAATCATACATAATAA
32545580 TATATTAGTCAAGCATAAAAATCCATTATTTAAAATATTATAAGTCAAGTTGCCTAAAATATACC
196 TATATTAGTCAAGCATAAAAATCCATTATTTAAAATATTATAAGTCAAGTTGCCTAAAATATACC
32545645 AAAACCATCAAAGTAGACATTAAACCATAAAGCTCAACCCAGGTACATGCCATTAACTATACTTA
261 AAAACCATCAAAGTAGACATTAAACCATAAAGCTCAACCCAGGTACATGCCATTAACTATACTTA
32545710 CATACTAAAAGGTATAGACTTGTTTCAAGTTGAGCTAGGTTATTAACCTTCAATGTTTTGCAACT
326 CATACTAAAAGGTATAGACTTGTTTCAAGTTGAGCTAGGTTATTAACCTTCAATGTTTTGCAACT
32545775 TTGATCTACTAAAACTCAAACTCTAAGTTAAAATGGCCAACAAACTCAAACTCACTCTAAGATTA
391 TTGATCTACTAAAACTCAAACTCTAAGTTAAAATGGCCAACAAACTCAAACTCACTCTAAGATTA
*
32545840 TGAAAATGGTATGTTTGAATGTTAGACATGTTATTCA
456 TGAAAATGGTATGTTTGAATGCTAGACATGTTATTCA
32545877 TGAGGCTAGAATTCGTCGGAAGGATCCAAACCTTAACCAAAACAAACTTAAAGTTACCTAAACTT
1 TGAGGCTAGAATTCGTCGGAAGGATCCAAACCTTAACCAAAACAAACTTAAAGTTACCTAAACTT
32545942 TACACCAAACTTTGTTTCATCATTGTAACATATAATCACACATTTCAAACACCAACAAAACACAC
66 TACACCAAACTTTGTTTCATCATTGTAACATATAATCACACATTTCAAACACCAACAAAACACAC
32546007 ATTCGATACATCACCACCTAACAAAGTGATTAGCATAGATAAACACATATAATCATACATAATAA
131 ATTCGATACATCACCACCTAACAAAGTGATTAGCATAGATAAACACATATAATCATACATAATAA
32546072 TATATTAGTCAAGCATAAAAATCCATTATTTAAAATATTATAAGTCAAGTTGCCTAAAATATACC
196 TATATTAGTCAAGCATAAAAATCCATTATTTAAAATATTATAAGTCAAGTTGCCTAAAATATACC
* * * * * * *
32546137 AAAACCATCAAAGTAGACATTAAACGACAAGGCTCAACCCAGGTACCTGTCATTAACTACAATTA
261 AAAACCATCAAAGTAGACATTAAACCATAAAGCTCAACCCAGGTACATGCCATTAACTATACTTA
* * * ** * *
32546202 CATACTAAAAGGTATAAACTTG-TTCTGAGTTGAGCTAGGTTACTAACCTTGGATGCTTTACAAC
326 CATACTAAAAGGTATAGACTTGTTTC-AAGTTGAGCTAGGTTATTAACCTTCAATGTTTTGCAAC
*
32546266 TTTGATATACTAAAACTCA
390 TTTGATCTACTAAAACTCA
32546285 TATAAGACCT
Statistics
Matches: 855, Mismatches: 41, Indels: 5
0.95 0.05 0.01
Matches are distributed among these distances:
489 135 0.16
491 4 0.00
492 716 0.84
ACGTcount: A:0.41, C:0.20, G:0.11, T:0.28
Consensus pattern (492 bp):
TGAGGCTAGAATTCGTCGGAAGGATCCAAACCTTAACCAAAACAAACTTAAAGTTACCTAAACTT
TACACCAAACTTTGTTTCATCATTGTAACATATAATCACACATTTCAAACACCAACAAAACACAC
ATTCGATACATCACCACCTAACAAAGTGATTAGCATAGATAAACACATATAATCATACATAATAA
TATATTAGTCAAGCATAAAAATCCATTATTTAAAATATTATAAGTCAAGTTGCCTAAAATATACC
AAAACCATCAAAGTAGACATTAAACCATAAAGCTCAACCCAGGTACATGCCATTAACTATACTTA
CATACTAAAAGGTATAGACTTGTTTCAAGTTGAGCTAGGTTATTAACCTTCAATGTTTTGCAACT
TTGATCTACTAAAACTCAAACTCTAAGTTAAAATGGCCAACAAACTCAAACTCACTCTAAGATTA
TGAAAATGGTATGTTTGAATGCTAGACATGTTATTCA
Found at i:32549866 original size:13 final size:13
Alignment explanation
Indices: 32549841--32549878 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
32549831 AGCTATCACA
*
32549841 TGAATTAAATTAT
1 TGAATTAATTTAT
32549854 T-AAGTTAATTTAT
1 TGAA-TTAATTTAT
32549867 TGAATTAATTTA
1 TGAATTAATTTA
32549879 ATTTGACAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
12 2 0.09
13 18 0.82
14 2 0.09
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (13 bp):
TGAATTAATTTAT
Found at i:32552849 original size:83 final size:83
Alignment explanation
Indices: 32552749--32552914 Score: 262
Period size: 83 Copynumber: 2.0 Consensus size: 83
32552739 AAGGACAATG
* * *
32552749 GTAAGACCAAACCCAACAAAGGAAAGA-CTGCATTAAAACCTAAAGAAGGAATTTCTAAGGATGG
1 GTAAGACCAAACCCAACAAAAGAAAAATC-GCATTAAAACCTAAAGAAGGAATTTCTAAGGAAGG
32552813 AAAATGTTTCCATTACGGT
65 AAAATGTTTCCATTACGGT
* * *
32552832 GTAAGACCAAACCCAACAAAAGAAAAATCGCATTGAAACTTAAAGGAGGAATTTCTAAGGAAGGA
1 GTAAGACCAAACCCAACAAAAGAAAAATCGCATTAAAACCTAAAGAAGGAATTTCTAAGGAAGGA
32552897 AAATGTTTCCATTACGGT
66 AAATGTTTCCATTACGGT
32552915 AAGACCGGAC
Statistics
Matches: 76, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
83 75 0.99
84 1 0.01
ACGTcount: A:0.44, C:0.16, G:0.19, T:0.20
Consensus pattern (83 bp):
GTAAGACCAAACCCAACAAAAGAAAAATCGCATTAAAACCTAAAGAAGGAATTTCTAAGGAAGGA
AAATGTTTCCATTACGGT
Found at i:32553957 original size:19 final size:20
Alignment explanation
Indices: 32553924--32553964 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
32553914 ATTTTAAAAA
*
32553924 TTAAAAACTATTAAAATTAT
1 TTAAAAACTATTAAAAATAT
*
32553944 TTAAAAAGTA-TAAAAATAT
1 TTAAAAACTATTAAAAATAT
32553963 TT
1 TT
32553965 TTTAAATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.39
Consensus pattern (20 bp):
TTAAAAACTATTAAAAATAT
Found at i:32566549 original size:18 final size:18
Alignment explanation
Indices: 32566526--32566570 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
32566516 ATTAAAATTT
32566526 TAAAAATAATTCACAACA
1 TAAAAATAATTCACAACA
*
32566544 TAAAAA-ATTTCACAACA
1 TAAAAATAATTCACAACA
*
32566561 T-CAAATAATT
1 TAAAAATAATT
32566571 AGAGGATATG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
16 3 0.13
17 14 0.61
18 6 0.26
ACGTcount: A:0.58, C:0.16, G:0.00, T:0.27
Consensus pattern (18 bp):
TAAAAATAATTCACAACA
Found at i:32567967 original size:19 final size:19
Alignment explanation
Indices: 32567920--32567973 Score: 60
Period size: 19 Copynumber: 3.0 Consensus size: 19
32567910 ATACTTTAAA
32567920 ATATTTATTA-T-TAATA-
1 ATATTTATTATTATAATAT
**
32567936 ATATTTAAAATTATAATAT
1 ATATTTATTATTATAATAT
*
32567955 ATATTTATTATTAAAATAT
1 ATATTTATTATTATAATAT
32567974 TAGTATAAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
16 8 0.27
17 1 0.03
18 5 0.17
19 16 0.53
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (19 bp):
ATATTTATTATTATAATAT
Found at i:32568743 original size:21 final size:21
Alignment explanation
Indices: 32568719--32568775 Score: 66
Period size: 19 Copynumber: 2.8 Consensus size: 21
32568709 AAAATTAAAA
32568719 AAAAATATAAAATTTATTTTT
1 AAAAATATAAAATTTATTTTT
32568740 AAAAATCAT--AATTT-TTTTT
1 AAAAAT-ATAAAATTTATTTTT
*
32568759 AAAAAAATTAAAATTTA
1 AAAAATA-TAAAATTTA
32568776 ATTAAGTGCT
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
18 1 0.03
19 11 0.37
20 5 0.17
21 11 0.37
22 2 0.07
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (21 bp):
AAAAATATAAAATTTATTTTT
Found at i:32569202 original size:27 final size:27
Alignment explanation
Indices: 32569171--32569243 Score: 119
Period size: 27 Copynumber: 2.7 Consensus size: 27
32569161 GGGTATGGTG
*
32569171 CCTATCTGATAGGCAGCACTGGTGACC
1 CCTATCTGATAGGCGGCACTGGTGACC
*
32569198 CCTATCTGATAGGCGGTACTGGTGACC
1 CCTATCTGATAGGCGGCACTGGTGACC
*
32569225 CCTATCTAATAGGCGGCAC
1 CCTATCTGATAGGCGGCAC
32569244 CAATAGCATT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.23
Consensus pattern (27 bp):
CCTATCTGATAGGCGGCACTGGTGACC
Found at i:32575051 original size:62 final size:62
Alignment explanation
Indices: 32574753--32575031 Score: 452
Period size: 62 Copynumber: 4.5 Consensus size: 62
32574743 CAGTGTACCT
* * *
32574753 AATTTATATTACAAACTTTATTCCAAGTTTTAATGTTGTAAT-TATTTAATTTATATAACAA
1 AATTTATATTACAAAGTTTGTTCCAAGTTTTAATATTGTAATGTATTTAATTTATATAACAA
* *
32574814 AATTTATATTACAAAGTTTGTTCCAATTTTTAATATTGTAATGTATTTAATTTATATAATAA
1 AATTTATATTACAAAGTTTGTTCCAAGTTTTAATATTGTAATGTATTTAATTTATATAACAA
*
32574876 AATTTATATTACAAAGTTTGTTCCAAGTTTTAGTATTGTAATGTATTTAATTTATATAACAA
1 AATTTATATTACAAAGTTTGTTCCAAGTTTTAATATTGTAATGTATTTAATTTATATAACAA
* * *
32574938 AATTTATATTATAAAGTTTGTTTCAAGTTTTAATATTGTAATGTATTTAATTTATATTACAA
1 AATTTATATTACAAAGTTTGTTCCAAGTTTTAATATTGTAATGTATTTAATTTATATAACAA
* *
32575000 AAATTATATTACAAAGTTTGTTTCAAGTTTTA
1 AATTTATATTACAAAGTTTGTTCCAAGTTTTA
32575032 GTGTTGCAAT
Statistics
Matches: 203, Mismatches: 14, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
61 38 0.19
62 165 0.81
ACGTcount: A:0.38, C:0.06, G:0.08, T:0.49
Consensus pattern (62 bp):
AATTTATATTACAAAGTTTGTTCCAAGTTTTAATATTGTAATGTATTTAATTTATATAACAA
Found at i:32576202 original size:14 final size:14
Alignment explanation
Indices: 32576183--32576209 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
32576173 CAAATTACAT
32576183 GTTAGAATAGTATC
1 GTTAGAATAGTATC
32576197 GTTAGAATAGTAT
1 GTTAGAATAGTAT
32576210 TATTAGAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.04, G:0.22, T:0.37
Consensus pattern (14 bp):
GTTAGAATAGTATC
Found at i:32576215 original size:14 final size:14
Alignment explanation
Indices: 32576184--32576217 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
32576174 AAATTACATG
*
32576184 TTAGAATAGTATCG
1 TTAGAATAGTATCA
*
32576198 TTAGAATAGTATTA
1 TTAGAATAGTATCA
32576212 TTAGAA
1 TTAGAA
32576218 AAAATGTCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.41, C:0.03, G:0.18, T:0.38
Consensus pattern (14 bp):
TTAGAATAGTATCA
Found at i:32578216 original size:17 final size:16
Alignment explanation
Indices: 32578182--32578219 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
32578172 TCTATTTTTT
32578182 TTCT-TCTCTTTCTCC
1 TTCTCTCTCTTTCTCC
*
32578197 TTCTCTCTCTATTCTGC
1 TTCTCTCTCT-TTCTCC
32578214 TTCTCT
1 TTCTCT
32578220 TTTTTTTCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 4 0.20
16 5 0.25
17 11 0.55
ACGTcount: A:0.03, C:0.37, G:0.03, T:0.58
Consensus pattern (16 bp):
TTCTCTCTCTTTCTCC
Found at i:32578245 original size:5 final size:5
Alignment explanation
Indices: 32578235--32578269 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
32578225 TTCTTTCTTT
32578235 TTCCC TTCCC TTCCC TTCCC TTCCC TTCCC TTCCC
1 TTCCC TTCCC TTCCC TTCCC TTCCC TTCCC TTCCC
32578270 GCTCTCTCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.00, C:0.60, G:0.00, T:0.40
Consensus pattern (5 bp):
TTCCC
Found at i:32593461 original size:38 final size:37
Alignment explanation
Indices: 32593405--32593526 Score: 158
Period size: 38 Copynumber: 3.2 Consensus size: 37
32593395 GTGTACGTAT
* *
32593405 AAGACCATAGT-TGGGCTATGGCATCGTAATTAAAGTGT-
1 AAGACCATA-TCT-GGCTATGGCATTGTGA-TAAAGTGTA
32593443 AAGACCATATCTGCGCTATGGCATTGTGATAAAGTGTA
1 AAGACCATATCTG-GCTATGGCATTGTGATAAAGTGTA
*
32593481 AAGACCATAACTAGGCTATGGCATTGTGATAAAGTGTA
1 AAGACCATATCT-GGCTATGGCATTGTGATAAAGTGTA
32593519 AAGACCAT
1 AAGACCAT
32593527 GGCAATATAT
Statistics
Matches: 77, Mismatches: 3, Indels: 8
0.88 0.03 0.09
Matches are distributed among these distances:
37 10 0.13
38 66 0.86
39 1 0.01
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (37 bp):
AAGACCATATCTGGCTATGGCATTGTGATAAAGTGTA
Found at i:32597955 original size:6 final size:6
Alignment explanation
Indices: 32597934--32597967 Score: 50
Period size: 6 Copynumber: 5.3 Consensus size: 6
32597924 AAATAAAGAC
32597934 AATTAA AATTCCAA AATTAA AATTAA AATTAA AA
1 AATTAA AATT--AA AATTAA AATTAA AATTAA AA
32597968 ACTTTTGAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 20 0.77
8 6 0.23
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (6 bp):
AATTAA
Found at i:32598949 original size:20 final size:20
Alignment explanation
Indices: 32598926--32598963 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
32598916 CCAGCTTGAG
32598926 ACATGCCCGTGTAGCCTGGA
1 ACATGCCCGTGTAGCCTGGA
*
32598946 ACATGCCCGTGTGGCCTG
1 ACATGCCCGTGTAGCCTG
32598964 CCCGTGGGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.16, C:0.32, G:0.32, T:0.21
Consensus pattern (20 bp):
ACATGCCCGTGTAGCCTGGA
Found at i:32601083 original size:3 final size:3
Alignment explanation
Indices: 32601075--32601118 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
32601065 ACCATTTGTA
32601075 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
32601119 ATAAGTAAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:32601129 original size:8 final size:7
Alignment explanation
Indices: 32601073--32601129 Score: 63
Period size: 6 Copynumber: 8.9 Consensus size: 7
32601063 TCACCATTTG
32601073 TAAATAA
1 TAAATAA
32601080 T-AATAA
1 TAAATAA
32601086 T-AATAA
1 TAAATAA
32601092 T-AATAA
1 TAAATAA
32601098 T-AATAA
1 TAAATAA
32601104 T-AATAA
1 TAAATAA
32601110 T-AATAA
1 TAAATAA
32601116 TAAATAA
1 TAAATAA
32601123 GTAAATA
1 -TAAATA
32601130 TCTTTTACTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
6 36 0.75
7 6 0.12
8 6 0.12
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.32
Consensus pattern (7 bp):
TAAATAA
Found at i:32606839 original size:13 final size:13
Alignment explanation
Indices: 32606821--32606856 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
32606811 GATAATTAGT
32606821 AAATCATACATAC
1 AAATCATACATAC
*
32606834 AAATCATACATAT
1 AAATCATACATAC
32606847 AAATTCATAC
1 AAA-TCATAC
32606857 CAAACTATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 15 0.71
14 6 0.29
ACGTcount: A:0.53, C:0.19, G:0.00, T:0.28
Consensus pattern (13 bp):
AAATCATACATAC
Found at i:32607450 original size:3 final size:3
Alignment explanation
Indices: 32607442--32607476 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
32607432 AATATGACAC
32607442 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
32607477 GTAAATATCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:32628460 original size:23 final size:24
Alignment explanation
Indices: 32628398--32628463 Score: 80
Period size: 27 Copynumber: 2.7 Consensus size: 24
32628388 GCTATGTGAG
**
32628398 GAAATGAGAGAATGAATGATGATT
1 GAAATGAGAGAATGAGGGATGATT
32628422 GAGAGATGAGAAGAATGAGGGATGATT
1 GA-A-ATGAG-AGAATGAGGGATGATT
32628449 GAAATGAG-GAATGAG
1 GAAATGAGAGAATGAG
32628464 TGAGGGTATT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
23 7 0.19
24 2 0.05
25 6 0.16
26 6 0.16
27 16 0.43
ACGTcount: A:0.44, C:0.00, G:0.36, T:0.20
Consensus pattern (24 bp):
GAAATGAGAGAATGAGGGATGATT
Found at i:32629547 original size:18 final size:18
Alignment explanation
Indices: 32629524--32629559 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
32629514 TTCATCATAT
32629524 ATATGAA-ATTGATAAGTG
1 ATATGAATA-TGATAAGTG
32629542 ATATGAATATGATAAGTG
1 ATATGAATATGATAAGTG
32629560 TGAGTGTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 16 0.94
19 1 0.06
ACGTcount: A:0.44, C:0.00, G:0.22, T:0.33
Consensus pattern (18 bp):
ATATGAATATGATAAGTG
Found at i:32631263 original size:34 final size:34
Alignment explanation
Indices: 32631199--32631264 Score: 80
Period size: 34 Copynumber: 1.9 Consensus size: 34
32631189 GTGACAGTCT
* **
32631199 AGTATCAGTTAGGGTCGTAGCCCATTACAGTATC
1 AGTATCAGTTAGGGCCGTAGCCCAACACAGTATC
*
32631233 AGTATCAGTGT-GGGCCTTAGCCCAACACAGTA
1 AGTATCAGT-TAGGGCCGTAGCCCAACACAGTA
32631265 ATAGTAATAG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
34 26 0.96
35 1 0.04
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (34 bp):
AGTATCAGTTAGGGCCGTAGCCCAACACAGTATC
Found at i:32638967 original size:34 final size:34
Alignment explanation
Indices: 32638924--32639003 Score: 97
Period size: 34 Copynumber: 2.4 Consensus size: 34
32638914 AGTGATAGTC
* *
32638924 CAGTATCAGTAAGGGCCGTAGCCCATTACAGTAT
1 CAGTATCAGTAAGGGCCGTAGCCCAATACAGTAA
** * *
32638958 CAGTATCAGTGTGGGCCTTAGCCCAATATAGTAA
1 CAGTATCAGTAAGGGCCGTAGCCCAATACAGTAA
*
32638992 CAGTAACAGTAA
1 CAGTATCAGTAA
32639004 TGCAATCAGA
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.24
Consensus pattern (34 bp):
CAGTATCAGTAAGGGCCGTAGCCCAATACAGTAA
Found at i:32648316 original size:14 final size:15
Alignment explanation
Indices: 32648297--32648331 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
32648287 AGTGTTGGGG
*
32648297 TAAAAATTTTAAAAA
1 TAAAAATTGTAAAAA
*
32648312 TAAAAATTGTGAAAA
1 TAAAAATTGTAAAAA
32648327 TAAAA
1 TAAAA
32648332 TAAAATAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.29
Consensus pattern (15 bp):
TAAAAATTGTAAAAA
Found at i:32651330 original size:5 final size:5
Alignment explanation
Indices: 32651320--32651347 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
32651310 CCAATTTATG
32651320 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
32651348 GAACACACAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:32654401 original size:36 final size:36
Alignment explanation
Indices: 32654354--32654427 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
32654344 CTATGGCCAT
32654354 AGTTTCAACCATGAAATCAAAAGTGCATAAAAGTAA
1 AGTTTCAACCATGAAATCAAAAGTGCATAAAAGTAA
32654390 AGTTTCAACCATGAAATCAAAAGTGCATAAAAGTAA
1 AGTTTCAACCATGAAATCAAAAGTGCATAAAAGTAA
32654426 AG
1 AG
32654428 GACATTGAGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.50, C:0.14, G:0.15, T:0.22
Consensus pattern (36 bp):
AGTTTCAACCATGAAATCAAAAGTGCATAAAAGTAA
Found at i:32665013 original size:13 final size:13
Alignment explanation
Indices: 32664995--32665024 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
32664985 ATGGCAATCA
32664995 TGTCACACGGCCG
1 TGTCACACGGCCG
*
32665008 TGTCACACGGGCG
1 TGTCACACGGCCG
32665021 TGTC
1 TGTC
32665025 CCTGCTAAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.13, C:0.33, G:0.33, T:0.20
Consensus pattern (13 bp):
TGTCACACGGCCG
Found at i:32674228 original size:208 final size:208
Alignment explanation
Indices: 32673856--32674265 Score: 678
Period size: 208 Copynumber: 2.0 Consensus size: 208
32673846 ACGCCTACTA
* *
32673856 ATCGCGTGATTTCGTGATAGATTTTAAATATTTATAATTAATCATTCTTGAAACTAACTATTATC
1 ATCGCGAGATTTCGTGATAGATTTTAAATATTAATAATTAATCATTCTTGAAACTAACTATTATC
* * ** *
32673921 GCGATGTAGGCAAGTGTACCTATCGAACAGTAGTATAGTTTTAGCAAGACCGGATTGTCCAACCC
66 ACAATACAGGCAAGTGTACCTATCGAACAGTAGTATAATTTTAGCAAGACCGGATTGTCCAACCC
* *
32673986 AAAGGAACTAAAAGTACTAGTAATGACTGTCTTTTTATTATCTAGCCTAAGAATAAAGAGGTTTT
131 AAAGGAACTAAAAGTACTAGTAATGACTGTCTTTTTATTATCTAGCCTAAGAATAAAAAAG-TTT
32674051 TGTTTTAACTAATG
195 TGTTTTAACTAATG
* * * *
32674065 ATCGCGAGATTTTGTGATAGGTTTTAAATATTAATAATTACTCGTTCTTG-AACTAACTATTATC
1 ATCGCGAGATTTCGTGATAGATTTTAAATATTAATAATTAATCATTCTTGAAACTAACTATTATC
*
32674129 ACAATACAGGCAAGTGTACCTATCGAACAGTAGTATAATTTTAGCAAGACCGGATTGTCGAACCC
66 ACAATACAGGCAAGTGTACCTATCGAACAGTAGTATAATTTTAGCAAGACCGGATTGTCCAACCC
32674194 AAAGGAACTAAAAGTACTAGTAATGACTGTCTTTTTATTATCTAGCCTAAGAATAAAAAAGTTTT
131 AAAGGAACTAAAAGTACTAGTAATGACTGTCTTTTTATTATCTAGCCTAAGAATAAAAAAGTTTT
32674259 GTTTTAA
196 GTTTTAA
32674266 TTAACTAATT
Statistics
Matches: 187, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
207 11 0.06
208 132 0.71
209 44 0.24
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34
Consensus pattern (208 bp):
ATCGCGAGATTTCGTGATAGATTTTAAATATTAATAATTAATCATTCTTGAAACTAACTATTATC
ACAATACAGGCAAGTGTACCTATCGAACAGTAGTATAATTTTAGCAAGACCGGATTGTCCAACCC
AAAGGAACTAAAAGTACTAGTAATGACTGTCTTTTTATTATCTAGCCTAAGAATAAAAAAGTTTT
GTTTTAACTAATG
Found at i:32678800 original size:11 final size:11
Alignment explanation
Indices: 32678783--32678827 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
32678773 AGATAAATAT
32678783 TATTTTATTAA
1 TATTTTATTAA
*
32678794 TACTTTATTAAGA
1 TATTTTATT-A-A
*
32678807 TATTTTATTAT
1 TATTTTATTAA
32678818 TATTTTATTA
1 TATTTTATTA
32678828 GTATATAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 18 0.62
12 2 0.07
13 9 0.31
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:32679878 original size:38 final size:38
Alignment explanation
Indices: 32679829--32680237 Score: 494
Period size: 38 Copynumber: 9.9 Consensus size: 38
32679819 TGATATGAAA
32679829 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
32679867 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
32679905 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
32679943 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
32679981 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
32680019 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG
32680062 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
1 ---TGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG
*
32680108 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTG
1 ---TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
* *
32680149 ACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACGTG
1 ---TG---TG--TAAGACCATGGTTGAAAGATACCATGGCAACCTG
*
32680195 ACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 ---TG---TG--TAAGACCATGGTTGAAAGATACCATGGCAAC
32680238 ATGACAGAAA
Statistics
Matches: 355, Mismatches: 3, Indels: 18
0.94 0.01 0.05
Matches are distributed among these distances:
38 188 0.53
41 6 0.02
43 2 0.01
44 1 0.00
46 158 0.45
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (38 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
Found at i:32680086 original size:46 final size:46
Alignment explanation
Indices: 32680022--32680281 Score: 378
Period size: 46 Copynumber: 5.7 Consensus size: 46
32680012 CAACCTGTGT
* *
32680022 GTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGT
1 GTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGA
* *
32680068 GTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGT
1 GTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGA
* *
32680114 GTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGA
1 GTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGA
* * *
32680160 ATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGA
1 GTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGA
* *
32680206 ATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGA
1 GTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATG-AAATGA
* * *
32680252 GTAAGACCATAGTTGAAAGACACTATGGCA
1 GTAAGACCATGGTTGAAAGATACCATGGCA
32680282 TCACGTCAAA
Statistics
Matches: 202, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
45 1 0.00
46 201 1.00
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.20
Consensus pattern (46 bp):
GTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGA
Found at i:32680201 original size:138 final size:129
Alignment explanation
Indices: 32679943--32680281 Score: 415
Period size: 138 Copynumber: 2.6 Consensus size: 129
32679933 TGGCAACCTG
32679943 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACC----TG---TGTGTAAGACCATGGTTGAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAATGAAATGTGTAAGACCATGGTTGAA
* *
32680001 AGATACCATGGCAACCTGTGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
66 AGATACCATGGCAACCTGTGAGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
32680065 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA-ATGAAATGTGTAAGACCATGGTTGA
* *
32680130 AAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACGTG
65 AAGATACCATGGCAACCTG---TG---AG--TAAGACCATGGTTGAAAGATACCATGGCAACCTG
32680195 ACATGAAA
122 ACATGAAA
* ** * * *
32680203 AGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAGTAAGACCATAGTTG
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA-ATG-AAATGTGTAAGACCATGGTTG
* *
32680267 AAAGACACTATGGCA
64 AAAGATACCATGGCA
32680282 TCACGTCAAA
Statistics
Matches: 187, Mismatches: 13, Indels: 18
0.86 0.06 0.08
Matches are distributed among these distances:
122 36 0.19
127 2 0.01
130 37 0.20
133 2 0.01
136 1 0.01
137 1 0.01
138 108 0.58
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.21
Consensus pattern (129 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAATGAAATGTGTAAGACCATGGTTGAA
AGATACCATGGCAACCTGTGAGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
Found at i:32680587 original size:23 final size:25
Alignment explanation
Indices: 32680542--32680588 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
32680532 AATAAATATA
*
32680542 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
32680567 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
32680589 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:32683536 original size:5 final size:5
Alignment explanation
Indices: 32683498--32683593 Score: 56
Period size: 5 Copynumber: 18.2 Consensus size: 5
32683488 TACAAGGTCC
*
32683498 TATTT T-TTT TA-TT TATTCT AATTT T-TATT T-TTT TATTT TATTTT
1 TATTT TATTT TATTT TATT-T TATTT TAT-TT TATTT TATTT TA-TTT
* *
32683542 TATTTT TCTTT TGATTTT TATTT TCATTT CAATTT TATTAT TATTT TATTT
1 TA-TTT TATTT T-A-TTT TATTT T-ATTT -TATTT TATT-T TATTT TATTT
32683593 T
1 T
32683594 GAATGACATA
Statistics
Matches: 74, Mismatches: 6, Indels: 22
0.73 0.06 0.22
Matches are distributed among these distances:
4 12 0.16
5 30 0.41
6 28 0.38
7 4 0.05
ACGTcount: A:0.19, C:0.04, G:0.01, T:0.76
Consensus pattern (5 bp):
TATTT
Found at i:32683537 original size:25 final size:24
Alignment explanation
Indices: 32683501--32683553 Score: 70
Period size: 25 Copynumber: 2.2 Consensus size: 24
32683491 AAGGTCCTAT
32683501 TTTTTTTATTTATTCTAATTTTTA
1 TTTTTTTATTTATTCTAATTTTTA
* * *
32683525 TTTTTTTATTTTATTTTTATTTTTC
1 TTTTTTTA-TTTATTCTAATTTTTA
32683550 TTTT
1 TTTT
32683554 GATTTTTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 8 0.32
25 17 0.68
ACGTcount: A:0.15, C:0.04, G:0.00, T:0.81
Consensus pattern (24 bp):
TTTTTTTATTTATTCTAATTTTTA
Found at i:32683541 original size:18 final size:20
Alignment explanation
Indices: 32683500--32683592 Score: 86
Period size: 18 Copynumber: 4.7 Consensus size: 20
32683490 CAAGGTCCTA
*
32683500 TTTT-TTTTATTTATTCTAAT
1 TTTTATTTTATTTATT-TTAT
32683520 TTTTATTTT-TTTATTTTAT
1 TTTTATTTTATTTATTTTAT
* *
32683539 TTTTATTTT-TCT-TTTGAT
1 TTTTATTTTATTTATTTTAT
32683557 TTTTATTTTCATTTCAATTTTAT
1 TTTTATTTT-ATTT--ATTTTAT
*
32683580 TATTATTTTATTT
1 TTTTATTTTATTT
32683593 TGAATGACAT
Statistics
Matches: 61, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
18 14 0.23
19 14 0.23
20 12 0.20
21 4 0.07
22 4 0.07
23 13 0.21
ACGTcount: A:0.18, C:0.04, G:0.01, T:0.76
Consensus pattern (20 bp):
TTTTATTTTATTTATTTTAT
Found at i:32683560 original size:7 final size:6
Alignment explanation
Indices: 32683498--32683593 Score: 70
Period size: 6 Copynumber: 16.0 Consensus size: 6
32683488 TACAAGGTCC
* * * *
32683498 TATTTT TTTTATT TATTCT AATTTT TATTTT TTTATTT TATTTT TATTTT
1 TATTTT TATT-TT TATTTT TATTTT TATTTT TAT-TTT TATTTT TATTTT
* * * * * *
32683548 TCTTTT GATTTT TATTTT CA-TTT CAATTT TATTAT TA-TTT TATTTT
1 TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT
32683594 GAATGACATA
Statistics
Matches: 69, Mismatches: 17, Indels: 8
0.73 0.18 0.09
Matches are distributed among these distances:
5 9 0.13
6 50 0.72
7 10 0.14
ACGTcount: A:0.19, C:0.04, G:0.01, T:0.76
Consensus pattern (6 bp):
TATTTT
Found at i:32688796 original size:55 final size:55
Alignment explanation
Indices: 32688737--32688843 Score: 153
Period size: 55 Copynumber: 1.9 Consensus size: 55
32688727 ACCATGGATG
* * *
32688737 TTCCACACGGGCGT-GTCGCACGCCCGTGTTGTTTTAGCAGGCTAGCCCACGGTTC
1 TTCCACACGGGCGTAAT-GCACGCCCGTGTTGTTCTAGCAGGCTAGACCACGGTTC
* *
32688792 TTCCACACGGGCGTAATGCACGCCCGTGTTGTTCTGGCAGGCTCGACCACGG
1 TTCCACACGGGCGTAATGCACGCCCGTGTTGTTCTAGCAGGCTAGACCACGG
32688844 CCATATCGAA
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
55 45 0.98
56 1 0.02
ACGTcount: A:0.14, C:0.33, G:0.30, T:0.23
Consensus pattern (55 bp):
TTCCACACGGGCGTAATGCACGCCCGTGTTGTTCTAGCAGGCTAGACCACGGTTC
Found at i:32690642 original size:167 final size:167
Alignment explanation
Indices: 32690366--32690701 Score: 672
Period size: 167 Copynumber: 2.0 Consensus size: 167
32690356 CCATGTTGTG
32690366 TCTATAAGGTTGGTATTCTTAATGGTTTGTTCCTCCTCCACTTGCTTCGCACTGCATTACTGGGT
1 TCTATAAGGTTGGTATTCTTAATGGTTTGTTCCTCCTCCACTTGCTTCGCACTGCATTACTGGGT
32690431 GAACCTGTGAAGAATTAAGAAAACCATCAATCTTTTTATTCGAGAGTTTTACCTGATTAGAGAGC
66 GAACCTGTGAAGAATTAAGAAAACCATCAATCTTTTTATTCGAGAGTTTTACCTGATTAGAGAGC
32690496 ATGGTGACCGAATCGACGTTATAAACGCCGGCTGTTT
131 ATGGTGACCGAATCGACGTTATAAACGCCGGCTGTTT
32690533 TCTATAAGGTTGGTATTCTTAATGGTTTGTTCCTCCTCCACTTGCTTCGCACTGCATTACTGGGT
1 TCTATAAGGTTGGTATTCTTAATGGTTTGTTCCTCCTCCACTTGCTTCGCACTGCATTACTGGGT
32690598 GAACCTGTGAAGAATTAAGAAAACCATCAATCTTTTTATTCGAGAGTTTTACCTGATTAGAGAGC
66 GAACCTGTGAAGAATTAAGAAAACCATCAATCTTTTTATTCGAGAGTTTTACCTGATTAGAGAGC
32690663 ATGGTGACCGAATCGACGTTATAAACGCCGGCTGTTT
131 ATGGTGACCGAATCGACGTTATAAACGCCGGCTGTTT
32690700 TC
1 TC
32690702 ATTGACTTTG
Statistics
Matches: 169, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
167 169 1.00
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (167 bp):
TCTATAAGGTTGGTATTCTTAATGGTTTGTTCCTCCTCCACTTGCTTCGCACTGCATTACTGGGT
GAACCTGTGAAGAATTAAGAAAACCATCAATCTTTTTATTCGAGAGTTTTACCTGATTAGAGAGC
ATGGTGACCGAATCGACGTTATAAACGCCGGCTGTTT
Found at i:32692992 original size:122 final size:120
Alignment explanation
Indices: 32692777--32693001 Score: 369
Period size: 122 Copynumber: 1.9 Consensus size: 120
32692767 CCAAAATAAC
* * *
32692777 CATGAGAATGCGAATAGTAATGTCATGGGTATGAGGTTTTCCAAATCTTGATTTAACACGGAATG
1 CATGAGAATGAGAATAGTAATGTCATGGGTATGAGGTTTTCCAAAACTTGATTTAACACGAAATG
32692842 TATGATAACTAACCTAAGAATGAAAATTAAATGATAGACATTGGCATGGTAATAG
66 TATGATAACTAACCTAAGAATGAAAATTAAATGATAGACATTGGCATGGTAATAG
* *
32692897 CATGAGAATGAGCATAGTAATGTCATGGGTATGATGTTTTCCTAATAACTTGATTTAACACGAAA
1 CATGAGAATGAGAATAGTAATGTCATGGGTATGAGGTTTTCC-AA-AACTTGATTTAACACGAAA
* *
32692962 TGTATGATAGCTAACCTAAGAATGCAAATTAAATGATAGA
64 TGTATGATAACTAACCTAAGAATGAAAATTAAATGATAGA
32693002 ATAATTTGCA
Statistics
Matches: 96, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
120 39 0.41
121 2 0.02
122 55 0.57
ACGTcount: A:0.39, C:0.11, G:0.20, T:0.30
Consensus pattern (120 bp):
CATGAGAATGAGAATAGTAATGTCATGGGTATGAGGTTTTCCAAAACTTGATTTAACACGAAATG
TATGATAACTAACCTAAGAATGAAAATTAAATGATAGACATTGGCATGGTAATAG
Found at i:32710511 original size:26 final size:26
Alignment explanation
Indices: 32710455--32710511 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
32710445 TACCTAGACC
* *
32710455 CCCTAGTTGATAAAATGACTATTATG
1 CCCTTGTTGATAAAATAACTATTATG
*
32710481 CCCTTGTTGATAAAATAACTGTTATG
1 CCCTTGTTGATAAAATAACTATTATG
32710507 CCCTT
1 CCCTT
32710512 ATGAGATGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (26 bp):
CCCTTGTTGATAAAATAACTATTATG
Found at i:32715640 original size:25 final size:25
Alignment explanation
Indices: 32715612--32715663 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
32715602 TGGTAGCTTT
*
32715612 TCTTTCTCGTCTTCTCG-TAGATCAG
1 TCTTTCTCGTCTTC-AGATAGATCAG
*
32715637 TCTTTCTTGTCTTCAGATAGATCAG
1 TCTTTCTCGTCTTCAGATAGATCAG
32715662 TC
1 TC
32715664 ACTTTTATGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 1 0.04
25 23 0.96
ACGTcount: A:0.15, C:0.25, G:0.15, T:0.44
Consensus pattern (25 bp):
TCTTTCTCGTCTTCAGATAGATCAG
Found at i:32716812 original size:15 final size:15
Alignment explanation
Indices: 32716794--32716822 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
32716784 TAATAACTTT
32716794 TTTCAACGGTTATAA
1 TTTCAACGGTTATAA
32716809 TTTCAACGGTTATA
1 TTTCAACGGTTATA
32716823 TCCTAACAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.41
Consensus pattern (15 bp):
TTTCAACGGTTATAA
Found at i:32716983 original size:20 final size:20
Alignment explanation
Indices: 32716945--32716983 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
32716935 ATTTCTCTGA
*
32716945 ATTTTATTCTCTTTGATTTT
1 ATTTTATTCTCTTTAATTTT
32716965 ATTTTATTC-CTTATAATTT
1 ATTTTATTCTCTT-TAATTT
32716984 ATAAAATAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.21, C:0.10, G:0.03, T:0.67
Consensus pattern (20 bp):
ATTTTATTCTCTTTAATTTT
Found at i:32729560 original size:11 final size:11
Alignment explanation
Indices: 32729538--32729621 Score: 55
Period size: 11 Copynumber: 7.4 Consensus size: 11
32729528 GTTTAAAATT
32729538 TTTTATTTTTTA
1 TTTTA-TTTTTA
32729550 TTTTATTTTTA
1 TTTTATTTTTA
*
32729561 TTTATCTTCTTTCA
1 TTT-TATT-TTT-A
* *
32729575 GTAT-TTTTTA
1 TTTTATTTTTA
32729585 TTTTA-TTTTA
1 TTTTATTTTTA
* *
32729595 TTTTAATATTA
1 TTTTATTTTTA
*
32729606 TTTTAATTTTA
1 TTTTATTTTTA
32729617 GTTTT
1 -TTTT
32729622 CATAATTTTT
Statistics
Matches: 59, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
10 13 0.22
11 26 0.44
12 14 0.24
13 4 0.07
14 2 0.03
ACGTcount: A:0.20, C:0.04, G:0.02, T:0.74
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:32729608 original size:21 final size:22
Alignment explanation
Indices: 32729582--32729634 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
32729572 TCAGTATTTT
32729582 TTATTTTATTTTA-TTTTAATA
1 TTATTTTATTTTAGTTTTAATA
*
32729603 TTATTTTAATTTTAGTTTTCATA
1 TTATTTT-ATTTTAGTTTTAATA
*
32729626 AT-TTTTATT
1 TTATTTTATT
32729635 GAATAATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 10 0.36
22 10 0.36
23 8 0.29
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (22 bp):
TTATTTTATTTTAGTTTTAATA
Found at i:32729616 original size:6 final size:5
Alignment explanation
Indices: 32729545--32729621 Score: 50
Period size: 5 Copynumber: 14.8 Consensus size: 5
32729535 ATTTTTTATT
* * * *
32729545 TTTTA TTTTA TTTT- TATTTA TCTTC TTTCA GTATT- TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA T-TTTA TTTTA TTTTA -TTTTA TTTTA TTTTA TTTTA
*
32729595 TTTTAA TATTA TTTTAA TTTTA GTTTT
1 TTTT-A TTTTA TTTT-A TTTTA -TTTT
32729622 CATAATTTTT
Statistics
Matches: 55, Mismatches: 10, Indels: 13
0.71 0.13 0.17
Matches are distributed among these distances:
4 4 0.07
5 35 0.64
6 16 0.29
ACGTcount: A:0.21, C:0.04, G:0.03, T:0.73
Consensus pattern (5 bp):
TTTTA
Found at i:32729631 original size:22 final size:22
Alignment explanation
Indices: 32729583--32729632 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
32729573 CAGTATTTTT
*
32729583 TATTTT-ATTTTATTTTAATAT
1 TATTTTAATTTTATTTTAATAA
*
32729604 TATTTTAATTTTAGTTTTCATAA
1 TATTTTAATTTTA-TTTTAATAA
32729627 T-TTTTA
1 TATTTTA
32729633 TTGAATAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 6 0.24
22 11 0.44
23 8 0.32
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (22 bp):
TATTTTAATTTTATTTTAATAA
Found at i:32732970 original size:14 final size:17
Alignment explanation
Indices: 32732951--32732992 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
32732941 TCCAAAAATG
32732951 AATTTATT-TT-A-TTA
1 AATTTATTATTAATTTA
32732965 AATTTATTATTAATTTA
1 AATTTATTATTAATTTA
*
32732982 AATTTAATATT
1 AATTTATTATT
32732993 TATCTTATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 8 0.33
15 2 0.08
16 1 0.04
17 13 0.54
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
AATTTATTATTAATTTA
Found at i:32736854 original size:26 final size:26
Alignment explanation
Indices: 32736823--32736874 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
32736813 ATTCAGTTTG
32736823 AGTATTGATTGAATCGACTATTTGAA
1 AGTATTGATTGAATCGACTATTTGAA
32736849 AGTATTGATTGAATCGACTATTTGAA
1 AGTATTGATTGAATCGACTATTTGAA
32736875 CACCCCTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.38
Consensus pattern (26 bp):
AGTATTGATTGAATCGACTATTTGAA
Found at i:32750172 original size:6 final size:6
Alignment explanation
Indices: 32750161--32750193 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
32750151 TCCTCCTATC
*
32750161 TTTTTA TTTTTA TTTTTA TTTTTA TTTTAA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
32750194 AATTATTTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTTA
Found at i:32766654 original size:3 final size:3
Alignment explanation
Indices: 32766646--32766677 Score: 55
Period size: 3 Copynumber: 10.3 Consensus size: 3
32766636 TTTTATTCCC
32766646 ATT ATT ATT ATT ATT ATT ATT ATT ATTT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT A
32766678 GTCTATTTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:32767282 original size:21 final size:21
Alignment explanation
Indices: 32767236--32767286 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
32767226 TTTATTGTTA
32767236 TTTATTTTAGACCTTTCATATG
1 TTTATTTTAGA-CTTTCATATG
*
32767258 -TTATTTTAGA-TTGTTATATG
1 TTTATTTTAGACTT-TCATATG
32767278 TTTATTTTA
1 TTTATTTTA
32767287 ATTCGCTCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 2 0.08
20 6 0.23
21 18 0.69
ACGTcount: A:0.24, C:0.06, G:0.10, T:0.61
Consensus pattern (21 bp):
TTTATTTTAGACTTTCATATG
Found at i:32769888 original size:21 final size:20
Alignment explanation
Indices: 32769864--32769929 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 20
32769854 AATAAAAATT
32769864 TATAAACAAAGTATATAATAA
1 TATAAACAAA-TATATAATAA
*
32769885 TATAAAC-CATATGATAAGTAA
1 TATAAACAAATAT-ATAA-TAA
* *
32769906 TATAAATATATATAT-ATAA
1 TATAAACAAATATATAATAA
32769925 TATAA
1 TATAA
32769930 TATATAATAA
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
19 11 0.28
20 6 0.15
21 18 0.46
22 4 0.10
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.33
Consensus pattern (20 bp):
TATAAACAAATATATAATAA
Found at i:32769937 original size:12 final size:12
Alignment explanation
Indices: 32769903--32769938 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
32769893 ATATGATAAG
32769903 TAATATA-AATA
1 TAATATATAATA
32769914 TATATATATAATA
1 TA-ATATATAATA
32769927 TAATATATAATA
1 TAATATATAATA
32769939 AAAGGAAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 2 0.09
12 15 0.65
13 6 0.26
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
TAATATATAATA
Found at i:32770032 original size:130 final size:134
Alignment explanation
Indices: 32769820--32770063 Score: 279
Period size: 130 Copynumber: 1.8 Consensus size: 134
32769810 TAAAGTAATG
** * *
32769820 TAAGGAATAATATATGGTAAAATATATAGCATATAATAAAAATTTATAAACAAAGTATATAATAA
1 TAAGGAATAATATATAATAAAATATATAG-A-ATAATAAAAATATATAAACAAAATATATAATAA
* *
32769885 TATAAACCATATGATAA-G-TAATATAAATA-TATATATATAAT-ATAATATATAATAAAAGGAA
64 TATAAAACATATCATAAGGATAATATAAATACTAT-TATATAATAATAATATATAATAAAAGGAA
32769946 GATATTA
128 GATATTA
* * *
32769953 TAAGGAATAATATATAATAAAATATGATAG-GTAAT-AAAATATATAAATAAAATATAGTGA-AA
1 TAAGGAATAATATATAATAAAATAT-ATAGAATAATAAAAATATATAAACAAAATATA-TAATAA
* *
32770015 TATAAATAC-TATCATAAGGATAATATATATACTATTATTTAATAATAAT
64 TATAAA-ACATATCATAAGGATAATATAAATACTATTATATAATAATAAT
32770064 TTTTAAAAAA
Statistics
Matches: 93, Mismatches: 11, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
130 33 0.35
131 8 0.09
132 17 0.18
133 31 0.33
134 4 0.04
ACGTcount: A:0.56, C:0.03, G:0.08, T:0.33
Consensus pattern (134 bp):
TAAGGAATAATATATAATAAAATATATAGAATAATAAAAATATATAAACAAAATATATAATAATA
TAAAACATATCATAAGGATAATATAAATACTATTATATAATAATAATATATAATAAAAGGAAGAT
ATTA
Found at i:32770172 original size:14 final size:14
Alignment explanation
Indices: 32770155--32770190 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
32770145 AATATAAGGA
32770155 ATAATATATA-TAGT
1 ATAATATATAGT-GT
32770169 ATAATATATAGTGT
1 ATAATATATAGTGT
32770183 ATAATATA
1 ATAATATA
32770191 ATTTATAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 20 0.95
15 1 0.05
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (14 bp):
ATAATATATAGTGT
Found at i:32771965 original size:31 final size:31
Alignment explanation
Indices: 32771905--32771973 Score: 88
Period size: 31 Copynumber: 2.2 Consensus size: 31
32771895 AATTATAAAA
*
32771905 TGATCACTCAATTATTATTAAATTTCTTTTT
1 TGATCACTCAATTATTATCAAATTTCTTTTT
*
32771936 TGGTCACTCAATTA-T-TCAAATTTACCTTTTT
1 TGATCACTCAATTATTATCAAATTT--CTTTTT
32771967 TGATCAC
1 TGATCAC
32771974 CCAACTATCT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 7 0.21
30 1 0.03
31 25 0.76
ACGTcount: A:0.28, C:0.17, G:0.06, T:0.49
Consensus pattern (31 bp):
TGATCACTCAATTATTATCAAATTTCTTTTT
Found at i:32772147 original size:57 final size:58
Alignment explanation
Indices: 32772025--32772149 Score: 144
Period size: 57 Copynumber: 2.2 Consensus size: 58
32772015 CCAACTAGTG
* ** *
32772025 ACCAAAAAGACAAAATCGAATAGTTGGGTGACCATTTTGTAACTTTTCATATTTGGGTG
1 ACCAAAAA-ACAAAATCGAATAGTTGGGTGACCATTTTGTAACTTTTCATAGTTAAGTA
* * * * * *
32772084 ATCAAAAAA-AATATCTAATAGTTTGGTGACTATTTTGTAATTTTTCATAGTTAAGTA
1 ACCAAAAAACAAAATCGAATAGTTGGGTGACCATTTTGTAACTTTTCATAGTTAAGTA
32772141 ACCAAAAAA
1 ACCAAAAAA
32772150 GAAACCATAA
Statistics
Matches: 55, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
57 47 0.85
58 1 0.02
59 7 0.13
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.34
Consensus pattern (58 bp):
ACCAAAAAACAAAATCGAATAGTTGGGTGACCATTTTGTAACTTTTCATAGTTAAGTA
Found at i:32774795 original size:7 final size:7
Alignment explanation
Indices: 32774783--32774810 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
32774773 CGTTAGCTTT
32774783 ATTGTTA
1 ATTGTTA
32774790 ATTGTTA
1 ATTGTTA
32774797 ATTGTTA
1 ATTGTTA
32774804 ATTGTTA
1 ATTGTTA
32774811 CCTTAATTGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (7 bp):
ATTGTTA
Found at i:32779564 original size:33 final size:34
Alignment explanation
Indices: 32779487--32779574 Score: 101
Period size: 34 Copynumber: 2.6 Consensus size: 34
32779477 TTTCAGTTAA
*
32779487 GGCCTTAGCCCATTTCAGAATCAGAAACAGTGTG
1 GGCCTAAGCCCATTTCAGAATCAGAAACAGTGTG
* *
32779521 GGCCTGAGCCCATTTCAGTAA-CA-ATATCAGTG-G
1 GGCCTAAGCCCATTTCAG-AATCAGA-AACAGTGTG
*
32779554 GGCCTAAGCCCATTACAGAAT
1 GGCCTAAGCCCATTTCAGAAT
32779575 TAGTATAGTA
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
32 2 0.04
33 18 0.38
34 25 0.53
35 2 0.04
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.23
Consensus pattern (34 bp):
GGCCTAAGCCCATTTCAGAATCAGAAACAGTGTG
Found at i:32781971 original size:60 final size:59
Alignment explanation
Indices: 32781844--32781982 Score: 165
Period size: 60 Copynumber: 2.3 Consensus size: 59
32781834 ATCAGTGTTA
* *
32781844 ATTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTATCAGAGTAT
1 ATTGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAG-ATCAGAGTAT
* * *
32781905 ACTGGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACA-AGTC-GAGATAT
1 ATTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCC-ATTACAGA-TCAGAG-TAT
*
32781965 ATTGGGCCTTGCCCATAT
1 ATTGGGCCTAGCCCATAT
32781983 TAACACAGTT
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
59 4 0.06
60 52 0.76
61 12 0.18
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (59 bp):
ATTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGATCAGAGTAT
Found at i:32782029 original size:19 final size:20
Alignment explanation
Indices: 32781975--32782030 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 20
32781965 ATTGGGCCTT
*
32781975 GCCCATATTAACACAGTTGG
1 GCCCATATTAAAACAGTTGG
*
32781995 GCCCAT-TTCAATACAGTT-G
1 GCCCATATT-AAAACAGTTGG
*
32782014 GCCCATAATAAAACAGT
1 GCCCATATTAAAACAGT
32782031 CTCATATGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
19 16 0.52
20 15 0.48
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (20 bp):
GCCCATATTAAAACAGTTGG
Found at i:32784054 original size:19 final size:18
Alignment explanation
Indices: 32784017--32784060 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
32784007 ATACATGCAG
32784017 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
32784034 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
32784053 TACTAATT
1 TAATAATT
32784061 AAAATTTCGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:32784590 original size:36 final size:35
Alignment explanation
Indices: 32784523--32784592 Score: 86
Period size: 36 Copynumber: 2.0 Consensus size: 35
32784513 CTCACTTCAA
* * * *
32784523 ATCTCCCTTAACTCTCTCTTAAAATCTCTCCACAT
1 ATCTCCCTCAACTCCCTCCTAAAATCCCTCCACAT
*
32784558 ATCTCTCCTCAACTCCCTCCTACAATCCCTCCACA
1 ATCTC-CCTCAACTCCCTCCTAAAATCCCTCCACA
32784593 ACTAGTTCAA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
35 5 0.17
36 24 0.83
ACGTcount: A:0.24, C:0.44, G:0.00, T:0.31
Consensus pattern (35 bp):
ATCTCCCTCAACTCCCTCCTAAAATCCCTCCACAT
Found at i:32787976 original size:18 final size:19
Alignment explanation
Indices: 32787943--32787979 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
32787933 TCGCTGGACT
32787943 AGGGTTAAAGGTGTTACCA
1 AGGGTTAAAGGTGTTACCA
32787962 AGGGTTAAA-GTGTTACCA
1 AGGGTTAAAGGTGTTACCA
32787980 GACGAATCGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (19 bp):
AGGGTTAAAGGTGTTACCA
Found at i:32789827 original size:43 final size:42
Alignment explanation
Indices: 32789771--32789870 Score: 101
Period size: 42 Copynumber: 2.3 Consensus size: 42
32789761 CAGATGTGGC
* * * *
32789771 CTTACATGTAATCAAATATCAATGCCACTATCCCAGACAGGGT
1 CTTACACGAAATCAAAGA-CAATGCCAATATCCCAGACAGGGT
* * * *
32789814 CTTACACGAAATCATAGACGATGCCAATGTCCCAGACATGGT
1 CTTACACGAAATCAAAGACAATGCCAATATCCCAGACAGGGT
*
32789856 TTTACACGTAAATCA
1 CTTACACG-AAATCA
32789871 CAAATCGATG
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
42 27 0.57
43 20 0.43
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (42 bp):
CTTACACGAAATCAAAGACAATGCCAATATCCCAGACAGGGT
Found at i:32793601 original size:26 final size:26
Alignment explanation
Indices: 32793565--32793617 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
32793555 TCTCATAGGA
32793565 TAAGAATTCCTTCTGAAATTAAACAG
1 TAAGAATTCCTTCTGAAATTAAACAG
32793591 TAAGAATTCCTTCTGAAATTAAACAG
1 TAAGAATTCCTTCTGAAATTAAACAG
32793617 T
1 T
32793618 CACATATATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.42, C:0.15, G:0.11, T:0.32
Consensus pattern (26 bp):
TAAGAATTCCTTCTGAAATTAAACAG
Found at i:32796454 original size:42 final size:43
Alignment explanation
Indices: 32796364--32796479 Score: 123
Period size: 43 Copynumber: 2.7 Consensus size: 43
32796354 TCCCAGACGC
* *
32796364 GGTCTTACATGTAATCAAATATCGATGCC-ATTGTCCCAGAAA
1 GGTCTTACACGAAATCAAATATCGATGCCAATTGTCCCAGAAA
* * *
32796406 GTGTCTTACACGAAATCATATAT-GATGCCAATT-TTCCAGACAT
1 G-GTCTTACACGAAATCAAATATCGATGCCAATTGTCCCAGA-AA
*
32796449 GGTCTTTCACGAAATCACAA-ATCGATGCCAA
1 GGTCTTACACGAAATCA-AATATCGATGCCAA
32796480 CGCCCCAAAA
Statistics
Matches: 62, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
42 30 0.48
43 32 0.52
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28
Consensus pattern (43 bp):
GGTCTTACACGAAATCAAATATCGATGCCAATTGTCCCAGAAA
Found at i:32800121 original size:43 final size:43
Alignment explanation
Indices: 32800010--32800124 Score: 153
Period size: 43 Copynumber: 2.7 Consensus size: 43
32800000 TGTGTTTTCG
* *
32800010 TGTAAGACCACGTCTGGGACGTTGGCA-TCATATTTGATTTCA
1 TGTAAGACCACGTCTGGGACGTTGGCATTGATATTTGATTACA
* **
32800052 TGTAAGACC-CTATCTGGGACAATGGCATTGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGACGTTGGCATTGATATTTGATTACA
*
32800095 TGTAAGACCACGTCTGGGATGTTGGCATTG
1 TGTAAGACCACGTCTGGGACGTTGGCATTG
32800125 TACAAACTTT
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
41 1 0.02
42 22 0.36
43 37 0.61
44 1 0.02
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.32
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATTGATATTTGATTACA
Found at i:32800842 original size:34 final size:34
Alignment explanation
Indices: 32800759--32800843 Score: 109
Period size: 34 Copynumber: 2.5 Consensus size: 34
32800749 GGTCATTTTG
* *
32800759 GGTAAGATTGTGGTAAGTGCTTATTTTGGAGTTT
1 GGTAAGATTGTGGTATGTGCTTATTTTGGAGATT
* *
32800793 GGTAAGTTTTTGGTATGTGCTTAATTTTGGA-ATT
1 GGTAAGATTGTGGTATGTGCTT-ATTTTGGAGATT
*
32800827 GGTAAGAATGTGGTATG
1 GGTAAGATTGTGGTATG
32800844 AAATTGAATA
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
34 35 0.81
35 8 0.19
ACGTcount: A:0.22, C:0.02, G:0.32, T:0.44
Consensus pattern (34 bp):
GGTAAGATTGTGGTATGTGCTTATTTTGGAGATT
Found at i:32805052 original size:20 final size:20
Alignment explanation
Indices: 32805027--32805064 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
32805017 GTCACATATA
32805027 TCATGAACTCAGACCACAAC
1 TCATGAACTCAGACCACAAC
* *
32805047 TCATGAGCTCAGATCACA
1 TCATGAACTCAGACCACA
32805065 GAGTTCCTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.32, G:0.13, T:0.18
Consensus pattern (20 bp):
TCATGAACTCAGACCACAAC
Found at i:32807701 original size:35 final size:35
Alignment explanation
Indices: 32807662--32807737 Score: 93
Period size: 35 Copynumber: 2.2 Consensus size: 35
32807652 AATTTAATTT
32807662 ATATTTT-ATTATCTGATT-TAAATATAATTTGTAAA
1 ATATTTTGA-TATCTGATTATAAATATAATTT-TAAA
* * *
32807697 ATATTTTGATATTTTATTATGAATATAATTTTAAA
1 ATATTTTGATATCTGATTATAAATATAATTTTAAA
32807732 ATATTT
1 ATATTT
32807738 AAATTTTATT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
35 24 0.67
36 12 0.33
ACGTcount: A:0.39, C:0.01, G:0.05, T:0.54
Consensus pattern (35 bp):
ATATTTTGATATCTGATTATAAATATAATTTTAAA
Found at i:32809506 original size:26 final size:26
Alignment explanation
Indices: 32809449--32809518 Score: 70
Period size: 26 Copynumber: 2.7 Consensus size: 26
32809439 AATTTTCTTG
* * *
32809449 AAATTTTACCA-GGGAAAAATTGTCA
1 AAATTTTACTAGGGGTAAAATCGTCA
* *
32809474 AATTTTTACTAGGGGTAAAATCGTTA
1 AAATTTTACTAGGGGTAAAATCGTCA
* *
32809500 AAATTTTATTGGGGGTAAA
1 AAATTTTACTAGGGGTAAA
32809519 GTAGGGATGA
Statistics
Matches: 36, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
25 9 0.25
26 27 0.75
ACGTcount: A:0.39, C:0.07, G:0.20, T:0.34
Consensus pattern (26 bp):
AAATTTTACTAGGGGTAAAATCGTCA
Found at i:32812754 original size:27 final size:27
Alignment explanation
Indices: 32812615--32812743 Score: 195
Period size: 27 Copynumber: 4.8 Consensus size: 27
32812605 CTTACCATAA
*
32812615 AAGGGAAAAACAATCATTTTACCCCAT
1 AAGGGCAAAACAATCATTTTACCCCAT
32812642 AAGGGCAAAACAATCATTTTACCCCAT
1 AAGGGCAAAACAATCATTTTACCCCAT
*
32812669 AAGGGCAAAACAATCATTTTACCACAT
1 AAGGGCAAAACAATCATTTTACCCCAT
* * *
32812696 AAAGGCAAAATAGTCATTTTACCCCAT
1 AAGGGCAAAACAATCATTTTACCCCAT
* *
32812723 AAGGGCAAAATAGTCATTTTA
1 AAGGGCAAAACAATCATTTTA
32812744 TCGATTAAGG
Statistics
Matches: 95, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 95 1.00
ACGTcount: A:0.43, C:0.21, G:0.12, T:0.24
Consensus pattern (27 bp):
AAGGGCAAAACAATCATTTTACCCCAT
Found at i:32812886 original size:18 final size:18
Alignment explanation
Indices: 32812860--32812901 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
32812850 CATATTGCGG
32812860 GCCCATGTGGGCCCATAT-
1 GCCCATGT-GGCCCATATA
*
32812878 GCCCGTGTGGCCCATATA
1 GCCCATGTGGCCCATATA
32812896 GCCCAT
1 GCCCAT
32812902 AAATGGCCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.17, C:0.36, G:0.26, T:0.21
Consensus pattern (18 bp):
GCCCATGTGGCCCATATA
Found at i:32816659 original size:56 final size:56
Alignment explanation
Indices: 32816599--32816727 Score: 186
Period size: 56 Copynumber: 2.3 Consensus size: 56
32816589 AGACAGGGTT
* *
32816599 TTACTTGCACACATGTAACAGAATCACATATCGATGCCAACGTATTAAATGCGGTC
1 TTACTTGCACACATATAACAGAATCACATATCGACGCCAACGTATTAAATGCGGTC
* * * *
32816655 TTACTTGCACACATATAACGGGATCACATATCGACGCCAACGTATTACATGTGGTC
1 TTACTTGCACACATATAACAGAATCACATATCGACGCCAACGTATTAAATGCGGTC
**
32816711 TTACCCGCACACATATA
1 TTACTTGCACACATATA
32816728 TCGATGCCAT
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 65 1.00
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.26
Consensus pattern (56 bp):
TTACTTGCACACATATAACAGAATCACATATCGACGCCAACGTATTAAATGCGGTC
Found at i:32821052 original size:40 final size:40
Alignment explanation
Indices: 32820997--32821133 Score: 247
Period size: 40 Copynumber: 3.4 Consensus size: 40
32820987 TGTGCATAGT
*
32820997 ATTCGTGCGGGTTATTGTAACCGGGTTAAGTCCCGAAGGC
1 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
*
32821037 ATTCGTGCGGGTTATTATAACCGGGGTAAGTCCCGAAGGC
1 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
32821077 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
1 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
*
32821117 ATTCGTGCTGGTTATTA
1 ATTCGTGCGGGTTATTA
32821134 CATCCGAGCC
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 93 1.00
ACGTcount: A:0.21, C:0.19, G:0.31, T:0.29
Consensus pattern (40 bp):
ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
Found at i:32827668 original size:40 final size:40
Alignment explanation
Indices: 32827613--32827719 Score: 169
Period size: 40 Copynumber: 2.7 Consensus size: 40
32827603 NNNNNNNNNN
32827613 TAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCGGGC
1 TAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCGGGC
* * *
32827653 TAAGTCCCGAAGGCATTCGTGCGAGTTATTATTACCGGGT
1 TAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCGGGC
* *
32827693 TAAGTCTCGAAGGCATTCGTGCTGGTT
1 TAAGTCCCGAAGGCATTCGTGCGGGTT
32827720 GTTACATCCG
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 61 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCGGGC
Found at i:32831093 original size:22 final size:18
Alignment explanation
Indices: 32831046--32831083 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
32831036 CTTCGATGCT
32831046 ATAATGTTTATGAAATGA
1 ATAATGTTTATGAAATGA
32831064 ATAATGTTTATGAAATGA
1 ATAATGTTTATGAAATGA
32831082 AT
1 AT
32831084 GTTAAATGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.16, T:0.39
Consensus pattern (18 bp):
ATAATGTTTATGAAATGA
Found at i:32831191 original size:52 final size:52
Alignment explanation
Indices: 32831108--32831208 Score: 132
Period size: 52 Copynumber: 1.9 Consensus size: 52
32831098 ATTGTCCGAA
** * *
32831108 AATGCCTTTAACCCTAGTCCGGCGACGGATACGAGTTAGGGGTGTTACAGGT
1 AATGCCTTTAACCCTAGTCCAACGACAGATACGAGTTAGGGGAGTTACAGGT
* *
32831160 AATGCCTCTTAA-CCTATTCCAACGACAGATACGGGTTAGGGGAGTTACA
1 AATGCCT-TTAACCCTAGTCCAACGACAGATACGAGTTAGGGGAGTTACA
32831209 ATTGGAGTAT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
52 38 0.90
53 4 0.10
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (52 bp):
AATGCCTTTAACCCTAGTCCAACGACAGATACGAGTTAGGGGAGTTACAGGT
Found at i:32841779 original size:27 final size:27
Alignment explanation
Indices: 32841749--32842078 Score: 326
Period size: 27 Copynumber: 12.2 Consensus size: 27
32841739 AACACCCTAG
*
32841749 GGGTAAAATAGTAATTTTATAAACCGA
1 GGGTAAAATAGTAATTTTATAAATCGA
* *
32841776 GGGTAAAA-CGATAATTCTATAAATCGA
1 GGGTAAAATAG-TAATTTTATAAATCGA
*
32841803 GGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTTTATAAATCGA
* * * *
32841830 GGGTAAAACAGTAATTTTGTCAATCAA
1 GGGTAAAATAGTAATTTTATAAATCGA
** *
32841857 GGGTAAAACGGTAATTCTT-TAAATAGA
1 GGGTAAAATAGTAATT-TTATAAATCGA
*
32841884 GGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTTTATAAATCGA
** * *
32841911 GGGTAAAACGGTAATTCTATAAATTGA
1 GGGTAAAATAGTAATTTTATAAATCGA
* * *
32841938 GGGTAAAATAATAATTCTATAAATCAA
1 GGGTAAAATAGTAATTTTATAAATCGA
* * *
32841965 TGGTAAAA-CGATAATTTTGTAAATCGA
1 GGGTAAAATAG-TAATTTTATAAATCGA
* *
32841992 GGGTAAAA-CGATAATTTTATAAATCAA
1 GGGTAAAATAG-TAATTTTATAAATCGA
* * *
32842019 GGGTAAAATAGTAATTATGTAAATTGA
1 GGGTAAAATAGTAATTTTATAAATCGA
* *
32842046 GGGTAAAATAGTAATTTTTGTAATTCGA
1 GGGTAAAATAGTAA-TTTTATAAATCGA
32842074 GGGTA
1 GGGTA
32842079 CTTTGATAAT
Statistics
Matches: 253, Mismatches: 43, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
26 3 0.01
27 231 0.91
28 19 0.08
ACGTcount: A:0.42, C:0.06, G:0.20, T:0.31
Consensus pattern (27 bp):
GGGTAAAATAGTAATTTTATAAATCGA
Found at i:32841886 original size:81 final size:81
Alignment explanation
Indices: 32841749--32842078 Score: 396
Period size: 81 Copynumber: 4.1 Consensus size: 81
32841739 AACACCCTAG
* * * * *
32841749 GGGTAAAATAGTAATTTTATAAACCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATAG
1 GGGTAAAACAGTAATTTTATAAATCAAGGGTAAAACAATAATTCTATAAATAGAGGGTAAAATAG
32841814 TAATTTTGTAAATCGA
66 TAATTTTGTAAATCGA
* * ** *
32841830 GGGTAAAACAGTAATTTTGTCAATCAAGGGTAAAACGGTAATTCTTTAAATAGAGGGTAAAATAG
1 GGGTAAAACAGTAATTTTATAAATCAAGGGTAAAACAATAATTCTATAAATAGAGGGTAAAATAG
32841895 TAATTTTGTAAATCGA
66 TAATTTTGTAAATCGA
* * ** * * *
32841911 GGGTAAAACGGTAATTCTATAAATTGAGGGTAAAATAATAATTCTATAAATCA-ATGGTAAAA-C
1 GGGTAAAACAGTAATTTTATAAATCAAGGGTAAAACAATAATTCTATAAAT-AGAGGGTAAAATA
32841974 GATAATTTTGTAAATCGA
65 G-TAATTTTGTAAATCGA
* * * * *
32841992 GGGTAAAAC-GATAATTTTATAAATCAAGGGTAAAATAGTAATTATGTAAATTGAGGGTAAAATA
1 GGGTAAAACAG-TAATTTTATAAATCAAGGGTAAAACAATAATTCTATAAATAGAGGGTAAAATA
*
32842056 GTAATTTTTGTAATTCGA
65 GTAA-TTTTGTAAATCGA
32842074 GGGTA
1 GGGTA
32842079 CTTTGATAAT
Statistics
Matches: 213, Mismatches: 30, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
80 2 0.01
81 192 0.90
82 19 0.09
ACGTcount: A:0.42, C:0.06, G:0.20, T:0.31
Consensus pattern (81 bp):
GGGTAAAACAGTAATTTTATAAATCAAGGGTAAAACAATAATTCTATAAATAGAGGGTAAAATAG
TAATTTTGTAAATCGA
Found at i:32842104 original size:55 final size:54
Alignment explanation
Indices: 32842044--32842148 Score: 126
Period size: 54 Copynumber: 1.9 Consensus size: 54
32842034 TATGTAAATT
32842044 GAGGGTAAAAT-AGTAATTTTTGT-AATTCGAGGGTACTTT-GATAATTTTACATGTC
1 GAGGGT-AAATCAGTAA-TTTTGTAAATT-GAGGGTA-TTTCGATAATTTTACATGTC
** *
32842099 GAGGGTATTTCAGTAATTTTGTAAATTGAGGGTATTTCGGTAATTTTACA
1 GAGGGTAAATCAGTAATTTTGTAAATTGAGGGTATTTCGATAATTTTACA
32842149 AATCGAGGAT
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
53 3 0.07
54 26 0.59
55 15 0.34
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.41
Consensus pattern (54 bp):
GAGGGTAAATCAGTAATTTTGTAAATTGAGGGTATTTCGATAATTTTACATGTC
Found at i:32842143 original size:54 final size:54
Alignment explanation
Indices: 32842055--32842230 Score: 189
Period size: 54 Copynumber: 3.3 Consensus size: 54
32842045 AGGGTAAAAT
* **
32842055 AGTAATTTTTGT-AATTCGAGGGTACTTTGATAATTTTACATGTCGAGGGTATTTC
1 AGTAA-TTTTGTAAATT-GAGGGTACTTTGGTAATTTTACAAATCGAGGGTATTTC
* *
32842110 AGTAATTTTGTAAATTGAGGGTA-TTTCGGTAATTTTACAAATCGAGGATATTTG
1 AGTAATTTTGTAAATTGAGGGTACTTT-GGTAATTTTACAAATCGAGGGTATTTC
* * * * *
32842164 GGTAATTTTATAAACTGGGGGTACTTTGGTAATTTTACAACT-G-GTGGTATTTC
1 AGTAATTTTGTAAATTGAGGGTACTTTGGTAATTTTACAAATCGAG-GGTATTTC
*
32842217 AGTAATTTGGTAAA
1 AGTAATTTTGTAAA
32842231 CTAAAGTATT
Statistics
Matches: 102, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
52 1 0.01
53 21 0.21
54 68 0.67
55 12 0.12
ACGTcount: A:0.28, C:0.07, G:0.23, T:0.41
Consensus pattern (54 bp):
AGTAATTTTGTAAATTGAGGGTACTTTGGTAATTTTACAAATCGAGGGTATTTC
Found at i:32842173 original size:27 final size:27
Alignment explanation
Indices: 32842070--32842224 Score: 122
Period size: 27 Copynumber: 5.8 Consensus size: 27
32842060 TTTTTGTAAT
* **
32842070 TCGAGGGTACTTT-GATAATTTTACATG
1 TCGAGGGTA-TTTCGGTAATTTTACAAA
* **
32842097 TCGAGGGTATTTCAGTAATTTTGTAAA
1 TCGAGGGTATTTCGGTAATTTTACAAA
*
32842124 TTGAGGGTATTTCGGTAATTTTACAAA
1 TCGAGGGTATTTCGGTAATTTTACAAA
* * *
32842151 TCGAGGATATTTGGGTAATTTTATAAA
1 TCGAGGGTATTTCGGTAATTTTACAAA
* *
32842178 -CTGGGGGTACTTT-GGTAATTTTACAAC
1 TC-GAGGGTA-TTTCGGTAATTTTACAAA
*
32842205 T-G-GTGGTATTTCAGTAATTT
1 TCGAG-GGTATTTCGGTAATTT
32842225 GGTAAACTAA
Statistics
Matches: 103, Mismatches: 19, Indels: 13
0.76 0.14 0.10
Matches are distributed among these distances:
25 4 0.04
26 16 0.16
27 80 0.78
28 3 0.03
ACGTcount: A:0.27, C:0.08, G:0.23, T:0.41
Consensus pattern (27 bp):
TCGAGGGTATTTCGGTAATTTTACAAA
Found at i:32847171 original size:27 final size:27
Alignment explanation
Indices: 32847129--32847240 Score: 129
Period size: 27 Copynumber: 4.1 Consensus size: 27
32847119 AGGAAGCGTC
*
32847129 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
* *
32847156 CTGGTGGCTCTACCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
32847183 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
32847211 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
32847237 CTGG
1 CTGG
32847241 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 8 0.11
27 47 0.64
28 18 0.25
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:32847235 original size:54 final size:54
Alignment explanation
Indices: 32847129--32847240 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
32847119 AGGAAGCGTC
* *
32847129 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATATATCTGTT
* * **
32847183 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTACCACATATATCTGTT
32847237 CTGG
1 CTGG
32847241 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATATATCTGTT
Found at i:32850570 original size:88 final size:88
Alignment explanation
Indices: 32850425--32850612 Score: 247
Period size: 88 Copynumber: 2.1 Consensus size: 88
32850415 GCGAACTCGG
* * * *
32850425 ACTCA-ACTCAACGAGCTCGAGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAACGGGTTC
1 ACTCAGACTCAACGAGCTCGAGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAACGAGCTC
*
32850489 -GAATGCCTAGTTACATTTCACGA
66 AG-ATGCCTAGTTACATCTCACGA
* * *
32850512 ACTCAGACTCAACGAGTTCG-GATGTTCGCATCCATAATTGAACTCAGACTCAACTCAACGAGCT
1 ACTCAGACTCAACGAGCTCGAG-CGTTCGCATCCATAAGTGAACTCAGACTCAACTCAACGAGCT
*
32850576 CAGATGCCTAGTTACATCTCTCGA
65 CAGATGCCTAGTTACATCTCACGA
*
32850600 ACTCGGACTCAAC
1 ACTCAGACTCAAC
32850613 TCAACGAGTT
Statistics
Matches: 88, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
87 6 0.07
88 81 0.92
89 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (88 bp):
ACTCAGACTCAACGAGCTCGAGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAACGAGCTC
AGATGCCTAGTTACATCTCACGA
Found at i:32857737 original size:27 final size:26
Alignment explanation
Indices: 32857689--32857739 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
32857679 ACGAGGCTGC
*
32857689 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
32857715 CAGATATATGTGGCGAGGCCACCAG
1 CAGATAT-TGTGACGAAGCCACCAG
32857740 CCACGAGGCT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 7 0.33
27 14 0.67
ACGTcount: A:0.33, C:0.22, G:0.27, T:0.18
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:32858003 original size:27 final size:27
Alignment explanation
Indices: 32857973--32858285 Score: 412
Period size: 27 Copynumber: 11.6 Consensus size: 27
32857963 AACACCCTAG
** * * *
32857973 GGGTAAAATGGTAATTTTATAAATTGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
32858000 GGGTAAAAC-GATAATTCTGTAAATCGA
1 GGGTAAAACAG-TAATTCTGTAAATCGA
*
32858027 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* *
32858054 GGGTAAAATAGTAATTCTGTCAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
*
32858081 GGGTAAAACAGTAATTCTGTCAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
*
32858108 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
*
32858135 GGGTAAAATAGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* *
32858162 GGGTAAAACAATAATTCTATAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* * *
32858189 GGGTACAACGGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* * * * *
32858216 GGGTAAAACTGAAATTTTATAAATCAA
1 GGGTAAAACAGTAATTCTGTAAATCGA
32858243 GGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
*
32858270 TGGTAAAACAGTAATT
1 GGGTAAAACAGTAATT
32858286 TTTTTAATTC
Statistics
Matches: 252, Mismatches: 32, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
26 1 0.00
27 250 0.99
28 1 0.00
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.29
Consensus pattern (27 bp):
GGGTAAAACAGTAATTCTGTAAATCGA
Found at i:32858086 original size:81 final size:81
Alignment explanation
Indices: 32857973--32858302 Score: 466
Period size: 81 Copynumber: 4.1 Consensus size: 81
32857963 AACACCCTAG
* * *
32857973 GGGTAAAATGGTAATTTTATAAATTGAGGGTAAAAC-GATAATTCTGTAAATCGAGGGTAAAACA
1 GGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACAG-TAATTCTGTAAATCGAGGGTAAAACA
32858037 GTAATTTTGTAAATCGA
65 GTAATTTTGTAAATCGA
* * *
32858054 GGGTAAAATAGTAATTCTGTCAATCGAGGGTAAAACAGTAATTCTGTCAATCGAGGGTAAAACAG
1 GGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAG
32858119 TAATTTTGTAAATCGA
66 TAATTTTGTAAATCGA
* * * * *
32858135 GGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACAATAATTCTATAAATCGAGGGTACAACGG
1 GGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAG
32858200 TAATTTTGTAAATCGA
66 TAATTTTGTAAATCGA
* * * *
32858216 GGGTAAAACT-GAAATTTTATAAATCAAGGGTAAAACAGTAATTCTGTAAATCGATGGTAAAACA
1 GGGTAAAA-TAGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACA
* *
32858280 GTAATTTTTTTAATTCGA
65 GTAA-TTTTGTAAATCGA
32858298 GGGTA
1 GGGTA
32858303 CTTTGATAAT
Statistics
Matches: 223, Mismatches: 23, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
81 205 0.92
82 18 0.08
ACGTcount: A:0.40, C:0.09, G:0.21, T:0.30
Consensus pattern (81 bp):
GGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAG
TAATTTTGTAAATCGA
Found at i:32858324 original size:27 final size:25
Alignment explanation
Indices: 32858287--32858371 Score: 75
Period size: 27 Copynumber: 3.2 Consensus size: 25
32858277 ACAGTAATTT
*
32858287 TTTTAATTCGAGGGTACTTTGA-TAA
1 TTTTAATTCGAGGGTA-TTTCAGTAA
32858312 TTTTACATGTCGAGGGTATTTCAGTAA
1 TTTTA-AT-TCGAGGGTATTTCAGTAA
* *
32858339 TTTTGCAA-ACTGAGGGTATTTCGGTAA
1 TTTT--AATTC-GAGGGTATTTCAGTAA
32858366 TTTTAA
1 TTTTAA
32858372 AAATTGAGGA
Statistics
Matches: 51, Mismatches: 3, Indels: 12
0.77 0.05 0.18
Matches are distributed among these distances:
25 7 0.14
26 7 0.14
27 35 0.69
28 1 0.02
29 1 0.02
ACGTcount: A:0.27, C:0.09, G:0.21, T:0.42
Consensus pattern (25 bp):
TTTTAATTCGAGGGTATTTCAGTAA
Found at i:32858368 original size:54 final size:53
Alignment explanation
Indices: 32858294--32858448 Score: 152
Period size: 54 Copynumber: 2.9 Consensus size: 53
32858284 TTTTTTTAAT
* ** *
32858294 TCGAGGGTACTTTGATAATTTTACATGTCGAGGGTATTTCAGTAATTTTGCAAA
1 TCGAGGGTACTTTGGTAATTTTACAAAT-GAGGGTATTTCAGTAATTTTACAAA
* * ** *
32858348 -CTGAGGGTA-TTTCGGTAATTTTAAAAATTGAGGATATTTGGGTAATTTTATAAA
1 TC-GAGGGTACTTT-GGTAATTTTACAAA-TGAGGGTATTTCAGTAATTTTACAAA
* * *
32858402 TCGGGGGTACTTTGGTAATTTTACAACTGGGGGTATTTCAGTAATTT
1 TCGAGGGTACTTTGGTAATTTTACAAATGAGGGTATTTCAGTAATTT
32858449 GGTAAATTAA
Statistics
Matches: 80, Mismatches: 16, Indels: 11
0.75 0.15 0.10
Matches are distributed among these distances:
53 20 0.25
54 55 0.69
55 5 0.06
ACGTcount: A:0.28, C:0.08, G:0.24, T:0.40
Consensus pattern (53 bp):
TCGAGGGTACTTTGGTAATTTTACAAATGAGGGTATTTCAGTAATTTTACAAA
Found at i:32858379 original size:27 final size:27
Alignment explanation
Indices: 32858323--32858448 Score: 114
Period size: 27 Copynumber: 4.7 Consensus size: 27
32858313 TTTACATGTC
* **
32858323 GAGGGTATTTCAGTAATTTTGCAAACT
1 GAGGGTATTTCGGTAATTTTAAAAACT
*
32858350 GAGGGTATTTCGGTAATTTTAAAAATT
1 GAGGGTATTTCGGTAATTTTAAAAACT
* * *
32858377 GAGGATATTTGGGTAATTTTATAAA-T
1 GAGGGTATTTCGGTAATTTTAAAAACT
* *
32858403 CGGGGGTACTTT-GGTAATTTT-ACAACT
1 -GAGGGTA-TTTCGGTAATTTTAAAAACT
* *
32858430 GGGGGTATTTCAGTAATTT
1 GAGGGTATTTCGGTAATTT
32858449 GGTAAATTAA
Statistics
Matches: 83, Mismatches: 12, Indels: 9
0.80 0.12 0.09
Matches are distributed among these distances:
25 3 0.04
26 17 0.20
27 60 0.72
28 3 0.04
ACGTcount: A:0.29, C:0.07, G:0.25, T:0.40
Consensus pattern (27 bp):
GAGGGTATTTCGGTAATTTTAAAAACT
Found at i:32858445 original size:26 final size:26
Alignment explanation
Indices: 32858296--32858448 Score: 112
Period size: 27 Copynumber: 5.7 Consensus size: 26
32858286 TTTTTAATTC
* **
32858296 GAGGGTACTTT-GATAATTTTACATGT
1 GAGGGTA-TTTCGGTAATTTTACAACT
* *
32858322 CGAGGGTATTTCAGTAATTTTGCAAACT
1 -GAGGGTATTTCGGTAATTTTAC-AACT
* *
32858350 GAGGGTATTTCGGTAATTTTAAAAATT
1 GAGGGTATTTCGGTAATTTT-ACAACT
* * * *
32858377 GAGGATATTTGGGTAATTTTATAAAT
1 GAGGGTATTTCGGTAATTTTACAACT
*
32858403 CGGGGGTACTTT-GGTAATTTTACAACT
1 -GAGGGTA-TTTCGGTAATTTTACAACT
* *
32858430 GGGGGTATTTCAGTAATTT
1 GAGGGTATTTCGGTAATTT
32858449 GGTAAATTAA
Statistics
Matches: 102, Mismatches: 18, Indels: 13
0.77 0.14 0.10
Matches are distributed among these distances:
25 3 0.03
26 21 0.21
27 73 0.72
28 5 0.05
ACGTcount: A:0.28, C:0.08, G:0.24, T:0.40
Consensus pattern (26 bp):
GAGGGTATTTCGGTAATTTTACAACT
Found at i:32859064 original size:45 final size:45
Alignment explanation
Indices: 32858948--32859054 Score: 169
Period size: 45 Copynumber: 2.4 Consensus size: 45
32858938 AATTCAGGGT
*
32858948 GTTACAGTGTAAGACCACGTATGGGACGTTGGCATCGATATATGTG
1 GTTAC-GTGTAAGACCACGTATGGGACGTTGGCATCAATATATGTG
* * *
32858994 TTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCAATATATGTG
1 GTTACGTGTAAGACCACGTATGGGACGTTGGCATCAATATATGTG
32859039 GTTACGTGTAAGACCA
1 GTTACGTGTAAGACCA
32859055 TGCTTGGGAC
Statistics
Matches: 55, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
45 52 0.95
46 3 0.05
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (45 bp):
GTTACGTGTAAGACCACGTATGGGACGTTGGCATCAATATATGTG
Found at i:32870136 original size:31 final size:31
Alignment explanation
Indices: 32870079--32870139 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
32870069 ATGAAATTGT
* *
32870079 TTTGGAATATTAATGAGGAGGTCTTAAATAG
1 TTTGGAATATTAATAAGGAGGCCTTAAATAG
32870110 TTTGGAATATTAATTAAGG-GGCCTTAAATA
1 TTTGGAATATTAA-TAAGGAGGCCTTAAATA
32870140 TCAATTTGAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
31 23 0.85
32 4 0.15
ACGTcount: A:0.36, C:0.05, G:0.23, T:0.36
Consensus pattern (31 bp):
TTTGGAATATTAATAAGGAGGCCTTAAATAG
Found at i:32871267 original size:46 final size:46
Alignment explanation
Indices: 32871174--32871297 Score: 196
Period size: 46 Copynumber: 2.7 Consensus size: 46
32871164 GAGATCTGAA
*
32871174 CTCGTTGAGTTGCGTTCCGAGTTCACTTATGGATGCAAGCATCCGAG
1 CTCGTTGAGTTGCGTTCCGAGTTCA-TTATGGATGCAAGCACCCGAG
* *
32871221 CTCGTTGAGTTGTGTTCCGAGTTCATTATGGATGTGAA-CACCCGAG
1 CTCGTTGAGTTGCGTTCCGAGTTCATTATGGATG-CAAGCACCCGAG
32871267 CTCGTTGAGTTGCGTTCCGAGTTCATTATGG
1 CTCGTTGAGTTGCGTTCCGAGTTCATTATGG
32871298 GTGAAATTAT
Statistics
Matches: 72, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
46 46 0.64
47 26 0.36
ACGTcount: A:0.18, C:0.21, G:0.28, T:0.33
Consensus pattern (46 bp):
CTCGTTGAGTTGCGTTCCGAGTTCATTATGGATGCAAGCACCCGAG
Found at i:32877131 original size:137 final size:137
Alignment explanation
Indices: 32876859--32877124 Score: 487
Period size: 137 Copynumber: 1.9 Consensus size: 137
32876849 CCTAAATGTG
* *
32876859 CTTGCATATGTTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGTTATCTGA
1 CTTGCATATGTTTACTGATGGTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGTTATCTGA
* * *
32876924 ATAAGGGGCTAAGGCCCAGTTTATTGTAATTTGAAAAGGTCTCTGGCCTAGTACCACTGTTACCC
66 ATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCACTGTTACCC
32876989 AAATGGT
131 AAATGGT
32876996 CTTGCATATGTTTACTGATGGTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGTTATCTGA
1 CTTGCATATGTTTACTGATGGTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGTTATCTGA
32877061 ATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCACTGTTACC
66 ATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCACTGTTACC
32877125 TGAATGGGCT
Statistics
Matches: 124, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
137 124 1.00
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.33
Consensus pattern (137 bp):
CTTGCATATGTTTACTGATGGTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGTTATCTGA
ATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCACTGTTACCC
AAATGGT
Found at i:32896807 original size:27 final size:27
Alignment explanation
Indices: 32896776--32896953 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
32896766 TAAATTGTAC
32896776 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
32896803 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32896829 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
32896857 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
32896885 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32896912 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
32896939 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32896954 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:32896890 original size:82 final size:81
Alignment explanation
Indices: 32896777--32896932 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
32896767 AAATTGTACA
* *
32896777 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
32896841 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
32896858 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
32896923 TGCGAGTTGA
65 TGCGAATTGA
32896933 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Done.