Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold6993.1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8700
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Found at i:842 original size:262 final size:262
Alignment explanation
Indices: 329--844 Score: 809
Period size: 262 Copynumber: 2.0 Consensus size: 262
319 TGTGTTTTTT
*
329 AAAATTAATAATTTGAAACGATATTCGGTCGAATTTGCATTAAAATTCGAGACGCAAGTGCAATA
1 AAAATTAATAATTTGAAACGATATTCGGTCGAATTTACATTAAAATTCGAGACGCAAGTGCAATA
* *
394 AGGGTCAGCCTTTATAATAATAGATTGCGCAAGAGTTGACGGGTGCGATCATAACAGCACAAATG
66 AGGGTCAGCCCTTATAATAATAGATTGCGCAAAAGTTGACGGGTGCGATCATAACAGCACAAATG
* * *
459 CACCGGATCTCATTAGAACTCCGTAATTTAGCGTGCTTGGGCGAGATTAGTACTAGATGGGCGAC
131 CACCAGATCTCATTAGAACTCCGCAATTTAGCGTGCTTGGGCGAGATTAGTACTAGATGCGCGAC
* * **
524 CTCTTTGGAAGTCCTCATGTTGCACCCTTCCCATTTTATTTCTTATAAAGTTTTTTTAATTTTTT
196 CTCTTTGCAAGTCCTCATGTTGCACCCCTCCCATTTTATTTCCGATAAAGTTTTTTTAATTTTTT
589 GA
261 GA
* * *
591 AAAATTAATAATTTGAAACGATATTTGGTCGAATTTACATTAAAATTCGAGGCGCAAGTGCGATA
1 AAAATTAATAATTTGAAACGATATTCGGTCGAATTTACATTAAAATTCGAGACGCAAGTGCAATA
*
656 AGGGTCAGCCCTTAT-ATAAATAGATTGCGCAAAAGTTGACGGGTGCGATCATACCAGCACAAAT
66 AGGGTCAGCCCTTATAAT-AATAGATTGCGCAAAAGTTGACGGGTGCGATCATAACAGCACAAAT
* * * * *
720 GTACTAGATCTCATTAGAACTCCGCAATTTAGCTTGCTTGGGCTAGATTAGTACTAGGATGCGTG
130 GCACCAGATCTCATTAGAACTCCGCAATTTAGCGTGCTTGGGCGAGATTAGTACTA-GATGCGCG
* * *
785 ACCTCTTTTCAAGTCCTCATGTTGCACCCCTCCTATTTTATTTCCGATAAATTTTTTTTA
194 ACCTCTTTGCAAGTCCTCATGTTGCACCCCTCCCATTTTATTTCCGATAAAGTTTTTTTA
845 GTTGCATTTT
Statistics
Matches: 230, Mismatches: 22, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
261 2 0.01
262 169 0.73
263 59 0.26
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (262 bp):
AAAATTAATAATTTGAAACGATATTCGGTCGAATTTACATTAAAATTCGAGACGCAAGTGCAATA
AGGGTCAGCCCTTATAATAATAGATTGCGCAAAAGTTGACGGGTGCGATCATAACAGCACAAATG
CACCAGATCTCATTAGAACTCCGCAATTTAGCGTGCTTGGGCGAGATTAGTACTAGATGCGCGAC
CTCTTTGCAAGTCCTCATGTTGCACCCCTCCCATTTTATTTCCGATAAAGTTTTTTTAATTTTTT
GA
Found at i:1299 original size:246 final size:247
Alignment explanation
Indices: 812--1304 Score: 679
Period size: 246 Copynumber: 2.0 Consensus size: 247
802 CATGTTGCAC
* * **
812 CCCTCCTATTTTATTTCCGATAAATTTTTTTTAGTTGCATTTTCTCTACGTGGTGTAACTAATTC
1 CCCTCCCAATTTATTTCCGATAAATTTTTTTTAGTTGCATTTTCTCTACAAGGTGTAACTAATTC
* ** *
877 GTTATTTGCGTTTTGTGAAATAAATAATTTGAAACGTTATTTGGTAGAATTTACATTCAAATTCA
66 GTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGAAATTTGGTAGAATTTACATTAAAATTCA
* * *
942 AGGCAAAAGTGCGATAAGGGGCGGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGAGAT
131 AGGCAAAAGTCCGATAAGAGGCAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGAGAT
* * * ** * *
1007 CATACTAGTACTAATACACCAGATTCCATTAAAACTCTGCAGTTAAGCGTGT
196 CATACCAGCACTAATACACCAGATCCCAGCAAAACTCCGAAGTTAAGCGTGT
*
1059 CCCTCCCAATTTATTT-C-ATATAATTTTTTTTAGTTGCATTTTCT-TCACAAGGTGTAACTCAT
1 CCCTCCCAATTTATTTCCGATA-AATTTTTTTTAGTTGCATTTTCTCT-ACAAGGTGTAACTAAT
* * *
1121 TCGTTATTTGCGTTTTGCGAAATAAATAATTTGAATCGAAATTTGGTCGAATTTGCATTAAAATT
64 TCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGAAATTTGGTAGAATTTACATTAAAATT
* * * *
1186 CGAGGCGAAAGTCCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGTG
129 CAAGGCAAAAGTCCGATAAGAGGCAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGAG
* *
1251 ATCATACCAGCACTAATGCACC-GAATCCCAGCAGAACTCCGAAGTTAAGCGTGT
194 ATCATACCAGCACTAATACACCAG-ATCCCAGCAAAACTCCGAAGTTAAGCGTGT
1305 TTGGGCGAGA
Statistics
Matches: 215, Mismatches: 28, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
245 5 0.02
246 196 0.91
247 14 0.07
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (247 bp):
CCCTCCCAATTTATTTCCGATAAATTTTTTTTAGTTGCATTTTCTCTACAAGGTGTAACTAATTC
GTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGAAATTTGGTAGAATTTACATTAAAATTCA
AGGCAAAAGTCCGATAAGAGGCAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGAGAT
CATACCAGCACTAATACACCAGATCCCAGCAAAACTCCGAAGTTAAGCGTGT
Found at i:1358 original size:548 final size:548
Alignment explanation
Indices: 1--1606 Score: 1728
Period size: 548 Copynumber: 2.9 Consensus size: 548
* * *
1 TAACTCATTCGTTATTTGCGTTATGCGAAATAAATAATATGAAACGAAAGTTGGTCGAATTTGCA
1 TAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGAAATTTGGTCGAATTTGCA
* * * * *
66 TTCAAATTCAAGGCGCAACG-GCGATAAGAGGCCGCCTTTATATGAATAGATTCCGCAAGAGTTG
66 TTAAAATTCGAGGCG-AAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTG
* * * *
130 ACGGGTGCGATCATACCAACACTAATGCACTGAATCCCATCAGAACTCTGTACTTAAGCGTGTTT
130 ACGGGTGCGATCATACCAGCACTAATGCACCGAATCCCATCAGAACTCCG-AATTAAGCGTGTTT
* * *
195 GGGCTAGAGTAGTACTAGGATGGGTGACCTCCTGAGAAGTACTTGCGTTGCACCCCTCCCATTTT
194 GGGCTAGAGTAGTACTAGGATGGGTGACCTCCTG-GAAGTCCTCGTGTTGCACCCCTCCCATTTT
* * * * *
260 ATTT-CATATAATATATTTTTAGTTGCGTTTTCTCCACATGGTGTAACTTATTCATTATTTGTGT
258 ATTTCCATA-AAT-TTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTAATTCATTATTTGCGT
* * * * * * * *
324 TTTTTAAAATTAATAATTTGAAACGATATTCGGTCGAATTTGCATTAAAATTCGAGACGCAAGTG
321 TTTGTGAAATAAATAATTTGAAACGTTATTCGGTAGAATTTGCATTCAAATTCGAGGCGAAAGTG
* *
389 CAATAAGGGTCAGCCTTTATA-ATAATAGATTGCGCAAGAGTTGACGGGTGCGATCATAACAGCA
386 CGATAAGGGGCAGCCTTTATATA-AATAGATTGCGCAAGAGTTGACGGGTGCGATCAT-ACAGCA
* * * * * * * *
453 CAAATGCACCGGATCTCATTAGAACTCCGTAATTTAGCGTGCTTGGGCGAGATTAGTACTAGATG
449 CAAATACACCAGATCTCATTAAAACTCCGCAATTAAGCGTGCCT-GCCCAGATTAGTACTAGAT-
* * ***
518 GGCGACCTCTTTGGAAGTCCTCATGTTGCACCCTTCCCATTTTA
512 ---GACATCTTTGGAAGT-CTCATGTT---CCCTTCACAAGGTA
** * ** * *** ** * *
562 TTTCTTATAAAGTTTTTTTAATTTTTTGAAAAATTAATAATTTGAAACGATATTTGGTCGAATTT
1 TAACTCAT-TCG-TTATTT-GCGTTTTGCGAAATAAATAATTTGAAACGAAATTTGGTCGAATTT
* * * * *
627 ACATTAAAATTCGAGGCGCAAGTGCGATAAG-GGTCAGCCCTTATATAAATAGATTGCGCAAAAG
63 GCATTAAAATTCGAGGCGAAAGTGCGATAAGAGG-CAGCCTTTATATGAATAGATTGCGCAAGAG
* * * * * * *
691 TTGACGGGTGCGATCATACCAGCACAAATGTA-CTAGATCTCATTAGAACTCCGCAATTTAGCTT
127 TTGACGGGTGCGATCATACCAGCACTAATGCACCGA-ATCCCATCAGAACTCCG-AATTAAGCGT
* * * * ** * *
755 GCTTGGGCTAGATTAGTACTAGGATGCGTGACCTCTTTTCAAGTCCTCATGTTGCACCCCTCCTA
190 GTTTGGGCTAGAGTAGTACTAGGATGGGTGACCTC-CTGGAAGTCCTCGTGTTGCACCCCTCCCA
* *
820 TTTTATTTCCGATAAATTTTTTTTAGTTGCATTTTCTCTACGTGGTGTAACTAATTCGTTATTTG
254 TTTTATTTCC-ATAAATTTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTAATTCATTATTTG
* * * *
885 CGTTTTGTGAAATAAATAATTTGAAACGTTATTTGGTAGAATTTACATTCAAATTCAAGGCAAAA
318 CGTTTTGTGAAATAAATAATTTGAAACGTTATTCGGTAGAATTTGCATTCAAATTCGAGGCGAAA
* *
950 GTGCGATAAGGGGCGGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGAGATCATACTAG
383 GTGCGATAAGGGGCAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATAC-AG
* * * * * *
1015 TACTAATACACCAGAT-TCCATTAAAACTCTGCAGTTAAGCGTGTCCCT-CCCA-ATTTATTTC-
447 CACAAATACACCAGATCT-CATTAAAACTCCGCAATTAAGCGTG--CCTGCCCAGA-TTAGTACT
* * *** * *
1076 ATAT-A-ATTTTTTTTAGT-TGCAT-TT-TCTTCACAAGGTG
508 AGATGACATCTTTGGAAGTCT-CATGTTCCCTTCACAAGGTA
*
1113 TAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAATCGAAATTTGGTCGAATTTGCA
1 TAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGAAATTTGGTCGAATTTGCA
*
1178 TTAAAATTCGAGGCGAAAGTCCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGA
66 TTAAAATTCGAGGCGAAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGA
* *
1243 CGGGTGTGATCATACCAGCACTAATGCACCGAATCCCAGCAGAACTCCGAAGTTAAGCGTGTTTG
131 CGGGTGCGATCATACCAGCACTAATGCACCGAATCCCATCAGAACTCCGAA-TTAAGCGTGTTTG
* *
1308 GGCGAGAGTAGTACTAGGATGGGTGACCTCCTAGGAAGTCCTCGTGTTGCACCGCTCCCATTTTA
195 GGCTAGAGTAGTACTAGGATGGGTGACCTCCT-GGAAGTCCTCGTGTTGCACCCCTCCCATTTTA
* * *
1373 TTTCATATAAAGTTTTTTTAGTTGCAATTTCTCCACGTGGTGTAACTAATTCATTATTTGCGTTT
259 TTTC-CATAAATTTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTAATTCATTATTTGCGTTT
* * * * *
1438 TGCGAAATAAGTAATTTGAAAAGTTATTCGGTTGAATTTGCATTCAAATTCGAGGCGAAAGGGCG
323 TGTGAAATAAATAATTTGAAACGTTATTCGGTAGAATTTGCATTCAAATTCGAGGCGAAAGTGCG
**
1503 ATAAGGGGCAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATAACAGCATTA
388 ATAAGGGGCAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCAT-ACAGCACAA
* * * * * **
1568 ATGCACCGGATCTCATCAGAACTCTGCTGTTAAGCGTGC
452 ATACACCAGATCTCATTAAAACTCCGCAATTAAGCGTGC
1607 ATGGGCGAGA
Statistics
Matches: 862, Mismatches: 160, Indels: 61
0.80 0.15 0.06
Matches are distributed among these distances:
546 1 0.00
547 3 0.00
548 403 0.47
549 12 0.01
550 1 0.00
551 12 0.01
555 3 0.00
556 3 0.00
557 7 0.01
558 1 0.00
561 5 0.01
562 1 0.00
563 17 0.02
564 382 0.44
565 6 0.01
566 5 0.01
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.33
Consensus pattern (548 bp):
TAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGAAATTTGGTCGAATTTGCA
TTAAAATTCGAGGCGAAAGTGCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGA
CGGGTGCGATCATACCAGCACTAATGCACCGAATCCCATCAGAACTCCGAATTAAGCGTGTTTGG
GCTAGAGTAGTACTAGGATGGGTGACCTCCTGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATT
TCCATAAATTTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTAATTCATTATTTGCGTTTTGT
GAAATAAATAATTTGAAACGTTATTCGGTAGAATTTGCATTCAAATTCGAGGCGAAAGTGCGATA
AGGGGCAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACAGCACAAATAC
ACCAGATCTCATTAAAACTCCGCAATTAAGCGTGCCTGCCCAGATTAGTACTAGATGACATCTTT
GGAAGTCTCATGTTCCCTTCACAAGGTA
Found at i:1629 original size:302 final size:302
Alignment explanation
Indices: 1059--1699 Score: 924
Period size: 302 Copynumber: 2.1 Consensus size: 302
1049 TTAAGCGTGT
* * * * *
1059 CCCTCCCAATTTATTTCATAT-AATTTTTTTTAGTTGCATTTTCTTCACAAGGTGTAACTCATTC
1 CCCTCCCATTTTATTTCATATAAAGTTTTTTTAGTTGCAATTTCTCCACAAGGTGTAACTAATTC
* ** *
1123 GTTATTTGCGTTTTGCGAAATAAATAATTTGAATCGAAATTTGGTCGAATTTGCATTAAAATTCG
66 ATTATTTGCGTTTTGCGAAATAAATAATTTGAAAAGAAATTCGGTCGAATTTGCATTAAAATTCG
* * *
1188 AGGCGAAAGTCCGATAAGAGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGTGAT
131 AGGCGAAAGGCCGATAAGAGGCAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGAT
* **
1253 CATACCAGCACTAATGCACCGAATCCCAGCAGAACTCCGAAGTTAAGCGTGTTTGGGCGAGAGTA
196 CATAACAGCACTAATGCACCGAATCCCAGCAGAACTCCGAAGTTAAGCGTGCATGGGCGAGAGTA
*
1318 GTACTAGGATGGGTGACCTCCTAGGAAGTCCTCGTGTTGCAC
261 GTACTAGGATGGGTGACCTCCTAGGAAGTCCTCATGTTGCAC
* **
1360 CGCTCCCATTTTATTTCATATAAAGTTTTTTTAGTTGCAATTTCTCCACGTGGTGTAACTAATTC
1 CCCTCCCATTTTATTTCATATAAAGTTTTTTTAGTTGCAATTTCTCCACAAGGTGTAACTAATTC
* ** * *
1425 ATTATTTGCGTTTTGCGAAATAAGTAATTTGAAAAGTTATTCGGTTGAATTTGCATTCAAATTCG
66 ATTATTTGCGTTTTGCGAAATAAATAATTTGAAAAGAAATTCGGTCGAATTTGCATTAAAATTCG
* *
1490 AGGCGAAAGGGCGATAAGGGGCAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGAT
131 AGGCGAAAGGCCGATAAGAGGCAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGAT
* * * * * **
1555 CATAACAGCATTAATGCACCGGATCTCATCAGAACTCTGCTGTTAAGCGTGCATGGGCGAGAGTA
196 CATAACAGCACTAATGCACCGAATCCCAGCAGAACTCCGAAGTTAAGCGTGCATGGGCGAGAGTA
* * *
1620 GTACTAGGATGGGTGACCTCTTGGGAAGTTCTCATGTTGCAC
261 GTACTAGGATGGGTGACCTCCTAGGAAGTCCTCATGTTGCAC
* *
1662 CCCTCCCGTTTTATTTCATATAATGTTTTCTTTAGTTG
1 CCCTCCCATTTTATTTCATATAAAGTTTT-TTTAGTTG
1700 TGTGTACTAG
Statistics
Matches: 299, Mismatches: 39, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
301 19 0.06
302 272 0.91
303 8 0.03
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (302 bp):
CCCTCCCATTTTATTTCATATAAAGTTTTTTTAGTTGCAATTTCTCCACAAGGTGTAACTAATTC
ATTATTTGCGTTTTGCGAAATAAATAATTTGAAAAGAAATTCGGTCGAATTTGCATTAAAATTCG
AGGCGAAAGGCCGATAAGAGGCAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGAT
CATAACAGCACTAATGCACCGAATCCCAGCAGAACTCCGAAGTTAAGCGTGCATGGGCGAGAGTA
GTACTAGGATGGGTGACCTCCTAGGAAGTCCTCATGTTGCAC
Found at i:1759 original size:83 final size:81
Alignment explanation
Indices: 1620--1780 Score: 268
Period size: 83 Copynumber: 2.0 Consensus size: 81
1610 GGCGAGAGTA
* **
1620 GTACTAGGATGGGTGACCTCTTGGGAAGTTCTCATGTTGCACCCCTCCCGTTTTATTTCATATAA
1 GTACTAGGATGGGTGACCTCTTGGGAAGTCCTCATGTTGCACCCCTCCCAATTTATTTCATATAA
1685 TGTTTTCTTTAGTTGTGT
66 T-TTTT-TTTAGTTGTGT
*
1703 GTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTGTTGCACCCCTCCCAATTTATTTCATATAA
1 GTACTAGGATGGGTGACCTCTTGGGAAGTCCTCATGTTGCACCCCTCCCAATTTATTTCATATAA
1768 TTTTTTTTAGTTG
66 TTTTTTTTAGTTG
1781 CATTTTCTTC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
81 8 0.11
82 4 0.05
83 62 0.84
ACGTcount: A:0.18, C:0.20, G:0.21, T:0.41
Consensus pattern (81 bp):
GTACTAGGATGGGTGACCTCTTGGGAAGTCCTCATGTTGCACCCCTCCCAATTTATTTCATATAA
TTTTTTTTAGTTGTGT
Found at i:2040 original size:384 final size:384
Alignment explanation
Indices: 1318--2082 Score: 1129
Period size: 384 Copynumber: 2.0 Consensus size: 384
1308 GGCGAGAGTA
* *
1318 GTACTAGGATGGGTGACCTCCTAGGAAGTCCTCGTGTTGCACCGCTCCCATTTTATTTCATATAA
1 GTACTAGGATGGGTGACCTCCTAGGAAGTCCTCGTGTTGCACCCCTCCCAATTTATTTCATATAA
**
1383 AGTTTTTTTAGTTGCAATTTCTCCACGTGGTGTAACTAATTCATTATTTGCGTTTTGCGAAATAA
66 AGTTTTTTTAGTTGCAATTTCTCCACAAGGTGTAACTAATTCATTATTTGCGTTTTGCGAAATAA
* ** * * * *
1448 GTAATTTGAAAAGTTATTCGGTTGAATTTGCATTCAAATTCGAGGCGAAAGGGCGATAAGGGGCA
131 ATAATTTGAAAAGAAATTCGGTCGAATTTGCATTAAAATTCGAGGCGAAAGGCCAATAAGGGGCA
**
1513 GCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATAACAGCATTAATGCACCGGA
196 GCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATAACAGCACAAATGCACCGGA
* ** * * *
1578 TCTCATCAGAACTCTGCTGTTAAGCGTGCATGGGCGAGAGTAGTACTAGGATGGGTGACCTCTTG
261 TCTCATCAGAACTCCGCAATTAAGCGTCCATGGGCAACAGTAGTACTAGGATGGGTGACCTCTTG
* * *
1643 GGAAGTTCTCATGTTGCACCCCTCCCGTTTTATTTCATATAATGTTTTCTTTAGTTGTGT
326 GGAAGTCCTCATGTTGCACCCCTCCCATTTTATTTCATATAAAGTTTT-TTTAGTTGTGT
* *
1703 GTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTGTTGCACCCCTCCCAATTTATTTCATAT-A
1 GTACTAGGATGGGTGACCTCCTAGGAAGTCCTCGTGTTGCACCCCTCCCAATTTATTTCATATAA
* * * * *
1767 ATTTTTTTTAGTTGCATTTTCTTCACAAGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAA
66 AGTTTTTTTAGTTGCAATTTCTCCACAAGGTGTAACTAATTCATTATTTGCGTTTTGCGAAATAA
** * * *
1832 ATAATTTGAATCGAAATTTGGTCGAATTTGCATTAAAATTCGAGGCGAAAGTCCAATAAGGGTCA
131 ATAATTTGAAAAGAAATTCGGTCGAATTTGCATTAAAATTCGAGGCGAAAGGCCAATAAGGGGCA
1897 GCCTTTATA-ATAATAGATTGCGCAAGAGTTGACGGGTGCGATCATAACAGCACAAATGCACCGG
196 GCCTTTATATA-AATAGATTGCGCAAGAGTTGACGGGTGCGATCATAACAGCACAAATGCACCGG
* * * *
1961 ATCTCATTAGAACTCCGCAATTTAGCGTCCTTGGGCAACATTAGTACTAGGATGGGTGACCTCTT
260 ATCTCATCAGAACTCCGCAATTAAGCGTCCATGGGCAACAGTAGTACTAGGATGGGTGACCTCTT
* * *
2026 TGGAAGTCCTCATGTTGCACCCTTCCCATTTTATTTCTTATAAAGTTTTTTTAGTTG
325 GGGAAGTCCTCATGTTGCACCCCTCCCATTTTATTTCATATAAAGTTTTTTTAGTTG
2083 CAATTTCACC
Statistics
Matches: 338, Mismatches: 41, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
383 9 0.03
384 270 0.80
385 59 0.17
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (384 bp):
GTACTAGGATGGGTGACCTCCTAGGAAGTCCTCGTGTTGCACCCCTCCCAATTTATTTCATATAA
AGTTTTTTTAGTTGCAATTTCTCCACAAGGTGTAACTAATTCATTATTTGCGTTTTGCGAAATAA
ATAATTTGAAAAGAAATTCGGTCGAATTTGCATTAAAATTCGAGGCGAAAGGCCAATAAGGGGCA
GCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATAACAGCACAAATGCACCGGA
TCTCATCAGAACTCCGCAATTAAGCGTCCATGGGCAACAGTAGTACTAGGATGGGTGACCTCTTG
GGAAGTCCTCATGTTGCACCCCTCCCATTTTATTTCATATAAAGTTTTTTTAGTTGTGT
Found at i:2722 original size:300 final size:300
Alignment explanation
Indices: 2175--3439 Score: 1646
Period size: 300 Copynumber: 4.2 Consensus size: 300
2165 ATTCAAATTC
*
2175 TGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCACAGTTAAGCGTGCTTGGGCG
1 TGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCG
* * * *
2240 AGAGTTGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTGCTGCACCCCTCCCATTTTATTTC
66 AGAGTAGTACTAGGATGGGTGACCTCCTAGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTC
* * * * *
2305 ATAT-AATTTTTTTAATTGCATTTTCTTCACATGGTGTAACTCATTCGTTATTTGCATTTTGCGA
131 ATATAAATTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTACGA
* * * * *
2369 AATAAATAATTTGAAATGATATTTGGTCGAATTTGAAATCAAATTCGAGGCGCAATTGTGATAAG
196 AATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTCAAATTCAAGGCGCAA-TGCGATAAG
* * *
2434 GGGCAACATTTATATGAATAGCTTGCACAAGAGTTGACGGG
260 GGGCAGCATTTATATAAATAGATTGCACAAGAGTTGACGGG
* ** * *
2475 TGCGATCATACTAGCACTAACACATCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCCTGGGCG
1 TGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCG
* * * *
2540 AGAGTAATACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGC-TCCC-CCTATTTTATTTC
66 AGAGTAGTACTAGGATGGGTGACCTCCTAGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTC
*
2603 ATATAATATTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTATACG
131 ATATAA-ATTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTACG
* * *
2668 AAATAAATAATATGAAACGAAATTTGGTCGAATTTGCATTCAAATTCAAGGCGCAACGACGATAA
195 AAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTCAAATTCAAGGCGCAATG-CGATAA
* * * * *
2733 GAGGCAGCTTTTATATGAATAGATTGCGCAAGGGTTGACGGG
259 GGGGCAGCATTTATATAAATAGATTGCACAAGAGTTGACGGG
* * * *
2775 TGCGATCATACCAGCACTAATGCACCGAATCCCATCAAAACTCCGTAGTTAAGCGTGTTTGGGCG
1 TGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCG
* * * *
2840 AGAGTAGTACTAGGATGGGTGACCTCCTAAGAAGTACTTGCGTTGCACCCCTCCCATTTTATTTC
66 AGAGTAGTACTAGGATGGGTGACCTCCTAGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTC
* * *
2905 ATATAATATTTTTTCAGTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTATTCGCGTTTGTA-
131 ATATAA-ATTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTT-TAC
* * * * *
2969 -AAATTAATCATTTGAAACGATATTCGGTCGAATTTGCATTAAAATTCGAGGCGCAAGTGC-AGT
194 GAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTCAAATTCAAGGCGCAA-TGCGA-T
** * * *
3032 AAGGATCAGCCTTTATATAAATAGATTGCGCAAAAGTTGACGGG
257 AAGGGGCAGCATTTATATAAATAGATTGCACAAGAGTTGACGGG
* * * * * * *
3076 TGCAATCATACCAGCACAAATGCACCGGATCTCATTAGCACTCCGCAATTTAGCGTGCTTGGGCG
1 TGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCG
* *
3141 AGAGTAGTACTAGGATGGGTGACCTTCTAGGAAGTCCTCGTGTTGCACCCCTCCCACTTTATTTC
66 AGAGTAGTACTAGGATGGGTGACCTCCTAGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTC
* *
3206 TTATAAAGTTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACT-ATTTCGTTATTTGCGTTTTGC
131 ATATAAA-TTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCA-TTCGTTATTTGCGTTTTAC
* * * * **
3270 GAAATAAATAATTTGAAACGTTATTTGCTAGATTTTGCATTCAAATTCAAGGCAAAAGTGCGATA
194 GAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTCAAATTCAAGGCGCAA-TGCGATA
* *
3335 AGGGGCGGCCA-TTATATAAATAAATTGCACAAGAGTTGACGGG
258 AGGGGCAG-CATTTATATAAATAGATTGCACAAGAGTTGACGGG
* * * * *
3378 TGCGATCATACTAGTACTAATACACCGAATTCCATCAGAACTCCGCAGTTAAGCGTGCTTGG
1 TGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGG
3440 TCAAATTTGG
Statistics
Matches: 831, Mismatches: 120, Indels: 26
0.85 0.12 0.03
Matches are distributed among these distances:
298 16 0.02
299 5 0.01
300 344 0.41
301 257 0.31
302 205 0.25
303 4 0.00
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (300 bp):
TGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCG
AGAGTAGTACTAGGATGGGTGACCTCCTAGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTC
ATATAAATTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTACGA
AATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTCAAATTCAAGGCGCAATGCGATAAGG
GGCAGCATTTATATAAATAGATTGCACAAGAGTTGACGGG
Found at i:3386 original size:603 final size:599
Alignment explanation
Indices: 2175--3439 Score: 1703
Period size: 603 Copynumber: 2.1 Consensus size: 599
2165 ATTCAAATTC
* *
2175 TGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCACAGTTAAGCGTGCTTGGGCG
1 TGCGATCATACCAGCACTAATGCACCGAATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCG
* * ** * *
2240 AGAGTTGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTGCTGCACCCCTCCCATTTTATTTC
66 AGAGTAGTACTAGGATGGGTGACCTCCTAAGAAGTACTCGCGCTGCACCCCTCCCATTTTATTTC
* * * *
2305 ATATAATTTTTTTAATTGCATTTTCTTCACATGGTGTAACTCATTCGTTATTTGCATTTTGCGAA
131 ATATAATTTTTTTAATTGCATTTTCTCCACATGGTGTAACTCATTCGTTATTCGCAGTTTGCAAA
* * *
2370 ATAAATAATTTGAAATGATATTTGGTCGAATTTGAAATCAAATTCGAGGCGCAATTGTGATAAGG
196 ATAAATAATTTGAAACGATATTCGGTCGAATTTGAAATAAAATTCGAGGCGCAA-TGTGATAAGG
* * * * * * * *
2435 GGCAACATTTATATGAATAGCTTGCACAAGAGTTGACGGGTGCGATCATACTAGCACTAACACAT
260 AGCAACATTTATATAAATAGATTGCACAAAAGTTGACGGGTGCAATCATACCAGCACAAACACAC
*
2500 CGGATCCCATCAGAACTCCGCAGTTAAGCGTGCCTGGGCGAGAGTAATACTAGGATGGGTGACCT
325 CGGATCCCATCAGAACTCCGCAATTAAGCGTGCCTGGGCGAGAGTAATACTAGGATGGGTGACCT
* * * *
2565 CCTGGGAAGTCCTCGTGTTGCTCCCCCTATTTTATTTCATATAATATTTTTTTAGTTGCATTTTC
390 CCTAGGAAGTCCTCGTGTTGCCCCCCCCACTTTATTTCATATAATATTTTTTTAGTTGCATTTTC
*
2630 TCCACGTGGTGTAACTCATTCGTTATTTGCGTTATACGAAATAAATAATATGAAACGAAATTTGG
455 TCCACGTGGTGTAACTCATTCGTTATTTGCGTTATACGAAATAAATAATATGAAACGAAATTTGC
* * * ** * *
2695 TCGAATTTGCATTCAAATTCAAGGCGCAACGACGATAAGAGGCAGCTTTTATATGAATAGATTGC
520 TAGAATTTGCATTCAAATTCAAGGCGAAAAGACGATAAGAGGCAGCCATTATATAAATAAATTGC
* *
2760 GCAAGGGTTGACGGG
585 ACAAGAGTTGACGGG
* * *
2775 TGCGATCATACCAGCACTAATGCACCGAATCCCATCAAAACTCCGTAGTTAAGCGTGTTTGGGCG
1 TGCGATCATACCAGCACTAATGCACCGAATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCG
* *
2840 AGAGTAGTACTAGGATGGGTGACCTCCTAAGAAGTACTTGCGTTGCACCCCTCCCATTTTATTTC
66 AGAGTAGTACTAGGATGGGTGACCTCCTAAGAAGTACTCGCGCTGCACCCCTCCCATTTTATTTC
* * * *
2905 ATATAATATTTTTTCAGTTGCGTTTTCTCCACGTGGTGTAACTCATTCGTTATTCGC-GTTTGTA
131 ATATAAT-TTTTTT-AATTGCATTTTCTCCACATGGTGTAACTCATTCGTTATTCGCAGTTTGCA
* * * *
2969 AAATTAATCATTTGAAACGATATTCGGTCGAATTTGCATTAAAATTCGAGGCGCAA-GTGCAGTA
194 AAATAAATAATTTGAAACGATATTCGGTCGAATTTGAAATAAAATTCGAGGCGCAATGTG-A-TA
* * * * **
3033 AGGATCAGCCTTTATATAAATAGATTGCGCAAAAGTTGACGGGTGCAATCATACCAGCACAAATG
257 AGGAGCAACATTTATATAAATAGATTGCACAAAAGTTGACGGGTGCAATCATACCAGCACAAACA
* * * * * *
3098 CACCGGATCTCATTAGCACTCCGCAATTTAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGA
322 CACCGGATCCCATCAGAACTCCGCAATTAAGCGTGCCTGGGCGAGAGTAATACTAGGATGGGTGA
* *
3163 CCTTCTAGGAAGTCCTCGTGTTGCACCCCTCCCACTTTATTTCTTATAA-AGTTTTTTTAGTTGC
387 CCTCCTAGGAAGTCCTCGTGTTGC-CCCC-CCCACTTTATTTCATATAATA-TTTTTTTAGTTGC
* * * *
3227 ATTTTCTCCACGTGGTGTAACT-ATTTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGT
449 ATTTTCTCCACGTGGTGTAACTCA-TTCGTTATTTGCGTTATACGAAATAAATAATATGAAACGA
* * * * *
3291 TATTTGCTAGATTTTGCATTCAAATTCAAGGC-AAAAGTGCGATAAGGGGCGGCCATTATATAAA
513 AATTTGCTAGAATTTGCATTCAAATTCAAGGCGAAAAG-ACGATAAGAGGCAGCCATTATATAAA
3355 TAAATTGCACAAGAGTTGACGGG
577 TAAATTGCACAAGAGTTGACGGG
* * * *
3378 TGCGATCATACTAGTACTAATACACCGAATTCCATCAGAACTCCGCAGTTAAGCGTGCTTGG
1 TGCGATCATACCAGCACTAATGCACCGAATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGG
3440 TCAAATTTGG
Statistics
Matches: 575, Mismatches: 81, Indels: 15
0.86 0.12 0.02
Matches are distributed among these distances:
599 3 0.01
600 125 0.22
601 192 0.33
602 45 0.08
603 210 0.37
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (599 bp):
TGCGATCATACCAGCACTAATGCACCGAATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCG
AGAGTAGTACTAGGATGGGTGACCTCCTAAGAAGTACTCGCGCTGCACCCCTCCCATTTTATTTC
ATATAATTTTTTTAATTGCATTTTCTCCACATGGTGTAACTCATTCGTTATTCGCAGTTTGCAAA
ATAAATAATTTGAAACGATATTCGGTCGAATTTGAAATAAAATTCGAGGCGCAATGTGATAAGGA
GCAACATTTATATAAATAGATTGCACAAAAGTTGACGGGTGCAATCATACCAGCACAAACACACC
GGATCCCATCAGAACTCCGCAATTAAGCGTGCCTGGGCGAGAGTAATACTAGGATGGGTGACCTC
CTAGGAAGTCCTCGTGTTGCCCCCCCCACTTTATTTCATATAATATTTTTTTAGTTGCATTTTCT
CCACGTGGTGTAACTCATTCGTTATTTGCGTTATACGAAATAAATAATATGAAACGAAATTTGCT
AGAATTTGCATTCAAATTCAAGGCGAAAAGACGATAAGAGGCAGCCATTATATAAATAAATTGCA
CAAGAGTTGACGGG
Found at i:3467 original size:12 final size:12
Alignment explanation
Indices: 3450--3524 Score: 86
Period size: 12 Copynumber: 6.6 Consensus size: 12
3440 TCAAATTTGG
3450 TCAAATTTACAT
1 TCAAATTTACAT
3462 TCAAATTTACAT
1 TCAAATTTACAT
**
3474 TCAAATTT--GG
1 TCAAATTTACAT
3484 TCAAATTTACAT
1 TCAAATTTACAT
**
3496 TCAAATTT--GG
1 TCAAATTTACAT
3506 TCAAATTTACAT
1 TCAAATTTACAT
3518 TCAAATT
1 TCAAATT
3525 CGCGGTGCAA
Statistics
Matches: 51, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
10 16 0.31
12 35 0.69
ACGTcount: A:0.39, C:0.15, G:0.05, T:0.41
Consensus pattern (12 bp):
TCAAATTTACAT
Found at i:3487 original size:22 final size:22
Alignment explanation
Indices: 3462--3524 Score: 126
Period size: 22 Copynumber: 2.9 Consensus size: 22
3452 AAATTTACAT
3462 TCAAATTTACATTCAAATTTGG
1 TCAAATTTACATTCAAATTTGG
3484 TCAAATTTACATTCAAATTTGG
1 TCAAATTTACATTCAAATTTGG
3506 TCAAATTTACATTCAAATT
1 TCAAATTTACATTCAAATT
3525 CGCGGTGCAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 41 1.00
ACGTcount: A:0.38, C:0.14, G:0.06, T:0.41
Consensus pattern (22 bp):
TCAAATTTACATTCAAATTTGG
Found at i:4170 original size:302 final size:302
Alignment explanation
Indices: 3500--4993 Score: 1972
Period size: 302 Copynumber: 4.9 Consensus size: 302
3490 TTACATTCAA
* * * * * * * *
3500 ATTTGGTCAAATTTACATTCAAATTCGCGGTGCAAGGGCAATAAGGGGTAGCCTTTATATAAATA
1 ATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATA
* * * * * * * *
3565 GATTGCGCAAAAGTTGAAGCGTGCGATCATACCAGCACTAATGCACCGGATCCTATTAAAACTTC
66 GATTGCGCAAGAGTTGACGGGTGCGATCATACTAGCACTAATGCATCGGATCCCATCAAAACTCC
* * * *
3630 GTAGTTAAGCGTGTTTGCGCGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTGTT
131 GCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTT
* * * * *
3695 GCACCCCTCGCATTTTATTTCAGATAATATTTTTTTTAGTTTCATTTTCTTCACGTAGTGTAACT
196 GCACCCCTCCCATTTTATTTCATATAATA-TTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACT
* * *
3760 CATTTGTTATTTGCGTTTTGCGAAATAAGTAATTTGAAACGAT
260 CATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACAAT
* * * * *
3803 ATTTGGTCTAATTTGCATTCAAATTCAAGGCGCAATTGCGATAAGCGGCAACCTTTATATGAATA
1 ATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATA
* * * *
3868 GATTGCACAAGAGTTGACGGGTGCGATTATACTAGCACTAATGCATCGGATACCACCAAAACTCC
66 GATTGCGCAAGAGTTGACGGGTGCGATCATACTAGCACTAATGCATCGGATCCCATCAAAACTCC
* * *
3933 GCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATAGGTCACCTCCTGAGAAGTCCTCGTGTT
131 GCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTT
* * *
3998 GCACCCCTCCTATTTTATTTCATATAATGTTTTTTTAGTTGCAATTTCTCCACGTGGTGTAACTC
196 GCACCCCTCCCATTTTATTTCATATAATATTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTC
* * * *
4063 ATTCCTTATTTGCGTTATGCAAAATAAATAATTTGGAACAAT
261 ATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACAAT
4105 ATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATA
1 ATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATA
* * * * * *
4170 GATTGCGCAAGAATTGACGGGTGCGATCATACCAGTACTAATGCACCGGATCCCATTAGAACTCC
66 GATTGCGCAAGAGTTGACGGGTGCGATCATACTAGCACTAATGCATCGGATCCCATCAAAACTCC
** * *
4235 GTTGTTAAGTGTGCTTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTGT
131 GCAGTTAAGCGTGC-TTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGT
* *
4300 TGCACCCCTCCCATTTTATTTCATATATTATTTTTTTAGTTGCATTTTCTCCACATGGTGTAACT
195 TGCACCCCTCCCATTTTATTTCATATAATATTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACT
4365 CATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACAAT
260 CATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACAAT
* ** ** *
4408 ATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAACTGCGATAAAAGGTTGCCTTTATATGAATT
1 ATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATA
* * *
4473 GATTGCGCAAGAGTTTACGGGTGCGATCATA-TCAGCACTAATGCATCGGATCCCATCTAAACTA
66 GATTGCGCAAGAGTTGACGGGTGCGATCATACT-AGCACTAATGCATCGGATCCCATCAAAACTC
* * *
4537 CGCAGTAAAGCGTGCTTGGGCGAGAGTTGTACTAGGATGGGTGACCTCCTGGGAAGTCTTCGTGT
130 CGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGT
*** *
4602 TGCACCCCTTGTATTTTATTTCATATAATATTTATTTT-GTTGCATTTTCTCCAC-TAAGTGTAA
195 TGCACCCCTCCCATTTTATTTCATATAATATTT-TTTTAGTTGCATTTTCTCCACGT-GGTGTAA
* * * *
4665 CTCATTCGTTATTTGCGTTTTGCTAAATAAGTCATTTGAAACGAT
258 CTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACAAT
* * * * * * *
4710 ATTTGGTCGACTTTCCATTCAAATTCAAGGCGCAATTGCGATAAGGGGCAACATTTATATGAGTA
1 ATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATA
* * * *
4775 GATTCCACAAGAGTTGACGGGTGCGATCA-ATCTTA-CACTAATGCATTGGGTCCCATCAAAACT
66 GATTGCGCAAGAGTTGACGGGTGCGATCATA-C-TAGCACTAATGCATCGGATCCCATCAAAACT
* * * * *
4838 CCGCAATTAAGCGCGCTTGGGCGAGAGTAGTACTAGGATGGGTGATCTCCTTGGAAGTCCTTGTG
129 CCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTG
* * * *
4903 TTACACACCTCCCATTTTATTTCGTATAATGTTTTTTTTTAGTTGCATTTTCTCCACGTGGTGTA
194 TTGCACCCCTCCCATTTTATTTCATATAA--TATTTTTTTAGTTGCATTTTCTCCACGTGGTGTA
*
4968 ACTCATTCGTTATTTACGTTTTGCGA
257 ACTCATTCGTTATTTGCGTTTTGCGA
4994 TGCACCGGAT
Statistics
Matches: 1035, Mismatches: 145, Indels: 21
0.86 0.12 0.02
Matches are distributed among these distances:
301 2 0.00
302 515 0.50
303 467 0.45
304 50 0.05
305 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (302 bp):
ATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATA
GATTGCGCAAGAGTTGACGGGTGCGATCATACTAGCACTAATGCATCGGATCCCATCAAAACTCC
GCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTT
GCACCCCTCCCATTTTATTTCATATAATATTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTC
ATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACAAT
Found at i:4653 original size:605 final size:605
Alignment explanation
Indices: 3500--4993 Score: 2061
Period size: 605 Copynumber: 2.5 Consensus size: 605
3490 TTACATTCAA
* * * * * * *
3500 ATTTGGTCAAATTTACATTCAAATTCGCGGTGCAAGGGCAATAAGGGGTAGCCTTTATATAAATA
1 ATTTGGTCGAATTTACATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATA
* * * *
3565 GATTGCGCAA-AAGTTGAAGCGTGCGATCATACCAGCACTAATGCACCGGATCCTATTAAAACTT
66 GATTGCGCAAGAA-TTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATTAAAACTC
*
3629 CGTAGTTAAGCGTG-TTTGCGCGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTG
130 CGTAGTTAAGCGTGCTTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTG
* * * * * *
3693 TTGCACCCCTCGCATTTTATTTCAGATAATATTTTTTTTAGTTTCATTTTCTTCACGTAGTGTAA
195 TTGCACCCCTCCCATTTTATTTCATATATTA-TTTTTTTAGTTGCATTTTCTCCACGTGGTGTAA
* * * *
3758 CTCATTTGTTATTTGCGTTTTGCGAAATAAGTAATTTGAAACGATATTTGGTCTAATTTGCATTC
259 CTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACAATATTTGGTCGAATTTGCATTC
* **
3823 AAATTCAAGGCGCAATTGCGATAAGCGGCAACCTTTATATGAATAGATTGCACAAGAGTTGACGG
324 AAATTCAAGGCGCAACTGCGATAAAAGGCAACCTTTATATGAATAGATTGCACAAGAGTTGACGG
* * *
3888 GTGCGATTATACTAGCACTAATGCATCGGATACCACCAAAACTCCGCAGTTAAGCGTGCTTGGGC
389 GTGCGATCATACTAGCACTAATGCATCGGATACCACCAAAACTACGCAGTAAAGCGTGCTTGGGC
3953 GAGAGTAGTACTAGGATAGGTCACCTCCTGAGAAGTCCTCGTGTTGCACCCCTCCTATTTTATTT
454 GAGAGTAGTACTAGGATAGGTCACCTCCTGAGAAGTCCTCGTGTTGCACCCCTCCTATTTTATTT
* *
4018 CATATAATGTTTTTTTAGTTGCAATTTCTCCACGT-GGTGTAACTCATTCCTTATTTGCGTTATG
519 CATATAATATTTTTTTAGTTGCAATTTCTCCAC-TAAGTGTAACTCATTCCTTATTTGCGTTATG
*
4082 CAAAATAAATAATTTGGAACAAT
583 CAAAATAAATAATTTGAAACAAT
*
4105 ATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATA
1 ATTTGGTCGAATTTACATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATA
* *
4170 GATTGCGCAAGAATTGACGGGTGCGATCATACCAGTACTAATGCACCGGATCCCATTAGAACTCC
66 GATTGCGCAAGAATTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATTAAAACTCC
* *
4235 GTTGTTAAGTGTGCTTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTGT
131 GTAGTTAAGCGTGCTTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTGT
*
4300 TGCACCCCTCCCATTTTATTTCATATATTATTTTTTTAGTTGCATTTTCTCCACATGGTGTAACT
196 TGCACCCCTCCCATTTTATTTCATATATTATTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACT
4365 CATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACAATATTTGGTCGAATTTGCATTCAA
261 CATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACAATATTTGGTCGAATTTGCATTCAA
* *** * * *
4430 ATTCGAGGCGCAACTGCGATAAAAGGTTGCCTTTATATGAATTGATTGCGCAAGAGTTTACGGGT
326 ATTCAAGGCGCAACTGCGATAAAAGGCAACCTTTATATGAATAGATTGCACAAGAGTTGACGGGT
* * *
4495 GCGATCATA-TCAGCACTAATGCATCGGATCCCATCTAAACTACGCAGTAAAGCGTGCTTGGGCG
391 GCGATCATACT-AGCACTAATGCATCGGATACCACCAAAACTACGCAGTAAAGCGTGCTTGGGCG
* * * * * **
4559 AGAGTTGTACTAGGATGGGTGACCTCCTGGGAAGTCTTCGTGTTGCACCCCTTGTATTTTATTTC
455 AGAGTAGTACTAGGATAGGTCACCTCCTGAGAAGTCCTCGTGTTGCACCCCTCCTATTTTATTTC
* * *
4624 ATATAATATTTATTTT-GTTGCATTTTCTCCACTAAGTGTAACTCATTCGTTATTTGCGTTTTGC
520 ATATAATATTT-TTTTAGTTGCAATTTCTCCACTAAGTGTAACTCATTCCTTATTTGCGTTATGC
* * * *
4688 TAAATAAGTCATTTGAAACGAT
584 AAAATAAATAATTTGAAACAAT
* * * * * * *
4710 ATTTGGTCGACTTTCCATTCAAATTCAAGGCGCAATTGCGATAAGGGGCAACATTTATATGAGTA
1 ATTTGGTCGAATTTACATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATA
* * * * ** * *
4775 GATTCCACAAGAGTTGACGGGTGCGATCA-ATCTTA-CACTAATGCATTGGGTCCCATCAAAACT
66 GATTGCGCAAGAATTGACGGGTGCGATCATA-C-CAGCACTAATGCACCGGATCCCATTAAAACT
* * * * *
4838 CCGCAATTAAGCGCGC-TTGGGCGAGAGTAGTACTAGGATGGGTGATCTCCTT-GGAAGTCCTTG
129 CCGTAGTTAAGCGTGCTTTGGGCGAGAGTAGTACTAGGATGGGTGACCT-CTTGGGAAGTCCTCG
* * * *
4901 TGTTACACACCTCCCATTTTATTTCGTATAATGTTTTTTTTTAGTTGCATTTTCTCCACGTGGTG
193 TGTTGCACCCCTCCCATTTTATTTCATAT-AT-TATTTTTTTAGTTGCATTTTCTCCACGTGGTG
*
4966 TAACTCATTCGTTATTTACGTTTTGCGA
256 TAACTCATTCGTTATTTGCGTTTTGCGA
4994 TGCACCGGAT
Statistics
Matches: 788, Mismatches: 91, Indels: 19
0.88 0.10 0.02
Matches are distributed among these distances:
604 70 0.09
605 577 0.73
606 141 0.18
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (605 bp):
ATTTGGTCGAATTTACATTCAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATA
GATTGCGCAAGAATTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATTAAAACTCC
GTAGTTAAGCGTGCTTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTGT
TGCACCCCTCCCATTTTATTTCATATATTATTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACT
CATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACAATATTTGGTCGAATTTGCATTCAA
ATTCAAGGCGCAACTGCGATAAAAGGCAACCTTTATATGAATAGATTGCACAAGAGTTGACGGGT
GCGATCATACTAGCACTAATGCATCGGATACCACCAAAACTACGCAGTAAAGCGTGCTTGGGCGA
GAGTAGTACTAGGATAGGTCACCTCCTGAGAAGTCCTCGTGTTGCACCCCTCCTATTTTATTTCA
TATAATATTTTTTTAGTTGCAATTTCTCCACTAAGTGTAACTCATTCCTTATTTGCGTTATGCAA
AATAAATAATTTGAAACAAT
Found at i:5420 original size:480 final size:478
Alignment explanation
Indices: 4544--5467 Score: 1273
Period size: 480 Copynumber: 1.9 Consensus size: 478
4534 CTACGCAGTA
* *
4544 AAGCGTGCTTGGGCGAGAGTTGTACTAGGATGGGTGACCTCCTGGGAAGTCTTCGTGTTGCACCC
1 AAGCGTGCTTGGGCGAGAGTTGTACTAGGATGAGTGACCTCCTGGGAAGTCCTCGTGTTGCACCC
*** *
4609 CTTGTATTTTATTTCATATAATATTTATTTTGTTGCATTTTCTCCACTAAGTGTAACTCATTCGT
66 CTCCCATTTTATTTCATATAATATTTATTTTGTTGCATTTTCTCCACTAAGTGCAACTCATTCGT
* ** * * *
4674 TATTTGCGTTTTGCTAAATAAGTCATTTGAAACGATATTTGGTCGACTTTCCATTCAAATTCAAG
131 TATTTACGTTTTGAGAAATAAGTAATTTGAAACGATATTTGGTCGAATTTCCATTAAAATTCAAG
* * * *
4739 GCGCAATTGCGATAAGGGGCAACATTTATATGAGTAGATTCCACAAGAGTTGACGGGTGCGATCA
196 GCGCAAGTGCGATAAGGGGCAACATTTATATAAATAGATTCCACAAAAGTTGACGGGTGCGATCA
* * *** *
4804 ATCTTACACTAATGCATTGGGTCCCATCAAAACTCCGCAATTAAGCGCGCTTGGGCGAGAGTAGT
261 ATCTCACACAAATGCACCCGATCCCATCAAAACTCCGCAATTAAGCGCGCTTGGGCGAGAGTAGT
* ** *
4869 ACTAGGATGGGTGATCTCCTTGGAAGTCCTTGTGTTACACACCTCCCATTTTATTTCGTATAATG
326 ACTAGGATGGGTGACCTCCTTGGAAGTCCTCATGTTACACACCTCCCATTTTATTTCGTATAAAG
*
4934 TTTTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTACGTTTTGCGATGCAC
391 --TTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTAATTCGTTATTTACGTTTTGCGATGCAC
4999 CGGATCCCATCAGGACTCTGCTGTT
454 CGGATCCCATCAGGACTCTGCTGTT
* *
5024 AAGCGTGCTTGGGTGAGAGTTGTACTAGGATGAGTGACCTCCTGGGATGTCCTCGTGTTGCACCC
1 AAGCGTGCTTGGGCGAGAGTTGTACTAGGATGAGTGACCTCCTGGGAAGTCCTCGTGTTGCACCC
* *
5089 CTCCCATTTTATTTCATATAATATTT-TTTTAGTTGCGTTTTCTCCACGT-GGTGCAACTCATTC
66 CTCCCATTTTATTTCATATAATATTTATTTT-GTTGCATTTTCTCCAC-TAAGTGCAACTCATTC
*
5152 GTTATTTACGTTTTGAGAAATTAA-TAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTC
129 GTTATTTACGTTTTGAGAAA-TAAGTAATTTGAAACGATATTTGGTCGAATTTCCATTAAAATTC
* * * * ***
5216 GAGGCGCAAGTGCGATAAGGGTCAGCCTTTATATAAATAGATTGGGCAAAAGTTGACGGGTGCGA
193 AAGGCGCAAGTGCGATAAGGGGCAACATTTATATAAATAGATTCCACAAAAGTTGACGGGTGCGA
* * * * *
5281 TC-ATAC-CAGCACAAATGCACCCGATCTCATTAGAACTCCGCAATTTAGCGTGCTTGGGCGAGA
258 TCAAT-CTCA-CACAAATGCACCCGATCCCATCAAAACTCCGCAATTAAGCGCGCTTGGGCGAGA
* ** * * *
5344 TTAGTACTAGGATGGGTGACCTTTTTGGAAGTCCTCATGTTGCACCCCTCCCATTTTATTTCTTA
321 GTAGTACTAGGATGGGTGACCTCCTTGGAAGTCCTCATGTTACACACCTCCCATTTTATTTCGTA
* * *
5409 TAAAGTTTTTTTAGTTGCATTTTCTCCACGTGGTGTAGCTAATTCGTTTTTTGCGTTTT
386 TAAAGTTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTAATTCGTTATTTACGTTTT
5468 CCAAAATAAA
Statistics
Matches: 386, Mismatches: 53, Indels: 12
0.86 0.12 0.03
Matches are distributed among these distances:
478 50 0.13
479 7 0.02
480 325 0.84
481 4 0.01
ACGTcount: A:0.23, C:0.19, G:0.22, T:0.36
Consensus pattern (478 bp):
AAGCGTGCTTGGGCGAGAGTTGTACTAGGATGAGTGACCTCCTGGGAAGTCCTCGTGTTGCACCC
CTCCCATTTTATTTCATATAATATTTATTTTGTTGCATTTTCTCCACTAAGTGCAACTCATTCGT
TATTTACGTTTTGAGAAATAAGTAATTTGAAACGATATTTGGTCGAATTTCCATTAAAATTCAAG
GCGCAAGTGCGATAAGGGGCAACATTTATATAAATAGATTCCACAAAAGTTGACGGGTGCGATCA
ATCTCACACAAATGCACCCGATCCCATCAAAACTCCGCAATTAAGCGCGCTTGGGCGAGAGTAGT
ACTAGGATGGGTGACCTCCTTGGAAGTCCTCATGTTACACACCTCCCATTTTATTTCGTATAAAG
TTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTAATTCGTTATTTACGTTTTGCGATGCACCG
GATCCCATCAGGACTCTGCTGTT
Found at i:5550 original size:302 final size:300
Alignment explanation
Indices: 5022--5895 Score: 1160
Period size: 302 Copynumber: 2.9 Consensus size: 300
5012 GACTCTGCTG
* * * *
5022 TTAAGCGTGCTTGGGTGAGAGTT-GTACTAGGATGAGTGACCTCCTGGGATGTCCTCGTGTTGCA
1 TTAAGCGTGCTTGGGCGAGA-TTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTGTTGCA
* * *
5086 CCCCTCCCATTTTATTTCATATAATATTTTTTTAGTTGCGTTTTCTCCACGTGGTGCAACTCATT
65 CCCCTCCCATTTTATTTCATATAA-ATTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTAATT
* * * * *
5151 CGTTATTTACGTTTTGAGAAATTAATAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTC
129 CGTTATTTGCGTTTTCA-AAATAAATAATTTGAAACGTTATTTGGTAGAATTTGCATTAAAATTC
* * *
5216 GAGGCGCAAGTGCGATAA-GGGTCAGCCTTTATATAAATAGATTGGGCAAAAGTTGACGGGTGCG
193 GAGGCGAAAGTGCGATAAGGGGT-AGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCG
* * *
5280 ATCATACCAGCACAAATGCACCCGA-TCTCATTAGAACTCCGCAA
257 ATCATACCAGCACAAATACACCCGATTC-CATCAGAACACCGCAA
* * * *
5324 TTTAGCGTGCTTGGGCGAGATTAGTACTAGGATGGGTGACCTTTTTGGAAGTCCTCATGTTGCAC
1 TTAAGCGTGCTTGGGCGAGATTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTGTTGCAC
* *
5389 CCCTCCCATTTTATTTCTTATAAAGTTTTTTTAGTTGCATTTTCTCCACGTGGTGTAGCTAATTC
66 CCCTCCCATTTTATTTCATATAAA-TTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTAATTC
* * *
5454 GTTTTTTGCGTTTTCCAAAATAAATAATTTGAAACCTTATTTGGTAGAACTTGCATTAAAATTCG
130 GTTATTTGCGTTTT-CAAAATAAATAATTTGAAACGTTATTTGGTAGAATTTGCATTAAAATTCG
* * *
5519 AGGCAAAAGTGCGATAAGGGGTGGTCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGAT
194 AGGCGAAAGTGCGATAAGGGGTAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGAT
* * * * * *
5584 CATACTAGTACTAATACACCGGATTCCATCAGAACACCTCAG
259 CATACCAGCACAAATACACCCGATTCCATCAGAACACCGCAA
* * * * *
5626 TTAAGCGAGCTTGGGCGGGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCACGTGTGGCAC
1 TTAAGCGTGCTTGGGCGAGATTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTGTTGCAC
* * * * *
5691 CGCTCCCATTTTATTTCATATAAATTTTCTTAAGTTGCAATTTCTCTACGTGTTGTAACTAATTC
66 CCCTCCCATTTTATTTCATATAAATTTT-TTTAGTTGCATTTTCTCCACGTGGTGTAACTAATTC
* * * * * *
5756 GTTATATGCGTTTTGCGAAATAAATAATTTGAAAAGTTATTTGGTTGAATTTGCCTTCAAATTCG
130 GTTATTTGCGTTTT-CAAAATAAATAATTTGAAACGTTATTTGGTAGAATTTGCATTAAAATTCG
* *
5821 AGGCGAAAGGGCGATAAGGGGCAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGAT
194 AGGCGAAAGTGCGATAAGGGGTAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGAT
5886 CATACCAGCA
259 CATACCAGCA
5896 TTAATGCAAC
Statistics
Matches: 497, Mismatches: 69, Indels: 12
0.86 0.12 0.02
Matches are distributed among these distances:
301 7 0.01
302 483 0.97
303 7 0.01
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.33
Consensus pattern (300 bp):
TTAAGCGTGCTTGGGCGAGATTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTGTTGCAC
CCCTCCCATTTTATTTCATATAAATTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTAATTCG
TTATTTGCGTTTTCAAAATAAATAATTTGAAACGTTATTTGGTAGAATTTGCATTAAAATTCGAG
GCGAAAGTGCGATAAGGGGTAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCA
TACCAGCACAAATACACCCGATTCCATCAGAACACCGCAA
Found at i:6130 original size:266 final size:267
Alignment explanation
Indices: 5644--6161 Score: 770
Period size: 266 Copynumber: 1.9 Consensus size: 267
5634 GCTTGGGCGG
* *
5644 GAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCACGTGTGGCACCGCTCCCATTTTATTTCA
1 GAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCACGTGTGGCACCCCTCCCATTTTATTTCA
* *
5709 TATAAATTTTCTTAAGTTGCAATTTCTCTACGTGTTGTAACTAATTCGTTATATGCGTTTTGCGA
66 TATAAATTTTCTTAAGTTGCAATTTCTCTACGTGGTGTAACTAATTCGTTATATGCGTTTTCCGA
* ** * * *
5774 AATAAATAATTTGAAAAGTTATTTGGTTGAATTTGCCTTCAAATTCGAGGCGAAAGGGCGATAAG
131 AATAAATAATTTGAAAAGATATTTGGTCAAATTTGCATTAAAATTCAAGGCGAAAGGGCGATAAG
* * * *
5839 GGGCAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCATTAATGCA
196 AGGCAACCTATATATAAACAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCATTAATGCA
5904 ACAGCGA
261 ACAGCGA
* *
5911 GAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCA
1 GAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCACGTGTGGCACCCCTCCCATTTTATTTCA
* * * * * * *
5976 TA-CAATTTTTTTTAGTTGCATTTTCT-TCACGTGGTGTAGCTCATTCGTTATTTGCGTTTTCCG
66 TATAAATTTTCTTAAGTTGCAATTTCTCT-ACGTGGTGTAACTAATTCGTTATATGCGTTTTCCG
* * *
6039 AAATAAATAATTTGAAACGATATTTGGTCAAATTTGCATTAAAATTCAAGGCGCAAGTGCGATAA
130 AAATAAATAATTTGAAAAGATATTTGGTCAAATTTGCATTAAAATTCAAGGCGAAAGGGCGATAA
*
6104 GAGGCAACCTATATATGAACAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCA
195 GAGGCAACCTATATATAAACAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCA
6162 CTGATGCACC
Statistics
Matches: 223, Mismatches: 27, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
265 1 0.00
266 159 0.71
267 63 0.28
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (267 bp):
GAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCACGTGTGGCACCCCTCCCATTTTATTTCA
TATAAATTTTCTTAAGTTGCAATTTCTCTACGTGGTGTAACTAATTCGTTATATGCGTTTTCCGA
AATAAATAATTTGAAAAGATATTTGGTCAAATTTGCATTAAAATTCAAGGCGAAAGGGCGATAAG
AGGCAACCTATATATAAACAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCATTAATGCA
ACAGCGA
Found at i:6724 original size:581 final size:588
Alignment explanation
Indices: 4993--8439 Score: 2470
Period size: 581 Copynumber: 5.7 Consensus size: 588
4983 ACGTTTTGCG
* * *
4993 ATGCACCGGATCCCATCAGGACTCTGCTGTTAAGCGTGCTTGGGTGAGAGTTGTACTAGGATGAG
1 ATGCACCGGATCCCATCAGAACTCTGCTGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGAG
*
5058 TGACCTCCTGGGATGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATATTTTTTTAGTT
66 TGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATATTTTTTTAGTT
* * *
5123 GCGTTTTCTCCACGTGGTGC-AACTCATTCGTTATTTACGTTTTG-AGAAATTAATAATTTGAAA
131 GCATTTTCTCCACGTGGT-CTAACTCATTCGTTATTTGCGTTTTGCA-AAATAAATAATTTGAAA
* *
5186 CGATATTTGGTCGAATTTGCATTAAAATTCG-AGGCGCAAGTGCGATAAGGGTCAGCCTTTATAT
194 CGATATTTGGTCG-A--T--ATT---ATTCGCA--CG--A-TGCGATAGGGGACAGCCTTTATAT
* * * *
5250 AAATAGATTGGGCAAAAGTTGACGGGTGCGATCATACCAGCACAAATGCACCCGATCTCATTAGA
246 AAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCA-CCGATCT-ATCAGA
** * * ** *
5315 ACTCCGCAATTTAGCGTGCTTGGGCGAGATTAGTACTAGGATGGGTGACCTTTTTGGAAGTCCTC
309 ACTCCGCAGGTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTC
* * *
5380 ATGTTGCACCCCTCCCATTTTATTTCTTATA-AAGTTTTTTTAGTTGCATTTTCTCCACGTGGTG
374 GTGTTGCACCCCTCCCATTTTATTTC--ATACAATTTTTTTTAGTTGCATTTTCTTCACGTGGTG
* * ** * *
5444 TAGCTAATTCGTT-TTTTGCGTTTTCCAAAATAAATAATTTGAAACCTTATTTGGTAGAACTTGC
437 TAGCTCATTCGTTATTTT-CGTTTTCCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGC
** *** *
5508 ATTAAAATTCGAGGCAAAAGTGCGATAAGGGGTGGTCTTTATATAAATAGATTGCGCAAGAGTTG
501 ATTAAAATTCGAGGCGCAAGTGCGATAAGGGG-CAACTTTATATGAATAGATTGCGCAAGAGTTG
*
5573 ACGGGTGCGATCATACTAGTACTA
565 ACGGGTGCGATCATACTAGCACTA
* * * * * * *
5597 ATACACCGGATTCCATCAGAACACCT-CAGTTAAGCGAGCTTGGGCGGGAGTAGTACTAGGATGG
1 ATGCACCGGATCCCATCAGAAC-TCTGCTGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGA
* * * * *
5661 GTGACCTCTTGGGAAGTCCACGTGTGGCACCGCTCCCATTTTATTTCATATAA-ATTTTCTTAAG
65 GTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATATTTT-TTTAG
* * * * * * *
5725 TTGCAATTTCTCTACGTGTTGTAACTAATTCGTTATATGCGTTTTGCGAAATAAATAATTTGAAA
129 TTGCATTTTCTCCACGTGGTCTAACTCATTCGTTATTTGCGTTTTGCAAAATAAATAATTTGAAA
* * * * *
5790 AGTTATTTGGTTGAATTTGCCTTCAAATTCG-AGGCGAAAGGGCGATAAGGGG-CAGCCTTTATA
194 CGATATTTGGTCG-A--T--ATT---ATTCGCA--CG--A-TGCGAT-AGGGGACAGCCTTTATA
5853 TAAATAGATTGCGCAAGAGTTGACGGGTGCGATCAT---A-C-C--A-G---C-A--T-T---AA
245 TAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGATCTATCAGAA
*
5900 -T--GC----AA-----C---AGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCG
310 CTCCGCAGGTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCG
5950 TGTTGCACCCCTCCCATTTTATTTCATACAATTTTTTTTAGTTGCATTTTCTTCACGTGGTGTAG
375 TGTTGCACCCCTCCCATTTTATTTCATACAATTTTTTTTAGTTGCATTTTCTTCACGTGGTGTAG
* *
6015 CTCATTCGTTATTTGCGTTTTCCGAAATAAATAATTTGAAACGATATTTGGTCAAATTTGCATTA
440 CTCATTCGTTATTTTCGTTTTCCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTA
* * * *
6080 AAATTCAAGGCGCAAGTGCGATAAGAGGCAACCTATATATGAACAGATTGCGCAAGAGTTGACGG
505 AAATTCGAGGCGCAAGTGCGATAAGGGGCAA-CTTTATATGAATAGATTGCGCAAGAGTTGACGG
* *
6145 GTGCGATCATACCAGCACTG
569 GTGCGATCATACTAGCACTA
* * *
6165 ATGCACCGGATCCCATCAGGACTCTGCTGTTAAGCGTGCTTGGGTGAGAGTTGTACTAGGATGAG
1 ATGCACCGGATCCCATCAGAACTCTGCTGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGAG
* *
6230 TGACCTCCTGGGATGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATATATTTTTAGTT
66 TGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATATTTTTTTAGTT
* * *
6295 GCATTTTCTCCACCTGGTCTAACTCATTCGTTATTTGCGTTTTCCAAAATAAATAAGTTGAAACG
131 GCATTTTCTCCACGTGGTCTAACTCATTCGTTATTTGCGTTTTGCAAAATAAATAATTTGAAACG
* * *
6360 ATATTTGGTCGA-A-T-TT-G-A-G-TGCGATAGGGGACAGCCTTTATCTGAATAGATTGCGCAT
196 ATATTTGGTCGATATTATTCGCACGATGCGATAGGGGACAGCCTTTATATAAATAGATTGCGCAA
*
6418 GAGTTGACGGGTGCGATCATACCAGCACTAATGCACCAGATCCTATCAGAACTCCG-AGGAAAGC
261 GAGTTGACGGGTGCGATCATACCAGCACTAATGCACC-GAT-CTATCAGAACTCCGCAGGTAAGC
* *
6482 GTGCTT-GGCGAGAGCAGTACTAGGATTGGTGACCT-CTAGGGAAGTCCTCGTGTTGCACCCCTC
324 GTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCT-GGGAAGTCCTCGTGTTGCACCCCTC
* * * *
6545 CTATTTTATTTCATATAA-TTTTTTTAATTGCATTTTCTTCACGTGGTGTAACTCATTCGTTATT
388 CCATTTTATTTCATACAATTTTTTTTAGTTGCATTTTCTTCACGTGGTGTAGCTCATTCGTTATT
* * * *
6609 TTCATTTTGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTTAAATTTGAGGCGC
453 TTCGTTTTCCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCGAGGCGC
* * * *
6674 AATTGCGATAAGGGGCAACATTTATATGAATTGATTGCACAAGAGTTGACGGGTGCGATTATACT
518 AAGTGCGATAAGGGGCAAC-TTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACT
6739 AGCACTA
582 AGCACTA
* * * * *
6746 ATGCATCGGATCCCATCAGAACTCCGCCGTTAAGCGTGCTTGGGCGAGAGTAGTAGTAGGATGGG
1 ATGCACCGGATCCCATCAGAACTCTGCTGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGAG
* * * *
6811 TGACCTCTTGGGAAGTTCTCGTGTTGCACCCTTCCCATTTTATTTCATATAACATTTTTTTAGTT
66 TGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATATTTTTTTAGTT
* * * *
6876 GCATTTGCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCAAAATATATAATTTGAAACA
131 GCATTTTCTCCACGTGGTCTAACTCATTCGTTATTTGCGTTTTGCAAAATAAATAATTTGAAACG
* * * *
6941 ATATTTGGTCAAATTTTCATTCAAATTCG-AGGCGCAATTGCGATAAGGGG-CAACATTTATATG
196 ATATTTGGTC-GA---T-ATT---ATTCGCA--CG--A-TGCGAT-AGGGGACAGCCTTTATATA
* * * * * *
7004 AATTGATTGCACAAGAGTTGACGGGTGCGATTATACTAGCACTAATGCATCGGATCCCATCAGAA
247 AATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCA-CCGAT-CTATCAGAA
* *
7069 CTCCGCCGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCG
310 CTCCGCAGGTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCG
7134 TGTTGCACCCCTCCCATTTTATTTCATACAATTTTTTTTAGTTGCATTTTCTTCACGTGGTGTAG
375 TGTTGCACCCCTCCCATTTTATTTCATACAATTTTTTTTAGTTGCATTTTCTTCACGTGGTGTAG
* ** ** *** ** ** * *
7199 CTCATTCGTTATTTGCGTTTTCCGAGTTGCAT--TTTCTCCACG-T-GGT-GTAACTCATTCGTT
440 CTCATTCGTTATTTTCGTTTTCCGAAATAAATAATTT-GAAACGATATTTGGT--CGAATTTG-C
**** * * ** *** * ** * *
7259 ATTTGTGTT--ATGCG-AAAT-AAATAATTTGAAACGATATTTGGTAA-A-ATTTGCATTCAA-A
501 ATTAAAATTCGAGGCGCAAGTGCGATAAGGGGCAACTTTATAT-G-AATAGA-TTGC--GCAAGA
* * * *
7317 -TTCGA-GGCGCAACTACGATAAGAGGTAGC-CTTTA
561 GTT-GACGG-G----TGCGATCATA-CTAGCAC--TA
*** * ** * * * ** ** *
7351 TATG-AATAGATTGCGCA--AGAGTTGACGGGTGTGATCATACCAGCACTAATGCACCGA-A-TC
1 -ATGCACCGGA-T-CCCATCAGAACT--CTGCTGT--T-A-AGC-GTGCT--TG-GGCGAGAGTA
** * * * ** ** *
7411 CCA-TCAGAACTCCGAAGTTAAGCGTGATTGGGCGAGAGTAGTAC-TAGGATTGGTGACCTCCTA
53 GTACT-AGGA-T--G-AG-TGA-CCT-CCT-GG-GA-AGTCCT-CGT--G-TT-G-CACC-CCT-
*** * * * * **
7474 GGAAGTCCTCGTGTTGCACCACTCCTATTTTATTTCATATAATGCTTTTTTTGTTGCATTTTCTC
99 CCCA-T--T-TTATTTCA-TA-TAATATTTT---T--T-T-A----------GTTGCATTTTCTC
* * * * * *
7539 CACGTGGTGTAATTCATTCCTTATTTGCGTTATGCGAAATAAATAATTTGAAATGATATTTGGTC
141 CACGTGGTCTAACTCATTCGTTATTTGCGTTTTGCAAAATAAATAATTTGAAACGATATTTGGTC
* * * *
7604 GAATTTGAATTCAAATTTG-AGGCGCAATTACGATAAGGGG-CAGCCTTTATATGAACAGATTGC
206 G-A--T--ATT---ATTCGCA--CG--A-TGCGAT-AGGGGACAGCCTTTATATAAATAGATTGC
* * * * * *
7667 GCAAGAGTTGACGGGTGCGATCATACCAGCACTCATGCACCGGATCCTATTAAAACTACACAGTT
257 GCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACC-GAT-CTATCAGAACTCCGCAGGT
* *
7732 AAACGTGCTTGAGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCC
320 AAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCC
* * * * *
7797 CTCCCATTTTATTTCATATAATATTTTTTAGTTGCATTCTCTCCACGTGGTGTAACTCATTCGTT
385 CTCCCATTTTATTTCATACAATTTTTTTTAGTTGCATTTTCTTCACGTGGTGTAGCTCATTCGTT
* * * *
7862 ATTTGCGTTTTGCGAAATAAATAATTTGAAACAATATTTGGTCGAATTTGCATTCAAATTCGAGG
450 ATTTTCGTTTTCCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCGAGG
* * * * * *
7927 CGCAACTGCGATAAGAGGTAGCCTTTATATGAATTGATTGCGCAAGAGTTGATGGGTGCGATCAT
515 CGCAAGTGCGATAAGGGGCA-ACTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCAT
*
7992 A-TCGGCACTA
579 ACT-AGCACTA
* * * * * * *
8002 ATGCATCGGATCCCATCAAAATTAC-GCAGTAAAGCGTGCTTGGGCGAGAGTTGTACTAGGATGG
1 ATGCACCGGATCCCATCAGAACT-CTGCTGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGA
* * *
8066 GTGACCTCCTGGGAAGTCTTCGTGTTGCAACCCTCGCATTTTATTTCATATAATATTTATTTT-G
65 GTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATATTT-TTTTAG
* * * *
8130 TTGCATTTTCTCCACCTGGTGTAACTCATTCGTTATTTGCGTTTTGCTAAATAAATCATTTGAAA
129 TTGCATTTTCTCCACGTGGTCTAACTCATTCGTTATTTGCGTTTTGCAAAATAAATAATTTGAAA
* * * *
8195 CGATATTTGGTCGACTTTCCATTCAAATTCAAGGAGCAATTGCGATAAGGGG-CAACATTTATAT
194 CGATATTTGGTCGA---T--ATT---ATTC--GCA-CGA-TGCGAT-AGGGGACAGCCTTTATAT
* * * * * ** * * *
8259 GAATAGATTACACAAGAGTTGACGGGTGCGATCATACTAACACTAATGCATTGGGTCCCATCAAA
246 AAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCA-CCGAT-CTATCAGA
** * * * *
8324 ACTCCGCAATTAAGCGCGCTTGGGTGAGAGTAGTACTAGGATGGGTGATCTCCTGAGAAGTCCTC
309 ACTCCGCAGGTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTC
* * *
8389 GTGTTACACACCTCCCATTTTATTTCATATAATGTTCTTTTTTAGTTGCAT
374 GTGTTGCACCCCTCCCATTTTATTTCATACAA--TT-TTTTTTAGTTGCAT
8440 GTGGCACCGC
Statistics
Matches: 2282, Mismatches: 380, Indels: 360
0.76 0.13 0.12
Matches are distributed among these distances:
548 5 0.00
549 49 0.02
552 1 0.00
553 2 0.00
554 1 0.00
556 3 0.00
557 3 0.00
560 1 0.00
561 1 0.00
562 1 0.00
565 1 0.00
566 1 0.00
567 6 0.00
568 326 0.14
569 72 0.03
570 1 0.00
572 2 0.00
575 2 0.00
577 1 0.00
580 2 0.00
581 351 0.15
582 68 0.03
583 1 0.00
584 2 0.00
587 2 0.00
588 1 0.00
589 1 0.00
591 1 0.00
592 3 0.00
593 2 0.00
596 2 0.00
597 6 0.00
598 17 0.01
599 12 0.01
600 86 0.04
601 27 0.01
602 78 0.03
603 317 0.14
604 244 0.11
605 19 0.01
606 19 0.01
607 7 0.00
609 1 0.00
610 1 0.00
611 2 0.00
612 4 0.00
613 5 0.00
614 4 0.00
615 4 0.00
616 2 0.00
617 1 0.00
618 3 0.00
619 2 0.00
620 8 0.00
621 4 0.00
622 7 0.00
623 6 0.00
624 1 0.00
625 2 0.00
626 4 0.00
627 4 0.00
628 5 0.00
629 3 0.00
630 3 0.00
631 2 0.00
632 1 0.00
633 6 0.00
634 7 0.00
635 3 0.00
636 7 0.00
637 2 0.00
638 2 0.00
639 2 0.00
640 1 0.00
641 4 0.00
642 5 0.00
643 6 0.00
644 4 0.00
645 2 0.00
646 1 0.00
649 6 0.00
650 6 0.00
651 10 0.00
652 6 0.00
653 320 0.14
654 7 0.00
655 9 0.00
656 8 0.00
657 11 0.00
658 15 0.01
659 6 0.00
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (588 bp):
ATGCACCGGATCCCATCAGAACTCTGCTGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGAG
TGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATATTTTTTTAGTT
GCATTTTCTCCACGTGGTCTAACTCATTCGTTATTTGCGTTTTGCAAAATAAATAATTTGAAACG
ATATTTGGTCGATATTATTCGCACGATGCGATAGGGGACAGCCTTTATATAAATAGATTGCGCAA
GAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGATCTATCAGAACTCCGCAGGTAAGCGT
GCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCA
TTTTATTTCATACAATTTTTTTTAGTTGCATTTTCTTCACGTGGTGTAGCTCATTCGTTATTTTC
GTTTTCCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCGAGGCGCAAG
TGCGATAAGGGGCAACTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACTAGCA
CTA
Found at i:6939 original size:302 final size:302
Alignment explanation
Indices: 5907--7219 Score: 1798
Period size: 302 Copynumber: 4.4 Consensus size: 302
5897 TAATGCAACA
5907 GCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTAT
1 GCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTAT
* * *
5972 TTCATACAAT-TTTTTTTAGTTGCATTTTCTTCACGTGGTGTAGCTCATTCGTTATTTGCGTTTT
66 TTCATATAATATTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTT
* * * * *
6036 CCGAAATAAATAATTTGAAACGATATTTGGTCAAATTTGCATTAAAATTCAAGGCGCAAGTGCGA
131 GCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAATTGCGA
* * * ** * * *
6101 TAAGAGGCAACCTATATATGAACAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTGA
196 TAAGGGGCAACATTTATATGAATTGATTGCACAAGAGTTGACGGGTGCGATCATACTAGCACTAA
* * * *
6166 TGCACCGGATCCCATCAGGACTCTGCTGTTAAGCGTGCTTGG
261 TGCATCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGG
* * * *
6208 GTGAGAGTTGTACTAGGATGAGTGACCTCCTGGGATGTCCTCGTGTTGCACCCCTCCCATTTTAT
1 GCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTAT
* * *
6273 TTCATATAATATATTTTTAGTTGCATTTTCTCCACCTGGTCTAACTCATTCGTTATTTGCGTTTT
66 TTCATATAATATTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTT
* * *
6338 CCAAAATAAATAAGTTGAAACGATATTTGGTCG-A-----A-T----TT-GA---G----TGCGA
131 GCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAATTGCGA
* * * * * * *
6384 T-AGGGGACAGCCTTTATCTGAATAGATTGCGCATGAGTTGACGGGTGCGATCATACCAGCACTA
196 TAAGGGG-CAACATTTATATGAATTGATTGCACAAGAGTTGACGGGTGCGATCATACTAGCACTA
* * * **
6448 ATGCACCAGATCCTATCAGAACTCCG-AGGAAAGCGTGCTT-G
260 ATGCATCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGG
* * *
6489 GCGAGAGCAGTACTAGGATTGGTGACCT-CTAGGGAAGTCCTCGTGTTGCACCCCTCCTATTTTA
1 GCGAGAGTAGTACTAGGATGGGTGACCTCCT-GGGAAGTCCTCGTGTTGCACCCCTCCCATTTTA
* * * *
6553 TTTCATAT-A-ATTTTTTTAATTGCATTTTCTTCACGTGGTGTAACTCATTCGTTATTTTCATTT
65 TTTCATATAATATTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTT
* *
6616 TGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTTAAATTTGAGGCGCAATTGCG
130 TGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAATTGCG
*
6681 ATAAGGGGCAACATTTATATGAATTGATTGCACAAGAGTTGACGGGTGCGATTATACTAGCACTA
195 ATAAGGGGCAACATTTATATGAATTGATTGCACAAGAGTTGACGGGTGCGATCATACTAGCACTA
*
6746 ATGCATCGGATCCCATCAGAACTCCGCCGTTAAGCGTGCTTGG
260 ATGCATCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGG
* * * *
6789 GCGAGAGTAGTAGTAGGATGGGTGACCTCTTGGGAAGTTCTCGTGTTGCACCCTTCCCATTTTAT
1 GCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTAT
* *
6854 TTCATATAACATTTTTTTAGTTGCATTTGCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTT
66 TTCATATAATATTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTT
* * * * *
6919 GCAAAATATATAATTTGAAACAATATTTGGTCAAATTTTCATTCAAATTCGAGGCGCAATTGCGA
131 GCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAATTGCGA
*
6984 TAAGGGGCAACATTTATATGAATTGATTGCACAAGAGTTGACGGGTGCGATTATACTAGCACTAA
196 TAAGGGGCAACATTTATATGAATTGATTGCACAAGAGTTGACGGGTGCGATCATACTAGCACTAA
*
7049 TGCATCGGATCCCATCAGAACTCCGCCGTTAAGCGTGCTTGG
261 TGCATCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGG
7091 GCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTAT
1 GCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTAT
* * *
7156 TTCATACAAT-TTTTTTTAGTTGCATTTTCTTCACGTGGTGTAGCTCATTCGTTATTTGCGTTTT
66 TTCATATAATATTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTT
7220 CCGAGTTGCA
Statistics
Matches: 897, Mismatches: 87, Indels: 56
0.86 0.08 0.05
Matches are distributed among these distances:
279 78 0.09
280 4 0.00
281 63 0.07
282 15 0.02
283 79 0.09
285 1 0.00
286 1 0.00
287 1 0.00
290 3 0.00
291 4 0.00
294 1 0.00
295 1 0.00
296 1 0.00
298 78 0.09
299 16 0.02
300 64 0.07
301 124 0.14
302 363 0.40
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (302 bp):
GCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTAT
TTCATATAATATTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTT
GCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAATTGCGA
TAAGGGGCAACATTTATATGAATTGATTGCACAAGAGTTGACGGGTGCGATCATACTAGCACTAA
TGCATCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGG
Found at i:7826 original size:653 final size:653
Alignment explanation
Indices: 6572--7872 Score: 1962
Period size: 653 Copynumber: 2.0 Consensus size: 653
6562 ATTTTTTTAA
* *
6572 TTGCATTTTCTTCACGTGGTGTAACTCATTCGTTATTTTCATTTTGCGAAATAAATAATTTGAAA
1 TTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTTCATTATGCGAAATAAATAATTTGAAA
** * * * * *
6637 CGATATTTGGTCGAATTTGCATTTAAATTTGAGGCGCAATTGCGATAAGGGGCAACATTTATATG
66 CGATATTTGGTAAAATTTGCATTCAAATTCGAGGCGCAACTACGATAAGAGGCAACATTTATATG
* * * * *
6702 AATTGATTGCACAAGAGTTGACGGGTGCGATTATACTAGCACTAATGCATCGGATCCCATCAGAA
131 AATAGATTGCACAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGAATCCCATCAGAA
** * * * * *
6767 CTCCGCCGTTAAGCGTGCTTGGGCGAGAGTAGTAGTAGGATGGGTGACCTCTTGGGAAGTTCTCG
196 CTCCGAAGTTAAGCGTGATTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTAGGAAGTCCTCG
6832 TGTTGCACCCTTCCCATTTTATTTCATATAACATTTTTTTAGTTGCATTTGCTCCACGTGGTGTA
261 TGTTGCACCCTTCCCATTTTATTTCATATAACATTTTTTTAGTTGCATTTGCTCCACGTGGTGTA
* * * **
6897 ACTCATTCGTTATTTGCGTTTTGCAAAATATATAATTTGAAACAATATTTGGTCAAATTTTCATT
326 ACTCATTCCTTATTTGCGTTATGCAAAATAAATAATTTGAAACAATATTTGGTCAAATTTGAATT
* **
6962 CAAATTCGAGGCGCAATTGCGATAAGGGGCAACATTTATATGAATTGATTGCACAAGAGTTGACG
391 CAAATTCGAGGCGCAATTACGATAAGGGGCAACATTTATATGAACAGATTGCACAAGAGTTGACG
* * * * * * * * *
7027 GGTGCGATTATACTAGCACTAATGCATCGGATCCCATCAGAACTCCGCCGTTAAGCGTGCTTGGG
456 GGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAAAACTACACAGTTAAACGTGCTTGAG
7092 CGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATT
521 CGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATT
* * * *
7157 TCATACAATTTTTTTTAGTTGCATTTTCTTCACGTGGTGTAGCTCATTCGTTATTTGCGTTTTCC
586 TCATACAATATTTTTTAGTTGCATTCTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTCC
7222 GAG
651 GAG
*
7225 TTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGT-GTTATGCGAAATAAATAATTTGAA
1 TTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTT-TCATTATGCGAAATAAATAATTTGAA
* * *
7289 ACGATATTTGGTAAAATTTGCATTCAAATTCGAGGCGCAACTACGATAAGAGGTAGCCTTTATAT
65 ACGATATTTGGTAAAATTTGCATTCAAATTCGAGGCGCAACTACGATAAGAGGCAACATTTATAT
* *
7354 GAATAGATTGCGCAAGAGTTGACGGGTGTGATCATACCAGCACTAATGCACCGAATCCCATCAGA
130 GAATAGATTGCACAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGAATCCCATCAGA
*
7419 ACTCCGAAGTTAAGCGTGATTGGGCGAGAGTAGTACTAGGATTGGTGACCTCCTAGGAAGTCCTC
195 ACTCCGAAGTTAAGCGTGATTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTAGGAAGTCCTC
* *
7484 GTGTTGCACCAC-TCCTATTTTATTTCATATAATGC-TTTTTTT-GTTGCATTTTCTCCACGTGG
260 GTGTTGCACC-CTTCCCATTTTATTTCATATAA--CATTTTTTTAGTTGCATTTGCTCCACGTGG
* * ** *
7546 TGTAATTCATTCCTTATTTGCGTTATGCGAAATAAATAATTTGAAATGATATTTGGTCGAATTTG
322 TGTAACTCATTCCTTATTTGCGTTATGCAAAATAAATAATTTGAAACAATATTTGGTCAAATTTG
* * * *
7611 AATTCAAATTTGAGGCGCAATTACGATAAGGGGCAGCCTTTATATGAACAGATTGCGCAAGAGTT
387 AATTCAAATTCGAGGCGCAATTACGATAAGGGGCAACATTTATATGAACAGATTGCACAAGAGTT
* * *
7676 GACGGGTGCGATCATACCAGCACTCATGCACCGGATCCTATTAAAACTACACAGTTAAACGTGCT
452 GACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAAAACTACACAGTTAAACGTGCT
7741 TGAGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTT
517 TGAGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTT
*
7806 TATTTCATATAATATTTTTTAGTTGCATTCTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTT
582 TATTTCATACAATATTTTTTAGTTGCATTCTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTT
7871 TT
647 TT
7873 GCGAAATAAA
Statistics
Matches: 580, Mismatches: 64, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
653 570 0.98
654 9 0.02
655 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.34
Consensus pattern (653 bp):
TTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTTCATTATGCGAAATAAATAATTTGAAA
CGATATTTGGTAAAATTTGCATTCAAATTCGAGGCGCAACTACGATAAGAGGCAACATTTATATG
AATAGATTGCACAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGAATCCCATCAGAA
CTCCGAAGTTAAGCGTGATTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTAGGAAGTCCTCG
TGTTGCACCCTTCCCATTTTATTTCATATAACATTTTTTTAGTTGCATTTGCTCCACGTGGTGTA
ACTCATTCCTTATTTGCGTTATGCAAAATAAATAATTTGAAACAATATTTGGTCAAATTTGAATT
CAAATTCGAGGCGCAATTACGATAAGGGGCAACATTTATATGAACAGATTGCACAAGAGTTGACG
GGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAAAACTACACAGTTAAACGTGCTTGAG
CGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATT
TCATACAATATTTTTTAGTTGCATTCTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTCC
GAG
Found at i:7968 original size:301 final size:301
Alignment explanation
Indices: 7223--8439 Score: 1673
Period size: 302 Copynumber: 4.0 Consensus size: 301
7213 GCGTTTTCCG
*
7223 AGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGTGTTATGCGAAATAAATAATTTGA
1 AGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTATGCGAAATAAATAATTTGA
** *
7288 AACGATATTTGGTAAAATTTGCATTCAAATTCGAGGCGCAACTACGATAAGAGGTAGCCTTTATA
66 AACGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAACTACGATAAGAGGCAGCCTTTATA
* * *
7353 TGAATAGATTGCGCAAGAGTTGACGGGTGTGATCATACCAGCACTAATGCACCGAATCCCATCAG
131 TGAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAA
* * * * *
7418 AACTCCGA-AGTTAAGCGTGATTGGGCGAGAGTAGTACTAGGATTGGTGACCTCCTAGGAAGTCC
196 AACTAC-ACAGTTAAACGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCC
* * *
7482 TCGTGTTGCACCACTCCTATTTTATTTCATATAATGCTTTTTT
260 TCGTGTTGCACCCCTCCCATTTTATTTCATATAAT-ATTTTTT
* * *
7525 TGTTGCATTTTCTCCACGTGGTGTAATTCATTCCTTATTTGCGTTATGCGAAATAAATAATTTGA
1 AGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTATGCGAAATAAATAATTTGA
* * * * *
7590 AATGATATTTGGTCGAATTTGAATTCAAATTTGAGGCGCAATTACGATAAGGGGCAGCCTTTATA
66 AACGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAACTACGATAAGAGGCAGCCTTTATA
* * * *
7655 TGAACAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTCATGCACCGGATCCTATTAA
131 TGAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAA
*
7720 AACTACACAGTTAAACGTGCTTGAGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCT
196 AACTACACAGTTAAACGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCT
7785 CGTGTTGCACCCCTCCCATTTTATTTCATATAATATTTTTT
261 CGTGTTGCACCCCTCCCATTTTATTTCATATAATATTTTTT
* *
7826 AGTTGCATTCTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGA
1 AGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTATGCGAAATAAATAATTTGA
* * *
7891 AACAATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAACTGCGATAAGAGGTAGCCTTTATA
66 AACGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAACTACGATAAGAGGCAGCCTTTATA
* * * * *
7956 TGAATTGATTGCGCAAGAGTTGATGGGTGCGATCATATCGGCACTAATGCATCGGATCCCATCAA
131 TGAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAA
* * * *
8021 AATTACGCAG-TAAAGCGTGCTTGGGCGAGAGTTGTACTAGGATGGGTGACCTCCTGGGAAGTCT
196 AACTACACAGTTAAA-CGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCC
* *
8085 TCGTGTTGCAACCCTCGCATTTTATTTCATATAATATTTATTT
260 TCGTGTTGCACCCCTCCCATTTTATTTCATATAATATTT-TTT
* * * * *
8128 TGTTGCATTTTCTCCACCTGGTGTAACTCATTCGTTATTTGCGTTTTGCTAAATAAATCATTTGA
1 AGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTATGCGAAATAAATAATTTGA
* * * * * * * * *
8193 AACGATATTTGGTCGACTTTCCATTCAAATTCAAGGAGCAATTGCGATAAGGGGCAACATTTATA
66 AACGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAACTACGATAAGAGGCAGCCTTTATA
* * * * ** *
8258 TGAATAGATTACACAAGAGTTGACGGGTGCGATCATACTAACACTAATGCATTGGGTCCCATCAA
131 TGAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAA
* * * * * * * *
8323 AACTCCGCAATTAAGCGCGCTTGGGTGAGAGTAGTACTAGGATGGGTGATCTCCTGAGAAGTCCT
196 AACTACACAGTTAAACGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCT
* * *
8388 CGTGTTACACACCTCCCATTTTATTTCATATAATGTTCTTTTTT
261 CGTGTTGCACCCCTCCCATTTTATTTCATATAA---TATTTTTT
8432 AGTTGCAT
1 AGTTGCAT
8440 GTGGCACCGC
Statistics
Matches: 810, Mismatches: 98, Indels: 12
0.88 0.11 0.01
Matches are distributed among these distances:
300 4 0.00
301 271 0.33
302 518 0.64
303 3 0.00
304 10 0.01
305 4 0.00
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (301 bp):
AGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTATGCGAAATAAATAATTTGA
AACGATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAACTACGATAAGAGGCAGCCTTTATA
TGAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAA
AACTACACAGTTAAACGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCT
CGTGTTGCACCCCTCCCATTTTATTTCATATAATATTTTTT
Found at i:8367 original size:603 final size:604
Alignment explanation
Indices: 7223--8439 Score: 1785
Period size: 603 Copynumber: 2.0 Consensus size: 604
7213 GCGTTTTCCG
* *
7223 AGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGTGTTATGCGAAATAAATAATTTGA
1 AGTTGCATTCTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTATGCGAAATAAATAATTTGA
*
7288 AACGATATTTGGTAAAATTTGCATTCAAATTCGAGGCGCAACTACGATAAGAGGTAGCCTTTATA
66 AACAATATTTGGTAAAATTTGCATTCAAATTCGAGGCGCAACTACGATAAGAGGTAGCCTTTATA
* *
7353 TGAATAGATTGCGCAAGAGTTGACGGGTGTGATCATACCAGCACTAATGCACCGAATCCCATCAG
131 TGAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGAATCCCATCAA
* * *
7418 AACTCCGAAGTTAAGCGTGATTGGGCGAGAGTAGTACTAGGATTGGTGACCTCCTAGGAAGTCCT
196 AACTACGAAGTAAAGCGTGATTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTAGGAAGTCCT
* *
7483 CGTGTTGCACCACTCCTATTTTATTTCATATAATGCTTTTTTTGTTGCATTTTCTCCACGTGGTG
261 CGTGTTGCACCACTCCTATTTTATTTCATATAATGATTTTTTTGTTGCATTTTCTCCACCTGGTG
* * *
7548 TAATTCATTCCTTATTTGCGTTATGCGAAATAAATAATTTGAAATGATATTTGGTCGAATTTGAA
326 TAACTCATTCCTTATTTGCGTTATGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTCAA
** * * * * *
7613 TTCAAATTTGAGGCGCAATTACGATAAGGGGCAGCCTTTATATGAACAGATTGCGCAAGAGTTGA
391 TTCAAATTCAAGGAGCAATTACGATAAGGGGCAACATTTATATGAACAGATTACACAAGAGTTGA
* * * * * *
7678 CGGGTGCGATCATACCAGCACTCATGCACCGGATCCTATTAAAACTACACAGTTAAACGTGCTTG
456 CGGGTGCGATCATACCAACACTAATGCACCGGATCCCATCAAAACTACACAATTAAACGCGCTTG
* * *
7743 AGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTA
521 AGCGAGAGTAGTACTAGGATGGGTGACCTCCTGAGAAGTCCTCGTGTTACACACCTCCCATTTTA
7808 TTTCATATAA-TATTTTTT
586 TTTCATATAATTATTTTTT
*
7826 AGTTGCATTCTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGA
1 AGTTGCATTCTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTATGCGAAATAAATAATTTGA
** *
7891 AACAATATTTGGTCGAATTTGCATTCAAATTCGAGGCGCAACTGCGATAAGAGGTAGCCTTTATA
66 AACAATATTTGGTAAAATTTGCATTCAAATTCGAGGCGCAACTACGATAAGAGGTAGCCTTTATA
* * * * * *
7956 TGAATTGATTGCGCAAGAGTTGATGGGTGCGATCATATCGGCACTAATGCATCGGATCCCATCAA
131 TGAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGAATCCCATCAA
* * * * * *
8021 AATTACGCAGTAAAGCGTGCTTGGGCGAGAGTTGTACTAGGATGGGTGACCTCCTGGGAAGTCTT
196 AACTACGAAGTAAAGCGTGATTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTAGGAAGTCCT
8086 CGTGTTGCAACC-CTCGC-ATTTTATTTCATATAAT-ATTTATTTTGTTGCATTTTCTCCACCTG
261 CGTGTTGC-ACCACTC-CTATTTTATTTCATATAATGATTT-TTTTGTTGCATTTTCTCCACCTG
* * * * *
8148 GTGTAACTCATTCGTTATTTGCGTTTTGCTAAATAAATCATTTGAAACGATATTTGGTCGACTTT
323 GTGTAACTCATTCCTTATTTGCGTTATGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTT
* * *
8213 CCATTCAAATTCAAGGAGCAATTGCGATAAGGGGCAACATTTATATGAATAGATTACACAAGAGT
388 CAATTCAAATTCAAGGAGCAATTACGATAAGGGGCAACATTTATATGAACAGATTACACAAGAGT
* ** * * * *
8278 TGACGGGTGCGATCATACTAACACTAATGCATTGGGTCCCATCAAAACTCCGCAATTAAGCGCGC
453 TGACGGGTGCGATCATACCAACACTAATGCACCGGATCCCATCAAAACTACACAATTAAACGCGC
* * *
8343 TTGGGTGAGAGTAGTACTAGGATGGGTGATCTCCTGAGAAGTCCTCGTGTTACACACCTCCCATT
518 TTGAGCGAGAGTAGTACTAGGATGGGTGACCTCCTGAGAAGTCCTCGTGTTACACACCTCCCATT
*
8408 TTATTTCATATAATGTTCTTTTTT
583 TTATTTCATATAA--TTATTTTTT
8432 AGTTGCAT
1 AGTTGCAT
8440 GTGGCACCGC
Statistics
Matches: 544, Mismatches: 64, Indels: 9
0.88 0.10 0.01
Matches are distributed among these distances:
602 3 0.01
603 522 0.96
604 4 0.01
606 15 0.03
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (604 bp):
AGTTGCATTCTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTATGCGAAATAAATAATTTGA
AACAATATTTGGTAAAATTTGCATTCAAATTCGAGGCGCAACTACGATAAGAGGTAGCCTTTATA
TGAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGAATCCCATCAA
AACTACGAAGTAAAGCGTGATTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTAGGAAGTCCT
CGTGTTGCACCACTCCTATTTTATTTCATATAATGATTTTTTTGTTGCATTTTCTCCACCTGGTG
TAACTCATTCCTTATTTGCGTTATGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTCAA
TTCAAATTCAAGGAGCAATTACGATAAGGGGCAACATTTATATGAACAGATTACACAAGAGTTGA
CGGGTGCGATCATACCAACACTAATGCACCGGATCCCATCAAAACTACACAATTAAACGCGCTTG
AGCGAGAGTAGTACTAGGATGGGTGACCTCCTGAGAAGTCCTCGTGTTACACACCTCCCATTTTA
TTTCATATAATTATTTTTT
Done.