Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold2595.1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 221979
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 6803 characters in sequence are not A, C, G, or T
Found at i:2505 original size:19 final size:19
Alignment explanation
Indices: 2483--2529 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
2473 CTTCCTTTCT
2483 TTTGCATT-CATTCCATACA
1 TTTGCATTACATTCCA-ACA
*
2502 TTTGCATTACATTGCAACA
1 TTTGCATTACATTCCAACA
2521 TTTGCATTA
1 TTTGCATTA
2530 AACTTTCCCT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 20 0.77
20 6 0.23
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.43
Consensus pattern (19 bp):
TTTGCATTACATTCCAACA
Found at i:5785 original size:17 final size:17
Alignment explanation
Indices: 5765--5801 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
5755 CTTTAAGACC
5765 AAAAAAGAAAAAAGAAA
1 AAAAAAGAAAAAAGAAA
5782 AAAAAAGAAAAAAGAAA
1 AAAAAAGAAAAAAGAAA
5799 AAA
1 AAA
5802 GGAGAGGCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (17 bp):
AAAAAAGAAAAAAGAAA
Found at i:6936 original size:61 final size:64
Alignment explanation
Indices: 6860--6978 Score: 192
Period size: 61 Copynumber: 1.9 Consensus size: 64
6850 ATAACACATC
6860 TAGTTAGGAGCATTTGATTCATTTC-AT-A-A-CATCCTAATTATTTGACATAAAGCATCACAGT
1 TAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACAT-AAGCATCACAGT
*
6921 TAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGGCATAAGCAT
1 TAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCAT
6979 AGATACATGA
Statistics
Matches: 53, Mismatches: 1, Indels: 5
0.90 0.02 0.08
Matches are distributed among these distances:
61 25 0.47
62 2 0.04
63 1 0.02
64 7 0.13
65 18 0.34
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (64 bp):
TAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCATCACAGT
Found at i:7488 original size:205 final size:205
Alignment explanation
Indices: 7123--7611 Score: 757
Period size: 205 Copynumber: 2.4 Consensus size: 205
7113 ATCAGGCGGA
* * *
7123 GAGCAGATCGAACACATAGCTGATTTGGCTTTCATGTGTTTACGTTGAAGCAAATCTAAGATAAT
1 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATAAT
*
7188 TTGGCATCTTTGTATTGTCAGAGAACAAATCGAAGTCTAGCATCTCCATATCGATGGAAGGCAGA
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTAGCATCTCCATATCGATGGAAGGCAGA
* ** *
7253 CACATAGCAGATCCAACCTTCAGATGTTTATACTGAAGTTGATCCAAGATGGTTTGGCATCCTTG
131 CACATAGCAGATCCAACCTTCAAATGTTTATACTGAAGCAGATCCAAGATGGTTTGCCATCCTTG
7318 TGCTTACAAG
196 TGCTTACAAG
* * *
7328 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTAAAGCAAATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATAAT
* * * *
7393 TTGGCATCTCTGTATTGTTAGAGAACAAATTGAAGTCTGGCATCTCCACT-TCGATGG-AGGTTA
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTAGCATCTCCA-TATCGATGGAAGG-CA
7456 GACACATAGCAGATCCAACCTTCAAATGTTTATACTGAAGCAGATCCAAGATGGTTTGCCATCCT
129 GACACATAGCAGATCCAACCTTCAAATGTTTATACTGAAGCAGATCCAAGATGGTTTGCCATCCT
7521 TGTGCTTACAAG
194 TGTGCTTACAAG
* * * * *
7533 CAGTAAATTGAAGACATGGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCCAAGATAAT
1 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATAAT
*
7598 TTGGCGTCTCTGTA
66 TTGGCATCTCTGTA
7612 GCGGCAGAGA
Statistics
Matches: 258, Mismatches: 24, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
204 3 0.01
205 254 0.98
206 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (205 bp):
GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATAAT
TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTAGCATCTCCATATCGATGGAAGGCAGA
CACATAGCAGATCCAACCTTCAAATGTTTATACTGAAGCAGATCCAAGATGGTTTGCCATCCTTG
TGCTTACAAG
Found at i:8087 original size:88 final size:87
Alignment explanation
Indices: 7646--8560 Score: 601
Period size: 88 Copynumber: 10.5 Consensus size: 87
7636 GCAGATTTGG
* * * * *
7646 CATCCCCGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAA
1 CATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGAT-TGGCATCCCTGTGCTTATAGGGAA
* *
7711 GCAGATCGAAGAT-TTCAG--CATGA
65 -CAGATCAAAGATAAT-AGATC-TGA
* * *
7734 CATCCCTGTGCTTATAGGGAACA-AGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGA
1 CATCCCTGTGCTTATAGGGAACAGA-TCGAAGATAGCAGA-TTGGCATCCCTGTGCTTATAGGGA
7798 ACAGATCAAAGATAATAGATCTGA
64 ACAGATCAAAGATAATAGATCTGA
* * ** * * *
7822 CATTCCTGTGCTTA-CGGTGAAGCAGATCGAAGATTTCAGCA-TGGAATCCATGTGCTTACAGGG
1 CATCCCTGTGCTTATAGG-GAA-CAGATCGAAGATAGCAG-ATTGGCATCCCTGTGCTTATAGGG
* * ** * *
7885 AACAAGTTGAAA-ATAGCAGATTTGG
63 AAC-AGATCAAAGATAATAGATCTGA
* * * * ** *
7910 CATCCATGTGCTTATAGGGAACAGATCGAAGATAGCAAATCTGACATTCCTGTGCTTGCAGTGAA
1 CATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGAT-TGGCATCCCTGTGCTTATAGGGAA
* *
7975 GCAGATCGAAGAT-TTCAG--CATGA
65 -CAGATCAAAGATAAT-AGATC-TGA
* * *
7998 CATCCCTGTGCTTATAGGGAACA-AGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGA
1 CATCCCTGTGCTTATAGGGAACAGA-TCGAAGATAGCAGA-TTGGCATCCCTGTGCTTATAGGGA
8062 ACAGATCAAAGATAATAGATCTGA
64 ACAGATCAAAGATAATAGATCTGA
* * * **
8086 CATTCCTGTGCTTA-CGGTGAAGTAGATCGAAGATTTCAGCA-TGGCATCCCTGTGCTTATAGGG
1 CATCCCTGTGCTTATAGG-GAA-CAGATCGAAGATAGCAG-ATTGGCATCCCTGTGCTTATAGGG
8149 AACAGATCAAAGATAATAGATCTGA
63 AACAGATCAAAGATAATAGATCTGA
* * * **
8174 CATTCCTGTGCTTA-CGGTGAAGTAGATCGAAGATTTCAGCA-TGGCATCCCTGTGCTTATAGGG
1 CATCCCTGTGCTTATAGG-GAA-CAGATCGAAGATAGCAG-ATTGGCATCCCTGTGCTTATAGGG
8237 AACAGATCAAAGATAATAGATCTGA
63 AACAGATCAAAGATAATAGATCTGA
* * * **
8262 CATTCCTGTGCTTA-CGGTGAAGTAGATCGAAGATTTCAGCA-TGGCATCCCTGTGCTTATAGGG
1 CATCCCTGTGCTTATAGG-GAA-CAGATCGAAGATAGCAG-ATTGGCATCCCTGTGCTTATAGGG
* * * *
8325 AACAAGTTGAAA-ATACTTA-AT-TTA
63 AAC-AGATCAAAGATA-ATAGATCTGA
* * * * * * *
8349 -A-CTCTGTGCTTATAGGGAATA-AGTTGAAAACAGCATATTTGGCATCCCTGCGCTTATAGGGA
1 CATCCCTGTGCTTATAGGGAACAGA-TCGAAGATAGCAGA-TTGGCATCCCTGTGCTTATAGGGA
* * ** * *
8411 ACGGATCGAAGATAGCAGACCTAA
64 ACAGATCAAAGATAATAGATCTGA
* * * * ** *
8435 CATTCCTGTGCTTACAGTGAAGTAGATCGAAGATTTCAGCA-TGACATCCCTGTGCTTATAGGGA
1 CATCCCTGTGCTTATAGGGAA-CAGATCGAAGATAGCAG-ATTGGCATCCCTGTGCTTATAGGGA
* * * *
8499 ACAAGTTGAAA-ATACTTA-AT-TTA
64 AC-AGATCAAAGATA-ATAGATCTGA
* * *
8522 -A-CCCTGTGCTTATAGGGAACAGATCAAAAATAACAGATT
1 CATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATT
8561 TGGCGTCTCT
Statistics
Matches: 669, Mismatches: 115, Indels: 90
0.77 0.13 0.10
Matches are distributed among these distances:
83 3 0.00
84 27 0.04
85 55 0.08
86 7 0.01
87 51 0.08
88 462 0.69
89 58 0.09
90 6 0.01
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.26
Consensus pattern (87 bp):
CATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATTGGCATCCCTGTGCTTATAGGGAAC
AGATCAAAGATAATAGATCTGA
Found at i:8106 original size:264 final size:264
Alignment explanation
Indices: 7636--8152 Score: 962
Period size: 264 Copynumber: 2.0 Consensus size: 264
7626 ATCGAAGATT
* *
7636 GCAGATTTGGCATCCCCGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGC
1 GCAGATTTGGCATCCACGTGCTTATAGGGAACAGATCGAAGATAGCAAATCTGACATTCCTGTGC
7701 TTACAGTGAAGCAGATCGAAGATTTCAGCATGACATCCCTGTGCTTATAGGGAACAAGTTGAAAA
66 TTACAGTGAAGCAGATCGAAGATTTCAGCATGACATCCCTGTGCTTATAGGGAACAAGTTGAAAA
7766 CAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCAAAGATAATAGATCTGACATTCCTGT
131 CAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCAAAGATAATAGATCTGACATTCCTGT
7831 GCTTACGGTGAAGCAGATCGAAGATTTCAGCATGGAATCCATGTGCTTACAGGGAACAAGTTGAA
196 GCTTACGGTGAAGCAGATCGAAGATTTCAGCATGGAATCCATGTGCTTACAGGGAACAAGTTGAA
7896 AATA
261 AATA
*
7900 GCAGATTTGGCATCCATGTGCTTATAGGGAACAGATCGAAGATAGCAAATCTGACATTCCTGTGC
1 GCAGATTTGGCATCCACGTGCTTATAGGGAACAGATCGAAGATAGCAAATCTGACATTCCTGTGC
*
7965 TTGCAGTGAAGCAGATCGAAGATTTCAGCATGACATCCCTGTGCTTATAGGGAACAAGTTGAAAA
66 TTACAGTGAAGCAGATCGAAGATTTCAGCATGACATCCCTGTGCTTATAGGGAACAAGTTGAAAA
8030 CAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCAAAGATAATAGATCTGACATTCCTGT
131 CAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCAAAGATAATAGATCTGACATTCCTGT
* * * *
8095 GCTTACGGTGAAGTAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACA
196 GCTTACGGTGAAGCAGATCGAAGATTTCAGCATGGAATCCATGTGCTTACAGGGAACA
8153 GATCAAAGAT
Statistics
Matches: 245, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
264 245 1.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (264 bp):
GCAGATTTGGCATCCACGTGCTTATAGGGAACAGATCGAAGATAGCAAATCTGACATTCCTGTGC
TTACAGTGAAGCAGATCGAAGATTTCAGCATGACATCCCTGTGCTTATAGGGAACAAGTTGAAAA
CAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCAAAGATAATAGATCTGACATTCCTGT
GCTTACGGTGAAGCAGATCGAAGATTTCAGCATGGAATCCATGTGCTTACAGGGAACAAGTTGAA
AATA
Found at i:8187 original size:132 final size:132
Alignment explanation
Indices: 7636--8152 Score: 865
Period size: 132 Copynumber: 3.9 Consensus size: 132
7626 ATCGAAGATT
* * *
7636 GCAGATTTGGCATCCCCGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGC
1 GCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCAAAGATAACAGATCTGACATTCCTGTGC
7701 TTACAGTGAAGCAGATCGAAGATTTCAGCATGACATCCCTGTGCTTATAGGGAACAAGTTGAAAA
66 TTACAGTGAAGCAGATCGAAGATTTCAGCATGACATCCCTGTGCTTATAGGGAACAAGTTGAAAA
7766 CA
131 CA
*
7768 GCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCAAAGATAATAGATCTGACATTCCTGTGC
1 GCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCAAAGATAACAGATCTGACATTCCTGTGC
* * *
7833 TTACGGTGAAGCAGATCGAAGATTTCAGCATGGA-ATCCATGTGCTTACAGGGAACAAGTTGAAA
66 TTACAGTGAAGCAGATCGAAGATTTCAGCAT-GACATCCCTGTGCTTATAGGGAACAAGTTGAAA
*
7897 ATA
130 ACA
* * * *
7900 GCAGATTTGGCATCCATGTGCTTATAGGGAACAGATCGAAGATAGCAAATCTGACATTCCTGTGC
1 GCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCAAAGATAACAGATCTGACATTCCTGTGC
*
7965 TTGCAGTGAAGCAGATCGAAGATTTCAGCATGACATCCCTGTGCTTATAGGGAACAAGTTGAAAA
66 TTACAGTGAAGCAGATCGAAGATTTCAGCATGACATCCCTGTGCTTATAGGGAACAAGTTGAAAA
8030 CA
131 CA
*
8032 GCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCAAAGATAATAGATCTGACATTCCTGTGC
1 GCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCAAAGATAACAGATCTGACATTCCTGTGC
* * *
8097 TTACGGTGAAGTAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACA
66 TTACAGTGAAGCAGATCGAAGATTTCAGCATGACATCCCTGTGCTTATAGGGAACA
8153 GATCAAAGAT
Statistics
Matches: 356, Mismatches: 27, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
131 2 0.01
132 352 0.99
133 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (132 bp):
GCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCAAAGATAACAGATCTGACATTCCTGTGC
TTACAGTGAAGCAGATCGAAGATTTCAGCATGACATCCCTGTGCTTATAGGGAACAAGTTGAAAA
CA
Found at i:8409 original size:44 final size:44
Alignment explanation
Indices: 8303--8412 Score: 129
Period size: 41 Copynumber: 2.6 Consensus size: 44
8293 GATTTCAGCA
* *
8303 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATACTTAATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACACATAATT
* * *
8347 T---AACTCTGTGCTTATAGGGAATAAGTTGAAAACAGCAT-ATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACA-CATAATT
*
8388 TGGCATCCCTGCGCTTATAGGGAAC
1 TGGCATCCCTGTGCTTATAGGGAAC
8413 GGATCGAAGA
Statistics
Matches: 53, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
41 33 0.62
42 2 0.04
44 18 0.34
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (44 bp):
TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACACATAATT
Found at i:8448 original size:44 final size:44
Alignment explanation
Indices: 8391--8500 Score: 116
Period size: 44 Copynumber: 2.5 Consensus size: 44
8381 GCATATTTGG
* *
8391 CATCCCTGCGCTTATAGGGAACG-GATCGAAGATAGCAGACCTAA
1 CATCCCTGTGCTTATAGGGAACGAGATCGAAGATAGCAG-CATAA
* * * ** *
8435 CATTCCTGTGCTTACAGTGAA-GTAGATCGAAGATTTCAGCATGA
1 CATCCCTGTGCTTATAGGGAACG-AGATCGAAGATAGCAGCATAA
8479 CATCCCTGTGCTTATAGGGAAC
1 CATCCCTGTGCTTATAGGGAAC
8501 AAGTTGAAAA
Statistics
Matches: 52, Mismatches: 11, Indels: 5
0.76 0.16 0.07
Matches are distributed among these distances:
43 1 0.02
44 38 0.73
45 13 0.25
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.25
Consensus pattern (44 bp):
CATCCCTGTGCTTATAGGGAACGAGATCGAAGATAGCAGCATAA
Found at i:8564 original size:173 final size:173
Alignment explanation
Indices: 8001--8564 Score: 744
Period size: 173 Copynumber: 3.2 Consensus size: 173
7991 AGCATGACAT
*
8001 CCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAG
1 CCCTGTGCTTATAGGGAACAAGTCGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAG
8066 ATCAAAGATAATAGATCTGACATTCCTGTGCTTACGGTGAAGTAGATCGAAGATTTCAGCATGGC
66 ATCAAAGATAATAGATCTGACATTCCTGTGCTTACGGTGAAGTAGATCGAAGATTTCAGCATGGC
* * * *
8131 ATCCCTGTGCTTATAGGGAAC-AGATCAAAGATA-ATAGATCTGACA
131 ATCCCTGTGCTTATAGGGAACAAGTTGAAA-ATACTTA-AT-TTA-A
* * ** * ***
8176 TTCCTGTGCTTA-CGGTGAAGTAGATCGAAGATTTCAGCA--TGGCATCCCTGTGCTTATAGGGA
1 -CCCTGTGCTTATAGG-GAACAAG-TCGAAAACAGCAG-ATTTGGCATCCCTGTGCTTATAGGGA
8238 ACAGATCAAAGATAATAGATCTGACATTCCTGTGCTTACGGTGAAGTAGATCGAAGATTTCAGCA
62 ACAGATCAAAGATAATAGATCTGACATTCCTGTGCTTACGGTGAAGTAGATCGAAGATTTCAGCA
8303 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATACTTAATTTAA
127 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATACTTAATTTAA
* * * * * *
8350 CTCTGTGCTTATAGGGAATAAGTTGAAAACAGCATATTTGGCATCCCTGCGCTTATAGGGAACGG
1 CCCTGTGCTTATAGGGAACAAGTCGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAG
* ** * * * *
8415 ATCGAAGATAGCAGACCTAACATTCCTGTGCTTACAGTGAAGTAGATCGAAGATTTCAGCATGAC
66 ATCAAAGATAATAGATCTGACATTCCTGTGCTTACGGTGAAGTAGATCGAAGATTTCAGCATGGC
8480 ATCCCTGTGCTTATAGGGAACAAGTTGAAAATACTTAATTTAA
131 ATCCCTGTGCTTATAGGGAACAAGTTGAAAATACTTAATTTAA
* * *
8523 CCCTGTGCTTATAGGGAAC-AGATCAAAAATAACAGATTTGGC
1 CCCTGTGCTTATAGGGAACAAG-TCGAAAACAGCAGATTTGGC
8565 GTCTCTGTAT
Statistics
Matches: 339, Mismatches: 40, Indels: 21
0.85 0.10 0.05
Matches are distributed among these distances:
171 1 0.00
172 9 0.03
173 172 0.51
174 3 0.01
175 4 0.01
176 133 0.39
177 16 0.05
178 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (173 bp):
CCCTGTGCTTATAGGGAACAAGTCGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAG
ATCAAAGATAATAGATCTGACATTCCTGTGCTTACGGTGAAGTAGATCGAAGATTTCAGCATGGC
ATCCCTGTGCTTATAGGGAACAAGTTGAAAATACTTAATTTAA
Found at i:8628 original size:173 final size:173
Alignment explanation
Indices: 8001--8639 Score: 569
Period size: 173 Copynumber: 3.7 Consensus size: 173
7991 AGCATGACAT
** * * * *
8001 CCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAG
1 CCCTGTGCTTATAGGGAACAAGTCAAAAACAACAGATTTGGCATCCCTGCGATTAGAGGGAACAG
** * * * *
8066 ATCAAAGATAATAGATC-TGACATTCCTGTGCTTACGGTGAAGTAGATCGAAGATTTCAGCATGG
66 ATCAAAGATAGCAGA-CATAACATTCCTGAGCTTACAGTGAAGTAGATCGAAGATTTCAGCATGA
* * * *
8130 CATCCCTGTGCTTATAGGGAAC-AGATCAAAGATA-ATAGATCTGACA
130 CATCCCTGTGCTTATAGGGAACAAGTTGAAA-ATACTTA-AT-TTA-A
* * ** * * *** * * *
8176 TTCCTGTGCTTA-CGGTGAAGTAGATCGAAGATTTCAGCA--TGGCATCCCTGTGCTTATAGGGA
1 -CCCTGTGCTTATAGG-GAACAAG-TCAAAAACAACAG-ATTTGGCATCCCTGCGATTAGAGGGA
** * * *
8238 ACAGATCAAAGATAATAGATC-TGACATTCCTGTGCTTACGGTGAAGTAGATCGAAGATTTCAGC
62 ACAGATCAAAGATAGCAGA-CATAACATTCCTGAGCTTACAGTGAAGTAGATCGAAGATTTCAGC
*
8302 ATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATACTTAATTTAA
126 ATGACATCCCTGTGCTTATAGGGAACAAGTTGAAAATACTTAATTTAA
* * ** * * * * *
8350 CTCTGTGCTTATAGGGAATAAGTTGAAAACAGCATATTTGGCATCCCTGCGCTTATAGGGAACGG
1 CCCTGTGCTTATAGGGAACAAGTCAAAAACAACAGATTTGGCATCCCTGCGATTAGAGGGAACAG
* * *
8415 ATCGAAGATAGCAGACCTAACATTCCTGTGCTTACAGTGAAGTAGATCGAAGATTTCAGCATGAC
66 ATCAAAGATAGCAGACATAACATTCCTGAGCTTACAGTGAAGTAGATCGAAGATTTCAGCATGAC
8480 ATCCCTGTGCTTATAGGGAACAAGTTGAAAATACTTAATTTAA
131 ATCCCTGTGCTTATAGGGAACAAGTTGAAAATACTTAATTTAA
* * * * *
8523 CCCTGTGCTTATAGGGAAC-AGATCAAAAATAACAGATTTGGCGTCTCTG-TATTAGACGGGGAG
1 CCCTGTGCTTATAGGGAACAAG-TCAAAAACAACAGATTTGGCATCCCTGCGATTAGA--GGGAA
* ** * * * *
8586 CAGATCAAAGATAGCAGATATCGCCTTCCTGAG-TTGCAGTGAAGCAGATTGAAG
63 CAGATCAAAGATAGCAGACATAACATTCCTGAGCTTACAGTGAAGTAGATCGAAG
8640 TCGTCAAGAG
Statistics
Matches: 395, Mismatches: 56, Indels: 27
0.83 0.12 0.06
Matches are distributed among these distances:
171 1 0.00
172 14 0.04
173 194 0.49
174 32 0.08
175 4 0.01
176 133 0.34
177 16 0.04
178 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (173 bp):
CCCTGTGCTTATAGGGAACAAGTCAAAAACAACAGATTTGGCATCCCTGCGATTAGAGGGAACAG
ATCAAAGATAGCAGACATAACATTCCTGAGCTTACAGTGAAGTAGATCGAAGATTTCAGCATGAC
ATCCCTGTGCTTATAGGGAACAAGTTGAAAATACTTAATTTAA
Found at i:8952 original size:38 final size:38
Alignment explanation
Indices: 8901--8989 Score: 160
Period size: 38 Copynumber: 2.3 Consensus size: 38
8891 AACCCTAATC
*
8901 CCACCTACTCCACCACCCTTGTTGGCTACCCACCTTGG
1 CCACCTACTCCACCACCCTTGTTGGCCACCCACCTTGG
8939 CCACCTACTCCACCACCCTTGTTGGCCACCCACCTTGG
1 CCACCTACTCCACCACCCTTGTTGGCCACCCACCTTGG
*
8977 CCACCTACACCAC
1 CCACCTACTCCAC
8990 TATGCCACCA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
38 49 1.00
ACGTcount: A:0.18, C:0.51, G:0.11, T:0.20
Consensus pattern (38 bp):
CCACCTACTCCACCACCCTTGTTGGCCACCCACCTTGG
Found at i:9232 original size:13 final size:13
Alignment explanation
Indices: 9214--9252 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
9204 GGCTAAGGTT
*
9214 TTCTTTTCTTTTC
1 TTCTTTTATTTTC
9227 TTCTTTTATTTTTC
1 TTCTTTTA-TTTTC
*
9241 TTTTTTTATTTT
1 TTCTTTTATTTT
9253 TTTGAATCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
13 11 0.48
14 12 0.52
ACGTcount: A:0.05, C:0.13, G:0.00, T:0.82
Consensus pattern (13 bp):
TTCTTTTATTTTC
Found at i:9241 original size:14 final size:14
Alignment explanation
Indices: 9222--9253 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
9212 TTTTCTTTTC
9222 TTTTCTTCTTTTAT
1 TTTTCTTCTTTTAT
*
9236 TTTTCTTTTTTTAT
1 TTTTCTTCTTTTAT
9250 TTTT
1 TTTT
9254 TTGAATCTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.06, C:0.09, G:0.00, T:0.84
Consensus pattern (14 bp):
TTTTCTTCTTTTAT
Found at i:9974 original size:12 final size:12
Alignment explanation
Indices: 9959--10006 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
9949 TATTTCTCTC
9959 TTTATATTTATG
1 TTTATATTTATG
9971 TTTATATTTTATG
1 TTTATA-TTTATG
** *
9984 TATTATACCTATC
1 T-TTATATTTATG
9997 TTTATATTTA
1 TTTATATTTA
10007 CGCATGAATA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
12 13 0.45
13 11 0.38
14 5 0.17
ACGTcount: A:0.27, C:0.06, G:0.04, T:0.62
Consensus pattern (12 bp):
TTTATATTTATG
Found at i:11603 original size:12 final size:12
Alignment explanation
Indices: 11586--11613 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
11576 TTTTTTTTAA
11586 ATATATAAAATT
1 ATATATAAAATT
11598 ATATATAAAATT
1 ATATATAAAATT
11610 ATAT
1 ATAT
11614 TAACATTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (12 bp):
ATATATAAAATT
Found at i:17630 original size:20 final size:20
Alignment explanation
Indices: 17605--17654 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
17595 TGGCTTAAAA
17605 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
17625 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
17642 GTGGTAGTGGATT
1 TTGGTAGTGGATT
17655 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:25755 original size:38 final size:38
Alignment explanation
Indices: 25713--25788 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
25703 AGTAACGGAG
25713 ATAGGGCGATGCGCATTCCATTGCCTGGTTTGTCACAT
1 ATAGGGCGATGCGCATTCCATTGCCTGGTTTGTCACAT
*
25751 ATAGGGTGATGCGCATTCCATTGCCTGGTTTGTCACAT
1 ATAGGGCGATGCGCATTCCATTGCCTGGTTTGTCACAT
25789 TTTCGACAGC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.18, C:0.22, G:0.26, T:0.33
Consensus pattern (38 bp):
ATAGGGCGATGCGCATTCCATTGCCTGGTTTGTCACAT
Found at i:26626 original size:158 final size:155
Alignment explanation
Indices: 26307--26631 Score: 384
Period size: 158 Copynumber: 2.1 Consensus size: 155
26297 AAAAAAAGAA
* *
26307 TTTTTTTCCCCTTAATTGAGACAGAATAGAAGAAATTGTGAAAACTGAAAAACAAAGAGTGAAAA
1 TTTTTTT-CCCTTAATTGAGACAGAATACAAGAAAATGTGAAAACTGAAAAACAAAGAGTGAAAA
*
26372 CGATCAGAAACACAGATTTGAGAATTTGAAAGCAAAAAACAATTCGGATGATGAAAAAACAATGG
65 CGATCAGAAACACAGATTTGAGAATTTGAAAGCAAAAAACAATTCGGATGAAGAAAAAACAATGG
** ** * ** *
26437 ATTTGAAAGCAGGTTTTTTTTTTGTTT
130 AAGTGAAAG-AGGTTTACTTTATAATG
* *
26464 TTTTTTTCCCTTAATTGACAGACAGAATACAAGAAAATGTGAAAATTGAAAAACAAAGAGTGGAA
1 TTTTTTTCCCTTAATTG--AGACAGAATACAAGAAAATGTGAAAACTGAAAAACAAAGAGTGAAA
* * * *
26529 ATGATCAGAAACACAGATTTGAGAATTTGAAAGCAAAAAAGACTTTTGGATGAAGAAAAAACAAT
64 ACGATCAGAAACACAGATTTGAGAATTTGAAAGCAAAAAACA-ATTCGGATGAAGAAAAAACAAT
***
26594 GGCAAGT-CTTG-GGTTTAACTTTATAATG
128 GG-AAGTGAAAGAGGTTT-ACTTTATAATG
26622 TTTTTCTTCC
1 TTTTT-TTCC
26632 TCATTAGTTT
Statistics
Matches: 142, Mismatches: 20, Indels: 10
0.83 0.12 0.06
Matches are distributed among these distances:
156 10 0.07
157 12 0.08
158 92 0.65
159 26 0.18
160 2 0.01
ACGTcount: A:0.42, C:0.11, G:0.18, T:0.29
Consensus pattern (155 bp):
TTTTTTTCCCTTAATTGAGACAGAATACAAGAAAATGTGAAAACTGAAAAACAAAGAGTGAAAAC
GATCAGAAACACAGATTTGAGAATTTGAAAGCAAAAAACAATTCGGATGAAGAAAAAACAATGGA
AGTGAAAGAGGTTTACTTTATAATG
Found at i:34279 original size:20 final size:20
Alignment explanation
Indices: 34251--34292 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
34241 AAGGTAAATA
34251 TAAAAATATTTTAATA-TTTT
1 TAAAAATATTTT-ATACTTTT
*
34271 TAAATATATTTTATACTTTT
1 TAAAAATATTTTATACTTTT
34291 TA
1 TA
34293 GAATTCGAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 3 0.15
20 17 0.85
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (20 bp):
TAAAAATATTTTATACTTTT
Found at i:37289 original size:30 final size:30
Alignment explanation
Indices: 37235--37297 Score: 76
Period size: 32 Copynumber: 2.1 Consensus size: 30
37225 TGACGAAAAT
* *
37235 ATGAGAGAATAAGAAACGTAAATAACTAAGTA
1 ATGAGAAAATAAGAAAAGTAAATAA-TAA-TA
37267 ATGAGAAAATAA-AAAAGT-AATAATAATA
1 ATGAGAAAATAAGAAAAGTAAATAATAATA
37295 ATG
1 ATG
37298 CAATGATAGT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 5 0.17
29 3 0.10
30 5 0.17
31 5 0.17
32 11 0.38
ACGTcount: A:0.60, C:0.03, G:0.16, T:0.21
Consensus pattern (30 bp):
ATGAGAAAATAAGAAAAGTAAATAATAATA
Found at i:38019 original size:27 final size:27
Alignment explanation
Indices: 37971--38023 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
37961 TGAATATATA
* * *
37971 TAAAATATATGTAAGTATTAATTAAAAC
1 TAAAATATATCTAAATAATAA-TAAAAC
37999 TAAAA-ATATCTAAATAATAATAAAA
1 TAAAATATATCTAAATAATAATAAAA
38024 TATGCTAATG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 5 0.23
27 12 0.55
28 5 0.23
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.32
Consensus pattern (27 bp):
TAAAATATATCTAAATAATAATAAAAC
Found at i:39394 original size:45 final size:46
Alignment explanation
Indices: 39327--39450 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
39317 CATATGACCT
*
39327 CTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCT-AGGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
39370 CTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
39416 CTTATCACTTTATCACTTGATCAGATAAGTGTAGC
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
39451 CACTTATCAC
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 8 0.11
44 4 0.05
45 21 0.28
46 41 0.55
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (46 bp):
CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
Found at i:39454 original size:37 final size:37
Alignment explanation
Indices: 39412--39567 Score: 276
Period size: 37 Copynumber: 4.2 Consensus size: 37
39402 AGCTGAAGCT
* **
39412 ACCACTTATCACTTTATCACTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
*
39449 GCCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
39486 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
39523 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
39560 ACCACTTA
1 ACCACTTA
39568 GTTGCAAGTA
Statistics
Matches: 114, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 114 1.00
ACGTcount: A:0.28, C:0.21, G:0.13, T:0.38
Consensus pattern (37 bp):
ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
Found at i:43738 original size:17 final size:18
Alignment explanation
Indices: 43716--43751 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
43706 GGTACATTAC
43716 AATTGATTTAAATT-AAA
1 AATTGATTTAAATTCAAA
43733 AATTGATTTAAATTCAAA
1 AATTGATTTAAATTCAAA
43751 A
1 A
43752 CAAATTTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.53, C:0.03, G:0.06, T:0.39
Consensus pattern (18 bp):
AATTGATTTAAATTCAAA
Found at i:49763 original size:19 final size:19
Alignment explanation
Indices: 49739--49775 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
49729 AGAAGATTAT
49739 CAATTGTGACAAATAAAAG
1 CAATTGTGACAAATAAAAG
49758 CAATTGTGACAAATAAAA
1 CAATTGTGACAAATAAAA
49776 TCGAATGGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.54, C:0.11, G:0.14, T:0.22
Consensus pattern (19 bp):
CAATTGTGACAAATAAAAG
Found at i:50488 original size:158 final size:155
Alignment explanation
Indices: 50169--50493 Score: 384
Period size: 158 Copynumber: 2.1 Consensus size: 155
50159 AAGAGAGTTT
*
50169 TTTTTTTCCCCTTAACTGAGACTGAATACAAGAAAATGTGAAAACTGAAAAACAAAGAGTGAAAA
1 TTTTTTT-CCCTTAACTGAGACAGAATACAAGAAAATGTGAAAACTGAAAAACAAAGAGTGAAAA
*
50234 CGATCAGAAACACAGATTTGAGAATTTGAAAGCAAAAAACAATTCGGATGATGAAAAAACAATGG
65 CGATCAGAAACACAGATTTGAGAATTTGAAAGCAAAAAACAATTCGGATGAAGAAAAAACAATGG
** ** * ** *
50299 ATTTGAAAGCAGGTTTTTTTTTTGTTT
130 AAGTGAAAG-AGGTTTACTTTATAATG
* * *
50326 TTTTTTTCCCTTAATTGACAGACAGAATACAAGAAAATGTGAAAATTGAAAAACAAAGAGTGGAA
1 TTTTTTTCCCTTAACTG--AGACAGAATACAAGAAAATGTGAAAACTGAAAAACAAAGAGTGAAA
* * * *
50391 ATGATCAGAAACACAGATTTGAGAATTTGAAAGCAAAAAAGACTTTTGGATGAAGAAAAAACAAT
64 ACGATCAGAAACACAGATTTGAGAATTTGAAAGCAAAAAACA-ATTCGGATGAAGAAAAAACAAT
***
50456 GGCAAGT-CTTG-GGTTTAACTTTATAATG
128 GG-AAGTGAAAGAGGTTT-ACTTTATAATG
50484 TTTTTCTTCC
1 TTTTT-TTCC
50494 TCATTAGTTT
Statistics
Matches: 142, Mismatches: 20, Indels: 10
0.83 0.12 0.06
Matches are distributed among these distances:
156 9 0.06
157 12 0.08
158 93 0.65
159 26 0.18
160 2 0.01
ACGTcount: A:0.42, C:0.11, G:0.18, T:0.29
Consensus pattern (155 bp):
TTTTTTTCCCTTAACTGAGACAGAATACAAGAAAATGTGAAAACTGAAAAACAAAGAGTGAAAAC
GATCAGAAACACAGATTTGAGAATTTGAAAGCAAAAAACAATTCGGATGAAGAAAAAACAATGGA
AGTGAAAGAGGTTTACTTTATAATG
Found at i:52984 original size:14 final size:14
Alignment explanation
Indices: 52965--53014 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
52955 GAGTTGATTT
* *
52965 TTGAAAAATATAAA
1 TTGAAAAACAGAAA
52979 TTGAAAAAACAGAAA
1 TTG-AAAAACAGAAA
*
52994 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
53008 TT-AAAAA
1 TTGAAAAA
53015 GACCTCAGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
13 4 0.13
14 15 0.48
15 12 0.39
ACGTcount: A:0.64, C:0.04, G:0.12, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:54699 original size:12 final size:12
Alignment explanation
Indices: 54679--54714 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
54669 TGGGATATGC
*
54679 AATGTATGAATG
1 AATGCATGAATG
54691 AATGCATGAATG
1 AATGCATGAATG
54703 AATGCATGAATG
1 AATGCATGAATG
54715 TCAAATGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:58800 original size:22 final size:22
Alignment explanation
Indices: 58773--58828 Score: 112
Period size: 22 Copynumber: 2.5 Consensus size: 22
58763 CGGGGTGACA
58773 ACACAGGCGTGTCACCTAGGCC
1 ACACAGGCGTGTCACCTAGGCC
58795 ACACAGGCGTGTCACCTAGGCC
1 ACACAGGCGTGTCACCTAGGCC
58817 ACACAGGCGTGT
1 ACACAGGCGTGT
58829 GGTACTGTTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.23, C:0.34, G:0.29, T:0.14
Consensus pattern (22 bp):
ACACAGGCGTGTCACCTAGGCC
Found at i:70855 original size:6 final size:6
Alignment explanation
Indices: 70846--70888 Score: 79
Period size: 6 Copynumber: 7.3 Consensus size: 6
70836 TGTCTTTAGA
70846 TTTATT TTTATT TTTATT TTTATT TTTATT TTTA-T TTTATT TT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TT
70889 ATCCTTATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
5 5 0.14
6 31 0.86
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTATT
Found at i:79229 original size:136 final size:136
Alignment explanation
Indices: 78985--79258 Score: 548
Period size: 136 Copynumber: 2.0 Consensus size: 136
78975 TAAACAAAAA
78985 TAACTATTTTAATAGTTTACTCTAAAAATTAATAATAGAATTTATCCATAGATAAGAGTTCGATA
1 TAACTATTTTAATAGTTTACTCTAAAAATTAATAATAGAATTTATCCATAGATAAGAGTTCGATA
79050 AAGTCTTACTTTTTGGAGTATTTTCTTTACAATATCCTTAATAAATTAGTGGAAGATAAAGACAT
66 AAGTCTTACTTTTTGGAGTATTTTCTTTACAATATCCTTAATAAATTAGTGGAAGATAAAGACAT
79115 CCTCTT
131 CCTCTT
79121 TAACTATTTTAATAGTTTACTCTAAAAATTAATAATAGAATTTATCCATAGATAAGAGTTCGATA
1 TAACTATTTTAATAGTTTACTCTAAAAATTAATAATAGAATTTATCCATAGATAAGAGTTCGATA
79186 AAGTCTTACTTTTTGGAGTATTTTCTTTACAATATCCTTAATAAATTAGTGGAAGATAAAGACAT
66 AAGTCTTACTTTTTGGAGTATTTTCTTTACAATATCCTTAATAAATTAGTGGAAGATAAAGACAT
79251 CCTCTT
131 CCTCTT
79257 TA
1 TA
79259 TCTTTATTTG
Statistics
Matches: 138, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
136 138 1.00
ACGTcount: A:0.38, C:0.12, G:0.11, T:0.40
Consensus pattern (136 bp):
TAACTATTTTAATAGTTTACTCTAAAAATTAATAATAGAATTTATCCATAGATAAGAGTTCGATA
AAGTCTTACTTTTTGGAGTATTTTCTTTACAATATCCTTAATAAATTAGTGGAAGATAAAGACAT
CCTCTT
Found at i:79759 original size:2 final size:2
Alignment explanation
Indices: 79749--79779 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
79739 ATTTAGTGTG
*
79749 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
79780 TAAAAATAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:80977 original size:15 final size:15
Alignment explanation
Indices: 80953--81000 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
80943 ACGACCATTT
*
80953 AAAATTTTAAAATTCA
1 AAAATATTAAAATT-A
80969 AAAA-ATTAAAAATTA
1 AAAATATT-AAAATTA
*
80984 AAAATAATAAAATTA
1 AAAATATTAAAATTA
80999 AA
1 AA
81001 GAAAAACTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
15 16 0.57
16 12 0.43
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (15 bp):
AAAATATTAAAATTA
Found at i:81377 original size:20 final size:20
Alignment explanation
Indices: 81334--81378 Score: 58
Period size: 19 Copynumber: 2.3 Consensus size: 20
81324 TTTCATTTTT
*
81334 TATTTTTTTAATATTTTCTG
1 TATTTTTTGAATATTTTCTG
81354 -ATTTTTTGAA-ATTCTTCTG
1 TATTTTTTGAATATT-TTCTG
81373 TATTTT
1 TATTTT
81379 ATCTATTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 3 0.14
19 14 0.64
20 5 0.23
ACGTcount: A:0.20, C:0.07, G:0.07, T:0.67
Consensus pattern (20 bp):
TATTTTTTGAATATTTTCTG
Found at i:85653 original size:21 final size:23
Alignment explanation
Indices: 85627--85669 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 23
85617 AGATTTTAAT
85627 AATTAAAAAT-AT-TAAATATTA
1 AATTAAAAATAATATAAATATTA
85648 AATTAAAAATAATATAAATATT
1 AATTAAAAATAATATAAATATT
85670 TCAAAAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 10 0.50
22 2 0.10
23 8 0.40
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (23 bp):
AATTAAAAATAATATAAATATTA
Found at i:86821 original size:3 final size:3
Alignment explanation
Indices: 86813--86920 Score: 216
Period size: 3 Copynumber: 36.0 Consensus size: 3
86803 ATATAGATAG
86813 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
86861 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
86909 TAA TAA TAA TAA
1 TAA TAA TAA TAA
86921 CTAAATTGAG
Statistics
Matches: 105, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 105 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:87689 original size:20 final size:20
Alignment explanation
Indices: 87660--87702 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
87650 GTTCCTGCTC
* * *
87660 TGCTTTGTTTCTGTCTTGTT
1 TGCTTCGTTTCTATCTCGTT
87680 TGCTTCGTTTCTATCTCGTT
1 TGCTTCGTTTCTATCTCGTT
87700 TGC
1 TGC
87703 AGGCGTTGAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.02, C:0.21, G:0.19, T:0.58
Consensus pattern (20 bp):
TGCTTCGTTTCTATCTCGTT
Found at i:100287 original size:350 final size:341
Alignment explanation
Indices: 99628--100287 Score: 900
Period size: 350 Copynumber: 1.9 Consensus size: 341
99618 TACTTATATT
*
99628 ACTGTTACAAACTCTTAGGCTTAATTCTATGATTTTATTTTATTTTTTCTTTATTTAGACTTGTT
1 ACTGTTACAAACTCTTAGGCTTAATTCTAGGATTTTATTTTATTTTTTCTTTATTTAGACTTGTT
99693 GTGAATATAAAAATAGATAAATCATGTTAGAGTTTATATTAATGCCTACTTCTTTACCTAGTTAA
66 GTGAATATAAAAATAGATAAATCATGTTAGAGTTTATATTAATGCCTACTTCTTTACCTAGTTAA
* *
99758 ACTCTTGTAACTTGTACAATGTTCCCATGAGTAAATCTATGAGGTTTTCTTTCAAATTCTACTTT
131 ACTCTTGTAACTTGTACAATGTTCCCATGAGTAAATCTATAAGGTTTTCTCTCAAATTCTACTTT
** *
99823 TGTTACATGGAATCAGAGCTAAGGGATCGATTTTAGAGTATAAGTCTCATCGAATTAATCGCAAA
196 CATTACATGGAATCAGAGCTAAGGGATCAATTTTAGAGTATAAGTCTCATCGAATTAATCGCAAA
* **
99888 ATAGTGAGTTTTTAGGGTATTTTCGTTAACTACCAAGGGTTGTCCTTTTTATCTCACCACCAGCC
261 ATAGCGAGTTTAGAGGGTATTTTCGTTAACTACCAAGGGTTGTCCTTTTTATCTCACCACCAGCC
99953 TAGGGAGGTGCGCAAG
326 TAGGGAGGTGCGCAAG
*
99969 ACTGTTACAAACTCTTAGGCTTAATTCTAGGATTTTATTTTCTTTTCTT-TTCGTATTTAGACTT
1 ACTGTTACAAACTCTTAGGCTTAATTCTAGGATTTTATTTTATTTT-TTCTT--TATTTAGACTT
* * * * **
100033 GTTGTGAATA-AAATATTAGATATATCATGTTCGGGTTTATATTAACT-TTTACTTCTTT-CTCT
63 GTTGTGAATATAAA-AATAGATAAATCATGTTAGAGTTTATATTAA-TGCCTACTTCTTTAC-CT
* *
100095 AGTTAAACTCTTGTAACTTGTATATATGTAAATATTCCCATGTGTAAATCTATAAGGTTTTCTCT
125 AGTTAAACTCTTGTAACTTGTACA-ATG------TTCCCATGAGTAAATCTATAAGGTTTTCTCT
* * * * * *
100160 CAAATTCTACTTTCATTACATGGTA-CTGGAGCTAAGGGATCAATTTTAGAGTCTGAGTTTCATT
183 CAAATTCTACTTTCATTACATGGAATC-AGAGCTAAGGGATCAATTTTAGAGTATAAGTCTCATC
* * *
100224 GAATTTATCGCAAAATAGCGAGTTCTAGAGGGTATTTTTGTTGACTACCAAGGGTTG-CCTTTTT
247 GAATTAATCGCAAAATAGCGAGTT-TAGAGGGTATTTTCGTTAACTACCAAGGGTTGTCCTTTTT
100288 TAATCTCATC
Statistics
Matches: 277, Mismatches: 27, Indels: 21
0.85 0.08 0.06
Matches are distributed among these distances:
341 46 0.17
342 6 0.02
343 82 0.30
344 4 0.01
349 1 0.00
350 110 0.40
351 28 0.10
ACGTcount: A:0.28, C:0.15, G:0.16, T:0.42
Consensus pattern (341 bp):
ACTGTTACAAACTCTTAGGCTTAATTCTAGGATTTTATTTTATTTTTTCTTTATTTAGACTTGTT
GTGAATATAAAAATAGATAAATCATGTTAGAGTTTATATTAATGCCTACTTCTTTACCTAGTTAA
ACTCTTGTAACTTGTACAATGTTCCCATGAGTAAATCTATAAGGTTTTCTCTCAAATTCTACTTT
CATTACATGGAATCAGAGCTAAGGGATCAATTTTAGAGTATAAGTCTCATCGAATTAATCGCAAA
ATAGCGAGTTTAGAGGGTATTTTCGTTAACTACCAAGGGTTGTCCTTTTTATCTCACCACCAGCC
TAGGGAGGTGCGCAAG
Found at i:102174 original size:42 final size:42
Alignment explanation
Indices: 102127--102215 Score: 151
Period size: 42 Copynumber: 2.1 Consensus size: 42
102117 TCCTAATTGG
*
102127 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAATATAAAA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAAGATAAAA
*
102169 GAAAATAGTTCTCTTATTCTAATAAACTACTAAAAGATAAAA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAAGATAAAA
*
102211 TAAAA
1 GAAAA
102216 ATATTTCTAG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.52, C:0.12, G:0.06, T:0.30
Consensus pattern (42 bp):
GAAAATAGTTCCCTTATTCTAATAAACTACTAAAAGATAAAA
Found at i:102235 original size:43 final size:42
Alignment explanation
Indices: 102142--102237 Score: 113
Period size: 42 Copynumber: 2.3 Consensus size: 42
102132 TAGTTCCCTT
* * ***
102142 ATTCTAATAAACTACTAAAATATAAAAGAAAATAGTTCTCTT
1 ATTCTAATAAACTACTAAAAGATAAAAAAAAATAGTTCTAGA
*
102184 ATTCTAATAAACTACTAAAAGATAAAATAAAAATATTTCTAGA
1 ATTCTAATAAACTACTAAAAGATAAAA-AAAAATAGTTCTAGA
102227 ATAT-TAATAAA
1 AT-TCTAATAAA
102238 ACTTGTCTAC
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
42 26 0.57
43 19 0.41
44 1 0.02
ACGTcount: A:0.54, C:0.09, G:0.04, T:0.32
Consensus pattern (42 bp):
ATTCTAATAAACTACTAAAAGATAAAAAAAAATAGTTCTAGA
Found at i:102265 original size:19 final size:18
Alignment explanation
Indices: 102243--102279 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
102233 ATAAAACTTG
102243 TCTACCTAAATAAGATTTA
1 TCTACCTAAATAA-ATTTA
102262 TCTACCTAAATAAATTTA
1 TCTACCTAAATAAATTTA
102280 AAATATATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.43, C:0.16, G:0.03, T:0.38
Consensus pattern (18 bp):
TCTACCTAAATAAATTTA
Found at i:105884 original size:42 final size:42
Alignment explanation
Indices: 105825--105913 Score: 142
Period size: 42 Copynumber: 2.1 Consensus size: 42
105815 TCCTAATTGG
*
105825 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAATATAAAA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAAGATAAAA
* *
105867 GAAAATAGTTCTCTTATTCTAATAAATTACTAAAAGATAAAA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAAGATAAAA
*
105909 TAAAA
1 GAAAA
105914 ATATTCCTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.52, C:0.11, G:0.06, T:0.31
Consensus pattern (42 bp):
GAAAATAGTTCCCTTATTCTAATAAACTACTAAAAGATAAAA
Found at i:105960 original size:19 final size:18
Alignment explanation
Indices: 105938--105977 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
105928 TTAATAAAAC
105938 TTATCTACCTAAATAAGAT
1 TTATCTACCTAAATAA-AT
105957 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
105975 TTA
1 TTA
105978 AAATATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:123898 original size:19 final size:20
Alignment explanation
Indices: 123874--123911 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
123864 TAATTAGATT
123874 TTAATTAA-GTAAATTTAGC
1 TTAATTAAGGTAAATTTAGC
*
123893 TTAATTAAGGTTAATTTAG
1 TTAATTAAGGTAAATTTAG
123912 TGAAAGGACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.39, C:0.03, G:0.13, T:0.45
Consensus pattern (20 bp):
TTAATTAAGGTAAATTTAGC
Found at i:131302 original size:11 final size:11
Alignment explanation
Indices: 131286--131314 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
131276 GTAATGTTAA
131286 AATATATACAT
1 AATATATACAT
131297 AATATATACAT
1 AATATATACAT
131308 -ATATATA
1 AATATATA
131315 AAAAATATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 7 0.39
11 11 0.61
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (11 bp):
AATATATACAT
Found at i:131850 original size:22 final size:23
Alignment explanation
Indices: 131824--131896 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 23
131814 GTACAAAGGG
131824 TATATA-ACTAATAATAT-TAAAA
1 TATATACA-TAATAATATATAAAA
*
131846 TATATACATAATAGTATATAAAA
1 TATATACATAATAATATATAAAA
* *
131869 -A-AAACATAATACTA-A-AAATA
1 TATATACATAATAATATATAAA-A
131889 TATATACA
1 TATATACA
131897 CATAATACAT
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
19 3 0.07
20 2 0.05
21 12 0.29
22 19 0.45
23 6 0.14
ACGTcount: A:0.60, C:0.07, G:0.01, T:0.32
Consensus pattern (23 bp):
TATATACATAATAATATATAAAA
Found at i:132031 original size:3 final size:3
Alignment explanation
Indices: 132023--132156 Score: 259
Period size: 3 Copynumber: 44.7 Consensus size: 3
132013 TTACTAATGT
*
132023 TAA TAA TAA TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
132071 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
132119 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
132157 TTGGAATGCA
Statistics
Matches: 129, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
3 129 1.00
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:139961 original size:3 final size:3
Alignment explanation
Indices: 139953--140078 Score: 252
Period size: 3 Copynumber: 42.0 Consensus size: 3
139943 ATGCATTTGC
139953 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
140001 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
140049 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
140079 AATTGTCTTG
Statistics
Matches: 123, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 123 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:147968 original size:15 final size:15
Alignment explanation
Indices: 147944--147993 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
147934 TTGGCCTAAC
147944 ATCAGGAGCTTTGGA
1 ATCAGGAGCTTTGGA
* **
147959 ATCAGCAGCTTCAGA
1 ATCAGGAGCTTTGGA
* *
147974 TTCAGGAACTTTGGA
1 ATCAGGAGCTTTGGA
147989 ATCAG
1 ATCAG
147994 AAGGGGCTGG
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (15 bp):
ATCAGGAGCTTTGGA
Found at i:148031 original size:6 final size:6
Alignment explanation
Indices: 148017--148111 Score: 91
Period size: 6 Copynumber: 15.8 Consensus size: 6
148007 CAGATTTGGG
* * * * * * *
148017 GATGAT GATGGT GATGAT GATGGA GATGGA GATGGG GATGAT GATGGG
1 GATGGT GATGGT GATGGT GATGGT GATGGT GATGGT GATGGT GATGGT
* * * *
148065 GATGAT GATGGT GATGAT GATGGG GATGAT GATGGT GATGGT GATGG
1 GATGGT GATGGT GATGGT GATGGT GATGGT GATGGT GATGGT GATGG
148112 GCCTAAGTCC
Statistics
Matches: 71, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
6 71 1.00
ACGTcount: A:0.25, C:0.00, G:0.47, T:0.27
Consensus pattern (6 bp):
GATGGT
Found at i:148032 original size:12 final size:12
Alignment explanation
Indices: 148013--148112 Score: 139
Period size: 12 Copynumber: 8.3 Consensus size: 12
148003 GGGCCAGATT
148013 TGGGGATGATGA
1 TGGGGATGATGA
*
148025 TGGTGATGATGA
1 TGGGGATGATGA
*
148037 TGGAGATGGA-GA
1 TGGGGAT-GATGA
148049 TGGGGATGATGA
1 TGGGGATGATGA
148061 TGGGGATGATGA
1 TGGGGATGATGA
*
148073 TGGTGATGATGA
1 TGGGGATGATGA
148085 TGGGGATGATGA
1 TGGGGATGATGA
* *
148097 TGGTGATGGTGA
1 TGGGGATGATGA
148109 TGGG
1 TGGG
148113 CCTAAGTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
11 2 0.03
12 74 0.95
13 2 0.03
ACGTcount: A:0.24, C:0.00, G:0.49, T:0.27
Consensus pattern (12 bp):
TGGGGATGATGA
Found at i:148050 original size:24 final size:24
Alignment explanation
Indices: 148013--148112 Score: 157
Period size: 24 Copynumber: 4.2 Consensus size: 24
148003 GGGCCAGATT
148013 TGGGGATGATGATGGTGATGATGA
1 TGGGGATGATGATGGTGATGATGA
* *
148037 TGGAGATGGA-GATGGGGATGATGA
1 TGGGGAT-GATGATGGTGATGATGA
148061 TGGGGATGATGATGGTGATGATGA
1 TGGGGATGATGATGGTGATGATGA
*
148085 TGGGGATGATGATGGTGATGGTGA
1 TGGGGATGATGATGGTGATGATGA
148109 TGGG
1 TGGG
148113 CCTAAGTCCG
Statistics
Matches: 69, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
23 2 0.03
24 65 0.94
25 2 0.03
ACGTcount: A:0.24, C:0.00, G:0.49, T:0.27
Consensus pattern (24 bp):
TGGGGATGATGATGGTGATGATGA
Found at i:152973 original size:30 final size:28
Alignment explanation
Indices: 152937--153003 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 28
152927 CAATTGGACC
152937 TTAAATTTTAA-AATCTAAAAATAAAAAAAA
1 TTAAATTTTAAGAA--TAAAAAT-AAAAAAA
* *
152967 TTAAATTCTTAAGAATAAATATAAAATAA
1 TTAAATT-TTAAGAATAAAAATAAAAAAA
152996 TTAAATTT
1 TTAAATTT
153004 CAATTTTGGG
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
28 1 0.03
29 13 0.39
30 13 0.39
31 4 0.12
32 2 0.06
ACGTcount: A:0.60, C:0.03, G:0.01, T:0.36
Consensus pattern (28 bp):
TTAAATTTTAAGAATAAAAATAAAAAAA
Found at i:169824 original size:24 final size:24
Alignment explanation
Indices: 169791--169849 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 24
169781 ATCTCTTAAG
*
169791 ATTTAGTAGAACAATATA-TTTAGC
1 ATTTATTAGAACAATATATTTTA-C
*
169815 ATTTATTAGAATAATATATTTTAC
1 ATTTATTAGAACAATATATTTTAC
*
169839 ATTAATTAGAA
1 ATTTATTAGAA
169850 TTAGGCTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
24 27 0.87
25 4 0.13
ACGTcount: A:0.44, C:0.05, G:0.08, T:0.42
Consensus pattern (24 bp):
ATTTATTAGAACAATATATTTTAC
Found at i:170255 original size:20 final size:20
Alignment explanation
Indices: 170215--170254 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
170205 TGTCACTAAA
*
170215 TAATCAAATTAAATTTATTT
1 TAATCAAATTAAATTAATTT
170235 TAATCAAA-TAAATTAATTT
1 TAATCAAATTAAATTAATTT
170254 T
1 T
170255 TTGACAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (20 bp):
TAATCAAATTAAATTAATTT
Found at i:175314 original size:32 final size:32
Alignment explanation
Indices: 175278--175342 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
175268 TGTATGCATT
175278 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
175310 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
175342 T
1 T
175343 GGTAAGCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:176852 original size:26 final size:26
Alignment explanation
Indices: 176823--176875 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
176813 TTTACAATTT
176823 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* * *
176849 TACCCTTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
176875 T
1 T
176876 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:184148 original size:411 final size:410
Alignment explanation
Indices: 183382--184519 Score: 1663
Period size: 411 Copynumber: 2.8 Consensus size: 410
183372 AAATCTGCTT
*
183382 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATTATCTTAGATTTGCTTCATA-GTAAGCA
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCA-ACGTAAGCA
*
183446 CGTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCT
65 CGTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCT
* * * ** * * * *
183511 TGGATCTTGCTTCAGTCTAATCGTCTGAAAATCAGATCTGCCATGTTTCTACTCTCCGTCGAAGT
130 TGGATC-TGCTTCAGTATAAACATCTGAAGGTCAGATCTGCTATGTGTCTGCCCTCCGTCGAAGT
183576 GGAGATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTT
194 GGAGATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTT
*
183641 CAACGTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCATAAGGATG
259 CAACGTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATG
* * *
183706 CCAAACCATCTTGGATCTACTTCAGTATAAACATCTGAAGTTTGGATCTTCTATGTGTCTGCCCT
324 CCAAACCATCTTGGATCTACTTCAGTATAAACATCTGAAGGTTGAATCTGCTATGTGTCTGCCCT
*
183771 CTGTCGAAGTGGAGATGCCAGA
389 CCGTCGAAGTGGAGATGCCAGA
* * * *
183793 CTTTGATTTGTTCTCTGACAATAAAGAGATGCCAAATCATCTTAGACTTGTTTCAACGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
183858 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * *
183923 GGATCTACTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCTGTCGAAGTGG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTCAGATCTGCTATGTGTCTGCCCTCCGTCGAAGTGG
* *
183988 AGATGCCAGACTTCGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGATTTGTTTCA
196 AGATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCA
184053 ACGTAAGCACGTGAAAGCCAAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGC
261 ACGTAAGCACGTGAAAGCC-AAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGC
184118 CAAACCATCTTGGATCTACTTCAGTATAAACATCTGAAGGTTGAATCTGCTATGTGTCTGCCCTC
325 CAAACCATCTTGGATCTACTTCAGTATAAACATCTGAAGGTTGAATCTGCTATGTGTCTGCCCTC
184183 CGTCGAAGTGGAGATGCCAGA
390 CGTCGAAGTGGAGATGCCAGA
*
184204 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
* * ** * * * *
184269 GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCCGCCGAATACAGAAAGAT---AAGATCT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTG--TAA-GCACAAGGATGCCAA-A-C-
** * * * * *
184331 GTCATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTGAGATCTGTTATGCGTCTGCCTTCCAT
125 --CATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTCAGATCTGCTATGTGTCTGCCCTCCGT
* * * * * *
184396 CAAAGTGGAAATGCCAGAGTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGAC
188 CGAAGTGGAGATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGAT
* * * * * * *
184461 TTGCTTCATCGTAAACACGTGAAAGCCAAATCAGTTATTTCTTTGATCTGCTCCCTGTA
253 TTGCTTCAACGTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTA
184520 GAATACAGAG
Statistics
Matches: 655, Mismatches: 62, Indels: 16
0.89 0.08 0.02
Matches are distributed among these distances:
410 131 0.20
411 350 0.53
412 1 0.00
413 3 0.00
414 7 0.01
415 27 0.04
416 136 0.21
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (410 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGTATAAACATCTGAAGGTCAGATCTGCTATGTGTCTGCCCTCCGTCGAAGTGG
AGATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCA
ACGTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCC
AAACCATCTTGGATCTACTTCAGTATAAACATCTGAAGGTTGAATCTGCTATGTGTCTGCCCTCC
GTCGAAGTGGAGATGCCAGA
Found at i:184190 original size:206 final size:206
Alignment explanation
Indices: 183382--184519 Score: 1637
Period size: 205 Copynumber: 5.5 Consensus size: 206
183372 AAATCTGCTT
*
183382 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATTATCTTAGATTTGCTTCATA-GTAAGCA
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCA-ACGTAAGCA
*
183446 CGTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCT
65 CGTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCT
* * * * ** * * * * *
183511 TGGATCTTGCTTCAGTCTAATCGTCTGAA-AATCAGATCTGCCATGTTTCTACTCTCCGTCGAAG
130 TGGATC-TACTTCAGTATAAACATCTGAAGGTTGAGATCTGCTATGTGTCTGCCCTCCGTCGAAG
183575 TGGAGATGCCAGA
194 TGGAGATGCCAGA
183588 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
*
183653 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCATAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * *
183718 GGATCTACTTCAGTATAAACATCTGAAGTTTG-GATCTTCTATGTGTCTGCCCTCTGTCGAAGTG
131 GGATCTACTTCAGTATAAACATCTGAAGGTTGAGATCTGCTATGTGTCTGCCCTCCGTCGAAGTG
183782 GAGATGCCAGA
196 GAGATGCCAGA
* * * *
183793 CTTTGATTTGTTCTCTGACAATAAAGAGATGCCAAATCATCTTAGACTTGTTTCAACGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
183858 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
183923 GGATCTACTTCAGTATAAACATCTGAAGGTT-AGATCTGCTATGTGTCTGCCCTCTGTCGAAGTG
131 GGATCTACTTCAGTATAAACATCTGAAGGTTGAGATCTGCTATGTGTCTGCCCTCCGTCGAAGTG
183987 GAGATGCCAGA
196 GAGATGCCAGA
* *
183998 CTTCGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGATTTGTTTCAACGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
184063 GTGAAAGCCAAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCT
66 GTGAAAGCC-AAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCT
184128 TGGATCTACTTCAGTATAAACATCTGAAGGTTGA-ATCTGCTATGTGTCTGCCCTCCGTCGAAGT
130 TGGATCTACTTCAGTATAAACATCTGAAGGTTGAGATCTGCTATGTGTCTGCCCTCCGTCGAAGT
184192 GGAGATGCCAGA
195 GGAGATGCCAGA
*
184204 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
* * ** * * * *
184269 GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCCGCCGAATACAGAAAGAT---AAGATCT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTG--TAA-GCACAAGGATGCCAA-A-C-
* ** * * * *
184331 GTCATCTTGGATCTGCTTCAGCGTAAACATCTGAAGG-TGAGATCTGTTATGCGTCTGCCTTCCA
125 --CATCTTGGATCTACTTCAGTATAAACATCTGAAGGTTGAGATCTGCTATGTGTCTGCCCTCCG
* *
184395 TCAAAGTGGAAATGCCAGA
188 TCGAAGTGGAGATGCCAGA
* * * * * *
184414 GTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGACTTGCTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
* * * * *
184479 GTGAAAGCCAAATCAGTTATTTCTTTGATCTGCTCCCTGTA
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTA
184520 GAATACAGAG
Statistics
Matches: 860, Mismatches: 58, Indels: 26
0.91 0.06 0.03
Matches are distributed among these distances:
205 351 0.41
206 331 0.38
207 4 0.00
208 8 0.01
209 3 0.00
210 163 0.19
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (206 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTACTTCAGTATAAACATCTGAAGGTTGAGATCTGCTATGTGTCTGCCCTCCGTCGAAGTG
GAGATGCCAGA
Found at i:193172 original size:26 final size:26
Alignment explanation
Indices: 193140--193247 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
193130 TGGTACAAAT
*
193140 TGATAATGGGTTAGGTAAATGTTACA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
193166 CGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
193192 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
**
193218 TGATAATGATTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
193244 TGAT
1 TGAT
193248 GGGCATTTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:198617 original size:111 final size:111
Alignment explanation
Indices: 198412--198632 Score: 397
Period size: 111 Copynumber: 2.0 Consensus size: 111
198402 TTAGGTGTGG
198412 TTGGATCACCTTTAAAACATTTTGTTTTAAAATCATTAGTTTTGGTCTACGAAATCAGAAAACGG
1 TTGGATCACCTTTAAAACATTTTGTTTTAAAATCATTAGTTTTGGTCTACGAAATCAGAAAACGG
* * *
198477 GTTCGGGAGCCGGTTACGTATGAGGAAGGGTTAGCACCCTCGTAAT
66 GTTCGGGAGCCGGTTACATACGAGAAAGGGTTAGCACCCTCGTAAT
*
198523 TTGGATCACCTTTAAAACATTTTGTTTTAAAATCATTAGTTTTGGTCTACGAAATCAGAAAATGG
1 TTGGATCACCTTTAAAACATTTTGTTTTAAAATCATTAGTTTTGGTCTACGAAATCAGAAAACGG
*
198588 GTTCGGGATCCGGTTACATACGAGAAAGGGTTAGCACCCTCGTAA
66 GTTCGGGAGCCGGTTACATACGAGAAAGGGTTAGCACCCTCGTAA
198633 CGCCCAAAAA
Statistics
Matches: 105, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
111 105 1.00
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (111 bp):
TTGGATCACCTTTAAAACATTTTGTTTTAAAATCATTAGTTTTGGTCTACGAAATCAGAAAACGG
GTTCGGGAGCCGGTTACATACGAGAAAGGGTTAGCACCCTCGTAAT
Found at i:207619 original size:6 final size:6
Alignment explanation
Indices: 207608--207640 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
207598 AAAGGGGAGA
207608 TCAAAG TCAAAG TCAAAG TCAAAG TCAAAG TCA
1 TCAAAG TCAAAG TCAAAG TCAAAG TCAAAG TCA
207641 TGAGAAAGGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.48, C:0.18, G:0.15, T:0.18
Consensus pattern (6 bp):
TCAAAG
Found at i:209096 original size:21 final size:21
Alignment explanation
Indices: 209070--209110 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
209060 AGACGAGCAA
* *
209070 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
209091 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
209111 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:219523 original size:131 final size:131
Alignment explanation
Indices: 219289--219546 Score: 401
Period size: 131 Copynumber: 2.0 Consensus size: 131
219279 CTATTCATTC
* * ** *
219289 AAAAATTCTTTAAAACGAAGGCAATGTTCATTGTTTGGCAATTCGGGGAATCGTGCCCTATTGTG
1 AAAAATTCTTCAAAACAAAGGCAATGTTCATTGTTTGAAAATTCGGGGAATCGTGCCCTATCGTG
* * *
219354 CCGGGTTGCAATTTCCCGTTTGTTCAAAATAATTGAATATTCCTTTGGAATTTCACTCATGTCTT
66 CCGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTCTT
219419 T
131 T
* *
219420 AAAAATTCTTCAAAACAAAGGTAATGTTCGA-TGTTTGAAAATTCGGGGAGTCGTGCCCTATCGT
1 AAAAATTCTTCAAAACAAAGGCAATGTTC-ATTGTTTGAAAATTCGGGGAATCGTGCCCTATCGT
*
219484 GCTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGT
65 GCCGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGT
219547 TCTCCAAATC
Statistics
Matches: 115, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
131 114 0.99
132 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.36
Consensus pattern (131 bp):
AAAAATTCTTCAAAACAAAGGCAATGTTCATTGTTTGAAAATTCGGGGAATCGTGCCCTATCGTG
CCGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTCTT
T
Found at i:220667 original size:13 final size:13
Alignment explanation
Indices: 220649--220673 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
220639 ATTGGGCTAT
220649 GTATATTATTGTG
1 GTATATTATTGTG
220662 GTATATTATTGT
1 GTATATTATTGT
220674 CTGTATTGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.20, T:0.56
Consensus pattern (13 bp):
GTATATTATTGTG
Found at i:221240 original size:130 final size:129
Alignment explanation
Indices: 221001--221332 Score: 451
Period size: 130 Copynumber: 2.6 Consensus size: 129
220991 ATAATTATTC
*
221001 GTTTAAAAAA-TCTTTAAAACGAAGGCAATATTCGATGTTTGGAAATTCGG-GCAATCGTGCCCT
1 GTTTAAAAAATTCTTTAAAA-GAAGGCAATGTTCGATGTTTGGAAATTCGGAG-AATCGTGCCCT
* *
221064 ATCGTGCTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAATATTCCTTTGGAATTTCACTCA
64 ATCGTGCTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCA
221129 T
129 T
* *
221130 GTTTAAAAAATTCTTTAAAATGAAGGCAACGTTCGATGTTTGGGAATTCGGAGAATCGTGCCCTA
1 GTTTAAAAAATTCTTTAAAA-GAAGGCAATGTTCGATGTTTGGAAATTCGGAGAATCGTGCCCTA
* *
221195 TCGTGCTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGGATATTCCTTTAGAATTTCACTCTT
65 TCGTGCTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCAT
*** * * * * *
221260 GTTTTCTAAATTC--TAAAACAAGGCAATGTTCAATGTCTAGAAATTC-GAGGATCGTGCCCTA-
1 GTTTAAAAAATTCTTTAAAAGAAGGCAATGTTCGATGTTTGGAAATTCGGAGAATCGTGCCCTAT
221321 CTGTGCTGGGTT
66 C-GTGCTGGGTT
221333 TCGGTTTTTT
Statistics
Matches: 182, Mismatches: 18, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
125 1 0.01
126 24 0.13
127 22 0.12
128 5 0.03
129 10 0.05
130 119 0.65
131 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (129 bp):
GTTTAAAAAATTCTTTAAAAGAAGGCAATGTTCGATGTTTGGAAATTCGGAGAATCGTGCCCTAT
CGTGCTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCAT
Done.