Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 37360634
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 908041 characters in sequence are not A, C, G, or T
File 3 of 115
Found at i:561043 original size:41 final size:41
Alignment explanation
Indices: 560994--561102 Score: 164
Period size: 41 Copynumber: 2.6 Consensus size: 41
560984 GACTTTAAGT
*
560994 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGCTATAAAC
**
561035 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGCTATAAGT
1 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGCTATAAAC
* *
561076 CTAGCAGGCTATGTGCCGTTGAATCTG
1 CTAGCAGGCTACGTGCCGGTG-ATCTG
561103 TTTTAATTAA
Statistics
Matches: 62, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
41 57 0.92
42 5 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGCTATAAAC
Found at i:566208 original size:21 final size:22
Alignment explanation
Indices: 566183--566226 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
566173 ACTTTAAAAT
* *
566183 TTTAGCTTTATTTATA-TATTA
1 TTTAGATTTATTTAAATTATTA
*
566204 TTTAGATTTTTTTAAATTATTA
1 TTTAGATTTATTTAAATTATTA
566226 T
1 T
566227 AATTTTTTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.64
Consensus pattern (22 bp):
TTTAGATTTATTTAAATTATTA
Found at i:566234 original size:18 final size:18
Alignment explanation
Indices: 566211--566273 Score: 60
Period size: 15 Copynumber: 3.6 Consensus size: 18
566201 TTATTTAGAT
566211 TTTTTTAAATTATTATAA
1 TTTTTTAAATTATTATAA
*
566229 TTTTTTAAA--A-TATAT
1 TTTTTTAAATTATTATAA
* *
566244 TTTTTTGAATTTTTATAAA
1 TTTTTTAAATTATTAT-AA
*
566263 TTTTTTGAATT
1 TTTTTTAAATT
566274 TTTGAAAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
15 12 0.32
16 1 0.03
18 12 0.32
19 12 0.32
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.63
Consensus pattern (18 bp):
TTTTTTAAATTATTATAA
Found at i:566257 original size:10 final size:10
Alignment explanation
Indices: 566242--566328 Score: 59
Period size: 10 Copynumber: 8.6 Consensus size: 10
566232 TTTAAAATAT
566242 ATTTTTTTGA
1 ATTTTTTTGA
*
566252 ATTTTTAT-A
1 ATTTTTTTGA
*
566261 AATTTTTTGA
1 ATTTTTTTGA
***
566271 ATTTTTGAAA
1 ATTTTTTTGA
*
566281 ATTATTTTGA
1 ATTTTTTTGA
***
566291 ATTTTTAAAA
1 ATTTTTTTGA
*
566301 ATTATTTTGA
1 ATTTTTTTGA
566311 ATTTGTTTTGTA
1 ATTT-TTTTG-A
566323 ATTTTT
1 ATTTTT
566329 GTTTAGAGAA
Statistics
Matches: 54, Mismatches: 20, Indels: 5
0.68 0.25 0.06
Matches are distributed among these distances:
9 7 0.13
10 35 0.65
11 7 0.13
12 5 0.09
ACGTcount: A:0.30, C:0.00, G:0.08, T:0.62
Consensus pattern (10 bp):
ATTTTTTTGA
Found at i:566267 original size:20 final size:19
Alignment explanation
Indices: 566200--566314 Score: 108
Period size: 19 Copynumber: 5.7 Consensus size: 19
566190 TTATTTATAT
* * *
566200 ATTATTTAGATTTTTTTAA
1 ATTATTTTGAATTTTTAAA
*
566219 ATTATTAT-AATTTTTTAAA
1 ATTATTTTGAA-TTTTTAAA
566238 ATATATTTTTTTGAATTTTTATAA
1 AT-TA---TTTTGAATTTTTA-AA
566262 ATT-TTTTGAATTTTTGAAA
1 ATTATTTTGAATTTTT-AAA
566281 ATTATTTTGAATTTTTAAAA
1 ATTATTTTGAATTTTT-AAA
566301 ATTATTTTGAATTT
1 ATTATTTTGAATTT
566315 GTTTTGTAAT
Statistics
Matches: 81, Mismatches: 6, Indels: 17
0.78 0.06 0.16
Matches are distributed among these distances:
18 1 0.01
19 32 0.40
20 32 0.40
23 10 0.12
24 6 0.07
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (19 bp):
ATTATTTTGAATTTTTAAA
Found at i:571683 original size:234 final size:234
Alignment explanation
Indices: 571268--571740 Score: 919
Period size: 234 Copynumber: 2.0 Consensus size: 234
571258 TAAATATAAT
*
571268 AATCCGTACATATGAACGCTTGAATGTTGTTTGCCTCTATCTTTCCCAGAATAACCCACTAAAGC
1 AATCCCTACATATGAACGCTTGAATGTTGTTTGCCTCTATCTTTCCCAGAATAACCCACTAAAGC
571333 TAACGAACGATTGTGAAATTCTTTCGACTTCTTTGATGGCGATGAGTATGACTTTCCTATAGGCA
66 TAACGAACGATTGTGAAATTCTTTCGACTTCTTTGATGGCGATGAGTATGACTTTCCTATAGGCA
571398 TTTTCCATAGTCACGAGCCTCAGAATCGGCTTTTCTCTTTATTTTGTTAAGTTCCTCAGCCTTGT
131 TTTTCCATAGTCACGAGCCTCAGAATCGGCTTTTCTCTTTATTTTGTTAAGTTCCTCAGCCTTGT
571463 GCGCTCTGTCCACCAACACTACAATTCTTTCAACTCAAG
196 GCGCTCTGTCCACCAACACTACAATTCTTTCAACTCAAG
571502 AATCCCTACATATGAACGCTTGAATGTTGTTTGCCTCTATCTTTCCCAGAATAACCCACTAAAGC
1 AATCCCTACATATGAACGCTTGAATGTTGTTTGCCTCTATCTTTCCCAGAATAACCCACTAAAGC
571567 TAACGAACGATTGTGAAATTCTTTCGACTTCTTTGATGGCGATGAGTATGACTTTCCTATAGGCA
66 TAACGAACGATTGTGAAATTCTTTCGACTTCTTTGATGGCGATGAGTATGACTTTCCTATAGGCA
571632 TTTTCCATAGTCACGAGCCTCAGAATCGGCTTTTCTCTTTATTTTGTTAAGTTCCTCAGCCTTGT
131 TTTTCCATAGTCACGAGCCTCAGAATCGGCTTTTCTCTTTATTTTGTTAAGTTCCTCAGCCTTGT
* *
571697 GCGCTCTGTCCACCAGCACTACAATTCTTTCAACTCGAG
196 GCGCTCTGTCCACCAACACTACAATTCTTTCAACTCAAG
571736 AATCC
1 AATCC
571741 AAACTAACAG
Statistics
Matches: 236, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
234 236 1.00
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (234 bp):
AATCCCTACATATGAACGCTTGAATGTTGTTTGCCTCTATCTTTCCCAGAATAACCCACTAAAGC
TAACGAACGATTGTGAAATTCTTTCGACTTCTTTGATGGCGATGAGTATGACTTTCCTATAGGCA
TTTTCCATAGTCACGAGCCTCAGAATCGGCTTTTCTCTTTATTTTGTTAAGTTCCTCAGCCTTGT
GCGCTCTGTCCACCAACACTACAATTCTTTCAACTCAAG
Found at i:578523 original size:10 final size:10
Alignment explanation
Indices: 578508--578532 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
578498 AAATAATAAT
578508 TAAAATCTTA
1 TAAAATCTTA
578518 TAAAATCTTA
1 TAAAATCTTA
578528 TAAAA
1 TAAAA
578533 GTTTTAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (10 bp):
TAAAATCTTA
Found at i:585056 original size:24 final size:24
Alignment explanation
Indices: 585035--585083 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
585025 TTGATTTTGT
*
585035 TCATGTATATAGTTTAATTTTTTA
1 TCATGTATATAGTTAAATTTTTTA
585059 TCATGTATATAGTTAAATTTTTTA
1 TCATGTATATAGTTAAATTTTTTA
585083 T
1 T
585084 ATTGTTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.31, C:0.04, G:0.08, T:0.57
Consensus pattern (24 bp):
TCATGTATATAGTTAAATTTTTTA
Found at i:585851 original size:18 final size:18
Alignment explanation
Indices: 585828--585875 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
585818 AAAATATGAG
*
585828 AAATGATGTTCTCATTTC
1 AAATGATGTTCACATTTC
585846 AAATGATGTTCACATTTC
1 AAATGATGTTCACATTTC
585864 AAATGATGTTCA
1 AAATGATGTTCA
585876 AATTGATGGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.40
Consensus pattern (18 bp):
AAATGATGTTCACATTTC
Found at i:586433 original size:75 final size:73
Alignment explanation
Indices: 586309--586483 Score: 228
Period size: 75 Copynumber: 2.4 Consensus size: 73
586299 GGCTTAAGCG
* * * * *
586309 AATTATGTTTTTATCAATAGTTATTTATGTTTAGTTTTTGGATATTGAATTTATGTTCTACTTAT
1 AATTATG-TTTTATTAATAGTTGTTTATGTTTAGTCTTTAGATATTGAATTTATGTTCCACTTAT
*
586374 TTATGTGTA-TC
65 TT-T-T-TATTA
*
586385 AATTATGTTTTATTAATAGTTGTTTATGTTTGGTCTTTAGATATTGAATTTATGTTCCACTTATT
1 AATTATGTTTTATTAATAGTTGTTTATGTTTAGTCTTTAGATATTGAATTTATGTTCCACTTATT
586450 TTTTATTA
66 TTTTATTA
*
586458 AATTA-GTTTTATTAATGGTTGTTTAT
1 AATTATGTTTTATTAATAGTTGTTTAT
586484 ATGTGATTTT
Statistics
Matches: 90, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
72 22 0.24
73 7 0.08
74 1 0.01
75 53 0.59
76 7 0.08
ACGTcount: A:0.25, C:0.05, G:0.13, T:0.57
Consensus pattern (73 bp):
AATTATGTTTTATTAATAGTTGTTTATGTTTAGTCTTTAGATATTGAATTTATGTTCCACTTATT
TTTTATTA
Found at i:588271 original size:21 final size:22
Alignment explanation
Indices: 588245--588299 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 22
588235 ATCTAATTAC
588245 AAATATTTAATTATTATA-TTT
1 AAATATTTAATTATTATAGTTT
588266 AAATATTTAA--A-TATAGTTT
1 AAATATTTAATTATTATAGTTT
*
588285 ATATATTCTAATTAT
1 AAATATT-TAATTAT
588300 ATTTAATAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
18 4 0.14
19 10 0.36
20 3 0.11
21 10 0.36
22 1 0.04
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (22 bp):
AAATATTTAATTATTATAGTTT
Found at i:588290 original size:19 final size:19
Alignment explanation
Indices: 588259--588305 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
588249 ATTTAATTAT
588259 TATATTTAAATATT-TAAA
1 TATATTTAAATATTCTAAA
* *
588277 TATAGTTTATATATTCTAAT
1 TATA-TTTAAATATTCTAAA
588297 TATATTTAA
1 TATATTTAA
588306 TAAATAATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
18 4 0.17
19 13 0.54
20 7 0.29
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (19 bp):
TATATTTAAATATTCTAAA
Found at i:588364 original size:24 final size:27
Alignment explanation
Indices: 588317--588366 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
588307 AAATAATTAA
588317 TATTAATTACTTAGAAATATTTAAAAT
1 TATTAATTACTTAGAAATATTTAAAAT
*
588344 TATTATTTA-TTA-AAATA-TTAAAA
1 TATTAATTACTTAGAAATATTTAAAA
588367 GTAAGTTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 6 0.27
25 5 0.23
26 3 0.14
27 8 0.36
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (27 bp):
TATTAATTACTTAGAAATATTTAAAAT
Found at i:590945 original size:37 final size:37
Alignment explanation
Indices: 590888--591038 Score: 171
Period size: 37 Copynumber: 3.9 Consensus size: 37
590878 TATGATCACT
*
590888 TATCAC-TTGTC-CCTGATCAGATAAGTGTAGCCACC
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
* *
590923 TATCACTTTGTTTCTTGATCAGATAAGTGTAGCCACT
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
*
590960 TATCACTTTGTCTCTTGATCATATAAGTGTAGCTAAAGCTATCAC
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGC-----C-A-C-C
591005 TTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 -TATCACTTTGTCTCTTGATCAGATAAGTGTAGC
591039 TAAAGCTATC
Statistics
Matches: 98, Mismatches: 7, Indels: 11
0.84 0.06 0.09
Matches are distributed among these distances:
35 6 0.06
36 4 0.04
37 53 0.54
42 1 0.01
43 1 0.01
44 1 0.01
46 32 0.33
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (37 bp):
TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
Found at i:591023 original size:46 final size:46
Alignment explanation
Indices: 590956--591431 Score: 434
Period size: 46 Copynumber: 9.6 Consensus size: 46
590946 TAAGTGTAGC
* * *
590956 CACTTATCACTTTGTCTCTTGATCATATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
* *
591002 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
* *
591048 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
* * * *
591094 TACTTATCACTTTCCACTTTTGTC-CCTGATCAGATAAGTGTAGCT-AGGCTAC
1 CAC-T-T-A---T-CAC-TTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
* *
591146 CACTTATCACTTTGTCACTTAATCAGGTAAGTGTAGCTAAAGTGTAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATC-----A--G-A--T-AAGTGTAGCTGAAGCTAT
*
591203 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC-TTT-----GTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
591255 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
* *
591307 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
* * *
591353 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
591405 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
591432 AGTACTCAAA
Statistics
Matches: 365, Mismatches: 27, Indels: 76
0.78 0.06 0.16
Matches are distributed among these distances:
44 6 0.02
45 8 0.02
46 148 0.41
47 1 0.00
48 2 0.01
49 2 0.01
50 4 0.01
51 1 0.00
52 119 0.33
53 25 0.07
54 6 0.02
55 2 0.01
56 10 0.03
57 17 0.05
58 4 0.01
63 10 0.03
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
Found at i:591177 original size:98 final size:99
Alignment explanation
Indices: 590999--591318 Score: 297
Period size: 109 Copynumber: 3.1 Consensus size: 99
590989 TAGCTAAAGC
* *
590999 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTC
1 TATCACTTATCACTTTGTCTCCTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTC
*
591064 ACTTGATCAGATAAGTATAGCCGAAGCTATTACT
66 ACTTAATCAGATAAGTATAGCCGAAGCTATTACT
*
591098 TATCACTT-TCCACTTTTGTC-CCTGATCAGATAAGTGTAGCT-AGGCTACCACTTATCACTTTG
1 TATCACTTAT-CAC-TTTGTCTCCTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTG
* *
591160 TCACTTAATCAGGTAAGTGTAGCTAAAGTGTAGCCGAAGCTATCACT
64 TCACTTAATC-----A--G-A--T-AAGTATAGCCGAAGCTATTACT
* * * ** *
591207 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCCA
1 TATCACTTATCACTTTGTCTCCTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC--T---
* * * *
591271 CTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACT
61 -TTGTCACTTAATCAGATAAGTATAGCCGAAGCTATTACT
591311 TATCACTT
1 TATCACTT
591319 TGTCACTTGA
Statistics
Matches: 187, Mismatches: 12, Indels: 39
0.79 0.05 0.16
Matches are distributed among these distances:
98 29 0.16
99 31 0.17
100 6 0.03
103 1 0.01
104 29 0.16
105 2 0.01
106 1 0.01
107 6 0.03
108 21 0.11
109 46 0.25
110 2 0.01
111 1 0.01
115 12 0.06
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (99 bp):
TATCACTTATCACTTTGTCTCCTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTC
ACTTAATCAGATAAGTATAGCCGAAGCTATTACT
Found at i:591360 original size:98 final size:98
Alignment explanation
Indices: 590967--591431 Score: 478
Period size: 98 Copynumber: 4.6 Consensus size: 98
590957 ACTTATCACT
* * * *
590967 TTGTCTCTTGATCATATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCTTGATCAGATAA
1 TTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTATCACTTTGTCACTTGATCAGATAA
**
591032 GTGTAGCTAAAGCTATCACTTATCAC--T----
66 GTGTAGCCGAAGCTATCACTTATCACTTTCCAC
* * * *
591059 TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTTTTGTC-CCTGA
1 TTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCAC-T-T-A---T-CAC-TTTGTCACTTGA
* * * *
591123 TCAGATAAGTGTAG-CTAGGCTACCACTTATCACTTTGTCAC
58 TCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTT-CCAC
* ** * * * *
591164 TTAATCAGGTAAGTGTAGCTAAAGTGTAGCCGAAGCTATCACTTATCACTTTTCACTTGTCACTT
1 TT-GTCACTTGA-T-CAGAT-AAGTGTAGCTGAAGCTATCACTTATCAC---T---TTGTCACTT
591229 GATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCCAC
56 GATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCCAC
591272 TTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTATCACTTTGTCACTTGATCAGATAA
1 TTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTATCACTTTGTCACTTGATCAGATAA
* *
591337 GTATAGCCGAAGCTATTACTTATCACTTTCCAC
66 GTGTAGCCGAAGCTATCACTTATCACTTTCCAC
* *
591370 TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGA
1 TTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTATCACTTTGTCACTTGATCAGA
591432 AGTACTCAAA
Statistics
Matches: 312, Mismatches: 35, Indels: 46
0.79 0.09 0.12
Matches are distributed among these distances:
92 32 0.10
93 1 0.00
94 1 0.00
95 1 0.00
98 126 0.40
99 21 0.07
100 7 0.02
101 1 0.00
102 3 0.01
103 1 0.00
104 29 0.09
105 5 0.02
106 7 0.02
107 12 0.04
108 27 0.09
109 38 0.12
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (98 bp):
TTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTATCACTTTGTCACTTGATCAGATAA
GTGTAGCCGAAGCTATCACTTATCACTTTCCAC
Found at i:594356 original size:22 final size:23
Alignment explanation
Indices: 594314--594363 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
594304 CTCTCTCCAT
* * *
594314 GGTTAGGGCTTTTTATTTTTTAG
1 GGTTAGGGCTTATAATTTTTTAA
594337 GGTTAGGG-TTATAATTTTTTAA
1 GGTTAGGGCTTATAATTTTTTAA
594359 GGTTA
1 GGTTA
594364 AGTTTAGGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
22 16 0.67
23 8 0.33
ACGTcount: A:0.20, C:0.02, G:0.26, T:0.52
Consensus pattern (23 bp):
GGTTAGGGCTTATAATTTTTTAA
Found at i:596963 original size:28 final size:27
Alignment explanation
Indices: 596900--597051 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
596890 ATATTAAGTC
* *
596900 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
596927 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
596955 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
596982 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
597010 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
597037 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
597052 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:596984 original size:55 final size:55
Alignment explanation
Indices: 596900--597076 Score: 264
Period size: 55 Copynumber: 3.2 Consensus size: 55
596890 ATATTAAGTC
* * *
596900 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
596955 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * *
597010 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAA-TCAAACT
597066 CGCACACTTAG
1 CGCACACTTAG
597077 CGCCAATCTC
Statistics
Matches: 111, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
55 95 0.86
56 16 0.14
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:601554 original size:40 final size:40
Alignment explanation
Indices: 601456--601718 Score: 309
Period size: 40 Copynumber: 6.6 Consensus size: 40
601446 TCCTCGTTCA
* * * ** *
601456 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
601495 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
601535 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
601575 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
601615 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
601655 AAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACG
* *
601695 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
601719 CAGCATTCAA
Statistics
Matches: 199, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 37 0.19
40 154 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:610322 original size:39 final size:40
Alignment explanation
Indices: 610279--610501 Score: 254
Period size: 40 Copynumber: 5.6 Consensus size: 40
610269 TCCTCGTTCA
* * * * *
610279 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
610318 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
610358 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
610398 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
610438 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
610478 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
610502 CAGCATTCAA
Statistics
Matches: 162, Mismatches: 18, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
39 37 0.23
40 117 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:610510 original size:41 final size:41
Alignment explanation
Indices: 610433--610510 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
610423 TTAGTATCTC
* * *
610433 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
610474 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
610511 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:612362 original size:28 final size:28
Alignment explanation
Indices: 612330--612387 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 28
612320 TGTGTTGGAA
* * * *
612330 GATAGTGGGCAACGGTGCATTTTACGAT
1 GATAGCGGGCAACCGTACATTCTACGAT
612358 GATAGCGGGCAACCGTACATTCTACGAT
1 GATAGCGGGCAACCGTACATTCTACGAT
612386 GA
1 GA
612388 CATGATGCAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (28 bp):
GATAGCGGGCAACCGTACATTCTACGAT
Found at i:612981 original size:31 final size:30
Alignment explanation
Indices: 612943--613002 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 30
612933 GGCCCATTTT
612943 TATTTTAAAAAT-TTTAAAAAATTGAAAAAAG
1 TATTTTAAAAATATTT-AAAAATT-AAAAAAG
*
612974 TATTTTAAAAATATTTTAAAATTAAAAAA
1 TATTTTAAAAATATTTAAAAATTAAAAAA
613003 TTTAAAAAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 6 0.22
31 18 0.67
32 3 0.11
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.38
Consensus pattern (30 bp):
TATTTTAAAAATATTTAAAAATTAAAAAAG
Found at i:612983 original size:11 final size:11
Alignment explanation
Indices: 612943--613064 Score: 86
Period size: 10 Copynumber: 11.9 Consensus size: 11
612933 GGCCCATTTT
612943 TATTTT-AAAA
1 TATTTTAAAAA
612953 -ATTTTAAAAA
1 TATTTTAAAAA
**
612963 -ATTGAAAAAA
1 TATTTTAAAAA
612973 GTATTTTAAAAA
1 -TATTTTAAAAA
612985 TATTTT--AAA
1 TATTTTAAAAA
612994 -A--TTAAAAA
1 TATTTTAAAAA
*
613002 -ATTTAAAAAA
1 TATTTTAAAAA
613012 GTATTTTAAAAA
1 -TATTTTAAAAA
613024 TATTTT-AAAA
1 TATTTTAAAAA
***
613034 T-TACAAAAAA
1 TATTTTAAAAA
*
613044 TATTTAAAAAA
1 TATTTTAAAAA
613055 TATTTTAAAA
1 TATTTTAAAA
613065 TTAAAAAAAT
Statistics
Matches: 89, Mismatches: 12, Indels: 21
0.73 0.10 0.17
Matches are distributed among these distances:
6 2 0.02
8 5 0.06
9 9 0.10
10 28 0.31
11 28 0.31
12 17 0.19
ACGTcount: A:0.58, C:0.01, G:0.02, T:0.39
Consensus pattern (11 bp):
TATTTTAAAAA
Found at i:613004 original size:39 final size:37
Alignment explanation
Indices: 612956--613124 Score: 181
Period size: 39 Copynumber: 4.6 Consensus size: 37
612946 TTTAAAAATT
*
612956 TTAAAAAATTGAAAAAAGTATTTTAAAAATATTTTAAAA
1 TTAAAAAATT-AAAAAA-TATTTAAAAAATATTTTAAAA
*
612995 TTAAAAAATTTAAAAAAGTATTTTAAAAATATTTTAAAA
1 TTAAAAAA-TTAAAAAA-TATTTAAAAAATATTTTAAAA
*
613034 TT-----A-CAAAAAATATTTAAAAAATATTTTAAAA
1 TTAAAAAATTAAAAAATATTTAAAAAATATTTTAAAA
*
613065 TTAAAAAAATTAAAAAATCATGTAAAAAATATTTTAAAA
1 TT-AAAAAATTAAAAAAT-ATTTAAAAAATATTTTAAAA
* *
613104 TTAAAAAAAT-AAATATATTTA
1 TTAAAAAATTAAAAAATATTTA
613125 TTATATCGGG
Statistics
Matches: 114, Mismatches: 7, Indels: 21
0.80 0.05 0.15
Matches are distributed among these distances:
31 22 0.19
32 6 0.05
34 1 0.01
36 4 0.04
37 6 0.05
38 14 0.12
39 59 0.52
40 2 0.02
ACGTcount: A:0.61, C:0.01, G:0.02, T:0.36
Consensus pattern (37 bp):
TTAAAAAATTAAAAAATATTTAAAAAATATTTTAAAA
Found at i:613018 original size:70 final size:70
Alignment explanation
Indices: 612943--613114 Score: 226
Period size: 70 Copynumber: 2.5 Consensus size: 70
612933 GGCCCATTTT
* * *
612943 TATTTTAAAAAT-TTTAAAAAATTGA-AAAAAGTATTTTAAAAATATTTTAAAATTAAAAAATTT
1 TATTTTAAAAATATTT-AAAAATT-ACAAAAAATATTTAAAAAATATTTTAAAATTAAAAAAATT
613006 AAAAAAG
64 AAAAAAG
*
613013 TATTTTAAAAATATTTTAAAATTACAAAAAATATTTAAAAAATATTTTAAAATTAAAAAAATTAA
1 TATTTTAAAAATATTTAAAAATTACAAAAAATATTTAAAAAATATTTTAAAATTAAAAAAATTAA
613078 AAAA-
66 AAAAG
* * *
613082 TCATGTAAAAAATATTTTAAAATTA-AAAAAATA
1 T-ATTTTAAAAATATTTAAAAATTACAAAAAATA
613115 AATATATTTA
Statistics
Matches: 93, Mismatches: 6, Indels: 7
0.88 0.06 0.07
Matches are distributed among these distances:
69 10 0.11
70 80 0.86
71 3 0.03
ACGTcount: A:0.60, C:0.01, G:0.02, T:0.36
Consensus pattern (70 bp):
TATTTTAAAAATATTTAAAAATTACAAAAAATATTTAAAAAATATTTTAAAATTAAAAAAATTAA
AAAAG
Found at i:613042 original size:31 final size:30
Alignment explanation
Indices: 612999--613074 Score: 116
Period size: 31 Copynumber: 2.5 Consensus size: 30
612989 TTAAAATTAA
* *
612999 AAAATTTAAAAAAGTATTTTAAAAATATTTT
1 AAAA-TTAAAAAAATATTTAAAAAATATTTT
613030 AAAATTACAAAAAATATTTAAAAAATATTTT
1 AAAATTA-AAAAAATATTTAAAAAATATTTT
613061 AAAATTAAAAAAAT
1 AAAATTAAAAAAAT
613075 TAAAAAATCA
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
30 10 0.24
31 32 0.76
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.36
Consensus pattern (30 bp):
AAAATTAAAAAAATATTTAAAAAATATTTT
Found at i:613114 original size:19 final size:18
Alignment explanation
Indices: 612980--613111 Score: 73
Period size: 18 Copynumber: 7.3 Consensus size: 18
612970 AAAGTATTTT
612980 AAAAATATTTTAAAATTA
1 AAAAATATTTTAAAATTA
** *
612998 AAAAAT-TTAAAAAAGTATTTT
1 AAAAATATT-TTAAA--A-TTA
613019 AAAAATATTTTAAAATTA
1 AAAAATATTTTAAAATTA
*
613037 CAAAAA-A---T--ATTTA
1 -AAAAATATTTTAAAATTA
613050 AAAAATATTTTAAAATTA
1 AAAAATATTTTAAAATTA
**
613068 AAAAA-ATTAAAAAATCATGTA
1 AAAAATATT-TTAAA--AT-TA
613089 AAAAATATTTTAAAATTA
1 AAAAATATTTTAAAATTA
613107 AAAAA
1 AAAAA
613112 ATAAATATAT
Statistics
Matches: 85, Mismatches: 12, Indels: 34
0.65 0.09 0.26
Matches are distributed among these distances:
12 5 0.06
13 5 0.06
15 1 0.01
16 1 0.01
17 5 0.06
18 31 0.36
19 8 0.09
20 3 0.04
21 21 0.25
22 5 0.06
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.34
Consensus pattern (18 bp):
AAAAATATTTTAAAATTA
Found at i:613146 original size:10 final size:11
Alignment explanation
Indices: 613130--613158 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
613120 ATTTATTATA
613130 TCGGGCCGGGC
1 TCGGGCCGGGC
613141 -CGGGCCGGGC
1 TCGGGCCGGGC
613151 TCGGGCCG
1 TCGGGCCG
613159 AAAAAGTGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.00, C:0.38, G:0.55, T:0.07
Consensus pattern (11 bp):
TCGGGCCGGGC
Found at i:615428 original size:26 final size:26
Alignment explanation
Indices: 615392--615477 Score: 111
Period size: 26 Copynumber: 3.3 Consensus size: 26
615382 TCCATGGGCC
615392 GTAAAATTATCGAAATACCCCAAAGG
1 GTAAAATTATCGAAATACCCCAAAGG
*
615418 GTAAAATTATCGAAATACTCCAAAGG
1 GTAAAATTATCGAAATACCCCAAAGG
* * *
615444 ATAAAATTA-CTGAAATACCTCTATAGG
1 GTAAAATTATC-GAAATACC-CCAAAGG
615471 GTAAAAT
1 GTAAAAT
615478 GACTGTTATA
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
25 1 0.02
26 40 0.77
27 11 0.21
ACGTcount: A:0.47, C:0.15, G:0.14, T:0.24
Consensus pattern (26 bp):
GTAAAATTATCGAAATACCCCAAAGG
Found at i:624593 original size:20 final size:20
Alignment explanation
Indices: 624568--624659 Score: 58
Period size: 20 Copynumber: 4.6 Consensus size: 20
624558 CACATACGTG
*
624568 CCCCTGTTTGTACTTCGGTA
1 CCCCTGTTTGTACTTAGGTA
* * * * *
624588 CCCCTGATTGCACATATGTG
1 CCCCTGTTTGTACTTAGGTA
* *
624608 CCCCTATTTGTACTTTGGTA
1 CCCCTGTTTGTACTTAGGTA
* * * * * *
624628 CCCTTGATTGCACATATGTG
1 CCCCTGTTTGTACTTAGGTA
624648 CCCCTGTTTGTA
1 CCCCTGTTTGTA
624660 TTCCAGTACC
Statistics
Matches: 48, Mismatches: 24, Indels: 0
0.67 0.33 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.15, C:0.28, G:0.18, T:0.38
Consensus pattern (20 bp):
CCCCTGTTTGTACTTAGGTA
Found at i:624609 original size:40 final size:40
Alignment explanation
Indices: 624552--624861 Score: 379
Period size: 40 Copynumber: 7.8 Consensus size: 40
624542 AACTATTGTA
*
624552 TGATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
1 TGATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCT
* * *
624592 TGATTGCACATATGTGCCCCTATTTGTACTTTGGTACCCT
1 TGATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCT
* *
624632 TGATTGCACATATGTGCCCCTGTTTGTA-TTCCAGTACCCT
1 TGATTGCACATACGTGCCCCTGTTTGTACTT-CGGTACCCT
* * * * *
624672 TGATTGCACATACGTGCCCTTTTTTGTACTTTGATAACCT
1 TGATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCT
* * *
624712 TGATTGCACATATGTGCCCCTGTTTGTACTTTGATACCCT
1 TGATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCT
* ** * *
624752 TGATTGTACATATATGCCCCTGTTTGTACTTCAGTACCCC
1 TGATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCT
* * * **
624792 TGATTGCACATACCTGCCCTTGTTTGTATTTCAATACCCT
1 TGATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCT
*
624832 TGATTGCACATACATGCCCCTGTTTGTACT
1 TGATTGCACATACGTGCCCCTGTTTGTACT
624862 CTAGTAACCC
Statistics
Matches: 234, Mismatches: 34, Indels: 4
0.86 0.12 0.01
Matches are distributed among these distances:
39 2 0.01
40 230 0.98
41 2 0.01
ACGTcount: A:0.18, C:0.27, G:0.16, T:0.38
Consensus pattern (40 bp):
TGATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCT
Found at i:624760 original size:20 final size:20
Alignment explanation
Indices: 624695--624760 Score: 62
Period size: 20 Copynumber: 3.3 Consensus size: 20
624685 GTGCCCTTTT
*
624695 TTGTACTTTGATAACCTTGA
1 TTGTACTTTGATACCCTTGA
* * * * *
624715 TTGCACATATG-TGCCCCTGT
1 TTGTAC-TTTGATACCCTTGA
624735 TTGTACTTTGATACCCTTGA
1 TTGTACTTTGATACCCTTGA
624755 TTGTAC
1 TTGTAC
624761 ATATATGCCC
Statistics
Matches: 33, Mismatches: 11, Indels: 4
0.69 0.23 0.08
Matches are distributed among these distances:
19 3 0.09
20 27 0.82
21 3 0.09
ACGTcount: A:0.20, C:0.21, G:0.17, T:0.42
Consensus pattern (20 bp):
TTGTACTTTGATACCCTTGA
Found at i:624770 original size:120 final size:120
Alignment explanation
Indices: 624552--624861 Score: 453
Period size: 120 Copynumber: 2.6 Consensus size: 120
624542 AACTATTGTA
* * * * *
624552 TGATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTGATTGCACATATGTGCCCCTATTT
1 TGATTGCACATACGTGCCCTTGTTTGTACTTTGATACCCTTGATTGCACATATGTGCCCCTGTTT
* * *
624617 GTACTTTGGTACCCTTGATTGCACATATGTGCCCCTGTTTGTA-TTCCAGTACCCT
66 GTACTTTGATACCCTTGATTGCACATATATGCCCCTGTTTGTACTT-CAGTACCCC
* *
624672 TGATTGCACATACGTGCCCTTTTTTGTACTTTGATAACCTTGATTGCACATATGTGCCCCTGTTT
1 TGATTGCACATACGTGCCCTTGTTTGTACTTTGATACCCTTGATTGCACATATGTGCCCCTGTTT
*
624737 GTACTTTGATACCCTTGATTGTACATATATGCCCCTGTTTGTACTTCAGTACCCC
66 GTACTTTGATACCCTTGATTGCACATATATGCCCCTGTTTGTACTTCAGTACCCC
* * **
624792 TGATTGCACATACCTGCCCTTGTTTGTA-TTTCAATACCCTTGATTGCACATACATGCCCCTGTT
1 TGATTGCACATACGTGCCCTTGTTTGTACTTT-GATACCCTTGATTGCACATATGTGCCCCTGTT
624856 TGTACT
65 TGTACT
624862 CTAGTAACCC
Statistics
Matches: 171, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
119 3 0.02
120 166 0.97
121 2 0.01
ACGTcount: A:0.18, C:0.27, G:0.16, T:0.38
Consensus pattern (120 bp):
TGATTGCACATACGTGCCCTTGTTTGTACTTTGATACCCTTGATTGCACATATGTGCCCCTGTTT
GTACTTTGATACCCTTGATTGCACATATATGCCCCTGTTTGTACTTCAGTACCCC
Found at i:624778 original size:20 final size:20
Alignment explanation
Indices: 624719--624780 Score: 63
Period size: 20 Copynumber: 3.1 Consensus size: 20
624709 CCTTGATTGC
*
624719 ACATATGTGCCCCTGTTTGT
1 ACATATATGCCCCTGTTTGT
* * * *
624739 AC-TTTGATACCCTTGATTGT
1 ACATAT-ATGCCCCTGTTTGT
624759 ACATATATGCCCCTGTTTGT
1 ACATATATGCCCCTGTTTGT
624779 AC
1 AC
624781 TTCAGTACCC
Statistics
Matches: 31, Mismatches: 9, Indels: 4
0.70 0.20 0.09
Matches are distributed among these distances:
19 2 0.06
20 27 0.87
21 2 0.06
ACGTcount: A:0.19, C:0.24, G:0.16, T:0.40
Consensus pattern (20 bp):
ACATATATGCCCCTGTTTGT
Found at i:627390 original size:28 final size:28
Alignment explanation
Indices: 627350--627437 Score: 151
Period size: 28 Copynumber: 3.2 Consensus size: 28
627340 AGAGGTGAGA
627350 GATTTTTACACGAGGATTTTGGAGGAGG
1 GATTTTTACACGAGGATTTTGGAGGAGG
*
627378 GATTGTTACACGAGGATTTTGGAGGAGG
1 GATTTTTACACGAGGATTTTGGAGGAGG
*
627406 GATTTTTACAAGAGGATTTTGGAGG-GG
1 GATTTTTACACGAGGATTTTGGAGGAGG
627433 GATTT
1 GATTT
627438 GGGGAGAGCA
Statistics
Matches: 57, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 7 0.12
28 50 0.88
ACGTcount: A:0.25, C:0.06, G:0.36, T:0.33
Consensus pattern (28 bp):
GATTTTTACACGAGGATTTTGGAGGAGG
Found at i:633598 original size:26 final size:26
Alignment explanation
Indices: 633531--633598 Score: 91
Period size: 26 Copynumber: 2.6 Consensus size: 26
633521 TCTGACCTAC
* **
633531 AGCTCGTGTGAGTAGGCCCATTTCAT
1 AGCTCGTGTGAGCATACCCATTTCAT
* *
633557 AGCTCGTGTGAACATACTCATTTCAT
1 AGCTCGTGTGAGCATACCCATTTCAT
633583 AGCTCGTGTGAGCATA
1 AGCTCGTGTGAGCATA
633599 TATGTATAGG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.31
Consensus pattern (26 bp):
AGCTCGTGTGAGCATACCCATTTCAT
Found at i:661155 original size:35 final size:35
Alignment explanation
Indices: 661114--661185 Score: 117
Period size: 35 Copynumber: 2.1 Consensus size: 35
661104 TTAATTGATC
*
661114 AGCTTTGACAATTGGAGTTCTCGAACAGTCATTGA
1 AGCTTTGACAATTGAAGTTCTCGAACAGTCATTGA
* *
661149 AGCTTTGACAATTGAAGTTCTTGAATAGTCATTGA
1 AGCTTTGACAATTGAAGTTCTCGAACAGTCATTGA
661184 AG
1 AG
661186 TGGAATTAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33
Consensus pattern (35 bp):
AGCTTTGACAATTGAAGTTCTCGAACAGTCATTGA
Found at i:664697 original size:42 final size:42
Alignment explanation
Indices: 664650--664733 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
664640 AACTAATTAA
664650 ACCTTAAGCATGATTAACTAAAGTTAGTGGATTTTATCATCC
1 ACCTTAAGCATGATTAACTAAAGTTAGTGGATTTTATCATCC
664692 ACCTTAAGCATGATTAACTAAAGTTAGTGGATTTTATCATCC
1 ACCTTAAGCATGATTAACTAAAGTTAGTGGATTTTATCATCC
664734 GCCGCCATCT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (42 bp):
ACCTTAAGCATGATTAACTAAAGTTAGTGGATTTTATCATCC
Found at i:665335 original size:15 final size:16
Alignment explanation
Indices: 665307--665336 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
665297 TATTTTGGTT
665307 TAAATATAATTTTTTA
1 TAAATATAATTTTTTA
665323 TAAATAT-ATTTTTT
1 TAAATATAATTTTTT
665337 CTACATTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
TAAATATAATTTTTTA
Found at i:665796 original size:31 final size:31
Alignment explanation
Indices: 665719--665780 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
665709 TGACATAACC
665719 AACATGAATGAAAGAGAACAAAAAATGTTTT
1 AACATGAATGAAAGAGAACAAAAAATGTTTT
665750 AACATGAATGAAAGAGAACAAAAAATGTTTT
1 AACATGAATGAAAGAGAACAAAAAATGTTTT
665781 TGATGAATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.55, C:0.06, G:0.16, T:0.23
Consensus pattern (31 bp):
AACATGAATGAAAGAGAACAAAAAATGTTTT
Found at i:670778 original size:29 final size:29
Alignment explanation
Indices: 670727--670783 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 29
670717 ATAAAATGTT
** *
670727 TAATATAATACATTTACTTTCAAAATATC
1 TAATATAATACATGAACTATCAAAATATC
* *
670756 TAATATAATATATGAACTATCAATATAT
1 TAATATAATACATGAACTATCAAAATAT
670784 ACTTTATTAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.47, C:0.11, G:0.02, T:0.40
Consensus pattern (29 bp):
TAATATAATACATGAACTATCAAAATATC
Found at i:671929 original size:14 final size:13
Alignment explanation
Indices: 671909--671957 Score: 62
Period size: 14 Copynumber: 3.5 Consensus size: 13
671899 AAGAATTCTC
671909 AATTTATTAAAAT
1 AATTTATTAAAAT
671922 ATATTTATTAAAAT
1 A-ATTTATTAAAAT
671936 AATTTATGTAATAAT
1 AATTTAT-TAA-AAT
671951 AAATTTA
1 -AATTTA
671958 AAAAAATCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
13 7 0.22
14 16 0.50
15 3 0.09
16 6 0.19
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (13 bp):
AATTTATTAAAAT
Found at i:671961 original size:27 final size:26
Alignment explanation
Indices: 671909--671962 Score: 63
Period size: 29 Copynumber: 2.0 Consensus size: 26
671899 AAGAATTCTC
*
671909 AATTTATTAAAATATATTTATTAAAAT
1 AATTTATTAAAATAAATTTA-TAAAAT
*
671936 AATTTATGTAATAATAAATTTAAAAAA
1 AATTTAT-TAA-AATAAATTTATAAAA
671963 ATCAAATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 7 0.30
28 7 0.30
29 9 0.39
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.43
Consensus pattern (26 bp):
AATTTATTAAAATAAATTTATAAAAT
Found at i:691514 original size:50 final size:50
Alignment explanation
Indices: 691443--691548 Score: 203
Period size: 50 Copynumber: 2.1 Consensus size: 50
691433 CCTAAATCTC
*
691443 TTCTTTGTGCCGTCAACCTCAAATCCCAAAAGAAACCCCAGTCATTTTCT
1 TTCTTTGTGCCGTCAACCTCAAATCCCAAAAGAAACCCCAATCATTTTCT
691493 TTCTTTGTGCCGTCAACCTCAAATCCCAAAAGAAACCCCAATCATTTTCT
1 TTCTTTGTGCCGTCAACCTCAAATCCCAAAAGAAACCCCAATCATTTTCT
691543 TTCTTT
1 TTCTTT
691549 TTGTCGAAAT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 55 1.00
ACGTcount: A:0.27, C:0.31, G:0.08, T:0.33
Consensus pattern (50 bp):
TTCTTTGTGCCGTCAACCTCAAATCCCAAAAGAAACCCCAATCATTTTCT
Found at i:698666 original size:19 final size:19
Alignment explanation
Indices: 698642--698679 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
698632 ATGATTATAA
698642 TGGCATGTATAGGAAACTT
1 TGGCATGTATAGGAAACTT
698661 TGGCATGTATAGGAAACTT
1 TGGCATGTATAGGAAACTT
698680 ATGTTTAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.32
Consensus pattern (19 bp):
TGGCATGTATAGGAAACTT
Found at i:699672 original size:49 final size:49
Alignment explanation
Indices: 699600--700062 Score: 757
Period size: 47 Copynumber: 9.7 Consensus size: 49
699590 TAACCATTCC
*
699600 TTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT
*
699649 TTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT
699698 TTCACATTCATCACATCGGCCATTAGGCCTTATCACAT-T-TATACACT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT
* * * * * * *
699745 TTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATACACT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT
*
699792 TTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT
*
699841 TTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT
699890 TTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT
699937 TTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT
699984 TTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT
700031 TTCACATTCATCACATCGGCCATTAGGCCTTA
1 TTCACATTCATCACATCGGCCATTAGGCCTTA
700063 CTATCATTTC
Statistics
Matches: 395, Mismatches: 15, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 212 0.54
48 1 0.00
49 181 0.46
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.32
Consensus pattern (49 bp):
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT
Found at i:699927 original size:192 final size:192
Alignment explanation
Indices: 699600--700059 Score: 798
Period size: 192 Copynumber: 2.4 Consensus size: 192
699590 TAACCATTCC
* *
699600 TTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACGT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAT
*
699665 CGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
66 CGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
* * * * *
699730 TCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACACT
131 TCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACT
*
699792 TTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACAT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAT
699857 CGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
66 CGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
* * *
699922 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
131 TCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACT
699984 TTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACAT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAT
700047 CGGCCATTAGGCC
66 CGGCCATTAGGCC
700060 TTACTATCAT
Statistics
Matches: 255, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
190 40 0.16
192 215 0.84
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.31
Consensus pattern (192 bp):
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAT
CGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
TCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACT
Found at i:709502 original size:11 final size:11
Alignment explanation
Indices: 709470--709503 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
709460 TCCACCTCCT
*
709470 TGCATGATTCA
1 TGCATGAATCA
709481 TGCATGAAATCA
1 TGCATG-AATCA
709493 TGCATGAATCA
1 TGCATGAATCA
709504 AGCAACCAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 11 0.52
12 10 0.48
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (11 bp):
TGCATGAATCA
Found at i:711298 original size:22 final size:22
Alignment explanation
Indices: 711247--711300 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
711237 ATGTCAATTC
* *
711247 TCCTTAACGAAGACTTTAAGCA
1 TCCTTAATGTAGACTTTAAGCA
711269 TCCTTAATGTAGACTTTAAGCA
1 TCCTTAATGTAGACTTTAAGCA
711291 TCCTTAATGT
1 TCCTTAATGT
711301 CTTTGATTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.35
Consensus pattern (22 bp):
TCCTTAATGTAGACTTTAAGCA
Found at i:729653 original size:28 final size:28
Alignment explanation
Indices: 729515--729653 Score: 179
Period size: 28 Copynumber: 5.0 Consensus size: 28
729505 AGTGACTGTA
* * *
729515 CAATGAGGGCCTTAGCCCAATTCAGTAG
1 CAATGTGGGCCTTAGCCCAATACAGTAT
* * *
729543 CAGTGTGGGACTTAGCCCAATACAATAT
1 CAATGTGGGCCTTAGCCCAATACAGTAT
* *
729571 CAATGTGGGACTTAGCCCAATACAATAT
1 CAATGTGGGCCTTAGCCCAATACAGTAT
729599 CAATGTGGGCCTTAGCCCAATACAGTAT
1 CAATGTGGGCCTTAGCCCAATACAGTAT
* * *
729627 CAGTGTTGGCCTTAGCCCAATATAGTA
1 CAATGTGGGCCTTAGCCCAATACAGTA
729654 ACATTACAGT
Statistics
Matches: 99, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 99 1.00
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (28 bp):
CAATGTGGGCCTTAGCCCAATACAGTAT
Found at i:729918 original size:27 final size:27
Alignment explanation
Indices: 729888--730305 Score: 434
Period size: 27 Copynumber: 15.2 Consensus size: 27
729878 GGTATACAAA
729888 TCATTTTACCCTAT-GGGGGTATTTCAG
1 TCATTTTACCCT-TCGGGGGTATTTCAG
* *
729915 TCATTTTACCTTTTGAGGGTTAGGGGTATTTCAG
1 TCATTTTACC-CTT---CG---GGGGTATTTCAG
* *
729949 TCATTTTACCCTTCGAGGGTATTTCAA
1 TCATTTTACCCTTCGGGGGTATTTCAG
*
729976 TCATTTTACCCTTTCGAGGGTATTTC-G
1 TCATTTTACCC-TTCGGGGGTATTTCAG
730003 ATCATTTTACCCTTCGGGGGTATTTC-G
1 -TCATTTTACCCTTCGGGGGTATTTCAG
* *
730030 ATCATTTTACCCTTCGAGGGTATTTTAG
1 -TCATTTTACCCTTCGGGGGTATTTCAG
* *
730058 TCATTTTTACCCTTTGAGGGTATTTC-G
1 TCA-TTTTACCCTTCGGGGGTATTTCAG
* *
730085 ATCATTTTACCCTTCGAGGGTATTTCGG
1 -TCATTTTACCCTTCGGGGGTATTTCAG
* *
730113 TTATTTTACCCTTCGGGGGTATTTCGG
1 TCATTTTACCCTTCGGGGGTATTTCAG
* * *
730140 TTATTTTACCCTTCAGGGGCATTTCAG
1 TCATTTTACCCTTCGGGGGTATTTCAG
* * *
730167 TCATTTTACCCTTTGAGGGTATTTCGG
1 TCATTTTACCCTTCGGGGGTATTTCAG
*
730194 TCATTTTACCCTT-GGGGGTATTTCGG
1 TCATTTTACCCTTCGGGGGTATTTCAG
* *
730220 TTATTTTACCCTTCGGGGGCATTTCAG
1 TCATTTTACCCTTCGGGGGTATTTCAG
* * *
730247 TCATTTTACCCTTCGAGGTTATTTCGG
1 TCATTTTACCCTTCGGGGGTATTTCAG
* *
730274 TCATTTTACCCTT-AGGGGTATTTCGG
1 TCATTTTACCCTTCGGGGGTATTTCAG
730300 TCATTT
1 TCATTT
730306 GCCCACAACT
Statistics
Matches: 341, Mismatches: 35, Indels: 31
0.84 0.09 0.08
Matches are distributed among these distances:
26 40 0.12
27 224 0.66
28 51 0.15
30 1 0.00
31 1 0.00
33 2 0.01
34 22 0.06
ACGTcount: A:0.16, C:0.20, G:0.21, T:0.43
Consensus pattern (27 bp):
TCATTTTACCCTTCGGGGGTATTTCAG
Found at i:729946 original size:34 final size:34
Alignment explanation
Indices: 729903--729968 Score: 114
Period size: 34 Copynumber: 1.9 Consensus size: 34
729893 TTACCCTATG
* *
729903 GGGGTATTTCAGTCATTTTACCTTTTGAGGGTTA
1 GGGGTATTTCAGTCATTTTACCCTTCGAGGGTTA
729937 GGGGTATTTCAGTCATTTTACCCTTCGAGGGT
1 GGGGTATTTCAGTCATTTTACCCTTCGAGGGT
729969 ATTTCAATCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.17, C:0.15, G:0.27, T:0.41
Consensus pattern (34 bp):
GGGGTATTTCAGTCATTTTACCCTTCGAGGGTTA
Found at i:730042 original size:82 final size:81
Alignment explanation
Indices: 729938--730305 Score: 476
Period size: 82 Copynumber: 4.5 Consensus size: 81
729928 TGAGGGTTAG
* * *
729938 GGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCAATCATTTTACCCTTTCGAGGGTATTTC-
1 GGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCC-TTCGAGGGCATTTCA
*
730002 GATCATTTTACCCTTCGG
65 G-TCATTTTACCCTTCGA
* * * *
730020 GGGTATTTCGATCATTTTACCCTTCGAGGGTATTTTAGTCATTTTTACCCTTTGAGGGTATTTC-
1 GGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCAGTCA-TTTTACCCTTCGAGGGCATTTCA
730084 GATCATTTTACCCTTCGA
65 G-TCATTTTACCCTTCGA
* * * *
730102 GGGTATTTCGGTTATTTTACCCTTCGGGGGTATTTCGGTTATTTTACCCTTC-AGGGGCATTTCA
1 GGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCGA-GGGCATTTCA
*
730166 GTCATTTTACCCTTTGA
65 GTCATTTTACCCTTCGA
* * * *
730183 GGGTATTTCGGTCATTTTACCCTT-GGGGGTATTTCGGTTATTTTACCCTTCGGGGGCATTTCAG
1 GGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCGAGGGCATTTCAG
730247 TCATTTTACCCTTCGA
66 TCATTTTACCCTTCGA
* * *
730263 GGTTATTTCGGTCATTTTACCCTTAG-GGGTATTTCGGTCATTT
1 GGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCAGTCATTT
730306 GCCCACAACT
Statistics
Matches: 261, Mismatches: 20, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
80 93 0.36
81 57 0.22
82 103 0.39
83 8 0.03
ACGTcount: A:0.16, C:0.20, G:0.21, T:0.43
Consensus pattern (81 bp):
GGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCGAGGGCATTTCAG
TCATTTTACCCTTCGA
Found at i:730146 original size:54 final size:54
Alignment explanation
Indices: 729938--730305 Score: 481
Period size: 54 Copynumber: 6.8 Consensus size: 54
729928 TGAGGGTTAG
* * **
729938 GGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCAATCATTTTACCCTTTCGA
1 GGGTATTTCGGTCATTTTACCCTTCGGGGGTATTTCGGTCATTTTACCC-TTCGA
* *
729993 GGGTATTTCGATCATTTTACCCTTCGGGGGTATTTCGATCATTTTACCCTTCGA
1 GGGTATTTCGGTCATTTTACCCTTCGGGGGTATTTCGGTCATTTTACCCTTCGA
** * * *
730047 GGGTATTTTAGTCATTTTTACCCTTTGAGGGTATTTCGATCATTTTACCCTTCGA
1 GGGTATTTCGGTCA-TTTTACCCTTCGGGGGTATTTCGGTCATTTTACCCTTCGA
* *
730102 GGGTATTTCGGTTATTTTACCCTTCGGGGGTATTTCGGTTATTTTACCCTTC-A
1 GGGTATTTCGGTCATTTTACCCTTCGGGGGTATTTCGGTCATTTTACCCTTCGA
* * * * *
730155 GGGGCATTTCAGTCATTTTACCCTTTGAGGGTATTTCGGTCATTTTACCCTT-GG
1 -GGGTATTTCGGTCATTTTACCCTTCGGGGGTATTTCGGTCATTTTACCCTTCGA
* * *
730209 GGGTATTTCGGTTATTTTACCCTTCGGGGGCATTTCAGTCATTTTACCCTTCGA
1 GGGTATTTCGGTCATTTTACCCTTCGGGGGTATTTCGGTCATTTTACCCTTCGA
* *
730263 GGTTATTTCGGTCATTTTACCCTT-AGGGGTATTTCGGTCATTT
1 GGGTATTTCGGTCATTTTACCCTTCGGGGGTATTTCGGTCATTT
730306 GCCCACAACT
Statistics
Matches: 273, Mismatches: 36, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
53 61 0.22
54 118 0.43
55 94 0.34
ACGTcount: A:0.16, C:0.20, G:0.21, T:0.43
Consensus pattern (54 bp):
GGGTATTTCGGTCATTTTACCCTTCGGGGGTATTTCGGTCATTTTACCCTTCGA
Found at i:743594 original size:28 final size:27
Alignment explanation
Indices: 743531--743596 Score: 114
Period size: 27 Copynumber: 2.4 Consensus size: 27
743521 ATATTAAGTC
*
743531 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
743558 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
743586 CGCACACTTAG
1 CGCACACTTAG
743597 CGCCAATCTC
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
27 22 0.59
28 15 0.41
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:746815 original size:16 final size:16
Alignment explanation
Indices: 746794--746825 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
746784 AAAGAAGGTC
746794 ATTACCTAATGGGGTT
1 ATTACCTAATGGGGTT
*
746810 ATTACCTAATGTGGTT
1 ATTACCTAATGGGGTT
746826 CATATGAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.12, G:0.22, T:0.41
Consensus pattern (16 bp):
ATTACCTAATGGGGTT
Found at i:747103 original size:61 final size:61
Alignment explanation
Indices: 746999--747201 Score: 262
Period size: 61 Copynumber: 3.3 Consensus size: 61
746989 AAACACCAGT
* * * * * *
746999 TAAAGGACAACCTTTGTGGAAAAACTTTGGACATGAAAACCTTTGTTGCGAGTACTAGATG
1 TAAAGGACAACCTTTGTGGCAAAACTCTGGATAGGAAAACCTTTGTGGCGAGTAATAGATG
** * *
747060 TAAAGGACAACCTTTGTGGCAAAACTCTGGATAGGAATCCCTTTGTGGCGAGTATTGGATG
1 TAAAGGACAACCTTTGTGGCAAAACTCTGGATAGGAAAACCTTTGTGGCGAGTAATAGATG
* * * * *
747121 TAAAGGACAACTTTTGTGGCAAAACTCTGGATAGTAAAGCCTTTGTGGGGAGTAATAGATA
1 TAAAGGACAACCTTTGTGGCAAAACTCTGGATAGGAAAACCTTTGTGGCGAGTAATAGATG
*
747182 TAAATGACAACCTTTGTGGC
1 TAAAGGACAACCTTTGTGGC
747202 TGTTTAAGAA
Statistics
Matches: 123, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
61 123 1.00
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (61 bp):
TAAAGGACAACCTTTGTGGCAAAACTCTGGATAGGAAAACCTTTGTGGCGAGTAATAGATG
Found at i:756389 original size:66 final size:66
Alignment explanation
Indices: 756283--756417 Score: 261
Period size: 66 Copynumber: 2.0 Consensus size: 66
756273 ATATATATAT
756283 ATGATTGCACATGATGGTGCTTCGGTTATGGATTAAATGATGGATGCGTATTGAGTATAATATGG
1 ATGATTGCACATGATGGTGCTTCGGTTATGGATTAAATGATGGATGCGTATTGAGTATAATATGG
756348 A
66 A
*
756349 ATGATTGCATATGATGGTGCTTCGGTTATGGATTAAATGATGGATGCGTATTGAGTATAATATGG
1 ATGATTGCACATGATGGTGCTTCGGTTATGGATTAAATGATGGATGCGTATTGAGTATAATATGG
756414 A
66 A
756415 ATG
1 ATG
756418 CATTAGTTAG
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 68 1.00
ACGTcount: A:0.29, C:0.07, G:0.29, T:0.36
Consensus pattern (66 bp):
ATGATTGCACATGATGGTGCTTCGGTTATGGATTAAATGATGGATGCGTATTGAGTATAATATGG
A
Found at i:758313 original size:29 final size:28
Alignment explanation
Indices: 758277--758354 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
758267 TCATGAGATT
758277 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
758307 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
758334 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
758355 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:758572 original size:174 final size:174
Alignment explanation
Indices: 758307--758634 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
758297 AAATTGTACA
758307 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* * *
758372 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGAGACTTTACCGAGTCAA
*
758437 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCAGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
758481 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
758546 TGTGCGAACTCAATATATATTTTCTATAAATTATTTACATGAAGGGTGAGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGAGACTTTACCGAGTCAA
758611 TTTTGGACAGCAGAAAAGGTAAGT
131 TTTTGGACAGCAGAAAAGGTAAGT
758635 ACCTTGAGTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGAGACTTTACCGAGTCAA
TTTTGGACAGCAGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:760547 original size:79 final size:79
Alignment explanation
Indices: 760411--760628 Score: 230
Period size: 79 Copynumber: 2.7 Consensus size: 79
760401 TTGAATGATG
* * * * **
760411 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTAC-GAGTTACTATATCCGGGTTAAG-TCCGAAGGCATT
760475 TCTGCGAGATACTA-A
64 TCTGCGAGATACTATA
*
760490 TTCCGGGCTAAG-CCCGAAGGCATTTGTACGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATATCCGGGTTAAGT-CCGAAGGCATT
* *
760554 TGTGCGAGTTACTATA
64 TCTGCGAGATACTATA
* * * *
760570 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTA-CTATATCCGGGTT-AAGTCCGAAGG
760629 TACGTGATTT
Statistics
Matches: 118, Mismatches: 14, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
78 1 0.01
79 70 0.59
80 47 0.40
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATATCCGGGTTAAGTCCGAAGGCATTTC
TGCGAGATACTATA
Found at i:760602 original size:40 final size:40
Alignment explanation
Indices: 760411--760602 Score: 203
Period size: 40 Copynumber: 4.8 Consensus size: 40
760401 TTGAATGATG
* * * * *
760411 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTAC-GAGTTACTAAA
* * * * *
760451 TCCGGACTAAGAT-CCGAAGGCATTTCTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTACGAGTTACTAAA
760491 TCCGGGCTAAG-CCCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAA
* *
760530 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTA-AA
* *
760571 -CCGGGCTATGTCCCGAAGGCATTTGAACGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGT
760603 AGCTATATCC
Statistics
Matches: 128, Mismatches: 19, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
39 33 0.26
40 86 0.67
41 9 0.07
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAA
Found at i:765801 original size:114 final size:114
Alignment explanation
Indices: 765601--765828 Score: 447
Period size: 114 Copynumber: 2.0 Consensus size: 114
765591 AAAGCTTCTA
765601 CATTCAAGTTTTACCGTCATTTAAAGGTTGACTCTGCATCAGATCTACGTGGAAAGCGGGAAGGA
1 CATTCAAGTTTTACCGTCATTTAAAGGTTGACTCTGCATCAGATCTACGTGGAAAGCGGGAAGGA
765666 ATAAGTGGTAAGTGCTCATCACTCCAAATCTAGTCTTATTTTTCAAGTT
66 ATAAGTGGTAAGTGCTCATCACTCCAAATCTAGTCTTATTTTTCAAGTT
*
765715 CATTCAAGTTTTACCGTCGTTTAAAGGTTGACTCTGCATCAGATCTACGTGGAAAGCGGGAAGGA
1 CATTCAAGTTTTACCGTCATTTAAAGGTTGACTCTGCATCAGATCTACGTGGAAAGCGGGAAGGA
765780 ATAAGTGGTAAGTGCTCATCACTCCAAATCTAGTCTTATTTTTCAAGTT
66 ATAAGTGGTAAGTGCTCATCACTCCAAATCTAGTCTTATTTTTCAAGTT
765829 AGGAAAAAGC
Statistics
Matches: 113, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
114 113 1.00
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (114 bp):
CATTCAAGTTTTACCGTCATTTAAAGGTTGACTCTGCATCAGATCTACGTGGAAAGCGGGAAGGA
ATAAGTGGTAAGTGCTCATCACTCCAAATCTAGTCTTATTTTTCAAGTT
Found at i:766497 original size:28 final size:28
Alignment explanation
Indices: 766465--766529 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
766455 ATTTACTAGA
*
766465 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
766493 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
766521 ATACCCCTA
1 ATACCCCTA
766530 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:766676 original size:28 final size:27
Alignment explanation
Indices: 766635--766725 Score: 103
Period size: 27 Copynumber: 3.2 Consensus size: 27
766625 GGGGAGCATC
766635 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* **
766663 CTGGTGGCCCTGCCACGTATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
766690 CTGGTGGCACTGCCACAAAAATATCTGTAT
1 CTGGTGGCACTGCCAC--AAATATCTGT-T
766720 CTGGTG
1 CTGGTG
766726 ACTATGTCAC
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
27 23 0.43
28 15 0.28
29 8 0.15
30 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:767213 original size:19 final size:19
Alignment explanation
Indices: 767189--767227 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
767179 TTTTAATTAT
* *
767189 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
767208 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
767227 T
1 T
767228 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:769234 original size:13 final size:13
Alignment explanation
Indices: 769213--769248 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
769203 AATATAATCT
769213 TAAATATTAAATA
1 TAAATATTAAATA
* *
769226 TAAAAATTAAATC
1 TAAATATTAAATA
769239 TAAATATTAA
1 TAAATATTAA
769249 TAAATTTAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (13 bp):
TAAATATTAAATA
Found at i:770099 original size:2 final size:2
Alignment explanation
Indices: 770092--770119 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
770082 ACTCAATTTC
770092 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
770120 TATTTTATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:772350 original size:47 final size:47
Alignment explanation
Indices: 772288--772642 Score: 374
Period size: 47 Copynumber: 7.6 Consensus size: 47
772278 ATCCATAAGT
772288 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
* * * ***
772335 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--TCCATAAGT-
1 GAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTTACATCTCTC
772381 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
* * * ***
772428 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--TCCATAAGT-
1 GAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTTACATCTCTC
772474 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
* * * ***
772521 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--TCCATAAGT-
1 GAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTTACATCTCTC
772567 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
*
772614 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGCTCGGA
772643 CATTCGCATC
Statistics
Matches: 250, Mismatches: 37, Indels: 42
0.76 0.11 0.13
Matches are distributed among these distances:
43 3 0.01
44 12 0.05
46 96 0.38
47 124 0.50
49 12 0.05
50 3 0.01
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:772355 original size:93 final size:93
Alignment explanation
Indices: 772242--772692 Score: 848
Period size: 93 Copynumber: 4.8 Consensus size: 93
772232 GCCCATAAGT
* * * * *
772242 GAACTCGGACTTAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
772307 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
772335 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
772400 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
772428 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
772493 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
772521 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
772586 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
772614 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
772679 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
772693 CAAATATCCT
Statistics
Matches: 352, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
93 352 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:783419 original size:93 final size:92
Alignment explanation
Indices: 783261--783442 Score: 224
Period size: 93 Copynumber: 2.0 Consensus size: 92
783251 TTATTAACTG
* * * *
783261 TAAAATGGTATCGATACCAGGCAAGGTATCAATACTTTGTTAAGGGTATTAATACATTTGATTTT
1 TAAAATGATATCGATACCAGGAAAGGTATCAATAATTTGTTAAGGGTATCAATACATTTGATTTT
*
783326 TGTTCAATTTTTCAAAACATTGAAGCT
66 TGCTCAATTTTTCAAAACATTGAAGCT
* * *
783353 TAAAATGATATCGATACCAGGAAAGGGTATCGATAATTT-TTGCAA-GGTATCGATACTTTTGAT
1 TAAAATGATATCGATACCAGGAAA-GGTATCAATAATTTGTT--AAGGGTATCAATACATTTGAT
* * *
783416 TTTTGCTCGATTTTTCTAAACTTTGAA
63 TTTTGCTCAATTTTTCAAAACATTGAA
783443 ATTCAAATTG
Statistics
Matches: 76, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
92 24 0.32
93 50 0.66
94 2 0.03
ACGTcount: A:0.32, C:0.12, G:0.17, T:0.38
Consensus pattern (92 bp):
TAAAATGATATCGATACCAGGAAAGGTATCAATAATTTGTTAAGGGTATCAATACATTTGATTTT
TGCTCAATTTTTCAAAACATTGAAGCT
Found at i:784164 original size:56 final size:57
Alignment explanation
Indices: 784100--784206 Score: 162
Period size: 56 Copynumber: 1.9 Consensus size: 57
784090 TCATTTTCTT
** *
784100 TTTGGAGAAAATGACATTCATTTCCAAATAATTT-CATTTCTCCATTTTCATTATCA
1 TTTGGAGAAAACCACAATCATTTCCAAATAATTTCCATTTCTCCATTTTCATTATCA
* *
784156 TTTGGAGAAAACCATAATCATTTCCAAATACTTTCCATTTCTCCATTTTCA
1 TTTGGAGAAAACCACAATCATTTCCAAATAATTTCCATTTCTCCATTTTCA
784207 CCATTTCTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
56 29 0.64
57 16 0.36
ACGTcount: A:0.32, C:0.21, G:0.07, T:0.41
Consensus pattern (57 bp):
TTTGGAGAAAACCACAATCATTTCCAAATAATTTCCATTTCTCCATTTTCATTATCA
Found at i:786489 original size:28 final size:27
Alignment explanation
Indices: 786432--786583 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
786422 TAAATTGTGC
* *
786432 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
786459 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
786487 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
786514 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
786542 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
786569 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
786584 GACTTAATAT
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:786497 original size:55 final size:55
Alignment explanation
Indices: 786432--786583 Score: 241
Period size: 55 Copynumber: 2.8 Consensus size: 55
786422 TAAATTGTGC
* *
786432 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* *
786487 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* * *
786542 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
786584 GACTTAATAT
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 90 1.00
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
Found at i:788634 original size:37 final size:37
Alignment explanation
Indices: 788584--788662 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
788574 TTATTACGAA
* * *
788584 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
788621 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
788658 GTCTT
1 GTCTT
788663 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:788906 original size:49 final size:49
Alignment explanation
Indices: 788781--789120 Score: 525
Period size: 49 Copynumber: 7.1 Consensus size: 49
788771 CCCTTCGGGA
* * * * * *
788781 CTTATCACAT-T-TATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
788828 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
788875 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
788924 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
788973 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
789022 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
789069 CCTATTCAC--ATATATACACTTTCACATTCATCCCATCGGCCATTAGGC
1 CTTA-TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
789117 CTTA
1 CTTA
789121 CTATCATTTC
Statistics
Matches: 275, Mismatches: 13, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 84 0.31
48 45 0.16
49 145 0.53
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:794978 original size:15 final size:16
Alignment explanation
Indices: 794951--794980 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
794941 AGATATTCCA
794951 ATTTAGTCCCATTTTT
1 ATTTAGTCCCATTTTT
794967 ATTTAG-CCCATTTT
1 ATTTAGTCCCATTTT
794981 GGCAATTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.20, C:0.20, G:0.07, T:0.53
Consensus pattern (16 bp):
ATTTAGTCCCATTTTT
Found at i:800589 original size:28 final size:28
Alignment explanation
Indices: 800549--800618 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
800539 ATGAAAATTT
** *
800549 CACTAAGCATGCGAGTTTGGTTAAT-GAG
1 CACTAAGTGTGCGAGTTTGATT-ATCGAG
800577 CACTAAGTGTGCGAGTTTGATTATCGAG
1 CACTAAGTGTGCGAGTTTGATTATCGAG
800605 CACTAAGTGTGCGA
1 CACTAAGTGTGCGA
800619 AGGAAAATAT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
27 2 0.05
28 36 0.95
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTTGATTATCGAG
Found at i:803375 original size:38 final size:38
Alignment explanation
Indices: 803330--803437 Score: 132
Period size: 38 Copynumber: 2.8 Consensus size: 38
803320 GGCCTAAAGA
*
803330 CCCGCAGGCTATATGCTGGAATTATATCCGGGTTAAAT
1 CCCGCAGGCTATGTGCTGGAATTATATCCGGGTTAAAT
803368 CCCGCAGGCT-TCGTGCTGGTAA-TATATCCGGGTTAAAT
1 CCCGCAGGCTAT-GTGCTGG-AATTATATCCGGGTTAAAT
* * *
803406 CTCGCAGGCCTA-GTGCTGGTATTATATTCGGG
1 CCCGCAGG-CTATGTGCTGGAATTATATCCGGG
803438 CCTTCGTACC
Statistics
Matches: 61, Mismatches: 4, Indels: 10
0.81 0.05 0.13
Matches are distributed among these distances:
37 2 0.03
38 55 0.90
39 4 0.07
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (38 bp):
CCCGCAGGCTATGTGCTGGAATTATATCCGGGTTAAAT
Found at i:803478 original size:43 final size:43
Alignment explanation
Indices: 803430--803584 Score: 274
Period size: 43 Copynumber: 3.6 Consensus size: 43
803420 GCTGGTATTA
*
803430 TATTCGGGCCTTCGTACCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
803473 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
803516 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATATG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
803559 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
803585 GTAATGCCGG
Statistics
Matches: 107, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 107 1.00
ACGTcount: A:0.12, C:0.26, G:0.32, T:0.30
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:804946 original size:3 final size:3
Alignment explanation
Indices: 804932--804960 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
804922 ATGAGTTGAA
804932 AAT AAT AA- AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
804961 GATATGATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:806075 original size:27 final size:27
Alignment explanation
Indices: 806034--806114 Score: 85
Period size: 27 Copynumber: 3.0 Consensus size: 27
806024 AGCATGGCTG
* *
806034 CCAGAA-CTGATATTGTGACAGAGTCA
1 CCAGAATCAGATATTGTGACAGAGCCA
*
806060 CCAGATAT-AGATATTGTGGCAGAGCCA
1 CCAGA-ATCAGATATTGTGACAGAGCCA
* * *
806087 CCAGAATCAGATAATGTGGCAAAGCCA
1 CCAGAATCAGATATTGTGACAGAGCCA
806114 C
1 C
806115 TTAACAGAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
26 7 0.15
27 40 0.85
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (27 bp):
CCAGAATCAGATATTGTGACAGAGCCA
Found at i:806274 original size:97 final size:98
Alignment explanation
Indices: 806136--806340 Score: 313
Period size: 97 Copynumber: 2.1 Consensus size: 98
806126 AGTGGCACAA
* *
806136 AGCCATCGATAACGGGTCTATAATCGGCACGAAGCCCACAATATCGATACAAAGCCCACAATAAT
1 AGCCATCGATAACGGGTCTATAATCGGCACAAAGCCCACAATATCGATACAAAGCCCACAATAAC
* *
806201 GGCACACAGCCTTCGGTAACATGACCGGCACTC
66 GGCACACAACCTTCGGTAACATGACCGGAACTC
* * * * *
806234 A-CCATTGATAACGGGTCTATCATCGGCACAAAGCCTACAATATTGATACGAAGCCCACAATAAC
1 AGCCATCGATAACGGGTCTATAATCGGCACAAAGCCCACAATATCGATACAAAGCCCACAATAAC
*
806298 GGCACACAACCTTCGGTAACATGATCGGAACTC
66 GGCACACAACCTTCGGTAACATGACCGGAACTC
806331 AGCCATCGAT
1 AGCCATCGAT
806341 CGGTCAACAG
Statistics
Matches: 95, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
97 87 0.92
98 8 0.08
ACGTcount: A:0.34, C:0.29, G:0.19, T:0.18
Consensus pattern (98 bp):
AGCCATCGATAACGGGTCTATAATCGGCACAAAGCCCACAATATCGATACAAAGCCCACAATAAC
GGCACACAACCTTCGGTAACATGACCGGAACTC
Found at i:806385 original size:27 final size:26
Alignment explanation
Indices: 806346--806424 Score: 95
Period size: 27 Copynumber: 3.0 Consensus size: 26
806336 TCGATCGGTC
*
806346 AACAGATATTGTGACAAAGTCACCAG
1 AACAGATATTGTGACAAAGCCACCAG
* *
806372 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGACAAAGCCACCAG
* *
806399 AACAGATATTTGTGGCATAGCCACCA
1 AACAGATA-TTGTGACAAAGCCACCA
806425 AAACGTTTCC
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
26 8 0.17
27 39 0.83
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.20
Consensus pattern (26 bp):
AACAGATATTGTGACAAAGCCACCAG
Found at i:806673 original size:27 final size:28
Alignment explanation
Indices: 806643--806701 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 28
806633 AACACCCTAG
*
806643 GGGTAAAAT-GGTAATTTTACCCTACAA
1 GGGTAAAATCGGTAATTCTACCCTACAA
** *
806670 GGGT-ATCTCGGTAATTCTACCCTACAG
1 GGGTAAAATCGGTAATTCTACCCTACAA
806697 GGGTA
1 GGGTA
806702 TTTCAGTAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
26 2 0.08
27 24 0.92
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (28 bp):
GGGTAAAATCGGTAATTCTACCCTACAA
Found at i:806702 original size:27 final size:27
Alignment explanation
Indices: 806653--806910 Score: 295
Period size: 27 Copynumber: 9.6 Consensus size: 27
806643 GGGTAAAATG
* * * *
806653 GTAATTTTACCCTACAAGGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
806680 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*** **
806707 GTAATTCTATGATATTGGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
806733 GATAATTCTACCTTACAAGGGTATTTTA
1 G-TAATTCTACCCTACAGGGGTATTTCA
806761 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*** **
806788 GTAATTCTATGATATTGGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
806814 GATAATTCTACCTTACAAGGGTATTTTA
1 G-TAATTCTACCCTACAGGGGTATTTCA
806842 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
806869 GTAATTCTACCCTACAGGCGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
806896 GTAATTCTACCCTAC
1 GTAATTCTACCCTAC
806911 CGATATGAGA
Statistics
Matches: 192, Mismatches: 35, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
26 2 0.01
27 188 0.98
28 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:806906 original size:81 final size:81
Alignment explanation
Indices: 806654--806877 Score: 403
Period size: 81 Copynumber: 2.8 Consensus size: 81
806644 GGTAAAATGG
* * * **
806654 TAATTTTACCCTACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTATGA
1 TAATTCTACCTTACAAGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTATGA
806719 TATTGGGGTATTTCGA
66 TATTGGGGTATTTCGA
806735 TAATTCTACCTTACAAGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTATGA
1 TAATTCTACCTTACAAGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTATGA
806800 TATTGGGGTATTTCGA
66 TATTGGGGTATTTCGA
806816 TAATTCTACCTTACAAGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTA
1 TAATTCTACCTTACAAGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTA
806878 CCCTACAGGC
Statistics
Matches: 138, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
81 138 1.00
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (81 bp):
TAATTCTACCTTACAAGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTATGA
TATTGGGGTATTTCGA
Found at i:808807 original size:18 final size:19
Alignment explanation
Indices: 808786--808821 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
808776 ATCAGAACTA
808786 GAATCAAAATG-AGAATCC
1 GAATCAAAATGCAGAATCC
*
808804 GAATCAAACTGCAGAATC
1 GAATCAAAATGCAGAATC
808822 AAATTCAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.47, C:0.19, G:0.17, T:0.17
Consensus pattern (19 bp):
GAATCAAAATGCAGAATCC
Found at i:809034 original size:27 final size:27
Alignment explanation
Indices: 808993--809074 Score: 78
Period size: 27 Copynumber: 3.1 Consensus size: 27
808983 CAGCATGGCT
* * *
808993 ACCAGAA-CTGATATTGTGATAGAGTC
1 ACCAGAATCAGATATTGTGACAGAGCC
*
809019 ACCAGATAT-AGATATTGTGGCAGAGCC
1 ACCAGA-ATCAGATATTGTGACAGAGCC
* * *
809046 ACCAGAATCAGATAATGTGGCAAAGCC
1 ACCAGAATCAGATATTGTGACAGAGCC
809073 AC
1 AC
809075 TTAACAGAAT
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
26 8 0.17
27 39 0.83
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.21
Consensus pattern (27 bp):
ACCAGAATCAGATATTGTGACAGAGCC
Found at i:809326 original size:27 final size:26
Alignment explanation
Indices: 809287--809369 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
809277 TCGATCGGTC
* *
809287 AACAGATATTGTGACAAAGTCACCAG
1 AACAGATATTGTGGCAAAGCCACCAG
* *
809313 ATACAGATATTGTGGCAGAGCCATCAG
1 A-ACAGATATTGTGGCAAAGCCACCAG
*
809340 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAAAGCCACCAG
809367 AAC
1 AAC
809370 GCTTCCTCCA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 8 0.16
27 41 0.84
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.20
Consensus pattern (26 bp):
AACAGATATTGTGGCAAAGCCACCAG
Found at i:809623 original size:27 final size:27
Alignment explanation
Indices: 809593--809981 Score: 185
Period size: 27 Copynumber: 14.4 Consensus size: 27
809583 GGGGTAAAAT
809593 GGTAATTTTATCCC-ATAAGGGTATCTC
1 GGTAATTTTA-CCCTATAAGGGTATCTC
* *
809620 GGTAATTTTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTATAAGGGTATCTC
* * * * * * *
809647 AGTAATTCTACCATACAGGGGTATTTT
1 GGTAATTTTACCCTATAAGGGTATCTC
* * * * *
809674 GGTAATTCTATCTTACAAGGGTATTTC
1 GGTAATTTTACCCTATAAGGGTATCTC
* * * *
809701 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTATAAGGGTATCTC
* * * *
809728 AGTAATTCTACCCTA-CAGGCGTATTTC
1 GGTAATTTTACCCTATAAGG-GTATCTC
* * * * *
809755 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTATAAGGGTATCTC
* * * *
809782 GGT-ATTTCTACTCTACATGGGTATTTC
1 GGTAATTT-TACCCTATAAGGGTATCTC
* *** * *
809809 AGTAATTTTACCCTACGGGGGTATTTT
1 GGTAATTTTACCCTATAAGGGTATCTC
* * * * *
809836 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTATAAGGGTATCTC
* * *
809863 GGT-ATTTCTACCCTAAAAGGGTATTTA
1 GGTAATTT-TACCCTATAAGGGTATCTC
* * *
809890 GGTAATTTTACCCTACAAGGGCATTTC
1 GGTAATTTTACCCTATAAGGGTATCTC
* * * *
809917 GGTAATTCTAACCTAT-AGTGGTATTTT
1 GGTAATTTTACCCTATAAG-GGTATCTC
* * * *
809944 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTTTACCCTATAAGGGTATCTC
*
809971 AGTAATTTTAC
1 GGTAATTTTAC
809982 AAATCGAGGG
Statistics
Matches: 302, Mismatches: 51, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
26 13 0.04
27 277 0.92
28 12 0.04
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACCCTATAAGGGTATCTC
Found at i:809652 original size:54 final size:53
Alignment explanation
Indices: 809594--810004 Score: 373
Period size: 54 Copynumber: 7.6 Consensus size: 53
809584 GGGTAAAATG
* * * * *
809594 GTAATTTTATCCCATAAGGGTATCTCGGTAATTTTACCCTATAGGGGTATTTCA
1 GTAATTCTA-CCCATAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCA
* * *
809648 GTAATTCTA-CCATACAGGGGTATTTTGGTAATTCTATCTTACAAGGGTATTTCA
1 GTAATTCTACCCATA-A-GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCA
* *
809702 GTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCCTAC-AGGCGTATTTCA
1 GTAATTCTACCC-ATAAGGGTATTTCGGTAATTCTACCCTACAAGG-GTATTTCA
* * *
809756 GTAATTCTACCC-TACAGGGGTATTTCGGTATTTCTACTCTACATGGGTATTTCA
1 GTAATTCTACCCATA-A-GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCA
* * ** * *
809810 GTAATTTTACCC-TACGGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCATA--AGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCA
* * * * * *
809864 GTATTTCTACCCTAAAAGGGTATTTAGGTAATTTTACCCTACAAGGGCATTTCG
1 GTAATTCTACCC-ATAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCA
* **
809918 GTAATTCTAACC-TATAGTGGTATTTTAGTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCATA-AG-GGTATTTCGGTAATTCTACCCTACAAGGGTATTTCA
* ** * *
809972 GTAATTTTACAAATCGAGGGTATTTCAGTAATT
1 GTAATTCTACCCAT-AAGGGTATTTCGGTAATT
810005 TTACAAACTG
Statistics
Matches: 292, Mismatches: 50, Indels: 30
0.78 0.13 0.08
Matches are distributed among these distances:
52 8 0.03
53 6 0.02
54 267 0.91
55 7 0.02
56 4 0.01
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.38
Consensus pattern (53 bp):
GTAATTCTACCCATAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCA
Found at i:809717 original size:81 final size:81
Alignment explanation
Indices: 809609--809977 Score: 427
Period size: 81 Copynumber: 4.6 Consensus size: 81
809599 TTTATCCCAT
* * * * * *
809609 AAGGGTATCTCGGTAATTTTACCCTATAGGGGTATTTCAGTAATTCTACCATACAGGGGTATTTT
1 AAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
* * *
809674 GGTAATTCTATCTTAC
66 AGTAATTCTACCCTAC
* * * *
809690 AAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCCTACAGGCGTATTTC
1 AAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
809755 AGTAATTCTACCCTAC
66 AGTAATTCTACCCTAC
* * * * * * *
809771 AGGGGTATTTCGGTATTTCTACTCTACATGGGTATTTCAGTAATTTTACCCTACGGGGGTATTTT
1 AAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
809836 AGTAATTCTACCCTAC
66 AGTAATTCTACCCTAC
* * * * * *
809852 AGGGGTATTTCGGTATTTCTACCCTAAAAGGGTATTT-AGGTAATTTTACCCTACAAGGGCATTT
1 AAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCA-GTAATTCTACCCTACAGGGGTATTT
* *
809916 CGGTAATTCTAACCTA-
65 CAGTAATTCTACCCTAC
* **
809932 TAGTGGTATTTTAGTAATTCTACCCTACAAGGGTATTTCAGTAATT
1 AAG-GGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATT
809978 TTACAAATCG
Statistics
Matches: 251, Mismatches: 34, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
80 2 0.01
81 248 0.99
82 1 0.00
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (81 bp):
AAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
AGTAATTCTACCCTAC
Found at i:809991 original size:27 final size:27
Alignment explanation
Indices: 809961--810220 Score: 250
Period size: 27 Copynumber: 9.7 Consensus size: 27
809951 CTACCCTACA
809961 AGGGTATTTCAGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
809988 AGGGTATTTCAGTAATTTTACAAA-CTG
1 AGGGTATTTCAGTAATTTTACAAATC-G
*
810015 AGGGTATTTC-GATAATTTTACAAGTCG
1 AGGGTATTTCAG-TAATTTTACAAATCG
* *
810042 AGGGTATTTTAGTAATTTTAC-AATTG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
810068 ACGGTATTTCGGTAATTTTATAAA-CTG
1 AGGGTATTTCAGTAATTTTACAAATC-G
* * *
810095 GGGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCAGTAATTTTACAAATCG
810122 AGGGTATTTCAGTAATTTTAC-AATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
** * *
810148 ACAGTATTTCGGTAATTTTATAAATC-
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
810174 AGGGGTACTTT-GGTAATTTTACAACT-G
1 A-GGGTA-TTTCAGTAATTTTACAAATCG
* *
810201 GGGGTATTTTAGTAATTTTA
1 AGGGTATTTCAGTAATTTTA
810221 GTAAATTAAA
Statistics
Matches: 193, Mismatches: 26, Indels: 29
0.78 0.10 0.12
Matches are distributed among these distances:
25 3 0.02
26 61 0.32
27 120 0.62
28 9 0.05
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.40
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAATCG
Found at i:810021 original size:81 final size:81
Alignment explanation
Indices: 809610--810164 Score: 355
Period size: 81 Copynumber: 6.9 Consensus size: 81
809600 TTATCCCATA
* * * * * * *
809610 AGGGTATCTCGGTAATTTTACCCTATAGGGGTATTTCAGTAATTCTACCATAC-AGGGGTATTTT
1 AGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTTTACAATACGA-GGGTATTTC
* ** *
809674 GGTAATTCTATCTTAC-A
65 AGTAATTCTA-CAAACTG
* * * * **
809691 AGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCCTAC-AGGCGTATTTC
1 AGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTTTACAATACGAGG-GTATTTC
** *
809755 AGTAATTCTACCCTACAG
65 AGTAATTCTA-CAAACTG
* * * ** * *
809773 -GGGTATTTCGGTATTTCTACTCTACATGGGTATTTCAGTAATTTTACCCTACGGGGGTATTTTA
1 AGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTTTACAATACGAGGGTATTTCA
** *
809837 GTAATTCTACCCTACAG
66 GTAATTCTA-CAAACTG
* * ** * *
809854 -GGGTATTTCGGTATTTCTACCCTAAAAGGGTATTT-AGGTAATTTTACCCTACAAGGGCATTTC
1 AGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCA-GTAATTTTACAATACGAGGGTATTTC
* * *
809917 GGTAATTCT--AACCTAT
65 AGTAATTCTACAAACT-G
**
809933 AGTGGTATTTTAGTAATTCTACCCTACAAGGGTATTTCAGTAATTTTACAA-ATCGAGGGTATTT
1 AG-GGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTTTACAATA-CGAGGGTATTT
*
809997 CAGTAATTTTACAAACTG
64 CAGTAATTCTACAAACTG
* * ** * * * *
810015 AGGGTATTTCGATAATTTTACAAGT-CGAGGGTATTTTAGTAATTTTACAAT-TGACGGTATTTC
1 AGGGTATTTCGGTAATTCTAC-CCTACAAGGGTATTTCAGTAATTTTACAATACGAGGGTATTTC
* * *
810078 GGTAATTTTATAAACTG
65 AGTAATTCTACAAACTG
* * ** * **
810095 GGGGTACTTT-GGTAATTTTACAAGT-CGAGGGTATTTCAGTAATTTTACAAT-CGACAGTATTT
1 AGGGTA-TTTCGGTAATTCTAC-CCTACAAGGGTATTTCAGTAATTTTACAATACGAGGGTATTT
*
810157 CGGTAATT
64 CAGTAATT
810165 TTATAAATCA
Statistics
Matches: 401, Mismatches: 59, Indels: 29
0.82 0.12 0.06
Matches are distributed among these distances:
78 1 0.00
80 91 0.23
81 299 0.75
82 6 0.01
83 4 0.01
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.38
Consensus pattern (81 bp):
AGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTTTACAATACGAGGGTATTTCA
GTAATTCTACAAACTG
Found at i:810100 original size:53 final size:52
Alignment explanation
Indices: 809961--810220 Score: 220
Period size: 53 Copynumber: 4.9 Consensus size: 52
809951 CTACCCTACA
* * *
809961 AGGGTATTTCAGTAATTTTACAAA-TCGAGGGTATTTCAGTAATTTTACAAACTG
1 AGGGTATTTCGGTAATTTTA-AAACT-GAGGGTATTTTAGTAATTTTAC-AATTG
* * *
810015 AGGGTATTTCGATAATTTTACAAGTCGAGGGTATTTTAGTAATTTTACAATTG
1 AGGGTATTTCGGTAATTTTAAAACT-GAGGGTATTTTAGTAATTTTACAATTG
* * * * *
810068 ACGGTATTTCGGTAATTTTATAAACTGGGGGTACTTTGGTAATTTTACAAGTCG
1 AGGGTATTTCGGTAATTTTA-AAACTGAGGGTATTTTAGTAATTTTACAA-TTG
* * ** ** * * *
810122 AGGGTATTTCAGTAATTTTACAA-TCGACAGTATTTCGGTAATTTTATAAATC
1 AGGGTATTTCGGTAATTTTAAAACT-GAGGGTATTTTAGTAATTTTACAATTG
* *
810174 AGGGGTACTTT-GGTAATTTTACAACTGGGGGTATTTTAGTAATTTTA
1 A-GGGTA-TTTCGGTAATTTTAAAACTGAGGGTATTTTAGTAATTTTA
810221 GTAAATTAAA
Statistics
Matches: 168, Mismatches: 31, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
52 2 0.01
53 98 0.58
54 68 0.40
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.40
Consensus pattern (52 bp):
AGGGTATTTCGGTAATTTTAAAACTGAGGGTATTTTAGTAATTTTACAATTG
Found at i:810111 original size:80 final size:80
Alignment explanation
Indices: 809961--810220 Score: 364
Period size: 80 Copynumber: 3.2 Consensus size: 80
809951 CTACCCTACA
* * * *
809961 AGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACTGAGGGTA-TTTC
1 AGGGTATTTCAGTAATTTTAC-AATCGACGGTATTTCGGTAATTTTATAAACTGGGGGTACTTT-
*
810025 GATAATTTTACAAGTCG
64 GGTAATTTTACAAGTCG
* *
810042 AGGGTATTTTAGTAATTTTACAATTGACGGTATTTCGGTAATTTTATAAACTGGGGGTACTTTGG
1 AGGGTATTTCAGTAATTTTACAATCGACGGTATTTCGGTAATTTTATAAACTGGGGGTACTTTGG
810107 TAATTTTACAAGTCG
66 TAATTTTACAAGTCG
* *
810122 AGGGTATTTCAGTAATTTTACAATCGACAGTATTTCGGTAATTTTATAAA-TCAGGGGTACTTTG
1 AGGGTATTTCAGTAATTTTACAATCGACGGTATTTCGGTAATTTTATAAACT-GGGGGTACTTTG
*
810186 GTAATTTTACAACT-G
65 GTAATTTTACAAGTCG
* *
810201 GGGGTATTTTAGTAATTTTA
1 AGGGTATTTCAGTAATTTTA
810221 GTAAATTAAA
Statistics
Matches: 163, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
79 20 0.12
80 120 0.74
81 23 0.14
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.40
Consensus pattern (80 bp):
AGGGTATTTCAGTAATTTTACAATCGACGGTATTTCGGTAATTTTATAAACTGGGGGTACTTTGG
TAATTTTACAAGTCG
Found at i:816999 original size:40 final size:40
Alignment explanation
Indices: 816946--817101 Score: 235
Period size: 40 Copynumber: 3.9 Consensus size: 40
816936 TTGAGAGTTA
816946 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
816986 TATATCCAGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
817026 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
817066 TATATCTGGGCTAA-ACCTCGAAG-GCATTCGTGCTGG
1 TATATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCTGG
817102 AATTATGAGG
Statistics
Matches: 106, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
39 14 0.13
40 92 0.87
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
Found at i:817174 original size:29 final size:28
Alignment explanation
Indices: 817139--817267 Score: 118
Period size: 29 Copynumber: 4.5 Consensus size: 28
817129 CTTCAACCGA
* *
817139 GCACTATGTGTGCCAGATCAGTAGTTGAG
1 GCACTATGTGTGCGAGATC-GTAATTGAG
* * *
817168 GCACTATGTGTGCGAGTTCTTCAATCGA-
1 GCACTATGTGTGCGAGATCGT-AATTGAG
*
817196 GCACTATGTGTGCGAGATTGGTAATTGAG
1 GCACTATGTGTGCGAGA-TCGTAATTGAG
** * *
817225 GCACTATGTGTGCGACTTCTTTAATCGA-
1 GCACTATGTGTGCGAGATC-GTAATTGAG
817253 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
817268 AATCAGTCAG
Statistics
Matches: 82, Mismatches: 14, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
28 38 0.46
29 44 0.54
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGTAATTGAG
Found at i:817197 original size:57 final size:57
Alignment explanation
Indices: 817107--817295 Score: 238
Period size: 57 Copynumber: 3.3 Consensus size: 57
817097 GCTGGAATTA
* * * * *
817107 TGAGGCACTGTGTGTGCAAGCTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGT
** *
817164 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAAT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGT
* * *
817221 TGAGGCACTATGTGTGCGACTTCTTTAATCGAGCACTATGTGTGCGAAATCAGTCAG-
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGT-AGT
* *
817278 TG-GGCACTGTGTATGCGA
1 TGAGGCACTATGTGTGCGA
817296 AGTGTGTTTC
Statistics
Matches: 115, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
56 14 0.12
57 100 0.87
58 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (57 bp):
TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGT
Found at i:817208 original size:28 final size:27
Alignment explanation
Indices: 817111--817267 Score: 134
Period size: 28 Copynumber: 5.6 Consensus size: 27
817101 GAATTATGAG
* * * *
817111 GCACTGTGTGTGCAAGCTCTTCAACCGA
1 GCACTATGTGTGCGAGTTCTT-AATCGA
* * * * *
817139 GCACTATGTGTGCCAGATCAGTAGTTGA
1 GCACTATGTGTGCGAGTTC-TTAATCGA
817167 GGCACTATGTGTGCGAGTTCTTCAATCGA
1 -GCACTATGTGTGCGAGTTCTT-AATCGA
** *
817196 GCACTATGTGTGCGAGATTGGTAATTGA
1 GCACTATGTGTGCGAG-TTCTTAATCGA
*
817224 GGCACTATGTGTGCGACTTCTTTAATCGA
1 -GCACTATGTGTGCGAGTTC-TTAATCGA
817253 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
817268 AATCAGTCAG
Statistics
Matches: 104, Mismatches: 19, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
28 58 0.56
29 46 0.44
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (27 bp):
GCACTATGTGTGCGAGTTCTTAATCGA
Found at i:817284 original size:28 final size:27
Alignment explanation
Indices: 817139--817295 Score: 84
Period size: 28 Copynumber: 5.6 Consensus size: 27
817129 CTTCAACCGA
* *
817139 GCACTATGTGTGCCAGATCAGT-AGTTGAG
1 GCACTATGTGTGCGAGATC-GTCA-ATG-G
* * *
817168 GCACTATGTGTGCGAGTTCTTCAATCGA
1 GCACTATGTGTGCGAGATCGTCAAT-GG
*
817196 GCACTATGTGTGCGAGATTGGT-AATTGAG
1 GCACTATGTGTGCGAGA-TCGTCAA-TG-G
** * * *
817225 GCACTATGTGTGCGACTTCTTTAATCGA
1 GCACTATGTGTGCGAGATCGTCAAT-GG
* *
817253 GCACTATGTGTGCGAAATCAGTCAGTGG
1 GCACTATGTGTGCGAGATC-GTCAATGG
* *
817281 GCACTGTGTATGCGA
1 GCACTATGTGTGCGA
817296 AGTGTGTTTC
Statistics
Matches: 98, Mismatches: 22, Indels: 17
0.72 0.16 0.12
Matches are distributed among these distances:
28 55 0.56
29 43 0.44
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (27 bp):
GCACTATGTGTGCGAGATCGTCAATGG
Found at i:818183 original size:55 final size:54
Alignment explanation
Indices: 818099--818208 Score: 211
Period size: 55 Copynumber: 2.0 Consensus size: 54
818089 GGGACCGGTG
818099 AATTGTATACTAGGCTAATAGCCAAATTAGTTGATGGCTGTCAAGTTTATTTGGA
1 AATTGTATACTAGGCTAATAGCCAAATTAGTTGATGGC-GTCAAGTTTATTTGGA
818154 AATTGTATACTAGGCTAATAGCCAAATTAGTTGATGGCGTCAAGTTTATTTGGA
1 AATTGTATACTAGGCTAATAGCCAAATTAGTTGATGGCGTCAAGTTTATTTGGA
818208 A
1 A
818209 CTTTGGGTTA
Statistics
Matches: 55, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
54 17 0.31
55 38 0.69
ACGTcount: A:0.32, C:0.11, G:0.22, T:0.35
Consensus pattern (54 bp):
AATTGTATACTAGGCTAATAGCCAAATTAGTTGATGGCGTCAAGTTTATTTGGA
Found at i:820501 original size:15 final size:14
Alignment explanation
Indices: 820451--820491 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 14
820441 TGACTAGTAG
820451 TAGGGATTTTGAGACT
1 TAGGGATTTT-AGA-T
820467 TAGGAGATTTTAGAT
1 TAGG-GATTTTAGAT
820482 TAGGGATTTT
1 TAGGGATTTT
820492 CAATTTAGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 6 0.25
15 5 0.21
16 7 0.29
17 6 0.25
ACGTcount: A:0.27, C:0.02, G:0.29, T:0.41
Consensus pattern (14 bp):
TAGGGATTTTAGAT
Found at i:821314 original size:28 final size:28
Alignment explanation
Indices: 821274--821331 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
821264 GAATAAGTTG
821274 GTTTATTTATTTATTCCAGCTCAAATAA
1 GTTTATTTATTTATTCCAGCTCAAATAA
*
821302 GTTTGTTTATTTATTCCAGCTCAAATAA
1 GTTTATTTATTTATTCCAGCTCAAATAA
821330 GT
1 GT
821332 GTTAGTATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.29, C:0.14, G:0.10, T:0.47
Consensus pattern (28 bp):
GTTTATTTATTTATTCCAGCTCAAATAA
Found at i:830382 original size:17 final size:16
Alignment explanation
Indices: 830333--830379 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
830323 TCTTTTAGTA
* *
830333 AAGAAAGAATATGCCT
1 AAGAAAGAGTACGCCT
830349 AAGAAAGAGTACGCCT
1 AAGAAAGAGTACGCCT
830365 AAGGAAA-AGTACGCC
1 AA-GAAAGAGTACGCC
830380 CTAGAGTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
16 24 0.86
17 4 0.14
ACGTcount: A:0.47, C:0.17, G:0.23, T:0.13
Consensus pattern (16 bp):
AAGAAAGAGTACGCCT
Found at i:831762 original size:25 final size:25
Alignment explanation
Indices: 831728--831838 Score: 116
Period size: 25 Copynumber: 4.4 Consensus size: 25
831718 AACCAAACCG
*
831728 AGCCTTTGTGGCAAGTAATTTGTAA
1 AGCCTTTGTGGCAAGTTATTTGTAA
831753 AGCCTTTGTGGCAAGTTATTTGTAA
1 AGCCTTTGTGGCAAGTTATTTGTAA
* ** *
831778 AGCCATTGTGGCGTGTTATCTGTAA
1 AGCCTTTGTGGCAAGTTATTTGTAA
* * * *
831803 AACCTTTGTGACGAA-TTATCTGAAA
1 AGCCTTTGTGGC-AAGTTATTTGTAA
*
831828 AGCCTATGTGG
1 AGCCTTTGTGG
831839 TGTCTTGCAG
Statistics
Matches: 71, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
25 71 1.00
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.35
Consensus pattern (25 bp):
AGCCTTTGTGGCAAGTTATTTGTAA
Found at i:841608 original size:35 final size:35
Alignment explanation
Indices: 841561--841638 Score: 95
Period size: 35 Copynumber: 2.2 Consensus size: 35
841551 GTGTCGCCTT
* * *
841561 GAAGGACTTATATA-CAGTTTACATGGTGTTACCCC
1 GAAGGACCTATATACCA-TTTACATGATGTCACCCC
* *
841596 GAATGACCTATATACCATTTACATGATGTCACCCT
1 GAAGGACCTATATACCATTTACATGATGTCACCCC
841631 GAAGGACC
1 GAAGGACC
841639 AGTTGATAAC
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
35 34 0.94
36 2 0.06
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (35 bp):
GAAGGACCTATATACCATTTACATGATGTCACCCC
Found at i:842737 original size:28 final size:28
Alignment explanation
Indices: 842677--842731 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 28
842667 AATATAATAT
*
842677 AATTA-TAAAATAATTAAATTTTACTTA
1 AATTATTAAAATAATTAAATTTTAATTA
*
842704 AATTATTAAAAT-ATTTAATTTTAATTA
1 AATTATTAAAATAATTAAATTTTAATTA
842731 A
1 A
842732 TTTTATAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 19 0.76
28 6 0.24
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (28 bp):
AATTATTAAAATAATTAAATTTTAATTA
Found at i:845315 original size:39 final size:40
Alignment explanation
Indices: 845259--845403 Score: 163
Period size: 40 Copynumber: 3.6 Consensus size: 40
845249 AGTGACAACA
*
845259 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
845299 TCCGGGCTAAG-CCCGAAGGCATTTGTTCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
845338 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
845377 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
845404 AACGAGGAGC
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
39 35 0.39
40 54 0.61
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:845425 original size:79 final size:79
Alignment explanation
Indices: 845272--845436 Score: 185
Period size: 79 Copynumber: 2.1 Consensus size: 79
845262 GGACTAAGAT
* ** *
845272 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTTCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
845337 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
845351 CCGAAGGCATTTGTGTGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* *
845413 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAATC
845430 CCGAAGG
1 CCGAAGG
845437 TACGTGATTT
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
78 3 0.04
79 45 0.62
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:873893 original size:6 final size:6
Alignment explanation
Indices: 873872--873944 Score: 103
Period size: 6 Copynumber: 12.2 Consensus size: 6
873862 GTCGAAACCA
*
873872 TTCC-T TTCCTT GTCCTT TTCCTT TTCCTTT TTCCTT TTCCTT TTCCTT
1 TTCCTT TTCCTT TTCCTT TTCCTT TTCC-TT TTCCTT TTCCTT TTCCTT
* *
873920 TTTCTT TTTCTT TTCCTT TTCCTT T
1 TTCCTT TTCCTT TTCCTT TTCCTT T
873945 ACATAGATGT
Statistics
Matches: 62, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
5 4 0.06
6 52 0.84
7 6 0.10
ACGTcount: A:0.00, C:0.30, G:0.01, T:0.68
Consensus pattern (6 bp):
TTCCTT
Found at i:876030 original size:15 final size:16
Alignment explanation
Indices: 875998--876041 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 16
875988 TAATTATACA
*
875998 TAATAAAA-ATAAATT
1 TAATAAAATTTAAATT
876013 TAATAAAATTTAAA-T
1 TAATAAAATTTAAATT
*
876028 TAATAGAATTTAAA
1 TAATAAAATTTAAA
876042 ATTGAAGTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
15 22 0.85
16 4 0.15
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.36
Consensus pattern (16 bp):
TAATAAAATTTAAATT
Found at i:880590 original size:44 final size:44
Alignment explanation
Indices: 880529--880615 Score: 138
Period size: 44 Copynumber: 2.0 Consensus size: 44
880519 CAGGTCAAAT
880529 AATATTAAAATAACCTACACTAATCAAAGTTTAAGTGGGAAACA
1 AATATTAAAATAACCTACACTAATCAAAGTTTAAGTGGGAAACA
* * **
880573 AATATTAAAATAACCTACACTATTTAGGGTTTAAGTGGGAAAC
1 AATATTAAAATAACCTACACTAATCAAAGTTTAAGTGGGAAAC
880616 TAAAAATAGA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.46, C:0.13, G:0.14, T:0.28
Consensus pattern (44 bp):
AATATTAAAATAACCTACACTAATCAAAGTTTAAGTGGGAAACA
Found at i:881474 original size:158 final size:158
Alignment explanation
Indices: 881168--881489 Score: 432
Period size: 158 Copynumber: 2.0 Consensus size: 158
881158 ACATATGTCT
* * * * *
881168 AACATCTGATAGTGTCTTGATTGTCTCGTCATGCATCCTGATCTGAACAGTAACAACACCGGTTA
1 AACATCTGACAGTGTCTTGATTGTCCCATCATGCATCCTGATCTGAACAGTAACAACAACAGTTA
**
881233 CTTTACTAGGTAAGTCATTCTTTAGGCACACAAATCCACCTTCAACTTAATTGTATGTAGAGAAC
66 CTTTACTAGGTAAGTCATTCCCTAGGCACACAAATCCACCTTCAACTTAATTGTATGTAGAGAAC
* *
881298 TAGTCCCTATTGGAACACATGTGGAACG
131 CAGACCCTATTGGAACACATGTGGAACG
* * *
881326 AACATCTGACAGTGTCTTGATTGTCCCATCATGCATCCTGATTTGAATAGTACCAACAACAGTTA
1 AACATCTGACAGTGTCTTGATTGTCCCATCATGCATCCTGATCTGAACAGTAACAACAACAGTTA
* * *
881391 CTTTACTGGGTAAGTCATTCCCTAGGCATACAACTCCACCTTCAA-TTGAATTGTATGT-GAAGA
66 CTTTACTAGGTAAGTCATTCCCTAGGCACACAAATCCACCTTCAACTT-AATTGTATGTAG-AGA
* * *
881454 ACCAGACCCTGTTGGGACACACATATGGAAAG
129 ACCAGACCCTATT-GGA-ACACATGTGGAACG
881486 AACA
1 AACA
881490 CCCCAAATCC
Statistics
Matches: 142, Mismatches: 18, Indels: 6
0.86 0.11 0.04
Matches are distributed among these distances:
157 3 0.02
158 120 0.85
159 3 0.02
160 16 0.11
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.29
Consensus pattern (158 bp):
AACATCTGACAGTGTCTTGATTGTCCCATCATGCATCCTGATCTGAACAGTAACAACAACAGTTA
CTTTACTAGGTAAGTCATTCCCTAGGCACACAAATCCACCTTCAACTTAATTGTATGTAGAGAAC
CAGACCCTATTGGAACACATGTGGAACG
Found at i:882733 original size:44 final size:44
Alignment explanation
Indices: 882664--882754 Score: 137
Period size: 44 Copynumber: 2.1 Consensus size: 44
882654 GTAGGTCAAA
* *
882664 TAATATTCAAATAACCTACACTAATCAAAGTTGAAGTGTGAAAC
1 TAATATTAAAATAACCTACACTAATCAAAGTTGAAGTGGGAAAC
* * *
882708 TAATATTAAAATAACTTACATTAATCAAAGTTTAAGTGGGAAAC
1 TAATATTAAAATAACCTACACTAATCAAAGTTGAAGTGGGAAAC
882752 TAA
1 TAA
882755 AACTAGAGTT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.47, C:0.12, G:0.11, T:0.30
Consensus pattern (44 bp):
TAATATTAAAATAACCTACACTAATCAAAGTTGAAGTGGGAAAC
Found at i:883952 original size:138 final size:138
Alignment explanation
Indices: 883751--884016 Score: 442
Period size: 138 Copynumber: 1.9 Consensus size: 138
883741 GTTATATTTT
* * *
883751 CAAAAGAATATTAATTGACATGTCTTTTATATTTTGACCGAAATTAATTAATATAACTGTTTATA
1 CAAAAGAATATTAATTGACATGCCTTTTATATTTTGACAGAAATTAATTAATATAACTATTTATA
* *
883816 TTAATAAATTCAGTAAAATATATACAATTAATATTGTGTATGAATTAAATTCATATATTAATTAT
66 TTAATAAATTCAGTAAAATATACACAATTAATATTGTGTATGAATCAAATTCATATATTAATTAT
883881 ATTCTTTC
131 ATTCTTTC
** *
883889 CAAAAGAATATTAATTTCCATGCCTTTTATATTTTGACAGAAATTAATTAATATAATTATTTATA
1 CAAAAGAATATTAATTGACATGCCTTTTATATTTTGACAGAAATTAATTAATATAACTATTTATA
* *
883954 TTAATAAATTCGGTAAAATATACACAATTAATATTTTGTATGAATCAAATTCATATATTAATT
66 TTAATAAATTCAGTAAAATATACACAATTAATATTGTGTATGAATCAAATTCATATATTAATT
884017 TTTTCTATGT
Statistics
Matches: 118, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
138 118 1.00
ACGTcount: A:0.42, C:0.08, G:0.07, T:0.43
Consensus pattern (138 bp):
CAAAAGAATATTAATTGACATGCCTTTTATATTTTGACAGAAATTAATTAATATAACTATTTATA
TTAATAAATTCAGTAAAATATACACAATTAATATTGTGTATGAATCAAATTCATATATTAATTAT
ATTCTTTC
Done.