Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold2688.1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 208928
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.33
Warning! 3683 characters in sequence are not A, C, G, or T
Found at i:3528 original size:15 final size:15
Alignment explanation
Indices: 3508--3537 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
3498 ACAGTGTTGT
3508 GGAGCAACTGCACAA
1 GGAGCAACTGCACAA
3523 GGAGCAACTGCACAA
1 GGAGCAACTGCACAA
3538 CTCAAGCAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.27, G:0.27, T:0.07
Consensus pattern (15 bp):
GGAGCAACTGCACAA
Found at i:3980 original size:485 final size:485
Alignment explanation
Indices: 3071--4007 Score: 1856
Period size: 485 Copynumber: 1.9 Consensus size: 485
3061 GGATAACAAG
3071 GAGATGAGGTTTTATGAAGATGCGAAAGAAATGAGAAGCATATGCGCGACAGAGTTGGGAACAAA
1 GAGATGAGGTTTTATGAAGATGCGAAAGAAATGAGAAGCATATGCGCGACAGAGTTGGGAACAAA
3136 GGCTCCAAAAATAAATCATCCTGTGGTCATTATCTCACGCCCTAGGGGTAATGAGGTTAGGGCTC
66 GGCTCCAAAAATAAATCATCCTGTGGTCATTATCTCACGCCCTAGGGGTAATGAGGTTAGGGCTC
3201 AGGTAACACCGAAAATTGTAATCCAAAAACCATCAAATTTCTCTTATAGGGATAACAAAATGGTG
131 AGGTAACACCGAAAATTGTAATCCAAAAACCATCAAATTTCTCTTATAGGGATAACAAAATGGTG
3266 CCGTGGAATTACGGGTGTAATGTGACCATTTTGGGAAAAGAAGCAAATCAGGAAATAGGTTCTTA
196 CCGTGGAATTACGGGTGTAATGTGACCATTTTGGGAAAAGAAGCAAATCAGGAAATAGGTTCTTA
3331 CACGCGCAATGGAAAAAGATATGACGCTCAAGCAGAGTCGTCCAGGGAAGAGAATTGGAAGAAAG
261 CACGCGCAATGGAAAAAGATATGACGCTCAAGCAGAGTCGTCCAGGGAAGAGAATTGGAAGAAAG
3396 AACAGAGGAAAGGGAAAGCAGTAGAAGTTGAGCCATTGGTAAATGAACCAATAAAAGAAGAGGAG
326 AACAGAGGAAAGGGAAAGCAGTAGAAGTTGAGCCATTGGTAAATGAACCAATAAAAGAAGAGGAG
3461 GCAAAGGAGTTTTTGAAGTTTTTGAAACACAGTGAATACAGTGTTGTGGAGCAACTGCACAAGGA
391 GCAAAGGAGTTTTTGAAGTTTTTGAAACACAGTGAATACAGTGTTGTGGAGCAACTGCACAAGGA
3526 GCAACTGCACAACTCAAGCAGAGTCGTCCA
456 GCAACTGCACAACTCAAGCAGAGTCGTCCA
3556 GAGATGAGGTTTTATGAAGATGCGAAAGAAATGAGAAGCATATGCGCGACAGAGTTGGGAACAAA
1 GAGATGAGGTTTTATGAAGATGCGAAAGAAATGAGAAGCATATGCGCGACAGAGTTGGGAACAAA
3621 GGCTCCAAAAATAAATCATCCTGTGGTCATTATCTCACGCCCTAGGGGTAATGAGGTTAGGGCTC
66 GGCTCCAAAAATAAATCATCCTGTGGTCATTATCTCACGCCCTAGGGGTAATGAGGTTAGGGCTC
3686 AGGTAACACCGAAAATTGTAATCCAAAAACCATCAAATTTCTCTTATAGGGATAACAAAATGGTG
131 AGGTAACACCGAAAATTGTAATCCAAAAACCATCAAATTTCTCTTATAGGGATAACAAAATGGTG
3751 CCGTGGAATTACGGGTGTAATGTGACCATTTTGGGAAAAGAAGCAAATCAGGAAATAGGTTCTTA
196 CCGTGGAATTACGGGTGTAATGTGACCATTTTGGGAAAAGAAGCAAATCAGGAAATAGGTTCTTA
3816 CACGCGCAATGGAAAAAGATATGACGCTCAAGCAGAGTCGTCCAGGGAAGAGAATTGGAAGAAAG
261 CACGCGCAATGGAAAAAGATATGACGCTCAAGCAGAGTCGTCCAGGGAAGAGAATTGGAAGAAAG
*
3881 AACAGAGGAAAGGGAAAGCAGTAGAAGTTGAGTCATTGGTAAATGAACCAATAAAAGAAGAGGAG
326 AACAGAGGAAAGGGAAAGCAGTAGAAGTTGAGCCATTGGTAAATGAACCAATAAAAGAAGAGGAG
*
3946 GCAAATGAGTTTTTGAAGTTTTTGAAACACAGTGAATACAGTGTTGTGGAGCAACTGCACAA
391 GCAAAGGAGTTTTTGAAGTTTTTGAAACACAGTGAATACAGTGTTGTGGAGCAACTGCACAA
4008 ACAGCCAGCC
Statistics
Matches: 450, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
485 450 1.00
ACGTcount: A:0.38, C:0.15, G:0.27, T:0.21
Consensus pattern (485 bp):
GAGATGAGGTTTTATGAAGATGCGAAAGAAATGAGAAGCATATGCGCGACAGAGTTGGGAACAAA
GGCTCCAAAAATAAATCATCCTGTGGTCATTATCTCACGCCCTAGGGGTAATGAGGTTAGGGCTC
AGGTAACACCGAAAATTGTAATCCAAAAACCATCAAATTTCTCTTATAGGGATAACAAAATGGTG
CCGTGGAATTACGGGTGTAATGTGACCATTTTGGGAAAAGAAGCAAATCAGGAAATAGGTTCTTA
CACGCGCAATGGAAAAAGATATGACGCTCAAGCAGAGTCGTCCAGGGAAGAGAATTGGAAGAAAG
AACAGAGGAAAGGGAAAGCAGTAGAAGTTGAGCCATTGGTAAATGAACCAATAAAAGAAGAGGAG
GCAAAGGAGTTTTTGAAGTTTTTGAAACACAGTGAATACAGTGTTGTGGAGCAACTGCACAAGGA
GCAACTGCACAACTCAAGCAGAGTCGTCCA
Found at i:10329 original size:150 final size:150
Alignment explanation
Indices: 10058--10359 Score: 595
Period size: 150 Copynumber: 2.0 Consensus size: 150
10048 TCTAGTTAGG
10058 AGCATTTGTTTCATTTTGATCATGTCATCCTAATCATTAGGCATAATTAGGTTTATTATACAGGT
1 AGCATTTGTTTCATTTTGATCATGTCATCCTAATCATTAGGCATAATTAGGTTTATTATACAGGT
*
10123 CTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTTAGATCCTATCTCCCTGAGATTAC
66 CTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCCTATCTCCCTGAGATTAC
10188 AGTGGAGCGGATTAAAATAA
131 AGTGGAGCGGATTAAAATAA
10208 AGCATTTGTTTCATTTTGATCATGTCATCCTAATCATTAGGCATAATTAGGTTTATTATACAGGT
1 AGCATTTGTTTCATTTTGATCATGTCATCCTAATCATTAGGCATAATTAGGTTTATTATACAGGT
10273 CTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCCTATCTCCCTGAGATTAC
66 CTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCCTATCTCCCTGAGATTAC
10338 AGTGGAGCGGATTAAAATAA
131 AGTGGAGCGGATTAAAATAA
10358 AG
1 AG
10360 GATCTTATCT
Statistics
Matches: 151, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 151 1.00
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (150 bp):
AGCATTTGTTTCATTTTGATCATGTCATCCTAATCATTAGGCATAATTAGGTTTATTATACAGGT
CTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCCTATCTCCCTGAGATTAC
AGTGGAGCGGATTAAAATAA
Found at i:10470 original size:46 final size:44
Alignment explanation
Indices: 10272--10479 Score: 163
Period size: 46 Copynumber: 4.7 Consensus size: 44
10262 ATTATACAGG
* *
10272 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGGTTACAGTGGAGCAGACC-AAGAA-TTCAGA
* * * ** **
10318 TCCTATCTCCCTGAGATTACAGTGGAGCGGATTAA-AATAAAGGA
1 TCTTATCTCCCTGAGGTTACAGTGGAGCAGACCAAGAATTCA-GA
* * ** * * * *
10362 TCTTATCTCTCTGAAGTTACAGCAGAGTAGATC--GCA-TCAGG
1 TCTTATCTCCCTGAGGTTACAGTGGAGCAGACCAAGAATTCAGA
* * *
10403 TCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGA
1 TCTTATCTCCCTGAGGTTACAGTGGAGCAGACC-AAGAA-TTCAGA
10449 TCTTATCTCCCTGAGGTTACAGTGGAGCAGA
1 TCTTATCTCCCTGAGGTTACAGTGGAGCAGA
10480 TTGAAGCCAG
Statistics
Matches: 124, Mismatches: 31, Indels: 14
0.73 0.18 0.08
Matches are distributed among these distances:
41 28 0.23
42 1 0.01
43 3 0.02
44 30 0.24
45 2 0.02
46 60 0.48
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (44 bp):
TCTTATCTCCCTGAGGTTACAGTGGAGCAGACCAAGAATTCAGA
Found at i:10502 original size:131 final size:131
Alignment explanation
Indices: 10268--10524 Score: 356
Period size: 131 Copynumber: 2.0 Consensus size: 131
10258 GTTTATTATA
* *
10268 CAGGTCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCCTATCTCCCTGAG
1 CAGGTCTTATCACCCTGAGATTACAGGGGAACAGACCAAAGAATTTCAGATCCTATCTCCCTGAG
* *
10333 ATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGA-AGTTACAGCAGAGTAGATCGC
66 ATTACAGTGGAGCAGATTAAAACAAAGGATCTTATCTCTCTGAGA-TTACAGCAGAGTAGATCGC
10397 AT
130 AT
* ** * *
10399 CAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAG
1 CAGGTCTTATCACCCTGAGATTACAGGGGAACAGACCAAAGAATTTCAGATCCTATCTCCCTGAG
* * * * *
10464 GTTACAGTGGAGCAGATTGAAGC-CAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGAT
66 ATTACAGTGGAGCAGATTAAAACAAAG-GATCTTATCTCTCTGAGATTACAGCAGAGTAGAT
10525 TGAAGCTAGT
Statistics
Matches: 110, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
130 2 0.02
131 107 0.97
132 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.26
Consensus pattern (131 bp):
CAGGTCTTATCACCCTGAGATTACAGGGGAACAGACCAAAGAATTTCAGATCCTATCTCCCTGAG
ATTACAGTGGAGCAGATTAAAACAAAGGATCTTATCTCTCTGAGATTACAGCAGAGTAGATCGCA
T
Found at i:10507 original size:44 final size:44
Alignment explanation
Indices: 10446--10612 Score: 178
Period size: 44 Copynumber: 3.8 Consensus size: 44
10436 GAAGAATTTC
* * *
10446 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG
1 AGATCTTATCTCTCTGAAGTTACAGTGGAGCAGATTGAAGCTAG
* *
10490 AGATCTTATCTCTCTG-AGATTACAGCGGAGTAGATTGAAGCTAG
1 AGATCTTATCTCTCTGAAG-TTACAGTGGAGCAGATTGAAGCTAG
* * ** *
10534 TA-ATCCTATCTCTCTGAAGTTACAGTGGAGCGGATT-AAAATAA
1 -AGATCTTATCTCTCTGAAGTTACAGTGGAGCAGATTGAAGCTAG
* *
10577 AGGATCTTATCTCTCTGAAGTTACAGTAGAGGAGAT
1 A-GATCTTATCTCTCTGAAGTTACAGTGGAGCAGAT
10613 CGTGTTAGGT
Statistics
Matches: 102, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
42 1 0.01
43 5 0.05
44 93 0.91
45 3 0.03
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.29
Consensus pattern (44 bp):
AGATCTTATCTCTCTGAAGTTACAGTGGAGCAGATTGAAGCTAG
Found at i:17633 original size:20 final size:20
Alignment explanation
Indices: 17610--17651 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
17600 TTAATTTTTT
*
17610 TTTAAATCTTAAAATATTAA
1 TTTAAATCTTAAAATAATAA
* *
17630 TTTATATTTTAAAATAATAA
1 TTTAAATCTTAAAATAATAA
17650 TT
1 TT
17652 GTAAGGACTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (20 bp):
TTTAAATCTTAAAATAATAA
Found at i:22246 original size:7 final size:7
Alignment explanation
Indices: 22234--22260 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
22224 ATTTAAGTAT
22234 TTTATTA
1 TTTATTA
22241 TTTATTA
1 TTTATTA
22248 TTTATTA
1 TTTATTA
22255 TTTATT
1 TTTATT
22261 TGTTAAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (7 bp):
TTTATTA
Found at i:31181 original size:11 final size:11
Alignment explanation
Indices: 31160--31190 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
31150 ATGTTATTTT
31160 ATATATTTAATA
1 ATAT-TTTAATA
31172 ATATTTTAATA
1 ATATTTTAATA
31183 ATATTTTA
1 ATATTTTA
31191 TGTTATTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 15 0.79
12 4 0.21
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (11 bp):
ATATTTTAATA
Found at i:31326 original size:20 final size:20
Alignment explanation
Indices: 31280--31326 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
31270 AATCAAAAGA
31280 TCAAGTTCAGAATTTGAATT
1 TCAAGTTCAGAATTTGAATT
*
31300 TCGAGTTCTA-AATTTTGAA-T
1 TCAAGTTC-AGAA-TTTGAATT
31320 TCAAGTT
1 TCAAGTT
31327 AAAATAATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 16 0.70
21 7 0.30
ACGTcount: A:0.32, C:0.11, G:0.15, T:0.43
Consensus pattern (20 bp):
TCAAGTTCAGAATTTGAATT
Found at i:31833 original size:14 final size:15
Alignment explanation
Indices: 31808--31836 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
31798 TTAAAAAAAA
31808 TATAGCTTTATTTAT
1 TATAGCTTTATTTAT
31823 TATAG-TTTATTTAT
1 TATAGCTTTATTTAT
31837 AAAAAAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.28, C:0.03, G:0.07, T:0.62
Consensus pattern (15 bp):
TATAGCTTTATTTAT
Found at i:32281 original size:69 final size:69
Alignment explanation
Indices: 32171--32316 Score: 292
Period size: 69 Copynumber: 2.1 Consensus size: 69
32161 TTTTTGTAAA
32171 AAAAAAAAGATTTATTTTTTTAAATAATTAAAAATAAACTGATTTGCTAAATAATATTTGTATAC
1 AAAAAAAAGATTTATTTTTTTAAATAATTAAAAATAAACTGATTTGCTAAATAATATTTGTATAC
32236 ATTT
66 ATTT
32240 AAAAAAAAGATTTATTTTTTTAAATAATTAAAAATAAACTGATTTGCTAAATAATATTTGTATAC
1 AAAAAAAAGATTTATTTTTTTAAATAATTAAAAATAAACTGATTTGCTAAATAATATTTGTATAC
32305 ATTT
66 ATTT
32309 AAAAAAAA
1 AAAAAAAA
32317 AAAATCGCAG
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 77 1.00
ACGTcount: A:0.51, C:0.04, G:0.05, T:0.40
Consensus pattern (69 bp):
AAAAAAAAGATTTATTTTTTTAAATAATTAAAAATAAACTGATTTGCTAAATAATATTTGTATAC
ATTT
Found at i:36178 original size:25 final size:24
Alignment explanation
Indices: 36130--36178 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
36120 ATTTGTTTTA
*
36130 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATGATTTTAAAT
36154 ATATTTGATTTATTAT-ATTTTAAAT
1 ATATTTG-TTT-TTATGATTTTAAAT
36179 TTTTTTATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 7 0.32
25 11 0.50
26 4 0.18
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (24 bp):
ATATTTGTTTTTATGATTTTAAAT
Found at i:43546 original size:3 final size:3
Alignment explanation
Indices: 43538--43562 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
43528 AGAGACAGAG
43538 AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA A
43563 CCTCCAATGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:50369 original size:30 final size:29
Alignment explanation
Indices: 50298--50369 Score: 81
Period size: 30 Copynumber: 2.4 Consensus size: 29
50288 TTTTTTATTG
* *
50298 AAACATTTTTATATTAATTAATTATGAAA
1 AAACATTTTTATATTAAATAATAATGAAA
* *
50327 AATACATGTTTATATTAAATATATAATGAGA
1 AA-ACATTTTTATATTAAATA-ATAATGAAA
*
50358 AAACCTTTTTAT
1 AAACATTTTTAT
50370 GGTGAATTAT
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
29 2 0.06
30 24 0.69
31 9 0.26
ACGTcount: A:0.46, C:0.06, G:0.06, T:0.43
Consensus pattern (29 bp):
AAACATTTTTATATTAAATAATAATGAAA
Found at i:52857 original size:12 final size:12
Alignment explanation
Indices: 52840--52865 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
52830 ATTTTAAAAG
52840 AATAAGAATATA
1 AATAAGAATATA
52852 AATAAGAATATA
1 AATAAGAATATA
52864 AA
1 AA
52866 AATTATTATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.23
Consensus pattern (12 bp):
AATAAGAATATA
Found at i:66823 original size:20 final size:18
Alignment explanation
Indices: 66775--66811 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
66765 ACACAGTTTA
*
66775 TACTTTAAAAAATATAAT
1 TACTATAAAAAATATAAT
66793 TACTATAAAAAA-ATAAT
1 TACTATAAAAAATATAAT
66810 TA
1 TA
66812 GCATGATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.35
Consensus pattern (18 bp):
TACTATAAAAAATATAAT
Found at i:68297 original size:4 final size:4
Alignment explanation
Indices: 68288--68312 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
68278 GGTAGCTGCG
68288 ATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA A
68313 AGGGCAAAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:70460 original size:324 final size:324
Alignment explanation
Indices: 69871--70517 Score: 1285
Period size: 324 Copynumber: 2.0 Consensus size: 324
69861 CCCAGCAACA
69871 TACATTCCAGAAGAGTAACAAGCTAGAAAAGCAACATCGATTTCGCCCAATTTCGATGTACCATC
1 TACATTCCAGAAGAGTAACAAGCTAGAAAAGCAACATCGATTTCGCCCAATTTCGATGTACCATC
69936 GGATTGGTTAAAAGGATACCAACCCTGGCTTTCAACCCTGTTTCTATCAAAACTGACAAATTCTT
66 GGATTGGTTAAAAGGATACCAACCCTGGCTTTCAACCCTGTTTCTATCAAAACTGACAAATTCTT
70001 CTTCCTTGATAAAGACATTCCCAACAGGCCAAGGGCTAACCTTTGAGTTTTTCAGTGATTCAGGA
131 CTTCCTTGATAAAGACATTCCCAACAGGCCAAGGGCTAACCTTTGAGTTTTTCAGTGATTCAGGA
70066 TAGAAAACGCTTTTAACTATGCTGCTAGGTTTCCTAGAGGCGTGATAGCTCGCATATGCTATGAA
196 TAGAAAACGCTTTTAACTATGCTGCTAGGTTTCCTAGAGGCGTGATAGCTCGCATATGCTATGAA
*
70131 GGTAAGCAATAATATTATGTATCTATATGATTTTAGGGTCCAATCTTTACCCCTAACACTTTTG
261 GGTAAGCAATAATATTATGTATCTATATGATTTTAGGGCCCAATCTTTACCCCTAACACTTTTG
70195 TACATTCCAGAAGAGTAACAAGCTAGAAAAGCAACATCGATTTCGCCCAATTTCGATGTACCATC
1 TACATTCCAGAAGAGTAACAAGCTAGAAAAGCAACATCGATTTCGCCCAATTTCGATGTACCATC
70260 GGATTGGTTAAAAGGATACCAACCCTGGCTTTCAACCCTGTTTCTATCAAAACTGACAAATTCTT
66 GGATTGGTTAAAAGGATACCAACCCTGGCTTTCAACCCTGTTTCTATCAAAACTGACAAATTCTT
70325 CTTCCTTGATAAAGACATTCCCAACAGGCCAAGGGCTAACCTTTGAGTTTTTCAGTGATTCAGGA
131 CTTCCTTGATAAAGACATTCCCAACAGGCCAAGGGCTAACCTTTGAGTTTTTCAGTGATTCAGGA
70390 TAGAAAACGCTTTTAACTATGCTGCTAGGTTTCCTAGAGGCGTGATAGCTCGCATATGCTATGAA
196 TAGAAAACGCTTTTAACTATGCTGCTAGGTTTCCTAGAGGCGTGATAGCTCGCATATGCTATGAA
70455 GGTAAGCAATAATATTATGTATCTATATGATTTTAGGGCCCAATCTTTACCCCTAACACTTTT
261 GGTAAGCAATAATATTATGTATCTATATGATTTTAGGGCCCAATCTTTACCCCTAACACTTTT
70518 TATCAGAAAA
Statistics
Matches: 322, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
324 322 1.00
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.30
Consensus pattern (324 bp):
TACATTCCAGAAGAGTAACAAGCTAGAAAAGCAACATCGATTTCGCCCAATTTCGATGTACCATC
GGATTGGTTAAAAGGATACCAACCCTGGCTTTCAACCCTGTTTCTATCAAAACTGACAAATTCTT
CTTCCTTGATAAAGACATTCCCAACAGGCCAAGGGCTAACCTTTGAGTTTTTCAGTGATTCAGGA
TAGAAAACGCTTTTAACTATGCTGCTAGGTTTCCTAGAGGCGTGATAGCTCGCATATGCTATGAA
GGTAAGCAATAATATTATGTATCTATATGATTTTAGGGCCCAATCTTTACCCCTAACACTTTTG
Found at i:77047 original size:23 final size:22
Alignment explanation
Indices: 77005--77048 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
76995 TTAAGTTATA
77005 TTATTTAAAAAATATTAATATTT
1 TTATTTAAAAAATA-TAATATTT
77028 TTATTTAATAATAATA-AATAT
1 TTATTTAA-AA-AATATAATAT
77049 ACATAAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 13 0.68
24 2 0.11
25 4 0.21
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
TTATTTAAAAAATATAATATTT
Found at i:77263 original size:16 final size:14
Alignment explanation
Indices: 77230--77259 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
77220 ATTTAGTTTC
77230 TTAATCTAATATAT
1 TTAATCTAATATAT
*
77244 TTAATTTAATATAT
1 TTAATCTAATATAT
77258 TT
1 TT
77260 TTAAAATTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (14 bp):
TTAATCTAATATAT
Found at i:84026 original size:20 final size:20
Alignment explanation
Indices: 84003--84058 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 20
83993 CCAATAGAGA
84003 TATTGTTATATAAATAGATT
1 TATTGTTATATAAATAGATT
* * *
84023 TATTGGTATGTATTATAGATT
1 TATTGTTATATA-AATAGATT
*
84044 TGTTGTTCATATAAA
1 TATTGTT-ATATAAA
84059 ATGTTGTTAT
Statistics
Matches: 27, Mismatches: 7, Indels: 3
0.73 0.19 0.08
Matches are distributed among these distances:
20 10 0.37
21 13 0.48
22 4 0.15
ACGTcount: A:0.34, C:0.02, G:0.14, T:0.50
Consensus pattern (20 bp):
TATTGTTATATAAATAGATT
Found at i:84072 original size:15 final size:16
Alignment explanation
Indices: 84044--84073 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
84034 ATTATAGATT
84044 TGTTGTTCATATAAAA
1 TGTTGTTCATATAAAA
84060 TGTTGTT-ATATAAA
1 TGTTGTTCATATAAA
84074 TAGATATGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.37, C:0.03, G:0.13, T:0.47
Consensus pattern (16 bp):
TGTTGTTCATATAAAA
Found at i:84633 original size:33 final size:31
Alignment explanation
Indices: 84562--84620 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
84552 AATTTGTTAA
* *
84562 TTAATGCATTGTCTATGTGTTCTTTCTATTT
1 TTAATGCATAGTCTATATGTTCTTTCTATTT
84593 TTAATGCATAGTCTATATGTTCTTTCTA
1 TTAATGCATAGTCTATATGTTCTTTCTA
84621 CTTTGATTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.20, C:0.14, G:0.12, T:0.54
Consensus pattern (31 bp):
TTAATGCATAGTCTATATGTTCTTTCTATTT
Found at i:85400 original size:13 final size:13
Alignment explanation
Indices: 85384--85409 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
85374 TCAATTAACG
85384 AAAAATATTAATA
1 AAAAATATTAATA
85397 AAAAATATTAATA
1 AAAAATATTAATA
85410 GTTGTAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
AAAAATATTAATA
Found at i:88545 original size:16 final size:16
Alignment explanation
Indices: 88519--88558 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
88509 ATTAAAACTT
* *
88519 AATATTCTAAAATATA
1 AATATTTTAAAATAAA
*
88535 ATTATTTTAAAATAAA
1 AATATTTTAAAATAAA
88551 AATATTTT
1 AATATTTT
88559 TTTACATTCA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (16 bp):
AATATTTTAAAATAAA
Found at i:91799 original size:13 final size:14
Alignment explanation
Indices: 91775--91808 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
91765 TCGAATTATC
*
91775 TATTAATTTTAAAA
1 TATTAATGTTAAAA
91789 T-TTAATGTTAAAA
1 TATTAATGTTAAAA
91802 TATTAAT
1 TATTAAT
91809 TTCATTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (14 bp):
TATTAATGTTAAAA
Found at i:92011 original size:20 final size:20
Alignment explanation
Indices: 91988--92025 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
91978 ATTAGGATAA
91988 AATTATCATAAT-ATTTATAT
1 AATTAT-ATAATAATTTATAT
92008 AATTATATAATAATTTAT
1 AATTATATAATAATTTAT
92026 TTCATATGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (20 bp):
AATTATATAATAATTTATAT
Found at i:95704 original size:21 final size:21
Alignment explanation
Indices: 95680--95720 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
95670 GTTAAAAAAT
95680 TTATTTTAAAATTTATCATAA
1 TTATTTTAAAATTTATCATAA
95701 TTATTTTAAAATTTATCATA
1 TTATTTTAAAATTTATCATA
95721 CTTTTTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (21 bp):
TTATTTTAAAATTTATCATAA
Found at i:101360 original size:181 final size:180
Alignment explanation
Indices: 101041--101575 Score: 1011
Period size: 181 Copynumber: 3.0 Consensus size: 180
101031 TCAGTATAAT
* *
101041 GTTTTACAAATTGTAACATAACCTGCTAGTATGAAACTAGTTTCGGTGTAGACA--GTGGTTTTT
1 GTTTTACAAATTGTAACATAATCTGCTAGTATGAAACTAGTATCGGTGTAGACAGTGTGGTTTTT
101104 CAACTCTGATATTATAAAATTTTACCATTAACACTTGGAAAGATCAAGATAAAATTTGTGGGAGT
66 CAACTCTGATATTATAAAATTTTACCATTAACACTTGGAAAGATCAAGATAAAATTTGTGGGAGT
101169 AAAGATGGCATGTATCCTACAACCACACTACATGTGGAATTAAGCTTGAA
131 AAAGATGGCATGTATCCTACAACCACACTACATGTGGAATTAAGCTTGAA
*
101219 GTTTTACAAATTGTAACATAATCTGCTAGTATGAAGCTAGTATCGGTGTAGACAGTGTGGTTTTT
1 GTTTTACAAATTGTAACATAATCTGCTAGTATGAAACTAGTATCGGTGTAGACAGTGTGGTTTTT
101284 CAACTCTGATATTATAAAATTTTACCATTTAACACTTGGAAAGATCAAGATAAAATTTGTGGGAG
66 CAACTCTGATATTATAAAATTTTACCA-TTAACACTTGGAAAGATCAAGATAAAATTTGTGGGAG
101349 TAAAGATGGCATGTATCCTACAACCACACTACATGTGGAATTAAGCTTGAA
130 TAAAGATGGCATGTATCCTACAACCACACTACATGTGGAATTAAGCTTGAA
101400 GTTTTACAAATTGTAACATAATCTGCTAGTATGAAACTAGTATCGGTGTAGACAGTGTGGTTTTT
1 GTTTTACAAATTGTAACATAATCTGCTAGTATGAAACTAGTATCGGTGTAGACAGTGTGGTTTTT
*
101465 CAACTCTGATATTATAAAATTTTACCATTAACACTCGGAAAGATCAAGATAAAATTTGTGGGAGT
66 CAACTCTGATATTATAAAATTTTACCATTAACACTTGGAAAGATCAAGATAAAATTTGTGGGAGT
101530 AAAGATGGCATGTATCCTACAACCACACTACATGTGGAATTAAGCT
131 AAAGATGGCATGTATCCTACAACCACACTACATGTGGAATTAAGCT
101576 CGAAATCTCC
Statistics
Matches: 349, Mismatches: 5, Indels: 4
0.97 0.01 0.01
Matches are distributed among these distances:
178 51 0.15
180 119 0.34
181 179 0.51
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.32
Consensus pattern (180 bp):
GTTTTACAAATTGTAACATAATCTGCTAGTATGAAACTAGTATCGGTGTAGACAGTGTGGTTTTT
CAACTCTGATATTATAAAATTTTACCATTAACACTTGGAAAGATCAAGATAAAATTTGTGGGAGT
AAAGATGGCATGTATCCTACAACCACACTACATGTGGAATTAAGCTTGAA
Found at i:108513 original size:52 final size:49
Alignment explanation
Indices: 108448--108605 Score: 154
Period size: 52 Copynumber: 3.0 Consensus size: 49
108438 TATAAAATTT
*
108448 AAATTAATTATTATACTTTTTTGAAATTATTTATTTATTTTATATATTTTA
1 AAATTTATTATTATA-TTTTTTGAAA-TATTTATTTATTTTATATATTTTA
* * *
108499 AAATTTATATATTATTATTTCTTGTCACTAATATTTTTTTATTTTTATATATTTCTT
1 AAATTTAT-TATTA-TATTT-TT-TGA--AATATTTATTTA-TTTTATATATTT-TA
* *
108556 AAATTTATTATTATATTTTTTGAAAATATTTATATAATTATATATATTTT
1 AAATTTATTATTATATTTTTTG-AAATATTTAT-TTATTTTATATATTTT
108606 TATTTCTTTT
Statistics
Matches: 89, Mismatches: 8, Indels: 20
0.76 0.07 0.17
Matches are distributed among these distances:
51 8 0.09
52 27 0.30
53 7 0.08
54 5 0.06
55 14 0.16
56 19 0.21
57 9 0.10
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.61
Consensus pattern (49 bp):
AAATTTATTATTATATTTTTTGAAATATTTATTTATTTTATATATTTTA
Found at i:110300 original size:36 final size:36
Alignment explanation
Indices: 110253--110326 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
110243 CATAAGCTGT
110253 CTTTGGTTAAATGGTCAGATTGTTGTCAACCTCTCA
1 CTTTGGTTAAATGGTCAGATTGTTGTCAACCTCTCA
110289 CTTTGGTTAAATGGTCAGATTGTTGTCAACCTCTCA
1 CTTTGGTTAAATGGTCAGATTGTTGTCAACCTCTCA
110325 CT
1 CT
110327 AATGGTGGAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (36 bp):
CTTTGGTTAAATGGTCAGATTGTTGTCAACCTCTCA
Found at i:110678 original size:16 final size:16
Alignment explanation
Indices: 110657--110724 Score: 127
Period size: 16 Copynumber: 4.2 Consensus size: 16
110647 TTTGGTTCGC
110657 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
110673 TGTATTGGATTAGAGA
1 TGTATTGGATTAGAGG
110689 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
110705 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
110721 TGTA
1 TGTA
110725 ATAGCAAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.26, C:0.00, G:0.35, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:110981 original size:18 final size:17
Alignment explanation
Indices: 110960--110994 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
110950 TTATTATTAA
*
110960 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
110978 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
110995 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:111101 original size:18 final size:17
Alignment explanation
Indices: 111080--111114 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
111070 TTATTATTAA
*
111080 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
111098 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
111115 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:111156 original size:120 final size:120
Alignment explanation
Indices: 110943--111445 Score: 997
Period size: 120 Copynumber: 4.2 Consensus size: 120
110933 ATCATATTTA
110943 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
111008 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
111063 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
111128 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
111183 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
111248 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
111303 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
111368 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
*
111423 AACATAATAATTATTAAATATAT
1 AACATAATTATTATTAAATATAT
111446 AACTTGAAAA
Statistics
Matches: 382, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
120 382 1.00
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:111221 original size:18 final size:17
Alignment explanation
Indices: 111200--111234 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
111190 TTATTATTAA
*
111200 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
111218 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
111235 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:111341 original size:18 final size:17
Alignment explanation
Indices: 111320--111354 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
111310 TTATTATTAA
*
111320 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
111338 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
111355 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:115078 original size:13 final size:13
Alignment explanation
Indices: 115060--115086 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
115050 TGTAAGAGAC
115060 ATCAGACTTCTAG
1 ATCAGACTTCTAG
115073 ATCAGACTTCTAG
1 ATCAGACTTCTAG
115086 A
1 A
115087 AAAGCCAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (13 bp):
ATCAGACTTCTAG
Found at i:133338 original size:17 final size:17
Alignment explanation
Indices: 133316--133349 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
133306 TAAAAGAACT
133316 TGTTAAGATTTAAATAA
1 TGTTAAGATTTAAATAA
*
133333 TGTTAATATTTAAATAA
1 TGTTAAGATTTAAATAA
133350 AATATATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (17 bp):
TGTTAAGATTTAAATAA
Found at i:139992 original size:268 final size:268
Alignment explanation
Indices: 139515--140049 Score: 1034
Period size: 268 Copynumber: 2.0 Consensus size: 268
139505 TTTATTGGTG
*
139515 TCTGGACTCTGGACAGGGCCCCTTTCACTCACTTGAAATTCATATTTGACAATTCAGGCATGTAG
1 TCTGGACTCTAGACAGGGCCCCTTTCACTCACTTGAAATTCATATTTGACAATTCAGGCATGTAG
139580 ACTGTTGGAATATGTGTGTTTCTGCACACATCTCATGCATGAATGTTAAGCTTTATTTACTAAAT
66 ACTGTTGGAATATGTGTGTTTCTGCACACATCTCATGCATGAATGTTAAGCTTTATTTACTAAAT
139645 AAATTTAAGACGGTGCATTACCAAAGAGGGAAACTTCATGTAAATATTAATTGCAAATGTTTCCA
131 AAATTTAAGACGGTGCATTACCAAAGAGGGAAACTTCATGTAAATATTAATTGCAAATGTTTCCA
139710 AATACTGGCGAACAGAAGGTAAGTTGTTTCTCTGCAAAAGAGACATGACCAGATATTAGTGGAGA
196 AATACTGGCGAACAGAAGGTAAGTTGTTTCTCTGCAAAAGAGACATGACCAGATATTAGTGGAGA
139775 TATGTTAT
261 TATGTTAT
*
139783 TCTGGACTCTAGACAGGGCTCCTTTCACTCACTTGAAATTCATATTTGACAATTCAGGCATGTAG
1 TCTGGACTCTAGACAGGGCCCCTTTCACTCACTTGAAATTCATATTTGACAATTCAGGCATGTAG
*
139848 ACTGTTGGAATATGTGTGTTTCTGCACACATCTCCTGCATGAATGTTAAGCTTTATTTACTAAAT
66 ACTGTTGGAATATGTGTGTTTCTGCACACATCTCATGCATGAATGTTAAGCTTTATTTACTAAAT
*
139913 AAATTTAAGATGGTGCATTACCAAAGAGGGAAACTTCATGTAAATATTAATTGCAAATGTTTCCA
131 AAATTTAAGACGGTGCATTACCAAAGAGGGAAACTTCATGTAAATATTAATTGCAAATGTTTCCA
139978 AATACTGGCGAACAGAAGGTAAGTTGTTTCTCTGCAAAAGAGACATGACCAGATATTAGTGGAGA
196 AATACTGGCGAACAGAAGGTAAGTTGTTTCTCTGCAAAAGAGACATGACCAGATATTAGTGGAGA
140043 TATGTTA
261 TATGTTA
140050 CACAATCCAA
Statistics
Matches: 263, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
268 263 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (268 bp):
TCTGGACTCTAGACAGGGCCCCTTTCACTCACTTGAAATTCATATTTGACAATTCAGGCATGTAG
ACTGTTGGAATATGTGTGTTTCTGCACACATCTCATGCATGAATGTTAAGCTTTATTTACTAAAT
AAATTTAAGACGGTGCATTACCAAAGAGGGAAACTTCATGTAAATATTAATTGCAAATGTTTCCA
AATACTGGCGAACAGAAGGTAAGTTGTTTCTCTGCAAAAGAGACATGACCAGATATTAGTGGAGA
TATGTTAT
Found at i:142335 original size:61 final size:61
Alignment explanation
Indices: 142240--142359 Score: 204
Period size: 61 Copynumber: 2.0 Consensus size: 61
142230 CACATACAAA
* *
142240 AACAACACACATGCACAATAAGCACACCCTTACACTAACACCAACACCCATAAATTCATCC
1 AACAACACACATGCACAATAAACACACCCTTACACAAACACCAACACCCATAAATTCATCC
* *
142301 AACAACACATATGCACAATAAATACACCCTTACACAAACACCAACACCCATAAATTCAT
1 AACAACACACATGCACAATAAACACACCCTTACACAAACACCAACACCCATAAATTCAT
142360 GCATATACAG
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 55 1.00
ACGTcount: A:0.47, C:0.35, G:0.03, T:0.16
Consensus pattern (61 bp):
AACAACACACATGCACAATAAACACACCCTTACACAAACACCAACACCCATAAATTCATCC
Found at i:149594 original size:23 final size:22
Alignment explanation
Indices: 149542--149594 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
149532 TCCACGTCTT
*
149542 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
149564 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
149587 TTTCTTTT
1 TTTCTTTT
149595 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:157095 original size:10 final size:11
Alignment explanation
Indices: 157080--157106 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
157070 ATTATTGTTC
157080 TTTTTTTTCTT
1 TTTTTTTTCTT
157091 TTTTTTTTCTT
1 TTTTTTTTCTT
157102 TTTTT
1 TTTTT
157107 GAAAGTGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (11 bp):
TTTTTTTTCTT
Found at i:163757 original size:26 final size:26
Alignment explanation
Indices: 163723--163788 Score: 91
Period size: 26 Copynumber: 2.6 Consensus size: 26
163713 GTTATATGGT
163723 TTTTCGTGAGCTTCCAGATTAAAGGC
1 TTTTCGTGAGCTTCCAGATTAAAGGC
* *
163749 TCTTT-GTGAGCTTCCTGATTAATGGC
1 T-TTTCGTGAGCTTCCAGATTAAAGGC
163775 TTTTCG-GAGCTTCC
1 TTTTCGTGAGCTTCC
163789 CGATATGGCT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
25 11 0.31
26 22 0.61
27 3 0.08
ACGTcount: A:0.17, C:0.21, G:0.23, T:0.39
Consensus pattern (26 bp):
TTTTCGTGAGCTTCCAGATTAAAGGC
Found at i:171366 original size:46 final size:46
Alignment explanation
Indices: 171262--171482 Score: 189
Period size: 46 Copynumber: 4.8 Consensus size: 46
171252 TATTTGGGTT
* * * * *
171262 TCCGAACTCATTGAGTTGAGTCTGATTTCACTTATGGATGCGAACA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACA
* * **
171308 TCCGAACACGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACA
* * * * * *
171354 TTCGAGCTCGTTGAGTTGGGTCCGAGTTC-GTGA--GATGTAACTAGGTA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CA
* **
171401 TCCGAGCTTGTTGAG-TGAGTCCGAGTTCACTTATGGATGTGAACA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACA
* * *
171446 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
171483 GCGGGTTACA
Statistics
Matches: 141, Mismatches: 26, Indels: 16
0.77 0.14 0.09
Matches are distributed among these distances:
43 6 0.04
45 17 0.12
46 95 0.67
47 17 0.12
49 6 0.04
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.31
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACA
Found at i:173869 original size:23 final size:23
Alignment explanation
Indices: 173842--173886 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
173832 ATTGGAGCTA
173842 TGTACTATCCCAGTTAAAGAATG
1 TGTACTATCCCAGTTAAAGAATG
173865 TGTACTATCCCAGTTAAAGAAT
1 TGTACTATCCCAGTTAAAGAAT
173887 AAATTTACTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.31
Consensus pattern (23 bp):
TGTACTATCCCAGTTAAAGAATG
Found at i:174526 original size:30 final size:29
Alignment explanation
Indices: 174490--174546 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 29
174480 ATAGTATCGT
* *
174490 ATCTTGGGTTTCTTTATTCTGGGTTTCTCA
1 ATCTTGGATTTCTTTATTC-GGCTTTCTCA
174520 ATCTTGGATTTCTTTATTCGGCTTTCT
1 ATCTTGGATTTCTTTATTCGGCTTTCT
174547 TGTTATCTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 7 0.28
30 18 0.72
ACGTcount: A:0.11, C:0.18, G:0.18, T:0.54
Consensus pattern (29 bp):
ATCTTGGATTTCTTTATTCGGCTTTCTCA
Found at i:177507 original size:43 final size:43
Alignment explanation
Indices: 177431--177649 Score: 370
Period size: 43 Copynumber: 5.1 Consensus size: 43
177421 TTAAAGACCC
* * *
177431 GCAGGCTTCGTGCTGGT-AT-TATATTCGGGCCTTCGTACCTA
1 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
177472 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
177515 GCAGGCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
177558 GCAGGCTTCGTGCCGGTGATGTGTATTCGGCCCTTCGTGCCTA
1 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
177601 GCAGGCTTCGTGCCAGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
177644 GCAGGC
1 GCAGGC
177650 GTAATGCTGG
Statistics
Matches: 168, Mismatches: 8, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
41 16 0.10
42 2 0.01
43 150 0.89
ACGTcount: A:0.11, C:0.26, G:0.33, T:0.31
Consensus pattern (43 bp):
GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:182564 original size:46 final size:48
Alignment explanation
Indices: 182492--182594 Score: 156
Period size: 46 Copynumber: 2.2 Consensus size: 48
182482 GACAGGACAT
* * *
182492 GACAGAAATGAGCCATGTAAGTCCATATCA-A-ATATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCAGATATATATGGCATTGGA
*
182538 GACAGGAATGAGCCATGTAAGCCCATATTAGATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCAGATATATATGGCATTGGA
182586 GACAGGAAT
1 GACAGGAAT
182595 AATTCATGTA
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
46 27 0.53
47 1 0.02
48 23 0.45
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (48 bp):
GACAGGAATGAGCCATGTAAGCCCATATCAGATATATATGGCATTGGA
Found at i:182603 original size:48 final size:46
Alignment explanation
Indices: 182492--182611 Score: 150
Period size: 48 Copynumber: 2.6 Consensus size: 46
182482 GACAGGACAT
* * *
182492 GACAGAAATGAGCCATGTAAGTCCATATCAAATATATGGCTTTGGA
1 GACAGGAATAAGCCATGTAAGTCCATATCAAATATATGGCATTGGA
* * *
182538 GACAGGAATGAGCCATGTAAGCCCATATTAGATATATATGGCATTGGA
1 GACAGGAATAAGCCATGTAAGTCCATATCA-A-ATATATGGCATTGGA
**
182586 GACAGGAATAATTCATGTAAGTCCAT
1 GACAGGAATAAGCCATGTAAGTCCAT
182612 GTCGAAGTCA
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
46 27 0.42
47 1 0.02
48 36 0.56
ACGTcount: A:0.37, C:0.15, G:0.23, T:0.26
Consensus pattern (46 bp):
GACAGGAATAAGCCATGTAAGTCCATATCAAATATATGGCATTGGA
Found at i:184072 original size:46 final size:46
Alignment explanation
Indices: 184019--184242 Score: 224
Period size: 46 Copynumber: 4.8 Consensus size: 46
184009 GATATTTGGG
* *
184019 CATCCGAACTCGTTGAGTTGAGTCCGATTTCACTTATGGATGCGAA
1 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* * *
184065 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAA
1 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
** * * *
184111 TGTCCGAGCTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAA
1 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* * *
184153 CTAGGTATCTGAGCTCGTTGAGTTGAGTCAGTGTTCACTTATGGATGCGAA
1 C-----ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* *
184204 C-GCTCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CATC-CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
184243 GCGGGTTACA
Statistics
Matches: 145, Mismatches: 23, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
42 2 0.01
43 4 0.03
45 3 0.02
46 101 0.70
47 26 0.18
48 2 0.01
50 4 0.03
51 3 0.02
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (46 bp):
CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
Found at i:192723 original size:47 final size:47
Alignment explanation
Indices: 192654--192744 Score: 130
Period size: 47 Copynumber: 1.9 Consensus size: 47
192644 ATGAAATCAG
* *
192654 CAGGAGAATTGATAAATGAAGGGCAAAATTGAAATATTGCAAAATTA
1 CAGGAAAATTGATAAATGAAGGGCAAAATTGAAATACTGCAAAATTA
* *
192701 CAGGAAAATTGA-AGAATTAAGGGCAAAATTGGAATACTGCAAAA
1 CAGGAAAATTGATA-AATGAAGGGCAAAATTGAAATACTGCAAAA
192745 ACACCATAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
46 1 0.03
47 38 0.97
ACGTcount: A:0.49, C:0.08, G:0.22, T:0.21
Consensus pattern (47 bp):
CAGGAAAATTGATAAATGAAGGGCAAAATTGAAATACTGCAAAATTA
Found at i:194172 original size:51 final size:51
Alignment explanation
Indices: 194094--195019 Score: 1519
Period size: 51 Copynumber: 18.2 Consensus size: 51
194084 ACTTCTGATC
* * *
194094 AGTGACAAGTTATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGGCA
1 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
* *
194145 AGTGATAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
* *
194196 AGTGATAAATGATAAGTGGTAGCTTTAGCTACACTTATTTGATCAATGACA
1 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
* *
194247 AGTGATAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
* *
194298 AGTGATAAATGATAAGTGGTAGCTTTAGCTACACTTATTTGATCAATGACA
1 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
* *
194349 AGTGATAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
* *
194400 AGTGATAAATGATAAGTGGTAGCTTTAGCTACACTTATTTGATCAATGACA
1 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
* *
194451 AGTGATAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
* *
194502 AGTGATAAATGATAAGTGGTAGCTTTAGCTACACTTATTTGATCAATGACA
1 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
* *
194553 AGTGATAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
* *
194604 AGTGATAAATGATAAGTGGTAGCTTTAGCTACACTTATTTGATCAATGACA
1 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
* *
194655 AGTGATAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
* *
194706 AGTGATAAATGATAAGTGGTAGCTTTAGCTACACTTATTTGATCAATGACA
1 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
* *
194757 AGTGATAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
* *
194808 AGTGATAAATGATAAGTGGTAGCTTTAGCTACACTTATTTGATCAATGACA
1 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
* *
194859 AGTGATAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
* *
194910 AGTGATAAATGATAAGTGGTAGCTTTAGCTACACTTATTTGATCAATGACA
1 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
* *
194961 AGTGATAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
195012 AGTGATAA
1 AGTGATAA
195020 ATGTGATCAG
Statistics
Matches: 806, Mismatches: 69, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 806 1.00
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (51 bp):
AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
Found at i:194256 original size:102 final size:102
Alignment explanation
Indices: 194105--195022 Score: 1818
Period size: 102 Copynumber: 9.0 Consensus size: 102
194095 GTGACAAGTT
* *
194105 ATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGGCAAGTGATAAGTGATAAGTGGTAGTTT
1 ATAAGTGGTAGCTTTAGCTACACTTATTTGATCAATGACAAGTGATAAGTGATAAGTGGTAGTTT
194170 TAGCTACACTTATCTGATCAGTGACAAGTGATAAATG
66 TAGCTACACTTATCTGATCAGTGACAAGTGATAAATG
194207 ATAAGTGGTAGCTTTAGCTACACTTATTTGATCAATGACAAGTGATAAGTGATAAGTGGTAGTTT
1 ATAAGTGGTAGCTTTAGCTACACTTATTTGATCAATGACAAGTGATAAGTGATAAGTGGTAGTTT
194272 TAGCTACACTTATCTGATCAGTGACAAGTGATAAATG
66 TAGCTACACTTATCTGATCAGTGACAAGTGATAAATG
194309 ATAAGTGGTAGCTTTAGCTACACTTATTTGATCAATGACAAGTGATAAGTGATAAGTGGTAGTTT
1 ATAAGTGGTAGCTTTAGCTACACTTATTTGATCAATGACAAGTGATAAGTGATAAGTGGTAGTTT
194374 TAGCTACACTTATCTGATCAGTGACAAGTGATAAATG
66 TAGCTACACTTATCTGATCAGTGACAAGTGATAAATG
194411 ATAAGTGGTAGCTTTAGCTACACTTATTTGATCAATGACAAGTGATAAGTGATAAGTGGTAGTTT
1 ATAAGTGGTAGCTTTAGCTACACTTATTTGATCAATGACAAGTGATAAGTGATAAGTGGTAGTTT
194476 TAGCTACACTTATCTGATCAGTGACAAGTGATAAATG
66 TAGCTACACTTATCTGATCAGTGACAAGTGATAAATG
194513 ATAAGTGGTAGCTTTAGCTACACTTATTTGATCAATGACAAGTGATAAGTGATAAGTGGTAGTTT
1 ATAAGTGGTAGCTTTAGCTACACTTATTTGATCAATGACAAGTGATAAGTGATAAGTGGTAGTTT
194578 TAGCTACACTTATCTGATCAGTGACAAGTGATAAATG
66 TAGCTACACTTATCTGATCAGTGACAAGTGATAAATG
194615 ATAAGTGGTAGCTTTAGCTACACTTATTTGATCAATGACAAGTGATAAGTGATAAGTGGTAGTTT
1 ATAAGTGGTAGCTTTAGCTACACTTATTTGATCAATGACAAGTGATAAGTGATAAGTGGTAGTTT
194680 TAGCTACACTTATCTGATCAGTGACAAGTGATAAATG
66 TAGCTACACTTATCTGATCAGTGACAAGTGATAAATG
194717 ATAAGTGGTAGCTTTAGCTACACTTATTTGATCAATGACAAGTGATAAGTGATAAGTGGTAGTTT
1 ATAAGTGGTAGCTTTAGCTACACTTATTTGATCAATGACAAGTGATAAGTGATAAGTGGTAGTTT
194782 TAGCTACACTTATCTGATCAGTGACAAGTGATAAATG
66 TAGCTACACTTATCTGATCAGTGACAAGTGATAAATG
194819 ATAAGTGGTAGCTTTAGCTACACTTATTTGATCAATGACAAGTGATAAGTGATAAGTGGTAGTTT
1 ATAAGTGGTAGCTTTAGCTACACTTATTTGATCAATGACAAGTGATAAGTGATAAGTGGTAGTTT
194884 TAGCTACACTTATCTGATCAGTGACAAGTGATAAATG
66 TAGCTACACTTATCTGATCAGTGACAAGTGATAAATG
194921 ATAAGTGGTAGCTTTAGCTACACTTATTTGATCAATGACAAGTGATAAGTGATAAGTGGTAGTTT
1 ATAAGTGGTAGCTTTAGCTACACTTATTTGATCAATGACAAGTGATAAGTGATAAGTGGTAGTTT
194986 TAGCTACACTTATCTGATCAGTGACAAGTGATAAATG
66 TAGCTACACTTATCTGATCAGTGACAAGTGATAAATG
195023 TGATCAGTGT
Statistics
Matches: 814, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
102 814 1.00
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (102 bp):
ATAAGTGGTAGCTTTAGCTACACTTATTTGATCAATGACAAGTGATAAGTGATAAGTGGTAGTTT
TAGCTACACTTATCTGATCAGTGACAAGTGATAAATG
Done.