Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold6438.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11731
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25


Found at i:11635 original size:132 final size:132

Alignment explanation


    Indices: 10421--11626  Score: 2169
    Period size: 132  Copynumber: 9.1  Consensus size: 132

      10411 TGAAGTCATT

                                                                             
      10421 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCTTATCTTCCTA
          1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCTTATCTTCCTA

                                                                             
      10486 TATTGGTAGGAAGTAGATCGACGACGCAGATCTTGTCTTCCCATATTGGTGGCGAAGCAGATCGA
         66 TATTGGTAGGAAGTAGATCGACGACGCAGATCTTGTCTTCCCATATTGGTGGCGAAGCAGATCGA

              
      10551 AG
        131 AG

                                                                             
      10553 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCTTATCTTCCTA
          1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCTTATCTTCCTA

                                                                             
      10618 TATTGGTAGGAAGTAGATCGACGACGCAGATCTTGTCTTCCCATATTGGTGGCGAAGCAGATCGA
         66 TATTGGTAGGAAGTAGATCGACGACGCAGATCTTGTCTTCCCATATTGGTGGCGAAGCAGATCGA

              
      10683 AG
        131 AG

                                                                             
      10685 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCTTATCTTCCTA
          1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCTTATCTTCCTA

                                                                             
      10750 TATTGGTAGGAAGTAGATCGACGACGCAGATCTTGTCTTCCCATATTGGTGGCGAAGCAGATCGA
         66 TATTGGTAGGAAGTAGATCGACGACGCAGATCTTGTCTTCCCATATTGGTGGCGAAGCAGATCGA

              
      10815 AG
        131 AG

                                                                             
      10817 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCTTATCTTCCTA
          1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCTTATCTTCCTA

                                                                             
      10882 TATTGGTAGGAAGTAGATCGACGACGCAGATCTTGTCTTCCCATATTGGTGGCGAAGCAGATCGA
         66 TATTGGTAGGAAGTAGATCGACGACGCAGATCTTGTCTTCCCATATTGGTGGCGAAGCAGATCGA

              
      10947 AG
        131 AG

                                                                             
      10949 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCTTATCTTCCTA
          1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCTTATCTTCCTA

                                                                             
      11014 TATTGGTAGGAAGTAGATCGACGACGCAGATCTTGTCTTCCCATATTGGTGGCGAAGCAGATCGA
         66 TATTGGTAGGAAGTAGATCGACGACGCAGATCTTGTCTTCCCATATTGGTGGCGAAGCAGATCGA

              
      11079 AG
        131 AG

                                                                             
      11081 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCTTATCTTCCTA
          1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCTTATCTTCCTA

                                                                             
      11146 TATTGGTAGGAAGTAGATCGACGACGCAGATCTTGTCTTCCCATATTGGTGGCGAAGCAGATCGA
         66 TATTGGTAGGAAGTAGATCGACGACGCAGATCTTGTCTTCCCATATTGGTGGCGAAGCAGATCGA

              
      11211 AG
        131 AG

                                                    *             ***        
      11213 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGGTAGCAGATCCGGTCTTCCTA
          1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCTTATCTTCCTA

                          *      *  *                                *    * *
      11278 TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATTGC
         66 TATTGGTAGGAAGTAGATCGACGACGCAGATCTTGTCTTCCCATATTGGTGGCGAAGCAGATCGA

              
      11343 AG
        131 AG

                                                    *             ***        
      11345 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGGTAGCAGATCCGGTCTTCCTA
          1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCTTATCTTCCTA

                          *      *  *                                        
      11410 TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGCAGATCGA
         66 TATTGGTAGGAAGTAGATCGACGACGCAGATCTTGTCTTCCCATATTGGTGGCGAAGCAGATCGA

              
      11475 AG
        131 AG

                                                        *  *      *          
      11477 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATATCAGATCCTATCTTCCTA
          1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCTTATCTTCCTA

                          *      *  * *    *                         *       
      11542 TATTGGTAGGAAGTGGATCGAAGATGTAGATATTGTCTTCCCATATTGGTGGCGAAGTAGATCGA
         66 TATTGGTAGGAAGTAGATCGACGACGCAGATCTTGTCTTCCCATATTGGTGGCGAAGCAGATCGA

              
      11607 AG
        131 AG

                     *        
      11609 AAAGCAGATATTGTCTTC
          1 AAAGCAGATCTTGTCTTC

      11627 CCATATTGGT


Statistics
Matches: 1052,  Mismatches: 22, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
 132  1052  1.00

ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29


Consensus pattern (132 bp):   
AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCTTATCTTCCTA
TATTGGTAGGAAGTAGATCGACGACGCAGATCTTGTCTTCCCATATTGGTGGCGAAGCAGATCGA
AG
Done.