Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold6577.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10997
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32


Found at i:535 original size:14 final size:14

Alignment explanation


    Indices: 518--566  Score: 55
    Period size: 14  Copynumber: 3.4  Consensus size: 14

        508 TTTTTTTCAC

                          
        518 TTTTTTTT-GAATT
          1 TTTTTTTTCGAATT

                        *    
        531 TTTTTTTCAATCAAATT
          1 TTTTTTT---TCGAATT

                          
        548 TTTTTTTTCGAATT
          1 TTTTTTTTCGAATT

                 
        562 TTTTT
          1 TTTTT

        567 AATTTTTTTT


Statistics
Matches: 30,  Mismatches: 2, Indels: 7
        0.77            0.05        0.18

Matches are distributed among these distances:
  13    7  0.23
  14   11  0.37
  16    1  0.03
  17   11  0.37

ACGTcount: A:0.18, C:0.06, G:0.04, T:0.71


Consensus pattern (14 bp):   
TTTTTTTTCGAATT
Done.