Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold7324.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7314
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29


Found at i:3556 original size:70 final size:70

Alignment explanation


    Indices: 3443--3578  Score: 263
    Period size: 70  Copynumber: 1.9  Consensus size: 70

       3433 GGTTGGGTTG

                                                                             
       3443 CGTATTGATGCAAGAAGGTCGAGTCGTGGCCTATGCGTCGAGACAATTGAAGCCACACGAGAGGA
          1 CGTATTGATGCAAGAAGGTCGAGTCGTGGCCTATGCGTCGAGACAATTGAAGCCACACGAGAGGA

                 
       3508 ACTTA
         66 ACTTA

                                                                  *          
       3513 CGTATTGATGCAAGAAGGTCGAGTCGTGGCCTATGCGTCGAGACAATTGAAGCCGCACGAGAGGA
          1 CGTATTGATGCAAGAAGGTCGAGTCGTGGCCTATGCGTCGAGACAATTGAAGCCACACGAGAGGA

             
       3578 A
         66 A

       3579 TTATCCGACC


Statistics
Matches: 65,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  70   65  1.00

ACGTcount: A:0.29, C:0.20, G:0.32, T:0.19


Consensus pattern (70 bp):   
CGTATTGATGCAAGAAGGTCGAGTCGTGGCCTATGCGTCGAGACAATTGAAGCCACACGAGAGGA
ACTTA

Found at i:4756 original size:116 final size:116

Alignment explanation


    Indices: 4552--4783  Score: 437
    Period size: 116  Copynumber: 2.0  Consensus size: 116

       4542 GCTGCATTTT

                                                  **                         
       4552 AGCACTGCTTTTCACCCCCAAACCGATGGTCAATCCGAGCGGATAATTCAGATACTTGAGGATAT
          1 AGCACTGCTTTTCACCCCCAAACCGATGGTCAATCCGAAAGGATAATTCAGATACTTGAGGATAT

                                                               
       4617 GTTGAGATGTTGCATCCTCGAGTTCAGTAGTTCATGGGAACAGTATTTACC
         66 GTTGAGATGTTGCATCCTCGAGTTCAGTAGTTCATGGGAACAGTATTTACC

                                                                             
       4668 AGCACTGCTTTTCACCCCCAAACCGATGGTCAATCCGAAAGGATAATTCAGATACTTGAGGATAT
          1 AGCACTGCTTTTCACCCCCAAACCGATGGTCAATCCGAAAGGATAATTCAGATACTTGAGGATAT

                                                     *         
       4733 GTTGAGATGTTGCATCCTCGAGTTCAGTAGTTCATGGGAACGGTATTTACC
         66 GTTGAGATGTTGCATCCTCGAGTTCAGTAGTTCATGGGAACAGTATTTACC

       4784 TTTGATTGAA


Statistics
Matches: 113,  Mismatches: 3, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
 116  113  1.00

ACGTcount: A:0.27, C:0.22, G:0.22, T:0.28


Consensus pattern (116 bp):   
AGCACTGCTTTTCACCCCCAAACCGATGGTCAATCCGAAAGGATAATTCAGATACTTGAGGATAT
GTTGAGATGTTGCATCCTCGAGTTCAGTAGTTCATGGGAACAGTATTTACC
Done.